Citrus Sinensis ID: 044568

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------
Protein Sequence
SLCTKLSNFYRSSFNARNSPWISRVSWTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRPMKCAVMML
Secondary Structure (PSIPRED)
cccccccccEEcccccccccEEEEEccEEHHEEHHHHHcccEEcEEEEEEEEEcEEEEcccccccEEEcccccccHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccEEHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccEEccccccccEEEEHHHccccHHHHHHHHHHHHHHHHHHHHHHHcHEcccccHHHEEEEEEEcccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEcccHcHEEEcccccccHcHccHHEEcccccEEEEEEcccccHHHHHccccccccHHHHHHEEEEEEEccccccccccccccHHHHHHHHHHHHHccccHHccccccccHHHHHHHHHHHHHHccccHcHcccccEEEEc
Coil and Loop (DISEMBL)
slctklsnfyrssfnarnspwisrvSWTADIEVLSVAMRgskctrirgglllnvpvrakltsvsgkierpvrngsltdiifcsaernpywnQRVRIALDVAKGILylhdeceppilhcdikpqnilmDEFWTAKILDfglaklpnedfvidkrdkgymapecykrtpisvkadVYGYGIVLLETICCrknmeidaskpeeiiLTNWVYKCFINrelnklvrgtkvdkkNLENLVKVGLwcvqdepalrpmkCAVMML
Flexible Loop (DISEMBL)
slctklsnfyrssfnarnspwisrvSWTADIEVLSVAMRGSKctrirgglllnvpvrakltsvsgkierpvrngsltdIIFCSAernpywnqRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIdkrdkgymapecykrtpisvkadVYGYGIVLLETICCRKNMeidaskpeeiiLTNWVYKCFINRELNklvrgtkvdkknleNLVKVglwcvqdepalrpMKCAVMML
Low Complexity Region (SEG)
SLCTKLSNFYRSSFNARNSPWISRVSWTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRPMKCAVMML
Disordered region (IsUnstruct)
******SNFYRSSFNARNSPWISRVSWTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALR*********
Disordered Region (DISOPRED)
**C*K**NFYRSSFNARNSPWISRVSWTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICC*KN***********ILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRPMKCAVMML
Disordered Region (DISEMBL)
SLCTKLSNFYRSSFNARNSPWISRVSWTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRPMKCAVMML
Disordered Region (DISPRO)
**CTKLSNFYRSSFNARNSPWISRVSWTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRPMKCAVMM*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
SLCTKLSNFYRSSFNARNSPWISRVSWTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFIxxxxxxxxxxxxxxxxxxxxxVKVGLWCVQDEPALRPMKCAVMML
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	257	2.2.26 [Sep-21-2011]
Q39202	832	G-type lectin S-receptor-	yes	no	0.692	0.213	0.427	3e-40
Q9XID3	829	G-type lectin S-receptor-	no	no	0.723	0.224	0.391	4e-33
Q9FLV4	872	G-type lectin S-receptor-	no	no	0.712	0.209	0.379	7e-32
Q39203	797	G-type lectin S-receptor-	no	no	0.719	0.232	0.38	9e-31
O64477	828	G-type lectin S-receptor-	no	no	0.712	0.221	0.378	2e-29
Q8RWZ5	821	G-type lectin S-receptor-	no	no	0.649	0.203	0.401	3e-29
Q93ZS4	632	Protein NSP-INTERACTING K	no	no	0.630	0.256	0.370	5e-28
Q9SZD5	669	L-type lectin-domain cont	no	no	0.715	0.275	0.364	5e-28
Q0WVM4	634	Probable LRR receptor-lik	no	no	0.653	0.264	0.392	6e-28
O65238	872	G-type lectin S-receptor-	no	no	0.715	0.211	0.355	1e-27

>sp|Q39202|RLK1_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 OS=Arabidopsis thaliana GN=RLK1 PE=2 SV=2

 Score =  165 bits (417), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 82/192 (42%), Positives = 121/192 (63%), Gaps = 14/192 (7%)

Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           G+L + +F      P W  R  IA+ +A+GILYLH+EC   I+HCDIKPQNIL+DE++T 
Sbjct: 614 GTLANFLF--RRPRPSWEDRKNIAVAIARGILYLHEECSEQIIHCDIKPQNILLDEYYTP 671

Query: 134 KILDFGLAK--LPNEDFVID--KRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRK 189
           +I DFGLAK  L N+ + +   +  KGY+APE ++ +PI+ K DVY YG++LLE +CC+K
Sbjct: 672 RISDFGLAKLLLMNQTYTLTNIRGTKGYVAPEWFRNSPITSKVDVYSYGVMLLEIVCCKK 731

Query: 190 NMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKV---DKKNLENLVKVGLWCVQDEPA 246
            ++++    + +IL NW Y CF    L  L         D + +E  VK+ +WC+Q+E  
Sbjct: 732 AVDLE----DNVILINWAYDCFRQGRLEDLTEDDSEAMNDMETVERYVKIAIWCIQEEHG 787

Query: 247 LRP-MKCAVMML 257
           +RP M+    ML
Sbjct: 788 MRPNMRNVTQML 799

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9XID3|Y1343_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 OS=Arabidopsis thaliana GN=At1g34300 PE=1 SV=1

 Score =  141 bits (356), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 78/199 (39%), Positives = 113/199 (56%), Gaps = 13/199 (6%)

Query: 71  VRNGSLTDIIFCS-AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE 129
           +RNGSL + +F + + +   W  R  IAL  AKGI YLH+EC   I+HCDIKP+NIL+D+
Sbjct: 559 MRNGSLDNFLFTTDSAKFLTWEYRFNIALGTAKGITYLHEECRDCIVHCDIKPENILVDD 618

Query: 130 FWTAKILDFGLAKLPNE-----DFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLET 184
            + AK+ DFGLAKL N      +    +  +GY+APE     PI+ K+DVY YG+VLLE 
Sbjct: 619 NFAAKVSDFGLAKLLNPKDNRYNMSSVRGTRGYLAPEWLANLPITSKSDVYSYGMVLLEL 678

Query: 185 ICCRKNMEIDASKPEEIILTNWVYKCFINREL-----NKLVRGTKVDKKNLENLVKVGLW 239
           +  ++N ++ + K      + W Y+ F           +L     VD + +  +VK   W
Sbjct: 679 VSGKRNFDV-SEKTNHKKFSIWAYEEFEKGNTKAILDTRLSEDQTVDMEQVMRMVKTSFW 737

Query: 240 CVQDEPALRP-MKCAVMML 257
           C+Q++P  RP M   V ML
Sbjct: 738 CIQEQPLQRPTMGKVVQML 756

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FLV4|Y5248_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 OS=Arabidopsis thaliana GN=At5g24080 PE=2 SV=1

 Score =  137 bits (345), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 74/195 (37%), Positives = 115/195 (58%), Gaps = 12/195 (6%)

Query: 73  NGSLTDIIFCSAERNPY--WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           NGSL   IF S +      W  R  IA+  A+GI Y H++C   I+HCDIKP+NIL+D+ 
Sbjct: 608 NGSLDKWIFSSEQTANLLDWRTRFEIAVATAQGIAYFHEQCRNRIIHCDIKPENILLDDN 667

Query: 131 WTAKILDFGLAKLPNEDF----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC 186
           +  K+ DFGLAK+   +      + +  +GY+APE     PI+VKADVY YG++LLE + 
Sbjct: 668 FCPKVSDFGLAKMMGREHSHVVTMIRGTRGYLAPEWVSNRPITVKADVYSYGMLLLEIVG 727

Query: 187 CRKNMEIDASKPEEIILTNWVYKCFIN----RELNKLVRGTKVDKKNLENLVKVGLWCVQ 242
            R+N+++ +   E+     W YK   N    + ++K ++G   +++ ++ L KV  WC+Q
Sbjct: 728 GRRNLDM-SYDAEDFFYPGWAYKELTNGTSLKAVDKRLQGVAEEEEVVKAL-KVAFWCIQ 785

Query: 243 DEPALRPMKCAVMML 257
           DE ++RP    V+ L
Sbjct: 786 DEVSMRPSMGEVVKL 800

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q39203|SD22_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 OS=Arabidopsis thaliana GN=SD22 PE=1 SV=1

 Score =  134 bits (336), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 76/200 (38%), Positives = 110/200 (55%), Gaps = 15/200 (7%)

Query: 73  NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT 132
            GSL+  +  ++ +   W  R RIAL  AKGI YLH+ C   I+HCDIKP+NIL+D  + 
Sbjct: 539 QGSLSSYLSRTSPKLLSWETRFRIALGTAKGIAYLHEGCRDCIIHCDIKPENILLDSDYN 598

Query: 133 AKILDFGLAKLPNEDF----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCR 188
           AK+ DFGLAKL   DF       +   GY+APE     PI+ KADVY +G+ LLE I  R
Sbjct: 599 AKVSDFGLAKLLGRDFSRVLATMRGTWGYVAPEWISGLPITTKADVYSFGMTLLELIGGR 658

Query: 189 KNMEIDA-------SKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVK---VGL 238
           +N+ +++       ++PE+     W  +  I   ++ +V      + N E + +   V +
Sbjct: 659 RNVIVNSDTLGEKETEPEKWFFPPWAAREIIQGNVDSVVDSRLNGEYNTEEVTRMATVAI 718

Query: 239 WCVQDEPALRP-MKCAVMML 257
           WC+QD   +RP M   V ML
Sbjct: 719 WCIQDNEEIRPAMGTVVKML 738

Serine/threonine-protein kinase.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O64477|Y2913_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 OS=Arabidopsis thaliana GN=At2g19130 PE=2 SV=1

 Score =  129 bits (324), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/198 (37%), Positives = 106/198 (53%), Gaps = 15/198 (7%)

Query: 73  NGSLTDIIFCSAERNPY---WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE 129
           NGSL   +F +         W  R +IAL  A+G+ YLHDEC   I+HCDIKP+NIL+D 
Sbjct: 570 NGSLDSHLFLNQVEEKIVLGWKLRFQIALGTARGLAYLHDECRDCIIHCDIKPENILLDS 629

Query: 130 FWTAKILDFGLAKLPNEDF----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETI 185
            +  K+ DFGLAKL   DF       +  +GY+APE      I+ KADVY YG++L E +
Sbjct: 630 QFCPKVADFGLAKLVGRDFSRVLTTMRGTRGYLAPEWISGVAITAKADVYSYGMMLFELV 689

Query: 186 CCRKNMEIDASKPEEI-ILTNWVYKCFI-NRELNKLV----RGTKVDKKNLENLVKVGLW 239
             R+N E   S+ E++    +W       + ++  LV     G  VD + +    KV  W
Sbjct: 690 SGRRNTE--QSENEKVRFFPSWAATILTKDGDIRSLVDPRLEGDAVDIEEVTRACKVACW 747

Query: 240 CVQDEPALRPMKCAVMML 257
           C+QDE + RP    V+ +
Sbjct: 748 CIQDEESHRPAMSQVVQI 765

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8RWZ5|SD25_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana GN=SD25 PE=1 SV=1

 Score =  129 bits (323), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 71/177 (40%), Positives = 103/177 (58%), Gaps = 10/177 (5%)

Query: 90  WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED-- 147
           W+ R  IAL  AKG+ YLH++C+  I+HCDIKP+NIL+D+ + AK+ DFGLAKL   +  
Sbjct: 589 WDTRFNIALGTAKGLAYLHEDCDARIVHCDIKPENILLDDNFNAKVSDFGLAKLMTREQS 648

Query: 148 --FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTN 205
             F   +  +GY+APE      IS K+DVY YG+VLLE I  RKN +  +   E+    +
Sbjct: 649 HVFTTMRGTRGYLAPEWITNYAISEKSDVYSYGMVLLELIGGRKNYD-PSETSEKCHFPS 707

Query: 206 WVYKCFINRELNKLVRG----TKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML 257
           + +K     +L  +V G      V  + ++  +K  LWC+Q++   RP M   V ML
Sbjct: 708 FAFKKMEEGKLMDIVDGKMKNVDVTDERVQRAMKTALWCIQEDMQTRPSMSKVVQML 764

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q93ZS4|NIK3_ARATH Protein NSP-INTERACTING KINASE 3 OS=Arabidopsis thaliana GN=NIK3 PE=1 SV=1

 Score =  124 bits (312), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 67/181 (37%), Positives = 104/181 (57%), Gaps = 19/181 (10%)

Query: 90  WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFV 149
           W++R +IA+  A+G++YLH++C+P I+H D+K  NIL+DE + A + DFGLAKL      
Sbjct: 399 WSRRKKIAVGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKL------ 452

Query: 150 IDKRDK----------GYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPE 199
           +D RD           G++APE       S K DV+G+GI+LLE I  +K ++   S  +
Sbjct: 453 LDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDFGRSAHQ 512

Query: 200 EIILTNWVYKCFINRELNKLVR---GTKVDKKNLENLVKVGLWCVQDEPALRPMKCAVMM 256
           + ++ +WV K     +L +L+      K D+  LE +V+V L C Q  P+ RP    VM 
Sbjct: 513 KGVMLDWVKKLHQEGKLKQLIDKDLNDKFDRVELEEIVQVALLCTQFNPSHRPKMSEVMK 572

Query: 257 L 257
           +
Sbjct: 573 M 573

Involved in defense response to geminivirus infection.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SZD5|LRK59_ARATH L-type lectin-domain containing receptor kinase V.9 OS=Arabidopsis thaliana GN=LECRK59 PE=2 SV=1

 Score =  124 bits (312), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 70/192 (36%), Positives = 105/192 (54%), Gaps = 8/192 (4%)

Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           GSL   ++   E++  W+QR +I  DVA G+ YLH +    I+H DIKP N+L+D+    
Sbjct: 424 GSLDKFLYHQPEQSLDWSQRFKIIKDVASGLCYLHHQWVQVIIHRDIKPANVLLDDSMNG 483

Query: 134 KILDFGLAKLPNEDFVIDKRDK----GYMAPECYKRTPISVKADVYGYGIVLLETICCRK 189
           K+ DFGLAKL    F     +     GY++PE  +    S  +DV+ +GI++LE  C R+
Sbjct: 484 KLGDFGLAKLCEHGFDPQTSNVAGTFGYISPELSRTGKASTSSDVFAFGILMLEITCGRR 543

Query: 190 NMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLV----KVGLWCVQDEP 245
            +   AS P E++LT+WV  C+ +  L  +    K D K LE  V    K+GL+C     
Sbjct: 544 PVLPRASSPSEMVLTDWVLDCWEDDILQVVDERVKQDDKYLEEQVALVLKLGLFCSHPVA 603

Query: 246 ALRPMKCAVMML 257
           A+RP   +V+  
Sbjct: 604 AVRPSMSSVIQF 615

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q0WVM4|Y2239_ARATH Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1

 Score =  124 bits (311), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 69/176 (39%), Positives = 102/176 (57%), Gaps = 8/176 (4%)

Query: 90  WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN-EDF 148
           WN R +IA+  A+G+ YLH++C+P I+H D+K  NIL+DE++ A + DFGLAKL N ED 
Sbjct: 393 WNTRKKIAIGAARGLFYLHEQCDPKIIHRDVKAANILLDEYFEAVVGDFGLAKLLNHEDS 452

Query: 149 VID---KRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTN 205
            +    +   G++APE       S K DV+G+GI+LLE I   + +E   S  ++  +  
Sbjct: 453 HVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMRALEFGKSVSQKGAMLE 512

Query: 206 WVYKCFINRELNKLVR---GTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML 257
           WV K     ++ +LV    GT  D+  +  +++V L C Q  PA RP M   V ML
Sbjct: 513 WVRKLHKEMKVEELVDRELGTTYDRIEVGEMLQVALLCTQFLPAHRPKMSEVVQML 568

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O65238|Y5537_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 OS=Arabidopsis thaliana GN=At5g35370 PE=2 SV=2

 Score =  123 bits (309), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 75/211 (35%), Positives = 108/211 (51%), Gaps = 27/211 (12%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           + +GSL   +F        W +R  IAL  A+G+ YLH  C+  I+HCD+KP+NIL+ + 
Sbjct: 591 MNHGSLEKTLFSGNGPVLEWQERFDIALGTARGLAYLHSGCDQKIIHCDVKPENILLHDH 650

Query: 131 WTAKILDFGLAKLPNED----FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC 186
           +  KI DFGL+KL N++    F   +  +GY+APE      IS KADVY YG+VLLE + 
Sbjct: 651 FQPKISDFGLSKLLNQEESSLFTTMRGTRGYLAPEWITNAAISEKADVYSYGMVLLELVS 710

Query: 187 CRKNMEIDASKPEEIILTN-------------WVYKCFINRELNKLVR---------GTK 224
            RKN     S+   +   N              VY      ++++  R           +
Sbjct: 711 GRKNCSF-RSRSNSVTEDNNQNHSSTTTTSTGLVYFPLYALDMHEQGRYMELADPRLEGR 769

Query: 225 VDKKNLENLVKVGLWCVQDEPALRPMKCAVM 255
           V  +  E LV++ L CV +EPALRP   AV+
Sbjct: 770 VTSQEAEKLVRIALCCVHEEPALRPTMAAVV 800

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	257
359477046	798	PREDICTED: G-type lectin S-receptor-like	0.723	0.233	0.645	6e-66
359477052	767	PREDICTED: G-type lectin S-receptor-like	0.723	0.242	0.635	8e-66
225431565	791	PREDICTED: G-type lectin S-receptor-like	0.723	0.235	0.640	9e-66
147867430	930	hypothetical protein VITISV_038238 [Viti	0.723	0.2	0.640	1e-65
224116044	313	predicted protein [Populus trichocarpa]	0.715	0.587	0.610	8e-63
224105693	313	predicted protein [Populus trichocarpa]	0.715	0.587	0.6	3e-62
357478041	854	Receptor like kinase [Medicago truncatul	0.723	0.217	0.593	9e-61
356546166	810	PREDICTED: G-type lectin S-receptor-like	0.719	0.228	0.616	4e-60
224093336	755	predicted protein [Populus trichocarpa]	0.723	0.246	0.595	1e-59
359477048	792	PREDICTED: G-type lectin S-receptor-like	0.723	0.234	0.583	8e-59

>gi|359477046|ref|XP_002275786.2| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]

 Score =  256 bits (654), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 124/192 (64%), Positives = 150/192 (78%), Gaps = 6/192 (3%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           + NGSL +++F +  R P+WN+RVRIALDVA+GILYLH+ECE PI+HCDIKPQNILMDEF
Sbjct: 591 MSNGSLANLLFNAGTR-PHWNERVRIALDVARGILYLHEECETPIIHCDIKPQNILMDEF 649

Query: 131 WTAKILDFGLAKLPNED----FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC 186
             AKI DFGLAKL   D    F   +  +GY+APE  + TPISVKAD+Y YGIVLLE +C
Sbjct: 650 LNAKISDFGLAKLLMPDQTRTFTGVRGTRGYLAPEWQRNTPISVKADIYSYGIVLLEIVC 709

Query: 187 CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPA 246
           CRKNME+    PEEIIL+NWVY+C ++REL+KLV     DKK LE +VKVGLWC+QDEPA
Sbjct: 710 CRKNMEVQVKNPEEIILSNWVYQCMVSRELDKLVADEVADKKTLERMVKVGLWCIQDEPA 769

Query: 247 LRP-MKCAVMML 257
           LRP MK  V++L
Sbjct: 770 LRPSMKSVVLIL 781

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477052|ref|XP_002276297.2| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1-like [Vitis vinifera]

 Score =  256 bits (653), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 122/192 (63%), Positives = 154/192 (80%), Gaps = 6/192 (3%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           + N SL DI+F S  R P W++RVRIALDVA+GILYLH+ECE PI+HCDIKPQNILMD+F
Sbjct: 560 MSNRSLADILFKSKTRPP-WDERVRIALDVARGILYLHEECEAPIIHCDIKPQNILMDDF 618

