Query 044565
Match_columns 99
No_of_seqs 104 out of 173
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 07:29:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044565.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044565hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gcca_ d.10.1.2 (A:) GCC-box 25.3 20 0.0014 20.0 2.1 27 59-85 29-55 (63)
2 d1kopa_ b.74.1.1 (A:) Carbonic 10.4 67 0.0049 20.9 2.1 26 14-39 197-222 (223)
3 d1mlwa_ d.178.1.1 (A:) Tryptop 7.6 1.7E+02 0.012 20.7 3.4 21 58-78 28-48 (290)
4 d1z0jb1 a.2.19.1 (B:734-784) F 7.3 93 0.0068 16.5 1.5 30 11-43 6-36 (51)
5 d1gxha_ a.28.2.1 (A:) ImmE8 (I 6.5 2.6E+02 0.019 16.2 3.7 44 39-89 42-85 (85)
6 d1j8ua_ d.178.1.1 (A:) Phenyla 6.3 2.1E+02 0.015 20.4 3.4 20 58-77 27-46 (307)
7 d2i8da1 d.198.4.1 (A:2-122) Un 6.1 1.5E+02 0.011 17.5 2.1 26 3-28 7-32 (121)
8 d1wl8a1 c.23.16.1 (A:1-188) GM 6.0 83 0.0061 19.2 0.9 21 21-41 159-181 (188)
9 d1ka9h_ c.23.16.1 (H:) GAT sub 6.0 51 0.0037 19.9 -0.2 20 21-40 169-189 (195)
10 d1toha_ d.178.1.1 (A:) Tyrosin 5.9 2.2E+02 0.016 20.5 3.4 20 58-77 28-47 (336)
No 1
>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=25.34 E-value=20 Score=20.01 Aligned_cols=27 Identities=7% Similarity=-0.045 Sum_probs=24.0
Q ss_pred cCCCCcChHHHHHHHHHHHHHhcCCCC
Q 044565 59 DDPLVMARQEQERLSKLEILKRRGKGP 85 (99)
Q Consensus 59 ~~g~~~De~e~~R~~~~~~~k~RGKg~ 85 (99)
++|.|..|+|.-|-=.....+.||..+
T Consensus 29 ~LGtf~t~eeAArAYD~aa~~~~G~~a 55 (63)
T d1gcca_ 29 WLGTFETAEDAALAYDRAAFRMRGSRA 55 (63)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHSSCC
T ss_pred ccccccCHHHHHHHHHHHHHHhcCCCc
Confidence 578899999999999999999999765
No 2
>d1kopa_ b.74.1.1 (A:) Carbonic anhydrase {Neisseria gonorrhoeae [TaxId: 485]}
Probab=10.39 E-value=67 Score=20.94 Aligned_cols=26 Identities=0% Similarity=-0.132 Sum_probs=20.6
Q ss_pred HHHHHHHhhhCcCCCCCCCCchhhHh
Q 044565 14 GLTEARAKIFGHVLNLTGQRSPHKIL 39 (99)
Q Consensus 14 ~l~~ls~rIFg~~~nPt~~Rsg~kvl 39 (99)
+|+.++.-++...++|+..-+++.||
T Consensus 197 Ql~~~~~~~~~~N~Rp~Q~ln~R~V~ 222 (223)
T d1kopa_ 197 QAEKFTRAVGSENNRPVQPLNARVVI 222 (223)
T ss_dssp HHHHHHHHHSSCCCCCCCCCTTCCCB
T ss_pred HHHHHHHhccCCCCCCCCCCCCCEec
Confidence 66677666778889999988888776
No 3
>d1mlwa_ d.178.1.1 (A:) Tryptophan hydroxylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.59 E-value=1.7e+02 Score=20.70 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=12.4
Q ss_pred ccCCCCcChHHHHHHHHHHHH
Q 044565 58 KDDPLVMARQEQERLSKLEIL 78 (99)
Q Consensus 58 r~~g~~~De~e~~R~~~~~~~ 78 (99)
..+|.|.|+.=..|-+++...
