Query 044567
Match_columns 288
No_of_seqs 50 out of 52
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 07:31:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044567.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044567hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hi4_A Aerotaxis transducer AE 93.8 0.044 1.5E-06 40.3 3.4 35 183-217 5-39 (121)
2 2gj3_A Nitrogen fixation regul 90.2 0.25 8.7E-06 35.5 3.6 31 189-219 11-41 (120)
3 4eet_B Phototropin-2; LOV, blu 89.9 0.32 1.1E-05 33.0 3.7 29 190-218 4-35 (115)
4 2w0n_A Sensor protein DCUS; si 89.0 0.2 6.9E-06 34.4 2.2 36 182-217 14-49 (118)
5 3a0s_A Sensor protein; PAS-fol 88.5 0.29 1E-05 31.5 2.6 25 195-219 4-28 (96)
6 3fg8_A Uncharacterized protein 88.3 0.42 1.4E-05 34.7 3.7 31 189-219 18-48 (118)
7 3lyx_A Sensory BOX/ggdef domai 87.4 0.71 2.4E-05 30.8 4.1 36 184-219 8-43 (124)
8 3fc7_A HTR-like protein, senso 86.8 0.5 1.7E-05 33.0 3.2 34 186-219 22-55 (125)
9 3luq_A Sensor protein; PAS, hi 86.6 0.72 2.5E-05 31.2 3.8 35 186-220 6-40 (114)
10 3b33_A Sensor protein; structu 85.8 0.45 1.5E-05 33.4 2.5 30 190-219 14-43 (115)
11 2l0w_A Potassium voltage-gated 85.6 0.71 2.4E-05 31.7 3.4 36 183-218 19-57 (138)
12 3t50_A Blue-light-activated hi 84.8 0.98 3.3E-05 31.7 3.9 30 189-218 3-35 (128)
13 2r78_A Sensor protein; sensory 84.4 0.75 2.5E-05 33.3 3.2 30 189-218 17-46 (117)
14 3vol_A Aerotaxis transducer AE 83.8 0.75 2.6E-05 38.9 3.4 36 182-217 21-56 (233)
15 3olo_A Two-component sensor hi 83.1 0.96 3.3E-05 31.0 3.2 30 189-218 19-48 (118)
16 2vv6_A FIXL, sensor protein FI 82.7 0.76 2.6E-05 32.7 2.6 23 196-218 6-28 (119)
17 3k3c_A Protein RV1364C/MT1410; 82.6 0.99 3.4E-05 33.4 3.3 37 183-219 17-54 (158)
18 1n9l_A PHOT-LOV1, putative blu 82.3 0.8 2.8E-05 32.8 2.6 23 196-218 6-31 (109)
19 2pr5_A Blue-light photorecepto 81.9 1.2 4.1E-05 32.4 3.5 28 191-218 7-37 (132)
20 3bwl_A Sensor protein; structu 81.9 1.1 3.8E-05 31.7 3.2 31 189-219 23-53 (126)
21 1byw_A Protein (human ERG pota 80.8 1.1 3.8E-05 29.2 2.7 23 196-218 4-29 (110)
22 1d06_A Nitrogen fixation regul 80.7 1.2 4.1E-05 32.3 3.1 29 190-218 23-51 (130)
23 2z6d_A Phototropin-2; PAS-fold 79.7 0.94 3.2E-05 30.3 2.1 33 186-218 9-44 (130)
24 3mjq_A Uncharacterized protein 79.6 1.2 4.2E-05 30.8 2.7 29 191-219 7-35 (126)
25 4hia_A LOV protein; PAS, HTH, 79.4 1.2 4.3E-05 33.6 2.9 32 187-218 11-45 (176)
26 3kx0_X Uncharacterized protein 78.1 1.2 4.3E-05 34.8 2.7 37 183-219 37-74 (185)
27 3mfx_A Sensory BOX/ggdef famil 77.6 2.2 7.6E-05 32.8 3.9 36 184-219 8-43 (129)
28 3eeh_A Putative light and redo 77.1 2.2 7.5E-05 28.6 3.3 37 183-219 11-48 (125)
29 1ll8_A PAS kinase; PAS domain, 76.2 1.2 4E-05 31.5 1.8 25 195-219 10-35 (114)
30 3ewk_A Sensor protein; PAS dom 75.3 2.4 8.1E-05 34.4 3.7 33 187-219 115-147 (227)
31 2v0u_A NPH1-1, LOV2; kinase, t 75.1 3 0.0001 28.7 3.7 30 189-218 8-40 (146)
32 3p7n_A Sensor histidine kinase 74.1 2.7 9.2E-05 34.6 3.7 41 178-218 58-101 (258)
33 3ue6_A Aureochrome1; PAS/LOV d 73.9 2.2 7.7E-05 31.3 2.9 36 183-218 35-73 (166)
34 3sw1_A Sensory box protein; li 73.5 2.1 7.2E-05 31.4 2.7 36 183-218 25-63 (162)
35 2kdk_A ARYL hydrocarbon recept 72.6 2.4 8.1E-05 29.7 2.7 24 196-219 16-39 (121)
36 3f1p_A Endothelial PAS domain- 72.6 2.4 8.3E-05 29.7 2.7 23 196-218 12-34 (117)
37 3d72_A Vivid PAS protein VVD; 72.3 3.2 0.00011 30.2 3.4 25 194-218 36-63 (149)
38 3mxq_A Sensor protein; PSI2, M 71.6 1.6 5.4E-05 35.4 1.7 31 189-219 28-58 (152)
39 3ewk_A Sensor protein; PAS dom 71.6 2.3 7.7E-05 34.6 2.7 23 196-218 2-24 (227)
40 1v9y_A Heme PAS sensor protein 69.9 4 0.00014 29.5 3.5 35 185-219 42-76 (167)
41 2jhe_A Transcription regulator 67.8 4.4 0.00015 31.6 3.5 34 186-219 83-116 (190)
42 3mqq_A Transcriptional regulat 67.2 2.9 0.0001 29.5 2.2 22 197-219 17-38 (120)
43 3f1p_B ARYL hydrocarbon recept 65.4 3.6 0.00012 29.1 2.4 23 196-218 15-37 (121)
44 2qkp_A Uncharacterized protein 61.3 2.3 7.9E-05 34.1 0.8 37 182-218 18-57 (151)
45 3nja_A Probable ggdef family p 56.2 9.7 0.00033 25.8 3.2 34 187-220 11-44 (125)
46 2vlg_A Sporulation kinase A; h 55.6 6.5 0.00022 29.6 2.4 24 195-218 11-34 (111)
47 4eho_A Bacteriophytochrome, PA 52.7 5.7 0.00019 39.2 2.1 33 188-220 523-555 (635)
48 2wkq_A NPH1-1, RAS-related C3 50.9 11 0.00038 32.1 3.4 25 194-218 22-49 (332)
49 3a0r_A Sensor protein; four he 44.8 7 0.00024 33.3 1.1 30 190-219 15-44 (349)
50 3h9w_A Diguanylate cyclase wit 43.6 13 0.00044 25.9 2.2 24 197-220 7-31 (115)
51 3icy_A Sensor protein; sensory 41.5 13 0.00046 25.1 2.0 35 185-219 6-40 (118)
52 2ykf_A Pdtas, probable sensor 33.9 13 0.00043 33.4 0.0 21 197-217 184-204 (305)
53 3ksp_A Calcium/calmodulin-depe 22.5 1.6E+02 0.0056 23.4 5.7 34 243-278 84-118 (129)
No 1
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=93.82 E-value=0.044 Score=40.31 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=30.9
Q ss_pred HHHhhhcCCCCCCeEeeCCCCcEEEehHHHHHhhC
Q 044567 183 GERKANLGRDTCPGFISDEFGRVTWTNEAYNKMVG 217 (288)
Q Consensus 183 eEv~~~LE~Dt~P~fISDg~nRV~wvN~AYkrMVg 217 (288)
...+.-|+.=.-+-+|.|..|||.|+|.|+.+|.|
T Consensus 5 ~rl~~il~~~~~gviv~D~~g~I~~~N~a~~~llg 39 (121)
T 4hi4_A 5 ARIASALDNVSANVMIADNDLNIIYMNRTVSEMLG 39 (121)
T ss_dssp HHHHHHHTTSSSEEEEEETTCBEEEECHHHHHHHH
T ss_pred HHHHHHHhcCCccEEEEcCCCeEEEecHHHHHHHH
Confidence 45666778878899999999999999999999986
No 2
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=90.16 E-value=0.25 Score=35.47 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=25.5
Q ss_pred cCCCCCCeEeeCCCCcEEEehHHHHHhhCCC
Q 044567 189 LGRDTCPGFISDEFGRVTWTNEAYNKMVGQE 219 (288)
Q Consensus 189 LE~Dt~P~fISDg~nRV~wvN~AYkrMVgq~ 219 (288)
+|.-.-.-+|+|..|++.++|.||.+|.|-.