Query: 131 WTAKILDFGLAKLPNED----FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC 186
           WTAKI DFGLAKL   D    F   +  +GY+APE  +  PISVKADVY YGIVLLE +C
Sbjct: 619 WTAKISDFGLAKLLMPDQTRTFTGVRGTRGYLAPEWQQNIPISVKADVYSYGIVLLELVC 678

Query: 187 CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPA 246
           CR+N+E++ S+PEEI+L+NW YKCF+  EL+KL+ G +V++K+LE +VK+GLWC+QDEPA
Sbjct: 679 CRRNLEVNVSEPEEIVLSNWAYKCFVAGELHKLLGGEEVERKSLEQMVKLGLWCIQDEPA 738

Query: 247 LRP-MKCAVMML 257
           LRP +K  V+ML
Sbjct: 739 LRPSIKSIVLML 750

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431565|ref|XP_002276127.1| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1-like [Vitis vinifera]

 Score =  256 bits (653), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 123/192 (64%), Positives = 153/192 (79%), Gaps = 6/192 (3%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           + N SL DI+F S  R P W++RVRIALDVA+GILYLH+ECE PI+HCDIKPQNILMD+F
Sbjct: 584 MSNRSLADILFKSKTRPP-WDERVRIALDVARGILYLHEECEAPIIHCDIKPQNILMDDF 642

Query: 131 WTAKILDFGLAKLPNED----FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC 186
           WTAKI DFGLAKL   D    F   +  +GY+APE  +  PISVKADVY YGIVLLE +C
Sbjct: 643 WTAKISDFGLAKLLMPDQTRTFTGVRGTRGYLAPEWQQNIPISVKADVYSYGIVLLELVC 702

Query: 187 CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPA 246
           CR+N+E++ SKPEEI+L+NW YKCF+  EL KL+ G +V++K+LE +VK+GLWC+QDEPA
Sbjct: 703 CRRNLEVNVSKPEEIVLSNWAYKCFVAGELYKLLGGEEVERKSLEEMVKLGLWCIQDEPA 762

Query: 247 LRP-MKCAVMML 257
           LRP +K  V+ML
Sbjct: 763 LRPSIKSIVLML 774

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147867430|emb|CAN78998.1| hypothetical protein VITISV_038238 [Vitis vinifera]

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 123/192 (64%), Positives = 153/192 (79%), Gaps = 6/192 (3%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           + N SL DI+F S  R P W++RVRIALDVA+GILYLH+ECE PI+HCDIKPQNILMD+F
Sbjct: 723 MSNRSLADILFKSKTRPP-WDERVRIALDVARGILYLHEECEAPIIHCDIKPQNILMDDF 781

Query: 131 WTAKILDFGLAKLPNED----FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC 186
           WTAKI DFGLAKL   D    F   +  +GY+APE  +  PISVKADVY YGIVLLE +C
Sbjct: 782 WTAKISDFGLAKLLMPDQTRTFTGVRGTRGYLAPEWQQNIPISVKADVYSYGIVLLELVC 841

Query: 187 CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPA 246
           CR+N+E++ SKPEEI+L+NW YKCF+  EL KL+ G +V++K+LE +VK+GLWC+QDEPA
Sbjct: 842 CRRNLEVNVSKPEEIVLSNWAYKCFVAGELYKLLGGEEVERKSLEEMVKLGLWCIQDEPA 901

Query: 247 LRP-MKCAVMML 257
           LRP +K  V+ML
Sbjct: 902 LRPSIKSIVLML 913

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116044|ref|XP_002332034.1| predicted protein [Populus trichocarpa] gi|222875259|gb|EEF12390.1| predicted protein [Populus trichocarpa]

 Score =  246 bits (627), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 116/190 (61%), Positives = 148/190 (77%), Gaps = 6/190 (3%)

Query: 73  NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT 132
           NGSL D++F   ER P W+ RV+IALD+AKGILYLH+ECE PI+HCDIKPQNILMD+FW 
Sbjct: 108 NGSLADLLF-RTERIPNWSHRVKIALDIAKGILYLHEECEAPIIHCDIKPQNILMDDFWN 166

Query: 133 AKILDFGLAKL--PNED--FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCR 188
           AKI DFGLAKL  P++   F I +  +GY+APE +K TPISVKADVY YG++LLE + CR
Sbjct: 167 AKISDFGLAKLLVPDQTRTFTIVRGTRGYLAPEWHKNTPISVKADVYSYGVMLLEIVFCR 226

Query: 189 KNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALR 248
           +N+E + S+PEE+ L+NW Y+  + REL+KL  G  VD +NLE +V VG+WC+QDEP +R
Sbjct: 227 RNIETNVSRPEEVQLSNWAYELLVERELDKLDLGEDVDLQNLEKMVMVGIWCIQDEPGIR 286

Query: 249 P-MKCAVMML 257
           P MK  V+ML
Sbjct: 287 PSMKSVVLML 296

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105693|ref|XP_002333784.1| predicted protein [Populus trichocarpa] gi|222838485|gb|EEE76850.1| predicted protein [Populus trichocarpa]

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 114/190 (60%), Positives = 147/190 (77%), Gaps = 6/190 (3%)

Query: 73  NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT 132
           NGSL D++F   ER P W+ RV+IALD+AKGILYLH+ECE PI+HCDIKPQNILMD+FW 
Sbjct: 108 NGSLADLLF-RTERIPNWSHRVKIALDIAKGILYLHEECEAPIIHCDIKPQNILMDDFWN 166

Query: 133 AKILDFGLAKL--PNED--FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCR 188
           AKI DFGLAKL  P++   F + +  +GY+APE +K TPISVKADVY YG++LLE + CR
Sbjct: 167 AKISDFGLAKLLVPDQTRTFTMVRGTRGYLAPEWHKNTPISVKADVYSYGVMLLEIVFCR 226

Query: 189 KNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALR 248
           +N+E + S+PEE+ L+NW Y+  + REL+KL  G  VD +N E +V VG+WC+QDEP +R
Sbjct: 227 RNIETNVSRPEEVQLSNWAYELLVERELDKLDLGEDVDLQNFEKMVMVGIWCIQDEPGIR 286

Query: 249 P-MKCAVMML 257
           P MK  V+ML
Sbjct: 287 PSMKSVVLML 296

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478041|ref|XP_003609306.1| Receptor like kinase [Medicago truncatula] gi|357478087|ref|XP_003609329.1| Receptor like kinase [Medicago truncatula] gi|355510361|gb|AES91503.1| Receptor like kinase [Medicago truncatula] gi|355510384|gb|AES91526.1| Receptor like kinase [Medicago truncatula]

 Score =  239 bits (610), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 114/192 (59%), Positives = 145/192 (75%), Gaps = 6/192 (3%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           + NGSL  ++F   +R P WN+RVRIALD+A+GILYLH+EC+ PI+HCD+KPQNILMD+F
Sbjct: 603 MSNGSLGKLLF-GDQRRPDWNERVRIALDIARGILYLHEECDAPIIHCDLKPQNILMDKF 661

Query: 131 WTAKILDFGLAKLPNED----FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC 186
           WTAKI DFGLAKL   D    F + +  +GYMAPE  K   ISVK DVY YGIVLLE +C
Sbjct: 662 WTAKISDFGLAKLLMPDQTRTFTMVRGTRGYMAPEWNKNVAISVKTDVYSYGIVLLEILC 721

Query: 187 CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPA 246
           CR+N++++  +PEEI+L  W YKCFI  ++NKLV    +DK  +EN+VKV LWC+QD+P 
Sbjct: 722 CRRNLDVNVLEPEEILLAGWTYKCFIAGDVNKLVPSEAIDKNVMENMVKVALWCIQDDPF 781

Query: 247 LRP-MKCAVMML 257
           LRP MK  V+ML
Sbjct: 782 LRPTMKGVVLML 793

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546166|ref|XP_003541502.1| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1-like [Glycine max]

 Score =  237 bits (604), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 119/193 (61%), Positives = 149/193 (77%), Gaps = 8/193 (4%)

Query: 73  NGSLTDIIF-CSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 131
           NGSL ++IF   ++R P W++RVRIAL++AKGILYLH+ECE PI+HCDIKPQNILMDEFW
Sbjct: 601 NGSLENLIFGAQSQRRPGWDERVRIALEIAKGILYLHEECEAPIIHCDIKPQNILMDEFW 660

Query: 132 TAKILDFGLAKL--PNEDFVID--KRDKGYMAPECYK-RTPISVKADVYGYGIVLLETIC 186
           TAKI DFGLAKL  P++   I   +  +GY+APE  K   PISVK DVY YGIVLLE +C
Sbjct: 661 TAKISDFGLAKLLMPDQTRTITGARGTRGYVAPEWDKLNIPISVKVDVYSYGIVLLEILC 720

Query: 187 CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKK-NLENLVKVGLWCVQDEP 245
           CR+N+E+  S+PE  +L+NW YKCF++ +LNKL     VD K ++EN+VKV LWC+QDEP
Sbjct: 721 CRRNIEVHVSEPEAALLSNWAYKCFVSGQLNKLFLWESVDNKTSVENIVKVALWCIQDEP 780

Query: 246 ALRP-MKCAVMML 257
            LRP MK  V+ML
Sbjct: 781 FLRPTMKSVVLML 793

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093336|ref|XP_002309887.1| predicted protein [Populus trichocarpa] gi|222852790|gb|EEE90337.1| predicted protein [Populus trichocarpa]

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 115/193 (59%), Positives = 146/193 (75%), Gaps = 7/193 (3%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           + NGSL +++F   ER P W+ RV+IALD+AKGILYLH+ECE PI+HCDIKPQNILMD+F
Sbjct: 547 MSNGSLANLLF-RNERIPDWSDRVKIALDIAKGILYLHEECEAPIMHCDIKPQNILMDDF 605

Query: 131 WTAKILDFGLAKL--PNED--FVIDKRDKGYMAPECYK-RTPISVKADVYGYGIVLLETI 185
           WTAKI DFGLAKL  P++     I +   GYMAPE  K  TP SVK DVY YG+VLLE +
Sbjct: 606 WTAKISDFGLAKLLVPDQTRTLTIARGTPGYMAPEWTKISTPTSVKVDVYSYGVVLLEIV 665

Query: 186 CCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEP 245
            CR+NM+I+ SKPEE++L+ W Y+  + REL++L  G  VD++ LE +V +G+WC+QDEP
Sbjct: 666 FCRRNMKINVSKPEEVLLSKWAYELLVARELDRLDLGEDVDRQKLEKMVMIGIWCIQDEP 725

Query: 246 ALRP-MKCAVMML 257
            LRP MK  VMML
Sbjct: 726 GLRPSMKTVVMML 738

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477048|ref|XP_002275811.2| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1-like [Vitis vinifera]

 Score =  233 bits (593), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 112/192 (58%), Positives = 150/192 (78%), Gaps = 6/192 (3%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +RNGSL D++F +AE+   W  RVRIAL++A+GILYLH+ECE  I+HCDIKPQNILMD+ 
Sbjct: 587 MRNGSLADLLF-NAEKRSIWKVRVRIALELARGILYLHEECESQIVHCDIKPQNILMDDA 645

Query: 131 WTAKILDFGLAKL--PNEDFVID--KRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC 186
           WTAKI DFG +KL  PN++ ++   +   GY APE +K T ISVKAD+Y +G+VLLE +C
Sbjct: 646 WTAKISDFGFSKLLMPNQEGIVTGIRGTAGYSAPEWHKNTLISVKADIYSFGVVLLEIVC 705

Query: 187 CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPA 246
           CR+++E+  S  +EIIL++WVY C + REL+KLV   +V+ K+LE +VKVGLWCVQD+PA
Sbjct: 706 CRRSIEVKVSTADEIILSSWVYGCLVARELDKLVGDEQVEFKSLERMVKVGLWCVQDDPA 765

Query: 247 LRP-MKCAVMML 257
           LRP MK  ++ML
Sbjct: 766 LRPSMKNVILML 777

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	257
TAIR|locus:2026155	829	AT1G34300 [Arabidopsis thalian	0.719	0.223	0.4	6.4e-31
TAIR|locus:2059103	828	AT2G19130 [Arabidopsis thalian	0.712	0.221	0.383	1.5e-28
TAIR|locus:2116525	821	SD2-5 "S-domain-2 5" [Arabidop	0.712	0.222	0.394	6.4e-28
TAIR|locus:2141862	853	AT4G18250 [Arabidopsis thalian	0.719	0.216	0.396	7e-28
TAIR|locus:2033577	425	AT1G70740 [Arabidopsis thalian	0.723	0.437	0.369	8.2e-28
TAIR|locus:2182603	872	AT5G35370 [Arabidopsis thalian	0.466	0.137	0.443	9.1e-28
TAIR|locus:2147635	452	AT5G20050 [Arabidopsis thalian	0.653	0.371	0.395	7.1e-27
TAIR|locus:2176737	665	PR5K "PR5-like receptor kinase	0.688	0.266	0.382	1.6e-26
TAIR|locus:2087263	363	AT3G24790 [Arabidopsis thalian	0.692	0.490	0.403	1.9e-26
TAIR|locus:2119936	669	AT4G29050 [Arabidopsis thalian	0.708	0.272	0.368	7.3e-26

TAIR|locus:2026155 AT1G34300 [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 6.4e-31, P = 6.4e-31
 Identities = 80/200 (40%), Positives = 118/200 (59%)

Query:    71 VRNGSLTDIIFCS-AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE 129
             +RNGSL + +F + + +   W  R  IAL  AKGI YLH+EC   I+HCDIKP+NIL+D+
Sbjct:   559 MRNGSLDNFLFTTDSAKFLTWEYRFNIALGTAKGITYLHEECRDCIVHCDIKPENILVDD 618

Query:   130 FWTAKILDFGLAKLPN-EDFVID----KRDKGYMAPECYKRTPISVKADVYGYGIVLLET 184
              + AK+ DFGLAKL N +D   +    +  +GY+APE     PI+ K+DVY YG+VLLE 
Sbjct:   619 NFAAKVSDFGLAKLLNPKDNRYNMSSVRGTRGYLAPEWLANLPITSKSDVYSYGMVLLEL 678

Query:   185 ICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTK------VDKKNLENLVKVGL 238
             +  ++N ++ + K      + W Y+ F  +   K +  T+      VD + +  +VK   
Sbjct:   679 VSGKRNFDV-SEKTNHKKFSIWAYEEF-EKGNTKAILDTRLSEDQTVDMEQVMRMVKTSF 736

Query:   239 WCVQDEPALRP-MKCAVMML 257
             WC+Q++P  RP M   V ML
Sbjct:   737 WCIQEQPLQRPTMGKVVQML 756

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA;ISS

GO:0048544 "recognition of pollen" evidence=IEA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

TAIR|locus:2059103 AT2G19130 [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 76/198 (38%), Positives = 108/198 (54%)

Query:    73 NGSLTDIIFCSAERNPY---WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE 129
             NGSL   +F +         W  R +IAL  A+G+ YLHDEC   I+HCDIKP+NIL+D 
Sbjct:   570 NGSLDSHLFLNQVEEKIVLGWKLRFQIALGTARGLAYLHDECRDCIIHCDIKPENILLDS 629

Query:   130 FWTAKILDFGLAKLPNEDF--VID--KRDKGYMAPECYKRTPISVKADVYGYGIVLLETI 185
              +  K+ DFGLAKL   DF  V+   +  +GY+APE      I+ KADVY YG++L E +
Sbjct:   630 QFCPKVADFGLAKLVGRDFSRVLTTMRGTRGYLAPEWISGVAITAKADVYSYGMMLFELV 689

Query:   186 CCRKNMEIDASKPEEI-ILTNWVYKCFI-NRELNKLV----RGTKVDKKNLENLVKVGLW 239
               R+N E   S+ E++    +W       + ++  LV     G  VD + +    KV  W
Sbjct:   690 SGRRNTE--QSENEKVRFFPSWAATILTKDGDIRSLVDPRLEGDAVDIEEVTRACKVACW 747

Query:   240 CVQDEPALRPMKCAVMML 257
             C+QDE + RP    V+ +
Sbjct:   748 CIQDEESHRPAMSQVVQI 765

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0048544 "recognition of pollen" evidence=IEA

TAIR|locus:2116525 SD2-5 "S-domain-2 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 77/195 (39%), Positives = 111/195 (56%)

Query:    74 GSLTDIIFCSAERNPY--WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 131
             GSL   IF   + +    W+ R  IAL  AKG+ YLH++C+  I+HCDIKP+NIL+D+ +
Sbjct:   571 GSLERWIFRKKDGDVLLDWDTRFNIALGTAKGLAYLHEDCDARIVHCDIKPENILLDDNF 630

Query:   132 TAKILDFGLAKLPNED----FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICC 187
              AK+ DFGLAKL   +    F   +  +GY+APE      IS K+DVY YG+VLLE I  
Sbjct:   631 NAKVSDFGLAKLMTREQSHVFTTMRGTRGYLAPEWITNYAISEKSDVYSYGMVLLELIGG 690

Query:   188 RKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT--KVD--KKNLENLVKVGLWCVQD 243
             RKN +  +   E+    ++ +K     +L  +V G    VD   + ++  +K  LWC+Q+
Sbjct:   691 RKNYD-PSETSEKCHFPSFAFKKMEEGKLMDIVDGKMKNVDVTDERVQRAMKTALWCIQE 749

Query:   244 EPALRP-MKCAVMML 257
             +   RP M   V ML
Sbjct:   750 DMQTRPSMSKVVQML 764

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA;ISS

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0046777 "protein autophosphorylation" evidence=RCA;IDA

TAIR|locus:2141862 AT4G18250 [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 7.0e-28, P = 7.0e-28
 Identities = 79/199 (39%), Positives = 113/199 (56%)

Query:    73 NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT 132
             NGSL   I  +      W     IA+ VA+G+ YLH+ C   I+H DIKPQNIL+DE   
Sbjct:   598 NGSLDKFISENMSTKIEWKTLYNIAVGVARGLEYLHNSCVSKIVHFDIKPQNILIDEDLC 657

Query:   133 AKILDFGLAKL--PNEDFV--IDKRDK-GYMAPECYKRT--PISVKADVYGYGIVLLETI 185
              KI DFGLAKL    E  +  +D R   GY+APE + +    +S K+DVY YG+V+LE I
Sbjct:   658 PKISDFGLAKLCKKKESIISMLDARGTVGYIAPEMFSKNYGGVSHKSDVYSYGMVVLEMI 717

Query:   186 CCRKNMEIDASKPEE--IILTNWVYKCFINRELNKLVRGTKVDKKNLENLVK----VGLW 239
                K  E++ S  ++  +   +WVY+    +E  +L+    ++++  E +VK    VGLW
Sbjct:   718 GATKREEVETSATDKSSMYFPDWVYEDLERKETMRLLEDHIIEEEEEEKIVKRMTLVGLW 777

Query:   240 CVQDEPALRP-MKCAVMML 257
             C+Q  P+ RP M+  V ML
Sbjct:   778 CIQTNPSDRPPMRKVVEML 796

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2033577 AT1G70740 [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 72/195 (36%), Positives = 108/195 (55%)

Query:    71 VRNGSLTDIIFCSAERNPY-WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE 129
             V N SL  ++F S  ++   W QR  I   +A+G+LYLH++    I+H DIK  NIL+DE
Sbjct:   138 VVNESLDKVLFKSNRKSEIDWKQRFEIITGIARGLLYLHEDAPNCIIHRDIKAGNILLDE 197

Query:   130 FWTAKILDFGLAKLPNEDFV-IDKR---DKGYMAPECYKRTPISVKADVYGYGIVLLETI 185
              W  KI DFG+A+L  ED   ++ R     GYMAPE      +SVKADV+ +G+++LE +
Sbjct:   198 KWVPKIADFGMARLYQEDVTHVNTRVAGTNGYMAPEYVMHGVLSVKADVFSFGVLVLELV 257

