Query 044565
Match_columns 99
No_of_seqs 104 out of 173
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 07:29:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044565.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044565hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2g48_C Islet amyloid polypepti 18.3 71 0.0024 17.5 1.8 24 11-34 11-34 (37)
2 3lph_A Protein REV; helix-loop 14.3 77 0.0026 19.8 1.5 19 9-27 48-66 (72)
3 2x7l_M HIV REV; nuclear export 13.7 1.1E+02 0.0037 20.7 2.2 20 9-28 45-64 (115)
4 1gcc_A Ethylene responsive ele 13.6 1E+02 0.0035 18.0 1.9 28 58-85 28-55 (63)
5 1pq1_B BCL2-like protein 11; B 13.0 13 0.00046 20.0 -2.0 18 39-56 8-27 (33)
6 2ntx_A EMB|CAB41934.1, prone8; 12.7 1.8E+02 0.0063 23.1 3.6 45 10-54 39-89 (365)
7 2wh6_B BCL-2-like protein 11; 9.9 59 0.002 16.5 -0.1 16 39-54 8-25 (26)
8 3euj_B Chromosome partition pr 9.2 68 0.0023 22.7 0.0 18 36-54 4-21 (152)
9 3ts3_A Capsid polyprotein; vir 8.5 67 0.0023 23.5 -0.3 35 22-56 88-125 (208)
10 3kj0_B BCL-2-like protein 11; 7.0 53 0.0018 16.8 -1.0 16 39-54 10-27 (27)
No 1
>2g48_C Islet amyloid polypeptide; protein-peptide complex, hydrolase; 2.60A {Homo sapiens} PDB: 2kb8_A 3hgz_D 2l86_A 2kj7_A
Probab=18.27 E-value=71 Score=17.50 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhhhCcCCCCCCCCc
Q 044565 11 VTTGLTEARAKIFGHVLNLTGQRS 34 (99)
Q Consensus 11 r~~~l~~ls~rIFg~~~nPt~~Rs 34 (99)
||..+-.=|..+++.+|-||++=+
T Consensus 11 rla~~LsrSg~~~~~nf~PT~VGs 34 (37)
T 2g48_C 11 RLANFLVHSSNNFGAILSSTNVGS 34 (37)
T ss_pred HHHHHHHhhccccccccCCCcCCC
Confidence 555555567778999999998743
No 2
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=14.31 E-value=77 Score=19.81 Aligned_cols=19 Identities=11% Similarity=0.039 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhhhCcCC
Q 044565 9 TIVTTGLTEARAKIFGHVL 27 (99)
Q Consensus 9 ~~r~~~l~~ls~rIFg~~~ 27 (99)
.+|-.++..||.+||.+.+
T Consensus 48 R~RQrQI~~is~rIl~t~l 66 (72)
T 3lph_A 48 RERQRQIHSISERIRSTYL 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4677889999999998765
No 3
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=13.75 E-value=1.1e+02 Score=20.70 Aligned_cols=20 Identities=10% Similarity=0.130 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhhhCcCCC
Q 044565 9 TIVTTGLTEARAKIFGHVLN 28 (99)
Q Consensus 9 ~~r~~~l~~ls~rIFg~~~n 28 (99)
++|-.++..||.+|+.+.+.
T Consensus 45 R~RQrQI~~iseRILst~lg 64 (115)
T 2x7l_M 45 RERQRQIHSISERILSTYLG 64 (115)
T ss_dssp HHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHhcccCC
Confidence 46788999999999998764
No 4
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=13.64 E-value=1e+02 Score=17.96 Aligned_cols=28 Identities=7% Similarity=-0.064 Sum_probs=23.5
Q ss_pred ccCCCCcChHHHHHHHHHHHHHhcCCCC
Q 044565 58 KDDPLVMARQEQERLSKLEILKRRGKGP 85 (99)
Q Consensus 58 r~~g~~~De~e~~R~~~~~~~k~RGKg~ 85 (99)
-++|.|..++|.-+--.....+.+|..+
T Consensus 28 ~~LGtf~T~eeAA~AyD~Aa~~~~G~~a 55 (63)
T 1gcc_A 28 VWLGTFETAEDAALAYDRAAFRMRGSRA 55 (63)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHSSCC
T ss_pred EEeeeCCCHHHHHHHHHHHHHHhcCccc
Confidence 3567799999999998899999999764
No 5
>1pq1_B BCL2-like protein 11; BCL-XL/BIM, apoptosis; 1.65A {Mus musculus}
Probab=12.96 E-value=13 Score=19.98 Aligned_cols=18 Identities=22% Similarity=0.433 Sum_probs=13.4
Q ss_pred hhccc--cchhhhccCCCCC
Q 044565 39 LRKKL--IDDKVAGWYPYDI 56 (99)
Q Consensus 39 lr~~l--kg~~~~~YYP~~~ 56 (99)
+.|.| +|.+..+|||..+
T Consensus 8 IAQELRRIGDeFNa~ypRR~ 27 (33)
T 1pq1_B 8 IAQELRRIGDEFNETYTRRV 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHhhcccchHH
Confidence 45556 6899999999743
No 6
>2ntx_A EMB|CAB41934.1, prone8; dimer, guanine nucleotide exchange factor, signaling protein; HET: MSE; 2.20A {Arabidopsis thaliana} PDB: 2nty_A* 2wbl_A
Probab=12.66 E-value=1.8e+02 Score=23.14 Aligned_cols=45 Identities=20% Similarity=0.404 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhhCcCCCCCCCCchhhHh-hccc-----cchhhhccCCC
Q 044565 10 IVTTGLTEARAKIFGHVLNLTGQRSPHKIL-RKKL-----IDDKVAGWYPY 54 (99)
Q Consensus 10 ~r~~~l~~ls~rIFg~~~nPt~~Rsg~kvl-r~~l-----kg~~~~~YYP~ 54 (99)
|....+.-|+|.|||+.++-+-.-..+|.+ ++.. ....|+.+.|.