T Consensus 11 ~~~~~~~i~~~d~~g~i~~~N~a~~~~~G~~ 41 (120)
T 2gj3_A 11 VEHAPIAISITDLKANILYANRAFRTITGYG 41 (120)
T ss_dssp HHHCSSEEEEECTTCBEEEECHHHHHHHCCC
T ss_pred HHhCCCeEEEECCCCCEEeehHHHHHHHCcC
Confidence 4444446789999999999999999999963
No 3
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=89.87 E-value=0.32 Score=32.96 Aligned_cols=29 Identities=7% Similarity=0.030 Sum_probs=24.3
Q ss_pred CCCCCCeEeeCC---CCcEEEehHHHHHhhCC
Q 044567 190 GRDTCPGFISDE---FGRVTWTNEAYNKMVGQ 218 (288)
Q Consensus 190 E~Dt~P~fISDg---~nRV~wvN~AYkrMVgq 218 (288)
|.-..+-+|.|. .|+|.++|.||.+|.|-
T Consensus 4 ~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~ 35 (115)
T 4eet_B 4 EFIEKNFVITDPRLPDNPIIFASDGFLELTEY 35 (115)
T ss_dssp -CCCCSEEEECTTSTTCCEEEECHHHHHHHCC
T ss_pred ccCCCcEEEEcCCCCCCcEEEEcHHHHHHHCc
Confidence 444456789999 99999999999999985
No 4
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=88.96 E-value=0.2 Score=34.42 Aligned_cols=36 Identities=25% Similarity=0.203 Sum_probs=30.0
Q ss_pred hHHHhhhcCCCCCCeEeeCCCCcEEEehHHHHHhhC
Q 044567 182 DGERKANLGRDTCPGFISDEFGRVTWTNEAYNKMVG 217 (288)
Q Consensus 182 deEv~~~LE~Dt~P~fISDg~nRV~wvN~AYkrMVg 217 (288)
.++.+.-|+.-.-+-++.|..|+|.++|.|+.+|.|
T Consensus 14 ~~~~~~il~~~~~~i~~~d~~g~i~~~N~~~~~~~g 49 (118)
T 2w0n_A 14 FEQRQAMLQSIKEGVVAVDDRGEVTLINDAAQELLN 49 (118)
T ss_dssp HHHHHHHHHCCCCCCEEEBTTTBCCCBCHHHHHHHC
T ss_pred HHHHHHHHhhccccEEEECCCCcEeehhHHHHHHhC
Confidence 344555566667788999999999999999999999
No 5
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=88.53 E-value=0.29 Score=31.48 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=22.0
Q ss_pred CeEeeCCCCcEEEehHHHHHhhCCC
Q 044567 195 PGFISDEFGRVTWTNEAYNKMVGQE 219 (288)
Q Consensus 195 P~fISDg~nRV~wvN~AYkrMVgq~ 219 (288)
+-++.|..|+|.++|.|+.+|.|-+
T Consensus 4 ~i~~~d~~g~i~~~N~~~~~l~g~~ 28 (96)
T 3a0s_A 4 AIITLSKDGRITEWNKKAEQLFGLK 28 (96)
T ss_dssp EEEEEETTSBEEEECHHHHHHHCCC
T ss_pred eEEEEcCCCCEeehhHHHHHHhCCC
Confidence 4578999999999999999999863
No 6
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=88.31 E-value=0.42 Score=34.67 Aligned_cols=31 Identities=16% Similarity=0.034 Sum_probs=26.0
Q ss_pred cCCCCCCeEeeCCCCcEEEehHHHHHhhCCC
Q 044567 189 LGRDTCPGFISDEFGRVTWTNEAYNKMVGQE 219 (288)
Q Consensus 189 LE~Dt~P~fISDg~nRV~wvN~AYkrMVgq~ 219 (288)
|+.-.-+-||.|..|||.++|.||.+|.|-+
T Consensus 18 l~~~~~~i~~~D~~g~i~~~N~a~~~l~g~~ 48 (118)
T 3fg8_A 18 YFQGGLGFMALDEDLRIIYVNSGCLRHVRRS 48 (118)
T ss_dssp SSCTTCEEEEECTTCBEEEECHHHHHHHTCC
T ss_pred HhhCCceEEEECCCCeEEEECHHHHHHhCCC
Confidence 4444567799999999999999999999863
No 7
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=87.43 E-value=0.71 Score=30.84 Aligned_cols=36 Identities=14% Similarity=0.055 Sum_probs=29.6
Q ss_pred HHhhhcCCCCCCeEeeCCCCcEEEehHHHHHhhCCC
Q 044567 184 ERKANLGRDTCPGFISDEFGRVTWTNEAYNKMVGQE 219 (288)
Q Consensus 184 Ev~~~LE~Dt~P~fISDg~nRV~wvN~AYkrMVgq~ 219 (288)
..+.-++.-..+-++.|..|+|.++|.|+.++.|.+
T Consensus 8 ~~~~~~~~~~~~i~~~d~~~~i~~~N~~~~~~~g~~ 43 (124)
T 3lyx_A 8 QRAKAFDYVFDAIVVTDLQGFIIDWNKGSETLYGYS 43 (124)
T ss_dssp HHHHGGGTCSSEEEEEETTCBEEEECHHHHHHHCCC
T ss_pred HHHHHHhhcCceEEEECCCCcEeehhhHHHHHhCCC
Confidence 445556666778899999999999999999999863
No 8
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=86.84 E-value=0.5 Score=33.00 Aligned_cols=34 Identities=9% Similarity=0.022 Sum_probs=25.4
Q ss_pred hhhcCCCCCCeEeeCCCCcEEEehHHHHHhhCCC
Q 044567 186 KANLGRDTCPGFISDEFGRVTWTNEAYNKMVGQE 219 (288)
Q Consensus 186 ~~~LE~Dt~P~fISDg~nRV~wvN~AYkrMVgq~ 219 (288)
+.-++.-.-+-++.|..|+|.++|.|+.+|.|-+
T Consensus 22 ~~i~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~ 55 (125)
T 3fc7_A 22 ESLVSDSPDGIVHLTTNGTILSVNPSMAGRLGAD 55 (125)
T ss_dssp ----CCSCCEEEEEETTSBEEEECHHHHHHHTSC
T ss_pred HHHHhcCCCeEEEEcCCCeEEEECHHHHHHhCCC
Confidence 3344455556788999999999999999999863
No 9
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=86.65 E-value=0.72 Score=31.23 Aligned_cols=35 Identities=9% Similarity=-0.035 Sum_probs=27.8
Q ss_pred hhhcCCCCCCeEeeCCCCcEEEehHHHHHhhCCCC
Q 044567 186 KANLGRDTCPGFISDEFGRVTWTNEAYNKMVGQEE 220 (288)
Q Consensus 186 ~~~LE~Dt~P~fISDg~nRV~wvN~AYkrMVgq~e 220 (288)
+.-++.-..+.++.|..|++.++|.||.+|.|-+.