Query:   186 CCRKNMEIDASKPEEIILTNWVYKCFIN-RELNKLVR--GTKVDKKNLENLVKVGLWCVQ 242
               +KN       P++ +L  W +K +   R +  L +      D   ++  V++GL CVQ
Sbjct:   258 SGQKNSSFSMRHPDQTLL-EWAFKLYKKGRTMEILDQDIAASADPDQVKLCVQIGLLCVQ 316

Query:   243 DEPALRPMKCAVMML 257
              +P  RP    V +L
Sbjct:   317 GDPHQRPSMRRVSLL 331

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2182603 AT5G35370 [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 9.1e-28, Sum P(2) = 9.1e-28
 Identities = 55/124 (44%), Positives = 76/124 (61%)

Query:    71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
             + +GSL   +F        W +R  IAL  A+G+ YLH  C+  I+HCD+KP+NIL+ + 
Sbjct:   591 MNHGSLEKTLFSGNGPVLEWQERFDIALGTARGLAYLHSGCDQKIIHCDVKPENILLHDH 650

Query:   131 WTAKILDFGLAKLPNED----FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC 186
             +  KI DFGL+KL N++    F   +  +GY+APE      IS KADVY YG+VLLE + 
Sbjct:   651 FQPKISDFGLSKLLNQEESSLFTTMRGTRGYLAPEWITNAAISEKADVYSYGMVLLELVS 710

Query:   187 CRKN 190
              RKN
Sbjct:   711 GRKN 714

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA;ISS

TAIR|locus:2147635 AT5G20050 [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 7.1e-27, P = 7.1e-27
 Identities = 72/182 (39%), Positives = 108/182 (59%)

Query:    90 WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED-- 147
             W QR ++A+DVAK + YLH +C   ILH D+KP+NIL+DE + A + DFGL+KL   D  
Sbjct:   207 WEQRYQVAIDVAKALAYLHHDCRSKILHLDVKPENILLDENFRAVVTDFGLSKLIARDES 266

Query:   148 -FVIDKRD-KGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNM---EIDASKPEEI- 201
               + D R  +GY+APE      IS K+DVY YGIVLLE I  R+++   E+  +K +++ 
Sbjct:   267 RVLTDIRGTRGYLAPEWLLEHGISEKSDVYSYGIVLLEMIGGRRSISRVEVKETKKKKLE 326

Query:   202 ILTNWVYKCFINREL-----NKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM 255
                  V +    R++      +L+   +VD++ +  LV V LWC+Q++   RP M   + 
Sbjct:   327 YFPRIVNQKMRERKIMEIVDQRLIEVNEVDEEEVMKLVCVALWCIQEKSKKRPDMTMVIE 386

Query:   256 ML 257
             ML
Sbjct:   387 ML 388

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2176737 PR5K "PR5-like receptor kinase" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 1.6e-26, P = 1.6e-26
 Identities = 72/188 (38%), Positives = 105/188 (55%)

Query:    73 NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT 132
             NGSL   I  +      W +   +A+ +++G+ YLH+ C   I+H DIKPQNILMDE   
Sbjct:   409 NGSLDKYISANMSTKMEWERLYDVAVGISRGLEYLHNRCVTRIVHFDIKPQNILMDENLC 468

Query:   133 AKILDFGLAKL-PNEDFVID----KRDKGYMAPECYKRT--PISVKADVYGYGIVLLETI 185
              KI DFGLAKL  N++ +I     +   GY+APE + +    +S K+DVY YG+V+LE I
Sbjct:   469 PKISDFGLAKLCKNKESIISMLHMRGTFGYIAPEMFSKNFGAVSHKSDVYSYGMVVLEMI 528

Query:   186 CCR--KNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDK--KNLENLVKVGLWCV 241
               +  + +E   S    +    WVYK F   E+ ++   +  D+  K  + LV V LWC+
Sbjct:   529 GAKNIEKVEYSGSNNGSMYFPEWVYKDFEKGEITRIFGDSITDEEEKIAKKLVLVALWCI 588

Query:   242 QDEPALRP 249
             Q  P+ RP
Sbjct:   589 QMNPSDRP 596

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009691 "cytokinin biosynthetic process" evidence=RCA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0009620 "response to fungus" evidence=ISS

TAIR|locus:2087263 AT3G24790 [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 79/196 (40%), Positives = 114/196 (58%)

Query:    74 GSLTD-IIFCSAERNPY-WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 131
             GSL D ++     + P  WN R++IAL  AKGI YLHDE +PP+++ D+K  NIL+D  +
Sbjct:   127 GSLEDHLLDLEPGQKPLDWNTRIKIALGAAKGIEYLHDEADPPVIYRDLKSSNILLDPEY 186

Query:   132 TAKILDFGLAKL-PNEDFV-IDKR---DKGYMAPECYKRTP-ISVKADVYGYGIVLLETI 185
              AK+ DFGLAKL P  D + +  R     GY APE Y+RT  ++ K+DVY +G+VLLE I
Sbjct:   187 VAKLSDFGLAKLGPVGDTLHVSSRVMGTYGYCAPE-YQRTGYLTNKSDVYSFGVVLLELI 245

Query:   186 CCRKNMEIDASKPE-EIILTNWVYKCFINR----EL-NKLVRGTKVDKKNLENLVKVGLW 239
               R+   ID  +P  E  L  W    F +     +L + L+RG    +K+L   + V   
Sbjct:   246 SGRR--VIDTMRPSHEQNLVTWALPIFRDPTRYWQLADPLLRGD-YPEKSLNQAIAVAAM 302

Query:   240 CVQDEPALRPMKCAVM 255
             C+ +EP +RP+   V+
Sbjct:   303 CLHEEPTVRPLMSDVI 318

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2119936 AT4G29050 [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 7.3e-26, P = 7.3e-26
 Identities = 70/190 (36%), Positives = 105/190 (55%)

Query:    74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
             GSL   ++   E++  W+QR +I  DVA G+ YLH +    I+H DIKP N+L+D+    
Sbjct:   424 GSLDKFLYHQPEQSLDWSQRFKIIKDVASGLCYLHHQWVQVIIHRDIKPANVLLDDSMNG 483

Query:   134 KILDFGLAKLPNEDFVIDKRDK----GYMAPECYKRTPISVKADVYGYGIVLLETICCRK 189
             K+ DFGLAKL    F     +     GY++PE  +    S  +DV+ +GI++LE  C R+
Sbjct:   484 KLGDFGLAKLCEHGFDPQTSNVAGTFGYISPELSRTGKASTSSDVFAFGILMLEITCGRR 543

Query:   190 NMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLV----KVGLWCVQDEP 245
              +   AS P E++LT+WV  C+ +  L  +    K D K LE  V    K+GL+C     
Sbjct:   544 PVLPRASSPSEMVLTDWVLDCWEDDILQVVDERVKQDDKYLEEQVALVLKLGLFCSHPVA 603

Query:   246 ALRPMKCAVM 255
             A+RP   +V+
Sbjct:   604 AVRPSMSSVI 613

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.11.1	0.737
3rd Layer	2.7.11	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	257
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	7e-26
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	2e-21
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	1e-19
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	1e-15
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	1e-15
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	2e-15
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	4e-15
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	6e-15
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	3e-14
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-14
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	2e-13
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	2e-13
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	3e-13
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	2e-12
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	4e-12
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	9e-12
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	1e-11
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	2e-11
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	2e-11
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	3e-11
PHA03209	357	PHA03209, PHA03209, serine/threonine kinase US3; P	9e-11
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	1e-10
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	1e-10
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	1e-10
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	3e-10
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	4e-10
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	7e-10
PRK13184	932	PRK13184, pknD, serine/threonine-protein kinase; R	8e-10
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	1e-09
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	2e-09
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	2e-09
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	2e-09
cd05607	277	cd05607, STKc_GRK7, Catalytic domain of the Protei	3e-09
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	5e-09
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	5e-09
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	6e-09
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	7e-09
cd06616	288	cd06616, PKc_MKK4, Catalytic domain of the dual-sp	1e-08
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	1e-08
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	1e-08
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	2e-08
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	2e-08
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	2e-08
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	2e-08
cd05605	285	cd05605, STKc_GRK4_like, Catalytic domain of G pro	3e-08
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	3e-08
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	3e-08
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	8e-08
cd05632	285	cd05632, STKc_GRK5, Catalytic domain of the Protei	8e-08
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	1e-07
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	1e-07
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	1e-07
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	1e-07
cd06619	279	cd06619, PKc_MKK5, Catalytic domain of the dual-sp	1e-07
cd06649	331	cd06649, PKc_MEK2, Catalytic domain of the dual-sp	2e-07
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	2e-07
cd06650	333	cd06650, PKc_MEK1, Catalytic domain of the dual-sp	2e-07
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	2e-07
cd05594	325	cd05594, STKc_PKB_alpha, Catalytic domain of the P	3e-07
cd07850	353	cd07850, STKc_JNK, Catalytic domain of the Serine/	3e-07
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	3e-07
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	4e-07
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	4e-07
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	4e-07
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	5e-07
cd06622	286	cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of	5e-07
cd06618	296	cd06618, PKc_MKK7, Catalytic domain of the dual-sp	5e-07
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	5e-07
cd05630	285	cd05630, STKc_GRK6, Catalytic domain of the Protei	6e-07
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	7e-07
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	7e-07
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	8e-07
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	8e-07
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	1e-06
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	1e-06
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	1e-06
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	1e-06
cd08218	256	cd08218, STKc_Nek1, Catalytic domain of the Protei	1e-06
cd05061	288	cd05061, PTKc_InsR, Catalytic domain of the Protei	1e-06
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	1e-06
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	1e-06
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	1e-06
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	1e-06
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	1e-06
TIGR03903	1266	TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclas	1e-06
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	1e-06
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	2e-06
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	2e-06
cd05571	323	cd05571, STKc_PKB, Catalytic domain of the Protein	2e-06
cd07875	364	cd07875, STKc_JNK1, Catalytic domain of the Serine	2e-06
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	2e-06
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	2e-06
cd05601	330	cd05601, STKc_CRIK, Catalytic domain of the Protei	2e-06
cd05062	277	cd05062, PTKc_IGF-1R, Catalytic domain of the Prot	3e-06
cd06659	297	cd06659, STKc_PAK6, Catalytic domain of the Protei	3e-06
cd08223	257	cd08223, STKc_Nek4, Catalytic domain of the Protei	3e-06
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	3e-06
cd05106	374	cd05106, PTKc_CSF-1R, Catalytic domain of the Prot	3e-06
cd05115	257	cd05115, PTKc_Zap-70, Catalytic domain of the Prot	3e-06
cd05615	323	cd05615, STKc_cPKC_alpha, Catalytic domain of the	4e-06
PTZ00283	496	PTZ00283, PTZ00283, serine/threonine protein kinas	5e-06
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	5e-06
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	5e-06
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	6e-06
cd05593	328	cd05593, STKc_PKB_gamma, Catalytic domain of the P	6e-06
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	6e-06
cd05055	302	cd05055, PTKc_PDGFR, Catalytic domain of the Prote	7e-06
cd05603	321	cd05603, STKc_SGK2, Catalytic domain of the Protei	7e-06
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	8e-06
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	8e-06
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	8e-06
cd05054	337	cd05054, PTKc_VEGFR, Catalytic domain of the Prote	9e-06
cd06657	292	cd06657, STKc_PAK4, Catalytic domain of the Protei	9e-06
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	1e-05
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	1e-05
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	1e-05
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	1e-05
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	1e-05
cd05616	323	cd05616, STKc_cPKC_beta, Catalytic domain of the P	1e-05
cd05575	323	cd05575, STKc_SGK, Catalytic domain of the Protein	1e-05
cd07877	345	cd07877, STKc_p38alpha_MAPK14, Catalytic domain of	1e-05
cd07870	291	cd07870, STKc_PFTAIRE2, Catalytic domain of the Se	1e-05
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	2e-05
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	2e-05
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	2e-05
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	2e-05
cd07871	288	cd07871, STKc_PCTAIRE3, Catalytic domain of the Se	2e-05
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	2e-05
cd05104	375	cd05104, PTKc_Kit, Catalytic domain of the Protein	2e-05
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	2e-05
cd07876	359	cd07876, STKc_JNK2, Catalytic domain of the Serine	2e-05
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	2e-05
cd05631	285	cd05631, STKc_GRK4, Catalytic domain of the Protei	2e-05
cd05587	324	cd05587, STKc_cPKC, Catalytic domain of the Protei	2e-05
cd05595	323	cd05595, STKc_PKB_beta, Catalytic domain of the Pr	3e-05
cd07873	301	cd07873, STKc_PCTAIRE1, Catalytic domain of the Se	3e-05
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	3e-05
cd07869	303	cd07869, STKc_PFTAIRE1, Catalytic domain of the Se	3e-05
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	3e-05
PHA03212	391	PHA03212, PHA03212, serine/threonine kinase US3; P	3e-05
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	4e-05
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	4e-05
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	4e-05
cd05633	279	cd05633, STKc_GRK3, Catalytic domain of the Protei	5e-05
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	5e-05
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	5e-05
cd07874	355	cd07874, STKc_JNK3, Catalytic domain of the Serine	5e-05
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	6e-05
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	6e-05
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	6e-05
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	6e-05
cd07872	309	cd07872, STKc_PCTAIRE2, Catalytic domain of the Se	7e-05
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	9e-05
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	9e-05
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	9e-05
cd05606	278	cd05606, STKc_beta_ARK, Catalytic domain of the Pr	9e-05
cd07880	343	cd07880, STKc_p38gamma_MAPK12, Catalytic domain of	1e-04
cd05103	343	cd05103, PTKc_VEGFR2, Catalytic domain of the Prot	1e-04
PTZ00263	329	PTZ00263, PTZ00263, protein kinase A catalytic sub	1e-04
cd05036	277	cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro	1e-04
cd05100	334	cd05100, PTKc_FGFR3, Catalytic domain of the Prote	1e-04
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	1e-04
cd05108	316	cd05108, PTKc_EGFR, Catalytic domain of the Protei	1e-04
cd05116	257	cd05116, PTKc_Syk, Catalytic domain of the Protein	1e-04
cd05043	280	cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Rece	2e-04
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	2e-04
cd07844	291	cd07844, STKc_PCTAIRE_like, Catalytic domain of PC	2e-04
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	2e-04
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	2e-04
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	2e-04
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	2e-04
cd05109	279	cd05109, PTKc_HER2, Catalytic domain of the Protei	2e-04
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	2e-04
cd05608	280	cd05608, STKc_GRK1, Catalytic domain of the Protei	2e-04
cd07878	343	cd07878, STKc_p38beta_MAPK11, Catalytic domain of	2e-04
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	2e-04
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	2e-04
cd05602	325	cd05602, STKc_SGK1, Catalytic domain of the Protei	2e-04
PLN03225	566	PLN03225, PLN03225, Serine/threonine-protein kinas	2e-04
cd05098	307	cd05098, PTKc_FGFR1, Catalytic domain of the Prote	2e-04
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	3e-04
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	3e-04
cd06643	282	cd06643, STKc_SLK, Catalytic domain of the Protein	3e-04
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	3e-04
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	3e-04
cd06644	292	cd06644, STKc_STK10_LOK, Catalytic domain of the P	3e-04
PHA02988	283	PHA02988, PHA02988, hypothetical protein; Provisio	4e-04
cd05102	338	cd05102, PTKc_VEGFR3, Catalytic domain of the Prot	4e-04
cd07879	342	cd07879, STKc_p38delta_MAPK13, Catalytic domain of	4e-04
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	4e-04
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	4e-04
PTZ00267	478	PTZ00267, PTZ00267, NIMA-related protein kinase; P	5e-04
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	5e-04
cd05573	350	cd05573, STKc_ROCK_NDR_like, Catalytic domain of R	5e-04
cd08219	255	cd08219, STKc_Nek3, Catalytic domain of the Protei	5e-04
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	5e-04
cd05604	325	cd05604, STKc_SGK3, Catalytic domain of the Protei	6e-04
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	6e-04
cd05099	314	cd05099, PTKc_FGFR4, Catalytic domain of the Prote	6e-04
cd07865	310	cd07865, STKc_CDK9, Catalytic domain of the Serine	6e-04
cd07857	332	cd07857, STKc_MPK1, Catalytic domain of the Serine	6e-04
cd07858	337	cd07858, STKc_TEY_MAPK_plant, Catalytic domain of	6e-04
cd05101	304	cd05101, PTKc_FGFR2, Catalytic domain of the Prote	6e-04
cd05590	320	cd05590, STKc_nPKC_eta, Catalytic domain of the Pr	6e-04
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	7e-04
cd08222	260	cd08222, STKc_Nek11, Catalytic domain of the Prote	7e-04
cd05107	401	cd05107, PTKc_PDGFR_beta, Catalytic domain of the	8e-04
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	8e-04
cd05111	279	cd05111, PTK_HER3, Pseudokinase domain of the Prot	9e-04
cd06637	272	cd06637, STKc_TNIK, Catalytic domain of the Protei	0.001
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	0.001
cd05583	288	cd05583, STKc_MSK_N, N-terminal catalytic domain o	0.001
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	0.002
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	0.002
cd05105	400	cd05105, PTKc_PDGFR_alpha, Catalytic domain of the	0.002
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	0.002
cd07862	290	cd07862, STKc_CDK6, Catalytic domain of the Serine	0.002
cd05075	272	cd05075, PTKc_Axl, Catalytic domain of the Protein	0.002
cd06636	282	cd06636, STKc_MAP4K4_6, Catalytic domain of the Pr	0.002
cd07849	336	cd07849, STKc_ERK1_2_like, Catalytic domain of Ext	0.002
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	0.002
cd06635	317	cd06635, STKc_TAO1, Catalytic domain of the Protei	0.002
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	0.002
cd05609	305	cd05609, STKc_MAST, Catalytic domain of the Protei	0.003
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	0.003
cd05584	323	cd05584, STKc_p70S6K, Catalytic domain of the Prot	0.003
cd05074	273	cd05074, PTKc_Tyro3, Catalytic domain of the Prote	0.003
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	0.003
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	0.003
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	0.003
cd05042	269	cd05042, PTKc_Aatyk, Catalytic domain of the Prote	0.003
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	0.004
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	0.004
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	0.004
cd05591	321	cd05591, STKc_nPKC_epsilon, Catalytic domain of th	0.004

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score =  100 bits (251), Expect = 7e-26
 Identities = 42/116 (36%), Positives = 63/116 (54%), Gaps = 9/116 (7%)

Query: 73  NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE-FW 131
            GSL D++    E     ++ +RI L + +G+ YLH      I+H D+KP+NIL+D    
Sbjct: 75  GGSLKDLL-KENEGKLSEDEILRILLQILEGLEYLHSN---GIIHRDLKPENILLDSDNG 130

Query: 132 TAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYK-RTPISVKADVYGYGIVLLE 183
             K+ DFGL+KL   D  + K   G   YMAPE    +   S K+D++  G++L E
Sbjct: 131 KVKLADFGLSKLLTSDKSLLKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYE 186

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 89.6 bits (223), Expect = 2e-21
 Identities = 44/169 (26%), Positives = 68/169 (40%), Gaps = 26/169 (15%)

Query: 71  VRNGSLTDIIFCSAERNPY-WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE 129
              G L D +   +   P   ++  +IAL + +G+ YLH      I+H D+KP+NIL+DE
Sbjct: 80  CEGGDLFDYL---SRGGPLSEDEAKKIALQILRGLEYLHSN---GIIHRDLKPENILLDE 133

Query: 130 FWTAKILDFGLAKL------PNEDFVIDKRDKGYMAPE-CYKRTPISVKADVYGYGIVLL 182
               KI DFGLAK           FV       YMAPE          K DV+  G++L 
Sbjct: 134 NGVVKIADFGLAKKLLKSSSSLTTFVGTPW---YMAPEVLLGGNGYGPKVDVWSLGVILY 190

