Query 044563
Match_columns 290
No_of_seqs 215 out of 476
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 04:30:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044563.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044563hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01675 plant-AP plant acid 100.0 5E-79 1.1E-83 553.8 20.3 222 57-278 3-228 (229)
2 TIGR01680 Veg_Stor_Prot vegeta 100.0 3.2E-75 7E-80 538.5 19.2 226 50-277 15-254 (275)
3 PF03767 Acid_phosphat_B: HAD 100.0 7.6E-63 1.6E-67 447.9 5.7 210 67-279 12-229 (229)
4 TIGR01533 lipo_e_P4 5'-nucleot 100.0 3.3E-44 7.3E-49 332.7 19.8 189 93-289 37-250 (266)
5 COG2503 Predicted secreted aci 100.0 2.5E-38 5.5E-43 286.8 15.4 183 93-283 41-248 (274)
6 PRK11009 aphA acid phosphatase 99.8 2.2E-19 4.8E-24 164.4 9.9 142 128-278 60-220 (237)
7 TIGR01672 AphA HAD superfamily 99.6 1.8E-14 3.9E-19 132.1 10.3 133 130-270 63-209 (237)
8 TIGR01689 EcbF-BcbF capsule bi 99.1 2.3E-10 4.9E-15 95.8 9.2 75 131-223 2-88 (126)
9 smart00775 LNS2 LNS2 domain. T 99.1 1E-09 2.3E-14 94.5 11.5 126 132-271 1-148 (157)
10 PHA02530 pseT polynucleotide k 99.0 2.1E-09 4.6E-14 99.7 11.2 132 128-271 156-295 (300)
11 PF08235 LNS2: LNS2 (Lipin/Ned 99.0 2.5E-09 5.4E-14 92.7 9.2 126 132-271 1-148 (157)
12 cd01427 HAD_like Haloacid deha 98.7 3.2E-08 6.9E-13 78.1 6.4 118 132-268 1-136 (139)
13 TIGR01656 Histidinol-ppas hist 98.3 2E-06 4.4E-11 72.4 8.1 126 131-273 1-146 (147)
14 TIGR01662 HAD-SF-IIIA HAD-supe 98.3 3.3E-06 7.1E-11 69.2 8.0 120 131-269 1-128 (132)
15 PF13344 Hydrolase_6: Haloacid 98.3 4.7E-06 1E-10 66.7 8.6 57 133-213 1-57 (101)
16 PRK14988 GMP/IMP nucleotidase; 98.1 2.5E-05 5.4E-10 70.4 9.7 100 169-275 92-197 (224)
17 TIGR01458 HAD-SF-IIA-hyp3 HAD- 98.0 2.2E-05 4.7E-10 72.4 9.0 63 131-213 2-64 (257)
18 TIGR01428 HAD_type_II 2-haloal 98.0 4.5E-05 9.8E-10 66.4 9.8 98 168-272 90-192 (198)
19 PF06941 NT5C: 5' nucleotidase 98.0 5.8E-06 1.2E-10 72.6 3.9 95 167-280 70-170 (191)
20 PRK11587 putative phosphatase; 97.9 7.8E-05 1.7E-09 66.3 9.7 99 168-273 81-183 (218)
21 PRK13288 pyrophosphatase PpaX; 97.9 0.00012 2.6E-09 64.6 10.5 96 168-270 80-180 (214)
22 PLN02645 phosphoglycolate phos 97.9 3E-05 6.6E-10 73.4 7.1 60 130-213 28-87 (311)
23 PRK10444 UMP phosphatase; Prov 97.8 8.7E-05 1.9E-09 68.4 9.2 59 131-213 2-60 (248)
24 TIGR01990 bPGM beta-phosphoglu 97.8 7.4E-05 1.6E-09 63.7 8.1 92 169-269 86-182 (185)
25 TIGR01549 HAD-SF-IA-v1 haloaci 97.8 4.2E-05 9E-10 63.7 6.2 86 167-261 61-149 (154)
26 TIGR01452 PGP_euk phosphoglyco 97.8 3.9E-05 8.4E-10 71.2 6.6 59 131-213 3-61 (279)
27 PRK13226 phosphoglycolate phos 97.8 0.00015 3.3E-09 65.2 9.8 97 168-271 93-194 (229)
28 COG2179 Predicted hydrolase of 97.8 0.00021 4.5E-09 62.8 9.9 108 128-271 26-137 (175)
29 COG3700 AphA Acid phosphatase 97.8 0.00023 5E-09 63.5 10.0 143 129-278 62-220 (237)
30 PLN02954 phosphoserine phospha 97.7 0.00033 7.1E-09 62.0 11.0 94 169-265 83-188 (224)
31 COG0546 Gph Predicted phosphat 97.7 0.00019 4.1E-09 64.3 9.3 88 169-262 88-178 (220)
32 TIGR01491 HAD-SF-IB-PSPlk HAD- 97.7 0.00017 3.7E-09 62.2 8.7 105 168-275 78-193 (201)
33 PRK05446 imidazole glycerol-ph 97.7 0.00012 2.7E-09 71.1 7.9 134 130-281 2-156 (354)
34 PRK13225 phosphoglycolate phos 97.7 0.00018 3.9E-09 67.2 8.5 97 168-272 140-239 (273)
35 TIGR01459 HAD-SF-IIA-hyp4 HAD- 97.6 0.00037 8.1E-09 63.2 9.7 67 129-220 7-74 (242)
36 PRK09449 dUMP phosphatase; Pro 97.6 0.0004 8.7E-09 61.5 9.6 97 169-272 94-196 (224)
37 TIGR01261 hisB_Nterm histidino 97.6 0.00025 5.4E-09 61.3 8.0 123 131-270 2-145 (161)
38 PLN03243 haloacid dehalogenase 97.6 0.00045 9.8E-09 64.0 10.3 98 168-272 107-209 (260)
39 TIGR01489 DKMTPPase-SF 2,3-dik 97.6 0.00075 1.6E-08 57.4 10.5 93 168-263 70-179 (188)
40 TIGR01664 DNA-3'-Pase DNA 3'-p 97.6 0.00023 5.1E-09 61.7 7.4 72 131-213 14-94 (166)
41 PRK06769 hypothetical protein; 97.6 0.00012 2.5E-09 63.6 5.4 122 130-271 4-136 (173)
42 PRK13222 phosphoglycolate phos 97.6 0.00057 1.2E-08 60.1 9.8 100 168-272 91-193 (226)
43 PRK08942 D,D-heptose 1,7-bisph 97.6 0.00029 6.4E-09 61.0 7.8 122 131-272 4-147 (181)
44 TIGR00213 GmhB_yaeD D,D-heptos 97.6 0.00026 5.6E-09 61.2 7.4 118 131-268 2-146 (176)
45 TIGR00338 serB phosphoserine p 97.5 0.00055 1.2E-08 60.3 9.4 44 168-214 83-126 (219)
46 TIGR01457 HAD-SF-IIA-hyp2 HAD- 97.5 0.0002 4.3E-09 65.6 6.7 59 131-213 2-60 (249)
47 PRK13582 thrH phosphoserine ph 97.5 0.00091 2E-08 58.3 10.2 89 167-260 65-158 (205)
48 PRK09552 mtnX 2-hydroxy-3-keto 97.5 0.00045 9.8E-09 61.6 8.3 90 167-263 71-177 (219)
49 PRK13223 phosphoglycolate phos 97.5 0.00069 1.5E-08 62.9 9.7 98 169-273 100-202 (272)
50 TIGR03351 PhnX-like phosphonat 97.5 0.00054 1.2E-08 60.4 8.3 98 169-273 86-192 (220)
51 COG0647 NagD Predicted sugar p 97.5 0.00029 6.3E-09 66.2 6.7 103 128-254 6-119 (269)
52 PLN02940 riboflavin kinase 97.4 0.00062 1.4E-08 66.5 9.1 101 168-273 91-195 (382)
53 PLN02575 haloacid dehalogenase 97.3 0.0015 3.2E-08 64.2 10.0 98 168-272 214-316 (381)
54 TIGR01668 YqeG_hyp_ppase HAD s 97.3 0.0012 2.6E-08 57.1 8.3 111 128-271 23-135 (170)
55 TIGR01681 HAD-SF-IIIC HAD-supe 97.3 0.0011 2.3E-08 54.9 7.4 66 132-211 2-68 (128)
56 TIGR01993 Pyr-5-nucltdase pyri 97.2 0.0015 3.3E-08 56.1 8.5 94 168-269 82-182 (184)
57 PRK06698 bifunctional 5'-methy 97.2 0.0041 8.8E-08 61.9 12.1 98 168-273 328-428 (459)
58 PHA02597 30.2 hypothetical pro 97.2 0.0018 4E-08 56.3 8.5 99 167-272 71-174 (197)
59 TIGR02463 MPGP_rel mannosyl-3- 97.2 0.00081 1.8E-08 59.6 5.9 54 133-212 2-55 (221)
60 PRK10530 pyridoxal phosphate ( 97.1 0.0017 3.6E-08 59.0 7.9 57 131-213 4-60 (272)
61 COG5083 SMP2 Uncharacterized p 97.1 0.00094 2E-08 66.4 6.5 112 130-260 375-508 (580)
62 TIGR01460 HAD-SF-IIA Haloacid 97.1 0.001 2.2E-08 60.4 5.8 57 133-213 1-58 (236)
63 TIGR01486 HAD-SF-IIB-MPGP mann 97.1 0.0017 3.7E-08 59.1 7.3 55 133-213 2-56 (256)
64 PF11019 DUF2608: Protein of u 97.1 0.0019 4.1E-08 59.9 7.6 83 131-213 21-124 (252)
65 PRK09484 3-deoxy-D-manno-octul 97.0 0.00048 1E-08 60.3 3.4 107 129-262 20-128 (183)
66 PRK15126 thiamin pyrimidine py 97.0 0.0024 5.2E-08 58.5 7.9 57 131-213 3-59 (272)
67 PF08282 Hydrolase_3: haloacid 97.0 0.0014 3E-08 57.3 5.9 55 133-213 1-55 (254)
68 PRK10976 putative hydrolase; P 97.0 0.0024 5.3E-08 58.1 7.5 57 131-213 3-59 (266)
69 COG0637 Predicted phosphatase/ 97.0 0.0031 6.8E-08 56.8 8.1 101 168-274 84-188 (221)
70 COG4850 Uncharacterized conser 97.0 0.0034 7.4E-08 60.4 8.5 116 132-255 163-286 (373)
71 TIGR02461 osmo_MPG_phos mannos 97.0 0.0024 5.2E-08 57.8 7.2 55 132-213 1-55 (225)
72 PF13419 HAD_2: Haloacid dehal 97.0 0.0023 4.9E-08 52.8 6.5 92 166-262 73-166 (176)
73 PRK00192 mannosyl-3-phosphogly 97.0 0.0028 6E-08 58.5 7.7 57 131-213 5-61 (273)
74 PRK01158 phosphoglycolate phos 96.9 0.0018 3.8E-08 57.4 6.0 57 131-213 4-60 (230)
75 TIGR02254 YjjG/YfnB HAD superf 96.9 0.0079 1.7E-07 52.6 9.7 95 169-271 96-197 (224)
76 TIGR02137 HSK-PSP phosphoserin 96.9 0.0076 1.6E-07 54.0 9.6 89 168-261 66-159 (203)
77 TIGR01456 CECR5 HAD-superfamil 96.9 0.0027 5.8E-08 60.5 7.0 58 132-213 2-64 (321)
78 COG0561 Cof Predicted hydrolas 96.9 0.002 4.4E-08 58.7 5.9 58 130-210 3-60 (264)
79 TIGR00099 Cof-subfamily Cof su 96.8 0.0038 8.3E-08 56.6 7.5 56 132-213 1-56 (256)
80 TIGR01487 SPP-like sucrose-pho 96.8 0.003 6.6E-08 55.8 6.6 46 131-199 2-47 (215)
81 TIGR01685 MDP-1 magnesium-depe 96.8 0.004 8.7E-08 54.8 7.1 137 130-273 2-158 (174)
82 TIGR01482 SPP-subfamily Sucros 96.8 0.0024 5.3E-08 56.3 5.6 55 133-213 1-55 (225)
83 TIGR02726 phenyl_P_delta pheny 96.8 0.0022 4.7E-08 56.2 5.0 116 130-273 7-125 (169)
84 PRK10513 sugar phosphate phosp 96.8 0.0032 6.9E-08 57.4 6.4 56 131-212 4-59 (270)
85 PTZ00174 phosphomannomutase; P 96.8 0.0027 5.9E-08 57.9 5.9 46 130-198 5-50 (247)
86 PRK03669 mannosyl-3-phosphogly 96.7 0.0035 7.6E-08 57.7 6.4 57 130-212 7-63 (271)
87 COG1778 Low specificity phosph 96.7 0.0026 5.7E-08 55.5 5.2 102 131-260 9-113 (170)
88 TIGR01670 YrbI-phosphatas 3-de 96.7 0.0027 5.9E-08 54.0 5.3 73 178-262 36-108 (154)
89 TIGR01663 PNK-3'Pase polynucle 96.7 0.01 2.2E-07 60.6 10.0 114 130-260 168-298 (526)
90 TIGR02253 CTE7 HAD superfamily 96.7 0.0057 1.2E-07 53.8 7.1 101 169-276 93-199 (221)
91 TIGR01684 viral_ppase viral ph 96.6 0.0084 1.8E-07 57.2 8.4 69 130-221 126-194 (301)
92 PRK10826 2-deoxyglucose-6-phos 96.6 0.0088 1.9E-07 53.1 7.6 101 168-274 90-194 (222)
93 KOG3040 Predicted sugar phosph 96.6 0.014 3.1E-07 53.4 8.9 99 131-264 8-107 (262)
94 TIGR01484 HAD-SF-IIB HAD-super 96.6 0.0043 9.3E-08 54.2 5.5 45 133-199 2-46 (204)
95 PLN02919 haloacid dehalogenase 96.5 0.013 2.9E-07 64.4 10.1 99 170-273 161-263 (1057)
96 PRK10748 flavin mononucleotide 96.5 0.0096 2.1E-07 53.9 7.7 92 169-273 112-209 (238)
97 TIGR01422 phosphonatase phosph 96.5 0.0076 1.6E-07 54.6 6.8 100 168-273 97-202 (253)
98 PLN02779 haloacid dehalogenase 96.3 0.017 3.7E-07 54.1 8.2 101 169-274 143-248 (286)
99 PRK08238 hypothetical protein; 96.3 0.025 5.4E-07 57.2 9.9 84 168-261 70-154 (479)
100 TIGR02009 PGMB-YQAB-SF beta-ph 96.3 0.0072 1.6E-07 51.4 5.2 85 168-262 86-175 (185)
101 PRK10725 fructose-1-P/6-phosph 96.3 0.024 5.2E-07 48.5 8.4 93 170-271 88-185 (188)
102 PHA03398 viral phosphatase sup 96.3 0.018 3.9E-07 55.0 8.2 70 129-221 127-196 (303)
103 PLN02887 hydrolase family prot 96.1 0.018 4E-07 59.5 8.1 45 131-198 309-353 (580)
104 PLN03017 trehalose-phosphatase 96.1 0.0096 2.1E-07 58.3 5.8 63 116-197 96-159 (366)
105 TIGR01454 AHBA_synth_RP 3-amin 96.1 0.02 4.3E-07 50.0 7.3 96 168-270 73-173 (205)
106 PRK12702 mannosyl-3-phosphogly 96.1 0.012 2.7E-07 56.1 6.1 57 131-213 2-58 (302)
107 KOG2116 Protein involved in pl 96.0 0.017 3.8E-07 59.9 7.2 80 132-223 532-615 (738)
108 PRK11133 serB phosphoserine ph 96.0 0.041 8.8E-07 52.9 9.2 90 168-262 179-280 (322)
109 TIGR01548 HAD-SF-IA-hyp1 haloa 96.0 0.023 5E-07 49.5 6.9 88 170-262 106-194 (197)
110 smart00577 CPDc catalytic doma 95.9 0.012 2.7E-07 49.6 4.8 126 130-263 2-132 (148)
111 PRK10187 trehalose-6-phosphate 95.9 0.014 3E-07 54.2 5.4 51 130-198 14-65 (266)
112 PLN02770 haloacid dehalogenase 95.9 0.027 5.8E-07 51.4 7.1 99 168-272 106-208 (248)
113 TIGR02252 DREG-2 REG-2-like, H 95.7 0.021 4.5E-07 49.7 5.7 86 170-262 105-194 (203)
114 COG1877 OtsB Trehalose-6-phosp 95.7 0.022 4.8E-07 53.5 6.2 79 127-224 15-94 (266)
115 TIGR01449 PGP_bact 2-phosphogl 95.6 0.036 7.9E-07 48.2 6.5 96 169-271 84-184 (213)
116 COG0560 SerB Phosphoserine pho 95.5 0.091 2E-06 47.5 9.1 89 169-260 76-174 (212)
117 TIGR01493 HAD-SF-IA-v2 Haloaci 95.5 0.022 4.8E-07 48.3 4.7 81 168-262 88-172 (175)
118 PLN02423 phosphomannomutase 95.5 0.031 6.8E-07 51.2 6.0 44 129-196 5-49 (245)
119 PF06888 Put_Phosphatase: Puta 95.4 0.25 5.4E-06 45.6 11.8 110 167-279 68-203 (234)
120 TIGR01509 HAD-SF-IA-v3 haloaci 95.4 0.049 1.1E-06 45.9 6.5 95 169-269 84-181 (183)
121 PRK09456 ?-D-glucose-1-phospha 95.4 0.045 9.8E-07 47.8 6.5 99 169-274 83-187 (199)
122 PRK13478 phosphonoacetaldehyde 95.3 0.046 1E-06 50.1 6.7 98 168-272 99-203 (267)
123 PRK14502 bifunctional mannosyl 95.3 0.036 7.8E-07 58.3 6.5 48 129-199 415-462 (694)
124 TIGR02247 HAD-1A3-hyp Epoxide 95.3 0.046 1E-06 47.9 6.3 100 168-273 92-197 (211)
125 KOG2882 p-Nitrophenyl phosphat 95.3 0.035 7.6E-07 53.0 5.7 104 128-255 20-135 (306)
126 TIGR01485 SPP_plant-cyano sucr 95.3 0.019 4.2E-07 52.1 3.9 46 132-197 3-48 (249)
127 PF00702 Hydrolase: haloacid d 95.2 0.039 8.6E-07 47.5 5.4 83 168-260 125-209 (215)
128 TIGR01488 HAD-SF-IB Haloacid D 95.2 0.088 1.9E-06 44.4 7.4 90 168-260 71-172 (177)
129 PLN02151 trehalose-phosphatase 95.1 0.047 1E-06 53.3 6.2 63 116-197 83-146 (354)
130 PF09419 PGP_phosphatase: Mito 95.0 0.22 4.7E-06 43.9 9.5 106 127-263 38-154 (168)
131 TIGR01686 FkbH FkbH-like domai 95.0 0.094 2E-06 49.8 7.8 113 130-262 3-119 (320)
132 TIGR01512 ATPase-IB2_Cd heavy 94.9 0.084 1.8E-06 53.8 7.7 80 168-261 360-440 (536)
133 PF08645 PNK3P: Polynucleotide 94.8 0.021 4.5E-07 49.3 2.6 108 132-258 2-130 (159)
134 TIGR00685 T6PP trehalose-phosp 94.8 0.063 1.4E-06 48.8 5.9 50 129-196 2-52 (244)
135 TIGR02250 FCP1_euk FCP1-like p 94.6 0.064 1.4E-06 46.2 5.1 127 127-262 3-143 (156)
136 TIGR01490 HAD-SF-IB-hyp1 HAD-s 94.5 0.22 4.8E-06 43.1 8.5 104 168-274 85-200 (202)
137 TIGR02471 sucr_syn_bact_C sucr 94.5 0.077 1.7E-06 47.6 5.7 42 132-198 1-42 (236)
138 TIGR01497 kdpB K+-transporting 94.4 0.19 4.1E-06 53.0 9.0 79 168-260 444-522 (675)
139 TIGR01522 ATPase-IIA2_Ca golgi 94.2 0.26 5.6E-06 53.4 9.7 89 168-260 526-631 (884)
140 COG0241 HisB Histidinol phosph 93.9 0.31 6.7E-06 43.4 8.2 124 130-271 5-148 (181)
141 PLN02580 trehalose-phosphatase 93.9 0.11 2.3E-06 51.4 5.8 49 129-196 118-166 (384)
142 TIGR01525 ATPase-IB_hvy heavy 93.9 0.21 4.6E-06 51.0 8.1 81 168-262 382-463 (556)
143 TIGR01517 ATPase-IIB_Ca plasma 93.9 0.25 5.5E-06 53.7 9.1 88 168-260 577-682 (941)
144 PRK14010 potassium-transportin 93.9 0.18 3.9E-06 53.2 7.6 78 168-260 439-517 (673)
145 PLN02811 hydrolase 93.7 0.12 2.6E-06 46.0 5.2 101 168-274 76-186 (220)
146 TIGR01647 ATPase-IIIA_H plasma 93.5 0.27 5.9E-06 52.3 8.3 88 168-260 440-548 (755)
147 COG2217 ZntA Cation transport 93.4 0.3 6.4E-06 51.9 8.3 79 168-260 535-613 (713)
148 PF12710 HAD: haloacid dehalog 93.4 0.35 7.6E-06 41.0 7.4 84 174-260 93-189 (192)
149 TIGR01106 ATPase-IIC_X-K sodiu 93.2 0.52 1.1E-05 51.8 10.0 89 168-260 566-697 (997)
150 PRK01122 potassium-transportin 93.1 0.41 8.9E-06 50.6 8.9 78 168-260 443-521 (679)
151 KOG2914 Predicted haloacid-hal 93.1 0.29 6.2E-06 44.9 6.7 53 156-208 69-130 (222)
152 PF10307 DUF2410: Hypothetical 93.0 0.4 8.7E-06 43.3 7.4 97 157-261 48-148 (197)
153 TIGR01511 ATPase-IB1_Cu copper 92.6 0.59 1.3E-05 48.0 9.0 80 168-262 403-482 (562)
154 TIGR01524 ATPase-IIIB_Mg magne 92.4 0.73 1.6E-05 49.9 9.7 86 168-260 513-616 (867)
155 PRK14501 putative bifunctional 92.4 0.21 4.6E-06 52.7 5.5 51 129-197 491-542 (726)
156 PRK15122 magnesium-transportin 92.2 0.72 1.6E-05 50.2 9.4 86 168-260 548-651 (903)
157 TIGR03333 salvage_mtnX 2-hydro 91.9 0.45 9.8E-06 42.2 6.4 92 168-263 68-173 (214)
158 TIGR02251 HIF-SF_euk Dullard-l 91.4 0.26 5.7E-06 42.4 4.2 84 171-263 43-129 (162)
159 PF02358 Trehalose_PPase: Treh 91.3 0.2 4.4E-06 45.1 3.5 48 134-199 1-49 (235)
160 PRK11033 zntA zinc/cadmium/mer 91.2 0.79 1.7E-05 48.8 8.3 78 168-261 566-643 (741)
161 TIGR01116 ATPase-IIA1_Ca sarco 91.2 1.2 2.6E-05 48.5 9.8 89 168-260 535-644 (917)
162 PRK10517 magnesium-transportin 91.2 1.1 2.3E-05 48.9 9.3 87 168-260 548-651 (902)
163 TIGR01691 enolase-ppase 2,3-di 91.1 0.55 1.2E-05 42.7 6.1 105 160-272 83-196 (220)
164 TIGR01544 HAD-SF-IE haloacid d 90.9 1.5 3.2E-05 41.6 8.9 55 155-212 106-160 (277)
165 TIGR01523 ATPase-IID_K-Na pota 90.5 1.3 2.8E-05 49.2 9.3 89 168-260 644-759 (1053)
166 KOG1615 Phosphoserine phosphat 90.3 1.5 3.3E-05 39.9 8.0 103 160-265 78-192 (227)
167 PTZ00445 p36-lilke protein; Pr 90.3 0.66 1.4E-05 42.5 5.8 163 93-275 10-208 (219)
168 KOG3120 Predicted haloacid deh 90.1 6.4 0.00014 36.7 12.0 128 130-260 13-196 (256)
169 PRK10671 copA copper exporting 89.2 1.6 3.4E-05 47.0 8.6 80 168-261 648-727 (834)
170 KOG1618 Predicted phosphatase 89.1 1.8 3.9E-05 42.2 7.9 43 131-197 36-82 (389)
171 TIGR01494 ATPase_P-type ATPase 88.8 1.7 3.6E-05 43.8 8.0 76 168-260 345-420 (499)
172 PLN02205 alpha,alpha-trehalose 88.7 0.7 1.5E-05 50.1 5.5 49 129-197 595-644 (854)
173 PF12689 Acid_PPase: Acid Phos 88.7 0.65 1.4E-05 40.8 4.4 136 130-273 3-152 (169)
174 PF05116 S6PP: Sucrose-6F-phos 88.2 0.68 1.5E-05 42.5 4.4 33 178-213 27-59 (247)
175 COG5663 Uncharacterized conser 88.2 0.65 1.4E-05 41.3 4.0 89 133-222 9-122 (194)
176 PLN03064 alpha,alpha-trehalose 88.1 1.1 2.3E-05 49.1 6.5 61 129-198 590-651 (934)
177 COG4359 Uncharacterized conser 87.9 6.2 0.00013 35.8 10.0 91 168-262 71-175 (220)
178 PRK11590 hypothetical protein; 87.7 4.2 9.1E-05 36.0 9.1 103 169-275 94-206 (211)
179 PRK10563 6-phosphogluconate ph 87.4 0.86 1.9E-05 40.1 4.4 94 169-271 87-185 (221)
180 PLN02382 probable sucrose-phos 87.0 0.99 2.1E-05 44.8 5.0 47 130-196 9-55 (413)
181 PF03031 NIF: NLI interacting 86.2 0.6 1.3E-05 39.2 2.7 127 132-272 2-130 (159)
182 COG1011 Predicted hydrolase (H 85.7 4 8.8E-05 35.6 7.8 102 169-277 98-204 (229)
183 PF05152 DUF705: Protein of un 85.1 2.1 4.5E-05 40.9 5.9 71 128-221 120-190 (297)
184 PLN03063 alpha,alpha-trehalose 83.4 2.6 5.7E-05 45.3 6.5 55 129-198 506-561 (797)
185 KOG0207 Cation transport ATPas 82.2 6.1 0.00013 43.1 8.5 80 168-261 721-800 (951)
186 TIGR02245 HAD_IIID1 HAD-superf 77.9 4.9 0.00011 36.1 5.4 66 124-206 15-80 (195)
187 TIGR01545 YfhB_g-proteo haloac 76.2 15 0.00033 32.8 8.1 101 170-274 94-204 (210)
188 TIGR01657 P-ATPase-V P-type AT 73.3 16 0.00035 40.6 8.9 30 168-197 654-683 (1054)
189 PLN02779 haloacid dehalogenase 72.2 4.4 9.5E-05 37.9 3.7 17 129-145 39-55 (286)
190 cd06591 GH31_xylosidase_XylS X 70.8 9.2 0.0002 36.4 5.7 92 98-212 12-105 (319)
191 TIGR01548 HAD-SF-IA-hyp1 haloa 70.5 2.1 4.5E-05 37.2 1.1 13 132-144 2-14 (197)
192 TIGR02009 PGMB-YQAB-SF beta-ph 70.1 2.5 5.4E-05 35.7 1.4 14 131-144 2-15 (185)
193 COG3769 Predicted hydrolase (H 69.9 7.1 0.00015 36.4 4.4 44 131-198 8-51 (274)
194 PF10137 TIR-like: Predicted n 69.2 20 0.00044 29.9 6.7 67 188-260 1-67 (125)
195 TIGR02253 CTE7 HAD superfamily 66.9 3.3 7.2E-05 36.1 1.6 14 131-144 3-16 (221)
196 TIGR02252 DREG-2 REG-2-like, H 66.0 3.2 7E-05 35.8 1.4 14 131-144 1-14 (203)
197 TIGR01422 phosphonatase phosph 63.1 4.3 9.3E-05 36.6 1.7 14 131-144 3-16 (253)
198 PF09949 DUF2183: Uncharacteri 63.0 31 0.00068 27.7 6.5 66 189-255 2-73 (100)
199 PLN02770 haloacid dehalogenase 62.2 4.3 9.3E-05 36.9 1.5 15 130-144 22-36 (248)
200 KOG0912 Thiol-disulfide isomer 60.9 25 0.00055 34.3 6.4 92 128-254 172-267 (375)
201 PRK13478 phosphonoacetaldehyde 60.8 4.3 9.4E-05 37.1 1.3 14 131-144 5-18 (267)
202 PRK11590 hypothetical protein; 60.4 4.8 0.0001 35.6 1.5 15 129-143 5-19 (211)
203 PF03345 DDOST_48kD: Oligosacc 60.1 23 0.0005 35.6 6.3 76 176-259 15-92 (423)
204 PF07511 DUF1525: Protein of u 60.0 18 0.0004 29.9 4.7 49 88-136 42-90 (114)
205 cd06598 GH31_transferase_CtsZ 59.6 54 0.0012 31.1 8.5 39 174-212 71-109 (317)
206 TIGR02764 spore_ybaN_pdaB poly 59.0 24 0.00053 30.5 5.6 65 177-250 49-125 (191)
207 KOG0202 Ca2+ transporting ATPa 58.7 65 0.0014 35.4 9.6 88 168-260 582-691 (972)
208 TIGR03590 PseG pseudaminic aci 58.5 41 0.00088 31.2 7.4 38 173-213 18-55 (279)
209 PRK10563 6-phosphogluconate ph 57.4 6.4 0.00014 34.5 1.7 15 130-144 4-18 (221)
210 TIGR01509 HAD-SF-IA-v3 haloaci 57.2 4.5 9.8E-05 33.8 0.7 13 132-144 1-13 (183)
211 PF01380 SIS: SIS domain SIS d 57.1 16 0.00035 28.9 3.9 27 172-198 66-92 (131)
212 cd05013 SIS_RpiR RpiR-like pro 56.6 16 0.00034 28.9 3.8 26 173-198 74-99 (139)
213 cd05008 SIS_GlmS_GlmD_1 SIS (S 55.7 16 0.00034 29.0 3.6 27 172-198 59-85 (126)
214 cd05014 SIS_Kpsf KpsF-like pro 55.3 17 0.00036 29.0 3.7 27 172-198 60-86 (128)
215 TIGR03757 conj_TIGR03757 integ 55.0 25 0.00055 29.1 4.7 49 88-136 43-91 (113)
216 TIGR02244 HAD-IG-Ncltidse HAD 54.3 17 0.00036 35.6 4.1 38 170-210 184-221 (343)
217 TIGR03127 RuMP_HxlB 6-phospho 53.7 17 0.00036 31.2 3.7 27 172-198 85-111 (179)
218 TIGR02247 HAD-1A3-hyp Epoxide 51.7 8.5 0.00018 33.5 1.5 15 131-145 3-17 (211)
219 PRK10826 2-deoxyglucose-6-phos 51.7 9.9 0.00021 33.5 2.0 16 129-144 6-21 (222)
220 COG4996 Predicted phosphatase 51.6 57 0.0012 28.3 6.4 85 132-220 2-88 (164)
221 cd02875 GH18_chitobiase Chitob 51.4 59 0.0013 31.5 7.5 75 177-252 68-158 (358)
222 COG0474 MgtA Cation transport 51.2 75 0.0016 35.0 8.9 88 168-260 545-652 (917)
223 TIGR01454 AHBA_synth_RP 3-amin 50.4 6.5 0.00014 34.1 0.6 12 133-144 1-12 (205)
224 cd05710 SIS_1 A subgroup of th 49.4 23 0.0005 28.5 3.7 27 172-198 60-86 (120)
225 PF13477 Glyco_trans_4_2: Glyc 48.8 64 0.0014 25.6 6.2 71 174-253 12-82 (139)
226 TIGR01449 PGP_bact 2-phosphogl 48.5 7.2 0.00016 33.7 0.6 12 133-144 1-12 (213)
227 TIGR02764 spore_ybaN_pdaB poly 48.2 86 0.0019 27.0 7.4 71 178-250 112-186 (191)
228 cd05006 SIS_GmhA Phosphoheptos 47.5 24 0.00053 30.2 3.7 28 171-198 113-140 (177)
229 cd05005 SIS_PHI Hexulose-6-pho 47.3 24 0.00053 30.3 3.7 27 172-198 88-114 (179)
230 smart00851 MGS MGS-like domain 47.0 31 0.00067 26.3 3.9 64 175-255 2-65 (90)
231 cd06416 GH25_Lys1-like Lys-1 i 45.6 44 0.00096 29.2 5.1 67 110-196 67-133 (196)
232 KOG3085 Predicted hydrolase (H 45.3 41 0.00089 31.3 5.0 102 170-277 113-218 (237)
233 cd06601 GH31_lyase_GLase GLase 44.4 35 0.00076 33.0 4.6 61 110-195 24-86 (332)
234 COG5610 Predicted hydrolase (H 44.3 82 0.0018 32.5 7.2 86 169-257 98-185 (635)
235 cd06414 GH25_LytC-like The Lyt 44.3 80 0.0017 27.5 6.6 67 109-196 69-136 (191)
236 PRK09456 ?-D-glucose-1-phospha 44.3 14 0.0003 32.0 1.7 14 131-144 1-14 (199)
237 cd00532 MGS-like MGS-like doma 43.9 1.5E+02 0.0033 23.5 7.7 65 173-254 12-77 (112)
238 PF14336 DUF4392: Domain of un 43.7 85 0.0018 29.8 7.0 79 170-253 60-139 (291)
239 cd06595 GH31_xylosidase_XylS-l 43.6 41 0.00088 31.6 4.9 24 173-196 74-97 (292)
240 TIGR00441 gmhA phosphoheptose 43.6 31 0.00068 29.1 3.7 27 172-198 92-118 (154)
241 PF09049 SNN_transmemb: Stanni 43.5 47 0.001 21.3 3.5 22 29-51 11-32 (33)
242 PRK13937 phosphoheptose isomer 43.5 30 0.00064 30.3 3.7 27 172-198 119-145 (188)
243 PF02142 MGS: MGS-like domain 43.1 36 0.00078 26.3 3.8 72 174-257 1-72 (95)
244 cd06599 GH31_glycosidase_Aec37 43.0 82 0.0018 29.9 6.9 41 172-212 72-112 (317)
245 cd01423 MGS_CPS_I_III Methylgl 42.6 1.7E+02 0.0037 23.2 8.2 72 173-258 13-84 (116)
246 COG4229 Predicted enolase-phos 41.9 37 0.00081 30.9 4.0 29 168-196 101-129 (229)
247 cd05017 SIS_PGI_PMI_1 The memb 41.5 34 0.00075 27.3 3.5 25 172-196 56-80 (119)
248 COG3603 Uncharacterized conser 41.2 42 0.00091 28.3 3.9 50 172-248 76-126 (128)
249 COG1011 Predicted hydrolase (H 40.9 14 0.00031 32.0 1.3 15 130-144 4-18 (229)
250 PF00070 Pyr_redox: Pyridine n 39.8 1.1E+02 0.0024 22.4 5.8 40 173-212 9-55 (80)
251 PF13478 XdhC_C: XdhC Rossmann 39.5 1.1E+02 0.0024 25.6 6.5 74 175-255 10-90 (136)
252 PF10138 vWA-TerF-like: vWA fo 39.0 51 0.0011 29.9 4.5 100 110-213 24-133 (200)
253 cd01421 IMPCH Inosine monophos 38.6 42 0.00091 30.2 3.9 34 172-213 10-43 (187)
254 PRK02228 V-type ATP synthase s 38.4 1.3E+02 0.0028 23.9 6.3 41 173-213 30-72 (100)
255 cd06523 GH25_PlyB-like PlyB is 38.0 97 0.0021 26.8 6.0 59 109-196 66-125 (177)
256 PRK13859 type IV secretion sys 37.9 33 0.00072 24.7 2.5 14 43-56 7-20 (55)
257 PF06189 5-nucleotidase: 5'-nu 37.5 76 0.0016 30.1 5.5 151 94-263 77-249 (264)
258 PF13701 DDE_Tnp_1_4: Transpos 37.4 27 0.00058 35.1 2.7 85 129-213 138-243 (448)
259 PRK12342 hypothetical protein; 37.1 2.9E+02 0.0063 25.8 9.4 84 171-262 40-125 (254)
260 cd01424 MGS_CPS_II Methylglyox 37.0 1.9E+02 0.004 22.7 7.1 33 173-213 13-45 (110)
261 cd04795 SIS SIS domain. SIS (S 36.7 43 0.00094 24.4 3.2 22 172-193 60-81 (87)
262 cd06589 GH31 The enzymes of gl 35.9 67 0.0015 29.6 4.9 40 173-214 66-109 (265)
263 TIGR01452 PGP_euk phosphoglyco 35.8 17 0.00038 33.5 1.1 26 172-198 145-170 (279)
264 KOG1344 Predicted histone deac 35.6 1.8E+02 0.0038 27.6 7.5 97 91-212 218-322 (324)
265 COG2237 Predicted membrane pro 35.0 51 0.0011 32.6 4.1 30 168-197 46-77 (364)
266 PF00702 Hydrolase: haloacid d 35.0 24 0.00052 30.0 1.7 22 236-257 134-155 (215)
267 TIGR02873 spore_ylxY probable 34.9 1.4E+02 0.0031 27.8 7.0 18 234-251 188-205 (268)
268 COG1184 GCD2 Translation initi 34.9 74 0.0016 30.7 5.1 40 174-213 131-172 (301)
269 PF13580 SIS_2: SIS domain; PD 34.7 42 0.0009 27.8 3.1 22 173-194 117-138 (138)
270 cd06592 GH31_glucosidase_KIAA1 34.6 93 0.002 29.3 5.8 23 173-195 70-92 (303)
271 PF04055 Radical_SAM: Radical 34.1 2E+02 0.0043 22.7 7.0 27 185-212 75-101 (166)
272 cd06600 GH31_MGAM-like This fa 33.5 57 0.0012 31.0 4.2 61 109-194 23-85 (317)
273 PRK13938 phosphoheptose isomer 33.0 55 0.0012 29.2 3.7 27 172-198 126-152 (196)
274 COG0279 GmhA Phosphoheptose is 32.5 57 0.0012 29.1 3.6 27 173-199 123-149 (176)
275 KOG1605 TFIIF-interacting CTD 32.2 30 0.00065 32.6 2.0 20 127-146 86-105 (262)
276 cd06415 GH25_Cpl1-like Cpl-1 l 32.0 87 0.0019 27.5 4.8 66 108-196 65-131 (196)
277 PF04123 DUF373: Domain of unk 32.0 1.1E+02 0.0024 30.0 5.9 30 168-197 46-77 (344)
278 PRK13936 phosphoheptose isomer 31.7 59 0.0013 28.7 3.7 27 172-198 124-150 (197)
279 PRK10886 DnaA initiator-associ 30.9 63 0.0014 28.9 3.7 27 172-198 122-148 (196)
280 TIGR00696 wecB_tagA_cpsF bacte 30.5 3.1E+02 0.0068 24.0 8.1 41 171-213 33-73 (177)
281 PRK11337 DNA-binding transcrip 30.5 60 0.0013 30.0 3.7 27 172-198 200-226 (292)
282 PF14770 TMEM18: Transmembrane 30.3 1.1E+02 0.0024 25.6 4.8 41 10-52 67-107 (123)
283 COG1222 RPT1 ATP-dependent 26S 30.2 2.1E+02 0.0045 28.7 7.4 77 93-198 219-302 (406)
284 COG2044 Predicted peroxiredoxi 30.1 47 0.001 27.9 2.6 31 164-194 53-83 (120)
285 cd01994 Alpha_ANH_like_IV This 30.0 3E+02 0.0065 24.3 7.9 79 174-261 12-103 (194)
286 PF15202 Adipogenin: Adipogeni 29.8 89 0.0019 23.9 3.8 40 33-92 25-65 (81)
287 TIGR01652 ATPase-Plipid phosph 29.7 2.1E+02 0.0045 32.0 8.3 29 168-196 629-657 (1057)
288 PF01713 Smr: Smr domain; Int 29.6 78 0.0017 23.7 3.6 43 170-213 10-58 (83)
289 cd06603 GH31_GANC_GANAB_alpha 29.1 70 0.0015 30.7 4.0 79 109-212 23-105 (339)
290 COG2344 AT-rich DNA-binding pr 29.1 1.5E+02 0.0032 27.1 5.7 44 170-214 130-173 (211)
291 PF01740 STAS: STAS domain; I 29.1 1.1E+02 0.0023 23.9 4.5 38 171-213 65-102 (117)
292 KOG0090 Signal recognition par 28.6 1.9E+02 0.004 27.0 6.4 13 68-80 71-83 (238)
293 PF00106 adh_short: short chai 28.4 95 0.0021 25.2 4.2 36 176-211 14-51 (167)
294 cd01011 nicotinamidase Nicotin 28.3 2.6E+02 0.0056 24.4 7.2 68 176-248 127-195 (196)
295 cd06524 GH25_YegX-like YegX is 28.3 1.3E+02 0.0027 26.3 5.2 63 111-196 69-133 (194)
296 PRK08063 enoyl-(acyl carrier p 28.2 97 0.0021 27.0 4.5 36 176-211 18-53 (250)
297 PRK15482 transcriptional regul 28.0 71 0.0015 29.5 3.7 28 171-198 194-221 (285)
298 KOG0203 Na+/K+ ATPase, alpha s 27.8 85 0.0018 34.6 4.6 28 170-197 590-617 (1019)
299 PF05872 DUF853: Bacterial pro 27.6 3.3E+02 0.0071 28.2 8.4 66 112-199 235-303 (502)
300 PF03033 Glyco_transf_28: Glyc 27.5 63 0.0014 25.7 2.9 36 172-213 12-47 (139)
301 PF08659 KR: KR domain; Inter 27.3 2.5E+02 0.0053 24.0 6.8 38 175-212 13-53 (181)
302 PF05761 5_nucleotid: 5' nucle 27.2 66 0.0014 32.6 3.5 46 173-218 186-234 (448)
303 PF01522 Polysacc_deac_1: Poly 27.2 1.3E+02 0.0029 23.2 4.7 10 130-139 5-14 (123)
304 COG1660 Predicted P-loop-conta 27.0 61 0.0013 31.0 3.0 30 188-217 2-31 (286)
305 cd00861 ProRS_anticodon_short 27.0 2.2E+02 0.0048 21.0 5.8 14 242-255 51-64 (94)
306 PRK12360 4-hydroxy-3-methylbut 26.8 2.9E+02 0.0062 26.3 7.6 48 199-257 79-127 (281)
307 TIGR01545 YfhB_g-proteo haloac 26.6 36 0.00078 30.3 1.5 15 130-144 5-19 (210)
308 COG0300 DltE Short-chain dehyd 26.6 2.4E+02 0.0052 26.6 7.0 68 176-250 20-87 (265)
309 TIGR02884 spore_pdaA delta-lac 26.5 1.9E+02 0.0041 25.9 6.1 67 177-251 80-158 (224)
310 cd03012 TlpA_like_DipZ_like Tl 26.4 1.2E+02 0.0027 24.0 4.5 42 172-213 42-86 (126)
311 PF11359 gpUL132: Glycoprotein 26.4 1.1E+02 0.0024 28.3 4.4 14 131-144 155-168 (235)
312 TIGR01459 HAD-SF-IIA-hyp4 HAD- 26.2 46 0.00099 29.9 2.1 27 172-199 140-166 (242)
313 PRK11557 putative DNA-binding 26.1 78 0.0017 29.0 3.6 27 172-198 188-214 (278)
314 KOG2470 Similar to IMP-GMP spe 26.1 70 0.0015 32.0 3.4 27 171-197 241-267 (510)
315 PRK00414 gmhA phosphoheptose i 26.0 85 0.0018 27.7 3.7 27 172-198 124-150 (192)
316 cd06299 PBP1_LacI_like_13 Liga 25.9 3.1E+02 0.0066 23.8 7.3 37 175-213 44-80 (265)
317 cd06522 GH25_AtlA-like AtlA is 25.7 1.6E+02 0.0035 25.7 5.4 62 109-196 69-133 (192)
318 COG1501 Alpha-glucosidases, fa 25.5 1.7E+02 0.0036 31.9 6.4 62 131-212 297-360 (772)
319 PF13439 Glyco_transf_4: Glyco 25.2 87 0.0019 24.9 3.4 26 175-200 18-43 (177)
320 cd06594 GH31_glucosidase_YihQ 25.2 1.4E+02 0.003 28.5 5.2 40 173-212 71-111 (317)
321 PF00857 Isochorismatase: Isoc 25.2 2.3E+02 0.005 23.5 6.1 69 176-249 101-170 (174)
322 PF00578 AhpC-TSA: AhpC/TSA fa 24.5 1.2E+02 0.0027 23.3 4.1 75 130-213 6-83 (124)
323 PF15347 PAG: Phosphoprotein a 24.5 1.1E+02 0.0024 30.6 4.4 38 16-55 6-44 (428)
324 cd04883 ACT_AcuB C-terminal AC 24.4 1.9E+02 0.004 20.3 4.7 55 176-250 16-70 (72)
325 TIGR00393 kpsF KpsF/GutQ famil 24.3 90 0.0019 28.2 3.6 25 172-196 60-84 (268)
326 PRK02947 hypothetical protein; 24.2 90 0.0019 28.6 3.6 25 173-197 120-144 (246)
327 TIGR03470 HpnH hopanoid biosyn 24.1 4.3E+02 0.0093 25.1 8.4 40 172-213 86-125 (318)
328 PF06414 Zeta_toxin: Zeta toxi 24.1 3.8E+02 0.0081 23.2 7.4 80 129-213 41-121 (199)
329 PF03668 ATP_bind_2: P-loop AT 23.9 72 0.0016 30.5 3.0 31 187-217 1-31 (284)
330 COG1737 RpiR Transcriptional r 23.9 91 0.002 29.1 3.7 28 170-197 188-215 (281)
331 COG1820 NagA N-acetylglucosami 23.8 2.8E+02 0.0061 27.7 7.1 97 107-219 101-216 (380)
332 PRK11302 DNA-binding transcrip 23.7 94 0.002 28.4 3.6 24 172-195 188-211 (284)
333 PRK12446 undecaprenyldiphospho 23.7 70 0.0015 30.7 2.9 38 172-213 15-52 (352)
334 KOG2365 Uncharacterized membra 23.6 94 0.002 33.0 3.9 28 95-122 441-468 (808)
335 cd03819 GT1_WavL_like This fam 23.2 3.3E+02 0.007 24.6 7.1 34 174-212 15-48 (355)
336 cd06593 GH31_xylosidase_YicI Y 23.0 2.1E+02 0.0046 26.7 6.0 40 173-212 66-105 (308)
337 PRK00994 F420-dependent methyl 22.6 1.4E+02 0.003 28.3 4.4 51 167-223 68-118 (277)
338 TIGR01657 P-ATPase-V P-type AT 22.5 1.3E+02 0.0029 33.5 5.1 71 175-256 603-683 (1054)
339 cd06533 Glyco_transf_WecG_TagA 22.5 4.6E+02 0.0099 22.5 7.5 38 172-210 32-69 (171)
340 PF04244 DPRP: Deoxyribodipyri 22.4 1.8E+02 0.0038 26.7 5.1 50 172-224 48-101 (224)
341 smart00463 SMR Small MutS-rela 22.3 1.5E+02 0.0033 21.8 4.0 44 170-213 13-65 (80)
342 PF13905 Thioredoxin_8: Thiore 22.1 1.8E+02 0.004 21.4 4.5 44 171-217 19-63 (95)
343 cd06167 LabA_like LabA_like pr 22.0 4.3E+02 0.0093 21.4 8.4 72 173-251 52-129 (149)
344 PF05226 CHASE2: CHASE2 domain 21.9 2.6E+02 0.0057 25.8 6.4 15 129-143 40-55 (310)
345 TIGR01380 glut_syn glutathione 21.6 1.6E+02 0.0036 27.8 4.9 79 170-249 15-112 (312)
346 cd00860 ThrRS_anticodon ThrRS 21.6 2.9E+02 0.0064 20.0 5.5 46 199-255 16-61 (91)
347 PRK12938 acetyacetyl-CoA reduc 21.5 1.7E+02 0.0037 25.5 4.7 37 176-212 17-53 (246)
348 PF08496 Peptidase_S49_N: Pept 21.4 2E+02 0.0043 25.0 5.0 20 25-44 9-28 (155)
349 PF02635 DrsE: DsrE/DsrF-like 21.3 2.8E+02 0.006 21.1 5.5 63 169-249 57-120 (122)
350 COG5137 Histone chaperone invo 21.1 16 0.00036 33.8 -1.8 75 185-260 90-165 (279)
351 PF08139 LPAM_1: Prokaryotic m 21.0 89 0.0019 19.2 1.9 9 45-53 17-25 (25)
352 TIGR03103 trio_acet_GNAT GNAT- 20.9 8.4E+02 0.018 25.2 10.3 104 111-219 175-317 (547)
353 COG0726 CDA1 Predicted xylanas 20.9 1.1E+02 0.0024 26.6 3.4 47 175-221 80-131 (267)
354 cd06602 GH31_MGAM_SI_GAA This 20.9 1.3E+02 0.0028 29.0 4.1 62 110-194 24-87 (339)
355 PRK12743 oxidoreductase; Provi 20.8 1.6E+02 0.0035 26.0 4.5 22 176-197 16-37 (256)
356 PF00479 G6PD_N: Glucose-6-pho 20.8 88 0.0019 27.6 2.7 36 185-221 104-143 (183)
357 TIGR02634 xylF D-xylose ABC tr 20.7 4.3E+02 0.0094 24.1 7.5 17 176-192 69-85 (302)
358 COG5510 Predicted small secret 20.6 1.1E+02 0.0024 21.3 2.6 17 36-52 7-23 (44)
359 cd06525 GH25_Lyc-like Lyc mura 20.6 1.8E+02 0.0039 25.1 4.7 63 110-196 64-127 (184)
360 PRK08535 translation initiatio 20.6 1.8E+02 0.004 27.7 5.1 39 175-213 133-173 (310)
361 PRK05557 fabG 3-ketoacyl-(acyl 20.6 1.7E+02 0.0037 25.1 4.5 23 176-198 19-41 (248)
362 PRK10892 D-arabinose 5-phospha 20.4 1.1E+02 0.0025 28.6 3.6 27 171-197 106-132 (326)
363 PRK07523 gluconate 5-dehydroge 20.4 1.5E+02 0.0033 26.0 4.2 35 176-211 24-58 (255)
364 PF02951 GSH-S_N: Prokaryotic 20.3 1.4E+02 0.003 24.7 3.7 28 169-196 14-41 (119)
365 PTZ00256 glutathione peroxidas 20.2 2.6E+02 0.0056 24.1 5.6 87 121-212 11-106 (183)
No 1
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=100.00 E-value=5e-79 Score=553.84 Aligned_cols=222 Identities=30% Similarity=0.494 Sum_probs=212.7
Q ss_pred CceeeccCCCCCCcccceehhhhcCCCCCCC-CchhhhHHHHhhhhhhhhHHHHHHHHHHHHHHHhhhCCCCCCCcEEEE
Q 044563 57 GVVELTKSSGDNNYCKLFALHAELNSLEADN-LPEICRGLAIRYIKEGQFARDLNLSIQIVESYFNTLTPSYNGLDVVLM 135 (290)
Q Consensus 57 ~~~~~~~~~~~~~~C~swrl~vE~nN~~~w~-vP~~C~~~v~~Y~~sgqY~~D~~~v~~~A~~y~~~~~~~~~g~~AvVf 135 (290)
.+++.+..+..++||+||||+||+||+++|+ ||++|++||++||+||||++|++.|+++|..|++++++++||++||||
T Consensus 3 ~~~~~~~~~~~~~~c~swr~~ve~~n~~~~~~vp~~c~~~v~~Y~~~~~Y~~D~~~v~~~a~~y~~~~~~~~dg~~A~V~ 82 (229)
T TIGR01675 3 EILMKEKLSIDYAYCRSWRLGVETNNIRDWDTVPAECKDYVEDYMTSKQYKRDVKRVVDEAYFYAKSLALSGDGMDAWIF 82 (229)
T ss_pred ceeehhcccCCcCcchhhhhhhhhccccccccCcHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHhhccCCCCcEEEE
Confidence 3555666667789999999999999999997 999999999999999999999999999999999999999999999999
Q ss_pred eccc-ccccChhhhhhccCC--CCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCC
Q 044563 136 DIDD-IFASSSKYSNLLIDR--VNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGY 212 (290)
Q Consensus 136 DIDe-tLsn~~y~~~~~~G~--~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy 212 (290)
|||| +|+|.|||+.|.+|. |++++|++|+..+++||+|++++|+++|+++|++|||+|||++.+|++|++||+++||
T Consensus 83 DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~ 162 (229)
T TIGR01675 83 DVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGF 162 (229)
T ss_pred ccccccccCHHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCC
Confidence 9999 999999999998874 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeecCcccCcchHHhhHHHHHHHHhcCCeEEEEeCCCcccccCCCCcceEEEccCCcccc
Q 044563 213 RGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGFHITGLISNQMDALIGQSLGKRVFKLPNPLYYS 278 (290)
Q Consensus 213 ~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GYrIv~~iGDq~sDl~G~~~g~r~fkLPNPmY~~ 278 (290)
++|++|+||+.++.++++++||+++|++|+++||||+++||||||||.|++.|+|+|||||||||+
T Consensus 163 ~~~~~LiLR~~~d~~~~~~~yKs~~R~~l~~~GYrIv~~iGDq~sDl~G~~~~~RtFKLPNPmYyi 228 (229)
T TIGR01675 163 TGWKHLILRGLEDSNKTVVTYKSEVRKSLMEEGYRIWGNIGDQWSDLLGSPPGRRTFKLPNPMYYV 228 (229)
T ss_pred CCcCeeeecCCCCCCchHhHHHHHHHHHHHhCCceEEEEECCChHHhcCCCccCceeeCCCCcccC
Confidence 999999999988888899999999999999999999999999999999999999999999999996
No 2
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=100.00 E-value=3.2e-75 Score=538.48 Aligned_cols=226 Identities=26% Similarity=0.395 Sum_probs=205.5
Q ss_pred hhhcCCCCceeec-c--C----CCCCCcccceehhhhcCCCCCCC-CchhhhHHHHhhhhhhhhHHHHHHHHHHHHHHHh
Q 044563 50 SCQNRSSGVVELT-K--S----SGDNNYCKLFALHAELNSLEADN-LPEICRGLAIRYIKEGQFARDLNLSIQIVESYFN 121 (290)
Q Consensus 50 ~c~~~~~~~~~~~-~--~----~~~~~~C~swrl~vE~nN~~~w~-vP~~C~~~v~~Y~~sgqY~~D~~~v~~~A~~y~~ 121 (290)
.|++....+++++ . . ...+.||.||||+||+||+++|+ ||++|++||++||+||||++|++.|+++|..|++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~swr~~vE~~n~~~w~~vP~~C~~~v~~Y~~ggqY~~D~~~v~~~a~~y~~ 94 (275)
T TIGR01680 15 QCHGAAFDMFPLRMNTGYGAGARDPEVKCASWRLAVEAHNIFGFETIPEECVDATAEYIEGEQYRSDSKTVNQQAYFFAR 94 (275)
T ss_pred ccccchhhhhcccccccccccccCCCCcccceeeeeeecccCCcccCcHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 4554444455543 1 1 24478999999999999999997 9999999999999999999999999999999998
Q ss_pred hhCCCCCCCcEEEEeccc-ccccChhhhhhccCC--CCccchH-HHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCc
Q 044563 122 TLTPSYNGLDVVLMDIDD-IFASSSKYSNLLIDR--VNVRGYI-ECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHE 197 (290)
Q Consensus 122 ~~~~~~~g~~AvVfDIDe-tLsn~~y~~~~~~G~--~~~~~w~-~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e 197 (290)
++.. +++||||||||| +|||.|||+.|.+|. |+++.|+ +|+..+++||+|++++||++++++|++|||||||+|
T Consensus 95 ~~~~--~~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e 172 (275)
T TIGR01680 95 DLEV--HEKDTFLFNIDGTALSNIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRLK 172 (275)
T ss_pred hCcC--CCCCEEEEECccccccCHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHHHHHHHHCCCEEEEEeCCch
Confidence 8765 468999999999 888999999998874 8999999 999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHhCCCCCCCcceeecCcc-cCcchHHhhHHHHHHHHhcCCeEEEEeCCCcccccCCCCc-ceEEEccCCc
Q 044563 198 GQRNATTELLISAGYRGWSSLIMRLDNE-MQMDSREYLSRRRTILQKEGFHITGLISNQMDALIGQSLG-KRVFKLPNPL 275 (290)
Q Consensus 198 ~~r~~T~~NL~~~Gy~~~d~LiLR~~~~-~~~~~~~yKs~~R~~i~~~GYrIv~~iGDq~sDl~G~~~g-~r~fkLPNPm 275 (290)
.+|++|++||+++||++|++|+||++++ ..+++++||+++|++++++||||+++||||||||.|++.| +|+|||||||
T Consensus 173 ~~r~aT~~NL~kaGy~~~~~LiLR~~~D~~~~~av~yKs~~R~~li~eGYrIv~~iGDq~sDl~G~~~g~~RtFKLPNP~ 252 (275)
T TIGR01680 173 DKQAVTEANLKKAGYHTWEKLILKDPQDNSAENAVEYKTAARAKLIQEGYNIVGIIGDQWNDLKGEHRGAIRSFKLPNPC 252 (275)
T ss_pred hHHHHHHHHHHHcCCCCcceeeecCCCCCccchhHHHHHHHHHHHHHcCceEEEEECCCHHhccCCCccCcceecCCCcc
Confidence 9999999999999999999999998765 4568999999999999999999999999999999999986 7999999999
Q ss_pred cc
Q 044563 276 YY 277 (290)
Q Consensus 276 Y~ 277 (290)
|-
T Consensus 253 ~~ 254 (275)
T TIGR01680 253 TT 254 (275)
T ss_pred cc
Confidence 85
No 3
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=100.00 E-value=7.6e-63 Score=447.94 Aligned_cols=210 Identities=27% Similarity=0.464 Sum_probs=182.6
Q ss_pred CCCcccceehhhhcCCCCCCCCchhhhHHHHhhhhhhhhHHHHHHHHHHHHHHHhhhCCCCCCCcEEEEeccc-ccccCh
Q 044563 67 DNNYCKLFALHAELNSLEADNLPEICRGLAIRYIKEGQFARDLNLSIQIVESYFNTLTPSYNGLDVVLMDIDD-IFASSS 145 (290)
Q Consensus 67 ~~~~C~swrl~vE~nN~~~w~vP~~C~~~v~~Y~~sgqY~~D~~~v~~~A~~y~~~~~~~~~g~~AvVfDIDe-tLsn~~ 145 (290)
...+|.||+++||+|| .+|++ ++|++++.. |+++||.+|+..++.+|..|+..+...+++|+|||||||| +|+|.+
T Consensus 12 ~~~~c~s~~~~~e~~~-~~~~~-~~~~~~~~~-~~~~q~~~e~~a~~~~a~~~a~~~~~~~~~~~avv~DIDeTvLsn~~ 88 (229)
T PF03767_consen 12 AALYCASWRLAVETNN-ANWTV-AECVEYVAD-VTWGQYSAEYKALVDQAYNYAKSRLDEADKPPAVVFDIDETVLSNSP 88 (229)
T ss_dssp ------TCCSSHHHHH-----H-HHHHHTTHH-HHHHHHEHHHHHHHHHHHHHHHHHHHHHTSEEEEEEESBTTTEEHHH
T ss_pred HHhhhhhccchhhhcc-hHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHhccCCCcEEEEECCcccccCHH
Confidence 3579999999999999 99999 999999999 9999999999999999999999988777899999999999 688888
Q ss_pred hhhhhccCC--CCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecC
Q 044563 146 KYSNLLIDR--VNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLD 223 (290)
Q Consensus 146 y~~~~~~G~--~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~ 223 (290)
|+..+.++. |+++.|++|+..++++|||++++|+++++++|++|||||||++.+|++|++||+++||++|++|+||++
T Consensus 89 y~~~~~~~~~~~~~~~w~~wv~~~~~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~~~~~l~lr~~ 168 (229)
T PF03767_consen 89 YYAYLIFGGESFSPEDWDEWVASGKAPAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFPGWDHLILRPD 168 (229)
T ss_dssp HHHHHHHHTHHH-CCHHHHHHHCTGGEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTSTBSCGEEEEE
T ss_pred HHHHHhhccCCCChHHHHHHHhcccCcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCCccchhccccc
Confidence 877766553 899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc-cCcchHHhhHHHHHHHHhcCCeEEEEeCCCcccccC----CCCcceEEEccCCccccc
Q 044563 224 NE-MQMDSREYLSRRRTILQKEGFHITGLISNQMDALIG----QSLGKRVFKLPNPLYYSF 279 (290)
Q Consensus 224 ~~-~~~~~~~yKs~~R~~i~~~GYrIv~~iGDq~sDl~G----~~~g~r~fkLPNPmY~~w 279 (290)
++ ..++++.||+++|++|+++||+||++|||||+||.| +..|+|+|||||||||+|
T Consensus 169 ~~~~~~~~~~yK~~~r~~i~~~Gy~Ii~~iGD~~~D~~~~~~~~~~~~r~f~lPNp~Yg~w 229 (229)
T PF03767_consen 169 KDPSKKSAVEYKSERRKEIEKKGYRIIANIGDQLSDFSGAKTAGARAERWFKLPNPMYGSW 229 (229)
T ss_dssp SSTSS------SHHHHHHHHHTTEEEEEEEESSGGGCHCTHHHHHHHTTEEE-TTSSSSHH
T ss_pred cccccccccccchHHHHHHHHcCCcEEEEeCCCHHHhhcccccccccceEEEcCCCCCCCC
Confidence 87 666789999999999999999999999999999999 666899999999999999
No 4
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=100.00 E-value=3.3e-44 Score=332.69 Aligned_cols=189 Identities=15% Similarity=0.242 Sum_probs=166.3
Q ss_pred hHHHHhhhhhhhhHHHHHHHHHHHHHHHhhhCCC-CCCCcEEEEeccc-ccccChhhhhhccC--CCCccchHHHHHhhc
Q 044563 93 RGLAIRYIKEGQFARDLNLSIQIVESYFNTLTPS-YNGLDVVLMDIDD-IFASSSKYSNLLID--RVNVRGYIECIEEAK 168 (290)
Q Consensus 93 ~~~v~~Y~~sgqY~~D~~~v~~~A~~y~~~~~~~-~~g~~AvVfDIDe-tLsn~~y~~~~~~G--~~~~~~w~~Wv~~~~ 168 (290)
+..+.+|++|++|++++.++++.|+.++++.... .++|+|||||||| +|+|+||+..+..+ .|+++.|++|+..+.
T Consensus 37 ~~~~~w~q~S~Ey~al~~q~~n~A~~~~~~~~~~~~~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~~~ 116 (266)
T TIGR01533 37 TMSVAWMQRSAEYKALYLQAYNLAKMRLDNNLKKVKDKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQAAQ 116 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHcCC
Confidence 5689999999999999999999999999877643 5778899999999 77999987665543 389999999999999
Q ss_pred CcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCC--CcceeecCcccCcchHHhhHHHHHHHHhcCC
Q 044563 169 HLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGW--SSLIMRLDNEMQMDSREYLSRRRTILQKEGF 246 (290)
Q Consensus 169 apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~--d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GY 246 (290)
++++||+++|+++|+++|++|+|+|||++..++.|++||+++|++.+ +++++|+.. .+|..+|+.|+ +||
T Consensus 117 a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~~~-------~~K~~rr~~I~-~~y 188 (266)
T TIGR01533 117 AKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKKDK-------SSKESRRQKVQ-KDY 188 (266)
T ss_pred CCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCCCC-------CCcHHHHHHHH-hcC
Confidence 99999999999999999999999999999999999999999999865 689999532 26888888775 689
Q ss_pred eEEEEeCCCcccccCC-------------------CCcceEEEccCCccccccccccccCCC
Q 044563 247 HITGLISNQMDALIGQ-------------------SLGKRVFKLPNPLYYSFDHHIESTKFP 289 (290)
Q Consensus 247 rIv~~iGDq~sDl~G~-------------------~~g~r~fkLPNPmY~~we~~~~~~~~~ 289 (290)
+|+++||||++||.+. .||+++|+|||||||+||+..-..+|+
T Consensus 189 ~Ivl~vGD~~~Df~~~~~~~~~~~~r~~~v~~~~~~fG~~~i~lPNp~YG~we~~~~~~~~~ 250 (266)
T TIGR01533 189 EIVLLFGDNLLDFDDFFYKDKESQDRQALVLQNQEKFGKKFIILPNPMYGSWEGAIYKGNYK 250 (266)
T ss_pred CEEEEECCCHHHhhhhhccCcchHHHHHHHHHHHHHhCCCeEEecCCCCcchhhhhcCCCCC
Confidence 9999999999999763 269999999999999999988666554
No 5
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=100.00 E-value=2.5e-38 Score=286.77 Aligned_cols=183 Identities=15% Similarity=0.252 Sum_probs=157.8
Q ss_pred hHHHHhhhhhhhhHHHHHHHHHHHHHHHh-hhCCCCCCCcEEEEeccc-ccccChhhhhhc-cC-CCCccchHHHHHhhc
Q 044563 93 RGLAIRYIKEGQFARDLNLSIQIVESYFN-TLTPSYNGLDVVLMDIDD-IFASSSKYSNLL-ID-RVNVRGYIECIEEAK 168 (290)
Q Consensus 93 ~~~v~~Y~~sgqY~~D~~~v~~~A~~y~~-~~~~~~~g~~AvVfDIDe-tLsn~~y~~~~~-~G-~~~~~~w~~Wv~~~~ 168 (290)
.-.|.+|..+++|++...+.++.|..-++ +.++..++++|||+|||| +|+|+||..... -+ .|+|++|++||.+++
T Consensus 41 ~~~v~w~Q~s~E~~AL~~Q~yn~Ak~~~d~~~k~~k~K~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe~Wd~wV~a~~ 120 (274)
T COG2503 41 TMSVNWYQQSAEYQALYLQAYNSAKIALDTQAKKKKGKKKAVVLDLDETVLDNSAYQGYQVLNNKGFTPETWDKWVQAKK 120 (274)
T ss_pred hhhHHHhhhhHHHHHHHHHHhhhHHHHHHhhhccccCCCceEEEecchHhhcCccccchhhhcCCCCCccchHHHHhhcc
Confidence 45799999999999999999999999999 666777788899999999 788888743322 12 399999999999999
Q ss_pred CcCcHHHHHHHHHHHhCCCeEEEecCCCccc-hHHHHHHHHhCCCCCC--CcceeecCcccCcchHHhhHHHHHHHHhcC
Q 044563 169 HLKHMFTLKLFMKLQVRGWPVILLSRKHEGQ-RNATTELLISAGYRGW--SSLIMRLDNEMQMDSREYLSRRRTILQKEG 245 (290)
Q Consensus 169 apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~-r~~T~~NL~~~Gy~~~--d~LiLR~~~~~~~~~~~yKs~~R~~i~~~G 245 (290)
+.|+||+++|++++.++|++|||||+|+.+. ...|++||++.|+|+. ++++|..+.. -|+.||+++ +++
T Consensus 121 sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~~~~~~~llkk~~k-------~Ke~R~~~v-~k~ 192 (274)
T COG2503 121 SKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLPQVLESHLLLKKDKK-------SKEVRRQAV-EKD 192 (274)
T ss_pred cccCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHHcCcccccccceEEeeCCC-------cHHHHHHHH-hhc
Confidence 9999999999999999999999999998766 9999999999999964 5777773321 477777666 579
Q ss_pred CeEEEEeCCCcccccCC------------------CCcceEEEccCCccccccccc
Q 044563 246 FHITGLISNQMDALIGQ------------------SLGKRVFKLPNPLYYSFDHHI 283 (290)
Q Consensus 246 YrIv~~iGDq~sDl~G~------------------~~g~r~fkLPNPmY~~we~~~ 283 (290)
|.||+.|||++.||... .||++++.|||||||.||.-|
T Consensus 193 ~~iVm~vGDNl~DF~d~~~k~~~~eR~Alv~~~~~~FGk~~Ii~pN~~YG~wE~gi 248 (274)
T COG2503 193 YKIVMLVGDNLDDFGDNAYKKAEAERRALVKQNQKKFGKKFIILPNSMYGGWEGGI 248 (274)
T ss_pred cceeeEecCchhhhcchhhhhhhHHHHHHHHHHHHHhCceEEEecCCccCcccchh
Confidence 99999999999999763 279999999999999999877
No 6
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.79 E-value=2.2e-19 Score=164.42 Aligned_cols=142 Identities=15% Similarity=0.151 Sum_probs=103.6
Q ss_pred CCCc-EEEEeccc-ccccChh--hhhhccCC----C--CccchHHHHHh--hcCcCcHHHHHHHHHHHhCCCeEEEecCC
Q 044563 128 NGLD-VVLMDIDD-IFASSSK--YSNLLIDR----V--NVRGYIECIEE--AKHLKHMFTLKLFMKLQVRGWPVILLSRK 195 (290)
Q Consensus 128 ~g~~-AvVfDIDe-tLsn~~y--~~~~~~G~----~--~~~~w~~Wv~~--~~apaip~~l~l~~~l~~~Gv~V~~iSgR 195 (290)
++|+ ||+||||| +|+|+|| +.++.|+. | ++.-|+.|.+. ..+.+.|++++|+++++++|++|+|||||
T Consensus 60 ~~~p~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR 139 (237)
T PRK11009 60 GRPPMAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGR 139 (237)
T ss_pred CCCCcEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4444 99999999 7777785 33333321 4 33446666653 34555666999999999999999999999
Q ss_pred CccchHHHHHHHHh-CCCC--CCCcceeecCcccCcchHHhhHHHHHHHHhcCCeEEEEeCCCcccccCC----CCcceE
Q 044563 196 HEGQRNATTELLIS-AGYR--GWSSLIMRLDNEMQMDSREYLSRRRTILQKEGFHITGLISNQMDALIGQ----SLGKRV 268 (290)
Q Consensus 196 ~e~~r~~T~~NL~~-~Gy~--~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GYrIv~~iGDq~sDl~G~----~~g~r~ 268 (290)
++..++.|.+||.+ .|+| .+..+++-.+. .+|...+..+++ +.+...+||+++||.+. -.+-|.