T Consensus 6 ~~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~ 40 (114)
T 3luq_A 6 RLFTEHAPAALAMFDREMRYLAVSRRWREDYGLGD 40 (114)
T ss_dssp HHHHHTCSSEEEEEETTCBEEEECHHHHHHTTCCS
T ss_pred HHHHhcCCceEEEEcCCcEEEEECHHHHHHHCCCH
Confidence 33445555677889999999999999999998643
No 10
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=85.78 E-value=0.45 Score=33.38 Aligned_cols=30 Identities=17% Similarity=0.153 Sum_probs=24.9
Q ss_pred CCCCCCeEeeCCCCcEEEehHHHHHhhCCC
Q 044567 190 GRDTCPGFISDEFGRVTWTNEAYNKMVGQE 219 (288)
Q Consensus 190 E~Dt~P~fISDg~nRV~wvN~AYkrMVgq~ 219 (288)
+.-.-+-++.|..|+|.++|.|+.+|.|.+
T Consensus 14 ~~~~~~i~~~D~~g~I~~~N~aa~~l~g~~ 43 (115)
T 3b33_A 14 NNMVTATLILDDGLAIRYANPAAELLFSQS 43 (115)
T ss_dssp HHCSSEEEEECTTCBEEEECHHHHHHTTSC
T ss_pred hhcCceEEEECCCCcEEEECHHHHHHhCCC
Confidence 333446789999999999999999999864
No 11
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=85.64 E-value=0.71 Score=31.74 Aligned_cols=36 Identities=11% Similarity=0.173 Sum_probs=30.3
Q ss_pred HHHhhhcCCCCCCeEeeCC---CCcEEEehHHHHHhhCC
Q 044567 183 GERKANLGRDTCPGFISDE---FGRVTWTNEAYNKMVGQ 218 (288)
Q Consensus 183 eEv~~~LE~Dt~P~fISDg---~nRV~wvN~AYkrMVgq 218 (288)
+.+...++.-.-+.++.|. .|+|.++|.|+.+|.|-
T Consensus 19 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~ 57 (138)
T 2l0w_A 19 DTIIRKFEGQSRKFIIANARVENCAVIYCNDGFCELCGY 57 (138)
T ss_dssp HHHHHHHTTTTSEEEEEESSSTTCBEEEECSHHHHHHSC
T ss_pred HHHHHHHhcCCCCEEEEecCCCCCEEEEeCHHHHHHhCC
Confidence 4566667777778899999 99999999999999885
No 12
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=84.82 E-value=0.98 Score=31.72 Aligned_cols=30 Identities=20% Similarity=0.290 Sum_probs=25.1
Q ss_pred cCCCCCCeEeeCC---CCcEEEehHHHHHhhCC
Q 044567 189 LGRDTCPGFISDE---FGRVTWTNEAYNKMVGQ 218 (288)
Q Consensus 189 LE~Dt~P~fISDg---~nRV~wvN~AYkrMVgq 218 (288)
|+.-..+.+|.|. .|+|.++|.||.+|.|-
T Consensus 3 ~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~ 35 (128)
T 3t50_A 3 SEFTLMPMLITNPHLPDNPIVFANPAFLKLTGY 35 (128)
T ss_dssp CCCCSSCEEEECTTSTTCCEEEECHHHHHHHCC
T ss_pred cccCcccEEEecCCCCCCcEEEEcHHHHHHhCc
Confidence 3444567899999 89999999999999985
No 13
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=84.35 E-value=0.75 Score=33.27 Aligned_cols=30 Identities=23% Similarity=0.138 Sum_probs=24.7
Q ss_pred cCCCCCCeEeeCCCCcEEEehHHHHHhhCC
Q 044567 189 LGRDTCPGFISDEFGRVTWTNEAYNKMVGQ 218 (288)
Q Consensus 189 LE~Dt~P~fISDg~nRV~wvN~AYkrMVgq 218 (288)
+|.-.-.-||.|..|++.++|.|+.+|.|-
T Consensus 17 ~e~~~d~i~~~d~~g~i~~vN~a~~~l~Gy 46 (117)
T 2r78_A 17 FEHAIDGIFIMDAEGHYLDVNPAICSAIGY 46 (117)
T ss_dssp HHHCSSEEEEECTTSBEEEECHHHHHHHCC
T ss_pred HhcCCceEEEECCCCCEEEecHHHHHHHCc
Confidence 444444568899999999999999999985
No 14
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=83.79 E-value=0.75 Score=38.91 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=31.0
Q ss_pred hHHHhhhcCCCCCCeEeeCCCCcEEEehHHHHHhhC
Q 044567 182 DGERKANLGRDTCPGFISDEFGRVTWTNEAYNKMVG 217 (288)
Q Consensus 182 deEv~~~LE~Dt~P~fISDg~nRV~wvN~AYkrMVg 217 (288)
-+..+.-|+.-..+-+|.|..|+|.++|.||.+|.+
T Consensus 21 ~~~l~~iLd~~~~~vii~D~~g~I~~~N~a~~~ll~ 56 (233)
T 3vol_A 21 MARIKSALDNVSANVMIADNDLNIIYMNRTVSEMLG 56 (233)
T ss_dssp HHHHHHHHTTSSSEEEEEETTSBEEEECHHHHHHHH
T ss_pred HHHHHHHHhcCCCcEEEECCCCcEEEecHHHHHHHH
Confidence 345566688878899999999999999999999984
No 15
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=83.06 E-value=0.96 Score=31.03 Aligned_cols=30 Identities=13% Similarity=0.163 Sum_probs=24.9
Q ss_pred cCCCCCCeEeeCCCCcEEEehHHHHHhhCC
Q 044567 189 LGRDTCPGFISDEFGRVTWTNEAYNKMVGQ 218 (288)
Q Consensus 189 LE~Dt~P~fISDg~nRV~wvN~AYkrMVgq 218 (288)
++.-.-+-|+.|..|++..+|.|+.+|.|-
T Consensus 19 ~~~~~~~i~~~d~~g~i~~~N~~~~~l~G~ 48 (118)
T 3olo_A 19 INNAVEASFCLGDNWQFLYVNDATCRMTEY 48 (118)
T ss_dssp HHHCSSEEEEECTTSBEEEECHHHHHHHCC
T ss_pred HhcCCceEEEECCCCcEEEEHHHHHHHHCC
Confidence 344444678899999999999999999986
No 16