Query: 183 ETIC--------CRKNM-EIDASKPEEIILTNWVYKCFINRELNKLVRG 222
           E +            +  ++        +  +       + E   L++ 
Sbjct: 191 ELLTGKPPFSGENILDQLQLIRRILGPPLEFDEPKWSSGSEEAKDLIKK 239

Length = 260

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 84.5 bits (210), Expect = 1e-19
 Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 9/121 (7%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVR-IALDVAKGILYLHDECEPPILHCDIKPQNILMDE 129
              G L D++    +R        R     +   + YLH +    I+H D+KP+NIL+DE
Sbjct: 79  CEGGDLFDLL---KKRGRLSEDEARFYLRQILSALEYLHSKG---IVHRDLKPENILLDE 132

Query: 130 FWTAKILDFGLAKLPNEDFVIDKRD--KGYMAPECYKRTPISVKADVYGYGIVLLETICC 187
               K+ DFGLA+  +    +        YMAPE           D++  G++L E +  
Sbjct: 133 DGHVKLADFGLARQLDPGEKLTTFVGTPEYMAPEVLLGKGYGKAVDIWSLGVILYELLTG 192

Query: 188 R 188
           +
Sbjct: 193 K 193

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 74.1 bits (183), Expect = 1e-15
 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 14/117 (11%)

Query: 74  GSLTDIIFCSAERNPYWNQRV--RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 131
           GSL+ ++    ++     + V  +    + +G+ YLH      I+H DIK  NIL+D   
Sbjct: 86  GSLSSLL----KKFGKLPEPVIRKYTRQILEGLAYLHSNG---IVHRDIKGANILVDSDG 138

Query: 132 TAKILDFGLAKLPNEDFVIDKRD--KG---YMAPECYKRTPISVKADVYGYGIVLLE 183
             K+ DFG AK   +    +     +G   +MAPE  +       AD++  G  ++E
Sbjct: 139 VVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIE 195

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 73.7 bits (182), Expect = 1e-15
 Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 7/96 (7%)

Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-LPNEDFVI 150
             +  AL +A+G+ YL  +     +H D+  +N L+ E    KI DFGL++ L ++D+  
Sbjct: 103 DLLSFALQIARGMEYLESK---NFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYR 159

Query: 151 DKRDKG---YMAPECYKRTPISVKADVYGYGIVLLE 183
            +  K    +MAPE  K    + K+DV+ +G++L E
Sbjct: 160 KRGGKLPIRWMAPESLKEGKFTSKSDVWSFGVLLWE 195

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 73.4 bits (181), Expect = 2e-15
 Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 7/98 (7%)

Query: 90  WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-LPNEDF 148
            +  +  AL +A+G+ YL  +     +H D+  +N L+ E    KI DFGL++ L ++D+
Sbjct: 102 LSDLLSFALQIARGMEYLESK---NFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDY 158

Query: 149 VIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLE 183
              K  K    +MAPE  K    + K+DV+ +G++L E
Sbjct: 159 YKVKGGKLPIRWMAPESLKEGKFTSKSDVWSFGVLLWE 196

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 72.6 bits (179), Expect = 4e-15
 Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 8/99 (8%)

Query: 90  WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFV 149
               +  A+ +AKG+ YL        +H D+  +N L+ E    KI DFGL++   +D  
Sbjct: 104 LKDLLSFAIQIAKGMEYLA---SKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDY 160

Query: 150 IDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLE 183
             K+  G     +MAPE  K    + K+DV+ +G++L E
Sbjct: 161 YRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWE 199

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 71.8 bits (177), Expect = 6e-15
 Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 8/97 (8%)

Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
             +++AL +AKG+ YL  +     +H D+  +N L+ E    KI DFGL++   ED    
Sbjct: 103 DLLQMALQIAKGMEYLESK---NFVHRDLAARNCLVTENLVVKISDFGLSRDIYEDDYYR 159

Query: 152 KRDKGY-----MAPECYKRTPISVKADVYGYGIVLLE 183
           KR  G      MAPE  K    + K+DV+ +G++L E
Sbjct: 160 KRGGGKLPIKWMAPESLKDGKFTSKSDVWSFGVLLWE 196

Length = 258

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 70.5 bits (173), Expect = 3e-14
 Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 10/108 (9%)

Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---- 147
           + +  +  + KG+ YL  +     +H D+  +NIL++     KI DFGLAK+  ED    
Sbjct: 110 RLLLFSSQICKGMDYLGSQ---RYIHRDLAARNILVESEDLVKISDFGLAKVLPEDKDYY 166

Query: 148 FVIDKRDKG--YMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNME 192
           +V +  +    + APEC + +  S  +DV+ +G+ L E       +  
Sbjct: 167 YVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQS 214

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 70.6 bits (173), Expect = 8e-14
 Identities = 43/173 (24%), Positives = 81/173 (46%), Gaps = 11/173 (6%)

Query: 86  RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN 145
           RN  W +R +IA+ +AK + +LH  C P ++  ++ P+ I++D       L   L  L  
Sbjct: 775 RNLSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPH-LRLSLPGLLC 833

Query: 146 EDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTN 205
            D         Y+APE  +   I+ K+D+YG+G++L+E +  +   + +      I+   
Sbjct: 834 TDTK-CFISSAYVAPETRETKDITEKSDIYGFGLILIELLTGKSPADAEFGVHGSIV--E 890

Query: 206 WVYKCFINRELNKLV-----RGTKVDKKNLENLVKVGLWCVQDEPALRPMKCA 253
           W   C+ +  L+  +         V++  +  ++ + L C   +P  RP  CA
Sbjct: 891 WARYCYSDCHLDMWIDPSIRGDVSVNQNEIVEVMNLALHCTATDPTARP--CA 941

Length = 968

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 68.0 bits (167), Expect = 2e-13
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 15/95 (15%)

Query: 96  IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRD- 154
           +  ++ KG+ YLH      I+H DIK  NIL+      K++DFGL+       + D +  
Sbjct: 103 VCKELLKGLEYLHSN---GIIHRDIKAANILLTSDGEVKLIDFGLSA-----QLSDTKAR 154

Query: 155 ------KGYMAPECYKRTPISVKADVYGYGIVLLE 183
                   +MAPE     P   KAD++  GI  +E
Sbjct: 155 NTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIE 189

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 67.9 bits (167), Expect = 2e-13
 Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 6/84 (7%)

Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG---YMA 159
            + YLH      ILH DIKPQNI +      K+ DFG++K+ +    + K   G   Y++
Sbjct: 115 ALKYLHSR---KILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTVDLAKTVVGTPYYLS 171

Query: 160 PECYKRTPISVKADVYGYGIVLLE 183
           PE  +  P + K+D++  G VL E
Sbjct: 172 PELCQNKPYNYKSDIWSLGCVLYE 195

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 67.0 bits (164), Expect = 3e-13
 Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 6/114 (5%)

Query: 93  RVRI-ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
           +V+    ++   + YLH      I+H DIKP NIL+DE     I DF +A     D +  
Sbjct: 101 QVKFWICEIVLALEYLH---SKGIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDTLTT 157

Query: 152 KR--DKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIIL 203
                 GYMAPE   R   SV  D +  G+   E +  ++     +    + I 
Sbjct: 158 STSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRTIRDQIR 211

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 64.8 bits (158), Expect = 2e-12
 Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 27/172 (15%)

Query: 84  AERNPYWNQRV-RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK 142
            +R     Q + RI + + +G+  LH++    ILH D+K  NIL+      KI D G++K
Sbjct: 95  KKRKLIPEQEIWRIFIQLLRGLQALHEQ---KILHRDLKSANILLVANDLVKIGDLGISK 151

Query: 143 LPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPE 199
           +  ++    K   G   YMAPE +K  P S K+D++  G +L E        E  A   +
Sbjct: 152 VLKKNMA--KTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFE--ARSMQ 207

Query: 200 EIILTNWVYKCFINRELNKLVRG--TKVDKKNLENLVKVGLWCVQDEPALRP 249
           ++                K+ RG    +     ++L       +Q +P LRP
Sbjct: 208 DL--------------RYKVQRGKYPPIPPIYSQDLQNFIRSMLQVKPKLRP 245

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 64.8 bits (156), Expect = 4e-12
 Identities = 46/193 (23%), Positives = 71/193 (36%), Gaps = 19/193 (9%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVR-IALDVAKGILYLHDECEPPILHCDIKPQNILMDE 129
           V  GSL D++     + P        I   +   + YLH +    I+H DIKP+NIL+D 
Sbjct: 80  VDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKG---IIHRDIKPENILLDR 136

Query: 130 F-WTAKILDFGLAKL---PNEDFVIDKRDK------GYMAPECYKRT---PISVKADVYG 176
                K++DFGLAKL   P     I           GYMAPE          S  +D++ 
Sbjct: 137 DGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWS 196

Query: 177 YGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKV 236
            GI L E +      E + +          + +       + L       +   +    +
Sbjct: 197 LGITLYELLTGLPPFEGEKNSSATSQTLKIILELPTPSLASPLS--PSNPELISKAASDL 254

Query: 237 GLWCVQDEPALRP 249
               +  +P  R 
Sbjct: 255 LKKLLAKDPKNRL 267

Length = 384

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 63.1 bits (154), Expect = 9e-12
 Identities = 36/93 (38%), Positives = 57/93 (61%), Gaps = 9/93 (9%)

Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA-KLPNEDFVIDKR 153
           +IA+ V KG+ YLH++ +  I+H D+KP NIL++     K+ DFG++ +L N    + K 
Sbjct: 104 KIAVAVLKGLTYLHEKHK--IIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNS---LAKT 158

Query: 154 DKG---YMAPECYKRTPISVKADVYGYGIVLLE 183
             G   YMAPE  +    SVK+D++  G+ L+E
Sbjct: 159 FVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIE 191

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 62.8 bits (153), Expect = 1e-11
 Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 6/116 (5%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +  GSL   +     +       + +A  VA+G+ YL ++     +H D+  +NIL+ E 
Sbjct: 84  MEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQ---NSIHRDLAARNILVGED 140

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDK---GYMAPECYKRTPISVKADVYGYGIVLLE 183
              K+ DFGLA+L  ED  +    K    + APE       S K+DV+ +GI+L E
Sbjct: 141 LVCKVADFGLARLIKEDVYLSSDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYE 196

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 62.4 bits (152), Expect = 2e-11
 Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 10/93 (10%)

Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA-KLPNEDFVIDKR 153
           +IA  V KG+ YLH      I+H DIKP NIL+      K+ DFG++ +L N    +   
Sbjct: 109 KIAESVLKGLSYLHSR---KIIHRDIKPSNILLTRKGQVKLCDFGVSGELVNS---LAGT 162

Query: 154 DKG---YMAPECYKRTPISVKADVYGYGIVLLE 183
             G   YMAPE  +  P S+ +DV+  G+ LLE
Sbjct: 163 FTGTSFYMAPERIQGKPYSITSDVWSLGLTLLE 195

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 61.9 bits (150), Expect = 2e-11
 Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 3/92 (3%)

Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
           Q ++ +LDVA+G+ YL  +    ++H D+  +NIL+ E   AK+ DFGLA++ +      
Sbjct: 101 QLLQFSLDVAEGMEYLESK---KLVHRDLAARNILVSEDGVAKVSDFGLARVGSMGVDNS 157

Query: 152 KRDKGYMAPECYKRTPISVKADVYGYGIVLLE 183
           K    + APE  K    S K+DV+ YG++L E
Sbjct: 158 KLPVKWTAPEALKHKKFSSKSDVWSYGVLLWE 189

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 61.6 bits (150), Expect = 3e-11
 Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 27/163 (16%)

Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRD 154
           ++A ++A G+ YL        +H D+  +N ++ E  T KI DFG+ +   E     K  
Sbjct: 123 QMAAEIADGMAYLA---AKKFVHRDLAARNCMVAEDLTVKIGDFGMTRDIYETDYYRKGG 179

Query: 155 KG-----YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYK 209
           KG     +MAPE  K    + K+DV+ +G+VL E       M   A +P         Y+
Sbjct: 180 KGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWE-------MATLAEQP---------YQ 223

Query: 210 CFINRELNKLVRGTKVDKK--NLEN-LVKVGLWCVQDEPALRP 249
              N E+ K V          N  + L+++   C Q  P +RP
Sbjct: 224 GLSNEEVLKFVIDGGHLDLPENCPDKLLELMRMCWQYNPKMRP 266

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional

 Score = 60.7 bits (147), Expect = 9e-11
 Identities = 56/185 (30%), Positives = 83/185 (44%), Gaps = 22/185 (11%)

Query: 29  ADIEVLSVAMRGSKCTRIRGGLLLNVP----VRAKLTSVSGKIERPVRNGSLTDI-IFCS 83
            D  VL +  +G+  T I   LL NV     +R K T VSG I   V     +D+  + +
Sbjct: 91  PDPVVLKIGQKGT--TLIEAMLLQNVNHPSVIRMKDTLVSGAITCMVLPHYSSDLYTYLT 148

Query: 84  AERNPY-WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK 142
               P   +Q + I   + +G+ YLH +    I+H D+K +NI +++     I D G A+
Sbjct: 149 KRSRPLPIDQALIIEKQILEGLRYLHAQ---RIIHRDVKTENIFINDVDQVCIGDLGAAQ 205

Query: 143 LPNEDFVIDKRDKGYM------APECYKRTPISVKADVYGYGIVLLETICCRKNMEIDA- 195
            P    V+     G        APE   R   + KAD++  GIVL E +     +  D  
Sbjct: 206 FP----VVAPAFLGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTIFEDPP 261

Query: 196 SKPEE 200
           S PEE
Sbjct: 262 STPEE 266

Length = 357

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 59.8 bits (145), Expect = 1e-10
 Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 8/134 (5%)

Query: 73  NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT 132
           NG L  ++     R    +Q  R  + +  G+ +LH +    ILH DIK  N+ +D +  
Sbjct: 83  NGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSK---KILHRDIKSLNLFLDAYDN 139

Query: 133 AKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETICCRK 189
            KI D G+AKL +++        G   Y++PE  +  P + K+DV+  G+VL E  CC  
Sbjct: 140 VKIGDLGVAKLLSDNTNFANTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYE--CCTG 197

Query: 190 NMEIDASKPEEIIL 203
               DA+    +IL
Sbjct: 198 KHPFDANNQGALIL 211

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 59.7 bits (145), Expect = 1e-10
 Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 3/92 (3%)

Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
           Q++  ALDV +G+ YL    E   +H D+  +N+L+ E   AK+ DFGLAK  ++     
Sbjct: 103 QQLGFALDVCEGMEYLE---EKNFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQDSG 159

Query: 152 KRDKGYMAPECYKRTPISVKADVYGYGIVLLE 183
           K    + APE  +    S K+DV+ +GI+L E
Sbjct: 160 KLPVKWTAPEALREKKFSTKSDVWSFGILLWE 191

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 59.6 bits (145), Expect = 1e-10
 Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 12/94 (12%)

Query: 96  IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA-KLPNEDFVIDKRD 154
           I     KG+ YLH       +H DIK  NIL++E   AK+ DFG++ +L +    + KR+
Sbjct: 104 ILYQTLKGLEYLHSN---KKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDT---MAKRN 157

Query: 155 K--G---YMAPECYKRTPISVKADVYGYGIVLLE 183
              G   +MAPE  +    + KAD++  GI  +E
Sbjct: 158 TVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIE 191

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 58.4 bits (142), Expect = 3e-10
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 4/75 (5%)

Query: 115 ILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVK 171
           +LH D+KP NI +D     K+ DFGLAK+   D    K   G   YM+PE         K
Sbjct: 131 VLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSSFAKTYVGTPYYMSPEQLNHMSYDEK 190

Query: 172 ADVYGYGIVLLETIC 186
           +D++  G ++ E +C
Sbjct: 191 SDIWSLGCLIYE-LC 204

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 58.4 bits (142), Expect = 4e-10
 Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 23/121 (19%)

Query: 74  GSLTDIIFCSAERNPYWNQRV--RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 131
           GSL D++    ++     + V   IA  + KG+ YLH +    I+H DIKP N+L++   
Sbjct: 84  GSLADLL----KKVGKIPEPVLAYIARQILKGLDYLHTKRH--IIHRDIKPSNLLINSKG 137

Query: 132 TAKILDFGLAKLPNEDFVIDKRDKG---------YMAPECYKRTPISVKADVYGYGIVLL 182
             KI DFG++K      V++              YM+PE  +    S  AD++  G+ LL
Sbjct: 138 EVKIADFGISK------VLENTLDQCNTFVGTVTYMSPERIQGESYSYAADIWSLGLTLL 191

Query: 183 E 183
           E
Sbjct: 192 E 192

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 57.5 bits (139), Expect = 7e-10
 Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 24/155 (15%)

Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG--- 156
           +   + Y+H      ILH DIK  NI + +    K+ DFG++K+   ++ + +   G   
Sbjct: 110 IVSAVSYIHKA---GILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYSMAETVVGTPY 166

Query: 157 YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINREL 216
           YM+PE  +    + K+D++  G VL E +  ++    DA+ P  ++              
Sbjct: 167 YMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTF--DATNPLNLV-------------- 210

Query: 217 NKLVRG--TKVDKKNLENLVKVGLWCVQDEPALRP 249
            K+V+G  T V       L+ +    +Q +P  RP
Sbjct: 211 VKIVQGNYTPVVSVYSSELISLVHSLLQQDPEKRP 245

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|183880 PRK13184, pknD, serine/threonine-protein kinase; Reviewed

 Score = 58.6 bits (142), Expect = 8e-10
 Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 24/109 (22%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN--EDFV-- 149
           + I   +   I Y+H +    +LH D+KP NIL+  F    ILD+G A      E+ +  
Sbjct: 116 LSIFHKICATIEYVHSK---GVLHRDLKPDNILLGLFGEVVILDWGAAIFKKLEEEDLLD 172

Query: 150 IDKRDKG-----------------YMAPECYKRTPISVKADVYGYGIVL 181
           ID  ++                  YMAPE     P S   D+Y  G++L
Sbjct: 173 IDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVIL 221

Length = 932

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 56.8 bits (137), Expect = 1e-09
 Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 12/91 (13%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG----- 156
           KG+ YLH+     I+H DIK  NIL+D     KI DFG++K    + +  K +       
Sbjct: 117 KGLNYLHNR---GIIHRDIKGANILVDNKGGIKISDFGISKKLEANSLSTKTNGARPSLQ 173

Query: 157 ----YMAPECYKRTPISVKADVYGYGIVLLE 183
               +MAPE  K+T  + KAD++  G +++E
Sbjct: 174 GSVFWMAPEVVKQTSYTRKADIWSLGCLVVE 204

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 9/119 (7%)

Query: 72  RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 131
           + GSL + +   A R     Q + +A  VA G+ YL  +     +H D+  +N+L+ E  
Sbjct: 84  KYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQ---NYIHRDLAARNVLVGENN 140

Query: 132 TAKILDFGLAKLPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
             K+ DFGLA++  ED + + R+       + APE       S+K+DV+ +GI+L E +
Sbjct: 141 ICKVADFGLARVIKED-IYEAREGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIV 198

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 56.8 bits (138), Expect = 2e-09
 Identities = 42/119 (35%), Positives = 60/119 (50%), Gaps = 15/119 (12%)

Query: 74  GSLTDII-FCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT 132
           GSLTDII       N    Q   +  +V +G+ YLH +    ++H DIK  NIL+ +  +
Sbjct: 100 GSLTDIITQNFVRMNE--PQIAYVCREVLQGLEYLHSQ---NVIHRDIKSDNILLSKDGS 154

Query: 133 AKILDFGL-AKLPNEDFVIDKRDK--G---YMAPECYKRTPISVKADVYGYGIVLLETI 185
            K+ DFG  A+L  E     KR+   G   +MAPE  KR     K D++  GI+ +E  
Sbjct: 155 VKLADFGFAAQLTKE---KSKRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMA 210

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 9/93 (9%)

Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA-KLPN---EDFVI 150
           +IA+ V +G+ YL++     I+H DIKP NIL++     K+ DFG++ +L N   + FV 
Sbjct: 107 KIAVAVVEGLTYLYNVHR--IMHRDIKPSNILVNSRGQIKLCDFGVSGELINSIADTFV- 163

Query: 151 DKRDKGYMAPECYKRTPISVKADVYGYGIVLLE 183
                 YM+PE  +    +VK+DV+  GI ++E
Sbjct: 164 --GTSTYMSPERIQGGKYTVKSDVWSLGISIIE 194

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

 Score = 55.7 bits (134), Expect = 3e-09
 Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 8/131 (6%)

Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           G L   I+   ER     + +  +  +  GIL+LH      I++ D+KP+N+L+D+    
Sbjct: 78  GDLKYHIYNVGERGLEMERVIHYSAQITCGILHLH---SMDIVYRDMKPENVLLDDQGNC 134

Query: 134 KILDFGLAKLPNEDFVIDKR--DKGYMAPECYKRTPISVKADVYGYGIVLLETICCR--- 188
           ++ D GLA    +   I +R    GYMAPE  K  P S   D +  G  + E +  R   
Sbjct: 135 RLSDLGLAVELKDGKTITQRAGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPF 194

Query: 189 KNMEIDASKPE 199
           K+ +   +K E
Sbjct: 195 KDHKEKVAKEE 205

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation of opsin light receptors. GRK7 is located in retinal cone outer segments and plays an important role in regulating photoresponse of the cones. Length = 277

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score = 55.5 bits (134), Expect = 5e-09
 Identities = 38/115 (33%), Positives = 65/115 (56%), Gaps = 13/115 (11%)

Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           GSL D +   A R P  N   +I++ V +G+ YL ++ +  I+H D+KP NIL++     
Sbjct: 84  GSL-DQVLKKAGRIPE-NILGKISIAVLRGLTYLREKHK--IMHRDVKPSNILVNSRGEI 139

Query: 134 KILDFGLA-----KLPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLE 183
           K+ DFG++      + N  FV     + YM+PE  + T  +V++D++  G+ L+E
Sbjct: 140 KLCDFGVSGQLIDSMANS-FV---GTRSYMSPERLQGTHYTVQSDIWSLGLSLVE 190

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 54.9 bits (133), Expect = 5e-09
 Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 6/87 (6%)

Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG--- 156
           V +G+ YLH++    ++H DIK  NIL  +    K+ DFG+A   N+    D    G   
Sbjct: 108 VLQGLAYLHEQ---GVIHRDIKAANILTTKDGVVKLADFGVATKLNDVSKDDASVVGTPY 164

Query: 157 YMAPECYKRTPISVKADVYGYGIVLLE 183
           +MAPE  + +  S  +D++  G  ++E
Sbjct: 165 WMAPEVIEMSGASTASDIWSLGCTVIE 191

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 54.8 bits (133), Expect = 6e-09
 Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 20/122 (16%)

Query: 89  YWNQRVRIALDVAK--------GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGL 140
           + ++  R + + A+         + YLH      I++ D+KP+NIL+D     K+ DFGL
Sbjct: 83  HLSKEGRFSEERARFYAAEIVLALEYLHSL---GIIYRDLKPENILLDADGHIKLTDFGL 139

Query: 141 AK-LPNEDFVIDK--RDKGYMAPECYKRTPISVKADVYGYGIVLLETIC------CRKNM 191
           AK L +E    +       Y+APE           D +  G++L E +            
Sbjct: 140 AKELSSEGSRTNTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAEDRK 199

Query: 192 EI 193
           EI
Sbjct: 200 EI 201

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 54.9 bits (133), Expect = 7e-09
 Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 26/116 (22%)

Query: 96  IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKL------------ 143
            A ++   + YLH +    I+H D+KP+NIL+D+    KI DFG AK+            
Sbjct: 107 YAAEILLALEYLHSK---GIIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPESNKG 163

Query: 144 -PNEDFVIDKRDKG----------YMAPECYKRTPISVKADVYGYGIVLLETICCR 188
                    ++++           Y++PE     P    +D++  G ++ + +  +
Sbjct: 164 DATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGK 219

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 37/95 (38%), Positives = 52/95 (54%), Gaps = 11/95 (11%)

Query: 96  IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA-KLPNEDFVIDKRD 154
           IA+   K + YL +E +  I+H D+KP NIL+D     K+ DFG++ +L   D +   RD
Sbjct: 112 IAVATVKALNYLKEELK--IIHRDVKPSNILLDRNGNIKLCDFGISGQL--VDSIAKTRD 167

Query: 155 KG---YMAPE---CYKRTPISVKADVYGYGIVLLE 183
            G   YMAPE      R    V++DV+  GI L E
Sbjct: 168 AGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYE 202

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific threonine and tyrosine residues. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. Their activation is associated with the induction of cell death. Mice deficient in MKK4 die during embryogenesis and display anemia, severe liver hemorrhage, and abnormal hepatogenesis. MKK4 may also play roles in the immune system and in cardiac hypertrophy. It plays a major role in cancer as a tumor and metastasis suppressor. Under certain conditions, MKK4 is pro-oncogenic. Length = 288

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 20/101 (19%)

Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFG--------LAKLPNE 146
           +IA+ + K + YLH +    ++H D+KP N+L++     K+ DFG        +AK    
Sbjct: 107 KIAVSIVKALEYLHSKLS--VIHRDVKPSNVLINRNGQVKLCDFGISGYLVDSVAK---- 160

Query: 147 DFVIDKRDKGYMAPE----CYKRTPISVKADVYGYGIVLLE 183
              ID   K YMAPE       +    VK+DV+  GI ++E
Sbjct: 161 --TIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIE 199

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 53.7 bits (129), Expect = 1e-08
 Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 10/98 (10%)

Query: 90  WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFV 149
           WN  V++ L     + YLH E    I+H D+ P NI++ E     I DFGLAK    +  
Sbjct: 116 WNIFVQMVL----ALRYLHKEKR--IVHRDLTPNNIMLGEDDKVTITDFGLAKQKQPESK 169

Query: 150 IDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLET 184
           +     G   Y  PE  K  P   KADV+ +G +L + 
Sbjct: 170 L-TSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQM 206

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 8/86 (9%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG---YM 158
            G+ YLHD      +H DIK  NIL+D     K+ DFG+AK   E F   K  KG   +M
Sbjct: 113 LGLEYLHDR---NTVHRDIKGANILVDTNGVVKLADFGMAKQVVE-FSFAKSFKGSPYWM 168

Query: 159 APECYKRT-PISVKADVYGYGIVLLE 183
           APE   +     + AD++  G  +LE
Sbjct: 169 APEVIAQQGGYGLAADIWSLGCTVLE 194

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 13/101 (12%)

Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-LPNEDFVIDKR 153
              L + +G+ YLH      I+H DIKP NI +D     K+ DFG A  L N    + + 
Sbjct: 103 VYTLQLLEGLAYLH---SHGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEE 159

Query: 154 DKG------YMAPECYKRTPISVK---ADVYGYGIVLLETI 185
            +       YMAPE             AD++  G V+LE  
Sbjct: 160 VQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMA 200

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 53.7 bits (129), Expect = 2e-08
 Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 13/77 (16%)

Query: 115 ILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG--------YMAPECYKRT 166
           I++ D+KP+NIL+DE    K+ DFGL+K       ID   K         YMAPE   R 
Sbjct: 119 IIYRDLKPENILLDEEGHIKLTDFGLSKES-----IDHEKKAYSFCGTVEYMAPEVVNRR 173

Query: 167 PISVKADVYGYGIVLLE 183
             +  AD + +G+++ E
Sbjct: 174 GHTQSADWWSFGVLMFE 190

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 53.3 bits (128), Expect = 2e-08
 Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 7/117 (5%)

Query: 73  NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT 132
           NGSL D +          N+ + +A  +A+G+ ++        +H D++  NIL+ E   
Sbjct: 84  NGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIE---RKNYIHRDLRAANILVSETLC 140

Query: 133 AKILDFGLAKL-PNEDFVIDKRDK---GYMAPECYKRTPISVKADVYGYGIVLLETI 185
            KI DFGLA+L  + ++   +  K    + APE       ++K+DV+ +GI+L E +
Sbjct: 141 CKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIV 197

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

 Score = 53.3 bits (128), Expect = 3e-08
 Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 5/91 (5%)

Query: 97  ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA-KLPNEDFVIDKRDK 155
           A ++  G+  LH E    I++ D+KP+NIL+D++   +I D GLA ++P  + +  +   
Sbjct: 108 AAEITCGLEDLHRE---RIVYRDLKPENILLDDYGHIRISDLGLAVEIPEGETIRGRVGT 164

Query: 156 -GYMAPECYKRTPISVKADVYGYGIVLLETI 185
            GYMAPE  K    +   D +G G ++ E I
Sbjct: 165 VGYMAPEVVKNERYTFSPDWWGLGCLIYEMI 195

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (RH) domain and a catalytic domain, but lack a G protein betagamma-subunit binding domain. They are localized to the plasma membrane through post-translational lipid modification or direct binding to PIP2. Length = 285

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 52.9 bits (127), Expect = 3e-08
 Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 26/116 (22%)

Query: 83  SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK 142
           S   NP     +   L VAKG+ YL        +H D+  +N ++DE +T K+ DFGLA+
Sbjct: 90  SETHNPTVKDLIGFGLQVAKGMEYL---ASKKFVHRDLAARNCMLDESFTVKVADFGLAR 146

Query: 143 LPNEDFVIDKRDKGY---------------MAPECYKRTPISVKADVYGYGIVLLE 183
                   D  DK Y               MA E  +    + K+DV+ +G++L E
Sbjct: 147 --------DIYDKEYYSVHNHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWE 194

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 17/123 (13%)

Query: 72  RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 131
             GSL D +     +     Q V +A  +A+G+ YL        +H D+  +NIL+ E  
Sbjct: 84  SKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLE---SRNYIHRDLAARNILVGENL 140

Query: 132 TAKILDFGLAKLPNED---------FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLL 182
             KI DFGLA+L  +D         F I      + APE       ++K+DV+ +GI+L 
Sbjct: 141 VCKIADFGLARLIEDDEYTAREGAKFPIK-----WTAPEAANYGRFTIKSDVWSFGILLT 195

Query: 183 ETI 185
           E +
Sbjct: 196 EIV 198

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 51.7 bits (124), Expect = 8e-08
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 9/115 (7%)

Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           G+LTDI+  +        Q   + L V K + +LH +    ++H DIK  +IL+      
Sbjct: 101 GALTDIVTHTRMNEE---QIATVCLAVLKALSFLHAQ---GVIHRDIKSDSILLTSDGRV 154

Query: 134 KILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETI 185
           K+ DFG     +++    K   G   +MAPE   R P   + D++  GI+++E +
Sbjct: 155 KLSDFGFCAQVSKEVPRRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMV 209

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

 Score = 51.9 bits (124), Expect = 8e-08
 Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 5/91 (5%)

Query: 97  ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA-KLPNEDFVIDKRDK 155
           A ++  G+  LH E     ++ D+KP+NIL+D++   +I D GLA K+P  + +  +   
Sbjct: 108 AAEILCGLEDLHRE---NTVYRDLKPENILLDDYGHIRISDLGLAVKIPEGESIRGRVGT 164

Query: 156 -GYMAPECYKRTPISVKADVYGYGIVLLETI 185
            GYMAPE       ++  D +G G ++ E I
Sbjct: 165 VGYMAPEVLNNQRYTLSPDYWGLGCLIYEMI 195

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids via its C-terminus. GRK5 deficiency is associated with early Alzheimer's disease in humans and mouse models. GRK5 also plays a crucial role in the pathogenesis of sporadic Parkinson's disease. It participates in the regulation and desensitization of PDGFRbeta, a receptor tyrosine kinase involved in a variety of downstream cellular effects including cell growth, chemotaxis, apoptosis, and angiogenesis. GRK5 also regulates Toll-like receptor 4, which is involved in innate and adaptive immunity. Length = 285

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 51.1 bits (122), Expect = 1e-07
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR 153
           ++ +LDV + + YL        +H D+  +N+L+ E   AK+ DFGL K  +      K 
Sbjct: 105 LKFSLDVCEAMEYLEAN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKL 161

Query: 154 DKGYMAPECYKRTPISVKADVYGYGIVLLE 183
              + APE  +    S K+DV+ +GI+L E
Sbjct: 162 PVKWTAPEALREKKFSTKSDVWSFGILLWE 191

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 51.3 bits (124), Expect = 1e-07
 Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 3/41 (7%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK 142
           +G+ Y H      ILH D+KPQNIL++     K+ DFGLA+
Sbjct: 109 RGLAYCHSHR---ILHRDLKPQNILINRDGVLKLADFGLAR 146

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 17/95 (17%)

Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGL-AKLPNEDFVIDKRDK--- 155
           + + + +LH      ++H D+K  NIL+      K+ DFG+ AK  +      KRD    
Sbjct: 112 MLEALNFLHSH---KVIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTL---QKRDTFIG 165

Query: 156 --GYMAPE---C--YKRTPISVKADVYGYGIVLLE 183
              +MAPE   C  +K  P   KAD++  GI L+E
Sbjct: 166 TPYWMAPEVVACETFKDNPYDYKADIWSLGITLIE 200

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 34/152 (22%)

Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE--DFVIDKRDKG- 156
           V +G+ YLH +    ILH D+K  N+L+D     KI DFG++K  ++  D   +   +G 
Sbjct: 117 VLEGLAYLHSK---GILHRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQNMSMQGS 173

Query: 157 --YMAPECY--KRTPISVKADVYGYGIVLLETICCRK---NME-------IDASK----- 197
             +MAPE         S K D++  G V+LE    R+   + E       +   +     
Sbjct: 174 VFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEEAIAAMFKLGNKRSAPPI 233

Query: 198 PEEIILT------NWVYKCFINRELNKLVRGT 223
           P ++ +       +++  CF    +N   R T
Sbjct: 234 PPDVSMNLSPVALDFLNACF---TINPDNRPT 262

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 4/90 (4%)

Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA-KLPNEDFVIDKR 153
           RIA+ V KG+ YL       ILH D+KP N+L++     K+ DFG++ +L N        
Sbjct: 99  RIAVAVVKGLTYLWSL---KILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNSIAKTYVG 155

Query: 154 DKGYMAPECYKRTPISVKADVYGYGIVLLE 183
              YMAPE        + +DV+  GI  +E
Sbjct: 156 TNAYMAPERISGEQYGIHSDVWSLGISFME 185

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that phosphorylates its downstream target, extracellular signal-regulated kinase 5 (ERK5), on specific threonine and tyrosine residues. MKK5 is activated by MEKK2 and MEKK3 in response to mitogenic and stress stimuli. The ERK5 cascade promotes cell proliferation, differentiation, neuronal survival, and neuroprotection. This cascade plays an essential role in heart development. Mice deficient in either ERK5 or MKK5 die around embryonic day 10 due to cardiovascular defects including underdevelopment of the myocardium. In addition, MKK5 is associated with metastasis and unfavorable prognosis in prostate cancer. Length = 279

>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

 Score = 51.2 bits (122), Expect = 2e-07
 Identities = 30/94 (31%), Positives = 56/94 (59%), Gaps = 11/94 (11%)

Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA-----KLPNEDFV 149
           ++++ V +G+ YL ++ +  I+H D+KP NIL++     K+ DFG++      + N  FV
Sbjct: 107 KVSIAVLRGLAYLREKHQ--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANS-FV 163

Query: 150 IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLE 183
                + YM+PE  + T  SV++D++  G+ L+E
Sbjct: 164 ---GTRSYMSPERLQGTHYSVQSDIWSMGLSLVE 194

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 331

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 50.4 bits (120), Expect = 2e-07
 Identities = 31/99 (31%), Positives = 56/99 (56%), Gaps = 11/99 (11%)

Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
           Q ++ A DVA G+ YL ++     +H D+  +N+L+ E   +KI DFGL++   E+  + 
Sbjct: 120 QLLQFASDVATGMQYLSEK---QFIHRDLAARNVLVGENLASKIADFGLSR--GEEVYV- 173

Query: 152 KRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
           K+  G     +MA E    +  + K+DV+ +G++L E +
Sbjct: 174 KKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIV 212

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

 Score = 50.8 bits (121), Expect = 2e-07
 Identities = 34/114 (29%), Positives = 63/114 (55%), Gaps = 11/114 (9%)

Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA-----KLPNEDFV 149
           ++++ V KG+ YL ++ +  I+H D+KP NIL++     K+ DFG++      + N  FV
Sbjct: 107 KVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANS-FV 163

Query: 150 IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIIL 203
                + YM+PE  + T  SV++D++  G+ L+E    R  +    +K  E++ 
Sbjct: 164 ---GTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPPPDAKELELMF 214

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. MEK1 also plays a role in cell cycle control. Length = 333

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 14/85 (16%)

Query: 85  ERNPYWNQRVR-IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKL 143
           E  P    +V+     + KG+ Y+H      I+H D+KP N+L+      KI DFGLA+L
Sbjct: 92  EERPLPEAQVKSYMRMLLKGVAYMHAN---GIMHRDLKPANLLISADGVLKIADFGLARL 148

Query: 144 PNEDFVIDKRD-------KGYMAPE 161
            +E+   + R        + Y APE
Sbjct: 149 FSEE---EPRLYSHQVATRWYRAPE 170

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

 Score = 50.4 bits (120), Expect = 3e-07
 Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 11/109 (10%)

Query: 83  SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK 142
           S +R  ++   +  ALD      YLH E    +++ D+K +N+++D+    KI DFGL K
Sbjct: 93  SEDRARFYGAEIVSALD------YLHSEKN--VVYRDLKLENLMLDKDGHIKITDFGLCK 144

Query: 143 LPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETICCR 188
              +D    K   G   Y+APE  +        D +G G+V+ E +C R
Sbjct: 145 EGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGR 193

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficient in PKB-alpha exhibit perinatal morbidity, growth retardation, reduction in body weight accompanied by reduced sizes of multiple organs, and enhanced apoptosis in some cell types. PKB-alpha activity has been reported to be frequently elevated in breast and prostate cancers. In some cancer cells, PKB-alpha may act as a suppressor of metastasis. Length = 325

>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAP 160
           GI +LH      I+H D+KP NI++    T KILDFGLA+     F++      + Y AP
Sbjct: 130 GIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAP 186

Query: 161 ECYKRTPISVKADVYGYGIVLLETIC 186
           E           D++  G ++ E I 
Sbjct: 187 EVILGMGYKENVDIWSVGCIMGEMIR 212

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3) that are alternatively spliced to produce at least 10 isoforms. JNKs are specifically activated by the MAPK kinases MKK4 and MKK7, which are in turn activated by upstream MAPK kinase kinases as a result of different stimuli including stresses such as ultraviolet (UV) irradiation, hyperosmolarity, heat shock, or cytokines. JNKs activate a large number of different substrates based on specific stimulus, cell type, and cellular condition, and may be implicated in seemingly contradictory functions. Length = 353

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score = 50.1 bits (119), Expect = 3e-07
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 6/95 (6%)

Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
           Q   I  ++ KG+ YLH E +   +H DIK  N+L+ E    K+ DFG+A    +  +  
Sbjct: 102 QIATILREILKGLDYLHSEKK---IHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKR 158

Query: 152 KRDKG---YMAPECYKRTPISVKADVYGYGIVLLE 183
               G   +MAPE  K++    KAD++  GI  +E
Sbjct: 159 NTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIE 193

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 49.7 bits (118), Expect = 4e-07
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 12/91 (13%)

Query: 99  DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA------KLPNEDFVIDK 152
           ++ KG+ YLH E +   +H DIK  N+L+ E    K+ DFG+A      ++    FV   
Sbjct: 109 EILKGLDYLHSEKK---IHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFV--- 162

Query: 153 RDKGYMAPECYKRTPISVKADVYGYGIVLLE 183
               +MAPE  +++    KAD++  GI  +E
Sbjct: 163 GTPFWMAPEVIQQSAYDSKADIWSLGITAIE 193