T Consensus 28 ~dhpgf~d~~yr~rR~~~a~~ 48 (290)
T d1mlwa_ 28 ADHPGFKDNVYRKRRKYFADL 48 (290)
T ss_dssp TTSTTTTCHHHHHHHHHHHHH
T ss_pred CCCCCCCChHHHHHHHHHHHH
Confidence 455668887655555555443
No 4
>d1z0jb1 a.2.19.1 (B:734-784) FYVE finger-containing Rab5 effector protein rabenosyn-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.34 E-value=93 Score=16.54 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhhhCcCCCCCCCCchh-hHhhccc
Q 044565 11 VTTGLTEARAKIFGHVLNLTGQRSPH-KILRKKL 43 (99)
Q Consensus 11 r~~~l~~ls~rIFg~~~nPt~~Rsg~-kvlr~~l 43 (99)
.++++.-+.+-||..- ...|+-. -+|++.|
T Consensus 6 llqqidnikayifdak---~~gr~deve~ltenl 36 (51)
T d1z0jb1 6 LLQQIDNIKAYIFDAK---QCGRLDEVEVLTENL 36 (51)
T ss_dssp HHHHHHHHHHHHHHHH---HSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhH---hcCchhHHHHHHHHH
Confidence 4788999999999842 2233333 2365555
No 5
>d1gxha_ a.28.2.1 (A:) ImmE8 (Im8) {Escherichia coli [TaxId: 562]}
Probab=6.50 E-value=2.6e+02 Score=16.18 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=29.5
Q ss_pred hhccccchhhhccCCCCCcccCCCCcChHHHHHHHHHHHHHhcCCCCCCCC
Q 044565 39 LRKKLIDDKVAGWYPYDIKKDDPLVMARQEQERLSKLEILKRRGKGPPKKG 89 (99)
Q Consensus 39 lr~~lkg~~~~~YYP~~~~r~~g~~~De~e~~R~~~~~~~k~RGKg~PKKg 89 (99)
+.+.|.|..+. |||..-.. |.-|---.+..+.|..-||.--|+|
T Consensus 42 iteHP~gsDLI-fYP~~~~e------dsPegIv~~IKeWRa~nG~PgFK~g 85 (85)
T d1gxha_ 42 VTEHPSGSDLI-YYPEGNND------GSPEAVIKEIKEWRAANGKSGFKQG 85 (85)
T ss_dssp TTCCTTTTHHH-HSCCSSCS------SCTHHHHHHHHHHHHHTTCCCSCCC
T ss_pred hcCCCCCCcee-eeCCCCCC------CCHHHHHHHHHHHHHHcCCccccCC
Confidence 77788777665 78874311 4445555666778888898877765
No 6
>d1j8ua_ d.178.1.1 (A:) Phenylalanine hydroxylase, PAH {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.25 E-value=2.1e+02 Score=20.37 Aligned_cols=20 Identities=15% Similarity=0.086 Sum_probs=11.4
Q ss_pred ccCCCCcChHHHHHHHHHHH
Q 044565 58 KDDPLVMARQEQERLSKLEI 77 (99)
Q Consensus 58 r~~g~~~De~e~~R~~~~~~ 77 (99)
..+|.|.|..=..|-++++.
T Consensus 27 ~dhpgf~d~~yr~rR~~~a~ 46 (307)
T d1j8ua_ 27 ADHPGFKDPVYRARRKQFAD 46 (307)
T ss_dssp TTSTTTTCHHHHHHHHHHHH
T ss_pred CCCCCCCChHHHHHHHHHHH
Confidence 45566777755555554444
No 7
>d2i8da1 d.198.4.1 (A:2-122) Uncharacterized protein LSEI2283 {Lactobacillus casei [TaxId: 1582]}
Probab=6.07 E-value=1.5e+02 Score=17.52 Aligned_cols=26 Identities=8% Similarity=-0.080 Sum_probs=19.1
Q ss_pred ccccchHHHHHHHHHHHHhhhCcCCC
Q 044565 3 LRTFFATIVTTGLTEARAKIFGHVLN 28 (99)
Q Consensus 3 ~~~~~s~~r~~~l~~ls~rIFg~~~n 28 (99)
+..||.+++...|..|++-|=.+..+
T Consensus 7 ~~~~p~P~~r~~l~~Lr~~I~~~~P~ 32 (121)
T d2i8da1 7 YQRIPTPDDLTRVESLFANMQAQFPQ 32 (121)
T ss_dssp HTTSSSHHHHHHHHHHHHHHHHHCTT
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHCCC
Confidence 35678888878888888888765543
No 8
>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=6.03 E-value=83 Score=19.20 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=16.1
Q ss_pred hhhCcCCCCCCC--CchhhHhhc
Q 044565 21 KIFGHVLNLTGQ--RSPHKILRK 41 (99)
Q Consensus 21 rIFg~~~nPt~~--Rsg~kvlr~ 41 (99)
.|||..|-|+-+ ..|.++|+.
T Consensus 159 ~i~gvQFHPE~s~t~~G~~il~n 181 (188)
T d1wl8a1 159 PIYGVQFHPEVAHTEKGEEILRN 181 (188)
T ss_dssp CEEEESSCTTSTTSTTHHHHHHH
T ss_pred CEEEEEcCCccCCCccHHHHHHH
Confidence 589999999954 567787764
No 9
>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}
Probab=5.95 E-value=51 Score=19.89 Aligned_cols=20 Identities=5% Similarity=0.135 Sum_probs=14.3
Q ss_pred hhhCcCCCCC-CCCchhhHhh
Q 044565 21 KIFGHVLNLT-GQRSPHKILR 40 (99)
Q Consensus 21 rIFg~~~nPt-~~Rsg~kvlr 40 (99)
.|||..|-|+ ....|-++|+
T Consensus 169 ni~GvQFHPEkS~~~G~~lL~ 189 (195)
T d1ka9h_ 169 NLLAPQFHPEKSGKAGLAFLA 189 (195)
T ss_dssp SEEEESSCTTSSHHHHHHHHH
T ss_pred CEEEEeCCcccccHhHHHHHH
Confidence 5999999999 3345556654
No 10
>d1toha_ d.178.1.1 (A:) Tyrosine hydroxylase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.85 E-value=2.2e+02 Score=20.47 Aligned_cols=20 Identities=15% Similarity=0.097 Sum_probs=11.8
Q ss_pred ccCCCCcChHHHHHHHHHHH
Q 044565 58 KDDPLVMARQEQERLSKLEI 77 (99)
Q Consensus 58 r~~g~~~De~e~~R~~~~~~ 77 (99)
..+|.|.|+.=-.|-.+++.
T Consensus 28 ~dhpgf~D~~Yr~RR~~~a~ 47 (336)
T d1toha_ 28 LDHPGFSDQVYRQRRKLIAE 47 (336)
T ss_dssp TTSTTTTCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 45567888755555554444
Done!