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=82.71 E-value=0.76 Score=32.73 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=21.0
Q ss_pred eEeeCCCCcEEEehHHHHHhhCC
Q 044567 196 GFISDEFGRVTWTNEAYNKMVGQ 218 (288)
Q Consensus 196 ~fISDg~nRV~wvN~AYkrMVgq 218 (288)
-++.|..|+|..+|.|+.+|.|-
T Consensus 6 i~~~d~~g~i~~~N~a~~~l~G~ 28 (119)
T 2vv6_A 6 MIVIDGHGIIQLFSTAAERLFGW 28 (119)
T ss_dssp EEEEETTSBEEEECHHHHHHHCC
T ss_pred EEEECCCCeEEEEhHHHHHHhCC
Confidence 47899999999999999999985
No 17
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=82.59 E-value=0.99 Score=33.43 Aligned_cols=37 Identities=11% Similarity=-0.091 Sum_probs=29.5
Q ss_pred HHHhhhcCCCCCCeEeeC-CCCcEEEehHHHHHhhCCC
Q 044567 183 GERKANLGRDTCPGFISD-EFGRVTWTNEAYNKMVGQE 219 (288)
Q Consensus 183 eEv~~~LE~Dt~P~fISD-g~nRV~wvN~AYkrMVgq~ 219 (288)
+..+.-++.-..+.+|.| ..|++.++|.||.+|.|.+
T Consensus 17 ~~~~~~~~~~~~~i~~~d~~~~~i~~~N~~~~~~~g~~ 54 (158)
T 3k3c_A 17 EDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLL 54 (158)
T ss_dssp HHHHHHHHHCSSEEEEEETTTTEEEEECHHHHHHCTTC
T ss_pred HHHHHHHhcCCceEEEEECCCcEeHHHHHHHHHHcCCc
Confidence 334445555667788898 9999999999999999875
No 18
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=82.25 E-value=0.8 Score=32.78 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=19.8
Q ss_pred eEeeCC---CCcEEEehHHHHHhhCC
Q 044567 196 GFISDE---FGRVTWTNEAYNKMVGQ 218 (288)
Q Consensus 196 ~fISDg---~nRV~wvN~AYkrMVgq 218 (288)
-+|+|. .|++.++|.||.+|.|-
T Consensus 6 i~i~d~~~~~g~i~~~N~a~~~l~Gy 31 (109)
T 1n9l_A 6 FVVADATLPDCPLVYASEGFYAMTGY 31 (109)
T ss_dssp EEEEETTSTTCCEEEECHHHHHHHCC
T ss_pred EEEEcCCCCCCeEEEEchHHHHHHCc
Confidence 478884 69999999999999884
No 19
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=81.93 E-value=1.2 Score=32.38 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=22.5
Q ss_pred CCCCCeEeeCCCC---cEEEehHHHHHhhCC
Q 044567 191 RDTCPGFISDEFG---RVTWTNEAYNKMVGQ 218 (288)
Q Consensus 191 ~Dt~P~fISDg~n---RV~wvN~AYkrMVgq 218 (288)
.-.-.-+|.|..| ++.++|.||.+|.|-
T Consensus 7 ~~~~~i~~~d~~g~~~~i~~~N~a~~~~~G~ 37 (132)
T 2pr5_A 7 HVRVGVVITDPALEDNPIVYVNQGFVQMTGY 37 (132)
T ss_dssp CCCCEEEEECTTSTTCCEEEECHHHHHHHSC
T ss_pred cCCCcEEEEeCCCCCCcEEEECHHHHHHhCc
Confidence 3334567889866 999999999999985
No 20
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=81.91 E-value=1.1 Score=31.71 Aligned_cols=31 Identities=13% Similarity=0.095 Sum_probs=24.8
Q ss_pred cCCCCCCeEeeCCCCcEEEehHHHHHhhCCC
Q 044567 189 LGRDTCPGFISDEFGRVTWTNEAYNKMVGQE 219 (288)
Q Consensus 189 LE~Dt~P~fISDg~nRV~wvN~AYkrMVgq~ 219 (288)
+|.-.-.-++.|..|++.++|.|+.+|.|-.
T Consensus 23 ~e~~~~~i~~~d~~g~i~~~N~a~~~~~G~~ 53 (126)
T 3bwl_A 23 FENSPDMIDVLDADGTICEVNQRFCAELGYD 53 (126)
T ss_dssp HHHCSSEEEEECTTCBEEEECHHHHHHHTCC
T ss_pred HhhCCcEEEEEcCCCCEEEEcHHHHHHhCCC
Confidence 3333445688999999999999999999963
No 21
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=80.79 E-value=1.1 Score=29.18 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=19.6
Q ss_pred eEeeCC---CCcEEEehHHHHHhhCC
Q 044567 196 GFISDE---FGRVTWTNEAYNKMVGQ 218 (288)
Q Consensus 196 ~fISDg---~nRV~wvN~AYkrMVgq 218 (288)
-+|.|. .|+|.++|.|+.+|.|-
T Consensus 4 i~i~d~~~~~g~i~~~N~~~~~~~g~ 29 (110)
T 1byw_A 4 FIIANARVENCAVIYCNDGFCELCGY 29 (110)
T ss_dssp EEEEETTSSSCBEEEECHHHHHHHTC
T ss_pred EEEEeccCCCCcEEEECHHHHHHhCC
Confidence 467786 49999999999999985
No 22
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=80.73 E-value=1.2 Score=32.32 Aligned_cols=29 Identities=17% Similarity=0.072 Sum_probs=23.7
Q ss_pred CCCCCCeEeeCCCCcEEEehHHHHHhhCC
Q 044567 190 GRDTCPGFISDEFGRVTWTNEAYNKMVGQ 218 (288)
Q Consensus 190 E~Dt~P~fISDg~nRV~wvN~AYkrMVgq 218 (288)
+.-.-.-++.|..|+|.++|.|+.+|.|-
T Consensus 23 ~~~~d~i~~~d~~g~i~~~N~a~~~l~Gy 51 (130)
T 1d06_A 23 DTVPDATVVSATDGTIVSFNAAAVRQFGY 51 (130)
T ss_dssp TTCSSEEEEEETTSBEEEECHHHHHHHCC
T ss_pred hhCcCeEEEECCCCeEEEEcHHHHHHHCC
Confidence 33333457899999999999999999985
No 23
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=79.70 E-value=0.94 Score=30.35 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=26.2