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score = 49.5 bits (119), Expect = 4e-07
 Identities = 42/151 (27%), Positives = 62/151 (41%), Gaps = 28/151 (18%)

Query: 106 YLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK--------GY 157
           YLH+     I++ D+KP+N+L+D     K++DFG AK       +    K         Y
Sbjct: 108 YLHNR---GIIYRDLKPENLLLDSNGYVKLVDFGFAK------KLKSGQKTWTFCGTPEY 158

Query: 158 MAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELN 217
           +APE           D +  GI+L E +  R     D   P EI      Y   I +   
Sbjct: 159 VAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGEDDEDPMEI------YN-DILKGNG 211

Query: 218 KLVRGTKVDKKNLENLVKVGLWCVQDEPALR 248
           KL     +DK   ++L+K  L   +  P  R
Sbjct: 212 KLEFPNYIDKAA-KDLIKQLL---RRNPEER 238

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 49.6 bits (118), Expect = 4e-07
 Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 11/99 (11%)

Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
           Q +  A DVA+G+ YL    +   +H D+  +NIL+ E + AKI DFGL++   E +V  
Sbjct: 125 QLLHFAADVARGMDYL---SQKQFIHRDLAARNILVGENYVAKIADFGLSR-GQEVYV-- 178

Query: 152 KRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
           K+  G     +MA E    +  +  +DV+ YG++L E +
Sbjct: 179 KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIV 217

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 12/94 (12%)

Query: 96  IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA-KLPNEDFVIDKRD 154
           I  +V  G+ YLH+E +   +H DIK  NIL+ E    K+ DFG++ +L      + KR+
Sbjct: 103 ILREVLLGLEYLHEEGK---IHRDIKAANILLSEEGDVKLADFGVSGQL---TSTMSKRN 156

Query: 155 K--G---YMAPECYKRTPISVKADVYGYGIVLLE 183
              G   +MAPE  K++    KAD++  GI  +E
Sbjct: 157 TFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIE 190

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

 Score = 49.5 bits (118), Expect = 5e-07
 Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 13/102 (12%)

Query: 91  NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVI 150
           +   RI   V KG+ +L +E    I+H D+KP N+L++     K+ DFG++   N    +
Sbjct: 102 DVLRRITYAVVKGLKFLKEEHN--IIHRDVKPTNVLVNGNGQVKLCDFGVSG--NLVASL 157

Query: 151 DKRDKG---YMAPECYK------RTPISVKADVYGYGIVLLE 183
            K + G   YMAPE  K          +V++DV+  G+ +LE
Sbjct: 158 AKTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILE 199

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Polymyxin B resistance protein 2 (PBS2) from Saccharomyces cerevisiae, Wis1 from Schizosaccharomyces pombe, and related proteins. PBS2 and Wis1 are components of stress-activated MAPK cascades in budding and fission yeast, respectively. PBS2 is the specific activator of the MAPK Hog1, which plays a central role in the response of budding yeast to stress including exposure to arsenite and hyperosmotic environments. Wis1 phosphorylates and activates the MAPK Sty1 (also called Spc1 or Phh1), which stimulates a transcriptional response to a wide range of cellular insults through the bZip transcription factors Atf1, Pcr1, and Pap1. Length = 286

>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 24/103 (23%)

Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRD 154
           ++ + + K + YL ++    ++H D+KP NIL+D     K+ DFG++       ++D + 
Sbjct: 118 KMTVAIVKALHYLKEKHG--VIHRDVKPSNILLDASGNVKLCDFGIS-----GRLVDSKA 170

Query: 155 K-------GYMAPECYKRTPIS-------VKADVYGYGIVLLE 183
           K        YMAPE   R           ++ADV+  GI L+E
Sbjct: 171 KTRSAGCAAYMAPE---RIDPPDPNPKYDIRADVWSLGISLVE 210

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and tyrosine residues. Although MKK7 is capable of dual phosphorylation, it prefers to phosphorylate the threonine residue of JNK. Thus, optimal activation of JNK requires both MKK4 (not included in this subfamily) and MKK7. MKK7 is primarily activated by cytokines. MKK7 is essential for liver formation during embryogenesis. It plays roles in G2/M cell cycle arrest and cell growth. In addition, it is involved in the control of programmed cell death, which is crucial in oncogenesis, cancer chemoresistance, and antagonism to TNFalpha-induced killing, through its inhibition by Gadd45beta and the subsequent suppression of the JNK cascade. Length = 296

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score = 49.3 bits (117), Expect = 5e-07
 Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 9/118 (7%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +  G+LTDI+  +        Q   + L V + + YLH++    ++H DIK  +IL+   
Sbjct: 101 LEGGALTDIVTHTRMNE---EQIATVCLSVLRALSYLHNQ---GVIHRDIKSDSILLTSD 154

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETI 185
              K+ DFG     +++    K   G   +MAPE   R P   + D++  GI+++E I
Sbjct: 155 GRIKLSDFGFCAQVSKEVPKRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMI 212

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

 Score = 49.2 bits (117), Expect = 6e-07
 Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 5/91 (5%)

Query: 97  ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--D 154
           A ++  G+  LH E    I++ D+KP+NIL+D+    +I D GLA    E   I  R   
Sbjct: 108 AAEICCGLEDLHQE---RIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKGRVGT 164

Query: 155 KGYMAPECYKRTPISVKADVYGYGIVLLETI 185
            GYMAPE  K    +   D +  G +L E I
Sbjct: 165 VGYMAPEVVKNERYTFSPDWWALGCLLYEMI 195

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 48.9 bits (116), Expect = 7e-07
 Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 6/91 (6%)

Query: 96  IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK 155
           I  ++ KG+ YLH E +   +H DIK  N+L+ E    K+ DFG+A    +  +      
Sbjct: 106 ILREILKGLDYLHSERK---IHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFV 162

Query: 156 G---YMAPECYKRTPISVKADVYGYGIVLLE 183
           G   +MAPE  K++    KAD++  GI  +E
Sbjct: 163 GTPFWMAPEVIKQSAYDFKADIWSLGITAIE 193

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score = 48.8 bits (116), Expect = 7e-07
 Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 12/101 (11%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF-WTAKILDFGLAKLPNEDFVIDK 152
           V+I+L    G+ ++HD     ILH DIK QNI + +    AK+ DFG+A+  N+   +  
Sbjct: 108 VQISL----GLKHIHDR---KILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSMELAY 160

Query: 153 RDKG---YMAPECYKRTPISVKADVYGYGIVLLETICCRKN 190
              G   Y++PE  +  P + K D++  G VL E +C  K+
Sbjct: 161 TCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYE-LCTLKH 200

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score = 48.6 bits (116), Expect = 8e-07
 Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 8/87 (9%)

Query: 99  DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK--LPNEDFVIDKRDKG 156
           +V  G+  LH      I+H DIKP+N+L+D+    K+ DFGL++  L N+ FV       
Sbjct: 105 EVVLGVEDLHQR---GIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLENKKFV---GTPD 158

Query: 157 YMAPECYKRTPISVKADVYGYGIVLLE 183
           Y+APE          +D +  G V+ E
Sbjct: 159 YLAPETILGVGDDKMSDWWSLGCVIFE 185

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 48.5 bits (115), Expect = 8e-07
 Identities = 41/183 (22%), Positives = 77/183 (42%), Gaps = 20/183 (10%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +  GSL D +           + +  +  +A+G+ ++        +H D++  NIL+   
Sbjct: 82  MAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSAS 138

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKGY----MAPECYKRTPISVKADVYGYGIVLLETIC 186
              KI DFGLA++  ++    +    +     APE       ++K+DV+ +GI+L+E + 
Sbjct: 139 LVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVT 198

Query: 187 CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPA 246
             +      S PE I            R L +  R  + +    E L  + + C ++ P 
Sbjct: 199 YGRIPYPGMSNPEVI------------RALERGYRMPRPENCP-EELYNIMMRCWKNRPE 245

Query: 247 LRP 249
            RP
Sbjct: 246 ERP 248

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 3/41 (7%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK 142
           +G+ YLH      ILH D+KP N+L+      K+ DFGLA+
Sbjct: 113 RGLEYLHSNW---ILHRDLKPNNLLIASDGVLKLADFGLAR 150

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 25/163 (15%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR 153
           +  A  +++G+ YL    E  ++H D+  +N+L+ E    KI DFGL++   E+    KR
Sbjct: 130 ISFAWQISRGMQYL---AEMKLVHRDLAARNVLVAEGRKMKISDFGLSRDVYEEDSYVKR 186

Query: 154 DKG-----YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVY 208
            KG     +MA E       + ++DV+ +G++L E +    N       PE         
Sbjct: 187 SKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGN-PYPGIAPE--------- 236

Query: 209 KCFINRELNKLVRGTKVDKKN--LENLVKVGLWCVQDEPALRP 249
                R  N L  G ++++     E +  + L C + EP  RP
Sbjct: 237 -----RLFNLLKTGYRMERPENCSEEMYNLMLTCWKQEPDKRP 274

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 48.1 bits (114), Expect = 1e-06
 Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 11/99 (11%)

Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
           Q +  A DVA+G+ YL    +   +H D+  +NIL+ E + AKI DFGL++   ++  + 
Sbjct: 113 QLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIADFGLSR--GQEVYV- 166

Query: 152 KRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
           K+  G     +MA E    +  +  +DV+ YG++L E +
Sbjct: 167 KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIV 205

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 48.0 bits (114), Expect = 1e-06
 Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 20/121 (16%)

Query: 73  NGSLTDIIFCSAERNPYWNQRV-RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 131
           +G L+D  +  A+R  +  + +  + LDV +G+ YL       ++H D+  +N L+ E  
Sbjct: 83  HGCLSD--YLRAQRGKFSQETLLGMCLDVCEGMAYLESSN---VIHRDLAARNCLVGENQ 137

Query: 132 TAKILDFGLAKLPNEDFVID---------KRDKGYMAPECYKRTPISVKADVYGYGIVLL 182
             K+ DFG+ +     FV+D         K    + +PE +  +  S K+DV+ +G+++ 
Sbjct: 138 VVKVSDFGMTR-----FVLDDQYTSSTGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMW 192

Query: 183 E 183
           E
Sbjct: 193 E 193

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 6/90 (6%)

Query: 106 YLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG---YMAPEC 162
           ++HD     ILH DIK QNI + +  T K+ DFG+A++ N    + +   G   Y++PE 
Sbjct: 116 HVHDR---KILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVELARTCIGTPYYLSPEI 172

Query: 163 YKRTPISVKADVYGYGIVLLETICCRKNME 192
            +  P + K+D++  G VL E    +   E
Sbjct: 173 CENRPYNNKSDIWALGCVLYEMCTLKHAFE 202

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycystic kidney disease, which is characterized by benign polycystic tumors formed by abnormal overgrowth of renal epithelial cells. It appears also to be involved in DNA damage response, and may be important for both correct DNA damage checkpoint activation and DNA repair. Length = 256

>gnl|CDD|133192 cd05061, PTKc_InsR, Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

 Score = 48.0 bits (114), Expect = 1e-06
 Identities = 43/174 (24%), Positives = 80/174 (45%), Gaps = 33/174 (18%)

Query: 88  PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED 147
           P   + +++A ++A G+ YL+ +     +H D+  +N ++   +T KI DFG+ +   E 
Sbjct: 116 PTLQEMIQMAAEIADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYET 172

Query: 148 FVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEII 202
               K  KG     +MAPE  K    +  +D++ +G+VL E           A +P    
Sbjct: 173 DYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSL-------AEQP---- 221

Query: 203 LTNWVYKCFINRELNKLVR-GTKVDK-----KNLENLVKVGLWCVQDEPALRPM 250
                Y+   N ++ K V  G  +D+     + + +L+++   C Q  P +RP 
Sbjct: 222 -----YQGLSNEQVLKFVMDGGYLDQPDNCPERVTDLMRM---CWQFNPKMRPT 267

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein metabolism, ion and amino acid transport, cell cycle and proliferation, cell differentiation, gene transcription, and nitric oxide synthesis. Insulin resistance, caused by abnormalities in InsR signaling, has been described in diabetes, hypertension, cardiovascular disease, metabolic syndrome, heart failure, and female infertility. Length = 288

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 48.1 bits (114), Expect = 1e-06
 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 7/116 (6%)

Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           GSL D +     R       V +A  VA G+ Y+        +H D++  NIL+ +    
Sbjct: 85  GSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIE---RMNYIHRDLRSANILVGDGLVC 141

Query: 134 KILDFGLAKLPNEDFVIDKRDKGY----MAPECYKRTPISVKADVYGYGIVLLETI 185
           KI DFGLA+L  ++    ++   +     APE       ++K+DV+ +GI+L E +
Sbjct: 142 KIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELV 197

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 13/98 (13%)

Query: 97  ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK- 155
           A  +  G+ +LH      I++ D+KP+N+L+D+    +I D GLA     +    K+ K 
Sbjct: 101 AAQIICGLEHLHQR---RIVYRDLKPENVLLDDHGNVRISDLGLAV----ELKGGKKIKG 153

Query: 156 -----GYMAPECYKRTPISVKADVYGYGIVLLETICCR 188
                GYMAPE  +        D +  G  L E I  R
Sbjct: 154 RAGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGR 191

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 48.0 bits (114), Expect = 1e-06
 Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 9/98 (9%)

Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-LPNEDFVI 150
           Q +  A  + +G+ YLH +     +H D+  +N+L+D     KI DFGLAK +P      
Sbjct: 108 QLLLFAQQICEGMAYLHSQ---HYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYY 164

Query: 151 DKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLE 183
             R+ G     + A EC K    S  +DV+ +G+ L E
Sbjct: 165 RVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYE 202

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 14/98 (14%)

Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK--LPNEDFVIDKRDK-- 155
           +   + YLH      I+H D+KP NIL+D     K+ DFGL+K  L      ++  +K  
Sbjct: 102 IVLALEYLH---SNGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKED 158

Query: 156 -------GYMAPECYKRTPISVKADVYGYGIVLLETIC 186
                   Y+APE       S   D +  G +L E + 
Sbjct: 159 KRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLV 196

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 11/92 (11%)

Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG--- 156
           V KG+ YLH   +   +H DIK  NIL+ E  + KI DFG++    +     ++ +    
Sbjct: 111 VLKGLEYLHSNGQ---IHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFV 167

Query: 157 ----YMAPECYK-RTPISVKADVYGYGIVLLE 183
               +MAPE  +       KAD++ +GI  +E
Sbjct: 168 GTPCWMAPEVMEQVHGYDFKADIWSFGITAIE 199

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 16/112 (14%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKILDFGLAKLPNEDFVI 150
            R+ L V   +   H++    I+H D+KPQNI++        AK+LDFG+  L       
Sbjct: 82  GRLMLQVLDALACAHNQ---GIVHRDLKPQNIMVSQTGVRPHAKVLDFGIGTLLPGVRDA 138

Query: 151 DKR----------DKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNME 192
           D               Y APE  +  P++  +D+Y +G++ LE +  ++ ++
Sbjct: 139 DVATLTRTTEVLGTPTYCAPEQLRGEPVTPNSDLYAWGLIFLECLTGQRVVQ 190

This model represents proteins of 1350 in length, in multiple species of Burkholderia, in Acidovorax avenae subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1, and in multiple copies in Sorangium cellulosum, in genomic neighborhoods that include a cyclodehydratase/docking scaffold fusion protein (TIGR03882) and a member of the thiazole/oxazole modified metabolite (TOMM) precursor family TIGR03795. It has a kinase domain in the N-terminal 300 amino acids, followed by a cyclase homology domain, followed by regions without named domain definitions. It is a probable bacteriocin-like metabolite biosynthesis protein [Cellular processes, Toxin production and resistance]. Length = 1266

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 8/92 (8%)

Query: 97  ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKL--PNEDFVIDKRD 154
            + +AKG+ YL    E  ++H D+  +N+L+      KI DFGLAKL   +E     +  
Sbjct: 115 CVQIAKGMSYLE---EKRLVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKEYHAEGG 171

Query: 155 K---GYMAPECYKRTPISVKADVYGYGIVLLE 183
           K    +MA E       + K+DV+ YG+ + E
Sbjct: 172 KVPIKWMALESILHRIYTHKSDVWSYGVTVWE 203

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 17/103 (16%)

Query: 96  IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID---- 151
           +  DV + + YL        +H D+  +N L+ E    K+ DFGLA+     +V+D    
Sbjct: 105 MCSDVCEAMEYLESNG---FIHRDLAARNCLVGEDNVVKVSDFGLAR-----YVLDDQYT 156

Query: 152 -----KRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRK 189
                K    +  PE +  +  S K+DV+ +G+++ E     K
Sbjct: 157 SSQGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGK 199

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 13/89 (14%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKL------PNEDFVIDKRDK 155
           +G+ + H      ILH D+KP+N+L++     K+ DFGLA+       P   +V+ +   
Sbjct: 109 QGLAFCHSH---GILHRDLKPENLLINTEGVLKLADFGLARSFGSPVRPYTHYVVTRW-- 163

Query: 156 GYMAPEC-YKRTPISVKADVYGYGIVLLE 183
            Y APE        S   D++  G +  E
Sbjct: 164 -YRAPELLLGDKGYSTPVDIWSVGCIFAE 191

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 18/112 (16%)

Query: 83  SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK 142
           S +R  ++   +  AL       YLH  C+  +++ D+K +N+++D+    KI DFGL K
Sbjct: 93  SEDRARFYGAEIVSALG------YLH-SCD--VVYRDLKLENLMLDKDGHIKITDFGLCK 143

Query: 143 LPNEDFVIDKRDKG------YMAPECYKRTPISVKADVYGYGIVLLETICCR 188
              E        K       Y+APE  +        D +G G+V+ E +C R
Sbjct: 144 ---EGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGR 192

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis. Length = 323

>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

 Score = 47.7 bits (113), Expect = 2e-06
 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAP 160
           GI +LH      I+H D+KP NI++    T KILDFGLA+     F++      + Y AP
Sbjct: 138 GIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAP 194

Query: 161 ECYKRTPISVKADVYGYGIVLLETIC 186
           E           D++  G ++ E I 
Sbjct: 195 EVILGMGYKENVDIWSVGCIMGEMIK 220

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK1 specifically binds with JAMP (JNK1-associated membrane protein), which regulates the duration of JNK1 activity in response to stimuli. Specific JNK1 substrates include Itch and SG10, which are implicated in Th2 responses and airway inflammation, and microtubule dynamics and axodendritic length, respectively. Mice deficient in Jnk1 are protected against arthritis, obesity, type 2 diabetes, cardiac cell death, and non-alcoholic liver disease, suggesting that JNK1 may play roles in the pathogenesis of these diseases. Length = 364

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 47.3 bits (112), Expect = 2e-06
 Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 7/117 (5%)

Query: 73  NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT 132
            GSL D +           + +  +  +A+G+ Y+  +     +H D++  N+L+ E   
Sbjct: 85  KGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERK---NYIHRDLRAANVLVSESLM 141

Query: 133 AKILDFGLAKLPNEDFVIDKRDKGY----MAPECYKRTPISVKADVYGYGIVLLETI 185
            KI DFGLA++  ++    +    +     APE       ++K+DV+ +GI+L E +
Sbjct: 142 CKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIV 198

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 47.4 bits (112), Expect = 2e-06
 Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 30/185 (16%)

Query: 74  GSLTDIIFCSAERNPYWN--QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 131
           GSL D  F   E   Y    Q V +A  +A G+ Y+        +H D++  NIL+ E  
Sbjct: 85  GSLLD--FLKGEMGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENL 139

Query: 132 TAKILDFGLAKLPNEDFVIDKRDKGY----MAPECYKRTPISVKADVYGYGIVLLETICC 187
             K+ DFGLA+L  ++    ++   +     APE       ++K+DV+ +GI+L E    
Sbjct: 140 VCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE---- 195