T Consensus 140 ~~~k~~~t~~~Llk~~gip~~~~f~vil~gd~-------~~K~~K~~~l~~--~~i~I~IGDs~~Di~aA~~AGi~~I~v 210 (237)
T PRK11009 140 TATKTETVSKTLADDFHIPADNMNPVIFAGDK-------PGQYTKTQWLKK--KNIRIFYGDSDNDITAAREAGARGIRI 210 (237)
T ss_pred CCcccHHHHHHHHHHcCCCcccceeEEEcCCC-------CCCCCHHHHHHh--cCCeEEEcCCHHHHHHHHHcCCcEEEE
Confidence 99999999999997 8994 33355554332 155566666654 55677899999999764 346778
Q ss_pred EEccCCcccc
Q 044563 269 FKLPNPLYYS 278 (290)
Q Consensus 269 fkLPNPmY~~ 278 (290)
+..|||+|-+
T Consensus 211 ~~G~~~~~~~ 220 (237)
T PRK11009 211 LRAANSTYKP 220 (237)
T ss_pred ecCCCCCCCc
Confidence 8999999964
No 7
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.55 E-value=1.8e-14 Score=132.09 Aligned_cols=133 Identities=17% Similarity=0.139 Sum_probs=94.4
Q ss_pred CcEEEEeccc-ccccChhhhhhccCCC---------CccchHHHHHhhcCcCcHH--HHHHHHHHHhCCCeEEEecCCCc
Q 044563 130 LDVVLMDIDD-IFASSSKYSNLLIDRV---------NVRGYIECIEEAKHLKHMF--TLKLFMKLQVRGWPVILLSRKHE 197 (290)
Q Consensus 130 ~~AvVfDIDe-tLsn~~y~~~~~~G~~---------~~~~w~~Wv~~~~apaip~--~l~l~~~l~~~Gv~V~~iSgR~e 197 (290)
|.||+||||| +|+|+|+. .++...+ ++..|+.|.+...+..+|. +.+|+++++++|++|+++|||.+
T Consensus 63 p~aViFDlDgTLlDSs~~~-~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr~~ 141 (237)
T TIGR01672 63 PIAVSFDIDDTVLFSSPGF-WRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTGRTP 141 (237)
T ss_pred CeEEEEeCCCccccCcHHH-hCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 4499999999 77778864 2211112 4467999998877766666 99999999999999999999988
Q ss_pred cchHHHHHHHHh-CCCCCCCcceeecCcccCcchHHhhHHHHHHHHhcCCeEEEEeCCCcccccCC-CCcceEEE
Q 044563 198 GQRNATTELLIS-AGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGFHITGLISNQMDALIGQ-SLGKRVFK 270 (290)
Q Consensus 198 ~~r~~T~~NL~~-~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GYrIv~~iGDq~sDl~G~-~~g~r~fk 270 (290)
..++.|.++|.+ .|++.+..+++..+.... .|...+..+++ +.|+.++||+.+|+.+. ..|-+.+-
T Consensus 142 ~k~~~~a~~ll~~lGi~~~f~~i~~~d~~~~-----~Kp~~~~~l~~--~~i~i~vGDs~~DI~aAk~AGi~~I~ 209 (237)
T TIGR01672 142 GKTDTVSKTLAKNFHIPAMNPVIFAGDKPGQ-----YQYTKTQWIQD--KNIRIHYGDSDNDITAAKEAGARGIR 209 (237)
T ss_pred CcCHHHHHHHHHHhCCchheeEEECCCCCCC-----CCCCHHHHHHh--CCCeEEEeCCHHHHHHHHHCCCCEEE
Confidence 778888888875 899876566665433211 23333444443 66678999999999764 33444333
No 8
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=99.14 E-value=2.3e-10 Score=95.82 Aligned_cols=75 Identities=8% Similarity=0.157 Sum_probs=62.6
Q ss_pred cEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchH---------
Q 044563 131 DVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRN--------- 201 (290)
Q Consensus 131 ~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~--------- 201 (290)
.+|+|||||||.+... +.|. ..++.+++++.++.++++|+.|+|+|||+...+.
T Consensus 2 K~i~~DiDGTL~~~~~------~~y~-----------~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~ 64 (126)
T TIGR01689 2 KRLVMDLDNTITLTEN------GDYA-----------NVAPILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIH 64 (126)
T ss_pred CEEEEeCCCCcccCCC------Cccc-----------ccccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchh
Confidence 4899999998865310 1121 1468899999999999999999999999988776
Q ss_pred ---HHHHHHHhCCCCCCCcceeecC
Q 044563 202 ---ATTELLISAGYRGWSSLIMRLD 223 (290)
Q Consensus 202 ---~T~~NL~~~Gy~~~d~LiLR~~ 223 (290)
.|.+||.++|+| ++.|+||.+
T Consensus 65 ~~~~t~~wL~k~~ip-Yd~l~~~kp 88 (126)
T TIGR01689 65 TLPIIILWLNQHNVP-YDEIYVGKP 88 (126)
T ss_pred hHHHHHHHHHHcCCC-CceEEeCCC
Confidence 999999999996 899999985
No 9
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=99.09 E-value=1e-09 Score=94.46 Aligned_cols=126 Identities=19% Similarity=0.287 Sum_probs=90.5
Q ss_pred EEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHh--
Q 044563 132 VVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLIS-- 209 (290)
Q Consensus 132 AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~-- 209 (290)
.|++||||||.++.- .|..-+. .++....|++.+++++++++|++|+|+|||+..+...|.++|..
T Consensus 1 iVisDIDGTL~~sd~-----~~~~~~~-------~~~~~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~ 68 (157)
T smart00775 1 IVISDIDGTITKSDV-----LGHVVPI-------IGKDWTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIK 68 (157)
T ss_pred CEEEecCCCCccccc-----ccccccc-------cccCcCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhh
Confidence 489999998887632 1111110 12233468999999999999999999999999999999999999
Q ss_pred ---CCCCCCCcceeecCccc--------CcchHHhhHHHHHHHHh----cCCeEEEEeCCCccccc-----CCCCcceEE
Q 044563 210 ---AGYRGWSSLIMRLDNEM--------QMDSREYLSRRRTILQK----EGFHITGLISNQMDALI-----GQSLGKRVF 269 (290)
Q Consensus 210 ---~Gy~~~d~LiLR~~~~~--------~~~~~~yKs~~R~~i~~----~GYrIv~~iGDq~sDl~-----G~~~g~r~f 269 (290)
.++|. ..+++++.... ......+|.+.-+.|.+ ++..+++-+||..+|.. |.+. .|.|
T Consensus 69 ~~~~~lp~-g~li~~~g~~~~~~~~e~i~~~~~~~K~~~l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~~~gi~~-~~i~ 146 (157)
T smart00775 69 QDGHNLPH-GPVLLSPDRLFAALHREVISKKPEVFKIACLRDIKSLFPPQGNPFYAGFGNRITDVISYSAVGIPP-SRIF 146 (157)
T ss_pred hccccCCC-ceEEEcCCcchhhhhcccccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCchhHHHHHHcCCCh-hhEE
Confidence 44653 36777765322 23345688888777876 48899999999999985 4443 4555
Q ss_pred Ec
Q 044563 270 KL 271 (290)
Q Consensus 270 kL 271 (290)
..
T Consensus 147 ~i 148 (157)
T smart00775 147 TI 148 (157)
T ss_pred EE
Confidence 43
No 10
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.02 E-value=2.1e-09 Score=99.73 Aligned_cols=132 Identities=13% Similarity=0.136 Sum_probs=96.1
Q ss_pred CCCcEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHH
Q 044563 128 NGLDVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELL 207 (290)
Q Consensus 128 ~g~~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL 207 (290)
.++++++||+||||..+.. ..+ + +|.....+++.|+++++++.|+++|++++++|||++..+..|++||
T Consensus 156 ~~~~~~~~D~dgtl~~~~~--------~~~--~-~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l 224 (300)
T PHA02530 156 GLPKAVIFDIDGTLAKMGG--------RSP--Y-DWTKVKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWL 224 (300)
T ss_pred CCCCEEEEECCCcCcCCCC--------CCc--c-chhhcccCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHH
Confidence 3467999999997776532 111 1 4666778899999999999999999999999999999999999999
Q ss_pred HhCC-CC----C--CCcceeecCcccCcchHHhhHHHHHHHHhcCCeEEEEeCCCcccccCC-CCcceEEEc
Q 044563 208 ISAG-YR----G--WSSLIMRLDNEMQMDSREYLSRRRTILQKEGFHITGLISNQMDALIGQ-SLGKRVFKL 271 (290)
Q Consensus 208 ~~~G-y~----~--~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GYrIv~~iGDq~sDl~G~-~~g~r~fkL 271 (290)
...| |- + ...++||......++ ...+...-+++....+.+...|||...|..+. ..|-.++-.
T Consensus 225 ~~~~~~f~~i~~~~~~~~~~~~~~~~kp~-p~~~~~~l~~~~~~~~~~~~~vgD~~~d~~~a~~~Gi~~i~v 295 (300)
T PHA02530 225 RQTDIWFDDLIGRPPDMHFQREQGDKRPD-DVVKEEIFWEKIAPKYDVLLAVDDRDQVVDMWRRIGLECWQV 295 (300)
T ss_pred HHcCCchhhhhCCcchhhhcccCCCCCCc-HHHHHHHHHHHhccCceEEEEEcCcHHHHHHHHHhCCeEEEe
Confidence 9998 21 2 235678876554443 33444444444444689999999999999764 234444433
No 11
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=98.98 E-value=2.5e-09 Score=92.69 Aligned_cols=126 Identities=21% Similarity=0.281 Sum_probs=92.2
Q ss_pred EEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhC-
Q 044563 132 VVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISA- 210 (290)
Q Consensus 132 AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~- 210 (290)
+||+|||||+..+.- .|...+ ..+++-.-|++.+||++++++|++|+|||+|+..+...|.+||..+
T Consensus 1 VVvsDIDGTiT~SD~-----~G~i~~-------~~G~d~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~ 68 (157)
T PF08235_consen 1 VVVSDIDGTITKSDV-----LGHILP-------ILGKDWTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQ 68 (157)
T ss_pred CEEEeccCCcCccch-----hhhhhh-------ccCchhhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHH
Confidence 489999997666531 122111 1233445688999999999999999999999999999999999999
Q ss_pred ----CCCCCCcceeecCc--------ccCcchHHhhHHHHHHHHhc----CCeEEEEeCCCccccc-----CCCCcceEE
Q 044563 211 ----GYRGWSSLIMRLDN--------EMQMDSREYLSRRRTILQKE----GFHITGLISNQMDALI-----GQSLGKRVF 269 (290)
Q Consensus 211 ----Gy~~~d~LiLR~~~--------~~~~~~~~yKs~~R~~i~~~----GYrIv~~iGDq~sDl~-----G~~~g~r~f 269 (290)
++|.. -+++.+.. --.++..+||...-+.|++. +-.+.+-+|+..+|.. |.+ -.|.|
T Consensus 69 q~~~~lP~G-pv~~sP~~l~~al~rEvi~~~p~~fK~~~L~~l~~~f~~~~~pf~agfGN~~tDv~aY~~vGip-~~rIF 146 (157)
T PF08235_consen 69 QQGHNLPDG-PVLLSPDSLFSALHREVISKDPEEFKIACLRDLRALFPPDGNPFYAGFGNRSTDVIAYKAVGIP-KSRIF 146 (157)
T ss_pred hCCccCCCC-CEEECCcchhhhhhccccccChHHHHHHHHHHHHHhcCCCCCeEEEecCCcHHHHHHHHHcCCC-hhhEE
Confidence 88832 33443221 11334568999999999876 8999999999999985 444 24566
Q ss_pred Ec
Q 044563 270 KL 271 (290)
Q Consensus 270 kL 271 (290)
.+
T Consensus 147 ~I 148 (157)
T PF08235_consen 147 II 148 (157)
T ss_pred EE
Confidence 43
No 12
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=98.71 E-value=3.2e-08 Score=78.13 Aligned_cols=118 Identities=14% Similarity=0.111 Sum_probs=74.6
Q ss_pred EEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCC
Q 044563 132 VVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAG 211 (290)
Q Consensus 132 AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~G 211 (290)
++|||+||||.+..-+ .. . .....+.|++++++++++++|++|+++|||. +.....++...|
T Consensus 1 ~~vfD~D~tl~~~~~~--------~~--~-----~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~---~~~~~~~~~~~~ 62 (139)
T cd01427 1 AVLFDLDGTLLDSEPG--------IA--E-----IEELELYPGVKEALKELKEKGIKLALATNKS---RREVLELLEELG 62 (139)
T ss_pred CeEEccCCceEccCcc--------cc--c-----cccCCcCcCHHHHHHHHHHCCCeEEEEeCch---HHHHHHHHHHcC
Confidence 4899999987664211 00 0 2345788999999999999999999999998 777888888888
Q ss_pred CCCCCcceeecCc-ccC----------------cchHHhhHHHHHHHHhcCCeEEEEeCCCcccccCCCC-cceE
Q 044563 212 YRGWSSLIMRLDN-EMQ----------------MDSREYLSRRRTILQKEGFHITGLISNQMDALIGQSL-GKRV 268 (290)
Q Consensus 212 y~~~d~LiLR~~~-~~~----------------~~~~~yKs~~R~~i~~~GYrIv~~iGDq~sDl~G~~~-g~r~ 268 (290)
+.....-++-..+ ... ++....+....+++. ..+.-+..+||+.+|+.-... |.++
T Consensus 63 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~igD~~~d~~~~~~~g~~~ 136 (139)
T cd01427 63 LDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDKLLAALKLLG-VDPEEVLMVGDSLNDIEMAKAAGGLG 136 (139)
T ss_pred CchhhhheeccchhhhhcccccccccccccccCCCCHHHHHHHHHHcC-CChhhEEEeCCCHHHHHHHHHcCCce
Confidence 7422222221111 111 222223333333332 235668899999999875433 4443
No 13
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=98.33 E-value=2e-06 Score=72.42 Aligned_cols=126 Identities=13% Similarity=0.194 Sum_probs=78.6
Q ss_pred cEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccc-----------
Q 044563 131 DVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQ----------- 199 (290)
Q Consensus 131 ~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~----------- 199 (290)
++++||+||||.+..- +.| ...|++| .+.|++++++++|+++|++++++||.+...
T Consensus 1 ~~~~~d~dgtl~~~~~------~~~-~~~~~~~------~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~ 67 (147)
T TIGR01656 1 PALFLDRDGVINEDTV------SDY-PRSLDDW------QLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRA 67 (147)
T ss_pred CeEEEeCCCceeccCC------ccc-CCCHHHe------EEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHH
Confidence 4899999998887642 112 1235544 578999999999999999999999976421
Q ss_pred -hHHHHHHHHhCCCCCCCcceeec----Cc-ccCcchHHhhHHHHHHHHhcCCeE--EEEeCCCcccccCC-CCcceEEE
Q 044563 200 -RNATTELLISAGYRGWSSLIMRL----DN-EMQMDSREYLSRRRTILQKEGFHI--TGLISNQMDALIGQ-SLGKRVFK 270 (290)
Q Consensus 200 -r~~T~~NL~~~Gy~~~d~LiLR~----~~-~~~~~~~~yKs~~R~~i~~~GYrI--v~~iGDq~sDl~G~-~~g~r~fk 270 (290)
...+.+.|+..|... ...+... +. ..+++..+ ..+..++..|-.. +.+|||...|+.+. ..|-+++-
T Consensus 68 ~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~~~~~KP~~~---~~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~~v~ 143 (147)
T TIGR01656 68 PNGRVLELLRQLGVAV-DGVLFCPHHPADNCSCRKPKPG---LILEALKRLGVDASRSLVVGDRLRDLQAARNAGLAAVL 143 (147)
T ss_pred HHHHHHHHHHhCCCce-eEEEECCCCCCCCCCCCCCCHH---HHHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCCEEE
Confidence 245566788888751 1122211 11 11222221 1222333334333 67899999999875 45777776
Q ss_pred ccC
Q 044563 271 LPN 273 (290)
Q Consensus 271 LPN 273 (290)
+|.
T Consensus 144 i~~ 146 (147)
T TIGR01656 144 LVD 146 (147)
T ss_pred ecC
Confidence 663
No 14
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=98.28 E-value=3.3e-06 Score=69.15 Aligned_cols=120 Identities=12% Similarity=0.133 Sum_probs=73.2
Q ss_pred cEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccc-----hHHHHH
Q 044563 131 DVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQ-----RNATTE 205 (290)
Q Consensus 131 ~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~-----r~~T~~ 205 (290)
++++||+||||.+...+ .++ |. ...+.|++.+++++|+++|++++++||+++.. ++...+
T Consensus 1 k~~~~D~dgtL~~~~~~-------~~~--~~------~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~ 65 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVPY-------VDD--ED------ERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVAR 65 (132)
T ss_pred CEEEEeCCCceecCCCC-------CCC--HH------HheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHH
Confidence 48999999988864211 122 32 23678999999999999999999999998544 455677
Q ss_pred HHHhCCCCCCCcceeecCcccCcchHHhhHHHHHHHH-hcCCeEEEEeCC-CcccccCC-CCcceEE
Q 044563 206 LLISAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQ-KEGFHITGLISN-QMDALIGQ-SLGKRVF 269 (290)
Q Consensus 206 NL~~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~-~~GYrIv~~iGD-q~sDl~G~-~~g~r~f 269 (290)
.|+..|.. ....+... ....++.-.|+...+ ++. -. ..=+.+||| ...|+.+. ..|-+++
T Consensus 66 ~l~~~~l~-~~~~~~~~-~~~KP~~~~~~~~~~-~~~~~~-~~~~v~IGD~~~~Di~~A~~~Gi~~i 128 (132)
T TIGR01662 66 RLEELGVP-IDVLYACP-HCRKPKPGMFLEALK-RFNEID-PEESVYVGDQDLTDLQAAKRAGLAFI 128 (132)
T ss_pred HHHHCCCC-EEEEEECC-CCCCCChHHHHHHHH-HcCCCC-hhheEEEcCCCcccHHHHHHCCCeEE
Confidence 78888875 22223222 111222223433322 221 11 122567999 58999765 3454443
No 15
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=98.28 E-value=4.7e-06 Score=66.74 Aligned_cols=57 Identities=21% Similarity=0.315 Sum_probs=49.1
Q ss_pred EEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCC
Q 044563 133 VLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGY 212 (290)
Q Consensus 133 vVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy 212 (290)
++||+||||-+. ..++|++.+++++|+++|.+++|+||.+...++.-.+-|++.|+
T Consensus 1 ~l~D~dGvl~~g------------------------~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi 56 (101)
T PF13344_consen 1 FLFDLDGVLYNG------------------------NEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGI 56 (101)
T ss_dssp EEEESTTTSEET------------------------TEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTT
T ss_pred CEEeCccEeEeC------------------------CCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCc
Confidence 689999987652 25699999999999999999999999999999999999999999
Q ss_pred C
Q 044563 213 R 213 (290)
Q Consensus 213 ~ 213 (290)
+
T Consensus 57 ~ 57 (101)
T PF13344_consen 57 P 57 (101)
T ss_dssp T
T ss_pred C
Confidence 7
No 16
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=98.06 E-value=2.5e-05 Score=70.36 Aligned_cols=100 Identities=19% Similarity=0.226 Sum_probs=62.5
Q ss_pred CcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCC-CcceeecCcccCcc-hHHhhHHHHHHHHhcCC
Q 044563 169 HLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGW-SSLIMRLDNEMQMD-SREYLSRRRTILQKEGF 246 (290)
Q Consensus 169 apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~-d~LiLR~~~~~~~~-~~~yKs~~R~~i~~~GY 246 (290)
..+.||+.++++.|+++|+++.++||-. +.....-|...|+..+ +.++--.+....|+ .-.|. ..++..|.
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~---~~~~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~----~~~~~~~~ 164 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAH---PHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQ----AVAEHTGL 164 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcC---HHHHHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHH----HHHHHcCC
Confidence 6789999999999999999999999954 3334445677786543 44443222222222 22232 22333343
Q ss_pred eE--EEEeCCCcccccCC-CCcceE-EEccCCc
Q 044563 247 HI--TGLISNQMDALIGQ-SLGKRV-FKLPNPL 275 (290)
Q Consensus 247 rI--v~~iGDq~sDl~G~-~~g~r~-fkLPNPm 275 (290)
.. ...|||...|+.+. ..|-++ +-++||.
T Consensus 165 ~p~~~l~igDs~~di~aA~~aG~~~~~~v~~~~ 197 (224)
T PRK14988 165 KAERTLFIDDSEPILDAAAQFGIRYCLGVTNPD 197 (224)
T ss_pred ChHHEEEEcCCHHHHHHHHHcCCeEEEEEeCCC
Confidence 32 56899999999765 356654 4467754
No 17
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=98.04 E-value=2.2e-05 Score=72.43 Aligned_cols=63 Identities=16% Similarity=0.168 Sum_probs=52.9
Q ss_pred cEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhC
Q 044563 131 DVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISA 210 (290)
Q Consensus 131 ~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~ 210 (290)
++++||+||||-+... ....++|++.++++.|+++|.+++|+|||+...++...+-|++.
T Consensus 2 k~i~~D~DGtl~~~~~--------------------~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~ 61 (257)
T TIGR01458 2 KGVLLDISGVLYISDA--------------------KSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRL 61 (257)
T ss_pred CEEEEeCCCeEEeCCC--------------------cccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 3799999998865310 00126889999999999999999999999998888999999999
Q ss_pred CCC
Q 044563 211 GYR 213 (290)
Q Consensus 211 Gy~ 213 (290)
|++
T Consensus 62 g~~ 64 (257)
T TIGR01458 62 GFD 64 (257)
T ss_pred CCC
Confidence 996
No 18
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=98.00 E-value=4.5e-05 Score=66.37 Aligned_cols=98 Identities=14% Similarity=0.113 Sum_probs=62.2
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCC-CCcceeecCcccCcc-hHHhhHHHHHHHHhcC
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRG-WSSLIMRLDNEMQMD-SREYLSRRRTILQKEG 245 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~-~d~LiLR~~~~~~~~-~~~yKs~~R~~i~~~G 245 (290)
..++.|++.++++.|+++|+++.++||-+. ......|+..|+.. ++.++-...-...|. .-.|+... .+.|
T Consensus 90 ~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~---~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~----~~~~ 162 (198)
T TIGR01428 90 RLPPHPDVPAGLRALKERGYRLAILSNGSP---AMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLAL----EALG 162 (198)
T ss_pred cCCCCCCHHHHHHHHHHCCCeEEEEeCCCH---HHHHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHH----HHhC
Confidence 467889999999999999999999999663 44556677788753 344443322222222 22233322 2223
Q ss_pred C--eEEEEeCCCcccccCC-CCcceEEEcc
Q 044563 246 F--HITGLISNQMDALIGQ-SLGKRVFKLP 272 (290)
Q Consensus 246 Y--rIv~~iGDq~sDl~G~-~~g~r~fkLP 272 (290)
. .=+..|||...|+.+. ..|-+++-+.
T Consensus 163 ~~p~~~~~vgD~~~Di~~A~~~G~~~i~v~ 192 (198)
T TIGR01428 163 VPPDEVLFVASNPWDLGGAKKFGFKTAWVN 192 (198)
T ss_pred CChhhEEEEeCCHHHHHHHHHCCCcEEEec
Confidence 2 2256899999999875 3566555543
No 19
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=97.98 E-value=5.8e-06 Score=72.57 Aligned_cols=95 Identities=16% Similarity=0.193 Sum_probs=61.5
Q ss_pred hcCcCcHHHHHHHHHHHhCCCeEEEecCCCcc----chHHHHHHHHhC-CCCCCCcceeecCcccCcchHHhhHHHHHHH
Q 044563 167 AKHLKHMFTLKLFMKLQVRGWPVILLSRKHEG----QRNATTELLISA-GYRGWSSLIMRLDNEMQMDSREYLSRRRTIL 241 (290)
Q Consensus 167 ~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~----~r~~T~~NL~~~-Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i 241 (290)
...+|+||+++.+++|.+.|..+++||.|+.. ....|.+||.++ |...++.+++-.. |+ .+
T Consensus 70 ~~l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~~~~~~~~~~----------K~----~v 135 (191)
T PF06941_consen 70 SNLPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIPYDNLIFTGD----------KT----LV 135 (191)
T ss_dssp TT--B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHHHCCEEEESS----------GG----GC
T ss_pred cCCCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCchheEEEecC----------CC----eE
Confidence 36799999999999999999999999999865 578999999999 3223677777421 21 11
Q ss_pred HhcCCeEEEEeCCCcccccCC-CCcceEEEccCCcccccc
Q 044563 242 QKEGFHITGLISNQMDALIGQ-SLGKRVFKLPNPLYYSFD 280 (290)
Q Consensus 242 ~~~GYrIv~~iGDq~sDl~G~-~~g~r~fkLPNPmY~~we 280 (290)
+.. ..|.|+..-+... ..|-..+.+..|-=..++
T Consensus 136 ---~~D--vlIDD~~~n~~~~~~~g~~~iLfd~p~Nr~~~ 170 (191)
T PF06941_consen 136 ---GGD--VLIDDRPHNLEQFANAGIPVILFDQPYNRDES 170 (191)
T ss_dssp -----S--EEEESSSHHHSS-SSESSEEEEE--GGGTT--
T ss_pred ---ecc--EEecCChHHHHhccCCCceEEEEcCCCCCCCC
Confidence 223 4689988876542 236667888776544443
No 20
>PRK11587 putative phosphatase; Provisional
Probab=97.90 E-value=7.8e-05 Score=66.26 Aligned_cols=99 Identities=12% Similarity=0.089 Sum_probs=61.4
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCcccCc-chHHhhHHHHHHHHhcCC
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDNEMQM-DSREYLSRRRTILQKEGF 246 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~~~~~-~~~~yKs~~R~~i~~~GY 246 (290)
..++.||+.++++.|+++|+++.++||.+.. .+..-|...|+...+.++-.......| +...|. ..++..|-
T Consensus 81 ~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~---~~~~~l~~~~l~~~~~i~~~~~~~~~KP~p~~~~----~~~~~~g~ 153 (218)
T PRK11587 81 GITALPGAIALLNHLNKLGIPWAIVTSGSVP---VASARHKAAGLPAPEVFVTAERVKRGKPEPDAYL----LGAQLLGL 153 (218)
T ss_pred CceeCcCHHHHHHHHHHcCCcEEEEcCCCch---HHHHHHHhcCCCCccEEEEHHHhcCCCCCcHHHH----HHHHHcCC
Confidence 4678999999999999999999999997643 445667778875333333221111112 222222 22333332
Q ss_pred --eEEEEeCCCcccccCC-CCcceEEEccC
Q 044563 247 --HITGLISNQMDALIGQ-SLGKRVFKLPN 273 (290)
Q Consensus 247 --rIv~~iGDq~sDl~G~-~~g~r~fkLPN 273 (290)
.=..+|||...|+.+. ..|-+++-+.+
T Consensus 154 ~p~~~l~igDs~~di~aA~~aG~~~i~v~~ 183 (218)
T PRK11587 154 APQECVVVEDAPAGVLSGLAAGCHVIAVNA 183 (218)
T ss_pred CcccEEEEecchhhhHHHHHCCCEEEEECC
Confidence 2256899999999765 34655655544
No 21
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=97.88 E-value=0.00012 Score=64.57 Aligned_cols=96 Identities=14% Similarity=0.201 Sum_probs=60.4
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCcc-cCc-chHHhhHHHHHHHHhcC
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDNE-MQM-DSREYLSRRRTILQKEG 245 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~~-~~~-~~~~yKs~~R~~i~~~G 245 (290)
..++.||+.++++.|+++|+++.++||.. +..+..-|+..|+..+-..++-.++. .++ +...|. +.+..-|
T Consensus 80 ~~~~~~g~~~~l~~L~~~g~~~~i~S~~~---~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~----~~~~~~~ 152 (214)
T PRK13288 80 LVTEYETVYETLKTLKKQGYKLGIVTTKM---RDTVEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVL----KALELLG 152 (214)
T ss_pred hcccCcCHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHHcCChhceeEEEecCcCCCCCCCcHHHH----HHHHHcC
Confidence 34688999999999999999999999986 44566677888876543334332221 112 112222 2233233
Q ss_pred CeE--EEEeCCCcccccCC-CCcceEEE
Q 044563 246 FHI--TGLISNQMDALIGQ-SLGKRVFK 270 (290)
Q Consensus 246 YrI--v~~iGDq~sDl~G~-~~g~r~fk 270 (290)
... +.+|||..+|+... ..|-+++-
T Consensus 153 ~~~~~~~~iGDs~~Di~aa~~aG~~~i~ 180 (214)
T PRK13288 153 AKPEEALMVGDNHHDILAGKNAGTKTAG 180 (214)
T ss_pred CCHHHEEEECCCHHHHHHHHHCCCeEEE
Confidence 222 45899999999864 33544443
No 22
>PLN02645 phosphoglycolate phosphatase
Probab=97.88 E-value=3e-05 Score=73.36 Aligned_cols=60 Identities=12% Similarity=0.132 Sum_probs=52.9
Q ss_pred CcEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHh
Q 044563 130 LDVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLIS 209 (290)
Q Consensus 130 ~~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~ 209 (290)
-++++||+||||-+.. .++|++.++++.|+++|.+++|+|||+...+....+-|++
T Consensus 28 ~~~~~~D~DGtl~~~~------------------------~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~ 83 (311)
T PLN02645 28 VETFIFDCDGVIWKGD------------------------KLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFES 83 (311)
T ss_pred CCEEEEeCcCCeEeCC------------------------ccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 4699999999886531 2478999999999999999999999998888888999999
Q ss_pred CCCC
Q 044563 210 AGYR 213 (290)
Q Consensus 210 ~Gy~ 213 (290)
.||.
T Consensus 84 lGi~ 87 (311)
T PLN02645 84 LGLN 87 (311)
T ss_pred CCCC
Confidence 9997
No 23
>PRK10444 UMP phosphatase; Provisional
Probab=97.84 E-value=8.7e-05 Score=68.39 Aligned_cols=59 Identities=17% Similarity=0.305 Sum_probs=52.5
Q ss_pred cEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhC
Q 044563 131 DVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISA 210 (290)
Q Consensus 131 ~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~ 210 (290)
+.++||+||||-+. ..++|++.++++.|+++|.+++|+|||+-..+....+.|.+.
T Consensus 2 ~~v~~DlDGtL~~~------------------------~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~ 57 (248)
T PRK10444 2 KNVICDIDGVLMHD------------------------NVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATA 57 (248)
T ss_pred cEEEEeCCCceEeC------------------------CeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHc
Confidence 47999999988653 145899999999999999999999999998889999999999
Q ss_pred CCC
Q 044563 211 GYR 213 (290)
Q Consensus 211 Gy~ 213 (290)
||+
T Consensus 58 G~~ 60 (248)
T PRK10444 58 GVD 60 (248)
T ss_pred CCC
Confidence 995
No 24
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=97.84 E-value=7.4e-05 Score=63.72 Aligned_cols=92 Identities=12% Similarity=0.055 Sum_probs=56.6
Q ss_pred CcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCC-CcceeecCcccCc-chHHhhHHHHHHHHhcCC
Q 044563 169 HLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGW-SSLIMRLDNEMQM-DSREYLSRRRTILQKEGF 246 (290)
Q Consensus 169 apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~-d~LiLR~~~~~~~-~~~~yKs~~R~~i~~~GY 246 (290)
.+++|++++++++|+++|+++.++|+.... ..-|+..|...+ +..+-..+....+ +.-.|+ ..++..|.
T Consensus 86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~~~-----~~~l~~~~l~~~f~~~~~~~~~~~~kp~p~~~~----~~~~~~~~ 156 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKKNNIKIALASASKNA-----PTVLEKLGLIDYFDAIVDPAEIKKGKPDPEIFL----AAAEGLGV 156 (185)
T ss_pred cccCccHHHHHHHHHHCCCeEEEEeCCccH-----HHHHHhcCcHhhCcEEEehhhcCCCCCChHHHH----HHHHHcCC
Confidence 368999999999999999999999996431 235778886533 4433222211122 222233 23333343
Q ss_pred eE--EEEeCCCcccccCCC-CcceEE
Q 044563 247 HI--TGLISNQMDALIGQS-LGKRVF 269 (290)
Q Consensus 247 rI--v~~iGDq~sDl~G~~-~g~r~f 269 (290)
.. +..|||...|+.+.. .|-+++
T Consensus 157 ~~~~~v~vgD~~~di~aA~~aG~~~i 182 (185)
T TIGR01990 157 SPSECIGIEDAQAGIEAIKAAGMFAV 182 (185)
T ss_pred CHHHeEEEecCHHHHHHHHHcCCEEE
Confidence 22 557999999998753 355544
No 25
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=97.82 E-value=4.2e-05 Score=63.75 Aligned_cols=86 Identities=10% Similarity=0.093 Sum_probs=52.4
Q ss_pred hcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCC-CCcceeecCcccCcc-hHHhhHHHHHHHHhc
Q 044563 167 AKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRG-WSSLIMRLDNEMQMD-SREYLSRRRTILQKE 244 (290)
Q Consensus 167 ~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~-~d~LiLR~~~~~~~~-~~~yKs~~R~~i~~~ 244 (290)
...+..||+.++++.|+++|+++.++|+++........+.+ +.. .+.++...+.. +++ .-.|.. .+++.
T Consensus 61 ~~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~----l~~~f~~i~~~~~~~-~Kp~~~~~~~----~~~~~ 131 (154)
T TIGR01549 61 AEEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH----LGDYFDLILGSDEFG-AKPEPEIFLA----ALESL 131 (154)
T ss_pred hhheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH----HHhcCcEEEecCCCC-CCcCHHHHHH----HHHHc
Confidence 34566799999999999999999999999865544444443 111 23444443222 232 222332 22222
Q ss_pred CCe-EEEEeCCCcccccC
Q 044563 245 GFH-ITGLISNQMDALIG 261 (290)
Q Consensus 245 GYr-Iv~~iGDq~sDl~G 261 (290)
|.. =+..|||...|+..
T Consensus 132 ~~~~~~l~iGDs~~Di~a 149 (154)
T TIGR01549 132 GLPPEVLHVGDNLNDIEG 149 (154)
T ss_pred CCCCCEEEEeCCHHHHHH
Confidence 332 25689999999864
No 26
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=97.82 E-value=3.9e-05 Score=71.25 Aligned_cols=59 Identities=12% Similarity=0.144 Sum_probs=51.8
Q ss_pred cEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhC
Q 044563 131 DVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISA 210 (290)
Q Consensus 131 ~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~ 210 (290)
++|+|||||||-+. ..++|++.++++.|+++|++++++|||+...+....+.|++.
T Consensus 3 ~~~~~D~DGtl~~~------------------------~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~ 58 (279)
T TIGR01452 3 QGFIFDCDGVLWLG------------------------ERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARL 58 (279)
T ss_pred cEEEEeCCCceEcC------------------------CeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHc
Confidence 58999999988553 135788999999999999999999999988888888999999
Q ss_pred CCC
Q 044563 211 GYR 213 (290)
Q Consensus 211 Gy~ 213 (290)
|+.
T Consensus 59 G~~ 61 (279)
T TIGR01452 59 GFN 61 (279)
T ss_pred CCC
Confidence 986
No 27
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=97.79 E-value=0.00015 Score=65.16 Aligned_cols=97 Identities=10% Similarity=0.105 Sum_probs=61.5
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCc-ccCcchH-HhhHHHHHHHHhcC
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDN-EMQMDSR-EYLSRRRTILQKEG 245 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~-~~~~~~~-~yKs~~R~~i~~~G 245 (290)
..++.|++.+++++|+++|+++.++||.+. ..+...|+..|+..+-..+.-.+. ...|+.. .|. ..+..-|
T Consensus 93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~---~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~----~~~~~l~ 165 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPE---YLARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLL----VAAERIG 165 (229)
T ss_pred cCeeCCCHHHHHHHHHHCCCeEEEECCCCH---HHHHHHHHHcCchhcccEEEecCcCCCCCCCHHHHH----HHHHHhC
Confidence 367899999999999999999999999764 455667888887654333333222 1223222 222 2222223
Q ss_pred Ce--EEEEeCCCcccccCC-CCcceEEEc
Q 044563 246 FH--ITGLISNQMDALIGQ-SLGKRVFKL 271 (290)
Q Consensus 246 Yr--Iv~~iGDq~sDl~G~-~~g~r~fkL 271 (290)
-. =+..|||..+|+... ..|-+++-.
T Consensus 166 ~~p~~~l~IGDs~~Di~aA~~aG~~~i~v 194 (229)
T PRK13226 166 VAPTDCVYVGDDERDILAARAAGMPSVAA 194 (229)
T ss_pred CChhhEEEeCCCHHHHHHHHHCCCcEEEE
Confidence 22 267999999999754 345555544
No 28
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=97.78 E-value=0.00021 Score=62.81 Aligned_cols=108 Identities=17% Similarity=0.276 Sum_probs=75.4
Q ss_pred CCCcEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHH
Q 044563 128 NGLDVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELL 207 (290)
Q Consensus 128 ~g~~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL 207 (290)
.|-.++|+|+|+||-- |+ ...+-|.+.+-+..++.+|.+|+++||-+|. --..++
T Consensus 26 ~Gikgvi~DlDNTLv~----------------wd------~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~---RV~~~~ 80 (175)
T COG2179 26 HGIKGVILDLDNTLVP----------------WD------NPDATPELRAWLAELKEAGIKVVVVSNNKES---RVARAA 80 (175)
T ss_pred cCCcEEEEeccCceec----------------cc------CCCCCHHHHHHHHHHHhcCCEEEEEeCCCHH---HHHhhh
Confidence 5677999999996643 11 1234577888889999999999999995442 334577
Q ss_pred HhCCCCCCCcceeecCcccCcchHHhhHHHHHHHHhcCCeE--EEEeCCCc-ccccCCC-CcceEEEc
Q 044563 208 ISAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGFHI--TGLISNQM-DALIGQS-LGKRVFKL 271 (290)
Q Consensus 208 ~~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GYrI--v~~iGDq~-sDl~G~~-~g~r~fkL 271 (290)
.+.|++ -+.|.... +-...|+.|.+-+++. +.+||||+ .|..|++ .|-|++..
T Consensus 81 ~~l~v~----fi~~A~KP-------~~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~~tIlV 137 (175)
T COG2179 81 EKLGVP----FIYRAKKP-------FGRAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGMRTILV 137 (175)
T ss_pred hhcCCc----eeecccCc-------cHHHHHHHHHHcCCChhHEEEEcchhhhhhhcccccCcEEEEE
Confidence 788886 34443332 2236777888776654 68999997 5888875 57777653
No 29
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=97.75 E-value=0.00023 Score=63.47 Aligned_cols=143 Identities=15% Similarity=0.175 Sum_probs=86.4
Q ss_pred CCcEEEEeccc-ccccChhhhh--hcc--CC----CCccchHHHHHhhc--CcCcHHHHHHHHHHHhCCCeEEEecCCCc
Q 044563 129 GLDVVLMDIDD-IFASSSKYSN--LLI--DR----VNVRGYIECIEEAK--HLKHMFTLKLFMKLQVRGWPVILLSRKHE 197 (290)
Q Consensus 129 g~~AvVfDIDe-tLsn~~y~~~--~~~--G~----~~~~~w~~Wv~~~~--apaip~~l~l~~~l~~~Gv~V~~iSgR~e 197 (290)
.|-+|-||||+ +|=++|++.. ..| |. .++.=|++-.+... .-|-.-+..|.+.-+++|-+|+|+|||+.
T Consensus 62 ~Pi~VsFDIDDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RGD~i~FvTGRt~ 141 (237)
T COG3700 62 PPIAVSFDIDDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIYFVTGRTP 141 (237)
T ss_pred CCeeEeeccCCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 34499999999 6777777532 111 11 13333444222222 33445678899999999999999999998
Q ss_pred cchHHHHHHHHhC-CCCCCCcceeecCcccCcchHHhhHHHHHHHHhcCCeEEEEeCCCcccccC----CCCcceEEEcc
Q 044563 198 GQRNATTELLISA-GYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGFHITGLISNQMDALIG----QSLGKRVFKLP 272 (290)
Q Consensus 198 ~~r~~T~~NL~~~-Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GYrIv~~iGDq~sDl~G----~~~g~r~fkLP 272 (290)
..-+-+.+-|.+. ....-.-++.-++ ..+...-.| -..|++++-+| .-||.-.|+.. +-.|-|...-|
T Consensus 142 gk~d~vsk~Lak~F~i~~m~pv~f~Gd--k~k~~qy~K---t~~i~~~~~~I--hYGDSD~Di~AAkeaG~RgIRilRAa 214 (237)
T COG3700 142 GKTDTVSKTLAKNFHITNMNPVIFAGD--KPKPGQYTK---TQWIQDKNIRI--HYGDSDNDITAAKEAGARGIRILRAA 214 (237)
T ss_pred CcccccchhHHhhcccCCCcceeeccC--CCCcccccc---cHHHHhcCceE--EecCCchhhhHHHhcCccceeEEecC
Confidence 7666666666543 1211122333322 222212123 34677666665 68999999974 23477778889
Q ss_pred CCcccc
Q 044563 273 NPLYYS 278 (290)
Q Consensus 273 NPmY~~ 278 (290)
|.+|-+
T Consensus 215 NSTy~P 220 (237)
T COG3700 215 NSTYKP 220 (237)
T ss_pred CccCCc
Confidence 988864
No 30
>PLN02954 phosphoserine phosphatase
Probab=97.74 E-value=0.00033 Score=61.99 Aligned_cols=94 Identities=17% Similarity=0.174 Sum_probs=56.5
Q ss_pred CcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCC---CC-cceeecC-------cccCcchHHhhHHH
Q 044563 169 HLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRG---WS-SLIMRLD-------NEMQMDSREYLSRR 237 (290)
Q Consensus 169 apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~---~d-~LiLR~~-------~~~~~~~~~yKs~~ 237 (290)
....|++.++++.++++|+++.++|+.. +..+..-|+..|++. +. .+....+ .........-|...
T Consensus 83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~---~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~ 159 (224)
T PLN02954 83 PRLSPGIPELVKKLRARGTDVYLVSGGF---RQMIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEA 159 (224)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEECCCc---HHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHH
Confidence 4567999999999999999999999976 445666677888752 11 1111110 00000001124332
Q ss_pred -HHHHHhcCCeEEEEeCCCcccccCCCCc
Q 044563 238 -RTILQKEGFHITGLISNQMDALIGQSLG 265 (290)
Q Consensus 238 -R~~i~~~GYrIv~~iGDq~sDl~G~~~g 265 (290)
++.++..|+.=+..|||..+|+.....|
T Consensus 160 i~~~~~~~~~~~~i~iGDs~~Di~aa~~~ 188 (224)
T PLN02954 160 VQHIKKKHGYKTMVMIGDGATDLEARKPG 188 (224)
T ss_pred HHHHHHHcCCCceEEEeCCHHHHHhhhcC
Confidence 2233334544456789999999886543
No 31
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=97.73 E-value=0.00019 Score=64.32 Aligned_cols=88 Identities=16% Similarity=0.215 Sum_probs=58.6
Q ss_pred CcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCc-ccCcchHHhhHHHHHHHHhcCCe
Q 044563 169 HLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDN-EMQMDSREYLSRRRTILQKEGFH 247 (290)
Q Consensus 169 apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~-~~~~~~~~yKs~~R~~i~~~GYr 247 (290)
..+.|++.+++..|+++|++..++|++++ ..+..-|+..|+..+=..+.-.++ ...|.... .....+++-|..
T Consensus 88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~~---~~~~~~l~~~gl~~~F~~i~g~~~~~~~KP~P~---~l~~~~~~~~~~ 161 (220)
T COG0546 88 SRLFPGVKELLAALKSAGYKLGIVTNKPE---RELDILLKALGLADYFDVIVGGDDVPPPKPDPE---PLLLLLEKLGLD 161 (220)
T ss_pred CccCCCHHHHHHHHHhCCCeEEEEeCCcH---HHHHHHHHHhCCccccceEEcCCCCCCCCcCHH---HHHHHHHHhCCC
Confidence 46899999999999999999999999875 455566666887655333333122 12222111 222334445555
Q ss_pred --EEEEeCCCcccccCC
Q 044563 248 --ITGLISNQMDALIGQ 262 (290)
Q Consensus 248 --Iv~~iGDq~sDl~G~ 262 (290)
=+.+|||...|+...
T Consensus 162 ~~~~l~VGDs~~Di~aA 178 (220)
T COG0546 162 PEEALMVGDSLNDILAA 178 (220)
T ss_pred hhheEEECCCHHHHHHH
Confidence 467999999999754
No 32
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=97.73 E-value=0.00017 Score=62.16 Aligned_cols=105 Identities=10% Similarity=-0.050 Sum_probs=59.7
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCC-CcceeecCccc-Ccc-----hHHhhHHHHHH
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGW-SSLIMRLDNEM-QMD-----SREYLSRRRTI 240 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~-d~LiLR~~~~~-~~~-----~~~yKs~~R~~ 240 (290)
..++.|++.++++.++++|++++++|+.. +......|+..|+..+ ...+.-..... .++ ...-|.+.-++
T Consensus 78 ~~~~~~g~~e~l~~l~~~g~~~~IvS~~~---~~~~~~~l~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~ 154 (201)
T TIGR01491 78 EISLRDYAEELVRWLKEKGLKTAIVSGGI---MCLAKKVAEKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVER 154 (201)
T ss_pred hCCCCccHHHHHHHHHHCCCEEEEEeCCc---HHHHHHHHHHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHHHH
Confidence 46788999999999999999999999986 4455566777786532 11121111000 000 00113222222
Q ss_pred HH-hcC--CeEEEEeCCCcccccCCC-CcceEEEccCCc
Q 044563 241 LQ-KEG--FHITGLISNQMDALIGQS-LGKRVFKLPNPL 275 (290)
Q Consensus 241 i~-~~G--YrIv~~iGDq~sDl~G~~-~g~r~fkLPNPm 275 (290)
+. +.| ..=+.++||..+|+.... .|.....=|+|.
T Consensus 155 ~~~~~~~~~~~~i~iGDs~~D~~~a~~ag~~~a~~~~~~ 193 (201)
T TIGR01491 155 LKRELNPSLTETVAVGDSKNDLPMFEVADISISLGDEGH 193 (201)
T ss_pred HHHHhCCCHHHEEEEcCCHhHHHHHHhcCCeEEECCCcc
Confidence 22 222 122678899999998543 344333336653
No 33
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=97.68 E-value=0.00012 Score=71.09 Aligned_cols=134 Identities=10% Similarity=0.164 Sum_probs=83.8
Q ss_pred CcEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCC--------cc---
Q 044563 130 LDVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKH--------EG--- 198 (290)
Q Consensus 130 ~~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~--------e~--- 198 (290)
+++++||.||||-..+. .+ | +..+ ..+..+.|++.+++++|+++|++++++||.+ +.
T Consensus 2 ~k~l~lDrDgtl~~~~~--~~----y----~~~~--~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~ 69 (354)
T PRK05446 2 QKILFIDRDGTLIEEPP--TD----F----QVDS--LDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFD 69 (354)
T ss_pred CcEEEEeCCCCccCCCC--cc----c----cccC--cccceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHh
Confidence 56999999997766531 10 1 0111 1135789999999999999999999999942 11
Q ss_pred -chHHHHHHHHhCCCCCCCcceeecC---c--ccCcchHHhhHHHHHH-HHhcCC--eEEEEeCCCcccccCC-CCcceE
Q 044563 199 -QRNATTELLISAGYRGWSSLIMRLD---N--EMQMDSREYLSRRRTI-LQKEGF--HITGLISNQMDALIGQ-SLGKRV 268 (290)
Q Consensus 199 -~r~~T~~NL~~~Gy~~~d~LiLR~~---~--~~~~~~~~yKs~~R~~-i~~~GY--rIv~~iGDq~sDl~G~-~~g~r~ 268 (290)
.+..+.+.|...|.. .+..++... + ..+++ |.+.-.. +...+. .=..+|||..+|+.+. ..|-++
T Consensus 70 ~~~~~i~~iL~~~gl~-fd~i~i~~~~~sd~~~~rKP----~p~~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~aGi~~ 144 (354)
T PRK05446 70 PPHNLMMQIFESQGIK-FDEVLICPHFPEDNCSCRKP----KTGLVEEYLAEGAIDLANSYVIGDRETDVQLAENMGIKG 144 (354)
T ss_pred hHHHHHHHHHHHcCCc-eeeEEEeCCcCcccCCCCCC----CHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCeE
Confidence 244577788888874 455555421 1 12222 1112212 222222 3366889999999875 456654
Q ss_pred EEccCCccccccc
Q 044563 269 FKLPNPLYYSFDH 281 (290)
Q Consensus 269 fkLPNPmY~~we~ 281 (290)
+ +.||-...|+.
T Consensus 145 I-~v~~~~~~~~~ 156 (354)
T PRK05446 145 I-RYARETLNWDA 156 (354)
T ss_pred E-EEECCCCCHHH
Confidence 4 66998899984
No 34
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=97.67 E-value=0.00018 Score=67.20 Aligned_cols=97 Identities=13% Similarity=0.147 Sum_probs=63.2
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCcccCcchHHhhHHHHHHHHhcCC-
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGF- 246 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GY- 246 (290)
..++.|++.++++.|+++|+++.++|+.. +..+...|+..|+..+=..+.-.+....+ +...+..++..|.
T Consensus 140 ~~~l~pg~~e~L~~L~~~gi~laIvSn~~---~~~~~~~L~~~gl~~~F~~vi~~~~~~~k-----~~~~~~~l~~~~~~ 211 (273)
T PRK13225 140 ALQLFPGVADLLAQLRSRSLCLGILSSNS---RQNIEAFLQRQGLRSLFSVVQAGTPILSK-----RRALSQLVAREGWQ 211 (273)
T ss_pred cCCcCCCHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHHcCChhheEEEEecCCCCCC-----HHHHHHHHHHhCcC
Confidence 34678999999999999999999999975 56777788889976542333222211111 2222333333332
Q ss_pred -eEEEEeCCCcccccCC-CCcceEEEcc
Q 044563 247 -HITGLISNQMDALIGQ-SLGKRVFKLP 272 (290)
Q Consensus 247 -rIv~~iGDq~sDl~G~-~~g~r~fkLP 272 (290)
.=+.+|||...|+... ..|-+++-++
T Consensus 212 p~~~l~IGDs~~Di~aA~~AG~~~I~v~ 239 (273)
T PRK13225 212 PAAVMYVGDETRDVEAARQVGLIAVAVT 239 (273)
T ss_pred hhHEEEECCCHHHHHHHHHCCCeEEEEe
Confidence 2367999999999865 3466666554
No 35
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=97.62 E-value=0.00037 Score=63.21 Aligned_cols=67 Identities=19% Similarity=0.251 Sum_probs=50.6
Q ss_pred CCcEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHH
Q 044563 129 GLDVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLI 208 (290)
Q Consensus 129 g~~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~ 208 (290)
..++|+||+||||.+. ..++|++.+++++|+++|+++.++||.+. .+..-.+-|+
T Consensus 7 ~~~~~~~D~dG~l~~~------------------------~~~~pga~e~L~~L~~~G~~~~ivTN~~~-~~~~~~~~L~ 61 (242)
T TIGR01459 7 DYDVFLLDLWGVIIDG------------------------NHTYPGAVQNLNKIIAQGKPVYFVSNSPR-NIFSLHKTLK 61 (242)
T ss_pred cCCEEEEecccccccC------------------------CccCccHHHHHHHHHHCCCEEEEEeCCCC-ChHHHHHHHH
Confidence 3569999999977653 13589999999999999999999999653 2333347899
Q ss_pred hCCCCC-CCccee
Q 044563 209 SAGYRG-WSSLIM 220 (290)
Q Consensus 209 ~~Gy~~-~d~LiL 220 (290)
+.|++. +-..++
T Consensus 62 ~~gl~~~~~~~Ii 74 (242)
T TIGR01459 62 SLGINADLPEMII 74 (242)
T ss_pred HCCCCccccceEE
Confidence 999975 433443
No 36
>PRK09449 dUMP phosphatase; Provisional
Probab=97.62 E-value=0.0004 Score=61.45 Aligned_cols=97 Identities=11% Similarity=0.108 Sum_probs=64.0
Q ss_pred CcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCC-CCcceeecCcccCcchHHhhHHHHHHHHhcCC-
Q 044563 169 HLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRG-WSSLIMRLDNEMQMDSREYLSRRRTILQKEGF- 246 (290)
Q Consensus 169 apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~-~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GY- 246 (290)
.++.|++.++++.|+ .|+++.++||-. +..+...|...|+.. .+.++...+....|+.. ..-...+++.|-
T Consensus 94 ~~~~~g~~~~L~~L~-~~~~~~i~Tn~~---~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p---~~~~~~~~~~~~~ 166 (224)
T PRK09449 94 CTPLPGAVELLNALR-GKVKMGIITNGF---TELQQVRLERTGLRDYFDLLVISEQVGVAKPDV---AIFDYALEQMGNP 166 (224)
T ss_pred CccCccHHHHHHHHH-hCCeEEEEeCCc---HHHHHHHHHhCChHHHcCEEEEECccCCCCCCH---HHHHHHHHHcCCC
Confidence 568999999999999 689999999954 456667788888754 35555443222233222 122333444442
Q ss_pred --eEEEEeCCCc-ccccCC-CCcceEEEcc
Q 044563 247 --HITGLISNQM-DALIGQ-SLGKRVFKLP 272 (290)
Q Consensus 247 --rIv~~iGDq~-sDl~G~-~~g~r~fkLP 272 (290)
.-+..|||.. +|+.+. ..|-+++.++
T Consensus 167 ~~~~~~~vgD~~~~Di~~A~~aG~~~i~~~ 196 (224)
T PRK09449 167 DRSRVLMVGDNLHSDILGGINAGIDTCWLN 196 (224)
T ss_pred CcccEEEEcCCcHHHHHHHHHCCCcEEEEC
Confidence 3477999998 699875 4566666664
No 37
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=97.61 E-value=0.00025 Score=61.32 Aligned_cols=123 Identities=13% Similarity=0.196 Sum_probs=73.6
Q ss_pred cEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCcc------------
Q 044563 131 DVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEG------------ 198 (290)
Q Consensus 131 ~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~------------ 198 (290)
+++.||.||||-.... +.|.. .+.+ .-++.|++.+++++|+++|++++++||-+..
T Consensus 2 ~~~~~d~dg~l~~~~~------~~~~~-~~~~-----~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~ 69 (161)
T TIGR01261 2 KILFIDRDGTLIEEPP------SDFQV-DALE-----KLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDG 69 (161)
T ss_pred CEEEEeCCCCccccCC------Ccccc-CCHH-----HeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHH
Confidence 5899999997755421 01111 1111 2367899999999999999999999996421
Q ss_pred chHHHHHHHHhCCCCCCCcceee-----cCcccCcchHHhhHHHHHHH-HhcCCeE--EEEeCCCcccccCC-CCcceEE
Q 044563 199 QRNATTELLISAGYRGWSSLIMR-----LDNEMQMDSREYLSRRRTIL-QKEGFHI--TGLISNQMDALIGQ-SLGKRVF 269 (290)
Q Consensus 199 ~r~~T~~NL~~~Gy~~~d~LiLR-----~~~~~~~~~~~yKs~~R~~i-~~~GYrI--v~~iGDq~sDl~G~-~~g~r~f 269 (290)
.+....+-|.+.|.. .+..+.- .....+++. .+....+ +..|-.. ...|||.+.|..+. ..|-.++
T Consensus 70 ~~~~~~~~l~~~gl~-fd~ii~~~~~~~~~~~~~KP~----~~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~i 144 (161)
T TIGR01261 70 PHNLMLQIFRSQGII-FDDVLICPHFPDDNCDCRKPK----IKLLEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRGI 144 (161)
T ss_pred HHHHHHHHHHHCCCc-eeEEEECCCCCCCCCCCCCCC----HHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeEE
Confidence 233455668888986 6555543 111122221 1222222 2233222 67999999999875 3455444
Q ss_pred E
Q 044563 270 K 270 (290)
Q Consensus 270 k 270 (290)
-
T Consensus 145 ~ 145 (161)
T TIGR01261 145 Q 145 (161)
T ss_pred E
Confidence 3
No 38
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=97.61 E-value=0.00045 Score=64.02 Aligned_cols=98 Identities=10% Similarity=0.085 Sum_probs=64.0
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCC-CcceeecCcccCcc-hHHhhHHHHHHHHhcC
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGW-SSLIMRLDNEMQMD-SREYLSRRRTILQKEG 245 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~-d~LiLR~~~~~~~~-~~~yKs~~R~~i~~~G 245 (290)
..++.|++.++++.|+++|+++.++||.+. ..+..-|...|+..+ +..+-..+...+|+ .-.|.. .+++-|
T Consensus 107 ~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~---~~~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~----a~~~l~ 179 (260)
T PLN03243 107 LYRLRPGSREFVQALKKHEIPIAVASTRPR---RYLERAIEAVGMEGFFSVVLAAEDVYRGKPDPEMFMY----AAERLG 179 (260)
T ss_pred CcccCCCHHHHHHHHHHCCCEEEEEeCcCH---HHHHHHHHHcCCHhhCcEEEecccCCCCCCCHHHHHH----HHHHhC
Confidence 456799999999999999999999999764 556667788887654 44443322222232 223432 233334
Q ss_pred CeE--EEEeCCCcccccCC-CCcceEEEcc
Q 044563 246 FHI--TGLISNQMDALIGQ-SLGKRVFKLP 272 (290)
Q Consensus 246 YrI--v~~iGDq~sDl~G~-~~g~r~fkLP 272 (290)
... ..+|||...|+... ..|-+++-+.
T Consensus 180 ~~p~~~l~IgDs~~Di~aA~~aG~~~i~v~ 209 (260)
T PLN03243 180 FIPERCIVFGNSNSSVEAAHDGCMKCVAVA 209 (260)
T ss_pred CChHHeEEEcCCHHHHHHHHHcCCEEEEEe
Confidence 333 56799999999764 3466666654
No 39
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=97.58 E-value=0.00075 Score=57.44 Aligned_cols=93 Identities=8% Similarity=-0.007 Sum_probs=57.3
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCC-Ccce-------------eecCcc---cCcch
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGW-SSLI-------------MRLDNE---MQMDS 230 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~-d~Li-------------LR~~~~---~~~~~ 230 (290)
..+..|++.++++.++++|+++.++|+... ......|+..|+..+ +.++ ..+... .....
T Consensus 70 ~~~l~~g~~~ll~~l~~~g~~~~i~S~~~~---~~~~~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 146 (188)
T TIGR01489 70 SAPIDPGFKEFIAFIKEHGIDFIVISDGND---FFIDPVLEGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPC 146 (188)
T ss_pred hCCCCccHHHHHHHHHHcCCcEEEEeCCcH---HHHHHHHHHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCCC
Confidence 468899999999999999999999999754 334445666676532 2222 000000 00011
Q ss_pred HHhhHHHHHHHHhcCCeEEEEeCCCcccccCCC
Q 044563 231 REYLSRRRTILQKEGFHITGLISNQMDALIGQS 263 (290)
Q Consensus 231 ~~yKs~~R~~i~~~GYrIv~~iGDq~sDl~G~~ 263 (290)
-..|.+.-+++.++-+.=+..+||..+|+....
T Consensus 147 g~~K~~~~~~~~~~~~~~~i~iGD~~~D~~aa~ 179 (188)
T TIGR01489 147 GCCKGKVIHKLSEPKYQHIIYIGDGVTDVCPAK 179 (188)
T ss_pred CCCHHHHHHHHHhhcCceEEEECCCcchhchHh
Confidence 123655555555441444668899999998653
No 40
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=97.58 E-value=0.00023 Score=61.68 Aligned_cols=72 Identities=11% Similarity=0.168 Sum_probs=50.4
Q ss_pred cEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccch---------H
Q 044563 131 DVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQR---------N 201 (290)
Q Consensus 131 ~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r---------~ 201 (290)
..++||+||||-+..... .+ ..+++.|. .+.|++.++++.|+++|+++.++||.++..| .
T Consensus 14 k~~~~D~Dgtl~~~~~~~--~~-~~~~~~~~--------~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~ 82 (166)
T TIGR01664 14 KVAAFDLDGTLITTRSGK--VF-PTSASDWR--------FLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKN 82 (166)
T ss_pred cEEEEeCCCceEecCCCC--cc-cCChHHeE--------EecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHH
Confidence 589999999776542100 00 12455451 3568999999999999999999999776422 2
Q ss_pred HHHHHHHhCCCC
Q 044563 202 ATTELLISAGYR 213 (290)
Q Consensus 202 ~T~~NL~~~Gy~ 213 (290)
.+.+.|+..|.+
T Consensus 83 ~i~~~l~~~gl~ 94 (166)
T TIGR01664 83 KIEAFLEKLKVP 94 (166)
T ss_pred HHHHHHHHcCCC
Confidence 456778899985
No 41
>PRK06769 hypothetical protein; Validated
Probab=97.57 E-value=0.00012 Score=63.61 Aligned_cols=122 Identities=11% Similarity=0.159 Sum_probs=71.8
Q ss_pred CcEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccc-----hHHHH
Q 044563 130 LDVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQ-----RNATT 204 (290)
Q Consensus 130 ~~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~-----r~~T~ 204 (290)
-.+++||.||||.-.++ |.......+.|++.+++++|+++|++++++||-++.. ...+.
T Consensus 4 ~~~~~~d~d~~~~~~~~----------------~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~ 67 (173)
T PRK06769 4 IQAIFIDRDGTIGGDTT----------------IHYPGSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFV 67 (173)
T ss_pred CcEEEEeCCCcccCCCC----------------CCCHHHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHH
Confidence 35999999999842111 1112234678999999999999999999999976421 12344
Q ss_pred HHHHhCCCCCC-CcceeecCc-ccCcc-hHHhhHHHHHHHHhcCCeE--EEEeCCCcccccCCC-CcceEEEc
Q 044563 205 ELLISAGYRGW-SSLIMRLDN-EMQMD-SREYLSRRRTILQKEGFHI--TGLISNQMDALIGQS-LGKRVFKL 271 (290)
Q Consensus 205 ~NL~~~Gy~~~-d~LiLR~~~-~~~~~-~~~yKs~~R~~i~~~GYrI--v~~iGDq~sDl~G~~-~g~r~fkL 271 (290)
+-|+..|+..+ .......++ ..+|+ .-.|+... ++.|... ..+|||.+.|+.+.. .|-+++-+
T Consensus 68 ~~l~~~g~~~~~~~~~~~~~~~~~~KP~p~~~~~~~----~~l~~~p~~~i~IGD~~~Di~aA~~aGi~~i~v 136 (173)
T PRK06769 68 QELKGFGFDDIYLCPHKHGDGCECRKPSTGMLLQAA----EKHGLDLTQCAVIGDRWTDIVAAAKVNATTILV 136 (173)
T ss_pred HHHHhCCcCEEEECcCCCCCCCCCCCCCHHHHHHHH----HHcCCCHHHeEEEcCCHHHHHHHHHCCCeEEEE
Confidence 55888887532 111111111 11222 22344332 2223322 679999999998653 35544443
No 42
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=97.57 E-value=0.00057 Score=60.09 Aligned_cols=100 Identities=12% Similarity=0.095 Sum_probs=60.3
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCcc-cCcc-hHHhhHHHHHHHHhcC
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDNE-MQMD-SREYLSRRRTILQKEG 245 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~~-~~~~-~~~yKs~~R~~i~~~G 245 (290)
...+.|++.++++.+++.|++++++||..+. .....|+..|+..+-..++-.+.. ..+. ...|+.. .+++....
T Consensus 91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~---~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~-~~~~~~~~ 166 (226)
T PRK13222 91 GSRLYPGVKETLAALKAAGYPLAVVTNKPTP---FVAPLLEALGIADYFSVVIGGDSLPNKKPDPAPLLLA-CEKLGLDP 166 (226)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHH---HHHHHHHHcCCccCccEEEcCCCCCCCCcChHHHHHH-HHHcCCCh
Confidence 4678999999999999999999999998753 334677778876543334432221 1111 1112221 12222222
Q ss_pred CeEEEEeCCCcccccCCC-CcceEEEcc
Q 044563 246 FHITGLISNQMDALIGQS-LGKRVFKLP 272 (290)
Q Consensus 246 YrIv~~iGDq~sDl~G~~-~g~r~fkLP 272 (290)
.+ +..|||..+|+.+.. .|-.++-++
T Consensus 167 ~~-~i~igD~~~Di~~a~~~g~~~i~v~ 193 (226)
T PRK13222 167 EE-MLFVGDSRNDIQAARAAGCPSVGVT 193 (226)
T ss_pred hh-eEEECCCHHHHHHHHHCCCcEEEEC
Confidence 23 457999999998642 344444444
No 43
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=97.56 E-value=0.00029 Score=60.96 Aligned_cols=122 Identities=12% Similarity=0.193 Sum_probs=71.9
Q ss_pred cEEEEecccccccCh-hhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccc----------
Q 044563 131 DVVLMDIDDIFASSS-KYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQ---------- 199 (290)
Q Consensus 131 ~AvVfDIDetLsn~~-y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~---------- 199 (290)
++++||.||||-..+ .|. +.++. ..++|++.+++++|+++|+++.++||.+...
T Consensus 4 ~~~~~d~~~t~~~~~~~~~---------~~~~~------~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~ 68 (181)
T PRK08942 4 KAIFLDRDGVINVDSDGYV---------KSPDE------WIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLN 68 (181)
T ss_pred cEEEEECCCCcccCCcccc---------CCHHH------eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHH
Confidence 589999999774443 111 11222 3578999999999999999999999986421
Q ss_pred --hHHHHHHHHhCCCCCCCcceeecC---c--ccCc-chHHhhHHHHHHHHhcCCe--EEEEeCCCcccccCC-CCcceE
Q 044563 200 --RNATTELLISAGYRGWSSLIMRLD---N--EMQM-DSREYLSRRRTILQKEGFH--ITGLISNQMDALIGQ-SLGKRV 268 (290)
Q Consensus 200 --r~~T~~NL~~~Gy~~~d~LiLR~~---~--~~~~-~~~~yKs~~R~~i~~~GYr--Iv~~iGDq~sDl~G~-~~g~r~ 268 (290)
++.....|++.|+. .+..+.... + ..+| +...|. ..++..|.. =+..|||...|+.+. ..|-++
T Consensus 69 ~~~~~~~~~l~~~g~~-f~~i~~~~~~~~~~~~~~KP~p~~~~----~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~~~ 143 (181)
T PRK08942 69 ALHEKMDWSLADRGGR-LDGIYYCPHHPEDGCDCRKPKPGMLL----SIAERLNIDLAGSPMVGDSLRDLQAAAAAGVTP 143 (181)
T ss_pred HHHHHHHHHHHHcCCc-cceEEECCCCCCCCCcCCCCCHHHHH----HHHHHcCCChhhEEEEeCCHHHHHHHHHCCCeE
Confidence 12334456677863 445443321 0 1122 222232 223333322 245699999999765 345555
Q ss_pred EEcc
Q 044563 269 FKLP 272 (290)
Q Consensus 269 fkLP 272 (290)
+-++
T Consensus 144 i~v~ 147 (181)
T PRK08942 144 VLVR 147 (181)
T ss_pred EEEc
Confidence 5444
No 44
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=97.56 E-value=0.00026 Score=61.22 Aligned_cols=118 Identities=7% Similarity=0.074 Sum_probs=68.8
Q ss_pred cEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccc-----------
Q 044563 131 DVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQ----------- 199 (290)
Q Consensus 131 ~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~----------- 199 (290)
+++.||.||||-....|. ..+++ ..+.|++.+++++|+++|++++++||-++..