Q ss_pred hhhcCCCCCCeEeeC---CCCcEEEehHHHHHhhCC
Q 044567 186 KANLGRDTCPGFISD---EFGRVTWTNEAYNKMVGQ 218 (288)
Q Consensus 186 ~~~LE~Dt~P~fISD---g~nRV~wvN~AYkrMVgq 218 (288)
+.-++.-..+-++.| ..|++.++|.|+.+|.|-
T Consensus 9 ~~~~~~~~~~i~~~d~~d~~~~i~~~N~~~~~~~g~ 44 (130)
T 2z6d_A 9 KTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGY 44 (130)
T ss_dssp HHHHHHTTCEEEEEETTSTTCCEEEECHHHHHHHCC
T ss_pred HHHHHhcccceeeeeccCCCCcEEEecHHHHHHhCc
Confidence 334444556778889 899999999999999985
No 24
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=79.62 E-value=1.2 Score=30.75 Aligned_cols=29 Identities=24% Similarity=0.205 Sum_probs=24.1
Q ss_pred CCCCCeEeeCCCCcEEEehHHHHHhhCCC
Q 044567 191 RDTCPGFISDEFGRVTWTNEAYNKMVGQE 219 (288)
Q Consensus 191 ~Dt~P~fISDg~nRV~wvN~AYkrMVgq~ 219 (288)
.-.-+.++.|..|+|.++|.|+.+|.|-+
T Consensus 7 ~~~~~i~~~d~~g~i~~~N~~~~~~~g~~ 35 (126)
T 3mjq_A 7 TIEDMILIINREGRLLYANTAVPKKLGYT 35 (126)
T ss_dssp GCSSEEEEEETTSBEEEECTHHHHHHSCC
T ss_pred hCCceEEEEeCCCcEEEEcHHHHHHHCCC
Confidence 33446788999999999999999999863
No 25
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=79.43 E-value=1.2 Score=33.62 Aligned_cols=32 Identities=22% Similarity=0.218 Sum_probs=26.6
Q ss_pred hhcCCCCCCeEeeCCC---CcEEEehHHHHHhhCC
Q 044567 187 ANLGRDTCPGFISDEF---GRVTWTNEAYNKMVGQ 218 (288)
Q Consensus 187 ~~LE~Dt~P~fISDg~---nRV~wvN~AYkrMVgq 218 (288)
.-++.-..+-+|.|.. |+|.++|.||.+|.|-
T Consensus 11 ~~~~~~~~~i~~~d~~~~~g~i~~~N~a~~~~~G~ 45 (176)
T 4hia_A 11 AVFDRSGVALTLVDMSLPEQPVVLANPPFLRMTGY 45 (176)
T ss_dssp HHHHHCSSCCEEEETTSTTCCEEEECHHHHHHHTC
T ss_pred HHHhcCCCcEEEEecCCCCCcEEEECHHHHHHHCc
Confidence 3445555678999999 9999999999999985
No 26
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=78.14 E-value=1.2 Score=34.83 Aligned_cols=37 Identities=11% Similarity=-0.091 Sum_probs=30.1
Q ss_pred HHHhhhcCCCCCCeEeeC-CCCcEEEehHHHHHhhCCC
Q 044567 183 GERKANLGRDTCPGFISD-EFGRVTWTNEAYNKMVGQE 219 (288)
Q Consensus 183 eEv~~~LE~Dt~P~fISD-g~nRV~wvN~AYkrMVgq~ 219 (288)
+..+.-++.-..+.+|.| ..|++.++|.||.+|.|.+
T Consensus 37 ~~l~~l~~~~~~~i~~~d~~~g~i~~~N~a~~~l~G~~ 74 (185)
T 3kx0_X 37 EDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLL 74 (185)
T ss_dssp HHHHHHHHHCSSEEEEEETTTTEEEEECHHHHHHCCCC
T ss_pred HHHHHHHhcCCceEEEEECCCcEEEEEcHHHHHHcCCc
Confidence 444555666667888999 9999999999999999865
No 27
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=77.63 E-value=2.2 Score=32.84 Aligned_cols=36 Identities=8% Similarity=-0.005 Sum_probs=28.7
Q ss_pred HHhhhcCCCCCCeEeeCCCCcEEEehHHHHHhhCCC
Q 044567 184 ERKANLGRDTCPGFISDEFGRVTWTNEAYNKMVGQE 219 (288)
Q Consensus 184 Ev~~~LE~Dt~P~fISDg~nRV~wvN~AYkrMVgq~ 219 (288)
....-|+.-.-+-+|.|..|+|..+|.|+.+|.|-+
T Consensus 8 ~l~~i~~~~~d~i~~~D~~g~I~~~N~aa~~l~G~~ 43 (129)
T 3mfx_A 8 TIELFIQHLTEAMILVNANGFIRSCNQRSAELLDCP 43 (129)
T ss_dssp HHHHHHTTCSSEEEEEETTSBEEEECHHHHHHTTSC
T ss_pred HHHHHHhcCCceEEEECCCCEEEeEhHHHHHHHCcC
Confidence 344455665567899999999999999999999863
No 28
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=77.07 E-value=2.2 Score=28.65 Aligned_cols=37 Identities=14% Similarity=0.019 Sum_probs=29.8
Q ss_pred HHHhhhcCCCCCCeEeeCCC-CcEEEehHHHHHhhCCC
Q 044567 183 GERKANLGRDTCPGFISDEF-GRVTWTNEAYNKMVGQE 219 (288)
Q Consensus 183 eEv~~~LE~Dt~P~fISDg~-nRV~wvN~AYkrMVgq~ 219 (288)
+..+.-++.-....++.|.. |++.++|.+|.+|.|-+
T Consensus 11 ~~~~~~~~~~~~~i~~~d~~~~~i~~~n~~~~~~~g~~ 48 (125)
T 3eeh_A 11 RRVRELTEATNDILWEFTADLSEVLVINSAYEDIWGRS 48 (125)
T ss_dssp HHHHHHHSCCCCEEEEEETTSSCEEEECTHHHHHHSSC
T ss_pred HHHHHHHhcCCceEEEEEcCCCcEEEecHHHHHHHCCC
Confidence 44455566666777889999 99999999999999863
No 29
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=76.17 E-value=1.2 Score=31.47 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=22.1
Q ss_pred CeEeeCCC-CcEEEehHHHHHhhCCC
Q 044567 195 PGFISDEF-GRVTWTNEAYNKMVGQE 219 (288)
Q Consensus 195 P~fISDg~-nRV~wvN~AYkrMVgq~ 219 (288)
.-|+.|.. |+|.++|.|+.+|.|-.