T Consensus 39 AiSNAITNL~AsvFGe~~rLEPl~~ekK~~WrrEmdwLLsv~d~IVE~vPs 89 (365)
T 2ntx_A 39 ALSNAITNLAASIFGEQTKLQPMPQDRQARWKKEIDWLLSVTDHIVEFVPS 89 (365)
T ss_dssp HHHHHHHHHHHHHHTTC-CCCCCCHHHHHHHHHHHHHHHGGGGGCEEEEEC
T ss_pred HHHhhhhHHHHHHhhhhhccCCCChHHHHHHHHhcceeeeccceeEEeccc
Confidence 556678999999999999988777777763 3222 35677777775
No 7
>2wh6_B BCL-2-like protein 11; mitochondrion, early protein, transmembrane, viral protein,; 1.50A {Homo sapiens} PDB: 2v6q_B 2nl9_B 3fdl_B 3io8_B 2vm6_B 3io9_B 3d7v_B 3kj1_B 3kz0_C 3kj2_B
Probab=9.88 E-value=59 Score=16.51 Aligned_cols=16 Identities=25% Similarity=0.617 Sum_probs=8.8
Q ss_pred hhccc--cchhhhccCCC
Q 044565 39 LRKKL--IDDKVAGWYPY 54 (99)
Q Consensus 39 lr~~l--kg~~~~~YYP~ 54 (99)
+.|.| +|.+...|||.
T Consensus 8 iAqELRRIGDeFN~~y~r 25 (26)
T 2wh6_B 8 IAQELRRIGDEFNAYYAR 25 (26)
T ss_dssp HHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHhHHHhhhccC
Confidence 44555 57888888875
No 8
>3euj_B Chromosome partition protein MUKF; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_E*
Probab=9.24 E-value=68 Score=22.67 Aligned_cols=18 Identities=6% Similarity=0.479 Sum_probs=0.0
Q ss_pred hhHhhccccchhhhccCCC
Q 044565 36 HKILRKKLIDDKVAGWYPY 54 (99)
Q Consensus 36 ~kvlr~~lkg~~~~~YYP~ 54 (99)
|.||+|||+ .+|.+|+-.
T Consensus 4 NRvFsQRLR-qSi~~Yfd~ 21 (152)
T 3euj_B 4 NRVFGQRLR-QSIQNYFSS 21 (152)
T ss_dssp -------------------
T ss_pred hHHHHHHHH-HHHHHhccC
Confidence 467888884 678888854
No 9
>3ts3_A Capsid polyprotein; virus protein, projection domain, astrovirus capsid, viral P; 1.49A {Turkey astrovirus 2}
Probab=8.51 E-value=67 Score=23.54 Aligned_cols=35 Identities=20% Similarity=0.373 Sum_probs=21.3
Q ss_pred hhCcCCCCCCCCchhhHhhcccc---chhhhccCCCCC
Q 044565 22 IFGHVLNLTGQRSPHKILRKKLI---DDKVAGWYPYDI 56 (99)
Q Consensus 22 IFg~~~nPt~~Rsg~kvlr~~lk---g~~~~~YYP~~~ 56 (99)
|||+..--.++=---|-|.+..+ .|+|..|||...
T Consensus 88 iFgqp~~GvGVIqTmKTLkqhikd~tePavkkyyP~Tt 125 (208)
T 3ts3_A 88 LFGQPRLGVGVMQTMKTLKQHIKDYTEPAIQKYYPGTT 125 (208)
T ss_dssp EEECGGGCCCEEEEHHHHTTTTTCTTSTTEEEBCGGGC
T ss_pred EecccccccchhhhHHHHHHHhcccccchhhhcCCCcc
Confidence 66654443333222345777775 489999999743
No 10
>3kj0_B BCL-2-like protein 11; BH3, apoptosis, protein-peptide complex, alternative splicing, cytoplasm, developmental protein, differentiation; 1.70A {Homo sapiens} PDB: 2pqk_B
Probab=6.98 E-value=53 Score=16.80 Aligned_cols=16 Identities=25% Similarity=0.559 Sum_probs=10.2
Q ss_pred hhccc--cchhhhccCCC
Q 044565 39 LRKKL--IDDKVAGWYPY 54 (99)
Q Consensus 39 lr~~l--kg~~~~~YYP~ 54 (99)
+.|.| +|.+...|||.
T Consensus 10 iAqELRRIGDeFN~~y~r 27 (27)
T 3kj0_B 10 YAQELRRIGDEFNAYYAR 27 (27)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhhccC
Confidence 44445 57777777763
Done!