T Consensus 2 ~~~~~D~Dgtl~~~~~~~---------~~~~~------~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~ 66 (176)
T TIGR00213 2 KAIFLDRDGTINIDHGYV---------HEIDN------FEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQ 66 (176)
T ss_pred CEEEEeCCCCEeCCCCCC---------CCHHH------eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHH
Confidence 589999999776422111 11322 3578999999999999999999999977421
Q ss_pred -hHHHHHHHHhCCCCCCCcceeec-----------CcccCc-chHHhhHHHHHHHHhcCCeE--EEEeCCCcccccCC-C
Q 044563 200 -RNATTELLISAGYRGWSSLIMRL-----------DNEMQM-DSREYLSRRRTILQKEGFHI--TGLISNQMDALIGQ-S 263 (290)
Q Consensus 200 -r~~T~~NL~~~Gy~~~d~LiLR~-----------~~~~~~-~~~~yKs~~R~~i~~~GYrI--v~~iGDq~sDl~G~-~ 263 (290)
+......|...|+. .+.++.-. ....+| +.-.|+.. +++.|-.. ..+|||.+.|+.+. .
T Consensus 67 ~~~~~~~~l~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~KP~p~~~~~a----~~~~~~~~~~~v~VGDs~~Di~aA~~ 141 (176)
T TIGR00213 67 LTEWMDWSLAERDVD-LDGIYYCPHHPEGVEEFRQVCDCRKPKPGMLLQA----RKELHIDMAQSYMVGDKLEDMQAGVA 141 (176)
T ss_pred HHHHHHHHHHHcCCC-ccEEEECCCCCcccccccCCCCCCCCCHHHHHHH----HHHcCcChhhEEEEcCCHHHHHHHHH
Confidence 12333456666664 44444321 111122 22233332 22223211 34699999999765 3
Q ss_pred CcceE
Q 044563 264 LGKRV 268 (290)
Q Consensus 264 ~g~r~ 268 (290)
.|-++
T Consensus 142 aG~~~ 146 (176)
T TIGR00213 142 AKVKT 146 (176)
T ss_pred CCCcE
Confidence 45555
No 45
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=97.54 E-value=0.00055 Score=60.34 Aligned_cols=44 Identities=14% Similarity=0.073 Sum_probs=35.4
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCC
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRG 214 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~ 214 (290)
..++.|++.++++.++++|++++++||-. +......|+..|+..
T Consensus 83 ~~~~~~g~~~~l~~l~~~g~~~~IvS~~~---~~~~~~~l~~~~i~~ 126 (219)
T TIGR00338 83 NLPLTEGAEELVKTLKEKGYKVAVISGGF---DLFAEHVKDKLGLDA 126 (219)
T ss_pred cCCcCCCHHHHHHHHHHCCCEEEEECCCc---HHHHHHHHHHcCCCc
Confidence 45689999999999999999999999954 444555666778764
No 46
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=97.53 E-value=0.0002 Score=65.65 Aligned_cols=59 Identities=17% Similarity=0.215 Sum_probs=49.6
Q ss_pred cEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhC
Q 044563 131 DVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISA 210 (290)
Q Consensus 131 ~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~ 210 (290)
+.++||+||||-+.. .++|++.+++++|+++|.+++|+||.+...++.-.+-|++.
T Consensus 2 ~~~~~D~DGtl~~~~------------------------~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~ 57 (249)
T TIGR01457 2 KGYLIDLDGTMYKGK------------------------ERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASF 57 (249)
T ss_pred CEEEEeCCCceEcCC------------------------eeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHc
Confidence 479999999887631 24678999999999999999999997766677778889999
Q ss_pred CCC
Q 044563 211 GYR 213 (290)
Q Consensus 211 Gy~ 213 (290)
|++
T Consensus 58 g~~ 60 (249)
T TIGR01457 58 DIP 60 (249)
T ss_pred CCC
Confidence 986
No 47
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=97.50 E-value=0.00091 Score=58.26 Aligned_cols=89 Identities=15% Similarity=0.103 Sum_probs=57.0
Q ss_pred hcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCC--cceeecCcc-cC--cchHHhhHHHHHHH
Q 044563 167 AKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWS--SLIMRLDNE-MQ--MDSREYLSRRRTIL 241 (290)
Q Consensus 167 ~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d--~LiLR~~~~-~~--~~~~~yKs~~R~~i 241 (290)
...++.||+.++++.++++ +++.++|+.. +..+...|...|++.+- .+....++. .+ .....-|....+++
T Consensus 65 ~~~~~~pg~~e~L~~L~~~-~~~~IvS~~~---~~~~~~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~ 140 (205)
T PRK13582 65 ATLDPLPGAVEFLDWLRER-FQVVILSDTF---YEFAGPLMRQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKAL 140 (205)
T ss_pred HhCCCCCCHHHHHHHHHhc-CCEEEEeCCc---HHHHHHHHHHcCCchhhcceEEECCCCeEECccccccchHHHHHHHH
Confidence 4567789999999999999 9999999976 45666788888976431 111111100 00 00112454555566
Q ss_pred HhcCCeEEEEeCCCccccc
Q 044563 242 QKEGFHITGLISNQMDALI 260 (290)
Q Consensus 242 ~~~GYrIv~~iGDq~sDl~ 260 (290)
...+. -+.+|||..+|+.
T Consensus 141 ~~~~~-~~v~iGDs~~D~~ 158 (205)
T PRK13582 141 KSLGY-RVIAAGDSYNDTT 158 (205)
T ss_pred HHhCC-eEEEEeCCHHHHH
Confidence 55554 4568899999974
No 48
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=97.49 E-value=0.00045 Score=61.58 Aligned_cols=90 Identities=8% Similarity=-0.049 Sum_probs=54.2
Q ss_pred hcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcce-----e-------ecCcccCc-----c
Q 044563 167 AKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLI-----M-------RLDNEMQM-----D 229 (290)
Q Consensus 167 ~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~Li-----L-------R~~~~~~~-----~ 229 (290)
...+..||+.++++.++++|++++++|+-.. ......|+.. ++. +.++ + +.+..... .
T Consensus 71 ~~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~---~~i~~il~~~-~~~-~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~ 145 (219)
T PRK09552 71 ETAEIREGFHEFVQFVKENNIPFYVVSGGMD---FFVYPLLQGL-IPK-EQIYCNGSDFSGEYITITWPHPCDEHCQNHC 145 (219)
T ss_pred hCCCcCcCHHHHHHHHHHcCCeEEEECCCcH---HHHHHHHHHh-CCc-CcEEEeEEEecCCeeEEeccCCccccccccC
Confidence 3568899999999999999999999999864 4444555554 432 1111 1 11110000 0
Q ss_pred hHHhhHHHHHHHHhcCCeEEEEeCCCcccccCCC
Q 044563 230 SREYLSRRRTILQKEGFHITGLISNQMDALIGQS 263 (290)
Q Consensus 230 ~~~yKs~~R~~i~~~GYrIv~~iGDq~sDl~G~~ 263 (290)
. .-|...-+++.....+++ .|||..+|+....
T Consensus 146 ~-~~K~~~l~~~~~~~~~~i-~iGDs~~Di~aa~ 177 (219)
T PRK09552 146 G-CCKPSLIRKLSDTNDFHI-VIGDSITDLEAAK 177 (219)
T ss_pred C-CchHHHHHHhccCCCCEE-EEeCCHHHHHHHH
Confidence 0 114444444444455554 7899999997643
No 49
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=97.49 E-value=0.00069 Score=62.90 Aligned_cols=98 Identities=13% Similarity=0.127 Sum_probs=60.4
Q ss_pred CcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCc-ccCcch-HHhhHHHHHHHHhcCC
Q 044563 169 HLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDN-EMQMDS-REYLSRRRTILQKEGF 246 (290)
Q Consensus 169 apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~-~~~~~~-~~yKs~~R~~i~~~GY 246 (290)
.++.|++.++++.|+++|++++++||.++. .....|...|+..+-..+.-.+. ...++. ..|+. .++..|.
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~---~~~~~l~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~----~~~~~g~ 172 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPER---FVAPLLDQMKIGRYFRWIIGGDTLPQKKPDPAALLF----VMKMAGV 172 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHH---HHHHHHHHcCcHhhCeEEEecCCCCCCCCCcHHHHH----HHHHhCC
Confidence 467899999999999999999999997643 44566777787544333333221 112221 12322 2333343
Q ss_pred eE--EEEeCCCcccccCC-CCcceEEEccC
Q 044563 247 HI--TGLISNQMDALIGQ-SLGKRVFKLPN 273 (290)
Q Consensus 247 rI--v~~iGDq~sDl~G~-~~g~r~fkLPN 273 (290)
.. +..|||+.+|+... ..|-+++-+++
T Consensus 173 ~~~~~l~IGD~~~Di~aA~~aGi~~i~v~~ 202 (272)
T PRK13223 173 PPSQSLFVGDSRSDVLAAKAAGVQCVALSY 202 (272)
T ss_pred ChhHEEEECCCHHHHHHHHHCCCeEEEEec
Confidence 22 45899999999764 34555555543
No 50
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=97.46 E-value=0.00054 Score=60.43 Aligned_cols=98 Identities=12% Similarity=0.105 Sum_probs=62.5
Q ss_pred CcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCC--C-CCcceeecCcccCcc-hHHhhHHHHHHHHhc
Q 044563 169 HLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYR--G-WSSLIMRLDNEMQMD-SREYLSRRRTILQKE 244 (290)
Q Consensus 169 apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~--~-~d~LiLR~~~~~~~~-~~~yKs~~R~~i~~~ 244 (290)
.++.||+.++++.|+++|+++.++||..... ....|+..|.. . ++.++-..+....|+ ...| +..+++.
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~---~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~----~~a~~~~ 158 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDT---AERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLI----LRAMELT 158 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHH---HHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHH----HHHHHHc
Confidence 4789999999999999999999999987543 33455666654 3 344443322222222 2223 2334444
Q ss_pred CCe---EEEEeCCCcccccCC-CCcceE-EEccC
Q 044563 245 GFH---ITGLISNQMDALIGQ-SLGKRV-FKLPN 273 (290)
Q Consensus 245 GYr---Iv~~iGDq~sDl~G~-~~g~r~-fkLPN 273 (290)
|.. =+.+|||.+.|+.+. ..|-++ +-++.
T Consensus 159 ~~~~~~~~~~igD~~~Di~aa~~aG~~~~i~~~~ 192 (220)
T TIGR03351 159 GVQDVQSVAVAGDTPNDLEAGINAGAGAVVGVLT 192 (220)
T ss_pred CCCChhHeEEeCCCHHHHHHHHHCCCCeEEEEec
Confidence 432 367999999999865 456666 55544
No 51
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=97.45 E-value=0.00029 Score=66.18 Aligned_cols=103 Identities=17% Similarity=0.156 Sum_probs=71.2
Q ss_pred CCCcEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHH
Q 044563 128 NGLDVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELL 207 (290)
Q Consensus 128 ~g~~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL 207 (290)
+..++++||+||||-+. ..++|++.++++.|+++|.+++||||.+-..+..=.+.|
T Consensus 6 ~~y~~~l~DlDGvl~~G------------------------~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L 61 (269)
T COG0647 6 DKYDGFLFDLDGVLYRG------------------------NEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARL 61 (269)
T ss_pred hhcCEEEEcCcCceEeC------------------------CccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 34679999999987652 257999999999999999999999999999999888889
Q ss_pred HhCCCC--CCCcce---------eecCcccCcchHHhhHHHHHHHHhcCCeEEEEeCC
Q 044563 208 ISAGYR--GWSSLI---------MRLDNEMQMDSREYLSRRRTILQKEGFHITGLISN 254 (290)
Q Consensus 208 ~~~Gy~--~~d~Li---------LR~~~~~~~~~~~yKs~~R~~i~~~GYrIv~~iGD 254 (290)
++.|.. .++.++ |+......+=-+.--+.-+.+++..|+.++....+
T Consensus 62 ~~~~~~~~~~~~i~TS~~at~~~l~~~~~~~kv~viG~~~l~~~l~~~G~~~~~~~~~ 119 (269)
T COG0647 62 SSLGGVDVTPDDIVTSGDATADYLAKQKPGKKVYVIGEEGLKEELEGAGFELVDEEEP 119 (269)
T ss_pred HhhcCCCCCHHHeecHHHHHHHHHHhhCCCCEEEEECCcchHHHHHhCCcEEeccCCC
Confidence 985544 233332 11111000000011124567788888888876666
No 52
>PLN02940 riboflavin kinase
Probab=97.43 E-value=0.00062 Score=66.50 Aligned_cols=101 Identities=18% Similarity=0.216 Sum_probs=61.7
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHH-hCCCCCCCcceeecCc-ccCcc-hHHhhHHHHHHHHhc
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLI-SAGYRGWSSLIMRLDN-EMQMD-SREYLSRRRTILQKE 244 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~-~~Gy~~~d~LiLR~~~-~~~~~-~~~yKs~~R~~i~~~ 244 (290)
...+.||+.++++.|+++|+++.++||.++ ..+...|. ..|+..+-..++-.++ ..+++ ...|....+ ++--.
T Consensus 91 ~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~---~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~-~lgv~ 166 (382)
T PLN02940 91 NIKALPGANRLIKHLKSHGVPMALASNSPR---ANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAK-RLNVE 166 (382)
T ss_pred cCCCCcCHHHHHHHHHHCCCcEEEEeCCcH---HHHHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHH-HcCCC
Confidence 346889999999999999999999999863 34455665 5676544233332222 12222 112222211 12112
Q ss_pred CCeEEEEeCCCcccccCC-CCcceEEEccC
Q 044563 245 GFHITGLISNQMDALIGQ-SLGKRVFKLPN 273 (290)
Q Consensus 245 GYrIv~~iGDq~sDl~G~-~~g~r~fkLPN 273 (290)
.-+ +..|||...|+.+. ..|-+++-++.
T Consensus 167 p~~-~l~VGDs~~Di~aA~~aGi~~I~v~~ 195 (382)
T PLN02940 167 PSN-CLVIEDSLPGVMAGKAAGMEVIAVPS 195 (382)
T ss_pred hhH-EEEEeCCHHHHHHHHHcCCEEEEECC
Confidence 223 45689999999765 45777777765
No 53
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=97.30 E-value=0.0015 Score=64.22 Aligned_cols=98 Identities=14% Similarity=0.110 Sum_probs=61.5
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCc-ccCcch-HHhhHHHHHHHHhcC
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDN-EMQMDS-REYLSRRRTILQKEG 245 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~-~~~~~~-~~yKs~~R~~i~~~G 245 (290)
..++.||+.+++++|+++|+++.++|+++ +..+...|+..|+..|-..++-.++ ...|.. -.|.. .++..|
T Consensus 214 ~~~l~pGa~ElL~~Lk~~GiklaIaSn~~---~~~~~~~L~~lgL~~yFd~Iv~sddv~~~KP~Peifl~----A~~~lg 286 (381)
T PLN02575 214 IYRLRTGSQEFVNVLMNYKIPMALVSTRP---RKTLENAIGSIGIRGFFSVIVAAEDVYRGKPDPEMFIY----AAQLLN 286 (381)
T ss_pred CCCcCcCHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHHcCCHHHceEEEecCcCCCCCCCHHHHHH----HHHHcC
Confidence 35789999999999999999999999976 6677778888997655333333222 222222 22322 222233
Q ss_pred CeE--EEEeCCCcccccCCC-CcceEEEcc
Q 044563 246 FHI--TGLISNQMDALIGQS-LGKRVFKLP 272 (290)
Q Consensus 246 YrI--v~~iGDq~sDl~G~~-~g~r~fkLP 272 (290)
... ..+|||...|+.... .|-+++-+.
T Consensus 287 l~Peecl~IGDS~~DIeAAk~AGm~~IgV~ 316 (381)
T PLN02575 287 FIPERCIVFGNSNQTVEAAHDARMKCVAVA 316 (381)
T ss_pred CCcccEEEEcCCHHHHHHHHHcCCEEEEEC
Confidence 222 456999988887532 244444443
No 54
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=97.29 E-value=0.0012 Score=57.09 Aligned_cols=111 Identities=9% Similarity=0.150 Sum_probs=66.7
Q ss_pred CCCcEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHH
Q 044563 128 NGLDVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELL 207 (290)
Q Consensus 128 ~g~~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL 207 (290)
.+-+++|+|+|+||.... ...+.|++.++++.|+++|++++++||.+. +......+
T Consensus 23 ~~v~~vv~D~Dgtl~~~~----------------------~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~--~~~~~~~~ 78 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYPD----------------------HNEAYPALRDWIEELKAAGRKLLIVSNNAG--EQRAKAVE 78 (170)
T ss_pred CCCCEEEEecCCccccCC----------------------CCCcChhHHHHHHHHHHcCCEEEEEeCCch--HHHHHHHH
Confidence 455799999999766320 125578999999999999999999999863 23334445
Q ss_pred HhCCCCCCCcceeecCcccCcchHHhhHHHHHHHHhcCCeEEEEeCCCc-ccccCC-CCcceEEEc
Q 044563 208 ISAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGFHITGLISNQM-DALIGQ-SLGKRVFKL 271 (290)
Q Consensus 208 ~~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GYrIv~~iGDq~-sDl~G~-~~g~r~fkL 271 (290)
+..|...+ . . ...++...|+...++ +.-..-+ +.+|||+. .|+.+. ..|-+++-+
T Consensus 79 ~~~gl~~~---~-~---~~KP~p~~~~~~l~~-~~~~~~~-~l~IGDs~~~Di~aA~~aGi~~i~v 135 (170)
T TIGR01668 79 KALGIPVL---P-H---AVKPPGCAFRRAHPE-MGLTSEQ-VAVVGDRLFTDVMGGNRNGSYTILV 135 (170)
T ss_pred HHcCCEEE---c-C---CCCCChHHHHHHHHH-cCCCHHH-EEEECCcchHHHHHHHHcCCeEEEE
Confidence 66675421 1 1 111112224332221 1111112 67999998 699876 345554443
No 55
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=97.27 E-value=0.0011 Score=54.93 Aligned_cols=66 Identities=18% Similarity=0.175 Sum_probs=43.7
Q ss_pred EEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCC-CccchHHHHHHHHhC
Q 044563 132 VVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRK-HEGQRNATTELLISA 210 (290)
Q Consensus 132 AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR-~e~~r~~T~~NL~~~ 210 (290)
++|||+|+||...+.- ..+... +. ...++.|++.++++.|+++|+++.++|++ .. ..+..-|+..
T Consensus 2 li~~DlD~Tl~~~~~~------~~~~~~----~~-~~~~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~---~~~~~~l~~~ 67 (128)
T TIGR01681 2 VIVFDLDNTLWTGENI------VVGEDP----II-DLEVTIKEIRDKLQTLKKNGFLLALASYNDDP---HVAYELLKIF 67 (128)
T ss_pred EEEEeCCCCCCCCCcc------cccCCc----ch-hhHHHHHHHHHHHHHHHHCCeEEEEEeCCCCH---HHHHHHHHhc
Confidence 7899999988865310 001000 00 01168999999999999999999999998 43 3344445555
Q ss_pred C
Q 044563 211 G 211 (290)
Q Consensus 211 G 211 (290)
|
T Consensus 68 ~ 68 (128)
T TIGR01681 68 E 68 (128)
T ss_pred c
Confidence 5
No 56
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=97.25 E-value=0.0015 Score=56.14 Aligned_cols=94 Identities=10% Similarity=0.065 Sum_probs=56.1
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCC-CcceeecCccc----Ccc-hHHhhHHHHHHH
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGW-SSLIMRLDNEM----QMD-SREYLSRRRTIL 241 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~-d~LiLR~~~~~----~~~-~~~yKs~~R~~i 241 (290)
..++.|++.++++.|+ .+++++||.+. ......|+..|+..+ +.++-...... .|+ .-.|. ...+++
T Consensus 82 ~~~~~~g~~~~L~~L~---~~~~i~Tn~~~---~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~-~~~~~~ 154 (184)
T TIGR01993 82 KLKPDPELRNLLLRLP---GRKIIFTNGDR---AHARRALNRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYE-KALREA 154 (184)
T ss_pred hCCCCHHHHHHHHhCC---CCEEEEeCCCH---HHHHHHHHHcCcHhhhCeEEEeecccCccCCCCCCHHHHH-HHHHHh
Confidence 3558899999999997 47999999764 456677888887654 44444322221 122 22233 222233
Q ss_pred HhcCCeEEEEeCCCcccccCC-CCcceEE
Q 044563 242 QKEGFHITGLISNQMDALIGQ-SLGKRVF 269 (290)
Q Consensus 242 ~~~GYrIv~~iGDq~sDl~G~-~~g~r~f 269 (290)
-.+.-++ ..|||...|+.+. ..|-+++
T Consensus 155 ~~~~~~~-l~vgD~~~di~aA~~~G~~~i 182 (184)
T TIGR01993 155 GVDPERA-IFFDDSARNIAAAKALGMKTV 182 (184)
T ss_pred CCCccce-EEEeCCHHHHHHHHHcCCEEe
Confidence 2223344 4899999998754 2344443
No 57
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=97.21 E-value=0.0041 Score=61.89 Aligned_cols=98 Identities=8% Similarity=0.078 Sum_probs=64.2
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCcc--cCcchHHhhHHHHHHHHhcC
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDNE--MQMDSREYLSRRRTILQKEG 245 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~~--~~~~~~~yKs~~R~~i~~~G 245 (290)
..++.||+.+++++|+++|+++.++||.+ +..+.+.|+..|+..|-..++-.++. .+++. .|... +++.+
T Consensus 328 ~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~---~~~~~~~l~~~~l~~~f~~i~~~d~v~~~~kP~-~~~~a----l~~l~ 399 (459)
T PRK06698 328 KGALYPNVKEIFTYIKENNCSIYIASNGL---TEYLRAIVSYYDLDQWVTETFSIEQINSLNKSD-LVKSI----LNKYD 399 (459)
T ss_pred CCCcCCCHHHHHHHHHHCCCeEEEEeCCc---hHHHHHHHHHCCcHhhcceeEecCCCCCCCCcH-HHHHH----HHhcC
Confidence 35778999999999999999999999965 45666778888886553333332221 12222 23322 22223
Q ss_pred CeEEEEeCCCcccccCC-CCcceEEEccC
Q 044563 246 FHITGLISNQMDALIGQ-SLGKRVFKLPN 273 (290)
Q Consensus 246 YrIv~~iGDq~sDl~G~-~~g~r~fkLPN 273 (290)
..=...|||...|+.+. ..|-+++-++.
T Consensus 400 ~~~~v~VGDs~~Di~aAk~AG~~~I~v~~ 428 (459)
T PRK06698 400 IKEAAVVGDRLSDINAAKDNGLIAIGCNF 428 (459)
T ss_pred cceEEEEeCCHHHHHHHHHCCCeEEEEeC
Confidence 33478999999999764 34666665543
No 58
>PHA02597 30.2 hypothetical protein; Provisional
Probab=97.20 E-value=0.0018 Score=56.29 Aligned_cols=99 Identities=10% Similarity=-0.040 Sum_probs=56.7
Q ss_pred hcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHH--HHHhCCCCCCCcceeecCcccCcchHHhhHHHHHHHHhc
Q 044563 167 AKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTE--LLISAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKE 244 (290)
Q Consensus 167 ~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~--NL~~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~ 244 (290)
...++.||+.+++++|+++| .++++|+.++.....-.+ +|...+..-++..+--.. ..++ +......+++-
T Consensus 71 ~~~~~~pG~~e~L~~L~~~~-~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~i~~~~~-~~~k-----p~~~~~a~~~~ 143 (197)
T PHA02597 71 RYLSAYDDALDVINKLKEDY-DFVAVTALGDSIDALLNRQFNLNALFPGAFSEVLMCGH-DESK-----EKLFIKAKEKY 143 (197)
T ss_pred HhccCCCCHHHHHHHHHhcC-CEEEEeCCccchhHHHHhhCCHHHhCCCcccEEEEecc-Cccc-----HHHHHHHHHHh
Confidence 34668999999999999975 688889976543322222 223222111233333222 2222 11222333334
Q ss_pred CCeEEEEeCCCcccccCCC-C--cceEEEcc
Q 044563 245 GFHITGLISNQMDALIGQS-L--GKRVFKLP 272 (290)
Q Consensus 245 GYrIv~~iGDq~sDl~G~~-~--g~r~fkLP 272 (290)
|-..+..|||...|+.+.. . |-+++-.+
T Consensus 144 ~~~~~v~vgDs~~di~aA~~a~~Gi~~i~~~ 174 (197)
T PHA02597 144 GDRVVCFVDDLAHNLDAAHEALSQLPVIHML 174 (197)
T ss_pred CCCcEEEeCCCHHHHHHHHHHHcCCcEEEec
Confidence 4567889999999998763 3 66665553
No 59
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=97.15 E-value=0.00081 Score=59.57 Aligned_cols=54 Identities=26% Similarity=0.317 Sum_probs=39.4
Q ss_pred EEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCC
Q 044563 133 VLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGY 212 (290)
Q Consensus 133 vVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy 212 (290)
|++|+||||.+... ..++.+.+.+++|+++|++|+++|||+...- ..-++..|.
T Consensus 2 i~~DlDGTLL~~~~-----------------------~~~~~~~~~l~~l~~~gi~~~i~TgR~~~~~---~~~~~~l~~ 55 (221)
T TIGR02463 2 VFSDLDGTLLDSHS-----------------------YDWQPAAPWLTRLQEAGIPVILCTSKTAAEV---EYLQKALGL 55 (221)
T ss_pred EEEeCCCCCcCCCC-----------------------CCcHHHHHHHHHHHHCCCeEEEEcCCCHHHH---HHHHHHcCC
Confidence 78999998887421 1245578899999999999999999986543 333444454
No 60
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=97.13 E-value=0.0017 Score=58.95 Aligned_cols=57 Identities=18% Similarity=0.299 Sum_probs=42.0
Q ss_pred cEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhC
Q 044563 131 DVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISA 210 (290)
Q Consensus 131 ~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~ 210 (290)
..+++||||||.+... .--|.+.+.+++++++|+.|++.|||+-. ....-++..
T Consensus 4 kli~~DlDGTLl~~~~-----------------------~i~~~~~~ai~~~~~~G~~~~iaTGR~~~---~~~~~~~~l 57 (272)
T PRK10530 4 RVIALDLDGTLLTPKK-----------------------TILPESLEALARAREAGYKVIIVTGRHHV---AIHPFYQAL 57 (272)
T ss_pred cEEEEeCCCceECCCC-----------------------ccCHHHHHHHHHHHHCCCEEEEEcCCChH---HHHHHHHhc
Confidence 5899999998887421 12345788899999999999999999853 234455566
Q ss_pred CCC
Q 044563 211 GYR 213 (290)
Q Consensus 211 Gy~ 213 (290)
|+.
T Consensus 58 ~~~ 60 (272)
T PRK10530 58 ALD 60 (272)
T ss_pred CCC
Confidence 664
No 61
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=97.13 E-value=0.00094 Score=66.42 Aligned_cols=112 Identities=21% Similarity=0.256 Sum_probs=75.5
Q ss_pred CcEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHH-
Q 044563 130 LDVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLI- 208 (290)
Q Consensus 130 ~~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~- 208 (290)
++.||+|||||+..+-.. .|.+ ...|++=---++.+||-..-..|++|.|+|.|+-.|...|..-|+
T Consensus 375 ~kiVVsDiDGTITkSD~~-Ghv~-----------~miGkdwth~gVAkLYtdI~rNGYkI~YltsR~~Gqa~sTrsylrn 442 (580)
T COG5083 375 KKIVVSDIDGTITKSDAL-GHVK-----------QMIGKDWTHNGVAKLYTDIDRNGYKIKYLTSRSYGQADSTRSYLRN 442 (580)
T ss_pred CcEEEEecCCcEEehhhH-HHHH-----------HHhccchhhcchhhhhhhhccCceEEEEEecccccchhhhhhHHHh
Confidence 457999999987765321 1111 112222233468899999999999999999999999988877666
Q ss_pred --hCCCCCCC----------------cceeecCcccCcchHHhhHHHHHHHHhcCCeEE---EEeCCCccccc
Q 044563 209 --SAGYRGWS----------------SLIMRLDNEMQMDSREYLSRRRTILQKEGFHIT---GLISNQMDALI 260 (290)
Q Consensus 209 --~~Gy~~~d----------------~LiLR~~~~~~~~~~~yKs~~R~~i~~~GYrIv---~~iGDq~sDl~ 260 (290)
..||.-|+ .||+|.+. .||-+.-+.|.+.+..-. +=+|....|..
T Consensus 443 ieQngykLpdgpviLspd~t~aal~relIlrkpE-------~FKiayLndl~slf~e~~PFyAGFGNriTDvi 508 (580)
T COG5083 443 IEQNGYKLPDGPVILSPDRTMAALYRELILRKPE-------VFKIAYLNDLKSLFIEFDPFYAGFGNRITDVI 508 (580)
T ss_pred hhhcCccCCCCCEeeccchhhhhhhhhhhhcChH-------HHHHHHHHHHHHhhCcCChhhccccccchhhe
Confidence 45776443 34444333 388888888887664433 55677777764
No 62
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=97.06 E-value=0.001 Score=60.40 Aligned_cols=57 Identities=23% Similarity=0.300 Sum_probs=48.7
Q ss_pred EEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHh-CC
Q 044563 133 VLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLIS-AG 211 (290)
Q Consensus 133 vVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~-~G 211 (290)
++||+||||-+.. .++|++.+.++.++++|++++|+||-....+....+.|.+ .|
T Consensus 1 ~lfD~DGvL~~~~------------------------~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g 56 (236)
T TIGR01460 1 FLFDIDGVLWLGH------------------------KPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLG 56 (236)
T ss_pred CEEeCcCccCcCC------------------------ccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5899999776531 3478899999999999999999998888788888899999 68
Q ss_pred CC
Q 044563 212 YR 213 (290)
Q Consensus 212 y~ 213 (290)
++
T Consensus 57 ~~ 58 (236)
T TIGR01460 57 VD 58 (236)
T ss_pred CC
Confidence 75
No 63
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=97.06 E-value=0.0017 Score=59.11 Aligned_cols=55 Identities=20% Similarity=0.241 Sum_probs=41.8
Q ss_pred EEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCC
Q 044563 133 VLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGY 212 (290)
Q Consensus 133 vVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy 212 (290)
|++|+||||.+... ..++.+.+.+++|+++|++|+++|||+-. ...+-+++.|+
T Consensus 2 i~~DlDGTll~~~~-----------------------~~~~~~~~~i~~l~~~g~~~~~~TgR~~~---~~~~~~~~~~~ 55 (256)
T TIGR01486 2 IFTDLDGTLLDPHG-----------------------YDWGPAKEVLERLQELGIPVIPCTSKTAA---EVEYLRKELGL 55 (256)
T ss_pred EEEcCCCCCcCCCC-----------------------cCchHHHHHHHHHHHCCCeEEEEcCCCHH---HHHHHHHHcCC
Confidence 78999998876410 12446889999999999999999999854 34556677777
Q ss_pred C
Q 044563 213 R 213 (290)
Q Consensus 213 ~ 213 (290)
+
T Consensus 56 ~ 56 (256)
T TIGR01486 56 E 56 (256)
T ss_pred C
Confidence 5
No 64
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=97.06 E-value=0.0019 Score=59.92 Aligned_cols=83 Identities=25% Similarity=0.253 Sum_probs=58.6
Q ss_pred cEEEEecccccccChh-------hhh---hc--cCC--C--CccchHHHH----HhhcCc-CcHHHHHHHHHHHhCCCeE
Q 044563 131 DVVLMDIDDIFASSSK-------YSN---LL--IDR--V--NVRGYIECI----EEAKHL-KHMFTLKLFMKLQVRGWPV 189 (290)
Q Consensus 131 ~AvVfDIDetLsn~~y-------~~~---~~--~G~--~--~~~~w~~Wv----~~~~ap-aip~~l~l~~~l~~~Gv~V 189 (290)
--||||||+||....- +.. +. .+. . -.+.+.+|+ ...+.. --+.+.++++.++..|++|
T Consensus 21 tLvvfDiDdTLi~~~~~lg~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~lie~~~~~~i~~lq~~~~~v 100 (252)
T PF11019_consen 21 TLVVFDIDDTLITPKQPLGSPAWYQWQLGKLQKRGKSEYKAVECIFEEWLSLIFELRKMELIESDVPNIINSLQNKGIPV 100 (252)
T ss_pred eEEEEEcchhhhcCccccCCchhHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhhcceEEcchhHHHHHHHHHHCCCcE
Confidence 4799999997766531 100 11 010 1 124466776 333333 3356778999999999999
Q ss_pred EEecCCCccchHHHHHHHHhCCCC
Q 044563 190 ILLSRKHEGQRNATTELLISAGYR 213 (290)
Q Consensus 190 ~~iSgR~e~~r~~T~~NL~~~Gy~ 213 (290)
+-+|.|+...+..|.+.|++.|+.
T Consensus 101 ~alT~~~~~~~~~t~~~Lk~~gi~ 124 (252)
T PF11019_consen 101 IALTARGPNMEDWTLRELKSLGID 124 (252)
T ss_pred EEEcCCChhhHHHHHHHHHHCCCC
Confidence 999999999999999999999974
No 65
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=97.05 E-value=0.00048 Score=60.29 Aligned_cols=107 Identities=12% Similarity=0.122 Sum_probs=60.8
Q ss_pred CCcEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHH
Q 044563 129 GLDVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLI 208 (290)
Q Consensus 129 g~~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~ 208 (290)
+..+|+||+||||.+..-|.. . +...+..|... + -.-++.++++|+++.++|||+. ..+.+-|+
T Consensus 20 ~ikli~~D~Dgtl~~~~i~~~----~-~~~~~~~~~~~--d------~~~i~~L~~~Gi~v~I~T~~~~---~~v~~~l~ 83 (183)
T PRK09484 20 NIRLLICDVDGVFSDGLIYMG----N-NGEELKAFNVR--D------GYGIRCLLTSGIEVAIITGRKS---KLVEDRMT 83 (183)
T ss_pred CceEEEEcCCeeeecCEEEEc----C-CCCEEEEEecc--c------hHHHHHHHHCCCEEEEEeCCCc---HHHHHHHH
Confidence 467999999997776421110 0 01112222110 0 1134566789999999999964 45667788
Q ss_pred hCCCCCCCcceeecCcccCcchHHhhHHHHHHHHhcC--CeEEEEeCCCcccccCC
Q 044563 209 SAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEG--FHITGLISNQMDALIGQ 262 (290)
Q Consensus 209 ~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~G--YrIv~~iGDq~sDl~G~ 262 (290)
+.|+..+ + .... .+ -...++.+++.| ..=+.+|||...|+...
T Consensus 84 ~lgl~~~---f-~g~~--~k-----~~~l~~~~~~~gl~~~ev~~VGDs~~D~~~a 128 (183)
T PRK09484 84 TLGITHL---Y-QGQS--NK-----LIAFSDLLEKLAIAPEQVAYIGDDLIDWPVM 128 (183)
T ss_pred HcCCcee---e-cCCC--cH-----HHHHHHHHHHhCCCHHHEEEECCCHHHHHHH
Confidence 8887532 2 1111 11 122233333334 33488999999999764
No 66
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=97.03 E-value=0.0024 Score=58.50 Aligned_cols=57 Identities=14% Similarity=0.158 Sum_probs=42.1
Q ss_pred cEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhC
Q 044563 131 DVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISA 210 (290)
Q Consensus 131 ~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~ 210 (290)
..+++|+||||.+... ..-+.+.+.+++|+++|++|++.|||+-. ...+-++..
T Consensus 3 kli~~DlDGTLl~~~~-----------------------~i~~~~~~ai~~l~~~G~~~~iaTGR~~~---~~~~~~~~l 56 (272)
T PRK15126 3 RLAAFDMDGTLLMPDH-----------------------HLGEKTLSTLARLRERDITLTFATGRHVL---EMQHILGAL 56 (272)
T ss_pred cEEEEeCCCcCcCCCC-----------------------cCCHHHHHHHHHHHHCCCEEEEECCCCHH---HHHHHHHHc
Confidence 4899999998876411 12345788899999999999999999853 334455666
Q ss_pred CCC
Q 044563 211 GYR 213 (290)
Q Consensus 211 Gy~ 213 (290)
|+.
T Consensus 57 ~~~ 59 (272)
T PRK15126 57 SLD 59 (272)
T ss_pred CCC
Confidence 765
No 67
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=97.02 E-value=0.0014 Score=57.35 Aligned_cols=55 Identities=18% Similarity=0.277 Sum_probs=41.1
Q ss_pred EEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCC
Q 044563 133 VLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGY 212 (290)
Q Consensus 133 vVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy 212 (290)
|++||||||.+... ..-|.+++.++.|+++|+++++.|||+-. ....-+...|+
T Consensus 1 i~~DlDGTLl~~~~-----------------------~i~~~~~~al~~l~~~g~~~~i~TGR~~~---~~~~~~~~~~~ 54 (254)
T PF08282_consen 1 IFSDLDGTLLNSDG-----------------------KISPETIEALKELQEKGIKLVIATGRSYS---SIKRLLKELGI 54 (254)
T ss_dssp EEEECCTTTCSTTS-----------------------SSCHHHHHHHHHHHHTTCEEEEECSSTHH---HHHHHHHHTTH
T ss_pred cEEEECCceecCCC-----------------------eeCHHHHHHHHhhcccceEEEEEccCccc---ccccccccccc
Confidence 68999999877311 12367999999999999999999999743 34455555565
Q ss_pred C
Q 044563 213 R 213 (290)
Q Consensus 213 ~ 213 (290)
.
T Consensus 55 ~ 55 (254)
T PF08282_consen 55 D 55 (254)
T ss_dssp C
T ss_pred h
Confidence 4
No 68
>PRK10976 putative hydrolase; Provisional
Probab=96.99 E-value=0.0024 Score=58.08 Aligned_cols=57 Identities=16% Similarity=0.232 Sum_probs=41.4
Q ss_pred cEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhC
Q 044563 131 DVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISA 210 (290)
Q Consensus 131 ~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~ 210 (290)
+.+++|+||||.+... .--|.+.+.+++++++|++|++.|||+-.. ...-+...
T Consensus 3 kli~~DlDGTLl~~~~-----------------------~is~~~~~ai~~l~~~G~~~~iaTGR~~~~---~~~~~~~l 56 (266)
T PRK10976 3 QVVASDLDGTLLSPDH-----------------------TLSPYAKETLKLLTARGIHFVFATGRHHVD---VGQIRDNL 56 (266)
T ss_pred eEEEEeCCCCCcCCCC-----------------------cCCHHHHHHHHHHHHCCCEEEEEcCCChHH---HHHHHHhc
Confidence 4899999998887411 112457888999999999999999998542 33345556
Q ss_pred CCC
Q 044563 211 GYR 213 (290)
Q Consensus 211 Gy~ 213 (290)
|+.
T Consensus 57 ~~~ 59 (266)
T PRK10976 57 EIK 59 (266)
T ss_pred CCC
Confidence 664
No 69
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=96.98 E-value=0.0031 Score=56.84 Aligned_cols=101 Identities=17% Similarity=0.173 Sum_probs=65.7
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCC-CcceeecCcccCcch--HHhhHHHHHHHHhc
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGW-SSLIMRLDNEMQMDS--REYLSRRRTILQKE 244 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~-d~LiLR~~~~~~~~~--~~yKs~~R~~i~~~ 244 (290)
..+++||+.+|++.|+++|+.+...|+.+ |..+...|..+|...+ +..+-..+...+|.. .-.+..+|-. +.-
T Consensus 84 ~~~~~pGv~~~l~~L~~~~i~~avaS~s~---~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lg-v~P 159 (221)
T COG0637 84 GLKPIPGVVELLEQLKARGIPLAVASSSP---RRAAERVLARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLG-VDP 159 (221)
T ss_pred CCCCCccHHHHHHHHHhcCCcEEEecCCh---HHHHHHHHHHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcC-CCh
Confidence 46899999999999999999999999965 6778888888886533 344433333333322 2122222211 222
Q ss_pred CCeEEEEeCCCcccccCC-CCcceEEEccCC
Q 044563 245 GFHITGLISNQMDALIGQ-SLGKRVFKLPNP 274 (290)
Q Consensus 245 GYrIv~~iGDq~sDl~G~-~~g~r~fkLPNP 274 (290)
.-. ..|.|....+..+ ..|-+.|-+||+
T Consensus 160 ~~C--vviEDs~~Gi~Aa~aAGm~vv~v~~~ 188 (221)
T COG0637 160 EEC--VVVEDSPAGIQAAKAAGMRVVGVPAG 188 (221)
T ss_pred HHe--EEEecchhHHHHHHHCCCEEEEecCC
Confidence 223 3578888877654 468889999983
No 70
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.0034 Score=60.43 Aligned_cols=116 Identities=14% Similarity=0.087 Sum_probs=79.6
Q ss_pred EEEEecccccccChhhhhhccCCCCc-cchHHHHHh-hcCcCcHHHHHHHHHHHhCC-CeEEEecCCCccchHHHHHHHH
Q 044563 132 VVLMDIDDIFASSSKYSNLLIDRVNV-RGYIECIEE-AKHLKHMFTLKLFMKLQVRG-WPVILLSRKHEGQRNATTELLI 208 (290)
Q Consensus 132 AvVfDIDetLsn~~y~~~~~~G~~~~-~~w~~Wv~~-~~apaip~~l~l~~~l~~~G-v~V~~iSgR~e~~r~~T~~NL~ 208 (290)
-+|-|||||+-++.-- -.+ ..|..|... -.-+++||+-.+|+.|.+.| ..|||+|+-+...-+--.+-|-
T Consensus 163 giISDiDDTV~~T~V~-------~~~r~~~~s~~l~~~tr~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L~efi~ 235 (373)
T COG4850 163 GIISDIDDTVKVTGVT-------EGPRKAGRSLLLHALTRQVIPGVSAWYRALTNLGDAPVFYVSNSPWQLFPTLQEFIT 235 (373)
T ss_pred eeeeccccceEecccc-------cchHHHHHHhhhcccccCCCCCHHHHHHHHHhcCCCCeEEecCChhHhHHHHHHHHh
Confidence 6899999988887321 111 236666643 45689999999999999999 8999999998876665566666
Q ss_pred hCCCCCCCcceeecCc-----ccCcchHHhhHHHHHHHHhcCCeEEEEeCCC
Q 044563 209 SAGYRGWSSLIMRLDN-----EMQMDSREYLSRRRTILQKEGFHITGLISNQ 255 (290)
Q Consensus 209 ~~Gy~~~d~LiLR~~~-----~~~~~~~~yKs~~R~~i~~~GYrIv~~iGDq 255 (290)
+.+|| +--++||.-+ -....+..-+...|.-+.+.+-+=+-.+||.
T Consensus 236 ~~~~P-~GPl~L~~~g~~~~~i~~sga~rK~~~l~nil~~~p~~kfvLVGDs 286 (373)
T COG4850 236 NRNFP-YGPLLLRRWGGVLDNIIESGAARKGQSLRNILRRYPDRKFVLVGDS 286 (373)
T ss_pred cCCCC-CCchhHhhcCCcccccccchhhhcccHHHHHHHhCCCceEEEecCC
Confidence 77897 4456666332 1112222234556767777776666677875
No 71
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=96.96 E-value=0.0024 Score=57.82 Aligned_cols=55 Identities=16% Similarity=0.276 Sum_probs=41.4
Q ss_pred EEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCC
Q 044563 132 VVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAG 211 (290)
Q Consensus 132 AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~G 211 (290)
.|++|+||||.+.. ...+++.+.+++++++|+++++.|||+.. ....-+.+.|
T Consensus 1 li~~DlDGTLl~~~------------------------~~~~~~~~ai~~l~~~G~~~vi~TgR~~~---~~~~~~~~lg 53 (225)
T TIGR02461 1 VIFTDLDGTLLPPG------------------------YEPGPAREALEELKDLGFPIVFVSSKTRA---EQEYYREELG 53 (225)
T ss_pred CEEEeCCCCCcCCC------------------------CCchHHHHHHHHHHHCCCEEEEEeCCCHH---HHHHHHHHcC
Confidence 37899999887731 11356899999999999999999999854 2344566777
Q ss_pred CC
Q 044563 212 YR 213 (290)
Q Consensus 212 y~ 213 (290)
+.
T Consensus 54 ~~ 55 (225)
T TIGR02461 54 VE 55 (225)
T ss_pred CC
Confidence 53
No 72
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=96.96 E-value=0.0023 Score=52.77 Aligned_cols=92 Identities=15% Similarity=0.167 Sum_probs=61.4
Q ss_pred hhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCC-CCcceeecCcccCcc-hHHhhHHHHHHHHh
Q 044563 166 EAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRG-WSSLIMRLDNEMQMD-SREYLSRRRTILQK 243 (290)
Q Consensus 166 ~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~-~d~LiLR~~~~~~~~-~~~yKs~~R~~i~~ 243 (290)
....++.|++.++++.|+++|++++++||.+ +......|+..|..+ .+.++...+....++ ...|+...+ ++.-
T Consensus 73 ~~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~---~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~-~~~~ 148 (176)
T PF13419_consen 73 ESKLQPYPGVRELLERLKAKGIPLVIVSNGS---RERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALE-KLGI 148 (176)
T ss_dssp HGGEEESTTHHHHHHHHHHTTSEEEEEESSE---HHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHH-HHTS
T ss_pred hhccchhhhhhhhhhhcccccceeEEeecCC---cccccccccccccccccccccccchhhhhhhHHHHHHHHHH-HcCC
Confidence 3678899999999999999999999999996 455667777788653 355555433322332 223433222 2222
Q ss_pred cCCeEEEEeCCCcccccCC
Q 044563 244 EGFHITGLISNQMDALIGQ 262 (290)
Q Consensus 244 ~GYrIv~~iGDq~sDl~G~ 262 (290)
..-+ +..|||...|+.+.
T Consensus 149 ~p~~-~~~vgD~~~d~~~A 166 (176)
T PF13419_consen 149 PPEE-ILFVGDSPSDVEAA 166 (176)
T ss_dssp SGGG-EEEEESSHHHHHHH
T ss_pred Ccce-EEEEeCCHHHHHHH
Confidence 2333 56899999999754
No 73
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=96.96 E-value=0.0028 Score=58.49 Aligned_cols=57 Identities=19% Similarity=0.206 Sum_probs=42.8
Q ss_pred cEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhC
Q 044563 131 DVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISA 210 (290)
Q Consensus 131 ~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~ 210 (290)
..+++||||||.+... ...+++.+.+++|+++|+++++.|||+.. ....-++..
T Consensus 5 kli~~DlDGTLl~~~~-----------------------~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~---~~~~~~~~l 58 (273)
T PRK00192 5 LLVFTDLDGTLLDHHT-----------------------YSYEPAKPALKALKEKGIPVIPCTSKTAA---EVEVLRKEL 58 (273)
T ss_pred eEEEEcCcccCcCCCC-----------------------cCcHHHHHHHHHHHHCCCEEEEEcCCCHH---HHHHHHHHc
Confidence 4899999998887411 12456888999999999999999999753 344456666
Q ss_pred CCC
Q 044563 211 GYR 213 (290)
Q Consensus 211 Gy~ 213 (290)
|+.
T Consensus 59 ~l~ 61 (273)
T PRK00192 59 GLE 61 (273)
T ss_pred CCC
Confidence 764
No 74
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=96.94 E-value=0.0018 Score=57.44 Aligned_cols=57 Identities=18% Similarity=0.184 Sum_probs=40.7
Q ss_pred cEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhC
Q 044563 131 DVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISA 210 (290)
Q Consensus 131 ~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~ 210 (290)
..+++|+||||.+... .--|.+.+.+++++++|++|++.|||+..... +-++..
T Consensus 4 kli~~DlDGTLl~~~~-----------------------~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~---~~~~~l 57 (230)
T PRK01158 4 KAIAIDIDGTITDKDR-----------------------RLSLKAVEAIRKAEKLGIPVILATGNVLCFAR---AAAKLI 57 (230)
T ss_pred eEEEEecCCCcCCCCC-----------------------ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHH---HHHHHh
Confidence 4899999998886411 11245778889999999999999999854322 334455
Q ss_pred CCC
Q 044563 211 GYR 213 (290)
Q Consensus 211 Gy~ 213 (290)
|++
T Consensus 58 ~~~ 60 (230)
T PRK01158 58 GTS 60 (230)
T ss_pred CCC
Confidence 654
No 75
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=96.89 E-value=0.0079 Score=52.63 Aligned_cols=95 Identities=14% Similarity=0.200 Sum_probs=59.8
Q ss_pred CcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCC-CcceeecCcccCcc-hHHhhHHHHHHHHhc-C
Q 044563 169 HLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGW-SSLIMRLDNEMQMD-SREYLSRRRTILQKE-G 245 (290)
Q Consensus 169 apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~-d~LiLR~~~~~~~~-~~~yKs~~R~~i~~~-G 245 (290)
..+.|+++++++.++++ +++.++||... +....-|++.|+..+ +..+-..+....++ .-.|. ..++.. |
T Consensus 96 ~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~---~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~~~~~----~~~~~~~~ 167 (224)
T TIGR02254 96 HQLLPGAFELMENLQQK-FRLYIVTNGVR---ETQYKRLRKSGLFPFFDDIFVSEDAGIQKPDKEIFN----YALERMPK 167 (224)
T ss_pred CeeCccHHHHHHHHHhc-CcEEEEeCCch---HHHHHHHHHCCcHhhcCEEEEcCccCCCCCCHHHHH----HHHHHhcC
Confidence 57899999999999999 99999999764 344456788887543 44433322222222 22233 333333 4
Q ss_pred CeE--EEEeCCCc-ccccCC-CCcceEEEc
Q 044563 246 FHI--TGLISNQM-DALIGQ-SLGKRVFKL 271 (290)
Q Consensus 246 YrI--v~~iGDq~-sDl~G~-~~g~r~fkL 271 (290)
... +..|||+. +|+.+. ..|-.++-+
T Consensus 168 ~~~~~~v~igD~~~~di~~A~~~G~~~i~~ 197 (224)
T TIGR02254 168 FSKEEVLMIGDSLTADIKGGQNAGLDTCWM 197 (224)
T ss_pred CCchheEEECCCcHHHHHHHHHCCCcEEEE
Confidence 443 67999997 799865 345444443
No 76
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=96.88 E-value=0.0076 Score=53.95 Aligned_cols=89 Identities=9% Similarity=0.065 Sum_probs=60.7
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCC--CcceeecCcc-cCc--chHHhhHHHHHHHH
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGW--SSLIMRLDNE-MQM--DSREYLSRRRTILQ 242 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~--d~LiLR~~~~-~~~--~~~~yKs~~R~~i~ 242 (290)
+.+..|++.+|++.+++.| +++++||-. +..+...++..|+..+ ..|...+.+. .+. ....-|...-+++.
T Consensus 66 ~i~l~pga~ell~~lk~~~-~~~IVS~~~---~~~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~~~~~~K~~~l~~l~ 141 (203)
T TIGR02137 66 TLKPLEGAVEFVDWLRERF-QVVILSDTF---YEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFK 141 (203)
T ss_pred hCCCCccHHHHHHHHHhCC-eEEEEeCCh---HHHHHHHHHHcCCchhhceeeEEecCCeeECeeecCcchHHHHHHHHH
Confidence 3478999999999999985 999999954 4577778889998632 1233322010 110 11234666666777
Q ss_pred hcCCeEEEEeCCCcccccC
Q 044563 243 KEGFHITGLISNQMDALIG 261 (290)
Q Consensus 243 ~~GYrIv~~iGDq~sDl~G 261 (290)
+.|.+++ .+||-.+|+.-
T Consensus 142 ~~~~~~v-~vGDs~nDl~m 159 (203)
T TIGR02137 142 SLYYRVI-AAGDSYNDTTM 159 (203)
T ss_pred hhCCCEE-EEeCCHHHHHH
Confidence 7777655 77999999964
No 77
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=96.86 E-value=0.0027 Score=60.46 Aligned_cols=58 Identities=17% Similarity=0.126 Sum_probs=47.3
Q ss_pred EEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhC----CCeEEEecCCCccchHHHHHHH
Q 044563 132 VVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVR----GWPVILLSRKHEGQRNATTELL 207 (290)
Q Consensus 132 AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~----Gv~V~~iSgR~e~~r~~T~~NL 207 (290)
+++||+||||-.. .+++|++.++++.|+++ |..++|+||.....+..-.+-|
T Consensus 2 ~~ifD~DGvL~~g------------------------~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l 57 (321)
T TIGR01456 2 GFAFDIDGVLFRG------------------------KKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEI 57 (321)
T ss_pred EEEEeCcCceECC------------------------ccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHH
Confidence 7999999988653 14599999999999999 9999999998766555555556
Q ss_pred -HhCCCC
Q 044563 208 -ISAGYR 213 (290)
Q Consensus 208 -~~~Gy~ 213 (290)
++.|+.
T Consensus 58 ~~~lG~~ 64 (321)
T TIGR01456 58 SSLLGVD 64 (321)
T ss_pred HHHcCCC
Confidence 888985
No 78
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=96.86 E-value=0.002 Score=58.67 Aligned_cols=58 Identities=19% Similarity=0.179 Sum_probs=41.4
Q ss_pred CcEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHh
Q 044563 130 LDVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLIS 209 (290)
Q Consensus 130 ~~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~ 209 (290)
...+++|+||||.+... .--+.+.+.+++++++|++|++.|||+-..-....+.|.-
T Consensus 3 ~kli~~DlDGTLl~~~~-----------------------~i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~ 59 (264)
T COG0561 3 IKLLAFDLDGTLLDSNK-----------------------TISPETKEALARLREKGVKVVLATGRPLPDVLSILEELGL 59 (264)
T ss_pred eeEEEEcCCCCccCCCC-----------------------ccCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCC
Confidence 35899999998887521 1245688888899999999999999986333333344433
Q ss_pred C
Q 044563 210 A 210 (290)
Q Consensus 210 ~ 210 (290)
.
T Consensus 60 ~ 60 (264)
T COG0561 60 D 60 (264)
T ss_pred C
Confidence 3
No 79
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=96.84 E-value=0.0038 Score=56.57 Aligned_cols=56 Identities=18% Similarity=0.297 Sum_probs=40.8
Q ss_pred EEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCC
Q 044563 132 VVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAG 211 (290)
Q Consensus 132 AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~G 211 (290)
.+++|+||||.+... .--+.+.+.+++++++|+++++.|||+-. ...+-+...|
T Consensus 1 li~~DlDGTLl~~~~-----------------------~i~~~~~~~i~~l~~~G~~~~iaTGR~~~---~~~~~~~~~~ 54 (256)
T TIGR00099 1 LIFIDLDGTLLNDDH-----------------------TISPSTKEALAKLREKGIKVVLATGRPYK---EVKNILKELG 54 (256)
T ss_pred CEEEeCCCCCCCCCC-----------------------ccCHHHHHHHHHHHHCCCeEEEEeCCCHH---HHHHHHHHcC
Confidence 378999998886410 11246788999999999999999999842 3344556667
Q ss_pred CC
Q 044563 212 YR 213 (290)
Q Consensus 212 y~ 213 (290)
+.
T Consensus 55 ~~ 56 (256)
T TIGR00099 55 LD 56 (256)
T ss_pred CC
Confidence 65
No 80
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=96.83 E-value=0.003 Score=55.83 Aligned_cols=46 Identities=20% Similarity=0.321 Sum_probs=35.9
Q ss_pred cEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccc
Q 044563 131 DVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQ 199 (290)
Q Consensus 131 ~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~ 199 (290)
..|++|+||||.+... .--|.+.+.+++++++|++|++.|||+-..
T Consensus 2 k~v~~DlDGTLl~~~~-----------------------~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~ 47 (215)
T TIGR01487 2 KLVAIDIDGTLTEPNR-----------------------MISERAIEAIRKAEKKGIPVSLVTGNTVPF 47 (215)
T ss_pred cEEEEecCCCcCCCCc-----------------------ccCHHHHHHHHHHHHCCCEEEEEcCCcchh
Confidence 4799999998886310 123467888999999999999999998543
No 81
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=96.81 E-value=0.004 Score=54.81 Aligned_cols=137 Identities=11% Similarity=-0.041 Sum_probs=77.0
Q ss_pred CcEEEEecccccccChhhhhhccCCCCccchHH----HHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHH
Q 044563 130 LDVVLMDIDDIFASSSKYSNLLIDRVNVRGYIE----CIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTE 205 (290)
Q Consensus 130 ~~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~----Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~ 205 (290)
|..||||+|.||-+...+.-+. +.+.+..=.+ =......++.|++.++++.|+++|+++.++|+... +.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~--~~~~~~ 78 (174)
T TIGR01685 2 PRVIVFDLDGTLWDHYMISLLG-GPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDV--PEWAYE 78 (174)
T ss_pred CcEEEEeCCCCCcCcccccccC-CCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCC--hHHHHH
Confidence 4589999999998865443322 1122111000 00123567889999999999999999999998722 234455
Q ss_pred HHHhCCCC---------CC-CcceeecCcccCcchHHhhHHHHHHHHhc---C--CeEEEEeCCCcccccCC-CCcceEE
Q 044563 206 LLISAGYR---------GW-SSLIMRLDNEMQMDSREYLSRRRTILQKE---G--FHITGLISNQMDALIGQ-SLGKRVF 269 (290)
Q Consensus 206 NL~~~Gy~---------~~-d~LiLR~~~~~~~~~~~yKs~~R~~i~~~---G--YrIv~~iGDq~sDl~G~-~~g~r~f 269 (290)
.|...|+. .+ +.++-- ... .+ ....... -+.+.+. | ..=..+|||...|+.+. ..|-+++
T Consensus 79 ~L~~~~l~~~~~~~~~~~~Fd~iv~~-~~~-~~-~kp~~~i-~~~~~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i 154 (174)
T TIGR01685 79 ILGTFEITYAGKTVPMHSLFDDRIEI-YKP-NK-AKQLEMI-LQKVNKVDPSVLKPAQILFFDDRTDNVREVWGYGVTSC 154 (174)
T ss_pred HHHhCCcCCCCCcccHHHhceeeeec-cCC-ch-HHHHHHH-HHHhhhcccCCCCHHHeEEEcChhHhHHHHHHhCCEEE
Confidence 66777753 32 222221 111 11 0111111 1122211 1 33467999999999764 3466666
Q ss_pred EccC
Q 044563 270 KLPN 273 (290)
Q Consensus 270 kLPN 273 (290)
-+|.
T Consensus 155 ~v~~ 158 (174)
T TIGR01685 155 YCPS 158 (174)
T ss_pred EcCC
Confidence 6654
No 82
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=96.79 E-value=0.0024 Score=56.27 Aligned_cols=55 Identities=22% Similarity=0.257 Sum_probs=38.1
Q ss_pred EEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCC
Q 044563 133 VLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGY 212 (290)
Q Consensus 133 vVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy 212 (290)
|++|+||||.+... .--|.+.+.+++++++|+.+++.|||+-..... -++..|.
T Consensus 1 i~~DlDGTLl~~~~-----------------------~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~---~~~~l~~ 54 (225)
T TIGR01482 1 IASDIDGTLTDPNR-----------------------AINESALEAIRKAESVGIPVVLVTGNSVQFARA---LAKLIGT 54 (225)
T ss_pred CeEeccCccCCCCc-----------------------ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHH---HHHHhCC
Confidence 58999998887421 112446677889999999999999998654332 3345564
Q ss_pred C
Q 044563 213 R 213 (290)
Q Consensus 213 ~ 213 (290)
+
T Consensus 55 ~ 55 (225)
T TIGR01482 55 P 55 (225)
T ss_pred C
Confidence 4
No 83
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=96.77 E-value=0.0022 Score=56.16 Aligned_cols=116 Identities=10% Similarity=0.115 Sum_probs=64.9
Q ss_pred CcEEEEecccccccCh-hhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHH
Q 044563 130 LDVVLMDIDDIFASSS-KYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLI 208 (290)
Q Consensus 130 ~~AvVfDIDetLsn~~-y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~ 208 (290)
-.++||||||+|.... +|...+ . -...|+. .++ .-++.|+++|+++.++|++++ ..+.+-|+
T Consensus 7 i~~~v~d~dGv~tdg~~~~~~~g--~-~~~~~~~--~D~---------~~~~~L~~~Gi~laIiT~k~~---~~~~~~l~ 69 (169)
T TIGR02726 7 IKLVILDVDGVMTDGRIVINDEG--I-ESRNFDI--KDG---------MGVIVLQLCGIDVAIITSKKS---GAVRHRAE 69 (169)
T ss_pred CeEEEEeCceeeECCeEEEcCCC--c-EEEEEec--chH---------HHHHHHHHCCCEEEEEECCCc---HHHHHHHH
Confidence 4599999999776653 222211 1 0111211 011 124568889999999999864 46777888
Q ss_pred hCCCCCCCcceeecCcccCcchHHhhHHHHHHHHhcCC--eEEEEeCCCcccccCCCCcceEEEccC
Q 044563 209 SAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGF--HITGLISNQMDALIGQSLGKRVFKLPN 273 (290)
Q Consensus 209 ~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GY--rIv~~iGDq~sDl~G~~~g~r~fkLPN 273 (290)
..|+..| +.. . .++ .. ..+..++..|. .=++.|||...|+.......-.|-.+|
T Consensus 70 ~lgi~~~---f~~-~--kpk-p~----~~~~~~~~l~~~~~ev~~iGD~~nDi~~~~~ag~~~am~n 125 (169)
T TIGR02726 70 ELKIKRF---HEG-I--KKK-TE----PYAQMLEEMNISDAEVCYVGDDLVDLSMMKRVGLAVAVGD 125 (169)
T ss_pred HCCCcEE---Eec-C--CCC-HH----HHHHHHHHcCcCHHHEEEECCCHHHHHHHHHCCCeEECcC
Confidence 8898633 211 1 111 11 12222333332 237899999999987533223444444
No 84
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=96.76 E-value=0.0032 Score=57.35 Aligned_cols=56 Identities=11% Similarity=0.132 Sum_probs=41.2
Q ss_pred cEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhC
Q 044563 131 DVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISA 210 (290)
Q Consensus 131 ~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~ 210 (290)
+.|++|+||||.+... .--+.+.+.+++++++|+.|++.|||+-.. ...-++..
T Consensus 4 kli~~DlDGTLl~~~~-----------------------~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~---~~~~~~~l 57 (270)
T PRK10513 4 KLIAIDMDGTLLLPDH-----------------------TISPAVKQAIAAARAKGVNVVLTTGRPYAG---VHRYLKEL 57 (270)
T ss_pred EEEEEecCCcCcCCCC-----------------------ccCHHHHHHHHHHHHCCCEEEEecCCChHH---HHHHHHHh
Confidence 5899999998887421 112457888999999999999999998643 33445555
Q ss_pred CC
Q 044563 211 GY 212 (290)
Q Consensus 211 Gy 212 (290)
|+
T Consensus 58 ~~ 59 (270)
T PRK10513 58 HM 59 (270)
T ss_pred CC
Confidence 65
No 85
>PTZ00174 phosphomannomutase; Provisional
Probab=96.76 E-value=0.0027 Score=57.89 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=35.9
Q ss_pred CcEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCcc
Q 044563 130 LDVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEG 198 (290)
Q Consensus 130 ~~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~ 198 (290)
...|++|+||||.+... .. -|.+.+.+++++++|+++++.|||+-.
T Consensus 5 ~klia~DlDGTLL~~~~-------~i----------------s~~~~~ai~~l~~~Gi~~viaTGR~~~ 50 (247)
T PTZ00174 5 KTILLFDVDGTLTKPRN-------PI----------------TQEMKDTLAKLKSKGFKIGVVGGSDYP 50 (247)
T ss_pred CeEEEEECcCCCcCCCC-------CC----------------CHHHHHHHHHHHHCCCEEEEEcCCCHH
Confidence 35899999998887521 12 245678889999999999999999754
No 86
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=96.73 E-value=0.0035 Score=57.74 Aligned_cols=57 Identities=21% Similarity=0.230 Sum_probs=41.1
Q ss_pred CcEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHh
Q 044563 130 LDVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLIS 209 (290)
Q Consensus 130 ~~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~ 209 (290)
+..|++||||||.+... . .-+.+.+.+++|+++|++|++.|||+-..- ..-++.
T Consensus 7 ~~lI~~DlDGTLL~~~~--------~---------------i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i---~~~~~~ 60 (271)
T PRK03669 7 PLLIFTDLDGTLLDSHT--------Y---------------DWQPAAPWLTRLREAQVPVILCSSKTAAEM---LPLQQT 60 (271)
T ss_pred CeEEEEeCccCCcCCCC--------c---------------CcHHHHHHHHHHHHcCCeEEEEcCCCHHHH---HHHHHH
Confidence 45899999998887411 1 124577888999999999999999986433 334455
Q ss_pred CCC
Q 044563 210 AGY 212 (290)
Q Consensus 210 ~Gy 212 (290)
.|+
T Consensus 61 l~~ 63 (271)
T PRK03669 61 LGL 63 (271)
T ss_pred hCC
Confidence 565
No 87
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=96.72 E-value=0.0026 Score=55.51 Aligned_cols=102 Identities=13% Similarity=0.161 Sum_probs=62.9
Q ss_pred cEEEEecccccccChh-hhhhc--cCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHH
Q 044563 131 DVVLMDIDDIFASSSK-YSNLL--IDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELL 207 (290)
Q Consensus 131 ~AvVfDIDetLsn~~y-~~~~~--~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL 207 (290)
.-+||||||||.+-.. |..++ +..||. .+|- -.+.+.+.|++|-+||||+.. .-++-.
T Consensus 9 kLli~DVDGvLTDG~ly~~~~Gee~KaFnv-------~DG~---------Gik~l~~~Gi~vAIITGr~s~---ive~Ra 69 (170)
T COG1778 9 KLLILDVDGVLTDGKLYYDENGEEIKAFNV-------RDGH---------GIKLLLKSGIKVAIITGRDSP---IVEKRA 69 (170)
T ss_pred eEEEEeccceeecCeEEEcCCCceeeeeec-------cCcH---------HHHHHHHcCCeEEEEeCCCCH---HHHHHH
Confidence 3689999999988753 33332 112332 1111 245688899999999999853 455666
Q ss_pred HhCCCCCCCcceeecCcccCcchHHhhHHHHHHHHhcCCeEEEEeCCCccccc
Q 044563 208 ISAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGFHITGLISNQMDALI 260 (290)
Q Consensus 208 ~~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GYrIv~~iGDq~sDl~ 260 (290)
++.|.. ++++ +..++ -..|+ +-++++ .-++.=+++|||-+.|+.
T Consensus 70 ~~LGI~---~~~q-G~~dK---~~a~~-~L~~~~-~l~~e~~ayiGDD~~Dlp 113 (170)
T COG1778 70 KDLGIK---HLYQ-GISDK---LAAFE-ELLKKL-NLDPEEVAYVGDDLVDLP 113 (170)
T ss_pred HHcCCc---eeee-chHhH---HHHHH-HHHHHh-CCCHHHhhhhcCccccHH
Confidence 778875 3443 22221 11232 233333 356777999999999996
No 88
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=96.72 E-value=0.0027 Score=54.02 Aligned_cols=73 Identities=7% Similarity=-0.067 Sum_probs=45.6
Q ss_pred HHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCcccCcchHHhhHHHHHHHHhcCCeEEEEeCCCcc
Q 044563 178 LFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGFHITGLISNQMD 257 (290)
Q Consensus 178 l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GYrIv~~iGDq~s 257 (290)
.+++|+++|++|+++||++. ..+.+.|+..|+..+ + ... ..+ ...++ ...+++ ...-.-+..+||...
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~---~~~~~~l~~~gi~~~---~-~~~--~~k-~~~~~-~~~~~~-~~~~~~~~~vGDs~~ 103 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKA---KLVEDRCKTLGITHL---Y-QGQ--SNK-LIAFS-DILEKL-ALAPENVAYIGDDLI 103 (154)
T ss_pred HHHHHHHCCCEEEEEECCCC---HHHHHHHHHcCCCEE---E-ecc--cch-HHHHH-HHHHHc-CCCHHHEEEECCCHH
Confidence 68899999999999999875 455678889998632 2 111 111 11111 111111 112345789999999
Q ss_pred cccCC
Q 044563 258 ALIGQ 262 (290)
Q Consensus 258 Dl~G~ 262 (290)
|+...
T Consensus 104 D~~~~ 108 (154)
T TIGR01670 104 DWPVM 108 (154)
T ss_pred HHHHH
Confidence 98754
No 89
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=96.68 E-value=0.01 Score=60.65 Aligned_cols=114 Identities=8% Similarity=0.123 Sum_probs=68.3
Q ss_pred CcEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCcc---------ch
Q 044563 130 LDVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEG---------QR 200 (290)
Q Consensus 130 ~~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~---------~r 200 (290)
.+++.||.||||-....-. . | ..++.+| . ...|++.+.++.|++.|++|+++||-..- ..
T Consensus 168 ~Kia~fD~DGTLi~t~sg~-~-~-~~~~~d~---~-----~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~ 236 (526)
T TIGR01663 168 EKIAGFDLDGTIIKTKSGK-V-F-PKGPDDW---Q-----IIFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFK 236 (526)
T ss_pred CcEEEEECCCCccccCCCc-c-C-CCCHHHe---e-----ecccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHH
Confidence 4699999999776542100 0 0 1344444 2 14688999999999999999999997662 12
Q ss_pred HHHHHHHHhCCCCCCCcceeecCc-ccCcchHHhhHHHHHHHHhc---CCeE----EEEeCCCccccc
Q 044563 201 NATTELLISAGYRGWSSLIMRLDN-EMQMDSREYLSRRRTILQKE---GFHI----TGLISNQMDALI 260 (290)
Q Consensus 201 ~~T~~NL~~~Gy~~~d~LiLR~~~-~~~~~~~~yKs~~R~~i~~~---GYrI----v~~iGDq~sDl~ 260 (290)
..+.+-|+..|.+ .+ .+.-... ..++.. .+.-..+.++ |..| ..+|||..+|..