T Consensus 10 ~i~~~d~~~g~I~~~N~aa~~l~G~~ 35 (114)
T 1ll8_A 10 AIFTVDAKTTEILVANDKACGLLGYS 35 (114)
T ss_dssp EEEEEETTTCBEEEECTTHHHHHTCC
T ss_pred eEEEEECCCCeEEEehHHHHHHhCCC
Confidence 46789998 99999999999999853
No 30
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=75.27 E-value=2.4 Score=34.44 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=26.3
Q ss_pred hhcCCCCCCeEeeCCCCcEEEehHHHHHhhCCC
Q 044567 187 ANLGRDTCPGFISDEFGRVTWTNEAYNKMVGQE 219 (288)
Q Consensus 187 ~~LE~Dt~P~fISDg~nRV~wvN~AYkrMVgq~ 219 (288)
..++.-.-..+|.|..|++.++|.||.+|.|-+
T Consensus 115 ~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~G~~ 147 (227)
T 3ewk_A 115 QAMDANSEMILLTDRAGRIIYANPALCRFSGMA 147 (227)
T ss_dssp HHHHTCCSEEEEECTTSCEEEECHHHHHHHTCC
T ss_pred HHHhcCcCeEEEEcCCCcEEEEchHHHHHhCCC
Confidence 344544445789999999999999999999864
No 31
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=75.15 E-value=3 Score=28.65 Aligned_cols=30 Identities=13% Similarity=0.171 Sum_probs=24.9
Q ss_pred cCCCCCCeEeeCC---CCcEEEehHHHHHhhCC
Q 044567 189 LGRDTCPGFISDE---FGRVTWTNEAYNKMVGQ 218 (288)
Q Consensus 189 LE~Dt~P~fISDg---~nRV~wvN~AYkrMVgq 218 (288)
++.-..+-+|.|. .++|.++|.+|.++.|-
T Consensus 8 ~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~ 40 (146)
T 2v0u_A 8 LERIEKNFVITDPRLPDNPIIFASDSFLQLTEY 40 (146)
T ss_dssp GGGSSSCEEEECTTSTTCCEEEECHHHHHHHCC
T ss_pred HhcCCCcEEEEcCCCCCceEEEEcHHHHHHHCc
Confidence 3344456789999 99999999999999985
No 32
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=74.06 E-value=2.7 Score=34.60 Aligned_cols=41 Identities=12% Similarity=0.099 Sum_probs=31.5
Q ss_pred CCCChHHHhhhcCCCCCCeEeeCC---CCcEEEehHHHHHhhCC
Q 044567 178 LGRTDGERKANLGRDTCPGFISDE---FGRVTWTNEAYNKMVGQ 218 (288)
Q Consensus 178 lg~tdeEv~~~LE~Dt~P~fISDg---~nRV~wvN~AYkrMVgq 218 (288)
+-...+..+.-++.-..+.||.|. .|||.++|.||.+|.|-
T Consensus 58 l~~~~~~~~~i~~~~~~~i~~~d~~~~~g~i~~~N~a~~~l~G~ 101 (258)
T 3p7n_A 58 VQPPAQWVLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGY 101 (258)
T ss_dssp ---CCHHHHHHHHTCSSEEEEECTTSTTCCEEEECHHHHHHHCC
T ss_pred HHhHHHHHHHHHhcCCccEEEEcCCCCCCcEEEEhHHHHHHcCC
Confidence 334444556667777778999999 99999999999999986
No 33
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=73.87 E-value=2.2 Score=31.25 Aligned_cols=36 Identities=11% Similarity=0.085 Sum_probs=28.9
Q ss_pred HHHhhhcCCCCCCeEeeCC---CCcEEEehHHHHHhhCC
Q 044567 183 GERKANLGRDTCPGFISDE---FGRVTWTNEAYNKMVGQ 218 (288)
Q Consensus 183 eEv~~~LE~Dt~P~fISDg---~nRV~wvN~AYkrMVgq 218 (288)
+....-++.-..+.+|.|. .|+|.++|.||.+|.|-
T Consensus 35 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~ 73 (166)
T 3ue6_A 35 YSLVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGY 73 (166)
T ss_dssp CHHHHHHHHTTSCEEEEETTSTTCCEEEECHHHHHHHCC
T ss_pred HHHHHHHhcCCceEEEEEccCCCCcEEEECHHHHHHhCc
Confidence 4444555555668899999 79999999999999985
No 34
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=73.49 E-value=2.1 Score=31.38 Aligned_cols=36 Identities=11% Similarity=0.178 Sum_probs=29.3
Q ss_pred HHHhhhcCCCCCCeEeeCCCC---cEEEehHHHHHhhCC
Q 044567 183 GERKANLGRDTCPGFISDEFG---RVTWTNEAYNKMVGQ 218 (288)
Q Consensus 183 eEv~~~LE~Dt~P~fISDg~n---RV~wvN~AYkrMVgq 218 (288)
+..+.-++.-..+.+|.|..| +|.++|.||.+|.|-
T Consensus 25 ~~~~~i~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~ 63 (162)
T 3sw1_A 25 QLLQSMVDASNDGIVVAEKEGDDTILIYVNAAFEYLTGY 63 (162)
T ss_dssp HHHHHHHHTCSSEEEEEEEETTEEEEEEECHHHHHHHTC
T ss_pred HHHHHHHhhccCcEEEEeCCCCccEEEEECHHHHHHHCC
Confidence 344455566667789999999 999999999999985
No 35
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=72.63 E-value=2.4 Score=29.72 Aligned_cols=24 Identities=8% Similarity=0.056 Sum_probs=20.9
Q ss_pred eEeeCCCCcEEEehHHHHHhhCCC
Q 044567 196 GFISDEFGRVTWTNEAYNKMVGQE 219 (288)
Q Consensus 196 ~fISDg~nRV~wvN~AYkrMVgq~ 219 (288)
-++.|..|++.++|.|+.+|.|-.
T Consensus 16 i~~~d~~g~i~~~N~~~~~~~G~~ 39 (121)
T 2kdk_A 16 ITRFAVNGKFVYVDQRATAILGYL 39 (121)
T ss_dssp EEEECTTSBEEEECTHHHHHTCCC
T ss_pred EEEECCCeeEEEEChhHHHHHCCC
Confidence 355799999999999999999963
No 36
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=72.58 E-value=2.4 Score=29.72 Aligned_cols=23 Identities=9% Similarity=0.080 Sum_probs=20.5
Q ss_pred eEeeCCCCcEEEehHHHHHhhCC
Q 044567 196 GFISDEFGRVTWTNEAYNKMVGQ 218 (288)
Q Consensus 196 ~fISDg~nRV~wvN~AYkrMVgq 218 (288)
-++.|..|++.++|.|+.+|.|-
T Consensus 12 i~~~d~~g~i~~~n~~~~~~~Gy 34 (117)
T 3f1p_A 12 LSEHSMDMKFTYCDDRITELIGY 34 (117)
T ss_dssp EEEECTTCBEEEECTHHHHHHCC
T ss_pred EEEECCCceEEEECcChhhhhCC
Confidence 45679999999999999999985
No 37
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=72.32 E-value=3.2 Score=30.19 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=21.9