Query: 188 RKNMEIDASKPEEIILTNWVYKCFINRE-LNKLVRGTKV--DKKNLENLVKVGLWCVQDE 244
              +      P         Y   +NRE L+++ RG ++    +  E+L  +   C + E
Sbjct: 196 ---LTTKGRVP---------YPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKE 243

Query: 245 PALRP 249
           P  RP
Sbjct: 244 PEERP 248

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|173692 cd05601, STKc_CRIK, Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 10/107 (9%)

Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFG-LAKLPNEDFVIDKRDKG-- 156
           +A+ +L +H   +   +H DIKP+N+L+D     K+ DFG  A+L     V  K   G  
Sbjct: 108 LAELVLAIHSVHQMGYVHRDIKPENVLIDRTGHIKLADFGSAARLTANKMVNSKLPVGTP 167

Query: 157 -YMAPEC------YKRTPISVKADVYGYGIVLLETICCRKNMEIDAS 196
            Y+APE         +    V+ D +  G++  E I  R       S
Sbjct: 168 DYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGTS 214

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnormal cytokinesis and massive apoptosis in neuronal precursors. A Down syndrome critical region protein TTC3 interacts with CRIK and inhibits CRIK-dependent neuronal differentiation and neurite extension. Length = 330

>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

 Score = 47.3 bits (112), Expect = 3e-06
 Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 27/170 (15%)

Query: 88  PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED 147
           P   + +++A ++A G+ YL+       +H D+  +N ++ E +T KI DFG+ +   E 
Sbjct: 116 PSLKKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYET 172

Query: 148 FVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEII 202
               K  KG     +M+PE  K    +  +DV+ +G+VL E       +   A +P    
Sbjct: 173 DYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWE-------IATLAEQP---- 221

Query: 203 LTNWVYKCFINRELNKLV-RGTKVDKKN--LENLVKVGLWCVQDEPALRP 249
                Y+   N ++ + V  G  +DK +   + L ++   C Q  P +RP
Sbjct: 222 -----YQGMSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRP 266

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, where it is frequently overexpressed, IGF-1R is implicated in proliferation, the suppression of apoptosis, invasion, and metastasis. IGF-1R is being developed as a therapeutic target in cancer treatment. Length = 277

>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

 Score = 46.9 bits (111), Expect = 3e-06
 Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 9/118 (7%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           ++ G+LTDI+   ++      Q   +   V + + YLH +    ++H DIK  +IL+   
Sbjct: 100 LQGGALTDIV---SQTRLNEEQIATVCESVLQALCYLHSQ---GVIHRDIKSDSILLTLD 153

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETI 185
              K+ DFG     ++D    K   G   +MAPE   RTP   + D++  GI+++E +
Sbjct: 154 GRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMV 211

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role in stress responses through its activation by the mitogen-activated protein kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6 is highly expressed in the brain. It is not required for viability, but together with PAK5, it is required for normal levels of locomotion and activity, and for learning and memory. Increased expression of PAK6 is found in primary and metastatic prostate cancer. PAK6 may play a role in the regulation of motility. Length = 297

>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

 Score = 46.9 bits (111), Expect = 3e-06
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 6/96 (6%)

Query: 91  NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVI 150
           NQ V   + +A  + YLH   E  ILH D+K QN+ +      K+ D G+A++      +
Sbjct: 102 NQVVEWFVQIAMALQYLH---EKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQCDM 158

Query: 151 DKRDKG---YMAPECYKRTPISVKADVYGYGIVLLE 183
                G   YM+PE +   P + K+DV+  G  + E
Sbjct: 159 ASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYE 194

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. Length = 257

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 3/42 (7%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKL 143
           +G+ +LH      I+H D+KPQNIL+      KI DFGLA++
Sbjct: 118 RGVDFLHSHR---IVHRDLKPQNILVTSDGQVKIADFGLARI 156

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|133237 cd05106, PTKc_CSF-1R, Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

 Score = 47.1 bits (112), Expect = 3e-06
 Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 18/100 (18%)

Query: 94  VRIALDVAKGILYLHDE-CEPPILHCDIKPQNILMDEFWTAKILDFGLAK--LPNEDFVI 150
           +R +  VA+G+ +L  + C    +H D+  +N+L+ +   AKI DFGLA+  + + ++V+
Sbjct: 215 LRFSSQVAQGMDFLASKNC----IHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYVV 270

Query: 151 DKRDKG-------YMAPECYKRTPISVKADVYGYGIVLLE 183
               KG       +MAPE       +V++DV+ YGI+L E
Sbjct: 271 ----KGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWE 306

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. It leads to increases in gene transcription and protein translation, and induces cytoskeletal remodeling. CSF-1R signaling leads to a variety of cellular responses including survival, proliferation, and differentiation of target cells. It plays an important role in innate immunity, tissue development and function, and the pathogenesis of some diseases including atherosclerosis and cancer. CSF-1R signaling is also implicated in mammary gland development during pregnancy and lactation. Aberrant CSF-1/CSF-1R expression correlates with tumor cell invasiveness, poor clinical prognosis, and bone metastasis in breast cancer. Although the structure of the human CSF-1R catalytic domain is known, it is excluded from this specific alignment model because it contains a deletion in its sequence. Length = 374

>gnl|CDD|133246 cd05115, PTKc_Zap-70, Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

 Score = 46.9 bits (111), Expect = 3e-06
 Identities = 39/138 (28%), Positives = 58/138 (42%), Gaps = 31/138 (22%)

Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-LPNEDFVIDKRDKG-- 156
           V+ G+ YL        +H D+  +N+L+     AKI DFGL+K L  +D     R  G  
Sbjct: 104 VSMGMKYLE---GKNFVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYKARSAGKW 160

Query: 157 ---YMAPECYKRTPISVKADVYGYGIVLLET-------------------ICCRKNMEID 194
              + APEC      S ++DV+ YGI + E                    I   K ++  
Sbjct: 161 PLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMKGPEVMSFIEQGKRLDCP 220

Query: 195 ASKPEEI---ILTNWVYK 209
           A  P E+   +   W+YK
Sbjct: 221 AECPPEMYALMKDCWIYK 238

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its phosphorylation and activation. It then phosphorylates target proteins, which propagate the signals to downstream pathways. Zap-70 is hardly detected in normal peripheral B-cells, but is present in some B-cell malignancies. It is used as a diagnostic marker for chronic lymphocytic leukemia (CLL) as it is associated with the more aggressive subtype of the disease. Length = 257

>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

 Score = 46.5 bits (110), Expect = 4e-06
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 6/97 (6%)

Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
           Q V  A +++ G+ +LH      I++ D+K  N+++D     KI DFG+ K    D V  
Sbjct: 102 QAVFYAAEISVGLFFLH---RRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVDGVTT 158

Query: 152 KRDKG---YMAPECYKRTPISVKADVYGYGIVLLETI 185
           +   G   Y+APE     P     D + YG++L E +
Sbjct: 159 RTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEML 195

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. PKC-alpha is expressed in many tissues and is associated with cell proliferation, apoptosis, and cell motility. It plays a role in the signaling of the growth factors PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha have been detected in many transformed cell lines and several human tumors. In addition, PKC-alpha is required for HER2 dependent breast cancer invasion. Length = 323

>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional

 Score = 46.8 bits (111), Expect = 5e-06
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 7/92 (7%)

Query: 104 ILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG------Y 157
           +L +H      ++H DIK  NIL+      K+ DFG +K+     V D   +       Y
Sbjct: 153 LLAVHHVHSKHMIHRDIKSANILLCSNGLVKLGDFGFSKM-YAATVSDDVGRTFCGTPYY 211

Query: 158 MAPECYKRTPISVKADVYGYGIVLLETICCRK 189
           +APE ++R P S KAD++  G++L E +  ++
Sbjct: 212 VAPEIWRRKPYSKKADMFSLGVLLYELLTLKR 243

Length = 496

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 46.4 bits (110), Expect = 5e-06
 Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 16/93 (17%)

Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      ++H D+KP NIL++E    KI DFGLA+      + D +  GY++
Sbjct: 117 ILRGLKYVH---SAGVVHRDLKPSNILINENCDLKICDFGLAR------IQDPQMTGYVS 167

Query: 160 PECYKRTPI-------SVKADVYGYGIVLLETI 185
              Y+   I        V+ D++  G +  E +
Sbjct: 168 TRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEML 200

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 46.0 bits (109), Expect = 5e-06
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 15/89 (16%)

Query: 104 ILYLHDECEPPILHCDIKPQNILMDEFWT-AKILDFGLAKLPNEDFVIDKRDKG------ 156
           +L LH      ILH D+K QNIL+D+     KI DFG++K      ++  + K       
Sbjct: 111 LLALHHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGISK------ILSSKSKAYTVVGT 164

Query: 157 --YMAPECYKRTPISVKADVYGYGIVLLE 183
             Y++PE  +  P + K+D++  G VL E
Sbjct: 165 PCYISPELCEGKPYNQKSDIWALGCVLYE 193

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 46.1 bits (109), Expect = 6e-06
 Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 24/121 (19%)

Query: 72  RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 131
           R G L + +FC   +             +  G+ YLH+ C   ++H DIK  N+++    
Sbjct: 95  RFGPLPEPVFCKYTKQ------------ILDGVAYLHNNC---VVHRDIKGNNVMLMPNG 139

Query: 132 TAKILDFGLAK--------LPNEDFVIDKRDKGY-MAPECYKRTPISVKADVYGYGIVLL 182
             K++DFG A+          + + +       Y MAPE    +    K+D++  G  + 
Sbjct: 140 IIKLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVF 199

Query: 183 E 183
           E
Sbjct: 200 E 200

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

 Score = 46.2 bits (109), Expect = 6e-06
 Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 12/109 (11%)

Query: 83  SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK 142
           S +R  ++   +  ALD      YLH      I++ D+K +N+++D+    KI DFGL K
Sbjct: 93  SEDRTRFYGAEIVSALD------YLH---SGKIVYRDLKLENLMLDKDGHIKITDFGLCK 143

Query: 143 LPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETICCR 188
               D    K   G   Y+APE  +        D +G G+V+ E +C R
Sbjct: 144 EGITDAATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGR 192

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulated in estrogen-deficient breast cancer cells, androgen-independent prostate cancer cells, and primary ovarian tumors. It acts as a key mediator in the genesis of ovarian cancer. Length = 328

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 46.2 bits (109), Expect = 6e-06
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 8/91 (8%)

Query: 98  LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG- 156
           + +AKG++YL    E  ++H D+  +N+L+      KI DFGLA+L   D      D G 
Sbjct: 116 VQIAKGMMYLE---ERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGK 172

Query: 157 ----YMAPECYKRTPISVKADVYGYGIVLLE 183
               +MA EC      + ++DV+ YG+ + E
Sbjct: 173 MPIKWMALECIHYRKFTHQSDVWSYGVTIWE 203

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

 Score = 45.9 bits (109), Expect = 7e-06
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 18/94 (19%)

Query: 100 VAKGILYLHDE-CEPPILHCDIKPQNILMDEFWTAKILDFGLAK--LPNEDFVIDKRDKG 156
           VAKG+ +L  + C    +H D+  +N+L+      KI DFGLA+  + + ++V+    KG
Sbjct: 150 VAKGMAFLASKNC----IHRDLAARNVLLTHGKIVKICDFGLARDIMNDSNYVV----KG 201

Query: 157 -------YMAPECYKRTPISVKADVYGYGIVLLE 183
                  +MAPE       + ++DV+ YGI+L E
Sbjct: 202 NARLPVKWMAPESIFNCVYTFESDVWSYGILLWE 235

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302

>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

 Score = 46.1 bits (109), Expect = 7e-06
 Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 6/92 (6%)

Query: 97  ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK---LPNEDFVIDKR 153
           A +VA  I YLH      I++ D+KP+NIL+D      + DFGL K    P E       
Sbjct: 102 AAEVASAIGYLHSL---NIIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPEETTSTFCG 158

Query: 154 DKGYMAPECYKRTPISVKADVYGYGIVLLETI 185
              Y+APE  ++ P     D +  G VL E +
Sbjct: 159 TPEYLAPEVLRKEPYDRTVDWWCLGAVLYEML 190

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. Length = 321

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 45.6 bits (108), Expect = 8e-06
 Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 16/106 (15%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA---KILDFGLAKLPNEDFVI 150
           +     + +G+ YLH+     I+H D+K  N+L+D   T    +I DFG A         
Sbjct: 106 INYTEQLLRGLSYLHEN---QIIHRDVKGANLLIDS--TGQRLRIADFGAAARLAAKGTG 160

Query: 151 DKRDKG-------YMAPECYKRTPISVKADVYGYGIVLLETICCRK 189
               +G       +MAPE  +        DV+  G V++E +   K
Sbjct: 161 AGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIE-MATAK 205

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 45.6 bits (108), Expect = 8e-06
 Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 16/100 (16%)

Query: 93  RVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA---------KL 143
           ++ IA  VA G+ YL +      +H D+  +N L+ E    KI DFGL+         K 
Sbjct: 132 QLCIAKQVAAGMAYLSER---KFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKA 188

Query: 144 PNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLE 183
              D +  +    +M PE       + ++DV+ YG+VL E
Sbjct: 189 SENDAIPIR----WMPPESIFYNRYTTESDVWAYGVVLWE 224

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 45.5 bits (108), Expect = 8e-06
 Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 9/93 (9%)

Query: 97  ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-LPNED--FVIDKR 153
           A+ +A G+ YL  +     +H D+  +NIL+      KI DFGL + LP  +  +V+++ 
Sbjct: 103 AVQIANGMRYLESK---RFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEH 159

Query: 154 DK---GYMAPECYKRTPISVKADVYGYGIVLLE 183
            K    + APE  +    S  +DV+ +G+ L E
Sbjct: 160 LKVPFAWCAPESLRTRTFSHASDVWMFGVTLWE 192

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|173635 cd05054, PTKc_VEGFR, Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

 Score = 45.6 bits (108), Expect = 9e-06
 Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 18/97 (18%)

Query: 97  ALDVAKGILYLHD-ECEPPILHCDIKPQNILMDEFWTAKILDFGLAK--LPNEDFVIDKR 153
           +  VA+G+ +L   +C    +H D+  +NIL+ E    KI DFGLA+    + D+V    
Sbjct: 179 SFQVARGMEFLASRKC----IHRDLAARNILLSENNVVKICDFGLARDIYKDPDYV---- 230

Query: 154 DKG-------YMAPECYKRTPISVKADVYGYGIVLLE 183
            KG       +MAPE       + ++DV+ +G++L E
Sbjct: 231 RKGDARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWE 267

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. There are five VEGF ligands in mammals, which bind, in an overlapping pattern to the three VEGFRs, which can form homo or heterodimers. VEGFRs regulate the cardiovascular system. They are critical for vascular development during embryogenesis and blood vessel formation in adults. They induce cellular functions common to other growth factor receptors such as cell migration, survival, and proliferation. VEGFR1 binds VEGFA, VEGFB, and placenta growth factor (PLGF). It regulates monocyte and macrophage migration, vascular permeability, haematopoiesis, and the recruitment of haematopietic progenitor cells from the bone marrow. Length = 337

>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

 Score = 45.4 bits (107), Expect = 9e-06
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 9/118 (7%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +  G+LTDI+  +        Q   + L V K +  LH +    ++H DIK  +IL+   
Sbjct: 99  LEGGALTDIVTHTRMNE---EQIAAVCLAVLKALSVLHAQ---GVIHRDIKSDSILLTHD 152

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETI 185
              K+ DFG     +++    K   G   +MAPE   R P   + D++  GI+++E +
Sbjct: 153 GRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMV 210

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 45.0 bits (106), Expect = 1e-05
 Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 7/116 (6%)

Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           GSL D +     +     Q V +A  +A G+ Y+        +H D++  NIL+ +    
Sbjct: 85  GSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIE---RMNYIHRDLRAANILVGDNLVC 141

Query: 134 KILDFGLAKLPNEDFVIDKRDKGY----MAPECYKRTPISVKADVYGYGIVLLETI 185
           KI DFGLA+L  ++    ++   +     APE       ++K+DV+ +GI+L E +
Sbjct: 142 KIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELV 197

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 42/121 (34%), Positives = 53/121 (43%), Gaps = 24/121 (19%)

Query: 74  GSLTDIIFCSAERNPYWNQRVRIA---LDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           GS +DI+     + P   Q V IA       +G+ YLH       +H DIK  NIL+ E 
Sbjct: 99  GSASDIL--EVHKKPL--QEVEIAAICHGALQGLAYLHSHER---IHRDIKAGNILLTEP 151

Query: 131 WTAKILDFGLAKL--PNEDFVIDKRDKG---YMAPE---CYKRTPISVKADVYGYGIVLL 182
            T K+ DFG A L  P   FV      G   +MAPE            K DV+  GI  +
Sbjct: 152 GTVKLADFGSASLVSPANSFV------GTPYWMAPEVILAMDEGQYDGKVDVWSLGITCI 205

Query: 183 E 183
           E
Sbjct: 206 E 206

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 45.0 bits (106), Expect = 1e-05
 Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 9/98 (9%)

Query: 92  QRVRIALDVAKGILYLHDE-CEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVI 150
           Q V+ ALD A G+ YL  + C    +H D+  +N L+ E    KI DFG+++  ++    
Sbjct: 94  QLVKFALDAAAGMAYLESKNC----IHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYS 149

Query: 151 DKRDK----GYMAPECYKRTPISVKADVYGYGIVLLET 184
               K     + APE       S ++DV+ YGI+L ET
Sbjct: 150 SSGLKQIPIKWTAPEALNYGRYSSESDVWSYGILLWET 187

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 15/87 (17%)

Query: 106 YLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK---G---YMA 159
           YLH      I++ D+KP+N+L+D     KI DFG AK       +  R     G   Y+A
Sbjct: 116 YLHSL---DIVYRDLKPENLLLDSDGYIKITDFGFAK------RVKGRTYTLCGTPEYLA 166

Query: 160 PECYKRTPISVKADVYGYGIVLLETIC 186
           PE           D +  GI++ E + 
Sbjct: 167 PEIILSKGYGKAVDWWALGILIYEMLA 193

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 12/104 (11%)

Query: 97  ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK- 155
           A ++  G+ +LH   E  I++ D+K  N+L+D     KI DFG+ K   E  +       
Sbjct: 102 AAEIVLGLQFLH---ERGIIYRDLKLDNVLLDSEGHIKIADFGMCK---EGILGGVTTST 155

Query: 156 -----GYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEID 194
                 Y+APE     P     D +  G++L E +  +   E D
Sbjct: 156 FCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGD 199

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

 Score = 45.4 bits (107), Expect = 1e-05
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 97  ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG 156
           A ++A G+ +LH +    I++ D+K  N+++D     KI DFG+ K    D V  K   G
Sbjct: 107 AAEIAIGLFFLHSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENMWDGVTTKTFCG 163

Query: 157 ---YMAPECYKRTPISVKADVYGYGIVLLETI 185
              Y+APE     P     D + +G++L E +
Sbjct: 164 TPDYIAPEIIAYQPYGKSVDWWAFGVLLYEML 195

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. The PKC beta isoforms (I and II), generated by alternative splicing of a single gene, are preferentially activated by hyperglycemia-induced DAG in retinal tissues. This is implicated in diabetic microangiopathy such as ischemia, neovascularization, and abnormal vasodilator function. PKC-beta also plays an important role in VEGF signaling. In addition, glucose regulates proliferation in retinal endothelial cells via PKC-betaI. PKC-beta is also being explored as a therapeutic target in cancer. It contributes to tumor formation and is involved in the tumor host mechanisms of inflammation and angiogenesis. Length = 323

>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 12/95 (12%)

Query: 97  ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG 156
           A ++A  + YLH      I++ D+KP+NIL+D      + DFGL K   E     K    
Sbjct: 102 AAEIASALGYLH---SLNIIYRDLKPENILLDSQGHVVLTDFGLCK---EGIEHSKTTST 155