T Consensus 237 ~ki~~iL~~lgip-fd-viia~~~~~~RKP~----pGm~~~a~~~~~~~~~Id~~~S~~VGDaagr~~ 298 (526)
T TIGR01663 237 AKIEAIVAKLGVP-FQ-VFIAIGAGFYRKPL----TGMWDHLKEEANDGTEIQEDDCFFVGDAAGRPA 298 (526)
T ss_pred HHHHHHHHHcCCc-eE-EEEeCCCCCCCCCC----HHHHHHHHHhcCcccCCCHHHeEEeCCcccchH
Confidence 3466778888986 54 2322221 223321 1222222221 1223 469999998873
No 90
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=96.67 E-value=0.0057 Score=53.77 Aligned_cols=101 Identities=13% Similarity=0.198 Sum_probs=65.9
Q ss_pred CcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCC-CcceeecCcccCcc-hHHhhHHHHHHHHhcCC
Q 044563 169 HLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGW-SSLIMRLDNEMQMD-SREYLSRRRTILQKEGF 246 (290)
Q Consensus 169 apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~-d~LiLR~~~~~~~~-~~~yKs~~R~~i~~~GY 246 (290)
.++.|++.+++++|+++|+++.++||.+. .....-|+..|+..+ +.++-..+....++ .-.|+. .+++-|.
T Consensus 93 ~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~---~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~----~~~~~~~ 165 (221)
T TIGR02253 93 LRVYPGVRDTLMELRESGYRLGIITDGLP---VKQWEKLERLGVRDFFDAVITSEEEGVEKPHPKIFYA----ALKRLGV 165 (221)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEeCCch---HHHHHHHHhCChHHhccEEEEeccCCCCCCCHHHHHH----HHHHcCC
Confidence 47899999999999999999999999863 334456778887643 44444433222232 223332 3333343
Q ss_pred e--EEEEeCCCc-ccccCC-CCcceEEEccCCcc
Q 044563 247 H--ITGLISNQM-DALIGQ-SLGKRVFKLPNPLY 276 (290)
Q Consensus 247 r--Iv~~iGDq~-sDl~G~-~~g~r~fkLPNPmY 276 (290)
. =+..|||.+ .|+.+. ..|-+++-++.+.+
T Consensus 166 ~~~~~~~igDs~~~di~~A~~aG~~~i~~~~~~~ 199 (221)
T TIGR02253 166 KPEEAVMVGDRLDKDIKGAKNLGMKTVWINQGKS 199 (221)
T ss_pred ChhhEEEECCChHHHHHHHHHCCCEEEEECCCCC
Confidence 2 256999999 899875 35777777766543
No 91
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=96.64 E-value=0.0084 Score=57.19 Aligned_cols=69 Identities=16% Similarity=0.259 Sum_probs=50.8
Q ss_pred CcEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHh
Q 044563 130 LDVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLIS 209 (290)
Q Consensus 130 ~~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~ 209 (290)
+.+||||+||||-+.... .-..-|++.+++++|+++|+++.++|++.. ....+-|.+
T Consensus 126 ~kvIvFDLDgTLi~~~~~--------------------v~irdPgV~EaL~~LkekGikLaIaTS~~R---e~v~~~L~~ 182 (301)
T TIGR01684 126 PHVVVFDLDSTLITDEEP--------------------VRIRDPRIYDSLTELKKRGCILVLWSYGDR---DHVVESMRK 182 (301)
T ss_pred ceEEEEecCCCCcCCCCc--------------------cccCCHHHHHHHHHHHHCCCEEEEEECCCH---HHHHHHHHH
Confidence 569999999988875210 002247899999999999999999998753 344578899
Q ss_pred CCCCCCCcceee
Q 044563 210 AGYRGWSSLIMR 221 (290)
Q Consensus 210 ~Gy~~~d~LiLR 221 (290)
.|+..+=..+.-
T Consensus 183 lGLd~YFdvIIs 194 (301)
T TIGR01684 183 VKLDRYFDIIIS 194 (301)
T ss_pred cCCCcccCEEEE
Confidence 998765344444
No 92
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=96.56 E-value=0.0088 Score=53.06 Aligned_cols=101 Identities=11% Similarity=0.078 Sum_probs=67.7
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCc-ccCcchHHhhHHHHHHHHhcCC
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDN-EMQMDSREYLSRRRTILQKEGF 246 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~-~~~~~~~~yKs~~R~~i~~~GY 246 (290)
..++.|++.++++.++++|+++.++||.. +..+...|+..|+.++-..++-.+. ..+++.. ...+..++..|.
T Consensus 90 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~---~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~---~~~~~~~~~~~~ 163 (222)
T PRK10826 90 TRPLLPGVREALALCKAQGLKIGLASASP---LHMLEAVLTMFDLRDYFDALASAEKLPYSKPHP---EVYLNCAAKLGV 163 (222)
T ss_pred CCCCCCCHHHHHHHHHHCCCeEEEEeCCc---HHHHHHHHHhCcchhcccEEEEcccCCCCCCCH---HHHHHHHHHcCC
Confidence 35788999999999999999999999954 4566677888887654333333222 1222211 122333444443
Q ss_pred --eEEEEeCCCcccccCC-CCcceEEEccCC
Q 044563 247 --HITGLISNQMDALIGQ-SLGKRVFKLPNP 274 (290)
Q Consensus 247 --rIv~~iGDq~sDl~G~-~~g~r~fkLPNP 274 (290)
.=+.+|||..+|+... ..|-+++-+|+|
T Consensus 164 ~~~~~~~igDs~~Di~aA~~aG~~~i~v~~~ 194 (222)
T PRK10826 164 DPLTCVALEDSFNGMIAAKAARMRSIVVPAP 194 (222)
T ss_pred CHHHeEEEcCChhhHHHHHHcCCEEEEecCC
Confidence 2266999999999865 467788888876
No 93
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=96.56 E-value=0.014 Score=53.39 Aligned_cols=99 Identities=13% Similarity=0.170 Sum_probs=77.2
Q ss_pred cEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhC
Q 044563 131 DVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISA 210 (290)
Q Consensus 131 ~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~ 210 (290)
..+.+||-|||-+. ..|+|++++-++.|+..+++|=|+||-+.+.+.--.+-|.+.
T Consensus 8 ~gvLlDlSGtLh~e------------------------~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rl 63 (262)
T KOG3040|consen 8 KGVLLDLSGTLHIE------------------------DAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRL 63 (262)
T ss_pred ceEEEeccceEecc------------------------cccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHh
Confidence 47889998877653 128999999999999999999999999988888889999999
Q ss_pred CCCCCCcceeecCcccCcchHHhhHHHHHHHHhcCCeEEEEeCCC-cccccCCCC
Q 044563 211 GYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGFHITGLISNQ-MDALIGQSL 264 (290)
Q Consensus 211 Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GYrIv~~iGDq-~sDl~G~~~ 264 (290)
||.--+.=+.- --...|+-++++++|--..+.|. .+||.|...
T Consensus 64 gf~v~eeei~t-----------sl~aa~~~~~~~~lrP~l~v~d~a~~dF~gidT 107 (262)
T KOG3040|consen 64 GFDVSEEEIFT-----------SLPAARQYLEENQLRPYLIVDDDALEDFDGIDT 107 (262)
T ss_pred CCCccHHHhcC-----------ccHHHHHHHHhcCCCceEEEcccchhhCCCccC
Confidence 99622111111 12357888889999998888765 789999753
No 94
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=96.55 E-value=0.0043 Score=54.15 Aligned_cols=45 Identities=18% Similarity=0.320 Sum_probs=35.7
Q ss_pred EEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccc
Q 044563 133 VLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQ 199 (290)
Q Consensus 133 vVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~ 199 (290)
+++|+||||.+... .+.-+.+.+.+++|+++|+.++++|||+...
T Consensus 2 i~~D~DgTL~~~~~----------------------~~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~ 46 (204)
T TIGR01484 2 LFFDLDGTLLDPNA----------------------HELSPETIEALERLREAGVKVVLVTGRSLAE 46 (204)
T ss_pred EEEeCcCCCcCCCC----------------------CcCCHHHHHHHHHHHHCCCEEEEECCCCHHH
Confidence 78999998886310 1234678899999999999999999998643
No 95
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.52 E-value=0.013 Score=64.39 Aligned_cols=99 Identities=16% Similarity=0.197 Sum_probs=62.9
Q ss_pred cCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCC-C-CCcceeecCcccCcc-hHHhhHHHHHHHHhcCC
Q 044563 170 LKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYR-G-WSSLIMRLDNEMQMD-SREYLSRRRTILQKEGF 246 (290)
Q Consensus 170 paip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~-~-~d~LiLR~~~~~~~~-~~~yKs~~R~~i~~~GY 246 (290)
.++||+++++++|+++|+++.++||.. +......|++.|+. . .+..+-..+....|+ .-.|....+ ++.-..-
T Consensus 161 ~~~pG~~elL~~Lk~~G~~l~IvSn~~---~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~-~lgv~p~ 236 (1057)
T PLN02919 161 IGFPGALELITQCKNKGLKVAVASSAD---RIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAK-ILGVPTS 236 (1057)
T ss_pred ccCccHHHHHHHHHhCCCeEEEEeCCc---HHHHHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHHHHH-HcCcCcc
Confidence 369999999999999999999999975 34455678888874 3 344433222222222 223433222 2322223
Q ss_pred eEEEEeCCCcccccCC-CCcceEEEccC
Q 044563 247 HITGLISNQMDALIGQ-SLGKRVFKLPN 273 (290)
Q Consensus 247 rIv~~iGDq~sDl~G~-~~g~r~fkLPN 273 (290)
+ ..+|||...|+... ..|-+++-+..
T Consensus 237 e-~v~IgDs~~Di~AA~~aGm~~I~v~~ 263 (1057)
T PLN02919 237 E-CVVIEDALAGVQAARAAGMRCIAVTT 263 (1057)
T ss_pred c-EEEEcCCHHHHHHHHHcCCEEEEECC
Confidence 3 45699999999765 45777777755
No 96
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=96.52 E-value=0.0096 Score=53.85 Aligned_cols=92 Identities=13% Similarity=0.156 Sum_probs=55.6
Q ss_pred CcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCc-ccCc-chHHhhHHHHHHHHhcCC
Q 044563 169 HLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDN-EMQM-DSREYLSRRRTILQKEGF 246 (290)
Q Consensus 169 apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~-~~~~-~~~~yKs~~R~~i~~~GY 246 (290)
.++.|++.++++.|+++ +++.++||-+.. +...|+..+=..++.... ...| +...|.. .+...|.
T Consensus 112 ~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~--------~~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~----a~~~~~~ 178 (238)
T PRK10748 112 IDVPQATHDTLKQLAKK-WPLVAITNGNAQ--------PELFGLGDYFEFVLRAGPHGRSKPFSDMYHL----AAEKLNV 178 (238)
T ss_pred CCCCccHHHHHHHHHcC-CCEEEEECCCch--------HHHCCcHHhhceeEecccCCcCCCcHHHHHH----HHHHcCC
Confidence 45678999999999875 999999996543 456776544223333322 1222 2222332 2223343
Q ss_pred eE--EEEeCCCc-ccccCC-CCcceEEEccC
Q 044563 247 HI--TGLISNQM-DALIGQ-SLGKRVFKLPN 273 (290)
Q Consensus 247 rI--v~~iGDq~-sDl~G~-~~g~r~fkLPN 273 (290)
.. +..|||++ .|+.|. ..|-+++-+.+
T Consensus 179 ~~~~~~~VGD~~~~Di~~A~~aG~~~i~v~~ 209 (238)
T PRK10748 179 PIGEILHVGDDLTTDVAGAIRCGMQACWINP 209 (238)
T ss_pred ChhHEEEEcCCcHHHHHHHHHCCCeEEEEcC
Confidence 32 67999995 999875 45666665543
No 97
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=96.48 E-value=0.0076 Score=54.62 Aligned_cols=100 Identities=9% Similarity=-0.032 Sum_probs=64.2
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCC--CcceeecCcccCcchHHhhHHHHHHHHhcC
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGW--SSLIMRLDNEMQMDSREYLSRRRTILQKEG 245 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~--d~LiLR~~~~~~~~~~~yKs~~R~~i~~~G 245 (290)
...+.||+.++++.|+++|+++.++||.+. ..+...|+..|..++ +.++-..+...+|+.. ......+++.|
T Consensus 97 ~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~---~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p---~~~~~a~~~l~ 170 (253)
T TIGR01422 97 YSSPIPGVIEVIAYLRARGIKIGSTTGYTR---EMMDVVAPEAALQGYRPDYNVTTDDVPAGRPAP---WMALKNAIELG 170 (253)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEECCCcH---HHHHHHHHHHHhcCCCCceEEccccCCCCCCCH---HHHHHHHHHcC
Confidence 457899999999999999999999999874 344555666665544 3333332222222221 12233344444
Q ss_pred C---eEEEEeCCCcccccCC-CCcceEEEccC
Q 044563 246 F---HITGLISNQMDALIGQ-SLGKRVFKLPN 273 (290)
Q Consensus 246 Y---rIv~~iGDq~sDl~G~-~~g~r~fkLPN 273 (290)
- .=..+|||.+.|+.+. ..|-+++-++.
T Consensus 171 ~~~~~~~l~IGDs~~Di~aA~~aGi~~i~v~~ 202 (253)
T TIGR01422 171 VYDVAACVKVGDTVPDIEEGRNAGMWTVGLIL 202 (253)
T ss_pred CCCchheEEECCcHHHHHHHHHCCCeEEEEec
Confidence 3 1256899999999876 45777777764
No 98
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=96.29 E-value=0.017 Score=54.13 Aligned_cols=101 Identities=13% Similarity=0.064 Sum_probs=58.5
Q ss_pred CcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCc-ccCcchH-HhhHHHHHHHHhcCC
Q 044563 169 HLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDN-EMQMDSR-EYLSRRRTILQKEGF 246 (290)
Q Consensus 169 apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~-~~~~~~~-~yKs~~R~~i~~~GY 246 (290)
.+++||+.+++++|+++|+++.++||.+......-.+.+...++..+-..+ -.++ ...|+.. .|. ..+...|.
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~~~~~~~~v-~~~~~~~~KP~p~~~~----~a~~~~~~ 217 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPERAQGLDVF-AGDDVPKKKPDPDIYN----LAAETLGV 217 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccccccCceEEE-eccccCCCCCCHHHHH----HHHHHhCc
Confidence 478999999999999999999999997543333222222111232221222 2221 1223222 222 22233344
Q ss_pred eE--EEEeCCCcccccCC-CCcceEEEccCC
Q 044563 247 HI--TGLISNQMDALIGQ-SLGKRVFKLPNP 274 (290)
Q Consensus 247 rI--v~~iGDq~sDl~G~-~~g~r~fkLPNP 274 (290)
.. +.+|||.+.|+.+. ..|-+++-++++
T Consensus 218 ~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g 248 (286)
T PLN02779 218 DPSRCVVVEDSVIGLQAAKAAGMRCIVTKSS 248 (286)
T ss_pred ChHHEEEEeCCHHhHHHHHHcCCEEEEEccC
Confidence 33 55799999999875 356677777654
No 99
>PRK08238 hypothetical protein; Validated
Probab=96.29 E-value=0.025 Score=57.21 Aligned_cols=84 Identities=12% Similarity=0.140 Sum_probs=51.2
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCcccCcchHHhhHHHH-HHHHhcCC
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDNEMQMDSREYLSRRR-TILQKEGF 246 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R-~~i~~~GY 246 (290)
..|..|++++++++++++|.++.++|+.++. ....-++..|+ .+..+ -.++...+.. +-|..+. +.+.++|+
T Consensus 70 ~lp~~pga~e~L~~lk~~G~~v~LaTas~~~---~a~~i~~~lGl--Fd~Vi-gsd~~~~~kg-~~K~~~l~~~l~~~~~ 142 (479)
T PRK08238 70 TLPYNEEVLDYLRAERAAGRKLVLATASDER---LAQAVAAHLGL--FDGVF-ASDGTTNLKG-AAKAAALVEAFGERGF 142 (479)
T ss_pred hCCCChhHHHHHHHHHHCCCEEEEEeCCCHH---HHHHHHHHcCC--CCEEE-eCCCccccCC-chHHHHHHHHhCccCe
Confidence 4456799999999999999999999998764 44455666675 23333 2222111110 1133322 22223333
Q ss_pred eEEEEeCCCcccccC
Q 044563 247 HITGLISNQMDALIG 261 (290)
Q Consensus 247 rIv~~iGDq~sDl~G 261 (290)
..+||..+|+..
T Consensus 143 ---~yvGDS~~Dlp~ 154 (479)
T PRK08238 143 ---DYAGNSAADLPV 154 (479)
T ss_pred ---eEecCCHHHHHH
Confidence 357999999975
No 100
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=96.28 E-value=0.0072 Score=51.41 Aligned_cols=85 Identities=13% Similarity=0.132 Sum_probs=53.6
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCc-ccCcc-hHHhhHHHHHHHHhcC
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDN-EMQMD-SREYLSRRRTILQKEG 245 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~-~~~~~-~~~yKs~~R~~i~~~G 245 (290)
..++.||+.++++.|+++|+++.++|++ ......|+..|+..+=..++-... ...++ .-.|. ..+++.|
T Consensus 86 ~~~~~~g~~~~l~~l~~~g~~i~i~S~~-----~~~~~~l~~~~l~~~f~~v~~~~~~~~~kp~~~~~~----~~~~~~~ 156 (185)
T TIGR02009 86 GAEVLPGIENFLKRLKKKGIAVGLGSSS-----KNADRILAKLGLTDYFDAIVDADEVKEGKPHPETFL----LAAELLG 156 (185)
T ss_pred CCCCCcCHHHHHHHHHHcCCeEEEEeCc-----hhHHHHHHHcChHHHCCEeeehhhCCCCCCChHHHH----HHHHHcC
Confidence 3678999999999999999999999997 224567778887543223332221 11221 11222 2233333
Q ss_pred C---eEEEEeCCCcccccCC
Q 044563 246 F---HITGLISNQMDALIGQ 262 (290)
Q Consensus 246 Y---rIv~~iGDq~sDl~G~ 262 (290)
. + +..|||...|+.+.
T Consensus 157 ~~~~~-~v~IgD~~~di~aA 175 (185)
T TIGR02009 157 VSPNE-CVVFEDALAGVQAA 175 (185)
T ss_pred CCHHH-eEEEeCcHhhHHHH
Confidence 2 3 44799999999865
No 101
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=96.27 E-value=0.024 Score=48.53 Aligned_cols=93 Identities=12% Similarity=0.130 Sum_probs=54.9
Q ss_pred cCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCC-CcceeecCcccCcchH-HhhHHHHHHHHhcCCe
Q 044563 170 LKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGW-SSLIMRLDNEMQMDSR-EYLSRRRTILQKEGFH 247 (290)
Q Consensus 170 paip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~-d~LiLR~~~~~~~~~~-~yKs~~R~~i~~~GYr 247 (290)
++.| .++++.+|++. +++.++||-+ +......|+..|+..+ +.++-..+....++.. .|... +++-|..
T Consensus 88 ~~~~-~~e~L~~L~~~-~~l~I~T~~~---~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~----~~~~~~~ 158 (188)
T PRK10725 88 EPLP-LIEVVKAWHGR-RPMAVGTGSE---SAIAEALLAHLGLRRYFDAVVAADDVQHHKPAPDTFLRC----AQLMGVQ 158 (188)
T ss_pred CCcc-HHHHHHHHHhC-CCEEEEcCCc---hHHHHHHHHhCCcHhHceEEEehhhccCCCCChHHHHHH----HHHcCCC
Confidence 4555 47899998865 8999999954 4455677888888654 4333332222233222 23322 2223333
Q ss_pred E--EEEeCCCcccccCCC-CcceEEEc
Q 044563 248 I--TGLISNQMDALIGQS-LGKRVFKL 271 (290)
Q Consensus 248 I--v~~iGDq~sDl~G~~-~g~r~fkL 271 (290)
. +..|||...|+.+.. .|-+++.+
T Consensus 159 ~~~~l~igDs~~di~aA~~aG~~~i~~ 185 (188)
T PRK10725 159 PTQCVVFEDADFGIQAARAAGMDAVDV 185 (188)
T ss_pred HHHeEEEeccHhhHHHHHHCCCEEEee
Confidence 2 446899999998753 45555543
No 102
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=96.26 E-value=0.018 Score=54.99 Aligned_cols=70 Identities=19% Similarity=0.318 Sum_probs=50.6
Q ss_pred CCcEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHH
Q 044563 129 GLDVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLI 208 (290)
Q Consensus 129 g~~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~ 208 (290)
-+..||||+||||-+...- --.--|++.+++.+|+++|+++.++|+.+ |....+-|.
T Consensus 127 ~~~~i~~D~D~TL~~~~~~--------------------v~irdp~V~EtL~eLkekGikLaIvTNg~---Re~v~~~Le 183 (303)
T PHA03398 127 IPHVIVFDLDSTLITDEEP--------------------VRIRDPFVYDSLDELKERGCVLVLWSYGN---REHVVHSLK 183 (303)
T ss_pred eccEEEEecCCCccCCCCc--------------------cccCChhHHHHHHHHHHCCCEEEEEcCCC---hHHHHHHHH
Confidence 3569999999988875210 00114789999999999999999999764 334477888
Q ss_pred hCCCCCCCcceee
Q 044563 209 SAGYRGWSSLIMR 221 (290)
Q Consensus 209 ~~Gy~~~d~LiLR 221 (290)
+.|...+-..+.-
T Consensus 184 ~lgL~~yFDvII~ 196 (303)
T PHA03398 184 ETKLEGYFDIIIC 196 (303)
T ss_pred HcCCCccccEEEE
Confidence 8998765444444
No 103
>PLN02887 hydrolase family protein
Probab=96.13 E-value=0.018 Score=59.51 Aligned_cols=45 Identities=18% Similarity=0.211 Sum_probs=35.7
Q ss_pred cEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCcc
Q 044563 131 DVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEG 198 (290)
Q Consensus 131 ~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~ 198 (290)
..|++||||||.+... .--+.+++.+++++++|++|++.|||+-.
T Consensus 309 KLIa~DLDGTLLn~d~-----------------------~Is~~t~eAI~kl~ekGi~~vIATGR~~~ 353 (580)
T PLN02887 309 SYIFCDMDGTLLNSKS-----------------------QISETNAKALKEALSRGVKVVIATGKARP 353 (580)
T ss_pred cEEEEeCCCCCCCCCC-----------------------ccCHHHHHHHHHHHHCCCeEEEEcCCCHH
Confidence 4899999998887521 11245778899999999999999999854
No 104
>PLN03017 trehalose-phosphatase
Probab=96.13 E-value=0.0096 Score=58.30 Aligned_cols=63 Identities=13% Similarity=0.178 Sum_probs=43.0
Q ss_pred HHHHHhhhCCCC-CCCcEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecC
Q 044563 116 VESYFNTLTPSY-NGLDVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSR 194 (290)
Q Consensus 116 A~~y~~~~~~~~-~g~~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSg 194 (290)
|...++++.... .++-++++|+||||.-.- -+| ..+..-+.+.+.++.|. +|+.|+++||
T Consensus 96 al~~~~~~~~~~~~k~~llflD~DGTL~Piv---------~~p---------~~a~i~~~~~~aL~~La-~~~~vaIvSG 156 (366)
T PLN03017 96 ALEMFEQIMEASRGKQIVMFLDYDGTLSPIV---------DDP---------DKAFMSSKMRRTVKKLA-KCFPTAIVTG 156 (366)
T ss_pred HHHHHHHHHHHhcCCCeEEEEecCCcCcCCc---------CCc---------ccccCCHHHHHHHHHHh-cCCcEEEEeC
Confidence 555566555432 344588899999998320 001 12245578899999999 7899999999
Q ss_pred CCc
Q 044563 195 KHE 197 (290)
Q Consensus 195 R~e 197 (290)
|+-
T Consensus 157 R~~ 159 (366)
T PLN03017 157 RCI 159 (366)
T ss_pred CCH
Confidence 974
No 105
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=96.12 E-value=0.02 Score=50.04 Aligned_cols=96 Identities=11% Similarity=0.039 Sum_probs=60.8
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCC-CcceeecCcccCcc-hHHhhHHHHHHHHhcC
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGW-SSLIMRLDNEMQMD-SREYLSRRRTILQKEG 245 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~-d~LiLR~~~~~~~~-~~~yKs~~R~~i~~~G 245 (290)
..++.|++.+++++|+++|++++++||.. +..+..-|+..|+..+ +.++--......++ .-.|+ +.+++.|
T Consensus 73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~---~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~----~~~~~~~ 145 (205)
T TIGR01454 73 EVEVFPGVPELLAELRADGVGTAIATGKS---GPRARSLLEALGLLPLFDHVIGSDEVPRPKPAPDIVR----EALRLLD 145 (205)
T ss_pred ccccCCCHHHHHHHHHHCCCeEEEEeCCc---hHHHHHHHHHcCChhheeeEEecCcCCCCCCChHHHH----HHHHHcC
Confidence 46789999999999999999999999975 3445667888888644 33332211111221 12222 3333334
Q ss_pred CeE--EEEeCCCcccccCC-CCcceEEE
Q 044563 246 FHI--TGLISNQMDALIGQ-SLGKRVFK 270 (290)
Q Consensus 246 YrI--v~~iGDq~sDl~G~-~~g~r~fk 270 (290)
... +..|||...|+.+. ..|-+++-
T Consensus 146 ~~~~~~l~igD~~~Di~aA~~~Gi~~i~ 173 (205)
T TIGR01454 146 VPPEDAVMVGDAVTDLASARAAGTATVA 173 (205)
T ss_pred CChhheEEEcCCHHHHHHHHHcCCeEEE
Confidence 322 67999999999764 34554443
No 106
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=96.09 E-value=0.012 Score=56.09 Aligned_cols=57 Identities=18% Similarity=0.188 Sum_probs=39.8
Q ss_pred cEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhC
Q 044563 131 DVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISA 210 (290)
Q Consensus 131 ~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~ 210 (290)
..|++|+||||.+... +. | +.+.+.+++|+++|+.|++.|||+...-.... ++.
T Consensus 2 KLIftDLDGTLLd~~~--------~~---~------------~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~---~~L 55 (302)
T PRK12702 2 RLVLSSLDGSLLDLEF--------NS---Y------------GAARQALAALERRSIPLVLYSLRTRAQLEHLC---RQL 55 (302)
T ss_pred cEEEEeCCCCCcCCCC--------cC---C------------HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH---HHh
Confidence 5789999998777421 11 1 23677889999999999999999865433333 344
Q ss_pred CCC
Q 044563 211 GYR 213 (290)
Q Consensus 211 Gy~ 213 (290)
|..
T Consensus 56 gl~ 58 (302)
T PRK12702 56 RLE 58 (302)
T ss_pred CCC
Confidence 553
No 107
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=96.03 E-value=0.017 Score=59.93 Aligned_cols=80 Identities=26% Similarity=0.378 Sum_probs=53.0
Q ss_pred EEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhC-
Q 044563 132 VVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISA- 210 (290)
Q Consensus 132 AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~- 210 (290)
.||-|||||+--+-- .|.+-|. .|++=.--|+.+||.++.+.|++++|+|.|.-.|...|..-|+..
T Consensus 532 IVISDIDGTITKSDv-----LGh~lp~-------iGkDWTh~GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv~ 599 (738)
T KOG2116|consen 532 IVISDIDGTITKSDV-----LGHVLPM-------IGKDWTHTGVAKLYTKIKENGYKILYLSARAIGQADSTRQYLKNVE 599 (738)
T ss_pred EEEecCCCceEhhhh-----hhhhhhh-------hcCcchhhhHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHHHHHh
Confidence 577799997665421 2332221 122223457889999999999999999999999999997666654
Q ss_pred --CCCCCC-cceeecC
Q 044563 211 --GYRGWS-SLIMRLD 223 (290)
Q Consensus 211 --Gy~~~d-~LiLR~~ 223 (290)
|+.--+ -++|.++
T Consensus 600 QdG~~LPdGPViLSPd 615 (738)
T KOG2116|consen 600 QDGKKLPDGPVILSPD 615 (738)
T ss_pred hcCccCCCCCEEeCCC
Confidence 653112 3455443
No 108
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=95.98 E-value=0.041 Score=52.88 Aligned_cols=90 Identities=18% Similarity=0.065 Sum_probs=54.8
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCC-C-cceeec-------CcccCcchHHhhHHHH
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGW-S-SLIMRL-------DNEMQMDSREYLSRRR 238 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~-d-~LiLR~-------~~~~~~~~~~yKs~~R 238 (290)
..+..|++.++++.+++.|+++.++||-.... +..-+...|+... . .|-... .++. . ....|.+.-
T Consensus 179 ~l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~---~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~i-v-~~k~K~~~L 253 (322)
T PRK11133 179 NLPLMPGLTELVLKLQALGWKVAIASGGFTYF---ADYLRDKLRLDAAVANELEIMDGKLTGNVLGDI-V-DAQYKADTL 253 (322)
T ss_pred hCCCChhHHHHHHHHHHcCCEEEEEECCcchh---HHHHHHHcCCCeEEEeEEEEECCEEEeEecCcc-C-CcccHHHHH
Confidence 56789999999999999999999999976432 3344556777421 1 111110 0100 0 012344443
Q ss_pred HHHH-hcC--CeEEEEeCCCcccccCC
Q 044563 239 TILQ-KEG--FHITGLISNQMDALIGQ 262 (290)
Q Consensus 239 ~~i~-~~G--YrIv~~iGDq~sDl~G~ 262 (290)
+++. +.| ..-+..|||..+|+...
T Consensus 254 ~~la~~lgi~~~qtIaVGDg~NDl~m~ 280 (322)
T PRK11133 254 TRLAQEYEIPLAQTVAIGDGANDLPMI 280 (322)
T ss_pred HHHHHHcCCChhhEEEEECCHHHHHHH
Confidence 3443 334 23467889999999864
No 109
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=95.97 E-value=0.023 Score=49.52 Aligned_cols=88 Identities=11% Similarity=0.194 Sum_probs=53.2
Q ss_pred cCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCc-ccCcchHHhhHHHHHHHHhcCCeE
Q 044563 170 LKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDN-EMQMDSREYLSRRRTILQKEGFHI 248 (290)
Q Consensus 170 paip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~-~~~~~~~~yKs~~R~~i~~~GYrI 248 (290)
.+.+++.++++.|+++|+++.++||++ +..+...|+..|+..+-..++-.++ ...++...|+... +++.-..-+
T Consensus 106 ~~~~~~~~~L~~l~~~g~~~~i~T~~~---~~~~~~~l~~~gl~~~f~~~~~~~~~~~KP~p~~~~~~~-~~~~~~~~~- 180 (197)
T TIGR01548 106 ETLLTPKGLLRELHRAPKGMAVVTGRP---RKDAAKFLTTHGLEILFPVQIWMEDCPPKPNPEPLILAA-KALGVEACH- 180 (197)
T ss_pred ccccCHHHHHHHHHHcCCcEEEECCCC---HHHHHHHHHHcCchhhCCEEEeecCCCCCcCHHHHHHHH-HHhCcCccc-
Confidence 344556899999999999999999986 4566777888897644333332222 1222222233222 222112223
Q ss_pred EEEeCCCcccccCC
Q 044563 249 TGLISNQMDALIGQ 262 (290)
Q Consensus 249 v~~iGDq~sDl~G~ 262 (290)
+.+|||...|+.+.
T Consensus 181 ~i~vGD~~~Di~aA 194 (197)
T TIGR01548 181 AAMVGDTVDDIITG 194 (197)
T ss_pred EEEEeCCHHHHHHH
Confidence 45899999998653
No 110
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=95.92 E-value=0.012 Score=49.61 Aligned_cols=126 Identities=9% Similarity=0.013 Sum_probs=68.2
Q ss_pred CcEEEEecccccccChhhhhhccCCC-Ccc--chHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHH
Q 044563 130 LDVVLMDIDDIFASSSKYSNLLIDRV-NVR--GYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTEL 206 (290)
Q Consensus 130 ~~AvVfDIDetLsn~~y~~~~~~G~~-~~~--~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~N 206 (290)
|..+|+|+||||-....-........ .+. ...+=...-...+.||+.+|++.|+ +|+++.++|+-... .+..-
T Consensus 2 k~~lvldld~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~---~~~~i 77 (148)
T smart00577 2 KKTLVLDLDETLVHSTHRSFKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRAS-ELFELVVFTAGLRM---YADPV 77 (148)
T ss_pred CcEEEEeCCCCeECCCCCcCCCCCccceEEEEEeCCceEEEEEEECCCHHHHHHHHH-hccEEEEEeCCcHH---HHHHH
Confidence 56899999997776532000000000 000 0000001123467899999999998 68999999997654 34445
Q ss_pred HHhCCCCC-C-CcceeecCcccCcchHHhhHHHHHHHHhcCCeEEEEeCCCcccccCCC
Q 044563 207 LISAGYRG-W-SSLIMRLDNEMQMDSREYLSRRRTILQKEGFHITGLISNQMDALIGQS 263 (290)
Q Consensus 207 L~~~Gy~~-~-d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GYrIv~~iGDq~sDl~G~~ 263 (290)
|+..|... + +.++-+.+....++. |....+ .+- ..-.=..+|||...|+....
T Consensus 78 l~~l~~~~~~f~~i~~~~d~~~~KP~--~~k~l~-~l~-~~p~~~i~i~Ds~~~~~aa~ 132 (148)
T smart00577 78 LDLLDPKKYFGYRRLFRDECVFVKGK--YVKDLS-LLG-RDLSNVIIIDDSPDSWPFHP 132 (148)
T ss_pred HHHhCcCCCEeeeEEECccccccCCe--EeecHH-HcC-CChhcEEEEECCHHHhhcCc
Confidence 66666632 2 445555443333332 221111 111 11223458999999998654
No 111
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=95.88 E-value=0.014 Score=54.24 Aligned_cols=51 Identities=14% Similarity=0.040 Sum_probs=37.9
Q ss_pred CcEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHh-CCCeEEEecCCCcc
Q 044563 130 LDVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQV-RGWPVILLSRKHEG 198 (290)
Q Consensus 130 ~~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~-~Gv~V~~iSgR~e~ 198 (290)
+-++++|+||||.+.- -+| .....-|.+.+.++.|.+ .|+.|+++|||+-.
T Consensus 14 ~~li~~D~DGTLl~~~---------~~p---------~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~ 65 (266)
T PRK10187 14 NYAWFFDLDGTLAEIK---------PHP---------DQVVVPDNILQGLQLLATANDGALALISGRSMV 65 (266)
T ss_pred CEEEEEecCCCCCCCC---------CCc---------ccccCCHHHHHHHHHHHhCCCCcEEEEeCCCHH
Confidence 3589999999988741 011 012334788899999998 79999999999854
No 112
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=95.86 E-value=0.027 Score=51.37 Aligned_cols=99 Identities=13% Similarity=0.082 Sum_probs=64.2
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCC-CcceeecCcccCcchHHhhHHHHHHHHhcCC
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGW-SSLIMRLDNEMQMDSREYLSRRRTILQKEGF 246 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~-d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GY 246 (290)
..++.||+.++++.|+++|+++.++||.+ +..+...|+..|+..+ +..+-..+....|+..+. ..+.++..|-
T Consensus 106 ~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~---~~~~~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~---~~~a~~~~~~ 179 (248)
T PLN02770 106 QLKPLNGLYKLKKWIEDRGLKRAAVTNAP---RENAELMISLLGLSDFFQAVIIGSECEHAKPHPDP---YLKALEVLKV 179 (248)
T ss_pred cCCcCccHHHHHHHHHHcCCeEEEEeCCC---HHHHHHHHHHcCChhhCcEEEecCcCCCCCCChHH---HHHHHHHhCC
Confidence 46789999999999999999999999975 4566778888898654 343333322223322211 1222333332
Q ss_pred e--EEEEeCCCcccccCC-CCcceEEEcc
Q 044563 247 H--ITGLISNQMDALIGQ-SLGKRVFKLP 272 (290)
Q Consensus 247 r--Iv~~iGDq~sDl~G~-~~g~r~fkLP 272 (290)
+ =..+|||...|+... ..|-+++-+.
T Consensus 180 ~~~~~l~vgDs~~Di~aA~~aGi~~i~v~ 208 (248)
T PLN02770 180 SKDHTFVFEDSVSGIKAGVAAGMPVVGLT 208 (248)
T ss_pred ChhHEEEEcCCHHHHHHHHHCCCEEEEEe
Confidence 2 256799999999764 3466666554
No 113
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=95.75 E-value=0.021 Score=49.68 Aligned_cols=86 Identities=15% Similarity=0.165 Sum_probs=55.1
Q ss_pred cCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCC-CcceeecCcccCcchHHhhHHHHHHHHhcCCeE
Q 044563 170 LKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGW-SSLIMRLDNEMQMDSREYLSRRRTILQKEGFHI 248 (290)
Q Consensus 170 paip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~-d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GYrI 248 (290)
.+.|++.+++++|+++|+++.++||-+. . ....|+..|...+ +.++.......+|+.. .-.+..+++.|...
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~---~-~~~~l~~~~l~~~fd~i~~s~~~~~~KP~~---~~~~~~~~~~~~~~ 177 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDS---R-LRGLLEALGLLEYFDFVVTSYEVGAEKPDP---KIFQEALERAGISP 177 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCch---h-HHHHHHHCCcHHhcceEEeecccCCCCCCH---HHHHHHHHHcCCCh
Confidence 5789999999999999999999999653 2 3566888887543 4444332222222211 12233344444332
Q ss_pred --EEEeCCCc-ccccCC
Q 044563 249 --TGLISNQM-DALIGQ 262 (290)
Q Consensus 249 --v~~iGDq~-sDl~G~ 262 (290)
+..|||.+ .|+.+.
T Consensus 178 ~~~~~IgD~~~~Di~~A 194 (203)
T TIGR02252 178 EEALHIGDSLRNDYQGA 194 (203)
T ss_pred hHEEEECCCchHHHHHH
Confidence 56899998 799764
No 114
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=95.75 E-value=0.022 Score=53.54 Aligned_cols=79 Identities=13% Similarity=0.049 Sum_probs=53.3
Q ss_pred CCCCcEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCC-CeEEEecCCCccchHHHHH
Q 044563 127 YNGLDVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRG-WPVILLSRKHEGQRNATTE 205 (290)
Q Consensus 127 ~~g~~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~G-v~V~~iSgR~e~~r~~T~~ 205 (290)
..++.+++||.||||..... + | ..+++.+.++++++.|.+.. ..|+++|||+...-+.=..
T Consensus 15 ~a~~~~~~lDyDGTl~~i~~--------~-p---------~~a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~~~ 76 (266)
T COG1877 15 NARKRLLFLDYDGTLTEIVP--------H-P---------EAAVPDDRLLSLLQDLASDPRNVVAIISGRSLAELERLFG 76 (266)
T ss_pred cccceEEEEecccccccccc--------C-c---------cccCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHhcC
Confidence 35677999999999988632 1 2 25688999999999999994 4799999998543222111
Q ss_pred HHHhCCCCCCCcceeecCc
Q 044563 206 LLISAGYRGWSSLIMRLDN 224 (290)
Q Consensus 206 NL~~~Gy~~~d~LiLR~~~ 224 (290)
+...|+-+......|..+
T Consensus 77 -v~~i~l~aehGa~~r~~~ 94 (266)
T COG1877 77 -VPGIGLIAEHGAEVRDPN 94 (266)
T ss_pred -CCCccEEEecceEEecCC
Confidence 223344344456665444
No 115
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=95.55 E-value=0.036 Score=48.25 Aligned_cols=96 Identities=14% Similarity=0.092 Sum_probs=61.0
Q ss_pred CcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCc-ccCcc-hHHhhHHHHHHHHhcCC
Q 044563 169 HLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDN-EMQMD-SREYLSRRRTILQKEGF 246 (290)
Q Consensus 169 apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~-~~~~~-~~~yKs~~R~~i~~~GY 246 (290)
.++.|++.++++.|+++|+++.++|+.. +......|+..|+..+-..+.-.++ ...++ ...|. +.+++-|.
T Consensus 84 ~~~~~g~~~~L~~l~~~g~~~~i~S~~~---~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~----~~~~~~~~ 156 (213)
T TIGR01449 84 TSVFPGVEATLGALRAKGLRLGLVTNKP---TPLARPLLELLGLAKYFSVLIGGDSLAQRKPHPDPLL----LAAERLGV 156 (213)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHHcCcHhhCcEEEecCCCCCCCCChHHHH----HHHHHcCC
Confidence 5789999999999999999999999975 4567778888887644223332222 11222 11222 23333332
Q ss_pred --eEEEEeCCCcccccCC-CCcceEEEc
Q 044563 247 --HITGLISNQMDALIGQ-SLGKRVFKL 271 (290)
Q Consensus 247 --rIv~~iGDq~sDl~G~-~~g~r~fkL 271 (290)
.=...|||..+|+... ..|-+++-+
T Consensus 157 ~~~~~~~igDs~~d~~aa~~aG~~~i~v 184 (213)
T TIGR01449 157 APQQMVYVGDSRVDIQAARAAGCPSVLL 184 (213)
T ss_pred ChhHeEEeCCCHHHHHHHHHCCCeEEEE
Confidence 2266899999999754 345555544
No 116
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=95.50 E-value=0.091 Score=47.45 Aligned_cols=89 Identities=13% Similarity=-0.018 Sum_probs=59.4
Q ss_pred CcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCc-ceeecCc-ccC-----cchHHhhHHHHHHH
Q 044563 169 HLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSS-LIMRLDN-EMQ-----MDSREYLSRRRTIL 241 (290)
Q Consensus 169 apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~-LiLR~~~-~~~-----~~~~~yKs~~R~~i 241 (290)
.+-.|++.++.+.++++|++|++|||=.. ..+..=.+..|+..+-. .+...++ ..+ .-..+.|..+-+++
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~---~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~ 152 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFT---FLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALREL 152 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChH---HHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHH
Confidence 67789999999999999999999999664 56666667778864422 2222221 111 11123466655444
Q ss_pred H-hcCCe--EEEEeCCCccccc
Q 044563 242 Q-KEGFH--ITGLISNQMDALI 260 (290)
Q Consensus 242 ~-~~GYr--Iv~~iGDq~sDl~ 260 (290)
. +.|++ =...+||-.+|++
T Consensus 153 ~~~~g~~~~~~~a~gDs~nDlp 174 (212)
T COG0560 153 AAELGIPLEETVAYGDSANDLP 174 (212)
T ss_pred HHHcCCCHHHeEEEcCchhhHH
Confidence 4 45766 5678999999996
No 117
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=95.47 E-value=0.022 Score=48.27 Aligned_cols=81 Identities=16% Similarity=0.108 Sum_probs=46.1
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCc-ccCc-chHHhhHHHHHHHHhcC
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDN-EMQM-DSREYLSRRRTILQKEG 245 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~-~~~~-~~~~yKs~~R~~i~~~G 245 (290)
..++.|++.++++ ++.++||-+ +......|+..|+..+-..++-.+. ...| +.-.|... ++..|
T Consensus 88 ~~~~~~g~~~~L~-------~~~i~Tn~~---~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~f~~~----~~~~~ 153 (175)
T TIGR01493 88 NLPPWPDSAAALA-------RVAILSNAS---HWAFDQFAQQAGLPWYFDRAFSVDTVRAYKPDPVVYELV----FDTVG 153 (175)
T ss_pred cCCCCCchHHHHH-------HHhhhhCCC---HHHHHHHHHHCCCHHHHhhhccHhhcCCCCCCHHHHHHH----HHHHC
Confidence 4557888888888 367889854 3444557788887643222332221 1222 22233322 22233
Q ss_pred C--eEEEEeCCCcccccCC
Q 044563 246 F--HITGLISNQMDALIGQ 262 (290)
Q Consensus 246 Y--rIv~~iGDq~sDl~G~ 262 (290)
. .=+.+|||...|+.|.
T Consensus 154 ~~p~~~l~vgD~~~Di~~A 172 (175)
T TIGR01493 154 LPPDRVLMVAAHQWDLIGA 172 (175)
T ss_pred CCHHHeEeEecChhhHHHH
Confidence 3 2256899999999875
No 118
>PLN02423 phosphomannomutase
Probab=95.47 E-value=0.031 Score=51.20 Aligned_cols=44 Identities=16% Similarity=0.173 Sum_probs=32.9
Q ss_pred CCcEEE-EecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCC
Q 044563 129 GLDVVL-MDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKH 196 (290)
Q Consensus 129 g~~AvV-fDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~ 196 (290)
++.+++ |||||||.+... .--|.+.+.+++|+++ +.+++.|||.
T Consensus 5 ~~~~i~~~D~DGTLl~~~~-----------------------~i~~~~~~ai~~l~~~-i~fviaTGR~ 49 (245)
T PLN02423 5 KPGVIALFDVDGTLTAPRK-----------------------EATPEMLEFMKELRKV-VTVGVVGGSD 49 (245)
T ss_pred ccceEEEEeccCCCcCCCC-----------------------cCCHHHHHHHHHHHhC-CEEEEECCcC
Confidence 455666 999998887521 1124577889999977 9999999994
No 119
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=95.44 E-value=0.25 Score=45.63 Aligned_cols=110 Identities=17% Similarity=0.138 Sum_probs=72.4
Q ss_pred hcCcCcHHHHHHHHHH--HhCCCeEEEecCCCccchHHHHHHHHhCCCCC-----------CC---cceeecCcccCcch
Q 044563 167 AKHLKHMFTLKLFMKL--QVRGWPVILLSRKHEGQRNATTELLISAGYRG-----------WS---SLIMRLDNEMQMDS 230 (290)
Q Consensus 167 ~~apaip~~l~l~~~l--~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~-----------~d---~LiLR~~~~~~~~~ 230 (290)
...|..|++.+|++.+ .+.|+.+++||.= .--....+|+++|+.. |+ .|.+++-..+.++.
T Consensus 68 ~~ip~~pgm~~~l~~l~~~~~~~~~~IiSDa---Ns~fI~~iL~~~gl~~~f~~I~TNpa~~~~~G~l~v~pyh~h~C~~ 144 (234)
T PF06888_consen 68 RSIPIDPGMKELLRFLAKNQRGFDLIIISDA---NSFFIETILEHHGLRDCFSEIFTNPACFDADGRLRVRPYHSHGCSL 144 (234)
T ss_pred HcCCCCccHHHHHHHHHhcCCCceEEEEeCC---cHhHHHHHHHhCCCccccceEEeCCceecCCceEEEeCccCCCCCc
Confidence 3678899999999999 5689999999984 4456778899999752 21 34455433333332
Q ss_pred ---HHhhHHHHHHHHhc----C--CeEEEEeCCCcccccCCC-CcceEEEccCCccccc
Q 044563 231 ---REYLSRRRTILQKE----G--FHITGLISNQMDALIGQS-LGKRVFKLPNPLYYSF 279 (290)
Q Consensus 231 ---~~yKs~~R~~i~~~----G--YrIv~~iGDq~sDl~G~~-~g~r~fkLPNPmY~~w 279 (290)
--=|...-+++.++ | |+=|.+|||--+||=-.- .+.+=+.+|=--|..|
T Consensus 145 C~~NmCK~~il~~~~~~~~~~g~~~~rviYiGDG~nD~Cp~~~L~~~D~v~~R~~~~l~ 203 (234)
T PF06888_consen 145 CPPNMCKGKILERLLQEQAQRGVPYDRVIYIGDGRNDFCPALRLRPRDVVFPRKGYPLH 203 (234)
T ss_pred CCCccchHHHHHHHHHHHhhcCCCcceEEEECCCCCCcCcccccCCCCEEecCCCChHH
Confidence 12455554444443 5 788889999999996532 3344566665444443
No 120
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=95.37 E-value=0.049 Score=45.89 Aligned_cols=95 Identities=17% Similarity=0.117 Sum_probs=55.0
Q ss_pred CcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCC-CcceeecCcccCc-chHHhhHHHHHHHHhcCC
Q 044563 169 HLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGW-SSLIMRLDNEMQM-DSREYLSRRRTILQKEGF 246 (290)
Q Consensus 169 apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~-d~LiLR~~~~~~~-~~~~yKs~~R~~i~~~GY 246 (290)
.++.|++.++++.|+++|+++.++||-+... ..-+.+.|+..+ +.++-..+...+| +.-.|+... +++--. -
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~----~~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~-~~~~~~-~ 157 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH----AVLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLAL-KKLGLK-P 157 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH----HHHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHH-HHcCCC-c
Confidence 5788999999999999999999999987543 222333676432 3333321111222 222343222 222111 2
Q ss_pred eEEEEeCCCcccccCC-CCcceEE
Q 044563 247 HITGLISNQMDALIGQ-SLGKRVF 269 (290)
Q Consensus 247 rIv~~iGDq~sDl~G~-~~g~r~f 269 (290)
.=+..|||...|+.+. ..|-+++
T Consensus 158 ~~~~~vgD~~~di~aA~~~G~~~i 181 (183)
T TIGR01509 158 EECLFVDDSPAGIEAAKAAGMHTV 181 (183)
T ss_pred ceEEEEcCCHHHHHHHHHcCCEEE
Confidence 2355789999998754 2454443
No 121
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=95.37 E-value=0.045 Score=47.81 Aligned_cols=99 Identities=20% Similarity=0.236 Sum_probs=60.1
Q ss_pred CcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhC-CCCC-CCcceeecCcccCcc-hHHhhHHHHHHHHhcC
Q 044563 169 HLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISA-GYRG-WSSLIMRLDNEMQMD-SREYLSRRRTILQKEG 245 (290)
Q Consensus 169 apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~-Gy~~-~d~LiLR~~~~~~~~-~~~yKs~~R~~i~~~G 245 (290)
.++.|+++++++.++++|++++++||-+.... ...+... |+.. .+.++--.+-..+|+ ...|+. .++..|
T Consensus 83 ~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~---~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~----~~~~~~ 155 (199)
T PRK09456 83 VALRPEVIAIMHKLREQGHRVVVLSNTNRLHT---TFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQH----VLQAEG 155 (199)
T ss_pred hccCHHHHHHHHHHHhCCCcEEEEcCCchhhH---HHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHH----HHHHcC
Confidence 35789999999999999999999999764432 2233322 3322 234443322222332 223432 222233
Q ss_pred Ce--EEEEeCCCcccccCC-CCcceEEEccCC
Q 044563 246 FH--ITGLISNQMDALIGQ-SLGKRVFKLPNP 274 (290)
Q Consensus 246 Yr--Iv~~iGDq~sDl~G~-~~g~r~fkLPNP 274 (290)
-. =...|||...|+.+. ..|-+++.+++|
T Consensus 156 ~~p~~~l~vgD~~~di~aA~~aG~~~i~~~~~ 187 (199)
T PRK09456 156 FSAADAVFFDDNADNIEAANALGITSILVTDK 187 (199)
T ss_pred CChhHeEEeCCCHHHHHHHHHcCCEEEEecCC
Confidence 22 256899999998764 457778777765
No 122
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=95.33 E-value=0.046 Score=50.12 Aligned_cols=98 Identities=10% Similarity=0.016 Sum_probs=60.1
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCC--CcceeecCcccCcc-hHHhhHHHHHHHHhc
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGW--SSLIMRLDNEMQMD-SREYLSRRRTILQKE 244 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~--d~LiLR~~~~~~~~-~~~yKs~~R~~i~~~ 244 (290)
...+.||+.++++.|+++|+++.++||.+.. .+..-|+..|..++ +.++-..+....|+ .-.|. ..+++.
T Consensus 99 ~~~~~pg~~elL~~L~~~g~~l~I~T~~~~~---~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~----~a~~~l 171 (267)
T PRK13478 99 YATPIPGVLEVIAALRARGIKIGSTTGYTRE---MMDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMAL----KNAIEL 171 (267)
T ss_pred cCCCCCCHHHHHHHHHHCCCEEEEEcCCcHH---HHHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHHH----HHHHHc
Confidence 3578999999999999999999999997754 44445555443332 33333322222222 22232 333334
Q ss_pred CC---eEEEEeCCCcccccCC-CCcceEEEcc
Q 044563 245 GF---HITGLISNQMDALIGQ-SLGKRVFKLP 272 (290)
Q Consensus 245 GY---rIv~~iGDq~sDl~G~-~~g~r~fkLP 272 (290)
|- .=..+|||..+|+.+. ..|-+++-+.
T Consensus 172 ~~~~~~e~l~IGDs~~Di~aA~~aG~~~i~v~ 203 (267)
T PRK13478 172 GVYDVAACVKVDDTVPGIEEGLNAGMWTVGVI 203 (267)
T ss_pred CCCCCcceEEEcCcHHHHHHHHHCCCEEEEEc
Confidence 43 2367899999999875 3465555554
No 123
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=95.31 E-value=0.036 Score=58.30 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=36.7
Q ss_pred CCcEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccc
Q 044563 129 GLDVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQ 199 (290)
Q Consensus 129 g~~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~ 199 (290)
.++.|++|+||||.+... + ..+.+.+.++.|+++|+.|++.|||+...
T Consensus 415 ~~KLIfsDLDGTLLd~d~--------~---------------i~~~t~eAL~~L~ekGI~~VIATGRs~~~ 462 (694)
T PRK14502 415 FKKIVYTDLDGTLLNPLT--------Y---------------SYSTALDALRLLKDKELPLVFCSAKTMGE 462 (694)
T ss_pred eeeEEEEECcCCCcCCCC--------c---------------cCHHHHHHHHHHHHcCCeEEEEeCCCHHH
Confidence 456899999998887521 1 01346778899999999999999998653
No 124
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=95.30 E-value=0.046 Score=47.88 Aligned_cols=100 Identities=13% Similarity=0.204 Sum_probs=58.4
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCC-CCCcceeecCcccCc-chHHhhHHHHHHHHhcC
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYR-GWSSLIMRLDNEMQM-DSREYLSRRRTILQKEG 245 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~-~~d~LiLR~~~~~~~-~~~~yKs~~R~~i~~~G 245 (290)
..++.|+++++++.|+++|+++.++||-...... +...+...|+. -++.++--.+...+| +...|+.. +.+.|
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~-~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~----~~~~g 166 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHS-AEEALLPGDIMALFDAVVESCLEGLRKPDPRIYQLM----LERLG 166 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCCCccch-hhhHhhhhhhHhhCCEEEEeeecCCCCCCHHHHHHH----HHHcC
Confidence 3568999999999999999999999996543321 22334334432 234444322111122 22234322 22233
Q ss_pred ---CeEEEEeCCCcccccCC-CCcceEEEccC
Q 044563 246 ---FHITGLISNQMDALIGQ-SLGKRVFKLPN 273 (290)
Q Consensus 246 ---YrIv~~iGDq~sDl~G~-~~g~r~fkLPN 273 (290)
-+++ +|||...|+.+. ..|-+++.+.+
T Consensus 167 ~~~~~~l-~i~D~~~di~aA~~aG~~~i~v~~ 197 (211)
T TIGR02247 167 VAPEECV-FLDDLGSNLKPAAALGITTIKVSD 197 (211)
T ss_pred CCHHHeE-EEcCCHHHHHHHHHcCCEEEEECC
Confidence 2344 569999999875 35777776655
No 125
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=95.27 E-value=0.035 Score=53.00 Aligned_cols=104 Identities=13% Similarity=0.147 Sum_probs=72.3
Q ss_pred CCCcEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHH
Q 044563 128 NGLDVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELL 207 (290)
Q Consensus 128 ~g~~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL 207 (290)
++-|-++||.||+|-.. ..+|||+.+.++.|+++|-.|+|+||-+-..|..=.+-.
T Consensus 20 ~~~DtfifDcDGVlW~g------------------------~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~ 75 (306)
T KOG2882|consen 20 DSFDTFIFDCDGVLWLG------------------------EKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKF 75 (306)
T ss_pred hhcCEEEEcCCcceeec------------------------CCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHH
Confidence 34579999999987652 257999999999999999999999999988888888889
Q ss_pred HhCCCCCC--Ccc---------eeecCcccCcch-HHhhHHHHHHHHhcCCeEEEEeCCC
Q 044563 208 ISAGYRGW--SSL---------IMRLDNEMQMDS-REYLSRRRTILQKEGFHITGLISNQ 255 (290)
Q Consensus 208 ~~~Gy~~~--d~L---------iLR~~~~~~~~~-~~yKs~~R~~i~~~GYrIv~~iGDq 255 (290)
++.||... +.+ +||......+.. +---+..|++|++.|++-.+.=.|-
T Consensus 76 ~~lG~~~v~e~~i~ssa~~~a~ylk~~~~~~k~Vyvig~~gi~~eL~~aG~~~~g~~~~~ 135 (306)
T KOG2882|consen 76 AKLGFNSVKEENIFSSAYAIADYLKKRKPFGKKVYVIGEEGIREELDEAGFEYFGGGPDG 135 (306)
T ss_pred HHhCccccCcccccChHHHHHHHHHHhCcCCCeEEEecchhhhHHHHHcCceeecCCCCc
Confidence 99999732 111 122111110111 1112457888999997766654444
No 126
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=95.26 E-value=0.019 Score=52.08 Aligned_cols=46 Identities=7% Similarity=0.094 Sum_probs=35.6
Q ss_pred EEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCc
Q 044563 132 VVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHE 197 (290)
Q Consensus 132 AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e 197 (290)
.|+.|+||||.+.-. . ..+..|...+++++++++|+.+++.|||+-
T Consensus 3 li~tDlDGTLl~~~~--------~------------~~~~~~~~~~~i~~~~~~gi~fv~aTGR~~ 48 (249)
T TIGR01485 3 LLVSDLDNTLVDHTD--------G------------DNQALLRLNALLEDHRGEDSLLVYSTGRSP 48 (249)
T ss_pred EEEEcCCCcCcCCCC--------C------------ChHHHHHHHHHHHHhhccCceEEEEcCCCH
Confidence 688999998887310 0 113457788899999999999999999984
No 127
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=95.18 E-value=0.039 Score=47.48 Aligned_cols=83 Identities=12% Similarity=0.053 Sum_probs=55.0
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCcccCcchHHhh--HHHHHHHHhcC
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDNEMQMDSREYL--SRRRTILQKEG 245 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~~~~~~~~~yK--s~~R~~i~~~G 245 (290)
.+++.|++.++++.|++.|+++.++||-. +..+..-.+..|+.. ..+.-.. . +++ .-| ...-+++..++
T Consensus 125 ~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~---~~~a~~~~~~lgi~~--~~v~a~~-~-~kP--~~k~~~~~i~~l~~~~ 195 (215)
T PF00702_consen 125 RDPLRPGAKEALQELKEAGIKVAILTGDN---ESTASAIAKQLGIFD--SIVFARV-I-GKP--EPKIFLRIIKELQVKP 195 (215)
T ss_dssp EEEBHTTHHHHHHHHHHTTEEEEEEESSE---HHHHHHHHHHTTSCS--EEEEESH-E-TTT--HHHHHHHHHHHHTCTG
T ss_pred cCcchhhhhhhhhhhhccCcceeeeeccc---ccccccccccccccc--ccccccc-c-ccc--cchhHHHHHHHHhcCC
Confidence 45788999999999999999999999864 456666677888842 1121111 0 111 123 33344454344
Q ss_pred CeEEEEeCCCccccc
Q 044563 246 FHITGLISNQMDALI 260 (290)
Q Consensus 246 YrIv~~iGDq~sDl~ 260 (290)
. .++++||...|..
T Consensus 196 ~-~v~~vGDg~nD~~ 209 (215)
T PF00702_consen 196 G-EVAMVGDGVNDAP 209 (215)
T ss_dssp G-GEEEEESSGGHHH
T ss_pred C-EEEEEccCHHHHH
Confidence 4 7889999999975
No 128
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=95.16 E-value=0.088 Score=44.35 Aligned_cols=90 Identities=13% Similarity=-0.001 Sum_probs=56.4
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCC--cce------eecCccc-CcchHHhhHHHH
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWS--SLI------MRLDNEM-QMDSREYLSRRR 238 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d--~Li------LR~~~~~-~~~~~~yKs~~R 238 (290)
..+..|++.++++.++++|++++++|+.. +..+...+...|+..+- .+. +.++-.. ....-.-|...-
T Consensus 71 ~~~~~~g~~~~l~~l~~~g~~~~ivS~~~---~~~i~~~~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l 147 (177)
T TIGR01488 71 QVALRPGARELISWLKERGIDTVIVSGGF---DFFVEPVAEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVL 147 (177)
T ss_pred cCCcCcCHHHHHHHHHHCCCEEEEECCCc---HHHHHHHHHHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHHH
Confidence 45567999999999999999999999975 45677778888886431 111 1110000 111123455444
Q ss_pred HHHHhc-C--CeEEEEeCCCccccc
Q 044563 239 TILQKE-G--FHITGLISNQMDALI 260 (290)
Q Consensus 239 ~~i~~~-G--YrIv~~iGDq~sDl~ 260 (290)
+++.++ | +.-+..+||..+|+.
T Consensus 148 ~~~~~~~~~~~~~~~~iGDs~~D~~ 172 (177)
T TIGR01488 148 KELLEESKITLKKIIAVGDSVNDLP 172 (177)
T ss_pred HHHHHHhCCCHHHEEEEeCCHHHHH
Confidence 444332 2 444678999999975
No 129
>PLN02151 trehalose-phosphatase
Probab=95.08 E-value=0.047 Score=53.34 Aligned_cols=63 Identities=13% Similarity=0.170 Sum_probs=42.5
Q ss_pred HHHHHhhhCCC-CCCCcEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecC
Q 044563 116 VESYFNTLTPS-YNGLDVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSR 194 (290)
Q Consensus 116 A~~y~~~~~~~-~~g~~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSg 194 (290)
|...++++... ..++-++++|+||||...- -+| ..+.+-|++++.++.|. .++.|++|||
T Consensus 83 a~~~~~~~~~~~~~~~~ll~lDyDGTL~PIv---------~~P---------~~A~~~~~~~~aL~~La-~~~~vaIvSG 143 (354)
T PLN02151 83 ALNMFEEILHKSEGKQIVMFLDYDGTLSPIV---------DDP---------DRAFMSKKMRNTVRKLA-KCFPTAIVSG 143 (354)
T ss_pred HHHHHHHHHHhhcCCceEEEEecCccCCCCC---------CCc---------ccccCCHHHHHHHHHHh-cCCCEEEEEC
Confidence 33344444332 2345699999999998531 112 13456788999999999 4679999999
Q ss_pred CCc
Q 044563 195 KHE 197 (290)
Q Consensus 195 R~e 197 (290)
|+-
T Consensus 144 R~~ 146 (354)
T PLN02151 144 RCR 146 (354)
T ss_pred CCH
Confidence 973
No 130
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=94.97 E-value=0.22 Score=43.86 Aligned_cols=106 Identities=11% Similarity=0.112 Sum_probs=58.8
Q ss_pred CCCCcEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCe--EEEecCCCccch---H
Q 044563 127 YNGLDVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWP--VILLSRKHEGQR---N 201 (290)
Q Consensus 127 ~~g~~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~--V~~iSgR~e~~r---~ 201 (290)
..|-.++|||.|.||..- + +...-|...+.++++++.+.. |.++||-..... .
T Consensus 38 ~~Gik~li~DkDNTL~~~-~---------------------~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~ 95 (168)
T PF09419_consen 38 KKGIKALIFDKDNTLTPP-Y---------------------EDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDG 95 (168)
T ss_pred hcCceEEEEcCCCCCCCC-C---------------------cCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccH
Confidence 356679999999987642 1 112334566777888888875 999999753221 2
Q ss_pred HHHHHH-HhCCCCCCCcceeecCcccCcchHHhhHHHHHHHHhc----CCeEEEEeCCCcc-cccCCC
Q 044563 202 ATTELL-ISAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKE----GFHITGLISNQMD-ALIGQS 263 (290)
Q Consensus 202 ~T~~NL-~~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~----GYrIv~~iGDq~s-Dl~G~~ 263 (290)
.-++.+ ++.|.+ -+.-+.... ++ ++ +..+.+... ...=+++||||+- |..++.
T Consensus 96 ~~a~~~~~~lgIp---vl~h~~kKP-~~----~~-~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN 154 (168)
T PF09419_consen 96 ERAEALEKALGIP---VLRHRAKKP-GC----FR-EILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGN 154 (168)
T ss_pred HHHHHHHHhhCCc---EEEeCCCCC-cc----HH-HHHHHHhhccCCCCchhEEEEcchHHHHHHHhh
Confidence 223333 344665 122221111 11 11 222333222 2445789999974 777654
No 131
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=94.96 E-value=0.094 Score=49.80 Aligned_cols=113 Identities=13% Similarity=0.083 Sum_probs=66.5
Q ss_pred CcEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHh
Q 044563 130 LDVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLIS 209 (290)
Q Consensus 130 ~~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~ 209 (290)
++++|+|+|+||-..- .|.-... --.-.++.|++.++++.|+++|+++.++|+.++ ..+.+-|+.
T Consensus 3 ~k~~v~DlDnTlw~gv------~~e~g~~------~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~---~~a~~~l~~ 67 (320)
T TIGR01686 3 LKVLVLDLDNTLWGGV------LGEDGID------NLNLSPLHKTLQEKIKTLKKQGFLLALASKNDE---DDAKKVFER 67 (320)
T ss_pred eEEEEEcCCCCCCCCE------EccCCcc------ccccCccHHHHHHHHHHHHhCCCEEEEEcCCCH---HHHHHHHHh
Confidence 4699999999886421 1110000 001124578999999999999999999999864 456666776
Q ss_pred ----CCCCCCCcceeecCcccCcchHHhhHHHHHHHHhcCCeEEEEeCCCcccccCC
Q 044563 210 ----AGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGFHITGLISNQMDALIGQ 262 (290)
Q Consensus 210 ----~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GYrIv~~iGDq~sDl~G~ 262 (290)
.|...+=..+ +. +.+ ++...++...+ ++ .-+..=+..|||+..|+.+.
T Consensus 68 ~~~~~~~~~~f~~~-~~-~~~-pk~~~i~~~~~-~l-~i~~~~~vfidD~~~d~~~~ 119 (320)
T TIGR01686 68 RKDFILQAEDFDAR-SI-NWG-PKSESLRKIAK-KL-NLGTDSFLFIDDNPAERANV 119 (320)
T ss_pred CccccCcHHHeeEE-EE-ecC-chHHHHHHHHH-Hh-CCCcCcEEEECCCHHHHHHH
Confidence 4543211111 11 111 11222332222 12 23456678999999999875
No 132
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=94.89 E-value=0.084 Score=53.80 Aligned_cols=80 Identities=10% Similarity=0.089 Sum_probs=60.0
Q ss_pred cCcCcHHHHHHHHHHHhCCC-eEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCcccCcchHHhhHHHHHHHHhcCC
Q 044563 168 KHLKHMFTLKLFMKLQVRGW-PVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGF 246 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv-~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GY 246 (290)
.+++.|++.+.+++|+++|+ ++.++||.+ +..+.+-+++.|...+-.-.+ .+-|...-++++++|
T Consensus 360 ~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~---~~~a~~i~~~lgi~~~f~~~~----------p~~K~~~i~~l~~~~- 425 (536)
T TIGR01512 360 SDEPRPDAAEAIAELKALGIEKVVMLTGDR---RAVAERVARELGIDEVHAELL----------PEDKLEIVKELREKY- 425 (536)
T ss_pred eccchHHHHHHHHHHHHcCCCcEEEEcCCC---HHHHHHHHHHcCChhhhhccC----------cHHHHHHHHHHHhcC-
Confidence 56889999999999999999 999999975 467778888889853211110 123555556676665
Q ss_pred eEEEEeCCCcccccC
Q 044563 247 HITGLISNQMDALIG 261 (290)
Q Consensus 247 rIv~~iGDq~sDl~G 261 (290)
+.++++||..+|...