Q ss_pred CCeEeeC---CCCcEEEehHHHHHhhCC
Q 044567 194 CPGFISD---EFGRVTWTNEAYNKMVGQ 218 (288)
Q Consensus 194 ~P~fISD---g~nRV~wvN~AYkrMVgq 218 (288)
-+.+|.| ..|+|.++|.|+.+|.|-
T Consensus 36 ~~i~~~d~~d~~g~i~~~N~a~~~l~G~ 63 (149)
T 3d72_A 36 VALILCDLKQKDTPIVYASEAFLYMTGY 63 (149)
T ss_dssp SCEEEEETTSTTCCEEEECHHHHHHHCC
T ss_pred ccEEEEeccCCCCcEEEECHHHHHHHCc
Confidence 5677888 799999999999999985
No 38
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=71.63 E-value=1.6 Score=35.37 Aligned_cols=31 Identities=16% Similarity=-0.011 Sum_probs=26.2
Q ss_pred cCCCCCCeEeeCCCCcEEEehHHHHHhhCCC
Q 044567 189 LGRDTCPGFISDEFGRVTWTNEAYNKMVGQE 219 (288)
Q Consensus 189 LE~Dt~P~fISDg~nRV~wvN~AYkrMVgq~ 219 (288)
|+.-...-+|.|..|||.++|.|+.++.|-+
T Consensus 28 l~~~~~gi~v~D~~g~I~~~N~a~~~~~G~~ 58 (152)
T 3mxq_A 28 LDQLSFALCIVRNDYVIVKVNEYFESRVIFD 58 (152)
T ss_dssp HHHHCCEEEEEETTSBEEEECHHHHHTSSSC
T ss_pred HhcCCCCEEEEcCCCEEEEECHHHHHHHCcC
Confidence 4444567899999999999999999998864
No 39
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=71.55 E-value=2.3 Score=34.57 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=21.0
Q ss_pred eEeeCCCCcEEEehHHHHHhhCC
Q 044567 196 GFISDEFGRVTWTNEAYNKMVGQ 218 (288)
Q Consensus 196 ~fISDg~nRV~wvN~AYkrMVgq 218 (288)
-+|.|..||+.++|.||-+|.|-
T Consensus 2 i~i~D~~g~i~~~N~a~~~l~Gy 24 (227)
T 3ewk_A 2 VSITDLQGRILYANDNFCAVSRY 24 (227)
T ss_dssp EEEEETTCBEEEECHHHHHHTTC
T ss_pred EEEECCCCcEEehHHHHHHHHCc
Confidence 47899999999999999999885
No 40
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=69.93 E-value=4 Score=29.53 Aligned_cols=35 Identities=20% Similarity=0.194 Sum_probs=27.9
Q ss_pred HhhhcCCCCCCeEeeCCCCcEEEehHHHHHhhCCC
Q 044567 185 RKANLGRDTCPGFISDEFGRVTWTNEAYNKMVGQE 219 (288)
Q Consensus 185 v~~~LE~Dt~P~fISDg~nRV~wvN~AYkrMVgq~ 219 (288)
...-|+.-..+.++.|..|+|.++|.+|.+|.|-+
T Consensus 42 ~~~~l~~~~~~i~~~d~~g~i~~~N~~~~~l~g~~ 76 (167)
T 1v9y_A 42 FFPALEQNMMGAVLINENDEVMFFNPAAEKLWGYK 76 (167)
T ss_dssp HHHHHHTCSSEEEEECTTSBEEEECHHHHHHHSCC
T ss_pred HHHHHHhCCCCEEEECCCCcEEEECHHHHHHhCCC
Confidence 33445555567889999999999999999999863
No 41
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=67.77 E-value=4.4 Score=31.58 Aligned_cols=34 Identities=26% Similarity=0.209 Sum_probs=27.6
Q ss_pred hhhcCCCCCCeEeeCCCCcEEEehHHHHHhhCCC
Q 044567 186 KANLGRDTCPGFISDEFGRVTWTNEAYNKMVGQE 219 (288)
Q Consensus 186 ~~~LE~Dt~P~fISDg~nRV~wvN~AYkrMVgq~ 219 (288)
+.-|+.-.-+-++.|..|+|.++|.|+.+|.|-+
T Consensus 83 ~~il~~~~~gvi~~D~~g~I~~~N~aa~~llg~~ 116 (190)
T 2jhe_A 83 SALLEALPEPVLSVDMKSKVDMANPASCQLFGQK 116 (190)
T ss_dssp HHHHHHCSSCEEEECTTCBEEEECHHHHHHHTSC
T ss_pred HHHHHhCCCcEEEEcCCCCEEEEcHHHHHHhCCC
Confidence 3345555667789999999999999999999864
No 42
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=67.23 E-value=2.9 Score=29.51 Aligned_cols=22 Identities=5% Similarity=-0.018 Sum_probs=18.8
Q ss_pred EeeCCCCcEEEehHHHHHhhCCC
Q 044567 197 FISDEFGRVTWTNEAYNKMVGQE 219 (288)
Q Consensus 197 fISDg~nRV~wvN~AYkrMVgq~ 219 (288)
++ |..|+|.++|.|+.+|.|-+
T Consensus 17 ~~-~~~g~i~~~N~a~~~l~G~~ 38 (120)
T 3mqq_A 17 VL-SRDRVIEDCNDELAAIFRCA 38 (120)
T ss_dssp EE-EETTEEEEECHHHHHHTTSC
T ss_pred EE-ecCCEEHHHHHHHHHHhCcC
Confidence 44 66999999999999999863
No 43
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=65.37 E-value=3.6 Score=29.07 Aligned_cols=23 Identities=17% Similarity=0.041 Sum_probs=20.3
Q ss_pred eEeeCCCCcEEEehHHHHHhhCC
Q 044567 196 GFISDEFGRVTWTNEAYNKMVGQ 218 (288)
Q Consensus 196 ~fISDg~nRV~wvN~AYkrMVgq 218 (288)
-++.|..|++.++|.|+.+|.|-
T Consensus 15 i~~~d~~g~i~~~n~~~~~~~G~ 37 (121)
T 3f1p_B 15 ISRHNIEGIFTFVDHRCVATVGY 37 (121)
T ss_dssp EEEECTTSBEEEECTTHHHHHSC
T ss_pred EEEECCCceEEEECcchhhhhCC
Confidence 45569999999999999999995
No 44
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=61.26 E-value=2.3 Score=34.09 Aligned_cols=37 Identities=5% Similarity=-0.065 Sum_probs=30.7
Q ss_pred hHHHhhhcCCCCCCeEeeCCCCcEEEehHH---HHHhhCC
Q 044567 182 DGERKANLGRDTCPGFISDEFGRVTWTNEA---YNKMVGQ 218 (288)
Q Consensus 182 deEv~~~LE~Dt~P~fISDg~nRV~wvN~A---YkrMVgq 218 (288)
-++.+.=|+.=...-++.|.+|+|+|+|.| |.++-|.
T Consensus 18 ~~~l~~IL~~~~~gI~~vD~~g~I~~~N~a~~~~~~i~g~ 57 (151)
T 2qkp_A 18 VEQANLILNHLPLEITFVNKDDIFQYYNDSVPAAEMVFKR 57 (151)
T ss_dssp HHHHHHHHHHSSSEEEEEETTSBEEEECCCSCGGGCSSCC
T ss_pred HHHHHHHHHhCCCceEEEcCCCeEEEEeCCCchhhhhcCC
Confidence 466677777766778999999999999999 8888873
No 45
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=56.22 E-value=9.7 Score=25.77 Aligned_cols=34 Identities=6% Similarity=-0.007 Sum_probs=24.3
Q ss_pred hhcCCCCCCeEeeCCCCcEEEehHHHHHhhCCCC
Q 044567 187 ANLGRDTCPGFISDEFGRVTWTNEAYNKMVGQEE 220 (288)
Q Consensus 187 ~~LE~Dt~P~fISDg~nRV~wvN~AYkrMVgq~e 220 (288)
.-++.-....++.|..+++.++|.++.+|.|-+.
