BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044565
(99 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P53305|RT27_YEAST Mitochondral 37S ribosomal protein S27 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RSM27 PE=1
SV=1
Length = 110
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
Query: 15 LTEARAKIFGHVLNLTGQRSPHKILRKKLIDDKVAGWYPY-DIKK--------DDPLVMA 65
+ E AKIF N +G R+ KIL ++L VA +Y DI K D +
Sbjct: 11 VAELSAKIFDQNFNPSGIRTGSKILNERLKGPSVASYYGNPDILKFRHLKTLYPDIEFVD 70
Query: 66 RQEQERLSKLEILKRRGKGPPKK 88
+EQ RLS +E KRRGKG PKK
Sbjct: 71 LEEQYRLSMVEAKKRRGKGAPKK 93
>sp|A1B3P3|SYM_PARDP Methionine--tRNA ligase OS=Paracoccus denitrificans (strain Pd
1222) GN=metG PE=3 SV=1
Length = 572
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 13 TGLTEARAKIFGHVLNLTGQRSPHKILRKKLIDDKVAGWYPYDIKKDDPLVMARQEQERL 72
T L E R+ I G NL + + H LR++ + D++A W D K D P++ ++ L
Sbjct: 166 TDLIEPRSAISGST-NLEVRATKHLYLRQRSLKDRIAAW--IDSKTDWPILTTSIARKWL 222
Query: 73 SKLEILKRRG 82
+ + L+ RG
Sbjct: 223 NDGDGLQDRG 232
>sp|Q9D2R8|RT33_MOUSE 28S ribosomal protein S33, mitochondrial OS=Mus musculus GN=Mrps33
PE=2 SV=1
Length = 106
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 5/32 (15%)
Query: 66 RQEQERLSKLEILKRRGKGPPKKGQGRRAAKR 97
+ EQ RL KL RGKG P+KG+G+RA K+
Sbjct: 79 KDEQRRLKKL-----RGKGKPRKGEGKRATKK 105
>sp|Q8ZU97|ASSY_PYRAE Argininosuccinate synthase OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827) GN=argG
PE=3 SV=2
Length = 397
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 17 EARAKIFGHVLNLTGQRSPHKILRKKLIDDKVAGWYPYD 55
E R K++ L + G+ SP+ K+L D AGWYP D
Sbjct: 338 EVRVKLYKGSLWVVGRESPYGGYSKELADYS-AGWYPSD 375
>sp|A3LZ54|MED14_PICST Mediator of RNA polymerase II transcription subunit 14
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=RGR1 PE=3 SV=3
Length = 1112
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 15 LTEARAKIFGHVLNLTGQRSPHKILRKKLIDDKVAGWYPYD 55
LT+ + K+FG + NL+ + SP L+ L D++ ++ D
Sbjct: 768 LTQMKLKLFGKLRNLSIRNSPENFLQLNLKIDEIKNFFEID 808
>sp|Q8TZY2|SMC_PYRFU Chromosome partition protein Smc OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=smc PE=1 SV=2
Length = 1177
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 26/40 (65%)
Query: 39 LRKKLIDDKVAGWYPYDIKKDDPLVMARQEQERLSKLEIL 78
L ++L+ D ++G YD KK+ L +Q +E L+++++L
Sbjct: 157 LERRLLIDDISGIAEYDSKKEKALEELKQAEENLARVDLL 196
>sp|P82926|RT33_BOVIN 28S ribosomal protein S33, mitochondrial OS=Bos taurus GN=MRPS33
PE=1 SV=2
Length = 106
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 5/32 (15%)
Query: 66 RQEQERLSKLEILKRRGKGPPKKGQGRRAAKR 97
+ EQ RL KL RGK P+KG+G+RAAK+
Sbjct: 79 KDEQLRLKKL-----RGKVKPRKGEGKRAAKK 105
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.138 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,682,935
Number of Sequences: 539616
Number of extensions: 1379001
Number of successful extensions: 3590
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3582
Number of HSP's gapped (non-prelim): 13
length of query: 99
length of database: 191,569,459
effective HSP length: 68
effective length of query: 31
effective length of database: 154,875,571
effective search space: 4801142701
effective search space used: 4801142701
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)