T Consensus 426 ~~v~~vGDg~nD~~a 440 (536)
T TIGR01512 426 GPVAMVGDGINDAPA 440 (536)
T ss_pred CEEEEEeCCHHHHHH
Confidence 677899999999875
No 133
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=94.79 E-value=0.021 Score=49.32 Aligned_cols=108 Identities=6% Similarity=0.112 Sum_probs=57.1
Q ss_pred EEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCc-HHHHHHHHHHHhCCCeEEEecCCCccch----------
Q 044563 132 VVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKH-MFTLKLFMKLQVRGWPVILLSRKHEGQR---------- 200 (290)
Q Consensus 132 AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apai-p~~l~l~~~l~~~Gv~V~~iSgR~e~~r---------- 200 (290)
...||+||||-..+.... + .-+++.| . -+ |++.+.++++++.|++|+++||-..-.+
T Consensus 2 ia~fD~DgTLi~~~s~~~-f--~~~~~D~---~------~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~ 69 (159)
T PF08645_consen 2 IAFFDLDGTLIKTKSGKK-F--PKDPDDW---K------FFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENF 69 (159)
T ss_dssp EEEE-SCTTTEE-STSTT-S---SSTCGG---E------EC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHH
T ss_pred EEEEeCCCCccCCCCCCc-C--cCCHHHh---h------hcchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHH
Confidence 567999998877643110 0 0134444 2 12 2488888899999999999998743222
Q ss_pred -HHHHHHHHhCCCCCCCcceeec-CcccCcchHHhhHHHHHHHHhcCCeE--------EEEeCCCccc
Q 044563 201 -NATTELLISAGYRGWSSLIMRL-DNEMQMDSREYLSRRRTILQKEGFHI--------TGLISNQMDA 258 (290)
Q Consensus 201 -~~T~~NL~~~Gy~~~d~LiLR~-~~~~~~~~~~yKs~~R~~i~~~GYrI--------v~~iGDq~sD 258 (290)
.-...-|+..|.+- .++.-. .+.-|++ +.+.-..+. +.|.. -.+|||..++
T Consensus 70 ~~ki~~il~~l~ip~--~~~~a~~~d~~RKP----~~GM~~~~~-~~~~~~~~id~~~Sf~VGDaagr 130 (159)
T PF08645_consen 70 HEKIENILKELGIPI--QVYAAPHKDPCRKP----NPGMWEFAL-KDYNDGVEIDLANSFYVGDAAGR 130 (159)
T ss_dssp HHHHHHHHHHCTS-E--EEEECGCSSTTSTT----SSHHHHHHC-CCTSTT--S-CCC-EEEESSCHC
T ss_pred HHHHHHHHHHcCCce--EEEecCCCCCCCCC----chhHHHHHH-HhccccccccccceEEEeccCCC
Confidence 33344556778872 222221 1223333 124444444 23432 3688998555
No 134
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=94.78 E-value=0.063 Score=48.85 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=36.8
Q ss_pred CCcEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhC-CCeEEEecCCC
Q 044563 129 GLDVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVR-GWPVILLSRKH 196 (290)
Q Consensus 129 g~~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~-Gv~V~~iSgR~ 196 (290)
++.+++||+||||.... -+| ..+.+-|++++.++.|.+. +..|+++|||+
T Consensus 2 ~~~~l~lD~DGTL~~~~---------~~p---------~~~~~~~~~~~~L~~L~~~~~~~v~ivSGR~ 52 (244)
T TIGR00685 2 RKRAFFFDYDGTLSEIV---------PDP---------DAAVVSDRLLTILQKLAARPHNAIWIISGRK 52 (244)
T ss_pred CcEEEEEecCccccCCc---------CCC---------cccCCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 35689999999888631 112 1235568899999999877 45788999996
No 135
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=94.58 E-value=0.064 Score=46.24 Aligned_cols=127 Identities=14% Similarity=0.107 Sum_probs=67.3
Q ss_pred CCCCcEEEEecccccccChhhhhhc----c--CCCCc------cchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecC
Q 044563 127 YNGLDVVLMDIDDIFASSSKYSNLL----I--DRVNV------RGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSR 194 (290)
Q Consensus 127 ~~g~~AvVfDIDetLsn~~y~~~~~----~--G~~~~------~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSg 194 (290)
.++|..+|+|+||||-++....... . ...+. ..|.-=...-....-||+.+|++.+.+. +++++.|+
T Consensus 3 ~~~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~-yel~I~T~ 81 (156)
T TIGR02250 3 REKKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKL-YEMHVYTM 81 (156)
T ss_pred cCCceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhh-cEEEEEeC
Confidence 3577899999999887763311000 0 00000 0000000011234578999999999955 99999999
Q ss_pred CCccchHHHHHHHHhCC-CCCC-CcceeecCcccCcchHHhhHHHHHHHHhcCCeEEEEeCCCcccccCC
Q 044563 195 KHEGQRNATTELLISAG-YRGW-SSLIMRLDNEMQMDSREYLSRRRTILQKEGFHITGLISNQMDALIGQ 262 (290)
Q Consensus 195 R~e~~r~~T~~NL~~~G-y~~~-d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GYrIv~~iGDq~sDl~G~ 262 (290)
-++.....-++.|--.+ | . +.++-|.... ....|.-. .+-...-+-+..++|+..-....
T Consensus 82 ~~~~yA~~vl~~ldp~~~~--F~~ri~~rd~~~----~~~~KdL~--~i~~~d~~~vvivDd~~~~~~~~ 143 (156)
T TIGR02250 82 GTRAYAQAIAKLIDPDGKY--FGDRIISRDESG----SPHTKSLL--RLFPADESMVVIIDDREDVWPWH 143 (156)
T ss_pred CcHHHHHHHHHHhCcCCCe--eccEEEEeccCC----CCccccHH--HHcCCCcccEEEEeCCHHHhhcC
Confidence 88766555556554443 2 2 2344454321 11234321 12223455566777776554443
No 136
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=94.54 E-value=0.22 Score=43.07 Aligned_cols=104 Identities=13% Similarity=0.011 Sum_probs=62.3
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCC-C-cceeecCc-ccCc-----chHHhhHH-HH
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGW-S-SLIMRLDN-EMQM-----DSREYLSR-RR 238 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~-d-~LiLR~~~-~~~~-----~~~~yKs~-~R 238 (290)
.....|++.++++.++++|++|+++|+-++. .....++..|+..+ . .+..-.++ ..++ ..-.-|.. .+
T Consensus 85 ~~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~---~v~~~~~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~ 161 (202)
T TIGR01490 85 ESILYPEARDLIRWHKAEGHTIVLVSASLTI---LVKPLARILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALA 161 (202)
T ss_pred HHhccHHHHHHHHHHHHCCCEEEEEeCCcHH---HHHHHHHHcCCcceEecceEEcCCCEEeCCccCCCCCChHHHHHHH
Confidence 3468999999999999999999999998754 33344556677532 1 12221110 0000 00112333 23
Q ss_pred HHHHhcCCe--EEEEeCCCcccccCC-CCcceEEEccCC
Q 044563 239 TILQKEGFH--ITGLISNQMDALIGQ-SLGKRVFKLPNP 274 (290)
Q Consensus 239 ~~i~~~GYr--Iv~~iGDq~sDl~G~-~~g~r~fkLPNP 274 (290)
+.+.+.|+. .+..+||..+|+.-. ..|..+.+-|+|
T Consensus 162 ~~~~~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~v~~~~ 200 (202)
T TIGR01490 162 ELLAEEQIDLKDSYAYGDSISDLPLLSLVGHPYVVNPDK 200 (202)
T ss_pred HHHHHcCCCHHHcEeeeCCcccHHHHHhCCCcEEeCCCC
Confidence 333444543 456789999999753 346667777775
No 137
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=94.52 E-value=0.077 Score=47.62 Aligned_cols=42 Identities=7% Similarity=0.065 Sum_probs=29.1
Q ss_pred EEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCcc
Q 044563 132 VVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEG 198 (290)
Q Consensus 132 AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~ 198 (290)
.|++|+||||.+.... + ++.-+.++ ++++|+.++++|||+-.
T Consensus 1 li~~DlDgTLl~~~~~------------~------------~~~~~~~~-~~~~gi~~viaTGR~~~ 42 (236)
T TIGR02471 1 LIITDLDNTLLGDDEG------------L------------ASFVELLR-GSGDAVGFGIATGRSVE 42 (236)
T ss_pred CeEEeccccccCCHHH------------H------------HHHHHHHH-hcCCCceEEEEeCCCHH
Confidence 3789999988874210 1 11114555 68999999999999854
No 138
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=94.37 E-value=0.19 Score=53.04 Aligned_cols=79 Identities=15% Similarity=0.140 Sum_probs=58.4
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCcccCcchHHhhHHHHHHHHhcCCe
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGFH 247 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GYr 247 (290)
++|+-|++.+.++.+++.|+++++|||... ....+--++.|+. +.+-|- .-+-|...=++++++|+
T Consensus 444 ~D~~Rp~a~eaI~~l~~~Gi~v~miTGD~~---~ta~~iA~~lGI~---~v~a~~-------~PedK~~~v~~lq~~g~- 509 (675)
T TIGR01497 444 KDIVKGGIKERFAQLRKMGIKTIMITGDNR---LTAAAIAAEAGVD---DFIAEA-------TPEDKIALIRQEQAEGK- 509 (675)
T ss_pred cccchhHHHHHHHHHHHCCCEEEEEcCCCH---HHHHHHHHHcCCC---EEEcCC-------CHHHHHHHHHHHHHcCC-
Confidence 568999999999999999999999999643 3333444566874 333332 12357777677777765
Q ss_pred EEEEeCCCccccc
Q 044563 248 ITGLISNQMDALI 260 (290)
Q Consensus 248 Iv~~iGDq~sDl~ 260 (290)
+++++||-.+|..
T Consensus 510 ~VamvGDG~NDap 522 (675)
T TIGR01497 510 LVAMTGDGTNDAP 522 (675)
T ss_pred eEEEECCCcchHH
Confidence 7999999999985
No 139
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=94.16 E-value=0.26 Score=53.36 Aligned_cols=89 Identities=12% Similarity=0.115 Sum_probs=59.9
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCc-----------------ccCcch
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDN-----------------EMQMDS 230 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~-----------------~~~~~~ 230 (290)
.+|+-|++.+.++.++++|++|+.+||-+. ..+.+-.++.|......-.+-++. --....
T Consensus 526 ~Dp~r~~~~~~i~~l~~~Gi~v~miTGD~~---~tA~~ia~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~ 602 (884)
T TIGR01522 526 NDPPRPGVKEAVTTLITGGVRIIMITGDSQ---ETAVSIARRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVFARAS 602 (884)
T ss_pred cCcchhHHHHHHHHHHHCCCeEEEECCCCH---HHHHHHHHHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEEEECC
Confidence 568999999999999999999999999653 344445567787532211110000 000012
Q ss_pred HHhhHHHHHHHHhcCCeEEEEeCCCccccc
Q 044563 231 REYLSRRRTILQKEGFHITGLISNQMDALI 260 (290)
Q Consensus 231 ~~yKs~~R~~i~~~GYrIv~~iGDq~sDl~ 260 (290)
.+-|...=+.++++| .+++++||-.+|..
T Consensus 603 P~~K~~iv~~lq~~g-~~v~mvGDGvND~p 631 (884)
T TIGR01522 603 PEHKMKIVKALQKRG-DVVAMTGDGVNDAP 631 (884)
T ss_pred HHHHHHHHHHHHHCC-CEEEEECCCcccHH
Confidence 345766667787787 57889999999986
No 140
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=93.95 E-value=0.31 Score=43.43 Aligned_cols=124 Identities=13% Similarity=0.160 Sum_probs=70.8
Q ss_pred CcEEEEecccccccChh-hhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccc---------
Q 044563 130 LDVVLMDIDDIFASSSK-YSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQ--------- 199 (290)
Q Consensus 130 ~~AvVfDIDetLsn~~y-~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~--------- 199 (290)
++++.+|-||||---+- |. ++ +++| ..+|++++....+++.|++++.+||-+.--
T Consensus 5 ~k~lflDRDGtin~d~~~yv------~~---~~~~------~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f 69 (181)
T COG0241 5 QKALFLDRDGTINIDKGDYV------DS---LDDF------QFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADF 69 (181)
T ss_pred CcEEEEcCCCceecCCCccc------Cc---HHHh------ccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHH
Confidence 57999999997765432 21 22 3333 357889999999999999999999965311
Q ss_pred ---hHHHHHHHHhCCCCCCCcceeecC-cc----cCcc-hHHhhHHHHHHHHhcCCeEEEEeCCCcccccCCC-CcceEE
Q 044563 200 ---RNATTELLISAGYRGWSSLIMRLD-NE----MQMD-SREYLSRRRTILQKEGFHITGLISNQMDALIGQS-LGKRVF 269 (290)
Q Consensus 200 ---r~~T~~NL~~~Gy~~~d~LiLR~~-~~----~~~~-~~~yKs~~R~~i~~~GYrIv~~iGDq~sDl~G~~-~g~r~f 269 (290)
-+.=.+-|++.|.. .+..+.-+. .+ -++. .--+.+..++.. -.-...-+|||..+|+..+. .|.+.+
T Consensus 70 ~~~~~~m~~~l~~~gv~-id~i~~Cph~p~~~c~cRKP~~gm~~~~~~~~~--iD~~~s~~VGD~~~Dlq~a~n~gi~~~ 146 (181)
T COG0241 70 DKLHNKMLKILASQGVK-IDGILYCPHHPEDNCDCRKPKPGMLLSALKEYN--IDLSRSYVVGDRLTDLQAAENAGIKGV 146 (181)
T ss_pred HHHHHHHHHHHHHcCCc-cceEEECCCCCCCCCcccCCChHHHHHHHHHhC--CCccceEEecCcHHHHHHHHHCCCCce
Confidence 12344567788852 333332221 11 1221 111222222211 11245578999999997542 343344
Q ss_pred Ec
Q 044563 270 KL 271 (290)
Q Consensus 270 kL 271 (290)
.+
T Consensus 147 ~~ 148 (181)
T COG0241 147 LV 148 (181)
T ss_pred EE
Confidence 43
No 141
>PLN02580 trehalose-phosphatase
Probab=93.93 E-value=0.11 Score=51.36 Aligned_cols=49 Identities=10% Similarity=0.126 Sum_probs=38.2
Q ss_pred CCcEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCC
Q 044563 129 GLDVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKH 196 (290)
Q Consensus 129 g~~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~ 196 (290)
++-++.||.||||+-.- -+| ..+.+-|++.+.++.|.+. ..|.+||||+
T Consensus 118 k~~~LfLDyDGTLaPIv---------~~P---------d~A~~s~~~~~aL~~La~~-~~VAIVSGR~ 166 (384)
T PLN02580 118 KKIALFLDYDGTLSPIV---------DDP---------DRALMSDAMRSAVKNVAKY-FPTAIISGRS 166 (384)
T ss_pred CCeEEEEecCCccCCCC---------CCc---------ccccCCHHHHHHHHHHhhC-CCEEEEeCCC
Confidence 45589999999998641 123 2456678999999999998 5899999997
No 142
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=93.93 E-value=0.21 Score=51.02 Aligned_cols=81 Identities=15% Similarity=0.151 Sum_probs=59.5
Q ss_pred cCcCcHHHHHHHHHHHhCC-CeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCcccCcchHHhhHHHHHHHHhcCC
Q 044563 168 KHLKHMFTLKLFMKLQVRG-WPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGF 246 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~G-v~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GY 246 (290)
.+++.|++.+++++|+++| +++.++||.+ +..+.+-+++.|... .+-+-. .+-|...-+++..+|.
T Consensus 382 ~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~---~~~a~~i~~~lgi~~---~f~~~~-------p~~K~~~v~~l~~~~~ 448 (556)
T TIGR01525 382 RDQLRPEAKEAIAALKRAGGIKLVMLTGDN---RSAAEAVAAELGIDE---VHAELL-------PEDKLAIVKELQEEGG 448 (556)
T ss_pred cccchHhHHHHHHHHHHcCCCeEEEEeCCC---HHHHHHHHHHhCCCe---eeccCC-------HHHHHHHHHHHHHcCC
Confidence 5789999999999999999 9999999976 456667778888852 222211 1235455556665665
Q ss_pred eEEEEeCCCcccccCC
Q 044563 247 HITGLISNQMDALIGQ 262 (290)
Q Consensus 247 rIv~~iGDq~sDl~G~ 262 (290)
.++++||...|....
T Consensus 449 -~v~~vGDg~nD~~al 463 (556)
T TIGR01525 449 -VVAMVGDGINDAPAL 463 (556)
T ss_pred -EEEEEECChhHHHHH
Confidence 778999999998753
No 143
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=93.88 E-value=0.25 Score=53.74 Aligned_cols=88 Identities=13% Similarity=0.054 Sum_probs=60.7
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHH-hCCCCCCCcceeecCcc-----------------cCcc
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLI-SAGYRGWSSLIMRLDNE-----------------MQMD 229 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~-~~Gy~~~d~LiLR~~~~-----------------~~~~ 229 (290)
.+|+-|++.+.++.+++.|++|+.|||... .|..+.. +.|...-+..++-+++- -..-
T Consensus 577 ~Dplr~~~~~aI~~l~~aGI~v~miTGD~~----~tA~~iA~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~Vfar~ 652 (941)
T TIGR01517 577 KDPLRPGVREAVQECQRAGITVRMVTGDNI----DTAKAIARNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRVLARS 652 (941)
T ss_pred cCCCchhHHHHHHHHHHCCCEEEEECCCCh----HHHHHHHHHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeEEEEC
Confidence 579999999999999999999999999763 4445544 45764222222211110 0111
Q ss_pred hHHhhHHHHHHHHhcCCeEEEEeCCCccccc
Q 044563 230 SREYLSRRRTILQKEGFHITGLISNQMDALI 260 (290)
Q Consensus 230 ~~~yKs~~R~~i~~~GYrIv~~iGDq~sDl~ 260 (290)
..+-|...=+.++++|+ +++.+||-.+|-.
T Consensus 653 sPe~K~~iV~~lq~~g~-vVam~GDGvNDap 682 (941)
T TIGR01517 653 SPLDKQLLVLMLKDMGE-VVAVTGDGTNDAP 682 (941)
T ss_pred CHHHHHHHHHHHHHCCC-EEEEECCCCchHH
Confidence 23467777778888888 7899999999985
No 144
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=93.86 E-value=0.18 Score=53.19 Aligned_cols=78 Identities=17% Similarity=0.172 Sum_probs=58.7
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHH-hCCCCCCCcceeecCcccCcchHHhhHHHHHHHHhcCC
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLI-SAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGF 246 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~-~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GY 246 (290)
.+|+-|++.+.++.+++.|++++.|||-.. .|.+... +.|.. +.+=|- .-+-|.+.=++++++|
T Consensus 439 ~Dp~R~~a~e~I~~Lr~~GI~vvMiTGDn~----~TA~aIA~elGI~---~v~A~~-------~PedK~~iV~~lQ~~G- 503 (673)
T PRK14010 439 KDVIKDGLVERFRELREMGIETVMCTGDNE----LTAATIAKEAGVD---RFVAEC-------KPEDKINVIREEQAKG- 503 (673)
T ss_pred ecCCcHHHHHHHHHHHHCCCeEEEECCCCH----HHHHHHHHHcCCc---eEEcCC-------CHHHHHHHHHHHHhCC-
Confidence 679999999999999999999999999653 4555554 55874 333332 1245777777788776
Q ss_pred eEEEEeCCCccccc
Q 044563 247 HITGLISNQMDALI 260 (290)
Q Consensus 247 rIv~~iGDq~sDl~ 260 (290)
++|+++||-.+|-.
T Consensus 504 ~~VaMtGDGvNDAP 517 (673)
T PRK14010 504 HIVAMTGDGTNDAP 517 (673)
T ss_pred CEEEEECCChhhHH
Confidence 68999999999964
No 145
>PLN02811 hydrolase
Probab=93.71 E-value=0.12 Score=45.96 Aligned_cols=101 Identities=11% Similarity=0.115 Sum_probs=59.9
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecC--c-ccCcc-hHHhhHHHHHHHHh
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLD--N-EMQMD-SREYLSRRRTILQK 243 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~--~-~~~~~-~~~yKs~~R~~i~~ 243 (290)
..+..||+.++++.|+++|+++.++||-... ..+...++..|+..+-..+.-.+ + ...|. .-.|. ..+++
T Consensus 76 ~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~--~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~----~a~~~ 149 (220)
T PLN02811 76 TSDLMPGAERLVRHLHAKGIPIAIATGSHKR--HFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFL----AAARR 149 (220)
T ss_pred hCCCCccHHHHHHHHHHCCCcEEEEeCCchh--hHHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHH----HHHHH
Confidence 4567899999999999999999999996543 23333333335433322333222 1 11222 12232 22332
Q ss_pred cC---C--eEEEEeCCCcccccCC-CCcceEEEccCC
Q 044563 244 EG---F--HITGLISNQMDALIGQ-SLGKRVFKLPNP 274 (290)
Q Consensus 244 ~G---Y--rIv~~iGDq~sDl~G~-~~g~r~fkLPNP 274 (290)
.| . .=+.+|||...|+... ..|-+++-++++
T Consensus 150 ~~~~~~~~~~~v~IgDs~~di~aA~~aG~~~i~v~~~ 186 (220)
T PLN02811 150 FEDGPVDPGKVLVFEDAPSGVEAAKNAGMSVVMVPDP 186 (220)
T ss_pred hCCCCCCccceEEEeccHhhHHHHHHCCCeEEEEeCC
Confidence 22 2 3377999999999865 346677766554
No 146
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=93.49 E-value=0.27 Score=52.28 Aligned_cols=88 Identities=15% Similarity=0.085 Sum_probs=57.1
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHH-HhCCCCCC----Ccce-------e---------ecCccc
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELL-ISAGYRGW----SSLI-------M---------RLDNEM 226 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL-~~~Gy~~~----d~Li-------L---------R~~~~~ 226 (290)
.+|+-|++.+..+.+++.|++|+.|||.... |.+.. ++.|...- +.+. | +..+--
T Consensus 440 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~----tA~~IA~~lGI~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vf 515 (755)
T TIGR01647 440 FDPPRHDTKETIERARHLGVEVKMVTGDHLA----IAKETARRLGLGTNIYTADVLLKGDNRDDLPSGELGEMVEDADGF 515 (755)
T ss_pred cCCChhhHHHHHHHHHHCCCeEEEECCCCHH----HHHHHHHHcCCCCCCcCHHHhcCCcchhhCCHHHHHHHHHhCCEE
Confidence 5689999999999999999999999997643 33333 35677420 1110 0 000000
Q ss_pred CcchHHhhHHHHHHHHhcCCeEEEEeCCCccccc
Q 044563 227 QMDSREYLSRRRTILQKEGFHITGLISNQMDALI 260 (290)
Q Consensus 227 ~~~~~~yKs~~R~~i~~~GYrIv~~iGDq~sDl~ 260 (290)
..-..+-|...=++++++|+ +|+++||-.+|-.
T Consensus 516 Ar~~Pe~K~~iV~~lq~~G~-~VamvGDGvNDap 548 (755)
T TIGR01647 516 AEVFPEHKYEIVEILQKRGH-LVGMTGDGVNDAP 548 (755)
T ss_pred EecCHHHHHHHHHHHHhcCC-EEEEEcCCcccHH
Confidence 11123456666677887875 7999999999964
No 147
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=93.40 E-value=0.3 Score=51.92 Aligned_cols=79 Identities=14% Similarity=0.150 Sum_probs=57.7
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCcccCcchHHhhHHHHHHHHhcCCe
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGFH 247 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GYr 247 (290)
.++.-|.+.+..+.|+++|++++++||=. +....+-=++.|...+-.=++ | +.|.+.=++++++| +
T Consensus 535 ~D~~R~~a~~aI~~L~~~Gi~~~mLTGDn---~~~A~~iA~~lGId~v~Aell-P---------edK~~~V~~l~~~g-~ 600 (713)
T COG2217 535 ADELRPDAKEAIAALKALGIKVVMLTGDN---RRTAEAIAKELGIDEVRAELL-P---------EDKAEIVRELQAEG-R 600 (713)
T ss_pred eCCCChhHHHHHHHHHHCCCeEEEEcCCC---HHHHHHHHHHcChHhheccCC-c---------HHHHHHHHHHHhcC-C
Confidence 57888999999999999999999999944 333444445678754321111 1 24777777888665 8
Q ss_pred EEEEeCCCccccc
Q 044563 248 ITGLISNQMDALI 260 (290)
Q Consensus 248 Iv~~iGDq~sDl~ 260 (290)
.++++||=.+|=+
T Consensus 601 ~VamVGDGINDAP 613 (713)
T COG2217 601 KVAMVGDGINDAP 613 (713)
T ss_pred EEEEEeCCchhHH
Confidence 8899999999865
No 148
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=93.37 E-value=0.35 Score=41.04 Aligned_cols=84 Identities=11% Similarity=0.025 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCccee--ecCccc----CcchHH--hhHHHHHHH---H
Q 044563 174 FTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIM--RLDNEM----QMDSRE--YLSRRRTIL---Q 242 (290)
Q Consensus 174 ~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiL--R~~~~~----~~~~~~--yKs~~R~~i---~ 242 (290)
++.++++.+++.|++|++||+-+ +..+..-++..|++...-+-- ...+.. +..... -|...-+++ .
T Consensus 93 ~~~e~i~~~~~~~~~v~IvS~~~---~~~i~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~~~~ 169 (192)
T PF12710_consen 93 DAMELIRELKDNGIKVVIVSGSP---DEIIEPIAERLGIDDDNVIGNELFDNGGGIFTGRITGSNCGGKAEALKELYIRD 169 (192)
T ss_dssp THHHHHHHHHHTTSEEEEEEEEE---HHHHHHHHHHTTSSEGGEEEEEEECTTCCEEEEEEEEEEESHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCEEEEECCCc---HHHHHHHHHHcCCCceEEEEEeeeecccceeeeeECCCCCCcHHHHHHHHHHHh
Confidence 34499999999999999999964 566666677889874321111 111100 000000 255555555 1
Q ss_pred --hcCCeEEEEeCCCccccc
Q 044563 243 --KEGFHITGLISNQMDALI 260 (290)
Q Consensus 243 --~~GYrIv~~iGDq~sDl~ 260 (290)
..++..+..+||..+|+.
T Consensus 170 ~~~~~~~~~~~iGDs~~D~~ 189 (192)
T PF12710_consen 170 EEDIDPDRVIAIGDSINDLP 189 (192)
T ss_dssp HHTHTCCEEEEEESSGGGHH
T ss_pred hcCCCCCeEEEEECCHHHHH
Confidence 356899999999999974
No 149
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=93.17 E-value=0.52 Score=51.78 Aligned_cols=89 Identities=11% Similarity=0.025 Sum_probs=57.6
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCC------------------------cceeecC
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWS------------------------SLIMRLD 223 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d------------------------~LiLR~~ 223 (290)
.+|+-|++.+.++.++++|++|+++|||.... ..+-.++.|.-.-+ .+++-+.
T Consensus 566 ~Dplr~~v~~aI~~l~~~Gi~v~~~TGd~~~t---a~~ia~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G~ 642 (997)
T TIGR01106 566 IDPPRAAVPDAVGKCRSAGIKVIMVTGDHPIT---AKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGS 642 (997)
T ss_pred cCCChHHHHHHHHHHHHCCCeEEEECCCCHHH---HHHHHHHcCCCCCCccchhhhhhhccccccccccccccceEEEhH
Confidence 57999999999999999999999999998532 22233344542100 0122111
Q ss_pred ccc-------------------CcchHHhhHHHHHHHHhcCCeEEEEeCCCccccc
Q 044563 224 NEM-------------------QMDSREYLSRRRTILQKEGFHITGLISNQMDALI 260 (290)
Q Consensus 224 ~~~-------------------~~~~~~yKs~~R~~i~~~GYrIv~~iGDq~sDl~ 260 (290)
.-. .....+-|...=+.+++.|| +++.+||-.+|..
T Consensus 643 ~l~~l~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq~~g~-vv~~~GDG~ND~p 697 (997)
T TIGR01106 643 DLKDMTSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQRQGA-IVAVTGDGVNDSP 697 (997)
T ss_pred HhhhCCHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHHHCCC-EEEEECCCcccHH
Confidence 100 01122356666677788888 8899999999975
No 150
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=93.15 E-value=0.41 Score=50.59 Aligned_cols=78 Identities=14% Similarity=0.160 Sum_probs=57.1
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHH-HhCCCCCCCcceeecCcccCcchHHhhHHHHHHHHhcCC
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELL-ISAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGF 246 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL-~~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GY 246 (290)
++|+-|++.+.++++++.|++++.|||=. ..|.+.. ++.|.. +.+=|- .-+-|-+.=++++++|
T Consensus 443 ~D~~R~~~~eai~~Lr~~GI~vvMiTGDn----~~TA~aIA~elGId---~v~A~~-------~PedK~~iV~~lQ~~G- 507 (679)
T PRK01122 443 KDIVKPGIKERFAELRKMGIKTVMITGDN----PLTAAAIAAEAGVD---DFLAEA-------TPEDKLALIRQEQAEG- 507 (679)
T ss_pred eccCchhHHHHHHHHHHCCCeEEEECCCC----HHHHHHHHHHcCCc---EEEccC-------CHHHHHHHHHHHHHcC-
Confidence 56888999999999999999999999944 3444444 456884 333232 1245766667777766
Q ss_pred eEEEEeCCCccccc
Q 044563 247 HITGLISNQMDALI 260 (290)
Q Consensus 247 rIv~~iGDq~sDl~ 260 (290)
++|+++||-.+|-.
T Consensus 508 ~~VaMtGDGvNDAP 521 (679)
T PRK01122 508 RLVAMTGDGTNDAP 521 (679)
T ss_pred CeEEEECCCcchHH
Confidence 58999999999964
No 151
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=93.09 E-value=0.29 Score=44.93 Aligned_cols=53 Identities=17% Similarity=0.047 Sum_probs=42.7
Q ss_pred CccchHHHHHh---------hcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHH
Q 044563 156 NVRGYIECIEE---------AKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLI 208 (290)
Q Consensus 156 ~~~~w~~Wv~~---------~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~ 208 (290)
+|.+|.+...+ .....+||+.+|++.|+.+|+.+-++|++++...+.-+.++.
T Consensus 69 dp~s~ee~~~e~~~~~~~~~~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~ 130 (222)
T KOG2914|consen 69 DPVSREEFNKEEEEILDRLFMNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHE 130 (222)
T ss_pred CCCCHHHHHHHHHHHHHHhccccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhh
Confidence 55566666532 467789999999999999999999999998887777666666
No 152
>PF10307 DUF2410: Hypothetical protein (DUF2410); InterPro: IPR018812 This entry represents a family of proteins conserved in fungi whose function is not known. There are two characteristic sequence motifs, GGWW and TGR.
Probab=92.98 E-value=0.4 Score=43.30 Aligned_cols=97 Identities=13% Similarity=0.163 Sum_probs=66.8
Q ss_pred ccchHHHHHhhcCcCcHHHHHHHHH-HHhCCCeEEEecCCCccc-hHHHHHHHHhCCCCCCCcceeecCcccCcchHHhh
Q 044563 157 VRGYIECIEEAKHLKHMFTLKLFMK-LQVRGWPVILLSRKHEGQ-RNATTELLISAGYRGWSSLIMRLDNEMQMDSREYL 234 (290)
Q Consensus 157 ~~~w~~Wv~~~~apaip~~l~l~~~-l~~~Gv~V~~iSgR~e~~-r~~T~~NL~~~Gy~~~d~LiLR~~~~~~~~~~~yK 234 (290)
+..|..|-++ .++++++. +++...=.++||||+|.. .+.-.+-|...|. ..+.++||+.+....++..||
T Consensus 48 ~~~w~gwWNe-------~Iv~la~~S~~~~dtltVLLTGR~e~~F~~lI~~ml~s~~L-~Fd~v~LKp~~~~~~sTm~fK 119 (197)
T PF10307_consen 48 KRAWEGWWNE-------NIVELARLSMQDPDTLTVLLTGRRESKFSSLIERMLASKGL-EFDAVCLKPENQRFSSTMDFK 119 (197)
T ss_pred cccccchhhH-------HHHHHHHHhhcCCCeeEEEEeCCCchhHHHHHHHHHhcCCC-CccEEEeCcccccCccccHHH
Confidence 3446666644 47788776 556666778999999865 4555555777788 489999998866677889999
Q ss_pred HHHHHHHHhc--CCeEEEEeCCCcccccC
Q 044563 235 SRRRTILQKE--GFHITGLISNQMDALIG 261 (290)
Q Consensus 235 s~~R~~i~~~--GYrIv~~iGDq~sDl~G 261 (290)
...-..+... .-.=|-+-.|..+=+.|
T Consensus 120 ~~~l~~ll~~Y~~~~eI~IYeDR~~hvk~ 148 (197)
T PF10307_consen 120 QAFLEDLLHTYKNAEEIRIYEDRPKHVKG 148 (197)
T ss_pred HHHHHHHHHhcCCCCEEEEEcCCHHHHHH
Confidence 9998888742 21223455666554433
No 153
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=92.60 E-value=0.59 Score=48.02 Aligned_cols=80 Identities=10% Similarity=0.133 Sum_probs=57.6
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCcccCcchHHhhHHHHHHHHhcCCe
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGFH 247 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GYr 247 (290)
.++..|++.+++++|+++|+++.++||.++ ....+-++..|+. ++..-. .+-|.+.-++++++| +
T Consensus 403 ~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~---~~a~~ia~~lgi~-----~~~~~~------p~~K~~~v~~l~~~~-~ 467 (562)
T TIGR01511 403 EDQLRPEAKEVIQALKRRGIEPVMLTGDNR---KTAKAVAKELGIN-----VRAEVL------PDDKAALIKELQEKG-R 467 (562)
T ss_pred cccccHHHHHHHHHHHHcCCeEEEEcCCCH---HHHHHHHHHcCCc-----EEccCC------hHHHHHHHHHHHHcC-C
Confidence 567899999999999999999999999764 4555666778884 111100 124555556666665 4
Q ss_pred EEEEeCCCcccccCC
Q 044563 248 ITGLISNQMDALIGQ 262 (290)
Q Consensus 248 Iv~~iGDq~sDl~G~ 262 (290)
.++++||-.+|....
T Consensus 468 ~v~~VGDg~nD~~al 482 (562)
T TIGR01511 468 VVAMVGDGINDAPAL 482 (562)
T ss_pred EEEEEeCCCccHHHH
Confidence 577999999998753
No 154
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=92.39 E-value=0.73 Score=49.91 Aligned_cols=86 Identities=16% Similarity=0.127 Sum_probs=58.3
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHH-HHhCCCCCCCcceeecCcc-----------------cCcc
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTEL-LISAGYRGWSSLIMRLDNE-----------------MQMD 229 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~N-L~~~Gy~~~d~LiLR~~~~-----------------~~~~ 229 (290)
.+|+-|++.+.++.+++.|++|+.|||-.. .|.+. =++.|... +.. +-+.+- -..-
T Consensus 513 ~Dp~R~~~~~aI~~l~~aGI~vvmiTGD~~----~tA~aIA~~lGI~~-~~v-~~g~~l~~~~~~el~~~~~~~~vfAr~ 586 (867)
T TIGR01524 513 LDPPKESTKEAIAALFKNGINVKVLTGDNE----IVTARICQEVGIDA-NDF-LLGADIEELSDEELARELRKYHIFARL 586 (867)
T ss_pred eCCCchhHHHHHHHHHHCCCEEEEEcCCCH----HHHHHHHHHcCCCC-CCe-eecHhhhhCCHHHHHHHhhhCeEEEEC
Confidence 679999999999999999999999999543 34444 34568742 111 111000 0011
Q ss_pred hHHhhHHHHHHHHhcCCeEEEEeCCCccccc
Q 044563 230 SREYLSRRRTILQKEGFHITGLISNQMDALI 260 (290)
Q Consensus 230 ~~~yKs~~R~~i~~~GYrIv~~iGDq~sDl~ 260 (290)
..+-|...=+.++++|+ +|+++||-.+|..
T Consensus 587 ~Pe~K~~iV~~lq~~G~-vVam~GDGvNDap 616 (867)
T TIGR01524 587 TPMQKSRIIGLLKKAGH-TVGFLGDGINDAP 616 (867)
T ss_pred CHHHHHHHHHHHHhCCC-EEEEECCCcccHH
Confidence 23457777778888876 7899999999975
No 155
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=92.37 E-value=0.21 Score=52.73 Aligned_cols=51 Identities=14% Similarity=0.172 Sum_probs=38.6
Q ss_pred CCcEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhC-CCeEEEecCCCc
Q 044563 129 GLDVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVR-GWPVILLSRKHE 197 (290)
Q Consensus 129 g~~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~-Gv~V~~iSgR~e 197 (290)
.+..++||+||||...- ..+ ..+.+-+.+++.++.|.+. |+.|+++|||+-
T Consensus 491 ~~rLi~~D~DGTL~~~~---------~~~---------~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~ 542 (726)
T PRK14501 491 SRRLLLLDYDGTLVPFA---------PDP---------ELAVPDKELRDLLRRLAADPNTDVAIISGRDR 542 (726)
T ss_pred cceEEEEecCccccCCC---------CCc---------ccCCCCHHHHHHHHHHHcCCCCeEEEEeCCCH
Confidence 45699999999888641 011 1234557899999999994 999999999974
No 156
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=92.20 E-value=0.72 Score=50.22 Aligned_cols=86 Identities=14% Similarity=0.091 Sum_probs=57.0
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHH-HhCCCCCCCcceeecC-----------------cccCcc
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELL-ISAGYRGWSSLIMRLD-----------------NEMQMD 229 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL-~~~Gy~~~d~LiLR~~-----------------~~~~~~ 229 (290)
.+|+-|++.+.++.+++.|++|+.|||=.. .|.+.. ++.|..+ +. ++-+. .--..-
T Consensus 548 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~----~tA~aIA~~lGI~~-~~-vi~G~el~~~~~~el~~~v~~~~VfAr~ 621 (903)
T PRK15122 548 LDPPKESAAPAIAALRENGVAVKVLTGDNP----IVTAKICREVGLEP-GE-PLLGTEIEAMDDAALAREVEERTVFAKL 621 (903)
T ss_pred cCccHHHHHHHHHHHHHCCCeEEEECCCCH----HHHHHHHHHcCCCC-CC-ccchHhhhhCCHHHHHHHhhhCCEEEEe
Confidence 579999999999999999999999999542 333333 4557741 11 11000 000111
Q ss_pred hHHhhHHHHHHHHhcCCeEEEEeCCCccccc
Q 044563 230 SREYLSRRRTILQKEGFHITGLISNQMDALI 260 (290)
Q Consensus 230 ~~~yKs~~R~~i~~~GYrIv~~iGDq~sDl~ 260 (290)
..+-|...=+.++++|+ +|+++||-.+|-.
T Consensus 622 sPe~K~~iV~~Lq~~G~-vVamtGDGvNDaP 651 (903)
T PRK15122 622 TPLQKSRVLKALQANGH-TVGFLGDGINDAP 651 (903)
T ss_pred CHHHHHHHHHHHHhCCC-EEEEECCCchhHH
Confidence 23457777778887765 7999999999964
No 157
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=91.93 E-value=0.45 Score=42.16 Aligned_cols=92 Identities=8% Similarity=-0.089 Sum_probs=54.3
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCC-CCC---------CcceeecCcccCc----chHHh
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGY-RGW---------SSLIMRLDNEMQM----DSREY 233 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy-~~~---------d~LiLR~~~~~~~----~~~~y 233 (290)
..+..||+.++++.++++|++++++|+..+. .....|+..+. ... +.+.++.+..... .--.-
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~---~i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~ 144 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDF---FVYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCC 144 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHH---HHHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCC
Confidence 5789999999999999999999999998643 34444444432 111 1111111110000 00012
Q ss_pred hHHHHHHHHhcCCeEEEEeCCCcccccCCC
Q 044563 234 LSRRRTILQKEGFHITGLISNQMDALIGQS 263 (290)
Q Consensus 234 Ks~~R~~i~~~GYrIv~~iGDq~sDl~G~~ 263 (290)
|...-+++.....++ ..|||..+|+....
T Consensus 145 K~~~l~~~~~~~~~~-i~iGDg~~D~~~a~ 173 (214)
T TIGR03333 145 KPSLIRKLSEPNDYH-IVIGDSVTDVEAAK 173 (214)
T ss_pred HHHHHHHHhhcCCcE-EEEeCCHHHHHHHH
Confidence 444444444455666 57899999998653
No 158
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=91.45 E-value=0.26 Score=42.40 Aligned_cols=84 Identities=13% Similarity=0.074 Sum_probs=52.9
Q ss_pred CcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCC-CCCCCcceeecCcccCcchHHhhHHHHHHHHhcCCe--
Q 044563 171 KHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAG-YRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGFH-- 247 (290)
Q Consensus 171 aip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~G-y~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GYr-- 247 (290)
.-||+.+|++.+.+. ++|++.|.-++..-..-++.|.-.+ + .+..+-|......+.. -.| .|..-|..
T Consensus 43 ~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~ldp~~~~--f~~~l~r~~~~~~~~~-~~K-----~L~~l~~~~~ 113 (162)
T TIGR02251 43 KRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDILDRGGKV--ISRRLYRESCVFTNGK-YVK-----DLSLVGKDLS 113 (162)
T ss_pred ECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHHCcCCCE--EeEEEEccccEEeCCC-EEe-----EchhcCCChh
Confidence 468999999999988 9999999987766566666665433 2 2345555433221111 122 23333322
Q ss_pred EEEEeCCCcccccCCC
Q 044563 248 ITGLISNQMDALIGQS 263 (290)
Q Consensus 248 Iv~~iGDq~sDl~G~~ 263 (290)
=+.+|||...|+.+..
T Consensus 114 ~vIiVDD~~~~~~~~~ 129 (162)
T TIGR02251 114 KVIIIDNSPYSYSLQP 129 (162)
T ss_pred hEEEEeCChhhhccCc
Confidence 2568999999998764
No 159
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=91.35 E-value=0.2 Score=45.12 Aligned_cols=48 Identities=15% Similarity=0.099 Sum_probs=28.6
Q ss_pred EEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCC-eEEEecCCCccc
Q 044563 134 LMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGW-PVILLSRKHEGQ 199 (290)
Q Consensus 134 VfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv-~V~~iSgR~e~~ 199 (290)
.||.||||...- -+| ..+.+.|+++++++.|.+..- .|++||||+-..
T Consensus 1 ~lDyDGTL~p~~---------~~p---------~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~ 49 (235)
T PF02358_consen 1 FLDYDGTLAPIV---------DDP---------DAAVPPPELRELLRALAADPNNTVAIVSGRSLDD 49 (235)
T ss_dssp EEE-TTTSS------------S-G---------GG----HHHHHHHHHHHHHSE--EEEE-SS-HHH
T ss_pred CcccCCccCCCC---------CCc---------cccCCCHHHHHHHHHHhccCCCEEEEEEeCCHHH
Confidence 489999998641 112 256778999999999998855 899999998543
No 160
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=91.25 E-value=0.79 Score=48.76 Aligned_cols=78 Identities=10% Similarity=0.049 Sum_probs=57.4
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCcccCcchHHhhHHHHHHHHhcCCe
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGFH 247 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GYr 247 (290)
.++..|++.+.++.|+++|++++++||.. +..+.+-.+..|+..+.. ...+-|...=++++++ .
T Consensus 566 ~d~~r~~a~~~i~~L~~~gi~~~llTGd~---~~~a~~ia~~lgi~~~~~-----------~~p~~K~~~v~~l~~~--~ 629 (741)
T PRK11033 566 QDTLRADARQAISELKALGIKGVMLTGDN---PRAAAAIAGELGIDFRAG-----------LLPEDKVKAVTELNQH--A 629 (741)
T ss_pred ecCCchhHHHHHHHHHHCCCEEEEEcCCC---HHHHHHHHHHcCCCeecC-----------CCHHHHHHHHHHHhcC--C
Confidence 46889999999999999999999999964 556777788889852111 0112455555566543 3
Q ss_pred EEEEeCCCcccccC
Q 044563 248 ITGLISNQMDALIG 261 (290)
Q Consensus 248 Iv~~iGDq~sDl~G 261 (290)
.++++||-.+|..-
T Consensus 630 ~v~mvGDgiNDapA 643 (741)
T PRK11033 630 PLAMVGDGINDAPA 643 (741)
T ss_pred CEEEEECCHHhHHH
Confidence 68999999999753
No 161
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=91.17 E-value=1.2 Score=48.47 Aligned_cols=89 Identities=11% Similarity=0.047 Sum_probs=57.2
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCc----ceeecCcc-----------------c
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSS----LIMRLDNE-----------------M 226 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~----LiLR~~~~-----------------~ 226 (290)
.+|+-|++.+.++.+++.|++|+++||.+. ..+.+-.++.|...-+. ..+-++.- -
T Consensus 535 ~Dplr~~v~e~I~~l~~aGI~v~miTGD~~---~tA~~ia~~~gi~~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~~~v~ 611 (917)
T TIGR01116 535 LDPPRPEVADAIEKCRTAGIRVIMITGDNK---ETAEAICRRIGIFSPDEDVTFKSFTGREFDEMGPAKQRAACRSAVLF 611 (917)
T ss_pred eCCCchhHHHHHHHHHHCCCEEEEecCCCH---HHHHHHHHHcCCCCCCccccceeeeHHHHhhCCHHHHHHhhhcCeEE
Confidence 678999999999999999999999999753 33444555667632110 11110000 0
Q ss_pred CcchHHhhHHHHHHHHhcCCeEEEEeCCCccccc
Q 044563 227 QMDSREYLSRRRTILQKEGFHITGLISNQMDALI 260 (290)
Q Consensus 227 ~~~~~~yKs~~R~~i~~~GYrIv~~iGDq~sDl~ 260 (290)
.....+-|...=+.+++.|+ +++.+||-.+|..
T Consensus 612 ar~~P~~K~~iV~~lq~~g~-~va~iGDG~ND~~ 644 (917)
T TIGR01116 612 SRVEPSHKSELVELLQEQGE-IVAMTGDGVNDAP 644 (917)
T ss_pred EecCHHHHHHHHHHHHhcCC-eEEEecCCcchHH
Confidence 00112345555566777765 6789999999986
No 162
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=91.16 E-value=1.1 Score=48.93 Aligned_cols=87 Identities=16% Similarity=0.210 Sum_probs=57.1
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCc-----------------ccCcch
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDN-----------------EMQMDS 230 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~-----------------~~~~~~ 230 (290)
.+|+-|++.+.++.+++.|++|+.|||=.+ ....+-=++.|..+ +. ++-+.+ --..-.
T Consensus 548 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~---~tA~~IA~~lGI~~-~~-v~~G~el~~l~~~el~~~~~~~~VfAr~s 622 (902)
T PRK10517 548 LDPPKETTAPALKALKASGVTVKILTGDSE---LVAAKVCHEVGLDA-GE-VLIGSDIETLSDDELANLAERTTLFARLT 622 (902)
T ss_pred hCcchhhHHHHHHHHHHCCCEEEEEcCCCH---HHHHHHHHHcCCCc-cC-ceeHHHHHhCCHHHHHHHHhhCcEEEEcC
Confidence 678999999999999999999999999543 22223334567741 11 111000 000112
Q ss_pred HHhhHHHHHHHHhcCCeEEEEeCCCccccc
Q 044563 231 REYLSRRRTILQKEGFHITGLISNQMDALI 260 (290)
Q Consensus 231 ~~yKs~~R~~i~~~GYrIv~~iGDq~sDl~ 260 (290)
.+-|...=+.++++| ++|+++||-.+|-.
T Consensus 623 Pe~K~~IV~~Lq~~G-~vVam~GDGvNDaP 651 (902)
T PRK10517 623 PMHKERIVTLLKREG-HVVGFMGDGINDAP 651 (902)
T ss_pred HHHHHHHHHHHHHCC-CEEEEECCCcchHH
Confidence 345767667787776 57899999999975
No 163
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=91.13 E-value=0.55 Score=42.72 Aligned_cols=105 Identities=11% Similarity=0.039 Sum_probs=58.1
Q ss_pred hHHHHHh--hcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhC---CCCCC-CcceeecCcccCcchHHh
Q 044563 160 YIECIEE--AKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISA---GYRGW-SSLIMRLDNEMQMDSREY 233 (290)
Q Consensus 160 w~~Wv~~--~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~---Gy~~~-d~LiLR~~~~~~~~~~~y 233 (290)
|.+.... .+.++.|++.+++++++++|+++.++|+.+.. .+..-+... ++..+ +..+ -......++.-.|
T Consensus 83 w~~~Y~~~~~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~---~~~~~~~~~~~~~L~~~f~~~f-d~~~g~KP~p~~y 158 (220)
T TIGR01691 83 WRQGYESGELTSHLYPDVPPALEAWLQLGLRLAVYSSGSVP---AQKLLFGHSDAGNLTPYFSGYF-DTTVGLKTEAQSY 158 (220)
T ss_pred HHHHHhcCCcccCcCcCHHHHHHHHHHCCCEEEEEeCCCHH---HHHHHHhhccccchhhhcceEE-EeCcccCCCHHHH
Confidence 4444333 34678999999999999999999999997643 222223332 22211 1111 1110111222234
Q ss_pred hHHHHHHHHhcCCe--EEEEeCCCcccccCC-CCcceEEEcc
Q 044563 234 LSRRRTILQKEGFH--ITGLISNQMDALIGQ-SLGKRVFKLP 272 (290)
Q Consensus 234 Ks~~R~~i~~~GYr--Iv~~iGDq~sDl~G~-~~g~r~fkLP 272 (290)
... +++-|-. =+..|||...|+.+. ..|-+++.+-
T Consensus 159 ~~i----~~~lgv~p~e~lfVgDs~~Di~AA~~AG~~ti~v~ 196 (220)
T TIGR01691 159 VKI----AGQLGSPPREILFLSDIINELDAARKAGLHTGQLV 196 (220)
T ss_pred HHH----HHHhCcChhHEEEEeCCHHHHHHHHHcCCEEEEEE
Confidence 322 2222321 156999999999864 3466665553
No 164
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=90.85 E-value=1.5 Score=41.57 Aligned_cols=55 Identities=25% Similarity=0.224 Sum_probs=46.2
Q ss_pred CCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCC
Q 044563 155 VNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGY 212 (290)
Q Consensus 155 ~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy 212 (290)
++.+.-++++.....++.||+.+|++.|+++|+++.++|+= .+.....-|+.+|+
T Consensus 106 ~~~e~i~~~v~~~~l~l~pG~~efl~~L~~~GIpv~IvS~G---~~~~Ie~vL~~lgl 160 (277)
T TIGR01544 106 FPKAKIKEIVAESDVMLKDGYENFFDKLQQHSIPVFIFSAG---IGNVLEEVLRQAGV 160 (277)
T ss_pred CCHHHHHHHHhhcCCccCcCHHHHHHHHHHCCCcEEEEeCC---cHHHHHHHHHHcCC
Confidence 56666777777778999999999999999999999999984 45677777888887
No 165
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=90.49 E-value=1.3 Score=49.15 Aligned_cols=89 Identities=9% Similarity=-0.008 Sum_probs=57.8
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCC----------CcceeecCccc-----------
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGW----------SSLIMRLDNEM----------- 226 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~----------d~LiLR~~~~~----------- 226 (290)
.+|+-|++.+.++.+++.|++|+.|||.... .+..-=++.|+..- +.+.+-+..-.
T Consensus 644 ~Dp~r~~v~~aI~~l~~aGIkv~MiTGD~~~---tA~~iA~~~Gi~~~~~~~~~~~~~~~~vitG~~l~~l~~~~l~~~~ 720 (1053)
T TIGR01523 644 YDPPRNESAGAVEKCHQAGINVHMLTGDFPE---TAKAIAQEVGIIPPNFIHDRDEIMDSMVMTGSQFDALSDEEVDDLK 720 (1053)
T ss_pred ecCCchhHHHHHHHHHHCCCEEEEECCCCHH---HHHHHHHHcCCCCccccccccccccceeeehHHhhhcCHHHHHHHh
Confidence 5689999999999999999999999997643 22222335566311 11121111000
Q ss_pred ------CcchHHhhHHHHHHHHhcCCeEEEEeCCCccccc
Q 044563 227 ------QMDSREYLSRRRTILQKEGFHITGLISNQMDALI 260 (290)
Q Consensus 227 ------~~~~~~yKs~~R~~i~~~GYrIv~~iGDq~sDl~ 260 (290)
..-..+-|...-+.++++|+ +++.+||-.+|..
T Consensus 721 ~~~~V~ar~sP~~K~~iV~~lq~~g~-~Vam~GDGvNDap 759 (1053)
T TIGR01523 721 ALCLVIARCAPQTKVKMIEALHRRKA-FCAMTGDGVNDSP 759 (1053)
T ss_pred hcCeEEEecCHHHHHHHHHHHHhcCC-eeEEeCCCcchHH
Confidence 11123457677777887877 6789999999975
No 166
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=90.29 E-value=1.5 Score=39.91 Aligned_cols=103 Identities=12% Similarity=0.072 Sum_probs=61.8
Q ss_pred hHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCC---CCcceeecC--------cccCc
Q 044563 160 YIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRG---WSSLIMRLD--------NEMQM 228 (290)
Q Consensus 160 w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~---~d~LiLR~~--------~~~~~ 228 (290)
-...+...+...-||+.+|...|+++|.+|++|||--...-+.-. + ..|.|- +...++... .....
T Consensus 78 v~~~v~~~k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va-~--~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~pt 154 (227)
T KOG1615|consen 78 VEQFVIKQKPTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVA-E--QLGIPKSNIYANELLFDKDGKYLGFDTNEPT 154 (227)
T ss_pred HHHHHhcCCCccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHH-H--HhCCcHhhhhhheeeeccCCcccccccCCcc
Confidence 344555667888899999999999999999999996532222111 1 223321 122222211 11111
Q ss_pred chHHhhHHHHHHHHh-cCCeEEEEeCCCcccccCCCCc
Q 044563 229 DSREYLSRRRTILQK-EGFHITGLISNQMDALIGQSLG 265 (290)
Q Consensus 229 ~~~~yKs~~R~~i~~-~GYrIv~~iGDq~sDl~G~~~g 265 (290)
+...-|.+.-++|.+ -.|.-+.+|||--.||.-.+-|
T Consensus 155 sdsggKa~~i~~lrk~~~~~~~~mvGDGatDlea~~pa 192 (227)
T KOG1615|consen 155 SDSGGKAEVIALLRKNYNYKTIVMVGDGATDLEAMPPA 192 (227)
T ss_pred ccCCccHHHHHHHHhCCChheeEEecCCccccccCCch
Confidence 222346666666653 2367789999999999865433
No 167
>PTZ00445 p36-lilke protein; Provisional
Probab=90.29 E-value=0.66 Score=42.53 Aligned_cols=163 Identities=13% Similarity=0.088 Sum_probs=92.7
Q ss_pred hHHHHhhhhhhhhHHHHHHHHHHHHHHHhhhCCCCCCCcEEEEecccccccChhhhhhccCCC-CccchHHHHHhhcCcC
Q 044563 93 RGLAIRYIKEGQFARDLNLSIQIVESYFNTLTPSYNGLDVVLMDIDDIFASSSKYSNLLIDRV-NVRGYIECIEEAKHLK 171 (290)
Q Consensus 93 ~~~v~~Y~~sgqY~~D~~~v~~~A~~y~~~~~~~~~g~~AvVfDIDetLsn~~y~~~~~~G~~-~~~~w~~Wv~~~~apa 171 (290)
...++.|+.++++. ...--+.|..+.+.+.. .|-.+|++|.|-||-... - |.+ ++. +. ...---.+
T Consensus 10 ~~~~~~~~~~~~~~--~~~~~~~~~~~v~~L~~--~GIk~Va~D~DnTlI~~H-----s-gG~~~~~--~~-~~~~~~~~ 76 (219)
T PTZ00445 10 HDAFKEYIESGLFD--HLNPHESADKFVDLLNE--CGIKVIASDFDLTMITKH-----S-GGYIDPD--ND-DIRVLTSV 76 (219)
T ss_pred HHHHHHHHHhcccc--cCCHHHHHHHHHHHHHH--cCCeEEEecchhhhhhhh-----c-ccccCCC--cc-hhhhhccC
Confidence 35688888887765 44555566667666554 456799999999766531 1 222 111 00 00111225
Q ss_pred cHHHHHHHHHHHhCCCeEEEecCCCccc------------hHHHHHHHHh-----------CCCCC-CCc------ceee
Q 044563 172 HMFTLKLFMKLQVRGWPVILLSRKHEGQ------------RNATTELLIS-----------AGYRG-WSS------LIMR 221 (290)
Q Consensus 172 ip~~l~l~~~l~~~Gv~V~~iSgR~e~~------------r~~T~~NL~~-----------~Gy~~-~d~------LiLR 221 (290)
-|....+.+.|++.|++|+++|=-++.. .+--..-|++ +.||. |+. +-|.
T Consensus 77 tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~gl~ 156 (219)
T PTZ00445 77 TPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPLGLD 156 (219)
T ss_pred CHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhhhhccc
Confidence 6778899999999999999999766532 1122222331 24564 532 2222
Q ss_pred cCcccCcchHHhhHHHHHHHHhcCCeE----EEEeCCCcccccCC-CCcceEEEccCCc
Q 044563 222 LDNEMQMDSREYLSRRRTILQKEGFHI----TGLISNQMDALIGQ-SLGKRVFKLPNPL 275 (290)
Q Consensus 222 ~~~~~~~~~~~yKs~~R~~i~~~GYrI----v~~iGDq~sDl~G~-~~g~r~fkLPNPm 275 (290)
.++. ..|+---+++. +.+.| +..|+|......+. ..|-.++-+++|.
T Consensus 157 KPdp------~iK~yHle~ll-~~~gl~peE~LFIDD~~~NVeaA~~lGi~ai~f~~~e 208 (219)
T PTZ00445 157 APMP------LDKSYHLKQVC-SDFNVNPDEILFIDDDMNNCKNALKEGYIALHVTGNE 208 (219)
T ss_pred CCCc------cchHHHHHHHH-HHcCCCHHHeEeecCCHHHHHHHHHCCCEEEEcCChH
Confidence 2222 23433113333 22444 67899988877764 2577777777764
No 168
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=90.13 E-value=6.4 Score=36.65 Aligned_cols=128 Identities=15% Similarity=0.084 Sum_probs=79.3
Q ss_pred CcEEEEeccc-ccccChhhh-hhccCC----------CCccchHHHHHh-------------------hcCcCcHHHHHH
Q 044563 130 LDVVLMDIDD-IFASSSKYS-NLLIDR----------VNVRGYIECIEE-------------------AKHLKHMFTLKL 178 (290)
Q Consensus 130 ~~AvVfDIDe-tLsn~~y~~-~~~~G~----------~~~~~w~~Wv~~-------------------~~apaip~~l~l 178 (290)
+-.++||-|. .++-+.+-. ....|. +-..-|++++.. ..-|..|+++++
T Consensus 13 ril~~FDFD~TIid~dSD~wVv~~lp~~~l~~qL~~t~p~~~Wne~M~rv~k~Lheqgv~~~~ik~~~r~iP~~Pgmv~l 92 (256)
T KOG3120|consen 13 RILLVFDFDRTIIDQDSDNWVVDELPTTDLFNQLRDTYPKGFWNELMDRVFKELHEQGVRIAEIKQVLRSIPIVPGMVRL 92 (256)
T ss_pred cEEEEEecCceeecCCcchHHHHhcccchhHHHHHHhcccchHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCccHHHH
Confidence 3489999999 555554421 111110 212237777641 367899999999
Q ss_pred HHHHHhCCC-eEEEecCCCccchHHHHHHHHhCCCCC--------------CCcceeecCcc-c---CcchHHhhHHHHH
Q 044563 179 FMKLQVRGW-PVILLSRKHEGQRNATTELLISAGYRG--------------WSSLIMRLDNE-M---QMDSREYLSRRRT 239 (290)
Q Consensus 179 ~~~l~~~Gv-~V~~iSgR~e~~r~~T~~NL~~~Gy~~--------------~d~LiLR~~~~-~---~~~~~~yKs~~R~ 239 (290)
++.+++.|. .+++||.-. --.-.++|+++|++. -.+|.+|+--. + .+...-=|-..-.
T Consensus 93 ik~~ak~g~~eliIVSDaN---sfFIe~~Lea~~~~d~F~~IfTNPa~~da~G~L~v~pyH~~hsC~~CPsNmCKg~Vl~ 169 (256)
T KOG3120|consen 93 IKSAAKLGCFELIIVSDAN---SFFIEEILEAAGIHDLFSEIFTNPACVDASGRLLVRPYHTQHSCNLCPSNMCKGLVLD 169 (256)
T ss_pred HHHHHhCCCceEEEEecCc---hhHHHHHHHHccHHHHHHHHhcCCcccCCCCcEEeecCCCCCccCcCchhhhhhHHHH
Confidence 999999997 999999743 345567888888641 12577776432 1 2222223333333
Q ss_pred HHH----hcC--CeEEEEeCCCccccc
Q 044563 240 ILQ----KEG--FHITGLISNQMDALI 260 (290)
Q Consensus 240 ~i~----~~G--YrIv~~iGDq~sDl~ 260 (290)
+++ ++| |.=+.++||--+||-
T Consensus 170 ~~~~s~~~~gv~yer~iYvGDG~nD~C 196 (256)
T KOG3120|consen 170 ELVASQLKDGVRYERLIYVGDGANDFC 196 (256)
T ss_pred HHHHHHhhcCCceeeEEEEcCCCCCcC
Confidence 333 233 656779999999994
No 169
>PRK10671 copA copper exporting ATPase; Provisional
Probab=89.18 E-value=1.6 Score=46.96 Aligned_cols=80 Identities=11% Similarity=0.197 Sum_probs=57.7
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCcccCcchHHhhHHHHHHHHhcCCe
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGFH 247 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GYr 247 (290)
.++..|++.+.++.+++.|++++++||.++ ..+.+-++..|... .+-.-. .+.|.+.-+++..+|.
T Consensus 648 ~d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~---~~a~~ia~~lgi~~---~~~~~~-------p~~K~~~i~~l~~~~~- 713 (834)
T PRK10671 648 RDPLRSDSVAALQRLHKAGYRLVMLTGDNP---TTANAIAKEAGIDE---VIAGVL-------PDGKAEAIKRLQSQGR- 713 (834)
T ss_pred cCcchhhHHHHHHHHHHCCCeEEEEcCCCH---HHHHHHHHHcCCCE---EEeCCC-------HHHHHHHHHHHhhcCC-
Confidence 567889999999999999999999999654 45556677788852 222111 1246666666766665
Q ss_pred EEEEeCCCcccccC
Q 044563 248 ITGLISNQMDALIG 261 (290)
Q Consensus 248 Iv~~iGDq~sDl~G 261 (290)
.++.+||..+|..-
T Consensus 714 ~v~~vGDg~nD~~a 727 (834)
T PRK10671 714 QVAMVGDGINDAPA 727 (834)
T ss_pred EEEEEeCCHHHHHH
Confidence 47799999999864
No 170
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=89.06 E-value=1.8 Score=42.19 Aligned_cols=43 Identities=21% Similarity=0.192 Sum_probs=34.2
Q ss_pred cEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhC----CCeEEEecCCCc
Q 044563 131 DVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVR----GWPVILLSRKHE 197 (290)
Q Consensus 131 ~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~----Gv~V~~iSgR~e 197 (290)
=+++|||||+|--. ..++|++.+-++.|... .+..+|+||=..
T Consensus 36 fgfafDIDGVL~RG------------------------~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg 82 (389)
T KOG1618|consen 36 FGFAFDIDGVLFRG------------------------HRPIPGALKALRRLVDNQGQLKIPFVFLTNGGG 82 (389)
T ss_pred eeEEEecccEEEec------------------------CCCCcchHHHHHHHHhcCCCeeccEEEEeCCCC
Confidence 38999999966431 14588899999999888 899999999754
No 171
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=88.78 E-value=1.7 Score=43.76 Aligned_cols=76 Identities=18% Similarity=0.159 Sum_probs=54.1
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCcccCcchHHhhHHHHHHHHhcCCe
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGFH 247 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GYr 247 (290)
.++..|++.+..+.+++.|++++++||..+..-....+.| |. +-+ -..+.|...=++++++|+
T Consensus 345 ~d~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia~~l---gi------~~~-------~~p~~K~~~v~~l~~~g~- 407 (499)
T TIGR01494 345 EDPLRDDAKETISELREAGIRVIMLTGDNVLTAKAIAKEL---GI------FAR-------VTPEEKAALVEALQKKGR- 407 (499)
T ss_pred cCCCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc---Cc------eec-------cCHHHHHHHHHHHHHCCC-
Confidence 4688899999999999999999999998764433333333 53 111 123467666667777774
Q ss_pred EEEEeCCCccccc
Q 044563 248 ITGLISNQMDALI 260 (290)
Q Consensus 248 Iv~~iGDq~sDl~ 260 (290)
.++.+||-.+|..
T Consensus 408 ~v~~vGDg~nD~~ 420 (499)
T TIGR01494 408 VVAMTGDGVNDAP 420 (499)
T ss_pred EEEEECCChhhHH
Confidence 5789999999984
No 172
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=88.69 E-value=0.7 Score=50.11 Aligned_cols=49 Identities=12% Similarity=0.246 Sum_probs=37.5
Q ss_pred CCcEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHH-HhCCCeEEEecCCCc
Q 044563 129 GLDVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKL-QVRGWPVILLSRKHE 197 (290)
Q Consensus 129 g~~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l-~~~Gv~V~~iSgR~e 197 (290)
.+.++++|.||||....- . ...+-|.++++++.| ...|..|+++|||+-
T Consensus 595 ~~rlI~LDyDGTLlp~~~--------~------------~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~ 644 (854)
T PLN02205 595 TTRAILLDYDGTLMPQAS--------I------------DKSPSSKSIDILNTLCRDKNNMVFIVSARSR 644 (854)
T ss_pred cCeEEEEecCCcccCCcc--------c------------cCCCCHHHHHHHHHHHhcCCCEEEEEeCCCH
Confidence 356999999998885410 0 123457899999997 788999999999974
No 173
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=88.66 E-value=0.65 Score=40.84 Aligned_cols=136 Identities=13% Similarity=0.039 Sum_probs=61.6
Q ss_pred CcEEEEecccccccChhhhhhccCCC---Ccc--chHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHH
Q 044563 130 LDVVLMDIDDIFASSSKYSNLLIDRV---NVR--GYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATT 204 (290)
Q Consensus 130 ~~AvVfDIDetLsn~~y~~~~~~G~~---~~~--~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~ 204 (290)
|..||||+|.||-.-.-+.. ....| +.. -.+. .-.+-.-.|++.+.++.|+.+|++|.+-|.=++. +...
T Consensus 3 PklvvFDLD~TlW~~~~~~~-~~~Pf~~~~~~~~v~D~--~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P--~~A~ 77 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPPWMDTH-VGPPFKKISNGNVVVDS--RGEEVSLYPDVPEILQELKERGVKLAVASRTDEP--DWAR 77 (169)
T ss_dssp -SEEEE-STTTSSSS-TTTS-S-S-EEE-TTS--EEET--T--EE---TTHHHHHHHHHHCT--EEEEE--S-H--HHHH
T ss_pred CcEEEEcCcCCCCchhHhhc-cCCCceecCCCCEEEeC--CCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCCh--HHHH
Confidence 67999999999987654432 11111 110 0111 0113345788999999999999999999854433 5667
Q ss_pred HHHHhCCCCC--CCcceeecC---cccCcchHHhhHHHHHHHH-h--cCCeEEEEeCCCcccccCCC-CcceEEEccC
Q 044563 205 ELLISAGYRG--WSSLIMRLD---NEMQMDSREYLSRRRTILQ-K--EGFHITGLISNQMDALIGQS-LGKRVFKLPN 273 (290)
Q Consensus 205 ~NL~~~Gy~~--~d~LiLR~~---~~~~~~~~~yKs~~R~~i~-~--~GYrIv~~iGDq~sDl~G~~-~g~r~fkLPN 273 (290)
+-|+..+.+. ....-|..- .+-... -|..-.++|. + --|.=...++|..-...-.. .|-.....||
T Consensus 78 ~~L~~l~i~~~~~~~~~~~~~F~~~eI~~g---sK~~Hf~~i~~~tgI~y~eMlFFDDe~~N~~~v~~lGV~~v~v~~ 152 (169)
T PF12689_consen 78 ELLKLLEIDDADGDGVPLIEYFDYLEIYPG---SKTTHFRRIHRKTGIPYEEMLFFDDESRNIEVVSKLGVTCVLVPD 152 (169)
T ss_dssp HHHHHTT-C----------CCECEEEESSS----HHHHHHHHHHHH---GGGEEEEES-HHHHHHHHTTT-EEEE-SS
T ss_pred HHHHhcCCCccccccccchhhcchhheecC---chHHHHHHHHHhcCCChhHEEEecCchhcceeeEecCcEEEEeCC
Confidence 7777777751 111111100 000000 1333333332 1 23666778888766543322 5666666777
No 174
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=88.25 E-value=0.68 Score=42.49 Aligned_cols=33 Identities=9% Similarity=0.039 Sum_probs=19.8
Q ss_pred HHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCC
Q 044563 178 LFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYR 213 (290)
Q Consensus 178 l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~ 213 (290)
+++...+.++..+++|||+-. ...+-|++.+.+
T Consensus 27 ~l~~~~~~~~~~v~~TGRs~~---~~~~~~~~~~l~ 59 (247)
T PF05116_consen 27 LLEQQARPEILFVYVTGRSLE---SVLRLLREYNLP 59 (247)
T ss_dssp HHHHHHCCGEEEEEE-SS-HH---HHHHHHHHCT-E
T ss_pred HHHHhhCCCceEEEECCCCHH---HHHHHHHhCCCC
Confidence 333455788999999999843 344556666765
No 175
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=88.22 E-value=0.65 Score=41.34 Aligned_cols=89 Identities=12% Similarity=0.168 Sum_probs=56.2
Q ss_pred EEEecccccccChhhhhhc--------------------cCCCCccchHHHHHhhcCcCcHH-----HHHHHHHHHhCCC
Q 044563 133 VLMDIDDIFASSSKYSNLL--------------------IDRVNVRGYIECIEEAKHLKHMF-----TLKLFMKLQVRGW 187 (290)
Q Consensus 133 vVfDIDetLsn~~y~~~~~--------------------~G~~~~~~w~~Wv~~~~apaip~-----~l~l~~~l~~~Gv 187 (290)
.-+|||||+..-|++.... .+.-..+.|.+|.+..++.--.. -++..=...+...