T Consensus 11 ~~~~~~~~~i~~~d~~~~~~~~n~~~~~~~G~~~ 44 (125)
T 3nja_A 11 TAESDAGIGSWVLHMESGRLEWSQAVHDIFGTDS 44 (125)
T ss_dssp ------CCEEEEEETTTTEEEECHHHHHHHTCCT
T ss_pred HHHHhCCeeEEEEEcCCCcEEECHHHHHHhCCCc
Confidence 3344455567889999999999999999999643
No 46
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=55.61 E-value=6.5 Score=29.56 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=21.3
Q ss_pred CeEeeCCCCcEEEehHHHHHhhCC
Q 044567 195 PGFISDEFGRVTWTNEAYNKMVGQ 218 (288)
Q Consensus 195 P~fISDg~nRV~wvN~AYkrMVgq 218 (288)
..+|.|..|++.++|.|+.+|.|-
T Consensus 11 ~i~v~d~~G~i~yvn~~~~~~lGy 34 (111)
T 2vlg_A 11 IHAVLASNGRIIYISANSKLHLGY 34 (111)
T ss_dssp EEEEECTTSBEEEECTTHHHHHSC
T ss_pred EEEEEcCCCeEEEEChHHHHHhCC
Confidence 456789999999999999999985
No 47
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=52.66 E-value=5.7 Score=39.22 Aligned_cols=33 Identities=21% Similarity=0.401 Sum_probs=28.7
Q ss_pred hcCCCCCCeEeeCCCCcEEEehHHHHHhhCCCC
Q 044567 188 NLGRDTCPGFISDEFGRVTWTNEAYNKMVGQEE 220 (288)
Q Consensus 188 ~LE~Dt~P~fISDg~nRV~wvN~AYkrMVgq~e 220 (288)
.+|...-+-|++|.+|||..+|.||.+|.|...
T Consensus 523 lle~a~~~i~~~D~~grI~~~N~a~~~l~G~s~ 555 (635)
T 4eho_A 523 QVHASMQPVLITDAEGRILLMNDSFRDMLPAGS 555 (635)
T ss_dssp HHHHCSSCCEEEETTCCEEEECHHHHTTSCSSC
T ss_pred HHHhCCCcEEEECCCCeEeeHHHHHHHHHCcCh
Confidence 456677889999999999999999999999743
No 48
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=50.86 E-value=11 Score=32.11 Aligned_cols=25 Identities=8% Similarity=0.151 Sum_probs=22.2
Q ss_pred CCeEeeCC---CCcEEEehHHHHHhhCC
Q 044567 194 CPGFISDE---FGRVTWTNEAYNKMVGQ 218 (288)
Q Consensus 194 ~P~fISDg---~nRV~wvN~AYkrMVgq 218 (288)
-+-||.|. .|++.++|.||.+|.|-
T Consensus 22 ~~i~~~D~~~~~g~i~~~N~a~~~l~G~ 49 (332)
T 2wkq_A 22 KNFVITDPRLPDNPIIFASDSFLQLTEY 49 (332)
T ss_dssp SEEEEECTTSTTCCEEEECHHHHHHHCC
T ss_pred CcEEEecCCCCCCCEEEeehHHHHHhCC
Confidence 35688999 99999999999999985
No 49
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=44.83 E-value=7 Score=33.32 Aligned_cols=30 Identities=17% Similarity=0.099 Sum_probs=25.0
Q ss_pred CCCCCCeEeeCCCCcEEEehHHHHHhhCCC
Q 044567 190 GRDTCPGFISDEFGRVTWTNEAYNKMVGQE 219 (288)
Q Consensus 190 E~Dt~P~fISDg~nRV~wvN~AYkrMVgq~ 219 (288)
+.-.-+-++.|..|+|.++|.|+.+|.|-+
T Consensus 15 ~~~~~~i~~~d~~g~i~~~N~a~~~l~G~~ 44 (349)
T 3a0r_A 15 ESLETAIITLSKDGRITEWNKKAEQLFGLK 44 (349)
T ss_dssp GGSSSEEEEEESSSBCSCBCHHHHHHHSCC
T ss_pred hhhcCeEEEECCCCCEEeeHHHHHHHhCCC
Confidence 344456788999999999999999999853
No 50
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=43.60 E-value=13 Score=25.86 Aligned_cols=24 Identities=4% Similarity=0.141 Sum_probs=19.8
Q ss_pred EeeC-CCCcEEEehHHHHHhhCCCC
Q 044567 197 FISD-EFGRVTWTNEAYNKMVGQEE 220 (288)
Q Consensus 197 fISD-g~nRV~wvN~AYkrMVgq~e 220 (288)
+.-| ..|++.|+|.++.+|.|-+.
T Consensus 7 w~~d~~~~~~~~~n~~~~~l~G~~~ 31 (115)
T 3h9w_A 7 WKINWQTMAFEYIGPQIEALLGWPQ 31 (115)
T ss_dssp EEEETTTTEEEEECTHHHHHHCSCG
T ss_pred EEEEcCCCcEEEEChhHHHHhCCCh
Confidence 4456 68999999999999999643
No 51
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=41.50 E-value=13 Score=25.06 Aligned_cols=35 Identities=11% Similarity=-0.089 Sum_probs=27.1
Q ss_pred HhhhcCCCCCCeEeeCCCCcEEEehHHHHHhhCCC
Q 044567 185 RKANLGRDTCPGFISDEFGRVTWTNEAYNKMVGQE 219 (288)
Q Consensus 185 v~~~LE~Dt~P~fISDg~nRV~wvN~AYkrMVgq~ 219 (288)
.+.-++.-....|+.|..+++.++|.++.+|.|-+
T Consensus 6 ~~~l~~~~~~~i~~~d~~~~~~~~n~~~~~~~G~~ 40 (118)
T 3icy_A 6 LQALVDNIPAAIYHLDVSGQATIRFRPPAFLKTLV 40 (118)
T ss_dssp HHHHHTTCCCCCEEECTTSCEEECCCCCGGGGGGE
T ss_pred HHHHHhcCCceEEEEEcCCCceEEechhHhhcCCC
Confidence 33444554556688999999999999999999863
No 52
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=33.87 E-value=13 Score=33.35 Aligned_cols=21 Identities=14% Similarity=0.015 Sum_probs=19.0
Q ss_pred EeeCCCCcEEEehHHHHHhhC
Q 044567 197 FISDEFGRVTWTNEAYNKMVG 217 (288)
Q Consensus 197 fISDg~nRV~wvN~AYkrMVg 217 (288)
+|.|..|+|.++|.|+.+|.+
T Consensus 184 ivvD~~G~Ii~~N~aA~~ll~ 204 (305)
T 2ykf_A 184 IRLDVDGVVSYASPNALSAYH 204 (305)
Confidence 678999999999999999864
No 53
>3ksp_A Calcium/calmodulin-dependent kinase II associatio; cystatin-like fold, structural genomics, joint center for ST genomics, JCSG; HET: MSE NHE; 2.59A {Exiguobacterium sibiricum 255-15}
Probab=22.53 E-value=1.6e+02 Score=23.41 Aligned_cols=34 Identities=18% Similarity=0.370 Sum_probs=23.9
Q ss_pred eeEEEEEEEeeCCeeee-eecceeeEEeecCeeeEEe
Q 044567 243 FTCRVRLQYSYGKEKNS-LTLPCDVWRMDGGGFAWRL 278 (288)
Q Consensus 243 FTCrVRiqw~~~~ek~s-~tvPCDVwRLd~GgFaWRl 278 (288)
.|+++.++=+.+++..+ -.-.++||+...|+ ||+
T Consensus 84 Vt~~~~~~~~~~g~~~~~~~~~t~VW~~~~g~--Wrl 118 (129)
T 3ksp_A 84 VQEIVEDHFSYGRSMYIGRFRSVSLYHWANEG--WKW 118 (129)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEEEEETTE--EEE
T ss_pred EEEEEEEEEecCCeEEeEEEEEEEEEEEeCCe--eEE
Confidence 56677776666666433 35679999999998 654
Done!