BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>044565
GGLRTFFATIVTTGLTEARAKIFGHVLNLTGQRSPHKILRKKLIDDKVAGWYPYDIKKDD
PLVMARQEQERLSKLEILKRRGKGPPKKGQGRRAAKRSK

High Scoring Gene Products

Symbol, full name Information P value
AT5G44710 protein from Arabidopsis thaliana 4.0e-26

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  044565
        (99 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2156359 - symbol:AT5G44710 "AT5G44710" species...   295  4.0e-26   1


>TAIR|locus:2156359 [details] [associations]
            symbol:AT5G44710 "AT5G44710" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0000394 "RNA splicing, via endonucleolytic
            cleavage and ligation" evidence=RCA] [GO:0009086 "methionine
            biosynthetic process" evidence=RCA] [GO:0016925 "protein
            sumoylation" evidence=RCA] EMBL:CP002688 InterPro:IPR013219
            Pfam:PF08293 EMBL:BT005627 EMBL:AK118238 IPI:IPI00521677
            RefSeq:NP_199284.2 UniGene:At.30058 PaxDb:Q8GXH5 PRIDE:Q8GXH5
            EnsemblPlants:AT5G44710.1 GeneID:834500 KEGG:ath:AT5G44710
            TAIR:At5g44710 eggNOG:NOG293912 InParanoid:Q8GXH5 OMA:WYPYDIK
            PhylomeDB:Q8GXH5 ProtClustDB:CLSN2680433 ArrayExpress:Q8GXH5
            Genevestigator:Q8GXH5 Uniprot:Q8GXH5
        Length = 102

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 59/99 (59%), Positives = 73/99 (73%)

Query:     1 GGLRTFFATIVTTGLTEARAKIFGHVLNLTGQRSPHKILRKKLIDDKVAGWYPYDIKKDD 60
             G L++  ++ V  G+TEARA+IFGH+LN TGQRSPHKILRKKLI DKVA WYPYDIK +D
Sbjct:     4 GSLKSLISSAVGRGVTEARARIFGHMLNPTGQRSPHKILRKKLIGDKVAEWYPYDIKNED 63

Query:    61 PLVMARQEQERLSKLEILXXXXXXXXXXXXXXXAAKRSK 99
             P V+AR+E+ER+SKLE+L               AAKR+K
Sbjct:    64 PNVLAREEKERISKLEMLKRRDKGPPKKGHGKRAAKRNK 102


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.137   0.394    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       99        84   0.00091  102 3  11 22  0.42    29
                                                     29  0.45    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  498 (53 KB)
  Total size of DFA:  88 KB (2066 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.07u 0.07s 9.14t   Elapsed:  00:00:01
  Total cpu time:  9.07u 0.07s 9.14t   Elapsed:  00:00:01
  Start:  Fri May 10 00:05:38 2013   End:  Fri May 10 00:05:39 2013

Back to top