T Consensus 9 ~ciDIDGtit~~~t~~~~~n~~f~kslse~d~t~y~lhkil~i~~ee~~k~~e~~ea~l~ke~l~~q~v~~~L~~~~e~~ 88 (194)
T COG5663 9 CCIDIDGTITDDPTFAPYLNPAFEKSLSEADPTDYDLHKILNITTEEFWKWMEQTEAWLYKEALLAQLVKQVLPSLKEEH 88 (194)
T ss_pred eeeccCCceecCcccchhccHHHHhhhhhcccccccHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Confidence 4589999776655433210 01123356778887544332222 1112222334457
Q ss_pred eEEEecCCCccchHHHHHHHHhCCCCCCCcceeec
Q 044563 188 PVILLSRKHEGQRNATTELLISAGYRGWSSLIMRL 222 (290)
Q Consensus 188 ~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~ 222 (290)
++||+|.|....-..|-+||.....| +++|.+-+
T Consensus 89 ~L~~itar~~dl~~iT~~~l~~q~ih-~~~l~i~g 122 (194)
T COG5663 89 RLIYITARKADLTRITYAWLFIQNIH-YDHLEIVG 122 (194)
T ss_pred eeeeeehhhHHHHHHHHHHHHHhccc-hhhhhhhc
Confidence 89999999999999999999999986 77877654
No 176
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=88.12 E-value=1.1 Score=49.12 Aligned_cols=61 Identities=10% Similarity=0.060 Sum_probs=40.0
Q ss_pred CCcEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhC-CCeEEEecCCCcc
Q 044563 129 GLDVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVR-GWPVILLSRKHEG 198 (290)
Q Consensus 129 g~~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~-Gv~V~~iSgR~e~ 198 (290)
++.+++||.||||....- +|...-.-+..-.+.+-|+++++++.|.+. +..|++||||+..
T Consensus 590 ~~RLlfLDyDGTLap~~~---------~P~~~~~~~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~ 651 (934)
T PLN03064 590 NNRLLILGFNATLTEPVD---------TPGRRGDQIKEMELRLHPELKEPLRALCSDPKTTIVVLSGSDRS 651 (934)
T ss_pred cceEEEEecCceeccCCC---------CcccccccccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCCHH
Confidence 356899999998876411 111000001112345678899999999876 7899999999853
No 177
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=87.85 E-value=6.2 Score=35.82 Aligned_cols=91 Identities=11% Similarity=-0.079 Sum_probs=59.6
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCC-C------------C-CCCcceeecCcccCcchHHh
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAG-Y------------R-GWSSLIMRLDNEMQMDSREY 233 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~G-y------------~-~~d~LiLR~~~~~~~~~~~y 233 (290)
+..--|+-.+|+++++++++.++.||+--+.--.+-.+++.... . + +|.+-++-+.++.-. -.
T Consensus 71 ~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG---~d 147 (220)
T COG4359 71 DIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFG---HD 147 (220)
T ss_pred hcccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecCceEcCCCceeeecCCccccC---CC
Confidence 35556788899999999999999999987655444444443111 1 1 344445544332211 13
Q ss_pred hHHHHHHHHhcCCeEEEEeCCCcccccCC
Q 044563 234 LSRRRTILQKEGFHITGLISNQMDALIGQ 262 (290)
Q Consensus 234 Ks~~R~~i~~~GYrIv~~iGDq~sDl~G~ 262 (290)
|+..-+++. +.|.=+.++||.-+|+...
T Consensus 148 K~~vI~~l~-e~~e~~fy~GDsvsDlsaa 175 (220)
T COG4359 148 KSSVIHELS-EPNESIFYCGDSVSDLSAA 175 (220)
T ss_pred cchhHHHhh-cCCceEEEecCCcccccHh
Confidence 666666664 6678799999999999864
No 178
>PRK11590 hypothetical protein; Provisional
Probab=87.75 E-value=4.2 Score=36.01 Aligned_cols=103 Identities=11% Similarity=-0.009 Sum_probs=60.3
Q ss_pred CcCcHHHHHHH-HHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcce-----eecCcccCcchHHhhHHHHHHHH
Q 044563 169 HLKHMFTLKLF-MKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLI-----MRLDNEMQMDSREYLSRRRTILQ 242 (290)
Q Consensus 169 apaip~~l~l~-~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~Li-----LR~~~~~~~~~~~yKs~~R~~i~ 242 (290)
..+.|++.+++ +.+++.|++|+++|+.++ ..+...+...|+..-++++ .+-.+.- ....-+..+..+.|.
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~---~~~~~il~~l~~~~~~~~i~t~l~~~~tg~~-~g~~c~g~~K~~~l~ 169 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSPQ---PLVEQVYFDTPWLPRVNLIASQMQRRYGGWV-LTLRCLGHEKVAQLE 169 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCcH---HHHHHHHHHccccccCceEEEEEEEEEccEE-CCccCCChHHHHHHH
Confidence 45689999999 578889999999999874 5566677777742222332 1111100 011124444444444
Q ss_pred h---cCCeEEEEeCCCcccccCC-CCcceEEEccCCc
Q 044563 243 K---EGFHITGLISNQMDALIGQ-SLGKRVFKLPNPL 275 (290)
Q Consensus 243 ~---~GYrIv~~iGDq~sDl~G~-~~g~r~fkLPNPm 275 (290)
+ ..+...-.-||..+|+.=- ..++.+.+=|+|.
T Consensus 170 ~~~~~~~~~~~aY~Ds~~D~pmL~~a~~~~~vnp~~~ 206 (211)
T PRK11590 170 RKIGTPLRLYSGYSDSKQDNPLLYFCQHRWRVTPRGE 206 (211)
T ss_pred HHhCCCcceEEEecCCcccHHHHHhCCCCEEECccHH
Confidence 3 2455555679999998632 2344455556653
No 179
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=87.37 E-value=0.86 Score=40.09 Aligned_cols=94 Identities=10% Similarity=0.029 Sum_probs=56.0
Q ss_pred CcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCC-CcceeecC-cccCcchHHhhHHHHHHHHhcCC
Q 044563 169 HLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGW-SSLIMRLD-NEMQMDSREYLSRRRTILQKEGF 246 (290)
Q Consensus 169 apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~-d~LiLR~~-~~~~~~~~~yKs~~R~~i~~~GY 246 (290)
.++.|++.++++.| ++++.++||-+ ++.+..-|+..|+..+ +..+.-.. ....|+..+.- ...+++-|-
T Consensus 87 ~~~~~gv~~~L~~L---~~~~~ivTn~~---~~~~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p~~~---~~a~~~~~~ 157 (221)
T PRK10563 87 LEPIAGANALLESI---TVPMCVVSNGP---VSKMQHSLGKTGMLHYFPDKLFSGYDIQRWKPDPALM---FHAAEAMNV 157 (221)
T ss_pred CCcCCCHHHHHHHc---CCCEEEEeCCc---HHHHHHHHHhcChHHhCcceEeeHHhcCCCCCChHHH---HHHHHHcCC
Confidence 56778888888877 59999999953 5567778888998655 23444322 12223222121 122333332
Q ss_pred eE--EEEeCCCcccccCC-CCcceEEEc
Q 044563 247 HI--TGLISNQMDALIGQ-SLGKRVFKL 271 (290)
Q Consensus 247 rI--v~~iGDq~sDl~G~-~~g~r~fkL 271 (290)
.. +..|||.++|+.+. ..|-+++-+
T Consensus 158 ~p~~~l~igDs~~di~aA~~aG~~~i~~ 185 (221)
T PRK10563 158 NVENCILVDDSSAGAQSGIAAGMEVFYF 185 (221)
T ss_pred CHHHeEEEeCcHhhHHHHHHCCCEEEEE
Confidence 22 46799999999763 345555444
No 180
>PLN02382 probable sucrose-phosphatase
Probab=86.99 E-value=0.99 Score=44.81 Aligned_cols=47 Identities=6% Similarity=0.072 Sum_probs=29.8
Q ss_pred CcEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCC
Q 044563 130 LDVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKH 196 (290)
Q Consensus 130 ~~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~ 196 (290)
+..|+.|+||||.+... .+ ..+. +.--.+++++.++|+..++.|||+
T Consensus 9 ~~lI~sDLDGTLL~~~~--~~---~~s~---------------~~~~~l~~~~~~~gi~fv~aTGR~ 55 (413)
T PLN02382 9 RLMIVSDLDHTMVDHHD--PE---NLSL---------------LRFNALWEAEYRHDSLLVFSTGRS 55 (413)
T ss_pred CEEEEEcCCCcCcCCCC--cc---chhH---------------HHHHHHHHHhhcCCeeEEEEcCCC
Confidence 44899999998776410 00 0111 112234466888999999999997
No 181
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=86.21 E-value=0.6 Score=39.21 Aligned_cols=127 Identities=17% Similarity=0.143 Sum_probs=63.3
Q ss_pred EEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCC
Q 044563 132 VVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAG 211 (290)
Q Consensus 132 AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~G 211 (290)
.+|||+||||-........ ..+.. ...=.....--.-|++.+|++.+ +..++|++.|...+..-...++.|...+
T Consensus 2 ~LVlDLD~TLv~~~~~~~~---~~~~~-~~~~~~~~~v~~RP~l~~FL~~l-~~~~ev~i~T~~~~~ya~~v~~~ldp~~ 76 (159)
T PF03031_consen 2 TLVLDLDGTLVHSSSKSPL---PYDFK-IIDQRGGYYVKLRPGLDEFLEEL-SKHYEVVIWTSASEEYAEPVLDALDPNG 76 (159)
T ss_dssp EEEEE-CTTTEEEESSTCT---T-SEE-EETEEEEEEEEE-TTHHHHHHHH-HHHCEEEEE-SS-HHHHHHHHHHHTTTT
T ss_pred EEEEeCCCcEEEEeecCCC---Ccccc-eeccccceeEeeCchHHHHHHHH-HHhceEEEEEeehhhhhhHHHHhhhhhc
Confidence 6899999977765321100 00000 00000001122468999999999 5559999999999888777788887543
Q ss_pred CCCCCcceeecCcccCcchHHhhHHHHHHHHhcC--CeEEEEeCCCcccccCCCCcceEEEcc
Q 044563 212 YRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEG--FHITGLISNQMDALIGQSLGKRVFKLP 272 (290)
Q Consensus 212 y~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~G--YrIv~~iGDq~sDl~G~~~g~r~fkLP 272 (290)
- ..++.+.|.......... .| .|..-| ..=+..|+|...-+.... ...+..|
T Consensus 77 ~-~~~~~~~r~~~~~~~~~~-~K-----dL~~l~~~~~~vvivDD~~~~~~~~~--~N~i~v~ 130 (159)
T PF03031_consen 77 K-LFSRRLYRDDCTFDKGSY-IK-----DLSKLGRDLDNVVIVDDSPRKWALQP--DNGIPVP 130 (159)
T ss_dssp S-SEEEEEEGGGSEEETTEE-E-------GGGSSS-GGGEEEEES-GGGGTTSG--GGEEE--
T ss_pred c-cccccccccccccccccc-cc-----chHHHhhccccEEEEeCCHHHeeccC--CceEEec
Confidence 2 124566664332111111 12 344334 244557788777655442 3345444
No 182
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=85.74 E-value=4 Score=35.55 Aligned_cols=102 Identities=14% Similarity=0.157 Sum_probs=67.3
Q ss_pred CcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCC-CCcceeecCcccCcchHHhhHHHHHHHHhcCCe
Q 044563 169 HLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRG-WSSLIMRLDNEMQMDSREYLSRRRTILQKEGFH 247 (290)
Q Consensus 169 apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~-~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GYr 247 (290)
-++.|+++++++.++.+ +++.++||= .+....+-|++.|+.+ ++.++.-......|+....- ...++..|-.
T Consensus 98 ~~~~~~~~~~L~~l~~~-~~l~ilTNg---~~~~~~~~l~~~gl~~~Fd~v~~s~~~g~~KP~~~~f---~~~~~~~g~~ 170 (229)
T COG1011 98 LPDYPEALEALKELGKK-YKLGILTNG---ARPHQERKLRQLGLLDYFDAVFISEDVGVAKPDPEIF---EYALEKLGVP 170 (229)
T ss_pred CccChhHHHHHHHHHhh-ccEEEEeCC---ChHHHHHHHHHcCChhhhheEEEecccccCCCCcHHH---HHHHHHcCCC
Confidence 68899999999999999 999999994 3567889999999654 45666554433333322222 2333444432
Q ss_pred --EEEEeCCCcccc-cCC-CCcceEEEccCCccc
Q 044563 248 --ITGLISNQMDAL-IGQ-SLGKRVFKLPNPLYY 277 (290)
Q Consensus 248 --Iv~~iGDq~sDl-~G~-~~g~r~fkLPNPmY~ 277 (290)
=+..|||+.... .|. ..|-+++-+..+.+.
T Consensus 171 p~~~l~VgD~~~~di~gA~~~G~~~vwi~~~~~~ 204 (229)
T COG1011 171 PEEALFVGDSLENDILGARALGMKTVWINRGGKP 204 (229)
T ss_pred cceEEEECCChhhhhHHHHhcCcEEEEECCCCCC
Confidence 367899977655 554 467777655555443
No 183
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=85.12 E-value=2.1 Score=40.95 Aligned_cols=71 Identities=14% Similarity=0.244 Sum_probs=46.7
Q ss_pred CCCcEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHH
Q 044563 128 NGLDVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELL 207 (290)
Q Consensus 128 ~g~~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL 207 (290)
..|.+||||+|+||-+... ..-.+-|.+.+-++.|++.|.-+++-|-=.+. .-.+.|
T Consensus 120 ~~phVIVfDlD~TLItd~~--------------------~v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~e---HV~~sl 176 (297)
T PF05152_consen 120 EPPHVIVFDLDSTLITDEG--------------------DVRIRDPAVYDSLRELKEQGCVLVLWSYGNRE---HVRHSL 176 (297)
T ss_pred CCCcEEEEECCCcccccCC--------------------ccccCChHHHHHHHHHHHcCCEEEEecCCCHH---HHHHHH
Confidence 3456999999998876521 01133466777888999999999999875544 444555
Q ss_pred HhCCCCCCCcceee
Q 044563 208 ISAGYRGWSSLIMR 221 (290)
Q Consensus 208 ~~~Gy~~~d~LiLR 221 (290)
++.|..++=.+++-
T Consensus 177 ~~~~L~~~Fd~ii~ 190 (297)
T PF05152_consen 177 KELKLEGYFDIIIC 190 (297)
T ss_pred HHhCCccccEEEEe
Confidence 55555444345554
No 184
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=83.38 E-value=2.6 Score=45.34 Aligned_cols=55 Identities=11% Similarity=0.094 Sum_probs=38.7
Q ss_pred CCcEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhC-CCeEEEecCCCcc
Q 044563 129 GLDVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVR-GWPVILLSRKHEG 198 (290)
Q Consensus 129 g~~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~-Gv~V~~iSgR~e~ 198 (290)
++.+++||.||||..... . .-+| ..+.+-|+++++++.|.+. +..|++||||+..
T Consensus 506 ~~rll~LDyDGTL~~~~~--~----~~~p---------~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~ 561 (797)
T PLN03063 506 NNRLLILGFYGTLTEPRN--S----QIKE---------MDLGLHPELKETLKALCSDPKTTVVVLSRSGKD 561 (797)
T ss_pred cCeEEEEecCccccCCCC--C----cccc---------ccCCCCHHHHHHHHHHHcCCCCEEEEEeCCCHH
Confidence 356899999999883210 0 0011 2345678999999999876 7899999999743
No 185
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=82.18 E-value=6.1 Score=43.12 Aligned_cols=80 Identities=13% Similarity=0.190 Sum_probs=54.5
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCcccCcchHHhhHHHHHHHHhcCCe
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGFH 247 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GYr 247 (290)
.++.-|++....+.|++.|++++++||-.. .+-..-=+..|+. ..+- +- . -+-|.+.=++|+++| .
T Consensus 721 ~D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~---~aA~svA~~VGi~---~V~a--ev-~----P~~K~~~Ik~lq~~~-~ 786 (951)
T KOG0207|consen 721 EDQVRPDAALAVAELKSMGIKVVMLTGDND---AAARSVAQQVGID---NVYA--EV-L----PEQKAEKIKEIQKNG-G 786 (951)
T ss_pred ccccchhHHHHHHHHHhcCceEEEEcCCCH---HHHHHHHHhhCcc---eEEe--cc-C----chhhHHHHHHHHhcC-C
Confidence 567778888889999999999999999543 3333333455753 2221 11 0 124777778898877 7
Q ss_pred EEEEeCCCcccccC
Q 044563 248 ITGLISNQMDALIG 261 (290)
Q Consensus 248 Iv~~iGDq~sDl~G 261 (290)
.++++||-.+|=..
T Consensus 787 ~VaMVGDGINDaPA 800 (951)
T KOG0207|consen 787 PVAMVGDGINDAPA 800 (951)
T ss_pred cEEEEeCCCCccHH
Confidence 88899999998653
No 186
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=77.95 E-value=4.9 Score=36.14 Aligned_cols=66 Identities=11% Similarity=0.170 Sum_probs=44.1
Q ss_pred CCCCCCCcEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHH
Q 044563 124 TPSYNGLDVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNAT 203 (290)
Q Consensus 124 ~~~~~g~~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T 203 (290)
.+...||+..|+|+||||-....-. + .+.--.-|++-+|++.+.+ .+.|++-|......-+.-
T Consensus 15 ~~~~~~kklLVLDLDeTLvh~~~~~--------~--------~~~~~kRP~l~eFL~~~~~-~feIvVwTAa~~~ya~~~ 77 (195)
T TIGR02245 15 NPPREGKKLLVLDIDYTLFDHRSPA--------E--------TGEELMRPYLHEFLTSAYE-DYDIVIWSATSMKWIEIK 77 (195)
T ss_pred CCCCCCCcEEEEeCCCceEcccccC--------C--------CceEEeCCCHHHHHHHHHh-CCEEEEEecCCHHHHHHH
Confidence 3445678899999999776431100 0 0112356889999999999 899999999776544443
Q ss_pred HHH
Q 044563 204 TEL 206 (290)
Q Consensus 204 ~~N 206 (290)
++.
T Consensus 78 l~~ 80 (195)
T TIGR02245 78 MTE 80 (195)
T ss_pred HHH
Confidence 333
No 187
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=76.23 E-value=15 Score=32.81 Aligned_cols=101 Identities=8% Similarity=-0.051 Sum_probs=55.8
Q ss_pred cCcHHHHHHHH-HHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcce-----eecCcccCcchHHhhHHHHHHHH-
Q 044563 170 LKHMFTLKLFM-KLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLI-----MRLDNEMQMDSREYLSRRRTILQ- 242 (290)
Q Consensus 170 paip~~l~l~~-~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~Li-----LR~~~~~~~~~~~yKs~~R~~i~- 242 (290)
...|+++++++ .+++.|.+|+++|+-++. .+....+..|+-+-++++ .+..+.- ....-+-.+..+.|+
T Consensus 94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~~---~~~~ia~~~~~~~~~~~i~t~le~~~gg~~-~g~~c~g~~Kv~rl~~ 169 (210)
T TIGR01545 94 TAFPLVAERLRQYLESSDADIWLITGSPQP---LVEAVYFDSNFIHRLNLIASQIERGNGGWV-LPLRCLGHEKVAQLEQ 169 (210)
T ss_pred CCCccHHHHHHHHHHhCCCEEEEEcCCcHH---HHHHHHHhccccccCcEEEEEeEEeCCceE-cCccCCChHHHHHHHH
Confidence 46799999996 788899999999997653 333444444432223333 1111100 001112233333333
Q ss_pred --hcCCeEEEEeCCCcccccCC-CCcceEEEccCC
Q 044563 243 --KEGFHITGLISNQMDALIGQ-SLGKRVFKLPNP 274 (290)
Q Consensus 243 --~~GYrIv~~iGDq~sDl~G~-~~g~r~fkLPNP 274 (290)
...+.+.-.-||..+|+.=- ..++.+.+=|+|
T Consensus 170 ~~~~~~~~~~aYsDS~~D~pmL~~a~~~~~Vnp~~ 204 (210)
T TIGR01545 170 KIGSPLKLYSGYSDSKQDNPLLAFCEHRWRVSKRG 204 (210)
T ss_pred HhCCChhheEEecCCcccHHHHHhCCCcEEECcch
Confidence 23566666789999998631 234445555554
No 188
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=73.26 E-value=16 Score=40.60 Aligned_cols=30 Identities=7% Similarity=0.079 Sum_probs=27.7
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCc
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHE 197 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e 197 (290)
++|+-|++.+.++.+++.|++|+.|||...
T Consensus 654 ~d~lr~~~~~~I~~l~~agi~v~miTGD~~ 683 (1054)
T TIGR01657 654 ENPLKPDTKEVIKELKRASIRTVMITGDNP 683 (1054)
T ss_pred ecCCCccHHHHHHHHHHCCCeEEEECCCCH
Confidence 568999999999999999999999999864
No 189
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=72.19 E-value=4.4 Score=37.93 Aligned_cols=17 Identities=18% Similarity=0.374 Sum_probs=12.9
Q ss_pred CCcEEEEecccccccCh
Q 044563 129 GLDVVLMDIDDIFASSS 145 (290)
Q Consensus 129 g~~AvVfDIDetLsn~~ 145 (290)
..++||||+||||-++.
T Consensus 39 ~~k~VIFDlDGTLvDS~ 55 (286)
T PLN02779 39 LPEALLFDCDGVLVETE 55 (286)
T ss_pred CCcEEEEeCceeEEccc
Confidence 35799999999665554
No 190
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=70.81 E-value=9.2 Score=36.43 Aligned_cols=92 Identities=11% Similarity=0.079 Sum_probs=51.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhhCCCCCCCcEEEEecccccccChhhhhhccCC--CCccchHHHHHhhcCcCcHHH
Q 044563 98 RYIKEGQFARDLNLSIQIVESYFNTLTPSYNGLDVVLMDIDDIFASSSKYSNLLIDR--VNVRGYIECIEEAKHLKHMFT 175 (290)
Q Consensus 98 ~Y~~sgqY~~D~~~v~~~A~~y~~~~~~~~~g~~AvVfDIDetLsn~~y~~~~~~G~--~~~~~w~~Wv~~~~apaip~~ 175 (290)
-|+.+.-.-.+-+.+.+.+..+.+.-.| -|++++|+|-. .....+. +|++. .|..
T Consensus 12 G~~~sr~~y~~~~ev~~~~~~~~~~~iP----~d~i~lD~~~~-------~~~~~~~f~~d~~~------------FPdp 68 (319)
T cd06591 12 GFWQSKERYKTQEELLDVAKEYRKRGIP----LDVIVQDWFYW-------PKQGWGEWKFDPER------------FPDP 68 (319)
T ss_pred HHHHhcccCCCHHHHHHHHHHHHHhCCC----ccEEEEechhh-------cCCCceeEEEChhh------------CCCH
Confidence 3444333223445566666666654333 26999998731 1111112 33333 3345
Q ss_pred HHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCC
Q 044563 176 LKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGY 212 (290)
Q Consensus 176 l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy 212 (290)
.+++++|+++|++|+++..-.-.....+-+-+++.||
T Consensus 69 ~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~ 105 (319)
T cd06591 69 KAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGY 105 (319)
T ss_pred HHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCE
Confidence 6899999999999998765433333344556666665
No 191
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=70.48 E-value=2.1 Score=37.16 Aligned_cols=13 Identities=23% Similarity=0.644 Sum_probs=10.8
Q ss_pred EEEEecccccccC
Q 044563 132 VVLMDIDDIFASS 144 (290)
Q Consensus 132 AvVfDIDetLsn~ 144 (290)
+||||+||||-++
T Consensus 2 ~viFD~DGTLiDs 14 (197)
T TIGR01548 2 ALVLDMDGVMADV 14 (197)
T ss_pred ceEEecCceEEec
Confidence 7999999966665
No 192
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=70.06 E-value=2.5 Score=35.70 Aligned_cols=14 Identities=21% Similarity=0.634 Sum_probs=11.5
Q ss_pred cEEEEecccccccC
Q 044563 131 DVVLMDIDDIFASS 144 (290)
Q Consensus 131 ~AvVfDIDetLsn~ 144 (290)
++|+||+||||.++
T Consensus 2 ~~iiFD~DGTL~ds 15 (185)
T TIGR02009 2 KAVIFDMDGVIVDT 15 (185)
T ss_pred CeEEEcCCCcccCC
Confidence 58999999966665
No 193
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=69.94 E-value=7.1 Score=36.42 Aligned_cols=44 Identities=25% Similarity=0.374 Sum_probs=31.3
Q ss_pred cEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCcc
Q 044563 131 DVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEG 198 (290)
Q Consensus 131 ~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~ 198 (290)
..|-.|||+||.+.. |++ .| +-..+..|+..|+.||++|..+..
T Consensus 8 ~lIFtDlD~TLl~~~---------ye~-----------~p----A~pv~~el~d~G~~Vi~~SSKT~a 51 (274)
T COG3769 8 LLIFTDLDGTLLPHS---------YEW-----------QP----AAPVLLELKDAGVPVILCSSKTRA 51 (274)
T ss_pred eEEEEcccCcccCCC---------CCC-----------Cc----cchHHHHHHHcCCeEEEeccchHH
Confidence 367789999888732 222 12 334677899999999999997643
No 194
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=69.19 E-value=20 Score=29.93 Aligned_cols=67 Identities=10% Similarity=0.119 Sum_probs=46.8
Q ss_pred eEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCcccCcchHHhhHHHHHHHHhcCCeEEEEeCCCccccc
Q 044563 188 PVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGFHITGLISNQMDALI 260 (290)
Q Consensus 188 ~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GYrIv~~iGDq~sDl~ 260 (290)
+||+++||++..++...+.|++.|+. -+++......+.+.. - .-.+.+.+-+|-|+..-.|...-..
T Consensus 1 kVFIvhg~~~~~~~~v~~~L~~~~~e---p~i~~~~~~~g~tii-e--~le~~~~~~~faIvl~TpDD~~~~~ 67 (125)
T PF10137_consen 1 KVFIVHGRDLAAAEAVERFLEKLGLE---PIIWHEQPNLGQTII-E--KLEEAADSVDFAIVLFTPDDIGYSR 67 (125)
T ss_pred CEEEEeCCCHHHHHHHHHHHHhCCCc---eEEeecCCCCCCchH-H--HHHHHhccCCEEEEEEccccccccc
Confidence 69999999999999999999999885 344443333344333 1 2233455578999999988776443
No 195
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=66.88 E-value=3.3 Score=36.11 Aligned_cols=14 Identities=21% Similarity=0.638 Sum_probs=11.5
Q ss_pred cEEEEecccccccC
Q 044563 131 DVVLMDIDDIFASS 144 (290)
Q Consensus 131 ~AvVfDIDetLsn~ 144 (290)
.+|+||+||||-++
T Consensus 3 ~~viFDlDGTL~ds 16 (221)
T TIGR02253 3 KAIFFDLDDTLIDT 16 (221)
T ss_pred eEEEEeCCCCCcCC
Confidence 58999999976654
No 196
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=66.04 E-value=3.2 Score=35.83 Aligned_cols=14 Identities=7% Similarity=0.145 Sum_probs=11.5
Q ss_pred cEEEEecccccccC
Q 044563 131 DVVLMDIDDIFASS 144 (290)
Q Consensus 131 ~AvVfDIDetLsn~ 144 (290)
.+|+||+||||-++
T Consensus 1 k~viFDlDGTL~d~ 14 (203)
T TIGR02252 1 KLITFDAVGTLLAL 14 (203)
T ss_pred CeEEEecCCceeee
Confidence 38999999977665
No 197
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=63.08 E-value=4.3 Score=36.61 Aligned_cols=14 Identities=14% Similarity=0.200 Sum_probs=11.8
Q ss_pred cEEEEecccccccC
Q 044563 131 DVVLMDIDDIFASS 144 (290)
Q Consensus 131 ~AvVfDIDetLsn~ 144 (290)
.+||||+||||-++
T Consensus 3 k~viFD~DGTLiDs 16 (253)
T TIGR01422 3 EAVIFDWAGTTVDF 16 (253)
T ss_pred eEEEEeCCCCeecC
Confidence 58999999977765
No 198
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=63.00 E-value=31 Score=27.70 Aligned_cols=66 Identities=12% Similarity=0.016 Sum_probs=43.7
Q ss_pred EEEecCCCccchHHHHHHHHhCCCCCCCcceeecCcccC----cchH-HhhHHHHHHHH-hcCCeEEEEeCCC
Q 044563 189 VILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDNEMQ----MDSR-EYLSRRRTILQ-KEGFHITGLISNQ 255 (290)
Q Consensus 189 V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~~~~----~~~~-~yKs~~R~~i~-~~GYrIv~~iGDq 255 (290)
++|||+.+......-.+-|+..|||. ..++||.-+... +... ++|...-++|. .-..+=...|||.
T Consensus 2 f~YvS~SPwnly~~l~~Fl~~~~~P~-G~~~Lr~~~~~~~~~~~~~~~~~K~~~i~~i~~~fP~~kfiLIGDs 73 (100)
T PF09949_consen 2 FFYVSNSPWNLYPFLRDFLRRNGFPA-GPLLLRDYGPSLSGLFKSGAEEHKRDNIERILRDFPERKFILIGDS 73 (100)
T ss_pred EEEEcCCHHHHHHHHHHHHHhcCCCC-CceEcccCCccccccccCCchhHHHHHHHHHHHHCCCCcEEEEeeC
Confidence 79999999888888889999999984 358888653221 1122 46766544444 3344455577775
No 199
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=62.20 E-value=4.3 Score=36.87 Aligned_cols=15 Identities=40% Similarity=0.733 Sum_probs=12.5
Q ss_pred CcEEEEecccccccC
Q 044563 130 LDVVLMDIDDIFASS 144 (290)
Q Consensus 130 ~~AvVfDIDetLsn~ 144 (290)
..+||||+||||-++
T Consensus 22 ~k~viFDlDGTLiDs 36 (248)
T PLN02770 22 LEAVLFDVDGTLCDS 36 (248)
T ss_pred cCEEEEcCCCccCcC
Confidence 469999999977776
No 200
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=60.90 E-value=25 Score=34.26 Aligned_cols=92 Identities=16% Similarity=0.163 Sum_probs=59.4
Q ss_pred CCCcEEEEecccccccChhhhhhccCCCC-ccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHH
Q 044563 128 NGLDVVLMDIDDIFASSSKYSNLLIDRVN-VRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTEL 206 (290)
Q Consensus 128 ~g~~AvVfDIDetLsn~~y~~~~~~G~~~-~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~N 206 (290)
.|+..++||=|-...|..| .|.++ -+.-..|+.+.-.|. .|++|-+|
T Consensus 172 ~~~~~~~f~pd~~~~~~~f-----~G~~~nf~el~~Wi~dKcvpL---------------------------VREiTFeN 219 (375)
T KOG0912|consen 172 PGKNILVFDPDHSEPNHEF-----LGSMTNFDELKQWIQDKCVPL---------------------------VREITFEN 219 (375)
T ss_pred CCCceEEeCCCcCCcCccc-----ccccccHHHHHHHHHhcchhh---------------------------hhhhhhcc
Confidence 4566899998887777644 24322 223567887754443 25666655
Q ss_pred ---HHhCCCCCCCcceeecCcccCcchHHhhHHHHHHHHhcCCeEEEEeCC
Q 044563 207 ---LISAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGFHITGLISN 254 (290)
Q Consensus 207 ---L~~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GYrIv~~iGD 254 (290)
|...|.| -|||....+...+.-.||+..+++|..+.-.|.-.++|
T Consensus 220 ~EELtEEGlP---flILf~~kdD~~s~k~F~~aI~ReL~~e~~~in~l~AD 267 (375)
T KOG0912|consen 220 AEELTEEGLP---FLILFRKKDDKESEKIFKNAIARELDDETLAINFLTAD 267 (375)
T ss_pred HHHHhhcCCc---eEEEEecCCcccHHHHHHHHHHHHhhhhhhccceeecC
Confidence 5667887 45554344444456679999999998776666666655
No 201
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=60.82 E-value=4.3 Score=37.09 Aligned_cols=14 Identities=14% Similarity=0.157 Sum_probs=11.8
Q ss_pred cEEEEecccccccC
Q 044563 131 DVVLMDIDDIFASS 144 (290)
Q Consensus 131 ~AvVfDIDetLsn~ 144 (290)
++||||+||||-++
T Consensus 5 k~vIFDlDGTLiDs 18 (267)
T PRK13478 5 QAVIFDWAGTTVDF 18 (267)
T ss_pred EEEEEcCCCCeecC
Confidence 59999999977765
No 202
>PRK11590 hypothetical protein; Provisional
Probab=60.44 E-value=4.8 Score=35.61 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=12.2
Q ss_pred CCcEEEEeccccccc
Q 044563 129 GLDVVLMDIDDIFAS 143 (290)
Q Consensus 129 g~~AvVfDIDetLsn 143 (290)
.++++|||+||||-.
T Consensus 5 ~~k~~iFD~DGTL~~ 19 (211)
T PRK11590 5 ERRVVFFDLDGTLHQ 19 (211)
T ss_pred cceEEEEecCCCCcc
Confidence 356999999998873
No 203
>PF03345 DDOST_48kD: Oligosaccharyltransferase 48 kDa subunit beta; InterPro: IPR005013 During N-linked glycosylation of proteins, oligosaccharide chains are assembled on the carrier molecule dolichyl pyrophosphate in the following order: 2 molecules of N-acetylglucosamine (GlcNAc), 9 molecules of mannose, and 3 molecules of glucose. These 14-residue oligosaccharide cores are then transferred to asparagine residues on nascent polypeptide chains in the endoplasmic reticulum (ER). As proteins progress through the Golgi apparatus, the oligosaccharide cores are modified by trimming and extension to generate a diverse array of glycosylated proteins [, ]. The oligosaccharyl transferase complex (OST complex) 2.4.1.119 from EC transfers 14-sugar branched oligosaccharides from dolichyl pyrophosphate to asparagine residues []. The complex contains nine protein subunits: Ost1p, Ost2p, Ost3p, Ost4p, Ost5p, Ost6p, Stt3p, Swp1p, and Wbp1p, all of which are integral membrane proteins of the ER. The OST complex interacts with the Sec61p pore complex [] involved in protein import into the ER. This entry represents subunits OST3 and OST6. OST3 is homologous to OST6 [], and several lines of evidence indicate that they are alternative members of the OST complex. Disruption of both OST3 and OST6 causes severe underglycosylation of soluble and membrane-bound glycoproteins and a defect in the assembly of the complex. Hence, the function of these genes seems to be essential for recruiting a fully active complex necessary for efficient N-glycosylation []. This entry also includes the magnesium transporter protein 1, also known as OST3 homologue B, which might be involved in N-glycosylation through its association with the oligosaccharyl transferase (OST) complex. Wbp1p is the beta subunit of the OST complex, one of the original six subunits purified []. Wbp1 is essential [, ], but conditional mutants have decreased transferase activity [, ]. Wbp1p is homologous to mammalian OST48 [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane
Probab=60.06 E-value=23 Score=35.60 Aligned_cols=76 Identities=20% Similarity=0.173 Sum_probs=54.0
Q ss_pred HHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCcccCc-chHHhhHHHHHHHHhcCCeEEEEeCC
Q 044563 176 LKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDNEMQM-DSREYLSRRRTILQKEGFHITGLISN 254 (290)
Q Consensus 176 l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~~~~~-~~~~yKs~~R~~i~~~GYrIv~~iGD 254 (290)
-.|++.|+++|+++-|.+-.++ .-.|.+.|.+-||+||+-++..+.- ..+ ....--+..+.|-+|+...+-
T Consensus 15 S~Ff~~L~~rg~~l~~~~~~d~------~l~L~~~ge~~YD~LIif~~~~k~~g~~l--s~~~ll~Fvd~GgNilv~~s~ 86 (423)
T PF03345_consen 15 STFFNSLKERGYELTFKSADDE------SLSLFKYGERLYDHLIIFPPSVKEFGGSL--SPKTLLDFVDNGGNILVAGSS 86 (423)
T ss_pred HHHHHHHHhCCCEEEEecCCCC------CcchhhCChhhcceEEEeCCcccccCCCC--CHHHHHHHHhCCCcEEEEeCC
Confidence 3588999999999999998763 3468999999999999987653321 112 223344566788888877666
Q ss_pred C-cccc
Q 044563 255 Q-MDAL 259 (290)
Q Consensus 255 q-~sDl 259 (290)
+ .+|-
T Consensus 87 ~~~~~~ 92 (423)
T PF03345_consen 87 DAIPDS 92 (423)
T ss_pred CcCcHH
Confidence 6 4543
No 204
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=59.99 E-value=18 Score=29.94 Aligned_cols=49 Identities=10% Similarity=0.107 Sum_probs=33.8
Q ss_pred CchhhhHHHHhhhhhhhhHHHHHHHHHHHHHHHhhhCCCCCCCcEEEEe
Q 044563 88 LPEICRGLAIRYIKEGQFARDLNLSIQIVESYFNTLTPSYNGLDVVLMD 136 (290)
Q Consensus 88 vP~~C~~~v~~Y~~sgqY~~D~~~v~~~A~~y~~~~~~~~~g~~AvVfD 136 (290)
=|.+....+..-+.++.|++.-.++...-..-++.....=.+-||||||
T Consensus 42 dp~qA~~~~~~rl~s~~~~~~q~~L~~Ayqgv~~Aw~lgi~k~PAVVfD 90 (114)
T PF07511_consen 42 DPQQAEAQARQRLQSPDWQQLQQQLAQAYQGVVDAWSLGITKYPAVVFD 90 (114)
T ss_pred ChHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHhCccccCEEEEc
Confidence 4667777888889999977766666555444444444444566899999
No 205
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=59.58 E-value=54 Score=31.15 Aligned_cols=39 Identities=13% Similarity=0.114 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCC
Q 044563 174 FTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGY 212 (290)
Q Consensus 174 ~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy 212 (290)
.-.+++++|+++|++|+++..-.-......-+-+++.||
T Consensus 71 dp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~~g~ 109 (317)
T cd06598 71 DPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVKAGA 109 (317)
T ss_pred CHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHhCCC
Confidence 346899999999999998876433333445677888887
No 206
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=59.01 E-value=24 Score=30.46 Aligned_cols=65 Identities=11% Similarity=0.174 Sum_probs=40.1
Q ss_pred HHHHHHHhCCCeEEEecCCCcc-----------chHHHHHHHHhC-CCCCCCcceeecCcccCcchHHhhHHHHHHHHhc
Q 044563 177 KLFMKLQVRGWPVILLSRKHEG-----------QRNATTELLISA-GYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKE 244 (290)
Q Consensus 177 ~l~~~l~~~Gv~V~~iSgR~e~-----------~r~~T~~NL~~~-Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~ 244 (290)
++++.+.+.|+.|-.=|-.... +-..+.+.|++. |-+ --++|.+... +-...++.+.+.
T Consensus 49 ~~~~~i~~~Gheig~Ht~~H~~~~~~~~~~~~~ei~~~~~~l~~~~g~~---~~~fr~P~G~------~~~~~~~~l~~~ 119 (191)
T TIGR02764 49 ELVKEIVKDGHEIGSHGYRHKNYTTLEDEKIKKDILRAQEIIEKLTGKK---PTLFRPPSGA------FNKAVLKAAESL 119 (191)
T ss_pred HHHHHHHhCCCEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHhCCC---CCEEECCCcC------CCHHHHHHHHHc
Confidence 5778888899888766554321 123444556554 332 3456766532 234567778889
Q ss_pred CCeEEE
Q 044563 245 GFHITG 250 (290)
Q Consensus 245 GYrIv~ 250 (290)
||+++.
T Consensus 120 G~~~v~ 125 (191)
T TIGR02764 120 GYTVVH 125 (191)
T ss_pred CCeEEE
Confidence 999875
No 207
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=58.68 E-value=65 Score=35.42 Aligned_cols=88 Identities=9% Similarity=0.030 Sum_probs=57.7
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHH-HhCCCCCCCc----ceeecCcccCc--------------
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELL-ISAGYRGWSS----LIMRLDNEMQM-------------- 228 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL-~~~Gy~~~d~----LiLR~~~~~~~-------------- 228 (290)
-+||-|++.+-.+.+++.|+.|+.|||-.. .|.+.+ ++.|+.+.+. --|-+...+..
T Consensus 582 ~DPPR~ev~~ai~~c~~aGIrV~mITGD~~----~TA~AI~r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~~~~~~v 657 (972)
T KOG0202|consen 582 LDPPRPEVADAIELCRQAGIRVIMITGDNK----ETAEAIAREIGIFSEDEDVSSMALTGSEFDDLSDEELDDAVRRVLV 657 (972)
T ss_pred cCCCchhHHHHHHHHHHcCCEEEEEcCCCH----HHHHHHHHHhCCCcCCccccccccchhhhhcCCHHHHHHHhhcceE
Confidence 478999999999999999999999999664 344444 3557553332 11111110000
Q ss_pred ---chHHhhHHHHHHHHhcCCeEEEEeCCCccccc
Q 044563 229 ---DSREYLSRRRTILQKEGFHITGLISNQMDALI 260 (290)
Q Consensus 229 ---~~~~yKs~~R~~i~~~GYrIv~~iGDq~sDl~ 260 (290)
-.-.-|...=+.|++. -.|+++-||--+|=.
T Consensus 658 FaR~~P~HK~kIVeaLq~~-geivAMTGDGVNDAp 691 (972)
T KOG0202|consen 658 FARAEPQHKLKIVEALQSR-GEVVAMTGDGVNDAP 691 (972)
T ss_pred EEecCchhHHHHHHHHHhc-CCEEEecCCCccchh
Confidence 0123466666777755 689999999999864
No 208
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=58.54 E-value=41 Score=31.22 Aligned_cols=38 Identities=32% Similarity=0.443 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCC
Q 044563 173 MFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYR 213 (290)
Q Consensus 173 p~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~ 213 (290)
.-++.|.+.|+++|+.|+|++.+.+... .+.|++.||+
T Consensus 18 ~Rcl~LA~~l~~~g~~v~f~~~~~~~~~---~~~i~~~g~~ 55 (279)
T TIGR03590 18 MRCLTLARALHAQGAEVAFACKPLPGDL---IDLLLSAGFP 55 (279)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHH---HHHHHHcCCe
Confidence 3477888999999999999998865432 4677888885
No 209
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=57.38 E-value=6.4 Score=34.52 Aligned_cols=15 Identities=27% Similarity=0.561 Sum_probs=12.1
Q ss_pred CcEEEEecccccccC
Q 044563 130 LDVVLMDIDDIFASS 144 (290)
Q Consensus 130 ~~AvVfDIDetLsn~ 144 (290)
.++||||+||||-++
T Consensus 4 ~~~viFD~DGTL~d~ 18 (221)
T PRK10563 4 IEAVFFDCDGTLVDS 18 (221)
T ss_pred CCEEEECCCCCCCCC
Confidence 469999999966665
No 210
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=57.25 E-value=4.5 Score=33.78 Aligned_cols=13 Identities=23% Similarity=0.726 Sum_probs=10.2
Q ss_pred EEEEecccccccC
Q 044563 132 VVLMDIDDIFASS 144 (290)
Q Consensus 132 AvVfDIDetLsn~ 144 (290)
+|+||+||||-+.
T Consensus 1 ~vlFDlDgtLv~~ 13 (183)
T TIGR01509 1 AILFDLDGVLVDT 13 (183)
T ss_pred CeeeccCCceech
Confidence 6899999955554
No 211
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=57.13 E-value=16 Score=28.87 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=23.7
Q ss_pred cHHHHHHHHHHHhCCCeEEEecCCCcc
Q 044563 172 HMFTLKLFMKLQVRGWPVILLSRKHEG 198 (290)
Q Consensus 172 ip~~l~l~~~l~~~Gv~V~~iSgR~e~ 198 (290)
-..+++.++.++++|.+|+.||+.++.
T Consensus 66 ~~~~~~~~~~ak~~g~~vi~iT~~~~~ 92 (131)
T PF01380_consen 66 TRELIELLRFAKERGAPVILITSNSES 92 (131)
T ss_dssp THHHHHHHHHHHHTTSEEEEEESSTTS
T ss_pred chhhhhhhHHHHhcCCeEEEEeCCCCC
Confidence 467899999999999999999998764
No 212
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=56.63 E-value=16 Score=28.89 Aligned_cols=26 Identities=19% Similarity=0.116 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhCCCeEEEecCCCcc
Q 044563 173 MFTLKLFMKLQVRGWPVILLSRKHEG 198 (290)
Q Consensus 173 p~~l~l~~~l~~~Gv~V~~iSgR~e~ 198 (290)
+.++++.+.++++|.+|+.||+..+.
T Consensus 74 ~~~~~~~~~a~~~g~~iv~iT~~~~~ 99 (139)
T cd05013 74 KETVEAAEIAKERGAKVIAITDSANS 99 (139)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCC
Confidence 56889999999999999999998764
No 213
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=55.69 E-value=16 Score=29.03 Aligned_cols=27 Identities=11% Similarity=0.046 Sum_probs=23.8
Q ss_pred cHHHHHHHHHHHhCCCeEEEecCCCcc
Q 044563 172 HMFTLKLFMKLQVRGWPVILLSRKHEG 198 (290)
Q Consensus 172 ip~~l~l~~~l~~~Gv~V~~iSgR~e~ 198 (290)
-+.+++..+.++++|.+|+.||+.++.
T Consensus 59 t~e~~~~~~~a~~~g~~vi~iT~~~~s 85 (126)
T cd05008 59 TADTLAALRLAKEKGAKTVAITNVVGS 85 (126)
T ss_pred CHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 457999999999999999999998754
No 214
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=55.31 E-value=17 Score=28.99 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=24.0
Q ss_pred cHHHHHHHHHHHhCCCeEEEecCCCcc
Q 044563 172 HMFTLKLFMKLQVRGWPVILLSRKHEG 198 (290)
Q Consensus 172 ip~~l~l~~~l~~~Gv~V~~iSgR~e~ 198 (290)
.+.+++..+.++++|.+|+.||+.++.
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (128)
T cd05014 60 TDELLNLLPHLKRRGAPIIAITGNPNS 86 (128)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 467999999999999999999998764
No 215
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=54.96 E-value=25 Score=29.14 Aligned_cols=49 Identities=14% Similarity=0.123 Sum_probs=30.9
Q ss_pred CchhhhHHHHhhhhhhhhHHHHHHHHHHHHHHHhhhCCCCCCCcEEEEe
Q 044563 88 LPEICRGLAIRYIKEGQFARDLNLSIQIVESYFNTLTPSYNGLDVVLMD 136 (290)
Q Consensus 88 vP~~C~~~v~~Y~~sgqY~~D~~~v~~~A~~y~~~~~~~~~g~~AvVfD 136 (290)
=|.+....+...+.+.++++.-.++.+....-.+.....=.+-||||||
T Consensus 43 dp~qA~~~~~~~l~sp~~~~~q~~l~~Ayqgv~~Aw~lGi~k~PAVV~D 91 (113)
T TIGR03757 43 DPQQAAAQARQRLQSPDWARLQRRLAQAYQGVADAWQLGVTKIPAVVVD 91 (113)
T ss_pred CHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCCccCCEEEEc
Confidence 4667778888888887765554444433333334334433566899999
No 216
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=54.33 E-value=17 Score=35.58 Aligned_cols=38 Identities=18% Similarity=0.138 Sum_probs=29.8
Q ss_pred cCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhC
Q 044563 170 LKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISA 210 (290)
Q Consensus 170 paip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~ 210 (290)
.+-|++.++++.++++|.+++++||-+. ..|..-|+..
T Consensus 184 ~~~pgl~elL~~Lr~~G~klfLvTNS~~---~yt~~im~~l 221 (343)
T TIGR02244 184 LRDPKLPLFLSKLKEHGKKLFLLTNSDY---DYTDKGMKYL 221 (343)
T ss_pred ccchhHHHHHHHHHHCCCeEEEEeCCCH---HHHHHHHHHh
Confidence 4478999999999999999999999764 4454555553
No 217
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=53.71 E-value=17 Score=31.16 Aligned_cols=27 Identities=15% Similarity=0.065 Sum_probs=24.1
Q ss_pred cHHHHHHHHHHHhCCCeEEEecCCCcc
Q 044563 172 HMFTLKLFMKLQVRGWPVILLSRKHEG 198 (290)
Q Consensus 172 ip~~l~l~~~l~~~Gv~V~~iSgR~e~ 198 (290)
.+.+++..+.++++|.+|+.||+.++.
T Consensus 85 t~~~i~~~~~ak~~g~~ii~IT~~~~s 111 (179)
T TIGR03127 85 TESLVTVAKKAKEIGATVAAITTNPES 111 (179)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 467899999999999999999998764
No 218
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=51.72 E-value=8.5 Score=33.48 Aligned_cols=15 Identities=20% Similarity=0.472 Sum_probs=12.3
Q ss_pred cEEEEecccccccCh
Q 044563 131 DVVLMDIDDIFASSS 145 (290)
Q Consensus 131 ~AvVfDIDetLsn~~ 145 (290)
++||||+||||.+..
T Consensus 3 k~viFDldGtL~d~~ 17 (211)
T TIGR02247 3 KAVIFDFGGVLLPSP 17 (211)
T ss_pred eEEEEecCCceecCH
Confidence 489999999777753
No 219
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=51.65 E-value=9.9 Score=33.46 Aligned_cols=16 Identities=19% Similarity=0.441 Sum_probs=12.6
Q ss_pred CCcEEEEecccccccC
Q 044563 129 GLDVVLMDIDDIFASS 144 (290)
Q Consensus 129 g~~AvVfDIDetLsn~ 144 (290)
...+||||+||||.++
T Consensus 6 ~~k~iiFD~DGTL~d~ 21 (222)
T PRK10826 6 QILAAIFDMDGLLIDS 21 (222)
T ss_pred cCcEEEEcCCCCCCcC
Confidence 3569999999977655
No 220
>COG4996 Predicted phosphatase [General function prediction only]
Probab=51.62 E-value=57 Score=28.26 Aligned_cols=85 Identities=13% Similarity=0.085 Sum_probs=51.5
Q ss_pred EEEEecccccccChhhhhhc--cCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHh
Q 044563 132 VVLMDIDDIFASSSKYSNLL--IDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLIS 209 (290)
Q Consensus 132 AvVfDIDetLsn~~y~~~~~--~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~ 209 (290)
|||||.|+||-......... |..-++.+-.+ ..-.+-...|.+.++++.++..|.-+-..|=-. .....+-|++
T Consensus 2 ~i~~d~d~t~wdhh~iSsl~pPf~rVs~n~i~D-s~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~---~~kA~~aLra 77 (164)
T COG4996 2 AIVFDADKTLWDHHNISSLEPPFRRVSSNTIED-SKGREVHLFPDVKETLKWARNSGYILGLASWNF---EDKAIKALRA 77 (164)
T ss_pred cEEEeCCCcccccccchhcCCcceecCccceec-CCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCc---hHHHHHHHHH
Confidence 79999999876642211100 00111111100 001234567899999999999999777777644 3567888999
Q ss_pred CCCCCCCccee
Q 044563 210 AGYRGWSSLIM 220 (290)
Q Consensus 210 ~Gy~~~d~LiL 220 (290)
.|...+=+.+.
T Consensus 78 l~~~~yFhy~V 88 (164)
T COG4996 78 LDLLQYFHYIV 88 (164)
T ss_pred hchhhhEEEEE
Confidence 99765544444
No 221
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=51.45 E-value=59 Score=31.54 Aligned_cols=75 Identities=17% Similarity=0.164 Sum_probs=45.0
Q ss_pred HHHHHHHhCCCeEEEecCC------CccchHH----HHHHHHhCCCC----CCCcceeecCcccCcchHHhhHHHHHHHH
Q 044563 177 KLFMKLQVRGWPVILLSRK------HEGQRNA----TTELLISAGYR----GWSSLIMRLDNEMQMDSREYLSRRRTILQ 242 (290)
Q Consensus 177 ~l~~~l~~~Gv~V~~iSgR------~e~~r~~----T~~NL~~~Gy~----~~d~LiLR~~~~~~~~~~~yKs~~R~~i~ 242 (290)
++++.++++|++|++..+- ++..|+. .++.+++.||. +|+...-+... .+..-+..=.+.|+++.
T Consensus 68 ~~~~~A~~~~v~v~~~~~~~~~~l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~-d~~~~t~llkelr~~l~ 146 (358)
T cd02875 68 ELLCYAHSKGVRLVLKGDVPLEQISNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSP-EYYALTELVKETTKAFK 146 (358)
T ss_pred HHHHHHHHcCCEEEEECccCHHHcCCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcc-hHHHHHHHHHHHHHHHh
Confidence 7888999999999987652 2334544 44555688987 46654432211 12222334456677776
Q ss_pred hc--CCeEEEEe
Q 044563 243 KE--GFHITGLI 252 (290)
Q Consensus 243 ~~--GYrIv~~i 252 (290)
++ ||.+...+
T Consensus 147 ~~~~~~~Lsvav 158 (358)
T cd02875 147 KENPGYQISFDV 158 (358)
T ss_pred hcCCCcEEEEEE
Confidence 65 67776544
No 222
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=51.24 E-value=75 Score=34.96 Aligned_cols=88 Identities=16% Similarity=0.120 Sum_probs=58.8
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHH-hCCCCCCC--cceeecCccc-----------------C
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLI-SAGYRGWS--SLIMRLDNEM-----------------Q 227 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~-~~Gy~~~d--~LiLR~~~~~-----------------~ 227 (290)
.+|+-+++.+-.+.+++.|++|..|||=. ..|..+.- +.|...-. .+.+-+..-. .
T Consensus 545 ~Dppr~~v~~aI~~l~~AGI~v~MiTGD~----~~TA~aIa~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~VfA 620 (917)
T COG0474 545 EDPPREDVKEAIEELREAGIKVWMITGDH----VETAIAIAKECGIEAEAESALVIDGAELDALSDEELAELVEELSVFA 620 (917)
T ss_pred cCCCCccHHHHHHHHHHCCCcEEEECCCC----HHHHHHHHHHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCcEEE
Confidence 68999999999999999999999999954 34555554 44654222 1232221100 0
Q ss_pred cchHHhhHHHHHHHHhcCCeEEEEeCCCccccc
Q 044563 228 MDSREYLSRRRTILQKEGFHITGLISNQMDALI 260 (290)
Q Consensus 228 ~~~~~yKs~~R~~i~~~GYrIv~~iGDq~sDl~ 260 (290)
.-+-+-|...=+.+++. -++++++||=-+|-.
T Consensus 621 RvsP~qK~~IV~~lq~~-g~vVamtGDGvNDap 652 (917)
T COG0474 621 RVSPEQKARIVEALQKS-GHVVAMTGDGVNDAP 652 (917)
T ss_pred EcCHHHHHHHHHHHHhC-CCEEEEeCCCchhHH
Confidence 01234576667778777 457899999999975
No 223
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=50.44 E-value=6.5 Score=34.12 Aligned_cols=12 Identities=33% Similarity=0.750 Sum_probs=10.0
Q ss_pred EEEecccccccC
Q 044563 133 VLMDIDDIFASS 144 (290)
Q Consensus 133 vVfDIDetLsn~ 144 (290)
||||+||||-++
T Consensus 1 iiFDlDGTL~Ds 12 (205)
T TIGR01454 1 VVFDLDGVLVDS 12 (205)
T ss_pred CeecCcCccccC
Confidence 689999977776
No 224
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=49.45 E-value=23 Score=28.54 Aligned_cols=27 Identities=19% Similarity=0.082 Sum_probs=24.0
Q ss_pred cHHHHHHHHHHHhCCCeEEEecCCCcc
Q 044563 172 HMFTLKLFMKLQVRGWPVILLSRKHEG 198 (290)
Q Consensus 172 ip~~l~l~~~l~~~Gv~V~~iSgR~e~ 198 (290)
.+.+++..+.++++|.+|+.||+.++.
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (120)
T cd05710 60 TKETVAAAKFAKEKGATVIGLTDDEDS 86 (120)
T ss_pred ChHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 467899999999999999999998764
No 225
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=48.84 E-value=64 Score=25.55 Aligned_cols=71 Identities=21% Similarity=0.332 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCcccCcchHHhhHHHHHHHHhcCCeEEEEeC
Q 044563 174 FTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGFHITGLIS 253 (290)
Q Consensus 174 ~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GYrIv~~iG 253 (290)
-+.++.+.|.+.|++|.++|-+.+. .+.....|+. .-.+ ..+.........+. ..++-+.++++.||=..+
T Consensus 12 ~~~~~~~~L~~~g~~V~ii~~~~~~-----~~~~~~~~i~-~~~~--~~~~k~~~~~~~~~-~l~k~ik~~~~DvIh~h~ 82 (139)
T PF13477_consen 12 FIYNLAKELKKRGYDVHIITPRNDY-----EKYEIIEGIK-VIRL--PSPRKSPLNYIKYF-RLRKIIKKEKPDVIHCHT 82 (139)
T ss_pred HHHHHHHHHHHCCCEEEEEEcCCCc-----hhhhHhCCeE-EEEe--cCCCCccHHHHHHH-HHHHHhccCCCCEEEEec
Confidence 4678899999999999999996654 3444466653 1111 10111111222344 557778889999994433
No 226
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=48.53 E-value=7.2 Score=33.71 Aligned_cols=12 Identities=42% Similarity=0.708 Sum_probs=9.7
Q ss_pred EEEecccccccC
Q 044563 133 VLMDIDDIFASS 144 (290)
Q Consensus 133 vVfDIDetLsn~ 144 (290)
||||+||||-++
T Consensus 1 viFD~DGTL~Ds 12 (213)
T TIGR01449 1 VLFDLDGTLVDS 12 (213)
T ss_pred CeecCCCccccC
Confidence 699999966665
No 227
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=48.22 E-value=86 Score=26.99 Aligned_cols=71 Identities=8% Similarity=0.177 Sum_probs=38.3
Q ss_pred HHHHHHhCCCeEEEecCCCccch----HHHHHHHHhCCCCCCCcceeecCcccCcchHHhhHHHHHHHHhcCCeEEE
Q 044563 178 LFMKLQVRGWPVILLSRKHEGQR----NATTELLISAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGFHITG 250 (290)
Q Consensus 178 l~~~l~~~Gv~V~~iSgR~e~~r----~~T~~NL~~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GYrIv~ 250 (290)
..+.+++.|++++.-|-.+.+.. +.-.+++.+.--+ -+-++|-. ++....+++-=...-..+.++||+++.
T Consensus 112 ~~~~l~~~G~~~v~w~~~~~D~~~~~~~~i~~~~~~~~~~-g~Iil~Hd-~~~~~~t~~~l~~~i~~l~~~Gy~~vt 186 (191)
T TIGR02764 112 VLKAAESLGYTVVHWSVDSRDWKNPGVESIVDRVVKNTKP-GDIILLHA-SDSAKQTVKALPTIIKKLKEKGYEFVT 186 (191)
T ss_pred HHHHHHHcCCeEEEecCCCCccCCCCHHHHHHHHHhcCCC-CCEEEEeC-CCCcHhHHHHHHHHHHHHHHCCCEEEE
Confidence 45567889999998876654332 2222333333222 23455553 222222232223455677889999875
No 228
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=47.50 E-value=24 Score=30.19 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=24.7
Q ss_pred CcHHHHHHHHHHHhCCCeEEEecCCCcc
Q 044563 171 KHMFTLKLFMKLQVRGWPVILLSRKHEG 198 (290)
Q Consensus 171 aip~~l~l~~~l~~~Gv~V~~iSgR~e~ 198 (290)
..+.+++..+.++++|.+|+.||+.+.+
T Consensus 113 ~t~~~i~~~~~ak~~Ga~vI~IT~~~~s 140 (177)
T cd05006 113 NSPNVLKALEAAKERGMKTIALTGRDGG 140 (177)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 3578999999999999999999998654
No 229
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=47.33 E-value=24 Score=30.26 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=24.2
Q ss_pred cHHHHHHHHHHHhCCCeEEEecCCCcc
Q 044563 172 HMFTLKLFMKLQVRGWPVILLSRKHEG 198 (290)
Q Consensus 172 ip~~l~l~~~l~~~Gv~V~~iSgR~e~ 198 (290)
.+.++++.+.++++|.+|+.||+.++.
T Consensus 88 t~~~i~~~~~ak~~g~~iI~IT~~~~s 114 (179)
T cd05005 88 TSSVVNAAEKAKKAGAKVVLITSNPDS 114 (179)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 467899999999999999999998765
No 230
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=47.00 E-value=31 Score=26.33 Aligned_cols=64 Identities=13% Similarity=0.141 Sum_probs=40.1
Q ss_pred HHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCcccCcchHHhhHHHHHHHHhcCCeEEEEeCC
Q 044563 175 TLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGFHITGLISN 254 (290)
Q Consensus 175 ~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GYrIv~~iGD 254 (290)
.+++.+.+.++|++|+ -|. .|.+.|+++|++- ..++.+..+. . ....+.+....+..|-|.=+
T Consensus 2 ~~~~~~~l~~lG~~i~-AT~-------gTa~~L~~~Gi~~-~~~~~ki~~~-~-------~~i~~~i~~g~id~VIn~~~ 64 (90)
T smart00851 2 LVELAKRLAELGFELV-ATG-------GTAKFLREAGLPV-KTLHPKVHGG-I-------LAILDLIKNGEIDLVINTLY 64 (90)
T ss_pred HHHHHHHHHHCCCEEE-Ecc-------HHHHHHHHCCCcc-eeccCCCCCC-C-------HHHHHHhcCCCeEEEEECCC
Confidence 4678899999999997 333 4889999999852 2233332111 1 12444565566777777644
Q ss_pred C
Q 044563 255 Q 255 (290)
Q Consensus 255 q 255 (290)
.
T Consensus 65 ~ 65 (90)
T smart00851 65 P 65 (90)
T ss_pred c
Confidence 3
No 231
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=45.61 E-value=44 Score=29.22 Aligned_cols=67 Identities=16% Similarity=0.175 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhhhCCCCCCCcEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeE
Q 044563 110 NLSIQIVESYFNTLTPSYNGLDVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPV 189 (290)
Q Consensus 110 ~~v~~~A~~y~~~~~~~~~g~~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V 189 (290)
..+.++|..+++.+...+...+.+++||+.. ..... -+.+. ....+.+|++.++++|.++
T Consensus 67 ~~~~~Qa~~f~~~~~~~~~~~~~i~lDiE~~-~~~~~--------~~~~~-----------~~~~~~~f~~~~~~~G~~~ 126 (196)
T cd06416 67 GSAAGQVQTFLQYLKANGIKYGTVWIDIEQN-PCQWS--------SDVAS-----------NCQFLQELVSAAKALGLKV 126 (196)
T ss_pred CCHHHHHHHHHHHHHhCCCceeEEEEEEecC-CCCCc--------CCHHH-----------HHHHHHHHHHHHHHhCCeE
Confidence 4566788888887765433445677999874 11100 01110 1123567888999999999
Q ss_pred EEecCCC
Q 044563 190 ILLSRKH 196 (290)
Q Consensus 190 ~~iSgR~ 196 (290)
.+-|++.
T Consensus 127 ~iYt~~~ 133 (196)
T cd06416 127 GIYSSQY 133 (196)
T ss_pred EEEcCcc
Confidence 9999975
No 232
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=45.34 E-value=41 Score=31.27 Aligned_cols=102 Identities=17% Similarity=0.112 Sum_probs=62.4
Q ss_pred cCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCC-CCCcceeecCc-ccCcchHHhhHHHHHHHHhcCCe
Q 044563 170 LKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYR-GWSSLIMRLDN-EMQMDSREYLSRRRTILQKEGFH 247 (290)
Q Consensus 170 paip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~-~~d~LiLR~~~-~~~~~~~~yKs~~R~~i~~~GYr 247 (290)
..+.+++++++.++.+|..+.++||=+...| .-|...|.. -+|..+.--.. ...++.--|.-.. +.+.-+ =.
T Consensus 113 ~~~~~~~~~lq~lR~~g~~l~iisN~d~r~~----~~l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~al-~~l~v~-Pe 186 (237)
T KOG3085|consen 113 KYLDGMQELLQKLRKKGTILGIISNFDDRLR----LLLLPLGLSAYFDFVVESCEVGLEKPDPRIFQLAL-ERLGVK-PE 186 (237)
T ss_pred eeccHHHHHHHHHHhCCeEEEEecCCcHHHH----HHhhccCHHHhhhhhhhhhhhccCCCChHHHHHHH-HHhCCC-hH
Confidence 4578899999999999999999999887666 334444543 23444443222 1222222343322 223222 33
Q ss_pred EEEEeCCCcc-cccCC-CCcceEEEccCCccc
Q 044563 248 ITGLISNQMD-ALIGQ-SLGKRVFKLPNPLYY 277 (290)
Q Consensus 248 Iv~~iGDq~s-Dl~G~-~~g~r~fkLPNPmY~ 277 (290)
-+..|||... |+.|. ..|-+++..=|+++-
T Consensus 187 e~vhIgD~l~nD~~gA~~~G~~ailv~~~~~~ 218 (237)
T KOG3085|consen 187 ECVHIGDLLENDYEGARNLGWHAILVDNSITA 218 (237)
T ss_pred HeEEecCccccccHhHHHcCCEEEEEccccch
Confidence 4568999887 69885 457777777666543
No 233
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=44.43 E-value=35 Score=32.97 Aligned_cols=61 Identities=21% Similarity=0.228 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhhCCCCCCCcEEEEecccccccChhhhhhccCC--CCccchHHHHHhhcCcCcHHHHHHHHHHHhCCC
Q 044563 110 NLSIQIVESYFNTLTPSYNGLDVVLMDIDDIFASSSKYSNLLIDR--VNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGW 187 (290)
Q Consensus 110 ~~v~~~A~~y~~~~~~~~~g~~AvVfDIDetLsn~~y~~~~~~G~--~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv 187 (290)
+.|.+.+..|-+.-.| .|++++|||=. .+ ++. +|++.| |...++++.|+++|+
T Consensus 24 ~ev~~v~~~~r~~~IP----~D~i~lDidy~--------~~-~~~Ft~d~~~F------------Pdp~~mv~~L~~~G~ 78 (332)
T cd06601 24 SDLEEVVEGYRDNNIP----LDGLHVDVDFQ--------DN-YRTFTTNGGGF------------PNPKEMFDNLHNKGL 78 (332)
T ss_pred HHHHHHHHHHHHcCCC----CceEEEcCchh--------cC-CCceeecCCCC------------CCHHHHHHHHHHCCC
Confidence 4455666666554333 36999998631 11 122 344333 445789999999999
Q ss_pred eEEEecCC
Q 044563 188 PVILLSRK 195 (290)
Q Consensus 188 ~V~~iSgR 195 (290)
+++++..-
T Consensus 79 klv~~i~P 86 (332)
T cd06601 79 KCSTNITP 86 (332)
T ss_pred eEEEEecC
Confidence 99987653
No 234
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=44.33 E-value=82 Score=32.54 Aligned_cols=86 Identities=12% Similarity=-0.051 Sum_probs=55.2
Q ss_pred CcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCc-ceeecCcccCc-chHHhhHHHHHHHHhcCC
Q 044563 169 HLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSS-LIMRLDNEMQM-DSREYLSRRRTILQKEGF 246 (290)
Q Consensus 169 apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~-LiLR~~~~~~~-~~~~yKs~~R~~i~~~GY 246 (290)
--|+...++|++++.+.|-+|++||.--=. -++-.+-|.+-||....- ..|.++---.+ +..-+|.-. +++.-.-
T Consensus 98 Lypn~~~~eL~e~ai~n~krVIlISDMYlp-s~Il~~~L~s~g~d~~nipiY~S~e~rl~KnSg~LFk~Vl--k~EnVd~ 174 (635)
T COG5610 98 LYPNKKNIELVEEAIKNEKRVILISDMYLP-SSILRTFLNSFGPDFNNIPIYMSSEFRLKKNSGNLFKAVL--KLENVDP 174 (635)
T ss_pred eeccccchHHHHHHHhCCCeEEEEecccCc-HHHHHHHHHhcCCCccCceeeecceeehhcccchHHHHHH--hhcCCCh
Confidence 446778999999999999999999986321 356667788999975543 44543221111 122344322 2333345
Q ss_pred eEEEEeCCCcc
Q 044563 247 HITGLISNQMD 257 (290)
Q Consensus 247 rIv~~iGDq~s 257 (290)
.=|+.+||||-
T Consensus 175 ~~w~H~GDN~~ 185 (635)
T COG5610 175 KKWIHCGDNWV 185 (635)
T ss_pred hheEEecCchh
Confidence 56899999984
No 235
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=44.29 E-value=80 Score=27.54 Aligned_cols=67 Identities=7% Similarity=0.003 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhhhCCCCCCCcEEEEecccc-cccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCC
Q 044563 109 LNLSIQIVESYFNTLTPSYNGLDVVLMDIDDI-FASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGW 187 (290)
Q Consensus 109 ~~~v~~~A~~y~~~~~~~~~g~~AvVfDIDet-Lsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv 187 (290)
...+.+||..+++.+...+. ...+++|++.. .... .-+.. .....+.+|++.++++|+
T Consensus 69 ~~~a~~qA~~f~~~~~~~~~-~~~~~lD~E~~~~~~~---------~~~~~-----------~~~~~~~~f~~~v~~~G~ 127 (191)
T cd06414 69 VAEAREEAEFVLRLIKGYKL-SYPVYYDLEDETQLGA---------GLSKD-----------QRTDIANAFCETIEAAGY 127 (191)
T ss_pred HHHHHHHHHHHHHHhhccCC-CCCeEEEeecCCCCCC---------CCCHH-----------HHHHHHHHHHHHHHHcCC
Confidence 45567888888887665422 22467899872 2110 01111 112346789999999999
Q ss_pred eEEEecCCC
Q 044563 188 PVILLSRKH 196 (290)
Q Consensus 188 ~V~~iSgR~ 196 (290)
++++-|++.
