BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044567
         (288 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A8WT19|CWC22_CAEBR Pre-mRNA-splicing factor CWC22 homolog OS=Caenorhabditis briggsae
           GN=let-858 PE=3 SV=2
          Length = 935

 Score = 33.1 bits (74), Expect = 2.7,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 9/75 (12%)

Query: 39  KPATGGSVSPTESSGEPFTRGGKAKRKYLRENGSVNKRCNNSRKRKASSEDKTESVVTLP 98
           K A   S SPT ++ +P +     K    R   S  K    S KR+ S ED+      +P
Sbjct: 19  KDAREQSDSPTSNTDDPKSPSESPKSN--RSQESSRKDSRESGKRRDSHEDEK-----MP 71

Query: 99  LLPDSPARSSQPGPQ 113
           L P  P RSS+  PQ
Sbjct: 72  LTP--PNRSSEASPQ 84


>sp|Q9UTD6|YID3_SCHPO Uncharacterized mitochondrial carrier C227.03c
           OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
           GN=SPAC227.03c PE=3 SV=1
          Length = 371

 Score = 32.7 bits (73), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 201 EFGRVTWTNEAYNKMVGQEEGEEMVVWLVMKAPVTATLTYPAFTCRVRLQYSYGKEKNSL 260
           +F    +     +   G++    +V+   +     +T+TYP    R RLQ       NS 
Sbjct: 266 QFPLYEYFKSFLDDFFGKKSNFHIVLAATLSKIAASTVTYPHEVLRTRLQSLDAPTHNSA 325

Query: 261 TLPC-DVWRMDGGGFAWR 277
           TL   D+WR +G    WR
Sbjct: 326 TLLIRDIWRSEG----WR 339


>sp|Q9JKU6|STRBP_RAT Spermatid perinuclear RNA-binding protein OS=Rattus norvegicus
           GN=Strbp PE=1 SV=1
          Length = 671

 Score = 32.3 bits (72), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 16/110 (14%)

Query: 139 VFSGGSA--DRTVAMIPQAARVVGSSVTVECVSDTWVDVGGLGRTDGERKANLGRDTCPG 196
           +FSG +A  ++   +IPQA  VV ++V     SD    V G GR    R A +G    PG
Sbjct: 573 LFSGPNAANNKKKKIIPQAKGVVNTAV-----SDAVQAVRGRGRGTLTRGAFVGATAAPG 627

Query: 197 FISDEFGR---VTWTNEAYNKMVGQEEGEEMVVWLVMKAPVTATLTYPAF 243
           +I+  +G     +  + AY         + MV+  VMK P      Y  F
Sbjct: 628 YIAPGYGTPYGYSTASPAYGL------PKRMVLLPVMKFPTYPVPHYSFF 671


>sp|Q65946|DPOL_ADECC DNA polymerase OS=Canine adenovirus serotype 1 (strain CLL) GN=POL
           PE=3 SV=1
          Length = 1149

 Score = 32.0 bits (71), Expect = 5.9,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 9/78 (11%)

Query: 177 GLGRTDGERKANLGRDTCPGFISDEFGRVTWTNEAYNKMVGQEEGEEMVV------WLVM 230
           G+   D +  A    D  P F S + GR+ WTNE    + G+      V+      W V 
Sbjct: 684 GIFTIDADPPAEEFLDVLPPFCSRKGGRLCWTNEP---LRGEVTTSIDVITLHNRGWKVT 740

Query: 231 KAPVTATLTYPAFTCRVR 248
             P T T  +P + C  R
Sbjct: 741 LIPDTRTTVFPEWKCLAR 758


>sp|P87553|DPOL_ADECT DNA polymerase OS=Canine adenovirus serotype 2 (strain Toronto A
           26-61) GN=POL PE=3 SV=1
          Length = 1150

 Score = 31.6 bits (70), Expect = 7.9,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 9/78 (11%)

Query: 177 GLGRTDGERKANLGRDTCPGFISDEFGRVTWTNEAYNKMVGQEEGEEMVV------WLVM 230
           G+   D +  A    D  P F S + GR+ WTNE    + G+      V+      W V 
Sbjct: 685 GIFTIDADPPAEEFLDVLPPFCSRKGGRLCWTNEP---LRGEIATSIDVITLHNRGWKVT 741

Query: 231 KAPVTATLTYPAFTCRVR 248
             P T T  +P + C  R
Sbjct: 742 LIPDTRTTVFPEWKCLAR 759


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.133    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,330,116
Number of Sequences: 539616
Number of extensions: 5065901
Number of successful extensions: 13056
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 13041
Number of HSP's gapped (non-prelim): 50
length of query: 288
length of database: 191,569,459
effective HSP length: 116
effective length of query: 172
effective length of database: 128,974,003
effective search space: 22183528516
effective search space used: 22183528516
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)