T Consensus 128 ~~~iY~~~~ 136 (191)
T cd06414 128 YPGIYANLS 136 (191)
T ss_pred CeEEEecHH
Confidence 999999976
No 236
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=44.29 E-value=14 Score=32.02 Aligned_cols=14 Identities=7% Similarity=0.354 Sum_probs=11.2
Q ss_pred cEEEEecccccccC
Q 044563 131 DVVLMDIDDIFASS 144 (290)
Q Consensus 131 ~AvVfDIDetLsn~ 144 (290)
.+||||+||||-+.
T Consensus 1 ~~viFDldgvL~d~ 14 (199)
T PRK09456 1 MLYIFDLGNVIVDI 14 (199)
T ss_pred CEEEEeCCCccccC
Confidence 47999999966664
No 237
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=43.90 E-value=1.5e+02 Score=23.54 Aligned_cols=65 Identities=15% Similarity=0.266 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCcccCcchHHhhHHHHHHHHh-cCCeEEEE
Q 044563 173 MFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQK-EGFHITGL 251 (290)
Q Consensus 173 p~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~-~GYrIv~~ 251 (290)
+..+++.+.+.++|++|+ -|+ .|.+.|++.|++ . ..+.+..+. +. ......|.+ .....|.|
T Consensus 12 ~~~~~~a~~l~~~G~~i~-AT~-------gTa~~L~~~Gi~-~-~~v~~~~~~-g~------~~i~~~i~~~g~idlVIn 74 (112)
T cd00532 12 AMLVDLAPKLSSDGFPLF-ATG-------GTSRVLADAGIP-V-RAVSKRHED-GE------PTVDAAIAEKGKFDVVIN 74 (112)
T ss_pred HHHHHHHHHHHHCCCEEE-ECc-------HHHHHHHHcCCc-e-EEEEecCCC-CC------cHHHHHHhCCCCEEEEEE
Confidence 567889999999999996 443 599999999986 1 223332221 11 123445655 56888888
Q ss_pred eCC
Q 044563 252 ISN 254 (290)
Q Consensus 252 iGD 254 (290)
+-|
T Consensus 75 ~~~ 77 (112)
T cd00532 75 LRD 77 (112)
T ss_pred cCC
Confidence 765
No 238
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=43.74 E-value=85 Score=29.83 Aligned_cols=79 Identities=15% Similarity=0.057 Sum_probs=47.0
Q ss_pred cCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCc-ceeecCcccCcchHHhhHHHHHHHHhcCCeE
Q 044563 170 LKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSS-LIMRLDNEMQMDSREYLSRRRTILQKEGFHI 248 (290)
Q Consensus 170 paip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~-LiLR~~~~~~~~~~~yKs~~R~~i~~~GYrI 248 (290)
.--||++.|++.|++.|.++.++|.+. ...+-.+-++.+|.+..+. ...+ ....+...-+...+..+.+.++.-
T Consensus 60 DGP~GA~aLa~aL~~lG~~~~ivtd~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~ 134 (291)
T PF14336_consen 60 DGPPGAAALARALQALGKEVVIVTDER--CAPVVKAAVRAAGLQGVDKVEIPP---FFPDDFAQAFLEADGLLKEPRPDL 134 (291)
T ss_pred CChHHHHHHHHHHHHcCCeEEEEECHH--HHHHHHHHHHHHhhCccccccccc---ccccchhhhHHHHhhccccCCCCE
Confidence 345899999999999999999999754 5566666666666542211 1111 001111122334455555666666
Q ss_pred EEEeC
Q 044563 249 TGLIS 253 (290)
Q Consensus 249 v~~iG 253 (290)
+..|.
T Consensus 135 lIaIE 139 (291)
T PF14336_consen 135 LIAIE 139 (291)
T ss_pred EEEeC
Confidence 65553
No 239
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=43.65 E-value=41 Score=31.60 Aligned_cols=24 Identities=29% Similarity=0.173 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhCCCeEEEecCCC
Q 044563 173 MFTLKLFMKLQVRGWPVILLSRKH 196 (290)
Q Consensus 173 p~~l~l~~~l~~~Gv~V~~iSgR~ 196 (290)
|.-.+++++|+++|++++++..-.
T Consensus 74 Pdp~~mi~~Lh~~G~k~v~~v~P~ 97 (292)
T cd06595 74 PDPEKLLQDLHDRGLKVTLNLHPA 97 (292)
T ss_pred CCHHHHHHHHHHCCCEEEEEeCCC
Confidence 455789999999999999988643
No 240
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=43.60 E-value=31 Score=29.10 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=23.7
Q ss_pred cHHHHHHHHHHHhCCCeEEEecCCCcc
Q 044563 172 HMFTLKLFMKLQVRGWPVILLSRKHEG 198 (290)
Q Consensus 172 ip~~l~l~~~l~~~Gv~V~~iSgR~e~ 198 (290)
.+.+++..+.++++|.+|+.||+.+++
T Consensus 92 t~~~~~~~~~a~~~g~~ii~iT~~~~s 118 (154)
T TIGR00441 92 SKNVLKAIEAAKDKGMKTITLAGKDGG 118 (154)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 457899999999999999999997654
No 241
>PF09049 SNN_transmemb: Stannin transmembrane; InterPro: IPR015135 This region consists of a single highly hydrophobic transmembrane helix that transverses the lipid bilayer at a 20 degree angle with respect to the membrane normal. It contains a conserved cysteine residue (Cys32) that, together with Cys34 found in the stannin unstructured linker domain, constitutes the putative trimethyltin-binding site that resides at the end of the transmembrane domain close to the lipid/solvent interface []. ; PDB: 1ZZA_A.
Probab=43.52 E-value=47 Score=21.33 Aligned_cols=22 Identities=32% Similarity=0.751 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 044563 29 GLITVGVLLITLLVTLAVMLQSC 51 (290)
Q Consensus 29 ~~~~~~~~~~~ll~~~~~~l~~c 51 (290)
+++|+++.||+ +.++.++++.|
T Consensus 11 gvvti~vilia-vaalg~licgc 32 (33)
T PF09049_consen 11 GVVTIIVILIA-VAALGALICGC 32 (33)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHH
T ss_pred cEEEehhHHHH-HHHHhhhheec
Confidence 56777776766 45777777776
No 242
>PRK13937 phosphoheptose isomerase; Provisional
Probab=43.49 E-value=30 Score=30.30 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=24.1
Q ss_pred cHHHHHHHHHHHhCCCeEEEecCCCcc
Q 044563 172 HMFTLKLFMKLQVRGWPVILLSRKHEG 198 (290)
Q Consensus 172 ip~~l~l~~~l~~~Gv~V~~iSgR~e~ 198 (290)
.+.+++..+.++++|.+++.||+.+++
T Consensus 119 t~~~~~~~~~ak~~g~~~I~iT~~~~s 145 (188)
T PRK13937 119 SPNVLAALEKARELGMKTIGLTGRDGG 145 (188)
T ss_pred cHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 577999999999999999999997654
No 243
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=43.08 E-value=36 Score=26.33 Aligned_cols=72 Identities=10% Similarity=0.120 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCcccCcchHHhhHHHHHHHHhcCCeEEEEeC
Q 044563 174 FTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGFHITGLIS 253 (290)
Q Consensus 174 ~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GYrIv~~iG 253 (290)
+++++.+.+.+.|++|+=- ..|.+-|+++|.+ ...+.-+.......+ -+....+.|.+.....|-|.=
T Consensus 1 e~~~~a~~l~~lG~~i~AT--------~gTa~~L~~~Gi~-~~~v~~~~~~~~~~~---g~~~i~~~i~~~~IdlVIn~~ 68 (95)
T PF02142_consen 1 EIVPLAKRLAELGFEIYAT--------EGTAKFLKEHGIE-VTEVVNKIGEGESPD---GRVQIMDLIKNGKIDLVINTP 68 (95)
T ss_dssp THHHHHHHHHHTTSEEEEE--------HHHHHHHHHTT---EEECCEEHSTG-GGT---HCHHHHHHHHTTSEEEEEEE-
T ss_pred CHHHHHHHHHHCCCEEEEC--------hHHHHHHHHcCCC-ceeeeeecccCccCC---chhHHHHHHHcCCeEEEEEeC
Confidence 4688999999999988743 3599999999996 223332222211111 011345566655566666665
Q ss_pred CCcc
Q 044563 254 NQMD 257 (290)
Q Consensus 254 Dq~s 257 (290)
+..+
T Consensus 69 ~~~~ 72 (95)
T PF02142_consen 69 YPFS 72 (95)
T ss_dssp -THH
T ss_pred CCCc
Confidence 5443
No 244
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=42.95 E-value=82 Score=29.91 Aligned_cols=41 Identities=17% Similarity=0.023 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCC
Q 044563 172 HMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGY 212 (290)
Q Consensus 172 ip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy 212 (290)
.|...+++++|+++|++|+++..-.-.....+-+-+++.||
T Consensus 72 FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~g~ 112 (317)
T cd06599 72 FPDPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEAGA 112 (317)
T ss_pred CCCHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHCCc
Confidence 34566999999999999998665432222234555666665
No 245
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=42.62 E-value=1.7e+02 Score=23.20 Aligned_cols=72 Identities=15% Similarity=0.128 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCcccCcchHHhhHHHHHHHHhcCCeEEEEe
Q 044563 173 MFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGFHITGLI 252 (290)
Q Consensus 173 p~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GYrIv~~i 252 (290)
+..+++.+.|.++|++|+- |. .|.+.|++.|++. ..+....+.... -+......|.+..+..|.|+
T Consensus 13 ~~~~~~a~~l~~~G~~i~a-T~-------gTa~~L~~~gi~~--~~v~~~~~~~~~----~~~~i~~~i~~~~idlVIn~ 78 (116)
T cd01423 13 PELLPTAQKLSKLGYKLYA-TE-------GTADFLLENGIPV--TPVAWPSEEPQN----DKPSLRELLAEGKIDLVINL 78 (116)
T ss_pred hhHHHHHHHHHHCCCEEEE-cc-------HHHHHHHHcCCCc--eEeeeccCCCCC----CchhHHHHHHcCCceEEEEC
Confidence 4577889999999999974 33 5999999999862 222221111110 01345566777779999997
Q ss_pred CCCccc
Q 044563 253 SNQMDA 258 (290)
Q Consensus 253 GDq~sD 258 (290)
=++-.+
T Consensus 79 ~~~~~~ 84 (116)
T cd01423 79 PSNRGK 84 (116)
T ss_pred CCCCCC
Confidence 554444
No 246
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=41.91 E-value=37 Score=30.93 Aligned_cols=29 Identities=14% Similarity=0.047 Sum_probs=24.5
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCC
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKH 196 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~ 196 (290)
+++..|.++..++.-+++|+.|++-|.-+
T Consensus 101 kahlypDav~~ik~wk~~g~~vyiYSSGS 129 (229)
T COG4229 101 KAHLYPDAVQAIKRWKALGMRVYIYSSGS 129 (229)
T ss_pred ccccCHhHHHHHHHHHHcCCcEEEEcCCC
Confidence 67888999999999999999998766543
No 247
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=41.53 E-value=34 Score=27.34 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=21.9
Q ss_pred cHHHHHHHHHHHhCCCeEEEecCCC
Q 044563 172 HMFTLKLFMKLQVRGWPVILLSRKH 196 (290)
Q Consensus 172 ip~~l~l~~~l~~~Gv~V~~iSgR~ 196 (290)
.+.+++.++.++++|.+|+.||+..
T Consensus 56 t~e~i~~~~~a~~~g~~iI~IT~~~ 80 (119)
T cd05017 56 TEETLSAVEQAKERGAKIVAITSGG 80 (119)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4578999999999999999999854
No 248
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=41.19 E-value=42 Score=28.31 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=34.1
Q ss_pred cHHHH-HHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCcccCcchHHhhHHHHHHHHhcCCeE
Q 044563 172 HMFTL-KLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGFHI 248 (290)
Q Consensus 172 ip~~l-~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GYrI 248 (290)
++|.| ...+-|...|+.||.+|-=+ -|+++.|.++- +..+++|++.||.|
T Consensus 76 ltGilasV~~pLsd~gigIFavStyd------------------tDhiLVr~~dL---------ekAv~~L~eaGhev 126 (128)
T COG3603 76 LTGILASVSQPLSDNGIGIFAVSTYD------------------TDHILVREEDL---------EKAVKALEEAGHEV 126 (128)
T ss_pred cchhhhhhhhhHhhCCccEEEEEecc------------------CceEEEehhhH---------HHHHHHHHHcCCcc
Confidence 34443 66788999999999999743 45777775442 23456677777765
No 249
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=40.94 E-value=14 Score=32.05 Aligned_cols=15 Identities=20% Similarity=0.496 Sum_probs=11.9
Q ss_pred CcEEEEecccccccC
Q 044563 130 LDVVLMDIDDIFASS 144 (290)
Q Consensus 130 ~~AvVfDIDetLsn~ 144 (290)
..+|+||+||||-..
T Consensus 4 ~k~i~FD~d~TL~d~ 18 (229)
T COG1011 4 IKAILFDLDGTLLDF 18 (229)
T ss_pred eeEEEEecCCccccc
Confidence 359999999977554
No 250
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=39.83 E-value=1.1e+02 Score=22.43 Aligned_cols=40 Identities=23% Similarity=0.219 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhCCCeEEEecCCCcc-------chHHHHHHHHhCCC
Q 044563 173 MFTLKLFMKLQVRGWPVILLSRKHEG-------QRNATTELLISAGY 212 (290)
Q Consensus 173 p~~l~l~~~l~~~Gv~V~~iSgR~e~-------~r~~T~~NL~~~Gy 212 (290)
+-.+++...+.+.|.+|.+|..++.- .+....+.|++.|.
T Consensus 9 ~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV 55 (80)
T PF00070_consen 9 FIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGV 55 (80)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCC
Confidence 34688999999999999999988642 24445555555554
No 251
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=39.51 E-value=1.1e+02 Score=25.60 Aligned_cols=74 Identities=14% Similarity=0.146 Sum_probs=40.3
Q ss_pred HHHHHHHHHhCCCeEEEecCCCccc-------hHHHHHHHHhCCCCCCCcceeecCcccCcchHHhhHHHHHHHHhcCCe
Q 044563 175 TLKLFMKLQVRGWPVILLSRKHEGQ-------RNATTELLISAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGFH 247 (290)
Q Consensus 175 ~l~l~~~l~~~Gv~V~~iSgR~e~~-------r~~T~~NL~~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GYr 247 (290)
+..+.+-++..||+|..+..|+|.. ...+.+.+.....+.++.++|-.. ...| . ..-+++.+.+.+
T Consensus 10 a~al~~la~~lg~~v~v~d~r~e~~~~~~~~~~~~~~~~~~~~~~~~~t~Vv~th~--h~~D----~-~~L~~~l~~~~~ 82 (136)
T PF13478_consen 10 ARALARLAALLGFRVTVVDPRPERFPEADEVICIPPDDILEDLEIDPNTAVVMTHD--HELD----A-EALEAALASPAR 82 (136)
T ss_dssp HHHHHHHHHHCTEEEEEEES-CCC-TTSSEEECSHHHHHHHHC-S-TT-EEE--S---CCCH----H-HHHHHHTTSS-S
T ss_pred HHHHHHHHHhCCCEEEEEcCCccccCCCCccEecChHHHHhccCCCCCeEEEEcCC--chhH----H-HHHHHHHcCCCC
Confidence 5678899999999999999998721 223334445667777776655321 1111 1 222334455788
Q ss_pred EEEEeCCC
Q 044563 248 ITGLISNQ 255 (290)
Q Consensus 248 Iv~~iGDq 255 (290)
=||.+|-+
T Consensus 83 YiG~lGS~ 90 (136)
T PF13478_consen 83 YIGLLGSR 90 (136)
T ss_dssp EEEESS-H
T ss_pred EEEeecCc
Confidence 88888754
No 252
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=38.98 E-value=51 Score=29.94 Aligned_cols=100 Identities=13% Similarity=0.119 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhhhCCCCCC-CcEEEEecc-----c-ccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHH
Q 044563 110 NLSIQIVESYFNTLTPSYNG-LDVVLMDID-----D-IFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKL 182 (290)
Q Consensus 110 ~~v~~~A~~y~~~~~~~~~g-~~AvVfDID-----e-tLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l 182 (290)
..+.++....+-++. .|| .++|.|.-+ + |+.|..-|.....+.+ ..|..|=....++++..+++.|..-
T Consensus 24 Q~~~Er~lalA~~~D--dDG~i~v~~Fs~~~~~~~~vt~~~~~~~v~~~~~~~--~~~~~~G~t~y~~vm~~v~~~y~~~ 99 (200)
T PF10138_consen 24 QRVVERILALAAQFD--DDGEIDVWFFSTEFDRLPDVTLDNYEGYVDELHAGL--PDWGRMGGTNYAPVMEDVLDHYFKR 99 (200)
T ss_pred HHHHHHHHHHHhhcC--CCCceEEEEeCCCCCcCCCcCHHHHHHHHHHHhccc--cccCCCCCcchHHHHHHHHHHHhhc
Confidence 334445555544433 355 689999743 4 4444333322111000 0121111223456777777777744
Q ss_pred Hh--CCCeEEEecCCCccchHHHHHHHHhC-CCC
Q 044563 183 QV--RGWPVILLSRKHEGQRNATTELLISA-GYR 213 (290)
Q Consensus 183 ~~--~Gv~V~~iSgR~e~~r~~T~~NL~~~-Gy~ 213 (290)
.. .-.-|+|+|.=.-..+..+.+-|+++ +.|
T Consensus 100 ~~~~~P~~VlFiTDG~~~~~~~~~~~i~~as~~p 133 (200)
T PF10138_consen 100 EPSDAPALVLFITDGGPDDRRAIEKLIREASDEP 133 (200)
T ss_pred CCCCCCeEEEEEecCCccchHHHHHHHHhccCCC
Confidence 33 24678999987767788888888877 443
No 253
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=38.56 E-value=42 Score=30.18 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=28.4
Q ss_pred cHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCC
Q 044563 172 HMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYR 213 (290)
Q Consensus 172 ip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~ 213 (290)
-++.+++.+.|.++|++|+- |+ .|.+.|+++|.+
T Consensus 10 K~~l~~lAk~L~~lGf~I~A-T~-------GTAk~L~e~GI~ 43 (187)
T cd01421 10 KTGLVEFAKELVELGVEILS-TG-------GTAKFLKEAGIP 43 (187)
T ss_pred cccHHHHHHHHHHCCCEEEE-cc-------HHHHHHHHcCCe
Confidence 35789999999999999973 33 499999999985
No 254
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=38.41 E-value=1.3e+02 Score=23.88 Aligned_cols=41 Identities=0% Similarity=-0.117 Sum_probs=31.0
Q ss_pred HHHHHHHHHH-HhCCCeEEEecCCCccchHHHHHHHHhCC-CC
Q 044563 173 MFTLKLFMKL-QVRGWPVILLSRKHEGQRNATTELLISAG-YR 213 (290)
Q Consensus 173 p~~l~l~~~l-~~~Gv~V~~iSgR~e~~r~~T~~NL~~~G-y~ 213 (290)
..+.+.++++ .+..+.|++||.+-...-..+++.+.... .|
T Consensus 30 ee~~~~l~~l~~~~d~gII~Ite~~~~~i~e~i~~~~~~~~~P 72 (100)
T PRK02228 30 EKLDEAVEEVLEDDDVGILVMHDDDLEKLPRRLRRTLEESVEP 72 (100)
T ss_pred HHHHHHHHHHhhCCCEEEEEEehhHhHhhHHHHHHHHhcCCCC
Confidence 3477788876 78889999999997766677888855544 44
No 255
>cd06523 GH25_PlyB-like PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis. PlyB has an N-terminal glycosyl hydrolase family 25 (GH25) catalytic domain and a C-terminal bacterial SH3-like domain, SH3b. Both domains are required for effective catalytic activity. Endolysins are produced by bacteriophages at the end of their life cycle and participate in lysing the bacterial cell in order to release the newly formed progeny. Endolysins (also referred to as endo-N-acetylmuramidases or peptidoglycan hydrolases) degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=37.99 E-value=97 Score=26.81 Aligned_cols=59 Identities=14% Similarity=0.064 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhhhCCCCCCCcEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCC-
Q 044563 109 LNLSIQIVESYFNTLTPSYNGLDVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGW- 187 (290)
Q Consensus 109 ~~~v~~~A~~y~~~~~~~~~g~~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv- 187 (290)
...+.++|..+++.+.. ++..+++|+++.... .....+..|++.++++|.
T Consensus 66 ~~~a~~eA~~f~~~~~~---~~~~~~lD~E~~~~~--------------------------~~~~~~~~f~~~v~~~g~~ 116 (177)
T cd06523 66 TADAKAEARDFYNRANK---KPTFYVLDVEVTSMS--------------------------DMNAGVQAFISELRRLGAK 116 (177)
T ss_pred HHHHHHHHHHHHHHhcC---CCceEEEeeccCCcc--------------------------hHHHHHHHHHHHHHHccCC
Confidence 45677888888776554 445789999972110 012346789999999987
Q ss_pred eEEEecCCC
Q 044563 188 PVILLSRKH 196 (290)
Q Consensus 188 ~V~~iSgR~ 196 (290)
++++-|++.
T Consensus 117 ~~~lYt~~~ 125 (177)
T cd06523 117 KVGLYIGHH 125 (177)
T ss_pred cEEEEchHH
Confidence 566777764
No 256
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=37.91 E-value=33 Score=24.70 Aligned_cols=14 Identities=36% Similarity=0.672 Sum_probs=9.1
Q ss_pred HHHHHHhhhhcCCC
Q 044563 43 TLAVMLQSCQNRSS 56 (290)
Q Consensus 43 ~~~~~l~~c~~~~~ 56 (290)
.+++.|++||....
T Consensus 7 ~l~l~La~CqT~D~ 20 (55)
T PRK13859 7 CLALALAGCQTNDT 20 (55)
T ss_pred HHHHHHHhccccCc
Confidence 34456789997653
No 257
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=37.52 E-value=76 Score=30.09 Aligned_cols=151 Identities=15% Similarity=0.048 Sum_probs=84.2
Q ss_pred HHHHhhhhh---hhhHHHHHHHHHHHHHHHh----hhCCCC-CCCcEEEEeccccccc-Chh--hhhhccCCCCccchHH
Q 044563 94 GLAIRYIKE---GQFARDLNLSIQIVESYFN----TLTPSY-NGLDVVLMDIDDIFAS-SSK--YSNLLIDRVNVRGYIE 162 (290)
Q Consensus 94 ~~v~~Y~~s---gqY~~D~~~v~~~A~~y~~----~~~~~~-~g~~AvVfDIDetLsn-~~y--~~~~~~G~~~~~~w~~ 162 (290)
.|++.|-.. +....|+..+++....-+. ...... +..--|.||=|.+|-+ ... |+.++ -+.|.+
T Consensus 77 ~Yl~af~v~LFLSan~~DV~~Ai~~G~~Aa~v~~~~~~~~~~~~qlRIAFDgDaVLfsDesE~vy~~~G-----L~~F~~ 151 (264)
T PF06189_consen 77 PYLKAFNVDLFLSANEDDVQEAIDAGIPAATVLPSPPDDDESDDQLRIAFDGDAVLFSDESERVYQEQG-----LEAFHE 151 (264)
T ss_pred HHHHHhCCceEeeCCHHHHHHHHHcCCCcEEeecCCCCCCCCCCceEEEEcCCeEeecCcchHhHHhcc-----HHHHHH
Confidence 455554321 2445788877776443321 111111 2234799999995544 322 33322 122434
Q ss_pred HHHhhcCcC-----cHHHHHHHHHHHhC------CCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCcccCcchH
Q 044563 163 CIEEAKHLK-----HMFTLKLFMKLQVR------GWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDNEMQMDSR 231 (290)
Q Consensus 163 Wv~~~~apa-----ip~~l~l~~~l~~~------Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~~~~~~~~ 231 (290)
-+......| +..-++-+.+++++ =+.+.+||.|...-.+-.++.|++-|..--+.++|=+-+
T Consensus 152 ~E~~~a~~Pl~~GP~~~fl~~L~~lQ~~~~~~~~piRtalVTAR~apah~RvI~TLr~Wgv~vDEafFLgG~~------- 224 (264)
T PF06189_consen 152 HEKENADKPLPEGPFKDFLKKLSKLQKKFPPENSPIRTALVTARSAPAHERVIRTLRSWGVRVDEAFFLGGLP------- 224 (264)
T ss_pred HHHHhccCCCcCCCHHHHHHHHHHHHHhcCCCCCceEEEEEEcCCCchhHHHHHHHHHcCCcHhHHHHhCCCc-------
Confidence 333322222 23333444444443 468999999987666778899999999644566665332
Q ss_pred HhhHHHHHHHHhcCCeEEEEeCCCcccccCCC
Q 044563 232 EYLSRRRTILQKEGFHITGLISNQMDALIGQS 263 (290)
Q Consensus 232 ~yKs~~R~~i~~~GYrIv~~iGDq~sDl~G~~ 263 (290)
|...-+. ++--..++||..-+.+..
T Consensus 225 --K~~vL~~-----~~phIFFDDQ~~H~~~a~ 249 (264)
T PF06189_consen 225 --KGPVLKA-----FRPHIFFDDQDGHLESAS 249 (264)
T ss_pred --hhHHHHh-----hCCCEeecCchhhhhHhh
Confidence 4444333 444568999999887654
No 258
>PF13701 DDE_Tnp_1_4: Transposase DDE domain group 1
Probab=37.40 E-value=27 Score=35.14 Aligned_cols=85 Identities=11% Similarity=0.028 Sum_probs=44.8
Q ss_pred CCcEEEEecccccccChhhhhh-----ccC--CCCc----cchHHH-----HHhhcCcCcHHHHHHHHH----HHhCCCe
Q 044563 129 GLDVVLMDIDDIFASSSKYSNL-----LID--RVNV----RGYIEC-----IEEAKHLKHMFTLKLFMK----LQVRGWP 188 (290)
Q Consensus 129 g~~AvVfDIDetLsn~~y~~~~-----~~G--~~~~----~~w~~W-----v~~~~apaip~~l~l~~~----l~~~Gv~ 188 (290)
.|..||+|||.|.++++-.++. ++| +|.| ..+..| -..|+..+-.++++|++. ++++.-.
T Consensus 138 ~~~~i~LDiD~T~~~~~G~Qe~~~~n~y~g~~gY~PL~~f~g~~G~~l~a~LRpGn~~sa~g~~~fL~~~l~~lr~~~~~ 217 (448)
T PF13701_consen 138 PPKEIVLDIDSTVDDVHGEQEGAVFNTYYGEDGYHPLVAFDGQTGYLLAAELRPGNVHSAKGAAEFLKRVLRRLRQRWPD 217 (448)
T ss_pred ccceEEEecccccccchhhcccccccccCCCcccccceeccCCCCceEEEEccCCCCChHHHHHHHHHHHHHHHhhhCcc
Confidence 3569999999988776432211 012 1322 012222 234666666666666555 3333221
Q ss_pred -EEEecCCCccchHHHHHHHHhCCCC
Q 044563 189 -VILLSRKHEGQRNATTELLISAGYR 213 (290)
Q Consensus 189 -V~~iSgR~e~~r~~T~~NL~~~Gy~ 213 (290)
-+++=+=+.-.+....+++.+.|..
T Consensus 218 ~~ILvR~DSgF~~~el~~~ce~~g~~ 243 (448)
T PF13701_consen 218 TRILVRGDSGFASPELMDWCEAEGVD 243 (448)
T ss_pred ceEEEEecCccCcHHHHHHHHhCCCe
Confidence 2344444445567777777777763
No 259
>PRK12342 hypothetical protein; Provisional
Probab=37.10 E-value=2.9e+02 Score=25.80 Aligned_cols=84 Identities=18% Similarity=0.131 Sum_probs=45.9
Q ss_pred CcHHHHHHHHHHHhCCCeEEEecCCCccchHH-HHHHHHhCCCCCCCcceeecCc-ccCcchHHhhHHHHHHHHhcCCeE
Q 044563 171 KHMFTLKLFMKLQVRGWPVILLSRKHEGQRNA-TTELLISAGYRGWSSLIMRLDN-EMQMDSREYLSRRRTILQKEGFHI 248 (290)
Q Consensus 171 aip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~-T~~NL~~~Gy~~~d~LiLR~~~-~~~~~~~~yKs~~R~~i~~~GYrI 248 (290)
|+..++++ ++.|.+|..||==+..-.+. ..+.-.+.|- |+.++=.+. ..+.|+..-=..--+.|++.||.+
T Consensus 40 AlE~AlrL----k~~g~~Vtvls~Gp~~a~~~~l~r~alamGa---D~avli~d~~~~g~D~~ata~~La~~i~~~~~DL 112 (254)
T PRK12342 40 AIEAASQL----ATDGDEIAALTVGGSLLQNSKVRKDVLSRGP---HSLYLVQDAQLEHALPLDTAKALAAAIEKIGFDL 112 (254)
T ss_pred HHHHHHHH----hhcCCEEEEEEeCCChHhHHHHHHHHHHcCC---CEEEEEecCccCCCCHHHHHHHHHHHHHHhCCCE
Confidence 34455554 34789999998766543333 3455556665 344433222 122222111112233455568998
Q ss_pred EEEeCCCcccccCC
Q 044563 249 TGLISNQMDALIGQ 262 (290)
Q Consensus 249 v~~iGDq~sDl~G~ 262 (290)
| ..|.|-.|-..+
T Consensus 113 V-l~G~~s~D~~tg 125 (254)
T PRK12342 113 L-LFGEGSGDLYAQ 125 (254)
T ss_pred E-EEcCCcccCCCC
Confidence 8 679999998654
No 260
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=36.99 E-value=1.9e+02 Score=22.71 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCC
Q 044563 173 MFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYR 213 (290)
Q Consensus 173 p~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~ 213 (290)
+..+.+.+.+.++|++|+- |. .|.+.|++.|++
T Consensus 13 ~~~~~~~~~l~~~G~~l~a-T~-------gT~~~l~~~gi~ 45 (110)
T cd01424 13 PEAVEIAKRLAELGFKLVA-TE-------GTAKYLQEAGIP 45 (110)
T ss_pred hHHHHHHHHHHHCCCEEEE-ch-------HHHHHHHHcCCe
Confidence 3567888889999999973 32 488899999885
No 261
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=36.70 E-value=43 Score=24.39 Aligned_cols=22 Identities=23% Similarity=0.182 Sum_probs=19.9
Q ss_pred cHHHHHHHHHHHhCCCeEEEec
Q 044563 172 HMFTLKLFMKLQVRGWPVILLS 193 (290)
Q Consensus 172 ip~~l~l~~~l~~~Gv~V~~iS 193 (290)
-+.++++.+.++++|.+++.||
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 3668999999999999999999
No 262
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=35.86 E-value=67 Score=29.56 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhCCCeEEEecCCCccchHHHH----HHHHhCCCCC
Q 044563 173 MFTLKLFMKLQVRGWPVILLSRKHEGQRNATT----ELLISAGYRG 214 (290)
Q Consensus 173 p~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~----~NL~~~Gy~~ 214 (290)
|...+++++|+++|++|+++....- |+-=. +.+.+.|+.+
T Consensus 66 pdp~~~i~~l~~~g~~~~~~~~P~v--~~w~~~~~~~~~~~~Gvdg 109 (265)
T cd06589 66 PNPKSMIDELHDNGVKLVLWIDPYI--REWWAEVVKKLLVSLGVDG 109 (265)
T ss_pred CCHHHHHHHHHHCCCEEEEEeChhH--HHHHHHHHHHhhccCCCCE
Confidence 4456899999999999999988643 32222 2335568763
No 263
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=35.83 E-value=17 Score=33.51 Aligned_cols=26 Identities=8% Similarity=0.022 Sum_probs=20.7
Q ss_pred cHHHHHHHHHHHhCCCeEEEecCCCcc
Q 044563 172 HMFTLKLFMKLQVRGWPVILLSRKHEG 198 (290)
Q Consensus 172 ip~~l~l~~~l~~~Gv~V~~iSgR~e~ 198 (290)
.+++.+.++.|+++|. +++.||.+..
T Consensus 145 y~~i~~~l~~L~~~g~-~~i~Tn~d~~ 170 (279)
T TIGR01452 145 YAKLREACAHLREPGC-LFVATNRDPW 170 (279)
T ss_pred HHHHHHHHHHHhcCCC-EEEEeCCCCC
Confidence 4567788888988897 7899998753
No 264
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=35.61 E-value=1.8e+02 Score=27.62 Aligned_cols=97 Identities=15% Similarity=0.204 Sum_probs=61.4
Q ss_pred hhhHHHHhhhhhhhhHHHHHHHHHHHHHHHhhhCCCCCCCcEEEEeccc-ccccChhhhhhccCC--CCccchHHHHHhh
Q 044563 91 ICRGLAIRYIKEGQFARDLNLSIQIVESYFNTLTPSYNGLDVVLMDIDD-IFASSSKYSNLLIDR--VNVRGYIECIEEA 167 (290)
Q Consensus 91 ~C~~~v~~Y~~sgqY~~D~~~v~~~A~~y~~~~~~~~~g~~AvVfDIDe-tLsn~~y~~~~~~G~--~~~~~w~~Wv~~~ 167 (290)
.|+-.+.++.+.++|.+.++....++.+-+ .||.||..--- .|.-.|. |. -+|+.-
T Consensus 218 r~kVEl~~gTeddeYLrkl~r~l~~sl~ef--------~Pd~VvYNAGTDiLeGDpL------G~L~ISp~Gi------- 276 (324)
T KOG1344|consen 218 RCKVELRNGTEDDEYLRKLKRCLMQSLAEF--------RPDMVVYNAGTDILEGDPL------GNLAISPEGI------- 276 (324)
T ss_pred hheeeeecCCCchHHHHHHHHHHHHHHHhh--------CCcEEEEeCCCccccCCCC------CCeeeccccc-------
Confidence 466678889999999999998887776543 35677654332 3333221 11 223211
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCC-----CccchHHHHHHHHhCCC
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRK-----HEGQRNATTELLISAGY 212 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR-----~e~~r~~T~~NL~~~Gy 212 (290)
+.---..++..+++|+.|+.+|.- +...-+..+.||..+|.
T Consensus 277 ----~~RDelVFr~~R~~~iPvvMltSGGY~K~sArvIaDSI~NL~~qGL 322 (324)
T KOG1344|consen 277 ----IERDELVFRTFRALGIPVVMLTSGGYLKASARVIADSIVNLRLQGL 322 (324)
T ss_pred ----chhhHHHHHHHHHcCCcEEEEecCceehhhhhhhHHHHHhHhhhcc
Confidence 111123678889999999977753 23344678899998885
No 265
>COG2237 Predicted membrane protein [Function unknown]
Probab=35.03 E-value=51 Score=32.60 Aligned_cols=30 Identities=17% Similarity=0.325 Sum_probs=25.6
Q ss_pred cCcCcHHHHHHHHHHHhCC--CeEEEecCCCc
Q 044563 168 KHLKHMFTLKLFMKLQVRG--WPVILLSRKHE 197 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~G--v~V~~iSgR~e 197 (290)
++-++-+++++|++|+++| ++|.++||-+.
T Consensus 46 D~Nalf~alkiydeLk~~geDveIA~vsG~~~ 77 (364)
T COG2237 46 DVNALFAALKIYDELKAKGEDVEIAVVSGDKD 77 (364)
T ss_pred cHHHHHHHHHHHHHHhccCCceEEEEEecCCC
Confidence 4557889999999999999 68999999654
No 266
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=34.96 E-value=24 Score=30.00 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=16.8
Q ss_pred HHHHHHHhcCCeEEEEeCCCcc
Q 044563 236 RRRTILQKEGFHITGLISNQMD 257 (290)
Q Consensus 236 ~~R~~i~~~GYrIv~~iGDq~s 257 (290)
+.-++|.+.|+++++.-||+..
T Consensus 134 ~~l~~L~~~Gi~~~i~TGD~~~ 155 (215)
T PF00702_consen 134 EALQELKEAGIKVAILTGDNES 155 (215)
T ss_dssp HHHHHHHHTTEEEEEEESSEHH
T ss_pred hhhhhhhccCcceeeeeccccc
Confidence 3445677889999999999644
No 267
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=34.90 E-value=1.4e+02 Score=27.81 Aligned_cols=18 Identities=6% Similarity=-0.221 Sum_probs=12.6
Q ss_pred hHHHHHHHHhcCCeEEEE
Q 044563 234 LSRRRTILQKEGFHITGL 251 (290)
Q Consensus 234 Ks~~R~~i~~~GYrIv~~ 251 (290)
....++.+.+.||++|+-
T Consensus 188 n~~~~~~l~~~G~~~v~W 205 (268)
T TIGR02873 188 NDNVVQIAADLQMGTIMW 205 (268)
T ss_pred CHHHHHHHHHCCCeEEEe
Confidence 345666677889998863
No 268
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=34.86 E-value=74 Score=30.71 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhCCC--eEEEecCCCccchHHHHHHHHhCCCC
Q 044563 174 FTLKLFMKLQVRGW--PVILLSRKHEGQRNATTELLISAGYR 213 (290)
Q Consensus 174 ~~l~l~~~l~~~Gv--~V~~iSgR~e~~r~~T~~NL~~~Gy~ 213 (290)
.++++++.++..|- +||..=.||..+-..|.+.|+++|.+
T Consensus 131 ~v~~~l~~A~~~~k~~~V~VtESRP~~eG~~~ak~L~~~gI~ 172 (301)
T COG1184 131 TVLEVLKTAADRGKRFKVIVTESRPRGEGRIMAKELRQSGIP 172 (301)
T ss_pred HHHHHHHHhhhcCCceEEEEEcCCCcchHHHHHHHHHHcCCc
Confidence 37889999999985 99999999999999999999999976
No 269
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=34.69 E-value=42 Score=27.80 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhCCCeEEEecC
Q 044563 173 MFTLKLFMKLQVRGWPVILLSR 194 (290)
Q Consensus 173 p~~l~l~~~l~~~Gv~V~~iSg 194 (290)
|.+++..++++++|.+|+-|||
T Consensus 117 ~~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 117 PNVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeC
Confidence 6789999999999999999986
No 270
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=34.61 E-value=93 Score=29.35 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhCCCeEEEecCC
Q 044563 173 MFTLKLFMKLQVRGWPVILLSRK 195 (290)
Q Consensus 173 p~~l~l~~~l~~~Gv~V~~iSgR 195 (290)
|...+++++|+++|+++.++..=
T Consensus 70 Pdp~~mi~~l~~~G~k~~l~i~P 92 (303)
T cd06592 70 PDPKGMIDQLHDLGFRVTLWVHP 92 (303)
T ss_pred CCHHHHHHHHHHCCCeEEEEECC
Confidence 44678999999999999886553
No 271
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=34.10 E-value=2e+02 Score=22.68 Aligned_cols=27 Identities=15% Similarity=0.105 Sum_probs=22.0
Q ss_pred CCCeEEEecCCCccchHHHHHHHHhCCC
Q 044563 185 RGWPVILLSRKHEGQRNATTELLISAGY 212 (290)
Q Consensus 185 ~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy 212 (290)
.|+.|.+.|+-.-.. ...++.|.++|.
T Consensus 75 ~~~~i~~~t~~~~~~-~~~l~~l~~~~~ 101 (166)
T PF04055_consen 75 RGIRISINTNGTLLD-EELLDELKKLGV 101 (166)
T ss_dssp TTEEEEEEEESTTHC-HHHHHHHHHTTC
T ss_pred cccceeeeccccchh-HHHHHHHHhcCc
Confidence 489999999876544 788999999984
No 272
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=33.49 E-value=57 Score=31.01 Aligned_cols=61 Identities=20% Similarity=0.203 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhhhCCCCCCCcEEEEecccccccChhhhhhccCC--CCccchHHHHHhhcCcCcHHHHHHHHHHHhCC
Q 044563 109 LNLSIQIVESYFNTLTPSYNGLDVVLMDIDDIFASSSKYSNLLIDR--VNVRGYIECIEEAKHLKHMFTLKLFMKLQVRG 186 (290)
Q Consensus 109 ~~~v~~~A~~y~~~~~~~~~g~~AvVfDIDetLsn~~y~~~~~~G~--~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~G 186 (290)
-+.+.+.+..+-+.-.| -|++++|+|=+= . ++. +|++.| |...++++.|+++|
T Consensus 23 ~~~v~~~~~~~~~~~iP----~d~i~lD~~~~~-~--------~~~f~~d~~~F------------Pdp~~~i~~l~~~g 77 (317)
T cd06600 23 QDKVVEVVDIMQKEGFP----YDVVFLDIHYMD-S--------YRLFTWDPYRF------------PEPKKLIDELHKRN 77 (317)
T ss_pred HHHHHHHHHHHHHcCCC----cceEEEChhhhC-C--------CCceeechhcC------------CCHHHHHHHHHHCC
Confidence 34455555555543333 368999986531 0 111 344333 34468999999999
Q ss_pred CeEEEecC
Q 044563 187 WPVILLSR 194 (290)
Q Consensus 187 v~V~~iSg 194 (290)
++|+++..
T Consensus 78 ~k~~~~~~ 85 (317)
T cd06600 78 VKLVTIVD 85 (317)
T ss_pred CEEEEEee
Confidence 99987754
No 273
>PRK13938 phosphoheptose isomerase; Provisional
Probab=33.01 E-value=55 Score=29.24 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=23.8
Q ss_pred cHHHHHHHHHHHhCCCeEEEecCCCcc
Q 044563 172 HMFTLKLFMKLQVRGWPVILLSRKHEG 198 (290)
Q Consensus 172 ip~~l~l~~~l~~~Gv~V~~iSgR~e~ 198 (290)
-+.+++.++.++++|.+|+.||+.++.
T Consensus 126 t~~vi~a~~~Ak~~G~~vI~iT~~~~s 152 (196)
T PRK13938 126 SMSVLRAAKTARELGVTVVAMTGESGG 152 (196)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 467999999999999999999997754
No 274
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=32.49 E-value=57 Score=29.08 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhCCCeEEEecCCCccc
Q 044563 173 MFTLKLFMKLQVRGWPVILLSRKHEGQ 199 (290)
Q Consensus 173 p~~l~l~~~l~~~Gv~V~~iSgR~e~~ 199 (290)
+.+++-++.++++|.+|+-+|||+..+
T Consensus 123 ~nVl~Ai~~Ak~~gm~vI~ltG~~GG~ 149 (176)
T COG0279 123 KNVLKAIEAAKEKGMTVIALTGKDGGK 149 (176)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCCcc
Confidence 568999999999999999999999764
No 275
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=32.23 E-value=30 Score=32.62 Aligned_cols=20 Identities=25% Similarity=0.429 Sum_probs=16.2
Q ss_pred CCCCcEEEEecccccccChh
Q 044563 127 YNGLDVVLMDIDDIFASSSK 146 (290)
Q Consensus 127 ~~g~~AvVfDIDetLsn~~y 146 (290)
..+|+-+|+|+||||-.+.+
T Consensus 86 ~~~kk~lVLDLDeTLvHss~ 105 (262)
T KOG1605|consen 86 TVGRKTLVLDLDETLVHSSL 105 (262)
T ss_pred cCCCceEEEeCCCccccccc
Confidence 46788999999998776653
No 276
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=32.01 E-value=87 Score=27.48 Aligned_cols=66 Identities=12% Similarity=0.091 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhhhCCCCCC-CcEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCC
Q 044563 108 DLNLSIQIVESYFNTLTPSYNG-LDVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRG 186 (290)
Q Consensus 108 D~~~v~~~A~~y~~~~~~~~~g-~~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~G 186 (290)
+..++.++|..+++.++..+-. ...+++|+++.-.++ .+.. ...+..|++.+++.|
T Consensus 65 ~~~~a~~eA~~f~~~~~~~~l~~~~~~~lDvE~~~~~~------------~~~~-----------~~~~~~f~~~v~~~G 121 (196)
T cd06415 65 SVSQAKYEADYFLNSAQQAGLPKGSYLALDYEQGSGNS------------KAAN-----------TSAILAFMDTIKDAG 121 (196)
T ss_pred CHHHHHHHHHHHHHHhhhcCCCCCCEEEEEEecCCCCC------------HHHH-----------HHHHHHHHHHHHHhC
Confidence 3456778888888766542211 236889999721111 1001 123678999999999
Q ss_pred CeEEEecCCC
Q 044563 187 WPVILLSRKH 196 (290)
Q Consensus 187 v~V~~iSgR~ 196 (290)
+++.+=|++.
T Consensus 122 ~~~~iYt~~~ 131 (196)
T cd06415 122 YKPMLYSYKP 131 (196)
T ss_pred CCcEEEecHH
Confidence 9999999985
No 277
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=31.98 E-value=1.1e+02 Score=30.05 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=26.0
Q ss_pred cCcCcHHHHHHHHHHHhCC--CeEEEecCCCc
Q 044563 168 KHLKHMFTLKLFMKLQVRG--WPVILLSRKHE 197 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~G--v~V~~iSgR~e 197 (290)
+.-++-+++++|++|++.| ++|..+||-++
T Consensus 46 D~N~if~avkiydeL~~~GedveVA~VsG~~~ 77 (344)
T PF04123_consen 46 DVNAIFGAVKIYDELKAEGEDVEVAVVSGSPD 77 (344)
T ss_pred cHHHHHHHHHHHHHHHhcCCCeEEEEEECCCC
Confidence 4457889999999999999 68999999876
No 278
>PRK13936 phosphoheptose isomerase; Provisional
Probab=31.70 E-value=59 Score=28.72 Aligned_cols=27 Identities=15% Similarity=0.215 Sum_probs=23.5
Q ss_pred cHHHHHHHHHHHhCCCeEEEecCCCcc
Q 044563 172 HMFTLKLFMKLQVRGWPVILLSRKHEG 198 (290)
Q Consensus 172 ip~~l~l~~~l~~~Gv~V~~iSgR~e~ 198 (290)
.+.+++..+.++++|.+|+-||+.+.+
T Consensus 124 t~~~~~~~~~ak~~g~~iI~IT~~~~s 150 (197)
T PRK13936 124 SANVIQAIQAAHEREMHVVALTGRDGG 150 (197)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 456899999999999999999997654
No 279
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=30.92 E-value=63 Score=28.91 Aligned_cols=27 Identities=15% Similarity=0.117 Sum_probs=23.6
Q ss_pred cHHHHHHHHHHHhCCCeEEEecCCCcc
Q 044563 172 HMFTLKLFMKLQVRGWPVILLSRKHEG 198 (290)
Q Consensus 172 ip~~l~l~~~l~~~Gv~V~~iSgR~e~ 198 (290)
.+.+++..+.++++|.+|+-|||.+..
T Consensus 122 s~~v~~a~~~Ak~~G~~vI~IT~~~~s 148 (196)
T PRK10886 122 SRDIVKAVEAAVTRDMTIVALTGYDGG 148 (196)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 466899999999999999999998753
No 280
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=30.53 E-value=3.1e+02 Score=23.99 Aligned_cols=41 Identities=17% Similarity=0.170 Sum_probs=30.6
Q ss_pred CcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCC
Q 044563 171 KHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYR 213 (290)
Q Consensus 171 aip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~ 213 (290)
...-+.++++.+.++|.+|||+-++++ .-+.+.++|++. ||
T Consensus 33 G~dl~~~l~~~~~~~~~~vfllG~~~~-v~~~~~~~l~~~-yP 73 (177)
T TIGR00696 33 GPDLMEELCQRAGKEKLPIFLYGGKPD-VLQQLKVKLIKE-YP 73 (177)
T ss_pred hHHHHHHHHHHHHHcCCeEEEECCCHH-HHHHHHHHHHHH-CC
Confidence 344567888889999999999988775 345667777765 55
No 281
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=30.50 E-value=60 Score=30.00 Aligned_cols=27 Identities=7% Similarity=0.037 Sum_probs=24.2
Q ss_pred cHHHHHHHHHHHhCCCeEEEecCCCcc
Q 044563 172 HMFTLKLFMKLQVRGWPVILLSRKHEG 198 (290)
Q Consensus 172 ip~~l~l~~~l~~~Gv~V~~iSgR~e~ 198 (290)
.+.++++.+.++++|.+|+.||+.+..
T Consensus 200 t~~~~~~~~~ak~~g~~ii~IT~~~~s 226 (292)
T PRK11337 200 TSDVIEAVELAKKNGAKIICITNSYHS 226 (292)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 467999999999999999999998764
No 282
>PF14770 TMEM18: Transmembrane protein 18
Probab=30.34 E-value=1.1e+02 Score=25.64 Aligned_cols=41 Identities=27% Similarity=0.492 Sum_probs=31.4
Q ss_pred HhhhcccccCCCCceEeehHHHHHHHHHHHHHHHHHHHHhhhh
Q 044563 10 RQLSSQSLSSRGGSVIFIGGLITVGVLLITLLVTLAVMLQSCQ 52 (290)
Q Consensus 10 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ll~~~~~~l~~c~ 52 (290)
+.+|.|--=+.+| +||+.+-++.+|+.++++....+...|+
T Consensus 67 ~~Fs~qnYFDs~G--~Fisvv~s~PlLl~~~ii~~~~l~~~~~ 107 (123)
T PF14770_consen 67 RSFSKQNYFDSSG--VFISVVFSAPLLLNCLIILVNWLYQLCS 107 (123)
T ss_pred HHHhhccCcCCCC--eeehHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 5566665555566 9999999999999998877777776664
No 283
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=30.18 E-value=2.1e+02 Score=28.72 Aligned_cols=77 Identities=18% Similarity=0.272 Sum_probs=46.0
Q ss_pred hHHHHhhhhhhhhHHHHHHHHHHHHHHHhhhCCCCCCCcEEEEeccc--ccccChhhhhhccCCCCc-cchHHHHHhhcC
Q 044563 93 RGLAIRYIKEGQFARDLNLSIQIVESYFNTLTPSYNGLDVVLMDIDD--IFASSSKYSNLLIDRVNV-RGYIECIEEAKH 169 (290)
Q Consensus 93 ~~~v~~Y~~sgqY~~D~~~v~~~A~~y~~~~~~~~~g~~AvVfDIDe--tLsn~~y~~~~~~G~~~~-~~w~~Wv~~~~a 169 (290)
.+.|..|+-.|. +-+..++..|+ .+.|.||| ||| .+... +|+. ++=+.=|+
T Consensus 219 SElVqKYiGEGa--RlVRelF~lAr----------ekaPsIIF-iDEIDAIg~k---------R~d~~t~gDrEVQ---- 272 (406)
T COG1222 219 SELVQKYIGEGA--RLVRELFELAR----------EKAPSIIF-IDEIDAIGAK---------RFDSGTSGDREVQ---- 272 (406)
T ss_pred HHHHHHHhccch--HHHHHHHHHHh----------hcCCeEEE-Eechhhhhcc---------cccCCCCchHHHH----
Confidence 367889985554 55555555554 34468888 677 33221 1322 22222222
Q ss_pred cCcHHHHHHHHHHH----hCCCeEEEecCCCcc
Q 044563 170 LKHMFTLKLFMKLQ----VRGWPVILLSRKHEG 198 (290)
Q Consensus 170 paip~~l~l~~~l~----~~Gv~V~~iSgR~e~ 198 (290)
--+++|++.|- ...+|||.-|||.+.
T Consensus 273 ---RTmleLL~qlDGFD~~~nvKVI~ATNR~D~ 302 (406)
T COG1222 273 ---RTMLELLNQLDGFDPRGNVKVIMATNRPDI 302 (406)
T ss_pred ---HHHHHHHHhccCCCCCCCeEEEEecCCccc
Confidence 24778888774 456899999999864
No 284
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=30.07 E-value=47 Score=27.87 Aligned_cols=31 Identities=16% Similarity=0.099 Sum_probs=26.1
Q ss_pred HHhhcCcCcHHHHHHHHHHHhCCCeEEEecC
Q 044563 164 IEEAKHLKHMFTLKLFMKLQVRGWPVILLSR 194 (290)
Q Consensus 164 v~~~~apaip~~l~l~~~l~~~Gv~V~~iSg 194 (290)
..+.+.|+.|+.-+|++.+++.|++++...-
T Consensus 53 ~ekik~~~~~~l~~~~~~a~e~GVk~yvCe~ 83 (120)
T COG2044 53 AEKIKHPNFPPLEELIKQAIEAGVKIYVCEQ 83 (120)
T ss_pred hhhhcCCCCCCHHHHHHHHHHcCCEEEEEcc
Confidence 3455678889999999999999999988764
No 285
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=30.02 E-value=3e+02 Score=24.32 Aligned_cols=79 Identities=11% Similarity=0.176 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhCCCeEEEecCCC----cc------chHHHHHHHHhCCCCCCCcceeecCcccCcchHHhhHHHHHHH--
Q 044563 174 FTLKLFMKLQVRGWPVILLSRKH----EG------QRNATTELLISAGYRGWSSLIMRLDNEMQMDSREYLSRRRTIL-- 241 (290)
Q Consensus 174 ~~l~l~~~l~~~Gv~V~~iSgR~----e~------~r~~T~~NL~~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i-- 241 (290)
.++.++ .+++.|++|+.++... +. ..+.+.+.-++.|+| ..++..+.+. -.|-+..++.|
T Consensus 12 S~~al~-~a~~~G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgip---l~~i~~~~~~----e~~~~~l~~~l~~ 83 (194)
T cd01994 12 SCYALY-RALEEGHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIP---LIRIEISGEE----EDEVEDLKELLRK 83 (194)
T ss_pred HHHHHH-HHHHcCCEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCc---EEEEeCCCCc----hHHHHHHHHHHHH
Confidence 344444 4445799887665431 11 335555666777887 2232211111 11222333222
Q ss_pred -HhcCCeEEEEeCCCcccccC
Q 044563 242 -QKEGFHITGLISNQMDALIG 261 (290)
Q Consensus 242 -~~~GYrIv~~iGDq~sDl~G 261 (290)
.++|+..+ ..||+.+|...
T Consensus 84 ~~~~g~~~v-v~G~i~sd~~~ 103 (194)
T cd01994 84 LKEEGVDAV-VFGAILSEYQR 103 (194)
T ss_pred HHHcCCCEE-EECccccHHHH
Confidence 33466654 88999999864
No 286
>PF15202 Adipogenin: Adipogenin
Probab=29.80 E-value=89 Score=23.89 Aligned_cols=40 Identities=30% Similarity=0.425 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCceeeccCCCCCCcccceehhhhcCCCCCCC-Cchhh
Q 044563 33 VGVLLITLLVTLAVMLQSCQNRSSGVVELTKSSGDNNYCKLFALHAELNSLEADN-LPEIC 92 (290)
Q Consensus 33 ~~~~~~~ll~~~~~~l~~c~~~~~~~~~~~~~~~~~~~C~swrl~vE~nN~~~w~-vP~~C 92 (290)
++++|+.+.|-+-++|. ..++. ++..-|-.| ++|. -|++|
T Consensus 25 v~lllfl~ivwlrflls-qdsee----------~dsd~c~dw---------epwsk~pae~ 65 (81)
T PF15202_consen 25 VGLLLFLLIVWLRFLLS-QDSEE----------NDSDVCFDW---------EPWSKGPAEF 65 (81)
T ss_pred HHHHHHHHHHHHHHHHc-ccccc----------cCcceeecc---------cccccCchHh
Confidence 34455555555555552 22222 344578765 6886 88875
No 287
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=29.71 E-value=2.1e+02 Score=31.98 Aligned_cols=29 Identities=10% Similarity=0.028 Sum_probs=26.3
Q ss_pred cCcCcHHHHHHHHHHHhCCCeEEEecCCC
Q 044563 168 KHLKHMFTLKLFMKLQVRGWPVILLSRKH 196 (290)
Q Consensus 168 ~apaip~~l~l~~~l~~~Gv~V~~iSgR~ 196 (290)
++|+-+++.+..+.+++.|++|..|||=.
T Consensus 629 eD~lq~~v~etI~~L~~AGIkv~mlTGD~ 657 (1057)
T TIGR01652 629 EDKLQEGVPETIELLRQAGIKIWVLTGDK 657 (1057)
T ss_pred hhhhhhccHHHHHHHHHCCCeEEEEcCCc
Confidence 56888999999999999999999999953
No 288
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=29.58 E-value=78 Score=23.66 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=32.0
Q ss_pred cCcHHHHHHHHHHHhCCC-eEEEecCCC-----ccchHHHHHHHHhCCCC
Q 044563 170 LKHMFTLKLFMKLQVRGW-PVILLSRKH-----EGQRNATTELLISAGYR 213 (290)
Q Consensus 170 paip~~l~l~~~l~~~Gv-~V~~iSgR~-----e~~r~~T~~NL~~~Gy~ 213 (290)
.|+.-..++++.+...|. .+.+|||+- ...+....++|.+ |+.
T Consensus 10 eA~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~Lk~~V~~~L~~-~~~ 58 (83)
T PF01713_consen 10 EALRALEEFLDEARQRGIRELRIITGKGNHSKGGVLKRAVRRWLEE-GYQ 58 (83)
T ss_dssp HHHHHHHHHHHHHHHTTHSEEEEE--STCTCCTSHHHHHHHHHHHH-THC
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCcHHHHHHHHHHh-hhc
Confidence 455667788888888887 666999996 3468999999998 875
No 289
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=29.13 E-value=70 Score=30.66 Aligned_cols=79 Identities=15% Similarity=0.151 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhhhCCCCCCCcEEEEecccccccChhhhhhccCC--CCccchHHHHHhhcCcCcHHHHHHHHHHHhCC
Q 044563 109 LNLSIQIVESYFNTLTPSYNGLDVVLMDIDDIFASSSKYSNLLIDR--VNVRGYIECIEEAKHLKHMFTLKLFMKLQVRG 186 (290)
Q Consensus 109 ~~~v~~~A~~y~~~~~~~~~g~~AvVfDIDetLsn~~y~~~~~~G~--~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~G 186 (290)
-+.+.+.|..|.+.-.| -++|++|+|=+ . .++. +|++.| |...+++++|+++|
T Consensus 23 ~~ev~~~~~~~~~~~iP----~d~i~lD~~~~-------~--~~~~f~~d~~~F------------Pdp~~mi~~L~~~G 77 (339)
T cd06603 23 QEDVKEVDAGFDEHDIP----YDVIWLDIEHT-------D--GKRYFTWDKKKF------------PDPEKMQEKLASKG 77 (339)
T ss_pred HHHHHHHHHHHHHcCCC----ceEEEEChHHh-------C--CCCceEeCcccC------------CCHHHHHHHHHHCC
Confidence 34455556655544333 35899997631 0 0111 344333 44577999999999
Q ss_pred CeEEEecCCCcc--chHHHHHHHHhCCC
Q 044563 187 WPVILLSRKHEG--QRNATTELLISAGY 212 (290)
Q Consensus 187 v~V~~iSgR~e~--~r~~T~~NL~~~Gy 212 (290)
++|+++..-.-. ....+-+-+++.||
T Consensus 78 ~k~~~~~~P~v~~~~~~~~y~e~~~~g~ 105 (339)
T cd06603 78 RKLVTIVDPHIKRDDGYYVYKEAKDKGY 105 (339)
T ss_pred CEEEEEecCceecCCCCHHHHHHHHCCe
Confidence 999987763211 11234445666665
No 290
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=29.12 E-value=1.5e+02 Score=27.15 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=36.8
Q ss_pred cCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCC
Q 044563 170 LKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRG 214 (290)
Q Consensus 170 paip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~ 214 (290)
-++-..-++=+.+++.+++|.+||=..+ +.+.|.+-|.++|..+
T Consensus 130 v~V~~~d~le~~v~~~dv~iaiLtVPa~-~AQ~vad~Lv~aGVkG 173 (211)
T COG2344 130 VPVYDLDDLEKFVKKNDVEIAILTVPAE-HAQEVADRLVKAGVKG 173 (211)
T ss_pred eeeechHHHHHHHHhcCccEEEEEccHH-HHHHHHHHHHHcCCce
Confidence 5677777888889999999999998654 5678899999999863
No 291
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=29.10 E-value=1.1e+02 Score=23.93 Aligned_cols=38 Identities=16% Similarity=0.245 Sum_probs=29.0
Q ss_pred CcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCC
Q 044563 171 KHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYR 213 (290)
Q Consensus 171 aip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~ 213 (290)
++....++++.++++|++++|..-++ ...+-|...|+.
T Consensus 65 gi~~L~~~~~~~~~~g~~~~l~~~~~-----~v~~~l~~~~~~ 102 (117)
T PF01740_consen 65 GIQALVDIIKELRRRGVQLVLVGLNP-----DVRRILERSGLI 102 (117)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEESHHH-----HHHHHHHHTTGH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHcCCC
Confidence 34457789999999999999887654 444558888875
No 292
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.58 E-value=1.9e+02 Score=27.03 Aligned_cols=13 Identities=15% Similarity=0.071 Sum_probs=10.6
Q ss_pred CCcccceehhhhc
Q 044563 68 NNYCKLFALHAEL 80 (290)
Q Consensus 68 ~~~C~swrl~vE~ 80 (290)
+..|..||++.+.
T Consensus 71 epn~a~~r~gs~~ 83 (238)
T KOG0090|consen 71 EPNEATYRLGSEN 83 (238)
T ss_pred ccceeeEeecCcc
Confidence 6689999998765
No 293
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=28.37 E-value=95 Score=25.20 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=28.0
Q ss_pred HHHHHHHHhCCCeEEEecCCC--ccchHHHHHHHHhCC
Q 044563 176 LKLFMKLQVRGWPVILLSRKH--EGQRNATTELLISAG 211 (290)
Q Consensus 176 l~l~~~l~~~Gv~V~~iSgR~--e~~r~~T~~NL~~~G 211 (290)
..+.+.+.++|..++++++|+ +...+.+.+.|+..|
T Consensus 14 ~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~ 51 (167)
T PF00106_consen 14 RALARALARRGARVVILTSRSEDSEGAQELIQELKAPG 51 (167)
T ss_dssp HHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCceEEEEeeecccccccccccccccccc
Confidence 567788888888888888888 455667788888776
No 294
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=28.33 E-value=2.6e+02 Score=24.42 Aligned_cols=68 Identities=19% Similarity=0.147 Sum_probs=44.2
Q ss_pred HHHHHHHHhCCCeEEEecCC-CccchHHHHHHHHhCCCCCCCcceeecCcccCcchHHhhHHHHHHHHhcCCeE
Q 044563 176 LKLFMKLQVRGWPVILLSRK-HEGQRNATTELLISAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGFHI 248 (290)
Q Consensus 176 l~l~~~l~~~Gv~V~~iSgR-~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GYrI 248 (290)
-+|-..|+++|++=++|+|= .+.+-..|+..+...||. +++-.+.-...+ .+.....-+.+...|=.|
T Consensus 127 t~L~~~L~~~~i~~lii~G~~t~~CV~~T~~~a~~~g~~----v~v~~Da~~~~~-~~~~~~al~~~~~~G~~i 195 (196)
T cd01011 127 TGLAEYLRERGIDRVDVVGLATDYCVKATALDALKAGFE----VRVLEDACRAVD-PETIERAIEEMKEAGVVL 195 (196)
T ss_pred hhHHHHHHHCCCCEEEEEEecccHHHHHHHHHHHHCCCE----EEEeccccCCCC-HHHHHHHHHHHHHccCEE
Confidence 46778899999999999996 466788999999999984 444333221211 123344445566666544
No 295
>cd06524 GH25_YegX-like YegX is an uncharacterized bacterial protein with a glycosyl hydrolase family 25 (GH25) catalytic domain that is similar in sequence to the CH-type (Chalaropsis-type) lysozymes of the GH25 family of endolysins.
Probab=28.26 E-value=1.3e+02 Score=26.25 Aligned_cols=63 Identities=16% Similarity=0.070 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhhCCCCCCCcEEEEeccc-ccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhC-CCe
Q 044563 111 LSIQIVESYFNTLTPSYNGLDVVLMDIDD-IFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVR-GWP 188 (290)
Q Consensus 111 ~v~~~A~~y~~~~~~~~~g~~AvVfDIDe-tLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~-Gv~ 188 (290)
.+.++|..+++.+.....+...+++|+++ ...+. +. .....+..|++.++++ |.+
T Consensus 69 ~a~~qA~~f~~~~~~~~~~~~~~~lDvE~~~~~~~------------~~-----------~~~~~~~~f~~~v~~~~g~~ 125 (194)
T cd06524 69 DPKQQADNFLNTVKLLGPGDLPPVLDVEWDGRKSS------------AK-----------QIQEGVLEWLDAVEKATGVK 125 (194)
T ss_pred CHHHHHHHHHHHcCCCCCCCCCeEEEEecCCCCCC------------HH-----------HHHHHHHHHHHHHHHHHCCC
Confidence 35577887877665522222345799988 32111 00 1124577899998875 888
Q ss_pred EEEecCCC
Q 044563 189 VILLSRKH 196 (290)
Q Consensus 189 V~~iSgR~ 196 (290)
+.+-|++.
T Consensus 126 ~~iY~~~~ 133 (194)
T cd06524 126 PIIYTNPS 133 (194)
T ss_pred eEEEEcHH
Confidence 88888864
No 296
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=28.18 E-value=97 Score=27.04 Aligned_cols=36 Identities=14% Similarity=0.250 Sum_probs=23.3
Q ss_pred HHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCC
Q 044563 176 LKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAG 211 (290)
Q Consensus 176 l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~G 211 (290)
..+.+.+.++|.+|+.+..|.+...+.+.+.++..|
T Consensus 18 ~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~ 53 (250)
T PRK08063 18 KAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALG 53 (250)
T ss_pred HHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC
Confidence 456777788888887766776555455555555443
No 297
>PRK15482 transcriptional regulator MurR; Provisional
Probab=27.98 E-value=71 Score=29.51 Aligned_cols=28 Identities=11% Similarity=0.026 Sum_probs=24.6
Q ss_pred CcHHHHHHHHHHHhCCCeEEEecCCCcc
Q 044563 171 KHMFTLKLFMKLQVRGWPVILLSRKHEG 198 (290)
Q Consensus 171 aip~~l~l~~~l~~~Gv~V~~iSgR~e~ 198 (290)
-.+.+++..+.++++|.+|+.||+....
T Consensus 194 ~t~~~~~~~~~a~~~g~~iI~IT~~~~s 221 (285)
T PRK15482 194 SKKEIVLCAEAARKQGATVIAITSLADS 221 (285)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 3577999999999999999999998754
No 298
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=27.79 E-value=85 Score=34.64 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=20.3
Q ss_pred cCcHHHHHHHHHHHhCCCeEEEecCCCc
Q 044563 170 LKHMFTLKLFMKLQVRGWPVILLSRKHE 197 (290)
Q Consensus 170 paip~~l~l~~~l~~~Gv~V~~iSgR~e 197 (290)
||-+.+-+-+.+.++.|++|+.+||+.-
T Consensus 590 PPR~~vP~Av~~CrsAGIkvimVTgdhp 617 (1019)
T KOG0203|consen 590 PPRAAVPDAVGKCRSAGIKVIMVTGDHP 617 (1019)
T ss_pred CCcccCchhhhhhhhhCceEEEEecCcc
Confidence 3333444455688999999999999963
No 299
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=27.57 E-value=3.3e+02 Score=28.20 Aligned_cols=66 Identities=8% Similarity=0.159 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhhCCCCCC-CcEEEEeccc--ccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCe
Q 044563 112 SIQIVESYFNTLTPSYNG-LDVVLMDIDD--IFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWP 188 (290)
Q Consensus 112 v~~~A~~y~~~~~~~~~g-~~AvVfDIDe--tLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~ 188 (290)
....-..-++++...+|- ||-.||=+|| +|=|. .|+.+-+ -+-..++-.+++||-
T Consensus 235 LLwLLsELfe~LPEvGD~dkPklVfFfDEAHLLF~d-----------a~kall~-----------~ieqvvrLIRSKGVG 292 (502)
T PF05872_consen 235 LLWLLSELFEQLPEVGDLDKPKLVFFFDEAHLLFND-----------APKALLD-----------KIEQVVRLIRSKGVG 292 (502)
T ss_pred HHHHHHHHHHhCccCCCCCCceEEEEEechhhhhcC-----------CCHHHHH-----------HHHHHHHHhhccCce
Confidence 333333344455544543 6678888888 22221 1222322 233466778999999
Q ss_pred EEEecCCCccc
Q 044563 189 VILLSRKHEGQ 199 (290)
Q Consensus 189 V~~iSgR~e~~ 199 (290)
|||||-++.+.
T Consensus 293 v~fvTQ~P~Di 303 (502)
T PF05872_consen 293 VYFVTQNPTDI 303 (502)
T ss_pred EEEEeCCCCCC
Confidence 99999998653
No 300
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=27.51 E-value=63 Score=25.72 Aligned_cols=36 Identities=28% Similarity=0.183 Sum_probs=26.3
Q ss_pred cHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCC
Q 044563 172 HMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYR 213 (290)
Q Consensus 172 ip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~ 213 (290)
+-+.+.+.++|+++|++|.+.|.+.- .+-+.+.|++
T Consensus 12 v~P~lala~~L~~rGh~V~~~~~~~~------~~~v~~~Gl~ 47 (139)
T PF03033_consen 12 VYPFLALARALRRRGHEVRLATPPDF------RERVEAAGLE 47 (139)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEETGGG------HHHHHHTT-E
T ss_pred HHHHHHHHHHHhccCCeEEEeecccc------eecccccCce
Confidence 45788999999999999999998642 2334777875
No 301
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=27.32 E-value=2.5e+02 Score=23.97 Aligned_cols=38 Identities=26% Similarity=0.198 Sum_probs=27.4
Q ss_pred HHHHHHHHHhCCCeEEEecCCC-c--cchHHHHHHHHhCCC
Q 044563 175 TLKLFMKLQVRGWPVILLSRKH-E--GQRNATTELLISAGY 212 (290)
Q Consensus 175 ~l~l~~~l~~~Gv~V~~iSgR~-e--~~r~~T~~NL~~~Gy 212 (290)
...+.++|..+|..=+++++|+ . ......++.|++.|-
T Consensus 13 g~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~ 53 (181)
T PF08659_consen 13 GQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGA 53 (181)
T ss_dssp HHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCC
Confidence 4578889999998777777777 2 345578899999876
No 302
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=27.23 E-value=66 Score=32.62 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCC---CCCCCcc
Q 044563 173 MFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAG---YRGWSSL 218 (290)
Q Consensus 173 p~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~G---y~~~d~L 218 (290)
|....+++.+++.|-++|+|||=+=..-+.....|.... .++|..+
T Consensus 186 ~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dl 234 (448)
T PF05761_consen 186 PKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDL 234 (448)
T ss_dssp CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGC
T ss_pred chHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhh
Confidence 456788899999999999999977666778888875441 2356544
No 303
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=27.22 E-value=1.3e+02 Score=23.23 Aligned_cols=10 Identities=30% Similarity=0.428 Sum_probs=7.0
Q ss_pred CcEEEEeccc
Q 044563 130 LDVVLMDIDD 139 (290)
Q Consensus 130 ~~AvVfDIDe 139 (290)
++.|+|=+|+
T Consensus 5 ~~~v~ltfDd 14 (123)
T PF01522_consen 5 KKSVALTFDD 14 (123)
T ss_dssp SSEEEEEEES
T ss_pred CCEEEEEEec
Confidence 4577777777
No 304
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=26.98 E-value=61 Score=30.96 Aligned_cols=30 Identities=10% Similarity=0.232 Sum_probs=26.6
Q ss_pred eEEEecCCCccchHHHHHHHHhCCCCCCCc
Q 044563 188 PVILLSRKHEGQRNATTELLISAGYRGWSS 217 (290)
Q Consensus 188 ~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~ 217 (290)
.+++|||++..-+.+.++-|...||-..|.
T Consensus 2 ~lvIVTGlSGAGKsvAl~~lEDlGyycvDN 31 (286)
T COG1660 2 RLVIVTGLSGAGKSVALRVLEDLGYYCVDN 31 (286)
T ss_pred cEEEEecCCCCcHHHHHHHHHhcCeeeecC
Confidence 689999999999999999999999865553
No 305
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=26.96 E-value=2.2e+02 Score=21.03 Aligned_cols=14 Identities=7% Similarity=0.116 Sum_probs=11.7
Q ss_pred HhcCCeEEEEeCCC
Q 044563 242 QKEGFHITGLISNQ 255 (290)
Q Consensus 242 ~~~GYrIv~~iGDq 255 (290)
...|+.++..+|++
T Consensus 51 ~~~g~~~~iiiG~~ 64 (94)
T cd00861 51 DLIGIPYRIVVGKK 64 (94)
T ss_pred HhcCCCEEEEECCc
Confidence 46899999999976
No 306
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=26.81 E-value=2.9e+02 Score=26.33 Aligned_cols=48 Identities=10% Similarity=0.121 Sum_probs=25.1
Q ss_pred chHHHHHHHHhCCCCCCCcceeecCcccCcchHHhhHH-HHHHHHhcCCeEEEEeCCCcc
Q 044563 199 QRNATTELLISAGYRGWSSLIMRLDNEMQMDSREYLSR-RRTILQKEGFHITGLISNQMD 257 (290)
Q Consensus 199 ~r~~T~~NL~~~Gy~~~d~LiLR~~~~~~~~~~~yKs~-~R~~i~~~GYrIv~~iGDq~s 257 (290)
--..+.+.|++.|.. ++ |..|+-+ -|-. .=+++.++||.|+ .+||.-.
T Consensus 79 v~~~~~~~~~~~g~~----vi-----DaTCP~V-~k~~~~v~~~~~~Gy~iv-iiG~~~H 127 (281)
T PRK12360 79 VSKKVYKDLKDKGLE----II-----DATCPFV-KKIQNIVEEYYNKGYSII-IVGDKNH 127 (281)
T ss_pred CCHHHHHHHHHCCCe----EE-----eCCCccc-hHHHHHHHHHHhCCCEEE-EEcCCCC
Confidence 344566666666653 11 3344433 1211 1124557899998 6788633
No 307
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=26.61 E-value=36 Score=30.35 Aligned_cols=15 Identities=13% Similarity=0.461 Sum_probs=12.9
Q ss_pred CcEEEEecccccccC
Q 044563 130 LDVVLMDIDDIFASS 144 (290)
Q Consensus 130 ~~AvVfDIDetLsn~ 144 (290)
+..++||.||||-+.
T Consensus 5 ~~la~FDfDgTLt~~ 19 (210)
T TIGR01545 5 KRIIFFDLDGTLHQQ 19 (210)
T ss_pred CcEEEEcCCCCCccC
Confidence 568999999998875
No 308
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=26.57 E-value=2.4e+02 Score=26.61 Aligned_cols=68 Identities=21% Similarity=0.238 Sum_probs=39.9
Q ss_pred HHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCcccCcchHHhhHHHHHHHHhcCCeEEE
Q 044563 176 LKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGFHITG 250 (290)
Q Consensus 176 l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GYrIv~ 250 (290)
.++.+.+.++|+.++++..|.+...+...+=-.+.|.. ..+.+-|-...+++ +....++...++.|=.
T Consensus 20 ~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~----v~vi~~DLs~~~~~---~~l~~~l~~~~~~Idv 87 (265)
T COG0300 20 AELAKQLARRGYNLILVARREDKLEALAKELEDKTGVE----VEVIPADLSDPEAL---ERLEDELKERGGPIDV 87 (265)
T ss_pred HHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCce----EEEEECcCCChhHH---HHHHHHHHhcCCcccE
Confidence 46888999999999998888776665555544455542 33444443222222 1234456566555543
No 309
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=26.46 E-value=1.9e+02 Score=25.93 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=38.6
Q ss_pred HHHHHHHhCCCeEEEecCCCcc-----------chHHHHHHHHhC-CCCCCCcceeecCcccCcchHHhhHHHHHHHHhc
Q 044563 177 KLFMKLQVRGWPVILLSRKHEG-----------QRNATTELLISA-GYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKE 244 (290)
Q Consensus 177 ~l~~~l~~~Gv~V~~iSgR~e~-----------~r~~T~~NL~~~-Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~ 244 (290)
++++.+.+.|+.|--=|-.... +-..|.+.|.+. |-+ .-.++|.+... |-...++.+.+.
T Consensus 80 ~~ir~i~~~GheIgnHt~~H~~~~~ls~~~~~~ei~~~~~~i~~~~G~~--~~~~fR~P~G~------~~~~~~~~l~~~ 151 (224)
T TIGR02884 80 DLIKRMVDEGHIVGNHSVHHPSLTAVNDEKFKEELTGVEEEFKKVTGQK--EMKYFRPPRGV------FSERTLAYTKEL 151 (224)
T ss_pred HHHHHHHHcCCEeeecCccCcCcccCCHHHHHHHHHHHHHHHHHHhCCC--CCCEEeCCCCC------cCHHHHHHHHHc
Confidence 5677888888876554443321 123455566555 321 13467766532 334566777888
Q ss_pred CCeEEEE
Q 044563 245 GFHITGL 251 (290)
Q Consensus 245 GYrIv~~ 251 (290)
||+++..
T Consensus 152 Gy~~v~w 158 (224)
T TIGR02884 152 GYYTVFW 158 (224)
T ss_pred CCcEEec
Confidence 9998753
No 310
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=26.45 E-value=1.2e+02 Score=24.00 Aligned_cols=42 Identities=17% Similarity=0.120 Sum_probs=33.0
Q ss_pred cHHHHHHHHHHHhCCCeEEEecCC---CccchHHHHHHHHhCCCC
Q 044563 172 HMFTLKLFMKLQVRGWPVILLSRK---HEGQRNATTELLISAGYR 213 (290)
Q Consensus 172 ip~~l~l~~~l~~~Gv~V~~iSgR---~e~~r~~T~~NL~~~Gy~ 213 (290)
+|..-+++++..+.|+.|+.|+.- .+...+...+.+++.|++
T Consensus 42 ~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~ 86 (126)
T cd03012 42 LPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGIT 86 (126)
T ss_pred HHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCC
Confidence 677889999999999999999752 134466777888888885
No 311
>PF11359 gpUL132: Glycoprotein UL132; InterPro: IPR021023 Glycoprotein UL132 is a low-abundance structural component of Human herpesvirus 5 []. The function of this protein is not fully understood.
Probab=26.43 E-value=1.1e+02 Score=28.28 Aligned_cols=14 Identities=29% Similarity=0.484 Sum_probs=11.4
Q ss_pred cEEEEecccccccC
Q 044563 131 DVVLMDIDDIFASS 144 (290)
Q Consensus 131 ~AvVfDIDetLsn~ 144 (290)
.++-||=||.|+.+
T Consensus 155 nviyf~k~gnldts 168 (235)
T PF11359_consen 155 NVIYFDKDGNLDTS 168 (235)
T ss_pred heEEEccCCCccce
Confidence 48999999988654
No 312
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=26.25 E-value=46 Score=29.94 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=21.6
Q ss_pred cHHHHHHHHHHHhCCCeEEEecCCCccc
Q 044563 172 HMFTLKLFMKLQVRGWPVILLSRKHEGQ 199 (290)
Q Consensus 172 ip~~l~l~~~l~~~Gv~V~~iSgR~e~~ 199 (290)
.++..++++.+.++|.+. ++||.+...
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~ 166 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGI 166 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEec
Confidence 477888888888899986 889987543
No 313
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=26.13 E-value=78 Score=28.96 Aligned_cols=27 Identities=7% Similarity=-0.201 Sum_probs=23.8
Q ss_pred cHHHHHHHHHHHhCCCeEEEecCCCcc
Q 044563 172 HMFTLKLFMKLQVRGWPVILLSRKHEG 198 (290)
Q Consensus 172 ip~~l~l~~~l~~~Gv~V~~iSgR~e~ 198 (290)
.+.+++..+.++++|.+|+.||+.+..
T Consensus 188 ~~~~~~~~~~ak~~ga~iI~IT~~~~s 214 (278)
T PRK11557 188 RRELNLAADEALRVGAKVLAITGFTPN 214 (278)
T ss_pred CHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 567899999999999999999998754
No 314
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=26.06 E-value=70 Score=31.95 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=24.2
Q ss_pred CcHHHHHHHHHHHhCCCeEEEecCCCc
Q 044563 171 KHMFTLKLFMKLQVRGWPVILLSRKHE 197 (290)
Q Consensus 171 aip~~l~l~~~l~~~Gv~V~~iSgR~e 197 (290)
-.|..++|+++|+++|-+.|+|||-+-
T Consensus 241 r~~ql~~fl~kL~~~GKklFLiTNSPy 267 (510)
T KOG2470|consen 241 RNPQLLAFLRKLKDHGKKLFLITNSPY 267 (510)
T ss_pred ccHHHHHHHHHHHHhcCcEEEEeCCch
Confidence 356899999999999999999999874
No 315
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=26.01 E-value=85 Score=27.67 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=23.3
Q ss_pred cHHHHHHHHHHHhCCCeEEEecCCCcc
Q 044563 172 HMFTLKLFMKLQVRGWPVILLSRKHEG 198 (290)
Q Consensus 172 ip~~l~l~~~l~~~Gv~V~~iSgR~e~ 198 (290)
.+.+++..+.++++|.+|+.||+-.++
T Consensus 124 t~~~i~~~~~ak~~g~~iI~iT~~~~s 150 (192)
T PRK00414 124 SGNIIKAIEAARAKGMKVITLTGKDGG 150 (192)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 456889999999999999999997653
No 316
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=25.94 E-value=3.1e+02 Score=23.80 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=27.0
Q ss_pred HHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCC
Q 044563 175 TLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYR 213 (290)
Q Consensus 175 ~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~ 213 (290)
-.++.+.+.+.|+.-+++++.+.. ....+.|++.|+|
T Consensus 44 ~~~~~~~l~~~~vdgiIi~~~~~~--~~~~~~l~~~~ip 80 (265)
T cd06299 44 ENRYLDNLLSQRVDGIIVVPHEQS--AEQLEDLLKRGIP 80 (265)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCC--hHHHHHHHhCCCC
Confidence 446778888999987777765433 2347889999988
No 317
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=25.67 E-value=1.6e+02 Score=25.71 Aligned_cols=62 Identities=10% Similarity=0.036 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhhhCCCCCC-CcEEEEeccc-ccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCC
Q 044563 109 LNLSIQIVESYFNTLTPSYNG-LDVVLMDIDD-IFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRG 186 (290)
Q Consensus 109 ~~~v~~~A~~y~~~~~~~~~g-~~AvVfDIDe-tLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~G 186 (290)
...+.++|..+++.++..+-. ...+++|+.+ .. .. .....+..|++.++++|
T Consensus 69 ~~~a~~eA~~f~~~~~~~~~~~~~~~~lD~E~~~~---------------~~-----------~~~~~~~~F~~~v~~~g 122 (192)
T cd06522 69 AADAQAEARYFANTAKSLGLSKNTVMVADMEDSSS---------------SG-----------NATANVNAFWQTMKAAG 122 (192)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCCCceEEEeecCCC---------------cc-----------hHHHHHHHHHHHHHHcC
Confidence 456777888888776533222 3367899987 21 00 11223678999999999
Q ss_pred C-eEEEecCCC
Q 044563 187 W-PVILLSRKH 196 (290)
Q Consensus 187 v-~V~~iSgR~ 196 (290)
. ++++=|++.
T Consensus 123 ~~~~~iY~~~~ 133 (192)
T cd06522 123 YKNTDVYTSAS 133 (192)
T ss_pred CCCcEEEccHH
Confidence 8 677777754
No 318
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=25.54 E-value=1.7e+02 Score=31.88 Aligned_cols=62 Identities=19% Similarity=0.266 Sum_probs=41.9
Q ss_pred cEEEEecccccccChhhhhhccCC--CCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHH
Q 044563 131 DVVLMDIDDIFASSSKYSNLLIDR--VNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLI 208 (290)
Q Consensus 131 ~AvVfDIDetLsn~~y~~~~~~G~--~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~ 208 (290)
++++||+| ++.+. ++. +|+.+|. ..-.+.++++++|++++.+-+=.-.+...--+-++
T Consensus 297 d~~~lD~~-------~~~~~-~~~F~wd~~~FP------------~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~ 356 (772)
T COG1501 297 DVFVLDID-------FWMDN-WGDFTWDPDRFP------------DPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAI 356 (772)
T ss_pred eEEEEeeh-------hhhcc-ccceEECcccCC------------CHHHHHHHHHhcCceEEEEeccccccCCchHHHHH
Confidence 58999998 22221 121 4555552 23389999999999999998865555555666777
Q ss_pred hCCC
Q 044563 209 SAGY 212 (290)
Q Consensus 209 ~~Gy 212 (290)
+.||
T Consensus 357 ~~Gy 360 (772)
T COG1501 357 EKGY 360 (772)
T ss_pred HCCe
Confidence 8886
No 319
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=25.22 E-value=87 Score=24.93 Aligned_cols=26 Identities=27% Similarity=0.256 Sum_probs=20.2
Q ss_pred HHHHHHHHHhCCCeEEEecCCCccch
Q 044563 175 TLKLFMKLQVRGWPVILLSRKHEGQR 200 (290)
Q Consensus 175 ~l~l~~~l~~~Gv~V~~iSgR~e~~r 200 (290)
+.++.+.|.++|++|.+++.+.+...
T Consensus 18 ~~~l~~~l~~~G~~v~v~~~~~~~~~ 43 (177)
T PF13439_consen 18 VLNLARALAKRGHEVTVVSPGVKDPI 43 (177)
T ss_dssp HHHHHHHHHHTT-EEEEEESS-TTS-
T ss_pred HHHHHHHHHHCCCEEEEEEcCCCccc
Confidence 78899999999999999998865543
No 320
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=25.20 E-value=1.4e+02 Score=28.53 Aligned_cols=40 Identities=23% Similarity=0.151 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhCCCeEEEecCCCccchHHH-HHHHHhCCC
Q 044563 173 MFTLKLFMKLQVRGWPVILLSRKHEGQRNAT-TELLISAGY 212 (290)
Q Consensus 173 p~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T-~~NL~~~Gy 212 (290)
|...+++++|+++|++|+++..-.-...... -+-+.+.||
T Consensus 71 Pdp~~mi~~Lh~~G~~~~~~i~P~v~~~~~~~y~~~~~~g~ 111 (317)
T cd06594 71 PGLDELIEELKARGIRVLTYINPYLADDGPLYYEEAKDAGY 111 (317)
T ss_pred CCHHHHHHHHHHCCCEEEEEecCceecCCchhHHHHHHCCe
Confidence 4456999999999999998876532211122 356677775
No 321
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=25.18 E-value=2.3e+02 Score=23.50 Aligned_cols=69 Identities=20% Similarity=0.181 Sum_probs=43.6
Q ss_pred HHHHHHHHhCCCeEEEecCC-CccchHHHHHHHHhCCCCCCCcceeecCcccCcchHHhhHHHHHHHHhcCCeEE
Q 044563 176 LKLFMKLQVRGWPVILLSRK-HEGQRNATTELLISAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGFHIT 249 (290)
Q Consensus 176 l~l~~~l~~~Gv~V~~iSgR-~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GYrIv 249 (290)
-+|-..|+++|++-++|+|= .+.+=..|...+.+.||. -.++.+.-. ..+ .......-+.++..|-.|+
T Consensus 101 t~L~~~L~~~gi~~vil~G~~t~~CV~~Ta~~a~~~g~~---v~v~~Da~~-~~~-~~~h~~~l~~l~~~~~~v~ 170 (174)
T PF00857_consen 101 TDLDEILRKRGIDTVILCGVATDVCVLATARDAFDRGYR---VIVVEDACA-SYS-PEAHEAALEELRKRGAEVI 170 (174)
T ss_dssp SSHHHHHHHTTESEEEEEEESTTTHHHHHHHHHHHTT-E---EEEEEEEEE-BSS-HHHHHHHHHHHHHHTSEEE
T ss_pred ccccccccccccceEEEcccccCcEEehhHHHHHHCCCE---EEEEChhhc-CCC-HHHHHHHHHHHHhCCCEEE
Confidence 36778899999999999995 566789999999999995 233332211 111 2234444455655555543
No 322
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=24.54 E-value=1.2e+02 Score=23.33 Aligned_cols=75 Identities=20% Similarity=0.139 Sum_probs=44.9
Q ss_pred CcEEEEeccc-ccccChhhhhhc-cCCCCccch-HHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHH
Q 044563 130 LDVVLMDIDD-IFASSSKYSNLL-IDRVNVRGY-IECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTEL 206 (290)
Q Consensus 130 ~~AvVfDIDe-tLsn~~y~~~~~-~G~~~~~~w-~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~N 206 (290)
|+.-+-|+|+ .++...+ .... .=.|-++.| ..|... ++...+++++++++|+.|+.||.-+.. ...+.
T Consensus 6 P~f~l~~~~g~~~~l~~l-~gk~~vl~f~~~~~c~~c~~~-----l~~l~~~~~~~~~~~~~vi~is~d~~~---~~~~~ 76 (124)
T PF00578_consen 6 PDFTLTDSDGKTVSLSDL-KGKPVVLFFWPTAWCPFCQAE-----LPELNELYKKYKDKGVQVIGISTDDPE---EIKQF 76 (124)
T ss_dssp GCEEEETTTSEEEEGGGG-TTSEEEEEEESTTTSHHHHHH-----HHHHHHHHHHHHTTTEEEEEEESSSHH---HHHHH
T ss_pred CCcEeECCCCCEEEHHHH-CCCcEEEEEeCccCccccccc-----hhHHHHHhhhhccceEEeeeccccccc---chhhh
Confidence 4566668887 5554433 2110 001222223 233322 566788999999999999999995433 66777
Q ss_pred HHhCCCC
Q 044563 207 LISAGYR 213 (290)
Q Consensus 207 L~~~Gy~ 213 (290)
+++.+++
T Consensus 77 ~~~~~~~ 83 (124)
T PF00578_consen 77 LEEYGLP 83 (124)
T ss_dssp HHHHTCS
T ss_pred hhhhccc
Confidence 7777754
No 323
>PF15347 PAG: Phosphoprotein associated with glycosphingolipid-enriched
Probab=24.48 E-value=1.1e+02 Score=30.59 Aligned_cols=38 Identities=26% Similarity=0.401 Sum_probs=22.2
Q ss_pred cccCC-CCceEeehHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 044563 16 SLSSR-GGSVIFIGGLITVGVLLITLLVTLAVMLQSCQNRS 55 (290)
Q Consensus 16 ~~~~~-~~~~i~~~~~~~~~~~~~~ll~~~~~~l~~c~~~~ 55 (290)
|+++. .-.+|+.++|+++..||+.. .|.++-.+|+...
T Consensus 6 ~~Ls~gq~qivlwgsLaav~~f~lis--~LifLCsSC~reK 44 (428)
T PF15347_consen 6 SLLSSGQVQIVLWGSLAAVTTFLLIS--FLIFLCSSCDREK 44 (428)
T ss_pred ccccCCceeEEeehHHHHHHHHHHHH--HHHHHhhcccccc
Confidence 34443 34599999999887655433 2222334776543
No 324
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.36 E-value=1.9e+02 Score=20.34 Aligned_cols=55 Identities=11% Similarity=0.102 Sum_probs=33.5
Q ss_pred HHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCcccCcchHHhhHHHHHHHHhcCCeEEE
Q 044563 176 LKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGFHITG 250 (290)
Q Consensus 176 l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GYrIv~ 250 (290)
.++.+.+.+.|+.|..+.--... .. +...+++|-+.+. .....+.|++.||+|+.
T Consensus 16 ~~i~~~l~~~~inI~~i~~~~~~----------~~---~~~~v~i~v~~~~-------~~~~~~~L~~~G~~v~~ 70 (72)
T cd04883 16 ADIAAIFKDRGVNIVSVLVYPSK----------EE---DNKILVFRVQTMN-------PRPIIEDLRRAGYEVLW 70 (72)
T ss_pred HHHHHHHHHcCCCEEEEEEeccC----------CC---CeEEEEEEEecCC-------HHHHHHHHHHCCCeeeC
Confidence 36778888999988866421110 11 2235677754321 12566788999999863
No 325
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=24.33 E-value=90 Score=28.18 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=22.5
Q ss_pred cHHHHHHHHHHHhCCCeEEEecCCC
Q 044563 172 HMFTLKLFMKLQVRGWPVILLSRKH 196 (290)
Q Consensus 172 ip~~l~l~~~l~~~Gv~V~~iSgR~ 196 (290)
.+.+++..+.++++|.+|+-||+..
T Consensus 60 t~~~~~~~~~a~~~g~~ii~iT~~~ 84 (268)
T TIGR00393 60 SLELLNLIPHLKRLSHKIIAFTGSP 84 (268)
T ss_pred CHHHHHHHHHHHHcCCcEEEEECCC
Confidence 4679999999999999999999974
No 326
>PRK02947 hypothetical protein; Provisional
Probab=24.24 E-value=90 Score=28.64 Aligned_cols=25 Identities=16% Similarity=0.208 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhCCCeEEEecCCCc
Q 044563 173 MFTLKLFMKLQVRGWPVILLSRKHE 197 (290)
Q Consensus 173 p~~l~l~~~l~~~Gv~V~~iSgR~e 197 (290)
+.++++.+.++++|.+|+.||+...
T Consensus 120 ~~~i~~~~~a~~~g~~vI~iT~~~~ 144 (246)
T PRK02947 120 PVPIEMALEAKERGAKVIAVTSLAY 144 (246)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCcc
Confidence 4689999999999999999999874
No 327
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=24.12 E-value=4.3e+02 Score=25.05 Aligned_cols=40 Identities=15% Similarity=-0.018 Sum_probs=28.4
Q ss_pred cHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCC
Q 044563 172 HMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYR 213 (290)
Q Consensus 172 ip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~ 213 (290)
.|...+++++++++|..|.+.||=.-- +..++.|+.+|+.
T Consensus 86 ~pdl~eiv~~~~~~g~~v~l~TNG~ll--~~~~~~l~~~~~~ 125 (318)
T TIGR03470 86 HPEIDEIVRGLVARKKFVYLCTNALLL--EKKLDKFEPSPYL 125 (318)
T ss_pred cccHHHHHHHHHHcCCeEEEecCceeh--HHHHHHHHhCCCc
Confidence 344667888889999999999995422 2346678888764
No 328
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=24.09 E-value=3.8e+02 Score=23.21 Aligned_cols=80 Identities=18% Similarity=0.213 Sum_probs=42.4
Q ss_pred CCcEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecC-CCccchHHHHHHH
Q 044563 129 GLDVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSR-KHEGQRNATTELL 207 (290)
Q Consensus 129 g~~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSg-R~e~~r~~T~~NL 207 (290)
+.+.|++|-|+.-...|.|..... . ++.....- ....+-.-+-.+++++.+.|..|++=|. ++......+++-+
T Consensus 41 ~~~~v~i~~D~~r~~~p~~~~~~~-~-~~~~~~~~---~~~~a~~~~~~~~~~a~~~~~nii~E~tl~~~~~~~~~~~~~ 115 (199)
T PF06414_consen 41 GGGIVVIDADEFRQFHPDYDELLK-A-DPDEASEL---TQKEASRLAEKLIEYAIENRYNIIFEGTLSNPSKLRKLIREA 115 (199)
T ss_dssp TT-SEEE-GGGGGGGSTTHHHHHH-H-HCCCTHHH---HHHHHHHHHHHHHHHHHHCT--EEEE--TTSSHHHHHHHHHH
T ss_pred CCCeEEEehHHHHHhccchhhhhh-h-hhhhhHHH---HHHHHHHHHHHHHHHHHHcCCCEEEecCCCChhHHHHHHHHH
Confidence 456999999995555565443110 0 01111111 1112334456788899999999998754 3333333489999
Q ss_pred HhCCCC
Q 044563 208 ISAGYR 213 (290)
Q Consensus 208 ~~~Gy~ 213 (290)
+++||.
T Consensus 116 k~~GY~ 121 (199)
T PF06414_consen 116 KAAGYK 121 (199)
T ss_dssp HCTT-E
T ss_pred HcCCce
Confidence 999995
No 329
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=23.93 E-value=72 Score=30.50 Aligned_cols=31 Identities=10% Similarity=0.202 Sum_probs=27.1
Q ss_pred CeEEEecCCCccchHHHHHHHHhCCCCCCCc
Q 044563 187 WPVILLSRKHEGQRNATTELLISAGYRGWSS 217 (290)
Q Consensus 187 v~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~ 217 (290)
.+|++|||.+..-+....+-|...||-..|.
T Consensus 1 m~~vIiTGlSGaGKs~Al~~lED~Gy~cvDN 31 (284)
T PF03668_consen 1 MELVIITGLSGAGKSTALRALEDLGYYCVDN 31 (284)
T ss_pred CeEEEEeCCCcCCHHHHHHHHHhcCeeEEcC
Confidence 3699999999999999999999999964443
No 330
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=23.90 E-value=91 Score=29.07 Aligned_cols=28 Identities=14% Similarity=0.004 Sum_probs=24.6
Q ss_pred cCcHHHHHHHHHHHhCCCeEEEecCCCc
Q 044563 170 LKHMFTLKLFMKLQVRGWPVILLSRKHE 197 (290)
Q Consensus 170 paip~~l~l~~~l~~~Gv~V~~iSgR~e 197 (290)
+--+.+++..+.++++|.+|+.||+...
T Consensus 188 G~t~e~i~~a~~ak~~ga~vIaiT~~~~ 215 (281)
T COG1737 188 GYTREIVEAAELAKERGAKVIAITDSAD 215 (281)
T ss_pred CCcHHHHHHHHHHHHCCCcEEEEcCCCC
Confidence 4457899999999999999999999854
No 331
>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=23.82 E-value=2.8e+02 Score=27.70 Aligned_cols=97 Identities=18% Similarity=0.124 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCCCcEEEEecccccccChhhhhhccCC--------CCccchHHHHHhhc--------Cc
Q 044563 107 RDLNLSIQIVESYFNTLTPSYNGLDVVLMDIDDIFASSSKYSNLLIDR--------VNVRGYIECIEEAK--------HL 170 (290)
Q Consensus 107 ~D~~~v~~~A~~y~~~~~~~~~g~~AvVfDIDetLsn~~y~~~~~~G~--------~~~~~w~~Wv~~~~--------ap 170 (290)
..+.++....+.|.+ ..+....-+=+.| ||......|. -+++..++|...++ ||
T Consensus 101 e~i~~al~~~~e~~~-----~~ga~ilGiHLEG-----P~ls~~kkGAh~~~~ir~~~~~~~~~~~~~a~g~i~~vTlAP 170 (380)
T COG1820 101 EKIKAALRAIREAIA-----KGGAQILGIHLEG-----PFLSPEKKGAHNPEYIRPPDPEELEQLIAAADGLIKLVTLAP 170 (380)
T ss_pred HHHHHHHHHHHHHHh-----ccCCceEEEEeec-----CccCHhhccCCCHHHhCCCCHHHHHHHHhhccCceEEEEECC
Confidence 455666666666665 2334455566666 3322212232 24566788887655 78
Q ss_pred CcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhC---CCCCCCcce
Q 044563 171 KHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISA---GYRGWSSLI 219 (290)
Q Consensus 171 aip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~---Gy~~~d~Li 219 (290)
-++++.++.+.+.++|+.|-+ .+-++|-++.+++ |...+.||+
T Consensus 171 E~~~~~e~i~~l~~~giivs~------GHS~Atye~~~~a~~~Ga~~~THlf 216 (380)
T COG1820 171 ELDGTKELIRLLANAGIVVSI------GHSNATYEQARAAFEAGATFVTHLF 216 (380)
T ss_pred CCCCCHHHHHHHHhCCeEEEe------cCccccHHHHHHHHHhCccEEEeec
Confidence 899999999999999986643 3345555555544 877666665
No 332
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=23.68 E-value=94 Score=28.37 Aligned_cols=24 Identities=17% Similarity=0.106 Sum_probs=22.0
Q ss_pred cHHHHHHHHHHHhCCCeEEEecCC
Q 044563 172 HMFTLKLFMKLQVRGWPVILLSRK 195 (290)
Q Consensus 172 ip~~l~l~~~l~~~Gv~V~~iSgR 195 (290)
.+.+++..+.++++|.+|+.||+.
T Consensus 188 t~~~~~~~~~ak~~g~~vI~IT~~ 211 (284)
T PRK11302 188 TKSLVELAQLARENGATVIAITSA 211 (284)
T ss_pred CHHHHHHHHHHHHcCCeEEEECCC
Confidence 578999999999999999999983
No 333
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=23.65 E-value=70 Score=30.72 Aligned_cols=38 Identities=8% Similarity=0.187 Sum_probs=27.9
Q ss_pred cHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCC
Q 044563 172 HMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYR 213 (290)
Q Consensus 172 ip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~ 213 (290)
+-+++.+.++|+++|++|.|++....-.+ +-+.++||+
T Consensus 15 i~Pala~a~~l~~~g~~v~~vg~~~~~e~----~l~~~~g~~ 52 (352)
T PRK12446 15 VTPNLAIIPYLKEDNWDISYIGSHQGIEK----TIIEKENIP 52 (352)
T ss_pred HHHHHHHHHHHHhCCCEEEEEECCCcccc----ccCcccCCc
Confidence 45689999999999999999986554322 235566875
No 334
>KOG2365 consensus Uncharacterized membrane protein [Function unknown]
Probab=23.57 E-value=94 Score=33.02 Aligned_cols=28 Identities=11% Similarity=0.026 Sum_probs=20.3
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHhh
Q 044563 95 LAIRYIKEGQFARDLNLSIQIVESYFNT 122 (290)
Q Consensus 95 ~v~~Y~~sgqY~~D~~~v~~~A~~y~~~ 122 (290)
.+..|-+.-+|++|++++.+.|..|=.+
T Consensus 441 ~~d~~~~~~e~~~~~~~~~~~ayqygrt 468 (808)
T KOG2365|consen 441 MVDMYTTKFEYETVSEQIDSLAYQYGRT 468 (808)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHhhhH
Confidence 3444444555999999999999888553
No 335
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=23.16 E-value=3.3e+02 Score=24.61 Aligned_cols=34 Identities=26% Similarity=0.140 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCC
Q 044563 174 FTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGY 212 (290)
Q Consensus 174 ~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy 212 (290)
-+.++.+.|.++|++|+++|..... .+.+...|.
T Consensus 15 ~~~~l~~~L~~~g~~v~v~~~~~~~-----~~~~~~~~~ 48 (355)
T cd03819 15 GTLELARALVERGHRSLVASAGGRL-----VAELEAEGS 48 (355)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCCch-----HHHHHhcCC
Confidence 3678899999999999999975432 233555565
No 336
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=23.03 E-value=2.1e+02 Score=26.72 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCC
Q 044563 173 MFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGY 212 (290)
Q Consensus 173 p~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy 212 (290)
|...++++.|+++|++++++..=.-......-+.+++.||
T Consensus 66 Pd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~g~ 105 (308)
T cd06593 66 PDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEKGY 105 (308)
T ss_pred CCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHCCe
Confidence 3456899999999999998765221122234455555564
No 337
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=22.63 E-value=1.4e+02 Score=28.30 Aligned_cols=51 Identities=16% Similarity=0.212 Sum_probs=38.6
Q ss_pred hcCcCcHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecC
Q 044563 167 AKHLKHMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLD 223 (290)
Q Consensus 167 ~~apaip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~ 223 (290)
+..++.||=..-=..+.+.|+..+.||..+..... +.|++.||. | +|++.+
T Consensus 68 sPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~---d~l~~~g~G-Y--Iivk~D 118 (277)
T PRK00994 68 SPNPAAPGPKKAREILKAAGIPCIVIGDAPGKKVK---DAMEEQGLG-Y--IIVKAD 118 (277)
T ss_pred CCCCCCCCchHHHHHHHhcCCCEEEEcCCCccchH---HHHHhcCCc-E--EEEecC
Confidence 45677777777667788999999999999865433 899999994 3 555543
No 338
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=22.54 E-value=1.3e+02 Score=33.54 Aligned_cols=71 Identities=14% Similarity=0.177 Sum_probs=45.9
Q ss_pred HHHHHHHHHhCCCeEEEecCCCcc----------chHHHHHHHHhCCCCCCCcceeecCcccCcchHHhhHHHHHHHHhc
Q 044563 175 TLKLFMKLQVRGWPVILLSRKHEG----------QRNATTELLISAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKE 244 (290)
Q Consensus 175 ~l~l~~~l~~~Gv~V~~iSgR~e~----------~r~~T~~NL~~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~ 244 (290)
..+.++.+.++|.+|+-+--|.-. .|+.-++||.=.|+ +.|..+- +++ -| +.=+++++.
T Consensus 603 ~~~~~~~~a~~G~RVLalA~k~l~~~~~~~~~~~~r~~~E~~L~flGl-----i~~~d~l--r~~---~~-~~I~~l~~a 671 (1054)
T TIGR01657 603 YQEVLKSYTREGYRVLALAYKELPKLTLQKAQDLSRDAVESNLTFLGF-----IVFENPL--KPD---TK-EVIKELKRA 671 (1054)
T ss_pred HHHHHHHHHhcCCEEEEEEEeecCccchhhhhhccHHHHhcCceEEEE-----EEEecCC--Ccc---HH-HHHHHHHHC
Confidence 445678899999999998877421 24444556665565 3444221 121 12 233467789
Q ss_pred CCeEEEEeCCCc
Q 044563 245 GFHITGLISNQM 256 (290)
Q Consensus 245 GYrIv~~iGDq~ 256 (290)
|.++++.-||+.
T Consensus 672 gi~v~miTGD~~ 683 (1054)
T TIGR01657 672 SIRTVMITGDNP 683 (1054)
T ss_pred CCeEEEECCCCH
Confidence 999999999984
No 339
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=22.51 E-value=4.6e+02 Score=22.50 Aligned_cols=38 Identities=24% Similarity=0.176 Sum_probs=28.1
Q ss_pred cHHHHHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhC
Q 044563 172 HMFTLKLFMKLQVRGWPVILLSRKHEGQRNATTELLISA 210 (290)
Q Consensus 172 ip~~l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~ 210 (290)
..-+.+|++.+..+|.+||++-++++. -+...++|++.
T Consensus 32 ~dl~~~ll~~~~~~~~~v~llG~~~~~-~~~~~~~l~~~ 69 (171)
T cd06533 32 SDLMPALLELAAQKGLRVFLLGAKPEV-LEKAAERLRAR 69 (171)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCCHHH-HHHHHHHHHHH
Confidence 344678999999999999999776654 34455677764
No 340
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=22.43 E-value=1.8e+02 Score=26.66 Aligned_cols=50 Identities=14% Similarity=0.139 Sum_probs=28.4
Q ss_pred cHHHHHHHHHHHhCCCeEEEecCCCccc----hHHHHHHHHhCCCCCCCcceeecCc
Q 044563 172 HMFTLKLFMKLQVRGWPVILLSRKHEGQ----RNATTELLISAGYRGWSSLIMRLDN 224 (290)
Q Consensus 172 ip~~l~l~~~l~~~Gv~V~~iSgR~e~~----r~~T~~NL~~~Gy~~~d~LiLR~~~ 224 (290)
...|..|...|+++|++|.|+.-.++.. .+.-.+.|++.|+. .+.+-.++
T Consensus 48 ~saMRhfa~~L~~~G~~V~Y~~~~~~~~~~s~~~~L~~~~~~~~~~---~~~~~~P~ 101 (224)
T PF04244_consen 48 FSAMRHFADELRAKGFRVHYIELDDPENTQSFEDALARALKQHGID---RLHVMEPG 101 (224)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-TT-TT--SSHHHHHHHHHHHH-------EEEE--S
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCccccccHHHHHHHHHHHcCCC---EEEEECCC
Confidence 3458889999999999999999986533 45555667777764 44444333
No 341
>smart00463 SMR Small MutS-related domain.
Probab=22.26 E-value=1.5e+02 Score=21.84 Aligned_cols=44 Identities=16% Similarity=0.223 Sum_probs=31.4
Q ss_pred cCcHHHHHHHHHHHhCCC--eEEEecCCCcc-------chHHHHHHHHhCCCC
Q 044563 170 LKHMFTLKLFMKLQVRGW--PVILLSRKHEG-------QRNATTELLISAGYR 213 (290)
Q Consensus 170 paip~~l~l~~~l~~~Gv--~V~~iSgR~e~-------~r~~T~~NL~~~Gy~ 213 (290)
.|+.-..++++.+.+.|. .+.+||||-.. .+....++|...+|+
T Consensus 13 eA~~~l~~~l~~~~~~~~~~~~~II~G~G~~s~~g~~~i~~~l~~~l~~~~~~ 65 (80)
T smart00463 13 EALTALDKFLNNARLKGLEQKLVIITGKGKHSLGGKSGVKPALKEHLRVESFR 65 (80)
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEEEcccCCCccchhhHHHHHHhchhhcccc
Confidence 456667888999999997 78899998532 245555666666665
No 342
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=22.09 E-value=1.8e+02 Score=21.43 Aligned_cols=44 Identities=11% Similarity=0.206 Sum_probs=34.2
Q ss_pred CcHHHHHHHHHHH-hCCCeEEEecCCCccchHHHHHHHHhCCCCCCCc
Q 044563 171 KHMFTLKLFMKLQ-VRGWPVILLSRKHEGQRNATTELLISAGYRGWSS 217 (290)
Q Consensus 171 aip~~l~l~~~l~-~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~ 217 (290)
.+|...++++.+. ..++.|++||-- ..++...+.+++.+++ |..
T Consensus 19 ~~~~l~~l~~~~~~~~~v~~v~Vs~d--~~~~~~~~~~~~~~~~-~~~ 63 (95)
T PF13905_consen 19 ELPKLKELYKKYKKKDDVEFVFVSLD--EDEEEWKKFLKKNNFP-WYN 63 (95)
T ss_dssp HHHHHHHHHHHHTTTTTEEEEEEE-S--SSHHHHHHHHHTCTTS-SEE
T ss_pred HHHHHHHHHHHhCCCCCEEEEEEEeC--CCHHHHHHHHHhcCCC-ceE
Confidence 4677888999988 888999999984 4577888999999774 543
No 343
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=22.01 E-value=4.3e+02 Score=21.36 Aligned_cols=72 Identities=11% Similarity=0.046 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhCCCeEEEecCC------CccchHHHHHHHHhCCCCCCCcceeecCcccCcchHHhhHHHHHHHHhcCC
Q 044563 173 MFTLKLFMKLQVRGWPVILLSRK------HEGQRNATTELLISAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGF 246 (290)
Q Consensus 173 p~~l~l~~~l~~~Gv~V~~iSgR------~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GY 246 (290)
+....+.+.|+..|++++....+ ....-...++-++.+-....+.++|=+.+.. |- ..-++++++|.
T Consensus 52 ~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~D------f~-~~i~~lr~~G~ 124 (149)
T cd06167 52 ERQRGFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELAYKRRIDTIVLVSGDSD------FV-PLVERLRELGK 124 (149)
T ss_pred hhHHHHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHhhhcCCCEEEEEECCcc------HH-HHHHHHHHcCC
Confidence 45667788888888888877643 1122334444443333324556666533321 22 33345666788
Q ss_pred eEEEE
Q 044563 247 HITGL 251 (290)
Q Consensus 247 rIv~~ 251 (290)
+|+..
T Consensus 125 ~V~v~ 129 (149)
T cd06167 125 RVIVV 129 (149)
T ss_pred EEEEE
Confidence 77754
No 344
>PF05226 CHASE2: CHASE2 domain; InterPro: IPR007890 CHASE2 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE2 domains are found in histidine kinases, adenylate cyclases, serine/threonine kinases and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE2 domains are not known at this time [].
Probab=21.93 E-value=2.6e+02 Score=25.84 Aligned_cols=15 Identities=47% Similarity=0.762 Sum_probs=12.7
Q ss_pred CCcEEEEeccc-cccc
Q 044563 129 GLDVVLMDIDD-IFAS 143 (290)
Q Consensus 129 g~~AvVfDIDe-tLsn 143 (290)
.++.+|+|||| +|..
T Consensus 40 ~~~iviV~ID~~Sl~~ 55 (310)
T PF05226_consen 40 DPDIVIVDIDDESLAE 55 (310)
T ss_pred CCCEEEEEECHHHHHH
Confidence 56799999999 8863
No 345
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=21.59 E-value=1.6e+02 Score=27.75 Aligned_cols=79 Identities=15% Similarity=0.136 Sum_probs=44.8
Q ss_pred cCcHHHHHHHHHHHhCCCeEEEecCCCccch---------HHHHH-----H--HHhCC---CCCCCcceeecCcccCcch
Q 044563 170 LKHMFTLKLFMKLQVRGWPVILLSRKHEGQR---------NATTE-----L--LISAG---YRGWSSLIMRLDNEMQMDS 230 (290)
Q Consensus 170 paip~~l~l~~~l~~~Gv~V~~iSgR~e~~r---------~~T~~-----N--L~~~G---y~~~d~LiLR~~~~~~~~~ 230 (290)
|....+..|...++++|++|++++-.+-..+ ..+.. | +.... ++++|-++||...+... .
T Consensus 15 ~~~~st~~L~~aa~~rG~~v~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~v~~R~~~~~~~-~ 93 (312)
T TIGR01380 15 IGKDTTFALMEEAQKRGHELFFYEPGDLSVVNGEVFARARPVRVGPNKQDWYTLGEKVRLSLGELDAVLMRKDPPFDM-E 93 (312)
T ss_pred CCcChHHHHHHHHHHcCCEEEEEehhheEEECCEEEEEEEEEEeccCCcceeecCcccccccccCCEEEEeCCCCCCh-h
Confidence 4445688999999999999999987642211 12221 1 11111 33568899996543211 1
Q ss_pred HHhhHHHHHHHHhcCCeEE
Q 044563 231 REYLSRRRTILQKEGFHIT 249 (290)
Q Consensus 231 ~~yKs~~R~~i~~~GYrIv 249 (290)
..|-...-+.++..|-+++
T Consensus 94 ~~~~~~~l~~le~~g~~vi 112 (312)
T TIGR01380 94 YIYATYLLELADPTGTLVI 112 (312)
T ss_pred hhHHHHHHHHHHhCCCeEE
Confidence 1233445556666676543
No 346
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=21.58 E-value=2.9e+02 Score=20.04 Aligned_cols=46 Identities=13% Similarity=0.081 Sum_probs=24.6
Q ss_pred chHHHHHHHHhCCCCCCCcceeecCcccCcchHHhhHHHHHHHHhcCCeEEEEeCCC
Q 044563 199 QRNATTELLISAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGFHITGLISNQ 255 (290)
Q Consensus 199 ~r~~T~~NL~~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GYrIv~~iGDq 255 (290)
..-...+.|++.||.. .+.++.. + .+. +.+.-.+.|++++..+|+.
T Consensus 16 ~a~~~~~~Lr~~g~~v--~~d~~~~----~----~~~-~~~~a~~~g~~~~iiig~~ 61 (91)
T cd00860 16 YAKEVAKKLSDAGIRV--EVDLRNE----K----LGK-KIREAQLQKIPYILVVGDK 61 (91)
T ss_pred HHHHHHHHHHHCCCEE--EEECCCC----C----HHH-HHHHHHHcCCCEEEEECcc
Confidence 3445567777777741 1112211 1 122 2223356899999999965
No 347
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=21.52 E-value=1.7e+02 Score=25.46 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=23.9
Q ss_pred HHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCCC
Q 044563 176 LKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAGY 212 (290)
Q Consensus 176 l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy 212 (290)
..+.+.|.++|.+|+++.+|.+..+....+.++..|.
T Consensus 17 ~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~ 53 (246)
T PRK12938 17 TSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGF 53 (246)
T ss_pred HHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCC
Confidence 4566777788888877766665555555566655553
No 348
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=21.36 E-value=2e+02 Score=24.97 Aligned_cols=20 Identities=20% Similarity=0.512 Sum_probs=12.8
Q ss_pred EeehHHHHHHHHHHHHHHHH
Q 044563 25 IFIGGLITVGVLLITLLVTL 44 (290)
Q Consensus 25 i~~~~~~~~~~~~~~ll~~~ 44 (290)
+|+|=.+|+++.++.++...
T Consensus 9 lFlaK~vTvVvaI~~vv~~I 28 (155)
T PF08496_consen 9 LFLAKIVTVVVAILAVVGLI 28 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47777777777666554444
No 349
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=21.28 E-value=2.8e+02 Score=21.14 Aligned_cols=63 Identities=17% Similarity=0.124 Sum_probs=38.5
Q ss_pred CcCcHHHHHHHHHHHhCC-CeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCcccCcchHHhhHHHHHHHHhcCCe
Q 044563 169 HLKHMFTLKLFMKLQVRG-WPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGFH 247 (290)
Q Consensus 169 apaip~~l~l~~~l~~~G-v~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GYr 247 (290)
....+...+++++|.+.| ++|.... ..++..|+..-+.++ ..+..... -..-.+++.+||+
T Consensus 57 ~~~~~~~~~~l~~l~~~g~v~i~~C~-----------~~~~~~g~~~~~~l~--~~~~~~~g-----~~~l~~l~~~g~~ 118 (122)
T PF02635_consen 57 PEGDPPLQELLKELKEAGGVKIYVCE-----------TCLKARGLDEKEDLI--GVGVVPSG-----MDELAELQAEGYA 118 (122)
T ss_dssp GCTSHCHHHHHHHHHHTTT-EEEEEH-----------HHHHHTT-CCGGGBH--TSTEEEEH-----HHHHHHHHHCTSE
T ss_pred ccccccHHHHHHHHHhcCCcEEEEcH-----------HHHHHcCCCcHHhcC--cCCEEECC-----HHHHHHHHHcCCE
Confidence 345677889999999998 9988764 467788886333332 22221111 1234567789999
Q ss_pred EE
Q 044563 248 IT 249 (290)
Q Consensus 248 Iv 249 (290)
++
T Consensus 119 vi 120 (122)
T PF02635_consen 119 VI 120 (122)
T ss_dssp EE
T ss_pred Ee
Confidence 87
No 350
>COG5137 Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics]
Probab=21.05 E-value=16 Score=33.76 Aligned_cols=75 Identities=21% Similarity=0.210 Sum_probs=40.1
Q ss_pred CCCeEEEecCCCccchHHHHHHHHhCCCCCCCcceeecCcccCcchHHhhHHHHHHHHhcCCeEE-EEeCCCccccc
Q 044563 185 RGWPVILLSRKHEGQRNATTELLISAGYRGWSSLIMRLDNEMQMDSREYLSRRRTILQKEGFHIT-GLISNQMDALI 260 (290)
Q Consensus 185 ~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~~~d~LiLR~~~~~~~~~~~yKs~~R~~i~~~GYrIv-~~iGDq~sDl~ 260 (290)
.|++||+||+|.+.+.-+-+--..+.||++-..|. +..-...+--+.--.-.|.-+..++-.-. -++=|+-.|+.
T Consensus 90 ~gvTvILlsc~Y~g~eFvRvGYyVnney~gi~~~e-~~d~E~p~~kvd~~~v~r~ilaEkprvtrfnIvwDn~~d~d 165 (279)
T COG5137 90 FGVTVILLSCRYKGQEFVRVGYYVNNEYPGITKLE-KSDVEEPSEKVDEEDVEREILAEKPRVTRFNIVWDNDEDND 165 (279)
T ss_pred hceeEEEEEEeecCceeEEEEEEeccCCcchhhhh-hhhhcCCchhcCHHHHHHHHhccCCcceeeeeEecCCcccc
Confidence 48999999999988766555555666777664443 33333232222222234444433332222 23346655554
No 351
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=21.00 E-value=89 Score=19.17 Aligned_cols=9 Identities=33% Similarity=0.741 Sum_probs=5.8
Q ss_pred HHHHhhhhc
Q 044563 45 AVMLQSCQN 53 (290)
Q Consensus 45 ~~~l~~c~~ 53 (290)
+++|+.|++
T Consensus 17 ~~~LagCss 25 (25)
T PF08139_consen 17 LFMLAGCSS 25 (25)
T ss_pred HHHHhhccC
Confidence 356778863
No 352
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=20.95 E-value=8.4e+02 Score=25.15 Aligned_cols=104 Identities=13% Similarity=0.127 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhhhCCCCCCCcEEEEeccc-ccccChhhhhhccCC---CC---ccchHHHHHhhcCcC---cHHHHHHHH
Q 044563 111 LSIQIVESYFNTLTPSYNGLDVVLMDIDD-IFASSSKYSNLLIDR---VN---VRGYIECIEEAKHLK---HMFTLKLFM 180 (290)
Q Consensus 111 ~v~~~A~~y~~~~~~~~~g~~AvVfDIDe-tLsn~~y~~~~~~G~---~~---~~~w~~Wv~~~~apa---ip~~l~l~~ 180 (290)
++++.+..++++. |...+.+.+.. -......|.+.+|-. |. ....++-+--+.+|+ .|-+-.+++
T Consensus 175 ~Ll~~l~e~a~~~-----G~~~i~L~V~~~N~~Ai~fY~klGf~~~~~y~~~d~~~~~~~~~~g~~~~~~l~~y~~~Ii~ 249 (547)
T TIGR03103 175 ALVRALAEHFQSR-----GCAYMDLSVMHDNEQAIALYEKLGFRRIPVFALKRKNAINERLFSGPAPEADLNPYARIIVD 249 (547)
T ss_pred HHHHHHHHHHHHC-----CCCEEEEEEcCCCHHHHHHHHHCCCEEeeEEEEeccCCcCcccccCCCcccccCHHHHHHHH
Confidence 3444444444432 34455555543 333334566554421 22 222344343455555 667788999
Q ss_pred HHHhCCCeEEEecCCCc-----------------------------cchHHHHHHHHhCCCCCCCcce
Q 044563 181 KLQVRGWPVILLSRKHE-----------------------------GQRNATTELLISAGYRGWSSLI 219 (290)
Q Consensus 181 ~l~~~Gv~V~~iSgR~e-----------------------------~~r~~T~~NL~~~Gy~~~d~Li 219 (290)
.++++|+.++.+..... ..+..|.+-|+++|+|.-....
T Consensus 250 ~a~~~Gi~~~~~~se~~~~~L~~g~~~~~~~~s~~~~~s~~ai~~~~DK~~tk~lL~~aGIpVP~~~~ 317 (547)
T TIGR03103 250 EARRRGIEVEVLDAEGGLFRLSLGGRSIRCRESLSELTSAVAMSLCDDKRLTRRLVSEAGLQVPEQQL 317 (547)
T ss_pred HHHHcCCcEEEECCCCCEEEecCCceEEEEEeccCCCCCHHHHHHhcCHHHHHHHHHHcCcCCCCEEE
Confidence 99999999887652211 2466788888889987444333
No 353
>COG0726 CDA1 Predicted xylanase/chitin deacetylase [Carbohydrate transport and metabolism]
Probab=20.94 E-value=1.1e+02 Score=26.62 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=26.6
Q ss_pred HHHHHHHHHhCCCe-EEEecCCCccchHHHHHHHHhCC----CCCCCcceee
Q 044563 175 TLKLFMKLQVRGWP-VILLSRKHEGQRNATTELLISAG----YRGWSSLIMR 221 (290)
Q Consensus 175 ~l~l~~~l~~~Gv~-V~~iSgR~e~~r~~T~~NL~~~G----y~~~d~LiLR 221 (290)
+-+++.-|++.|++ .||++|+.-..-...++-..+.| -++|++.-+.
T Consensus 80 ~~~il~iL~k~~i~ATfFv~g~~i~~~p~~~~~~~~~Gheig~H~~~h~~~~ 131 (267)
T COG0726 80 TPRILPLLKKYGIKATFFVVGSWIERNPDLVKRIAEAGHEIGNHGYDHPDLQ 131 (267)
T ss_pred cHHHHHHHHHcCCceEEEEehHhhHHCHHHHHHHHhccCeehhCcccCCCcc
Confidence 33455556666664 88888875444344444444454 4466665443
No 354
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=20.88 E-value=1.3e+02 Score=28.96 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhhhCCCCCCCcEEEEecccccccChhhhhhccCC--CCccchHHHHHhhcCcCcHHHHHHHHHHHhCCC
Q 044563 110 NLSIQIVESYFNTLTPSYNGLDVVLMDIDDIFASSSKYSNLLIDR--VNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGW 187 (290)
Q Consensus 110 ~~v~~~A~~y~~~~~~~~~g~~AvVfDIDetLsn~~y~~~~~~G~--~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv 187 (290)
+.|.+.+..+-+.-.| -|++++|+|=. .. .+. +|++.| |.|-+.++++.|+++|+
T Consensus 24 ~~v~~~~~~~r~~~iP----~d~i~lD~~~~--------~~-~~~f~~d~~~F----------Pdp~~~~mi~~L~~~G~ 80 (339)
T cd06602 24 DEVKEVVENMRAAGIP----LDVQWNDIDYM--------DR-RRDFTLDPVRF----------PGLKMPEFVDELHANGQ 80 (339)
T ss_pred HHHHHHHHHHHHhCCC----cceEEECcccc--------cC-ccceecccccC----------CCccHHHHHHHHHHCCC
Confidence 4455666666544333 25888887621 10 112 333333 33334889999999999
Q ss_pred eEEEecC
Q 044563 188 PVILLSR 194 (290)
Q Consensus 188 ~V~~iSg 194 (290)
+|+++..
T Consensus 81 k~~~~i~ 87 (339)
T cd06602 81 HYVPILD 87 (339)
T ss_pred EEEEEEe
Confidence 9998774
No 355
>PRK12743 oxidoreductase; Provisional
Probab=20.85 E-value=1.6e+02 Score=26.04 Aligned_cols=22 Identities=14% Similarity=0.141 Sum_probs=15.3
Q ss_pred HHHHHHHHhCCCeEEEecCCCc
Q 044563 176 LKLFMKLQVRGWPVILLSRKHE 197 (290)
Q Consensus 176 l~l~~~l~~~Gv~V~~iSgR~e 197 (290)
..+.+.+.++|++|+++..|++
T Consensus 16 ~~~a~~l~~~G~~V~~~~~~~~ 37 (256)
T PRK12743 16 KACALLLAQQGFDIGITWHSDE 37 (256)
T ss_pred HHHHHHHHHCCCEEEEEeCCCh
Confidence 4567777788888877765554
No 356
>PF00479 G6PD_N: Glucose-6-phosphate dehydrogenase, NAD binding domain; InterPro: IPR022674 Glucose-6-phosphate dehydrogenase (1.1.1.49 from EC) (G6PDH) is a ubiquitous protein, present in bacteria and all eukaryotic cell types []. The enzyme catalyses the the first step in the pentose pathway, i.e. the conversion of glucose-6-phosphate to gluconolactone 6-phosphate in the presence of NADP, producing NADPH. The ubiquitous expression of the enzyme gives it a major role in the production of NADPH for the many NADPH-mediated reductive processes in all cells []. Deficiency of G6PDH is a common genetic abnormality affecting millions of people worldwide. Many sequence variants, most caused by single point mutations, are known, exhibiting a wide variety of phenotypes []. This entry represents the NAD-binding domain of glucose-6-phosphate dehydrogenase.; GO: 0004345 glucose-6-phosphate dehydrogenase activity, 0050661 NADP binding, 0006006 glucose metabolic process, 0055114 oxidation-reduction process; PDB: 4EM5_C 4E9I_A 2DPG_A 1E77_A 1E7M_A 1H9B_A 1E7Y_A 1DPG_B 1H93_A 1H9A_A ....
Probab=20.77 E-value=88 Score=27.61 Aligned_cols=36 Identities=19% Similarity=0.353 Sum_probs=26.0
Q ss_pred CCCeEEEecCCCccchHHHHHHHHhCCCC----CCCcceee
Q 044563 185 RGWPVILLSRKHEGQRNATTELLISAGYR----GWSSLIMR 221 (290)
Q Consensus 185 ~Gv~V~~iSgR~e~~r~~T~~NL~~~Gy~----~~d~LiLR 221 (290)
.+-.|||++=-+ ..-..+.++|.++|.+ +|.++++-
T Consensus 104 ~~~rifYLAvPP-~~f~~i~~~L~~~~l~~~~~g~~RiVvE 143 (183)
T PF00479_consen 104 EANRIFYLAVPP-SLFGPIARNLSEAGLNEEPNGWSRIVVE 143 (183)
T ss_dssp TSEEEEEE-S-G-GGHHHHHHHHHHHT-S-TSSS-EEEEES
T ss_pred CcceEEEeccCH-HHHHHHHHHHHHHhcccccCCceEEEEe
Confidence 345899999877 4567889999999987 57899884
No 357
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=20.70 E-value=4.3e+02 Score=24.08 Aligned_cols=17 Identities=12% Similarity=0.102 Sum_probs=12.4
Q ss_pred HHHHHHHHhCCCeEEEe
Q 044563 176 LKLFMKLQVRGWPVILL 192 (290)
Q Consensus 176 l~l~~~l~~~Gv~V~~i 192 (290)
.+.++.+++.|++|+++
T Consensus 69 ~~~l~~~~~~~iPvV~~ 85 (302)
T TIGR02634 69 SNAVQEAKDEGIKVVAY 85 (302)
T ss_pred HHHHHHHHHCCCeEEEe
Confidence 45667777788887777
No 358
>COG5510 Predicted small secreted protein [Function unknown]
Probab=20.65 E-value=1.1e+02 Score=21.26 Aligned_cols=17 Identities=35% Similarity=0.759 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhhhh
Q 044563 36 LLITLLVTLAVMLQSCQ 52 (290)
Q Consensus 36 ~~~~ll~~~~~~l~~c~ 52 (290)
+++.+++..++.|..|.
T Consensus 7 l~i~~vll~s~llaaCN 23 (44)
T COG5510 7 LLIALVLLASTLLAACN 23 (44)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 45666777778888994
No 359
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=20.60 E-value=1.8e+02 Score=25.06 Aligned_cols=63 Identities=13% Similarity=0.135 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhhhCCCCCCCcEEEEecccccccChhhhhhccCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhC-CCe
Q 044563 110 NLSIQIVESYFNTLTPSYNGLDVVLMDIDDIFASSSKYSNLLIDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVR-GWP 188 (290)
Q Consensus 110 ~~v~~~A~~y~~~~~~~~~g~~AvVfDIDetLsn~~y~~~~~~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~-Gv~ 188 (290)
..+.++|..+++.+...+ +...+++|+++.-.. +.. .....+.+|++.++++ |.+
T Consensus 64 ~~a~~qA~~f~~~~~~~~-~~~~~~lD~E~~~~~------------~~~-----------~~~~~~~~f~~~v~~~~G~~ 119 (184)
T cd06525 64 SNPEEQAENFYNTIKGKK-MDLKPALDVEVNFGL------------SKD-----------ELNDYVLRFIEEFEKLSGLK 119 (184)
T ss_pred CCHHHHHHHHHHhccccC-CCCCeEEEEecCCCC------------CHH-----------HHHHHHHHHHHHHHHHHCCC
Confidence 346788888888766532 223578999883110 000 0123578899999998 999
Q ss_pred EEEecCCC
Q 044563 189 VILLSRKH 196 (290)
Q Consensus 189 V~~iSgR~ 196 (290)
+++-|++.
T Consensus 120 ~~iY~~~~ 127 (184)
T cd06525 120 VGIYTYTS 127 (184)
T ss_pred eEEEecHH
Confidence 99999976
No 360
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=20.60 E-value=1.8e+02 Score=27.73 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=26.2
Q ss_pred HHHHHHHHHhCC--CeEEEecCCCccchHHHHHHHHhCCCC
Q 044563 175 TLKLFMKLQVRG--WPVILLSRKHEGQRNATTELLISAGYR 213 (290)
Q Consensus 175 ~l~l~~~l~~~G--v~V~~iSgR~e~~r~~T~~NL~~~Gy~ 213 (290)
++.++..++++| ++|+..=+|+..+-..|.+.|.+.|.+
T Consensus 133 v~~~l~~A~~~~k~~~V~v~EsrP~~~G~~~a~~L~~~GI~ 173 (310)
T PRK08535 133 ALSVIKTAHEQGKDIEVIATETRPRNQGHITAKELAEYGIP 173 (310)
T ss_pred HHHHHHHHHHCCCeEEEEEecCCchhhHHHHHHHHHHCCCC
Confidence 455555655443 677777777766666677888888876
No 361
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=20.58 E-value=1.7e+02 Score=25.08 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=15.8
Q ss_pred HHHHHHHHhCCCeEEEecCCCcc
Q 044563 176 LKLFMKLQVRGWPVILLSRKHEG 198 (290)
Q Consensus 176 l~l~~~l~~~Gv~V~~iSgR~e~ 198 (290)
..+.+.+.+.|+.|++++.|++.
T Consensus 19 ~~l~~~l~~~G~~v~~~~~~~~~ 41 (248)
T PRK05557 19 RAIAERLAAQGANVVINYASSEA 41 (248)
T ss_pred HHHHHHHHHCCCEEEEEeCCchh
Confidence 45667777778888777766543
No 362
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=20.40 E-value=1.1e+02 Score=28.61 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=23.9
Q ss_pred CcHHHHHHHHHHHhCCCeEEEecCCCc
Q 044563 171 KHMFTLKLFMKLQVRGWPVILLSRKHE 197 (290)
Q Consensus 171 aip~~l~l~~~l~~~Gv~V~~iSgR~e 197 (290)
-.+.+++.++.++++|.+|+.||+.++
T Consensus 106 ~t~~~~~~~~~ak~~g~~vi~iT~~~~ 132 (326)
T PRK10892 106 ESSEILALIPVLKRLHVPLICITGRPE 132 (326)
T ss_pred CCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 357799999999999999999999853
No 363
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=20.38 E-value=1.5e+02 Score=26.03 Aligned_cols=35 Identities=29% Similarity=0.283 Sum_probs=21.6
Q ss_pred HHHHHHHHhCCCeEEEecCCCccchHHHHHHHHhCC
Q 044563 176 LKLFMKLQVRGWPVILLSRKHEGQRNATTELLISAG 211 (290)
Q Consensus 176 l~l~~~l~~~Gv~V~~iSgR~e~~r~~T~~NL~~~G 211 (290)
..+.+.+.++|++|++ ++|++...+.+.+.++..|
T Consensus 24 ~~ia~~l~~~G~~V~~-~~r~~~~~~~~~~~i~~~~ 58 (255)
T PRK07523 24 YALAEGLAQAGAEVIL-NGRDPAKLAAAAESLKGQG 58 (255)
T ss_pred HHHHHHHHHcCCEEEE-EeCCHHHHHHHHHHHHhcC
Confidence 3566777788888764 4666554445556665543
No 364
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=20.32 E-value=1.4e+02 Score=24.74 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=20.4
Q ss_pred CcCcHHHHHHHHHHHhCCCeEEEecCCC
Q 044563 169 HLKHMFTLKLFMKLQVRGWPVILLSRKH 196 (290)
Q Consensus 169 apaip~~l~l~~~l~~~Gv~V~~iSgR~ 196 (290)
.|.-..++.+..+++++|++|++++-++
T Consensus 14 ~~~kDTT~alm~eAq~RGhev~~~~~~d 41 (119)
T PF02951_consen 14 KPYKDTTFALMLEAQRRGHEVFYYEPGD 41 (119)
T ss_dssp -TTT-HHHHHHHHHHHTT-EEEEE-GGG
T ss_pred CCCCChHHHHHHHHHHCCCEEEEEEcCc
Confidence 3455678999999999999999987664
No 365
>PTZ00256 glutathione peroxidase; Provisional
Probab=20.18 E-value=2.6e+02 Score=24.05 Aligned_cols=87 Identities=15% Similarity=0.197 Sum_probs=47.1
Q ss_pred hhhCCCCCC-CcEEEEeccc-ccccChhhhhhc-cCCCCccchHHHHHhhcCcCcHHHHHHHHHHHhCCCeEEEecC---
Q 044563 121 NTLTPSYNG-LDVVLMDIDD-IFASSSKYSNLL-IDRVNVRGYIECIEEAKHLKHMFTLKLFMKLQVRGWPVILLSR--- 194 (290)
Q Consensus 121 ~~~~~~~~g-~~AvVfDIDe-tLsn~~y~~~~~-~G~~~~~~w~~Wv~~~~apaip~~l~l~~~l~~~Gv~V~~iSg--- 194 (290)
+++++..+. ++--+-|+|| +++...+ ..+. .=.++..+|-..... -+|...++++..+++|+.|+-|+-
T Consensus 11 ~~~~~~~~~~p~f~l~d~~G~~vsLs~~-~Gk~vvlv~n~atwCp~C~~----e~p~l~~l~~~~~~~gv~vv~vs~~~~ 85 (183)
T PTZ00256 11 EQIQPPTKSFFEFEAIDIDGQLVQLSKF-KGKKAIIVVNVACKCGLTSD----HYTQLVELYKQYKSQGLEILAFPCNQF 85 (183)
T ss_pred ccccCCCCcccceEeEcCCCCEEeHHHh-CCCcEEEEEEECCCCCchHH----HHHHHHHHHHHHhhCCcEEEEEecccc
Confidence 344443333 4455669999 6665433 2210 000234444322221 166777899999999999999983
Q ss_pred -CCcc-chHHHHHHHH-hCCC
Q 044563 195 -KHEG-QRNATTELLI-SAGY 212 (290)
Q Consensus 195 -R~e~-~r~~T~~NL~-~~Gy 212 (290)
..+. ..+...+.++ +.|+
T Consensus 86 ~~~~~~~~~~~~~f~~~~~~~ 106 (183)
T PTZ00256 86 MEQEPWDEPEIKEYVQKKFNV 106 (183)
T ss_pred cccCCCCHHHHHHHHHHhcCC
Confidence 2221 2345555554 5675
Done!