Query: 157 ------YMAPECYKRTPISVKADVYGYGIVLLETI 185
                 Y+APE  ++ P     D +  G VL E +
Sbjct: 156 FCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEML 190

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell proliferation, and apoptosis. Length = 323

>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

 Score = 45.0 bits (106), Expect = 1e-05
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 16/96 (16%)

Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++        GY+A
Sbjct: 129 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMT------GYVA 179

Query: 160 PECYKRTPI-------SVKADVYGYGIVLLETICCR 188
              Y+   I       +   D++  G ++ E +  R
Sbjct: 180 TRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 215

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14, is expressed in most tissues and is the major isoform involved in the immune and inflammatory response. It is the central p38 MAPK involved in myogenesis. It plays a role in regulating cell cycle check-point transition and promoting cell differentiation. p38alpha also regulates cell proliferation and death through crosstalk with the JNK pathway. Its substrates include MAPK activated protein kinase 2 (MK2), MK5, and the transcription factors ATF2 and Mitf. Length = 345

>gnl|CDD|143375 cd07870, STKc_PFTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

 Score = 45.0 bits (106), Expect = 1e-05
 Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 7/88 (7%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK---LPNEDFVIDKRDKGYM 158
           +G+ Y+H +    ILH D+KPQN+L+      K+ DFGLA+   +P++ +  +     Y 
Sbjct: 114 RGLAYIHGQ---HILHRDLKPQNLLISYLGELKLADFGLARAKSIPSQTYSSEVVTLWYR 170

Query: 159 APEC-YKRTPISVKADVYGYGIVLLETI 185
            P+     T  S   D++G G + +E +
Sbjct: 171 PPDVLLGATDYSSALDIWGAGCIFIEML 198

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recessive form of juvenile ALS. The function of PFTAIRE-2 is not yet known. Length = 291

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 11/60 (18%)

Query: 91  NQRVR--------IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK 142
           N  V+          L + +GI YLH+     ILH DIK  NIL+D     KI DFGLA+
Sbjct: 107 NPSVKLTESQIKCYMLQLLEGINYLHEN---HILHRDIKAANILIDNQGILKIADFGLAR 163

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 11/94 (11%)

Query: 97  ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKL--PNEDFVIDKRD 154
           A  VA G+ YL        +H D+  +N+L+     AKI DFG+++      D+      
Sbjct: 101 AHQVAMGMAYLE---SKHFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYYRATTA 157

Query: 155 -----KGYMAPECYKRTPISVKADVYGYGIVLLE 183
                K Y APEC      S K+DV+ YG+ L E
Sbjct: 158 GRWPLKWY-APECINYGKFSSKSDVWSYGVTLWE 190

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 8/95 (8%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR 153
           V  A  VA+G+ +L  +     +H D+  +N+L+ E    KI DFGLA+  +      K 
Sbjct: 135 VSFAYQVARGMEFLASK---KCIHRDLAARNVLVTEDHVMKIADFGLARDIHHIDYYRKT 191

Query: 154 DKG-----YMAPECYKRTPISVKADVYGYGIVLLE 183
             G     +MAPE       + ++DV+ +G++L E
Sbjct: 192 TNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWE 226

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 11/103 (10%)

Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---- 147
           Q+++ A+ + KG+ YL        +H D+  +N+L++     KI DFGL K    D    
Sbjct: 110 QQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYY 166

Query: 148 FVIDKRDKG--YMAPECYKRTPISVKADVYGYGIVLLE--TIC 186
            V D  D    + APEC  ++   + +DV+ +G+ L E  T C
Sbjct: 167 TVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYC 209

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 7/91 (7%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK---LPNEDFVIDKRDKGYM 158
           +G+ Y H   +  ILH D+KPQN+L++E    K+ DFGLA+   +P + +  +     Y 
Sbjct: 114 RGLSYCH---KRKILHRDLKPQNLLINEKGELKLADFGLARAKSVPTKTYSNEVVTLWYR 170

Query: 159 APEC-YKRTPISVKADVYGYGIVLLETICCR 188
            P+     T  S   D++G G +L E    R
Sbjct: 171 PPDVLLGSTEYSTPIDMWGVGCILYEMATGR 201

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filaments (PHFs) and stimulate Tau phosphorylation. As AD progresses, phosphorylated Tau aggregates and forms PHFs, which leads to the formation of neurofibrillary tangles (NFTs). In human glioma cells, PCTAIRE-3 induces cell cycle arrest and cell death. Length = 288

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDK--RDKGYMA 159
           +G+ +LH  C   I+H D+KP+NIL+      K+ DFGLA++ +    +        Y A
Sbjct: 119 RGLDFLHANC---IVHRDLKPENILVTSGGQVKLADFGLARIYSCQMALTPVVVTLWYRA 175

Query: 160 PECYKRTPISVKADVYGYGIVLLE 183
           PE   ++  +   D++  G +  E
Sbjct: 176 PEVLLQSTYATPVDMWSVGCIFAE 199

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|133235 cd05104, PTKc_Kit, Catalytic domain of the Protein Tyrosine Kinase, Kit

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 100 VAKGILYLHDE-CEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED--FVIDKRDK- 155
           VAKG+ +L  + C    +H D+  +NIL+      KI DFGLA+    D  +V+    + 
Sbjct: 223 VAKGMSFLASKNC----IHRDLAARNILLTHGRITKICDFGLARDIRNDSNYVVKGNARL 278

Query: 156 --GYMAPECYKRTPISVKADVYGYGIVLLE 183
              +MAPE       + ++DV+ YGI+L E
Sbjct: 279 PVKWMAPESIFNCVYTFESDVWSYGILLWE 308

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. Kit signaling is involved in major cellular functions including cell survival, proliferation, differentiation, adhesion, and chemotaxis. Mutations in Kit, which result in constitutive ligand-independent activation, are found in human cancers such as gastrointestinal stromal tumor (GIST) and testicular germ cell tumor (TGCT). The aberrant expression of Kit and/or SCF is associated with other tumor types such as systemic mastocytosis and cancers of the breast, neurons, lung, prostate, colon, and rectum. Although the structure of the human Kit catalytic domain is known, it is excluded from this specific alignment model because it contains a deletion in its sequence. Length = 375

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 44.4 bits (106), Expect = 2e-05
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 3/47 (6%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF 148
           +G+ YLH      ++H D+KP NIL++     KI DFGLA+  + D 
Sbjct: 114 RGLKYLH---SANVIHRDLKPSNILVNSNCDLKICDFGLARGVDPDE 157

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAP 160
           GI +LH      I+H D+KP NI++    T KILDFGLA+    +F++      + Y AP
Sbjct: 135 GIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTACTNFMMTPYVVTRYYRAP 191

Query: 161 ECYKRTPISVKADVYGYGIVLLETI 185
           E           D++  G ++ E +
Sbjct: 192 EVILGMGYKENVDIWSVGCIMGELV 216

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK2 is specifically translocated to the mitochondria during dopaminergic cell death. Specific substrates include the microtubule-associated proteins DCX and Tau, as well as TIF-IA which is involved in ribosomal RNA synthesis regulation. Mice deficient in Jnk2 show protection against arthritis, type 1 diabetes, atherosclerosis, abdominal aortic aneurysm, cardiac cell death, TNF-induced liver damage, and tumor growth, indicating that JNK2 may play roles in the pathogenesis of these diseases. Length = 359

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 12/101 (11%)

Query: 91  NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVI 150
            + ++++LD A G+ YL  +     +H D+  +N L+ E    KI DFG+++   E+  I
Sbjct: 93  KKLLQMSLDAAAGMEYLESKN---CIHRDLAARNCLVGENNVLKISDFGMSR--EEEGGI 147

Query: 151 DKRDKG-------YMAPECYKRTPISVKADVYGYGIVLLET 184
                G       + APE       + ++DV+ YGI+L ET
Sbjct: 148 YTVSDGLKQIPIKWTAPEALNYGRYTSESDVWSYGILLWET 188

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

 Score = 44.2 bits (104), Expect = 2e-05
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 107 LHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAPECYK 164
           L D     I++ D+KP+NIL+D+    +I D GLA    E   +  R    GYMAPE   
Sbjct: 115 LEDLQRERIVYRDLKPENILLDDRGHIRISDLGLAVQIPEGETVRGRVGTVGYMAPEVIN 174

Query: 165 RTPISVKADVYGYGIVLLETI 185
               +   D +G G ++ E I
Sbjct: 175 NEKYTFSPDWWGLGCLIYEMI 195

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found in the testis, but is also present in the cerebellum and kidney. It is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK4 polymorphisms are associated with hypertension and salt sensitivity, as they cause hyperphosphorylation, desensitization, and internalization of the dopamine 1 (D1) receptor while increasing the expression of the angiotensin II type 1 receptor. GRK4 plays a crucial role in the D1 receptor regulation of sodium excretion and blood pressure. Length = 285

>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 12/93 (12%)

Query: 97  ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK- 155
           A ++A G+ +LH +    I++ D+K  N+++D     KI DFG+ K   E+    K  + 
Sbjct: 107 AAEIAIGLFFLHSK---GIIYRDLKLDNVMLDAEGHIKIADFGMCK---ENIFGGKTTRT 160

Query: 156 -----GYMAPECYKRTPISVKADVYGYGIVLLE 183
                 Y+APE     P     D + +G++L E
Sbjct: 161 FCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYE 193

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory domain. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. cPKCs are potent kinases for histones, myelin basic protein, and protamine. PKC-gamma is mainly expressed in neuronal tissues. It plays a role in protection from ischemia. Length = 324

>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

 Score = 44.2 bits (104), Expect = 3e-05
 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 12/109 (11%)

Query: 83  SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK 142
           + ER  ++   +  AL+      YLH      +++ DIK +N+++D+    KI DFGL K
Sbjct: 93  TEERARFYGAEIVSALE------YLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCK 143

Query: 143 LPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETICCR 188
               D    K   G   Y+APE  +        D +G G+V+ E +C R
Sbjct: 144 EGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGR 192

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in PKB-beta display normal growth weights but exhibit severe insulin resistance and diabetes, accompanied by lipoatrophy and B-cell failure. Length = 323

>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

 Score = 44.2 bits (104), Expect = 3e-05
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 7/91 (7%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK---LPNEDFVIDKRDKGYM 158
           +G+ Y H      +LH D+KPQN+L++E    K+ DFGLA+   +P + +  +     Y 
Sbjct: 115 RGLNYCHRR---KVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYSNEVVTLWYR 171

Query: 159 APEC-YKRTPISVKADVYGYGIVLLETICCR 188
            P+     T  S + D++G G +  E    R
Sbjct: 172 PPDILLGSTDYSTQIDMWGVGCIFYEMSTGR 202

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may play a role in regulating neurite outgrowth. It can also associate with Trap (Tudor repeat associator with PCTAIRE-2), a physiological partner of PCTAIRE-2; with p11, a small dimeric protein with similarity to S100; and with 14-3-3 proteins, mediators of phosphorylation-dependent interactions in many different proteins. Length = 301

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 15/90 (16%)

Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG------ 156
           G+ YLH      I+H DIK  NIL D     K+ DFG +K       I     G      
Sbjct: 116 GVEYLHSN---MIVHRDIKGANILRDSAGNVKLGDFGASKRLQ---TICSSGTGMKSVTG 169

Query: 157 ---YMAPECYKRTPISVKADVYGYGIVLLE 183
              +M+PE         KADV+  G  ++E
Sbjct: 170 TPYWMSPEVISGEGYGRKADVWSVGCTVVE 199

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|143374 cd07869, STKc_PFTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

 Score = 43.9 bits (103), Expect = 3e-05
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 7/88 (7%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK---LPNEDFVIDKRDKGYM 158
           +G+ Y+H      ILH D+KPQN+L+ +    K+ DFGLA+   +P+  +  +     Y 
Sbjct: 114 RGLSYIHQRY---ILHRDLKPQNLLISDTGELKLADFGLARAKSVPSHTYSNEVVTLWYR 170

Query: 159 APEC-YKRTPISVKADVYGYGIVLLETI 185
            P+     T  S   D++G G + +E I
Sbjct: 171 PPDVLLGSTEYSTCLDMWGVGCIFVEMI 198

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 and is inhibited by the p21 cell cycle inhibitor. It has also been shown to interact with the membrane-associated cyclin Y, which recruits the protein to the plasma membrane. Length = 303

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 15/103 (14%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW-----TAKILDFGLAK-LPNED 147
           + I LDVAKG +YL        +H D+  +N L+ E         KI DFGLA+ +   D
Sbjct: 109 LDICLDVAKGCVYLEQM---HFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSD 165

Query: 148 FVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
           +   K  +G     +MAPE       + ++DV+ +G+++ E +
Sbjct: 166 YY-RKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEIL 207

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|165478 PHA03212, PHA03212, serine/threonine kinase US3; Provisional

 Score = 44.2 bits (104), Expect = 3e-05
 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 11/117 (9%)

Query: 81  FCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGL 140
           + +A+RN      + I   V + I YLH   E  I+H DIK +NI ++      + DFG 
Sbjct: 172 YLAAKRNIAICDILAIERSVLRAIQYLH---ENRIIHRDIKAENIFINHPGDVCLGDFGA 228

Query: 141 AKLPNEDFVIDKRDKGYM------APECYKRTPISVKADVYGYGIVLLETICCRKNM 191
           A  P +  +   +  G+       APE   R P     D++  GIVL E   C  ++
Sbjct: 229 ACFPVD--INANKYYGWAGTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDSL 283

Length = 391

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 7/45 (15%)

Query: 103 GILYLHDECEPPILHCDIKPQNILM----DEFWTAKILDFGLAKL 143
           G+ YLH      +LH D+KP NIL+     E    KI D GLA+L
Sbjct: 120 GVHYLHSNW---VLHRDLKPANILVMGEGPERGVVKIGDLGLARL 161

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 3/41 (7%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK 142
           +GI Y H      +LH D+KPQN+L+D     K+ DFGLA+
Sbjct: 110 QGIAYCHSH---RVLHRDLKPQNLLIDREGALKLADFGLAR 147

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 43.3 bits (103), Expect = 4e-05
 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 3/41 (7%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK 142
           +G+ YLH      ILH DIK  NIL++     K+ DFGLA+
Sbjct: 111 EGLQYLHSN---GILHRDIKGSNILINNDGVLKLADFGLAR 148

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

 Score = 43.5 bits (102), Expect = 5e-05
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 13/95 (13%)

Query: 97  ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--- 153
           A ++  G+ ++H+     +++ D+KP NIL+DE    +I D GLA     DF   K    
Sbjct: 103 ATEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLAC----DFSKKKPHAS 155

Query: 154 --DKGYMAPECYKR-TPISVKADVYGYGIVLLETI 185
               GYMAPE  ++ T     AD +  G +L + +
Sbjct: 156 VGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLL 190

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is widely expressed in many tissues. GRK3-deficient mice show a lack of olfactory receptor desensitization and altered regulation of the M2 muscarinic airway. GRK3 is involved in modulating the cholinergic response of airway smooth muscles. It also plays a role in dopamine receptor regulation. GRK3 promoter polymorphisms may be associated with bipolar disorder. Length = 279

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 43.2 bits (102), Expect = 5e-05
 Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 16/109 (14%)

Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-LPNEDFVIDKRDKG-- 156
           + KG+ YL        +H D+  +NIL++     KI DFGL K LP +      R+ G  
Sbjct: 117 ICKGMEYLG---SKRYVHRDLATRNILVESENRVKIGDFGLTKVLPQDKEYYKVREPGES 173

Query: 157 ---YMAPECYKRTPISVKADVYGYGIVLLE--TICCRKNMEIDASKPEE 200
              + APE    +  SV +DV+ +G+VL E  T       +   S P E
Sbjct: 174 PIFWYAPESLTESKFSVASDVWSFGVVLYELFTYS-----DKSCSPPAE 217

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 43.3 bits (102), Expect = 5e-05
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 6/69 (8%)

Query: 96  IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK 155
           +A  +  GI YLH      I+H DIKP N+L++     KI DFG++++  +         
Sbjct: 173 VARQILSGIAYLHRR---HIVHRDIKPSNLLINSAKNVKIADFGVSRILAQTMDPCNSSV 229

Query: 156 G---YMAPE 161
           G   YM+PE
Sbjct: 230 GTIAYMSPE 238

Length = 353

>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

 Score = 43.5 bits (102), Expect = 5e-05
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAP 160
           GI +LH      I+H D+KP NI++    T KILDFGLA+     F++      + Y AP
Sbjct: 131 GIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAP 187

Query: 161 ECYKRTPISVKADVYGYGIVLLETI 185
           E           D++  G ++ E +
Sbjct: 188 EVILGMGYKENVDIWSVGCIMGEMV 212

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, stroke, sciatic axotomy neural death, and neuronal death due to NGF deprivation, oxidative stress, or exposure to beta-amyloid peptide. This suggests that JNK3 may play roles in the pathogenesis of these diseases. Length = 355

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 12/69 (17%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMAPE 161
           +G+ YLH      ILH DIKP N+L++     KI DFGLA++  E+      +  +M  E
Sbjct: 114 RGLKYLH---SAGILHRDIKPGNLLVNSNCVLKICDFGLARV--EEP----DESKHMTQE 164

Query: 162 C---YKRTP 167
               Y R P
Sbjct: 165 VVTQYYRAP 173

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 43.3 bits (102), Expect = 6e-05
 Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 8/95 (8%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA-KLPNEDFV--- 149
           ++  +D+A G+ YL +      +H D+  +N ++ E  T  + DFGL+ K+ + D+    
Sbjct: 116 LKFMVDIALGMEYLSNR---NFIHRDLAARNCMLREDMTVCVADFGLSKKIYSGDYYRQG 172

Query: 150 -IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLE 183
            I K    ++A E       + K+DV+ +G+ + E
Sbjct: 173 RIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWE 207

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score = 43.3 bits (102), Expect = 6e-05
 Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 16/93 (17%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTA-KILDFGLAK---LPNEDFVIDKRDKGY 157
           +GI Y H      +LH D+KPQN+L+D    A K+ DFGLA+   +P   F  +     Y
Sbjct: 113 RGIAYCHSH---RVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWY 169

Query: 158 MAPE-----CYKRTPISVKADVYGYGIVLLETI 185
            APE      +  TP+    D++  G +  E +
Sbjct: 170 RAPEILLGSRHYSTPV----DIWSVGCIFAEMV 198

Length = 294

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 42.9 bits (101), Expect = 6e-05
 Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 17/99 (17%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED------ 147
           + +A  ++  + YL  +     +H D+  +N L+ E    K+ DFGL++L   D      
Sbjct: 107 LYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA 163

Query: 148 ---FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLE 183
              F I      + APE       S+K+DV+ +G++L E
Sbjct: 164 GAKFPIK-----WTAPESLAYNKFSIKSDVWAFGVLLWE 197

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

 Score = 43.1 bits (101), Expect = 7e-05
 Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 8/100 (8%)

Query: 94  VRIAL-DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK---LPNEDFV 149
           V+I L  + +G+ Y H      +LH D+KPQN+L++E    K+ DFGLA+   +P + + 
Sbjct: 106 VKIFLYQILRGLAYCHRR---KVLHRDLKPQNLLINERGELKLADFGLARAKSVPTKTYS 162

Query: 150 IDKRDKGYMAPEC-YKRTPISVKADVYGYGIVLLETICCR 188
            +     Y  P+     +  S + D++G G +  E    R
Sbjct: 163 NEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGR 202

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play a role in regulating mitochondrial function in neurons. Length = 309

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 42.6 bits (101), Expect = 9e-05
 Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 27/129 (20%)

Query: 72  RNGSLTDIIFCSAERNPYWNQRVR------IALDVAKGILYLHDECEPPILHCDIKPQNI 125
             GS+TD++    +      +R++      I  +  +G+ YLH+     ++H DIK QNI
Sbjct: 92  GGGSVTDLV----KGLRKKGKRLKEEWIAYILRETLRGLAYLHEN---KVIHRDIKGQNI 144

Query: 126 LMDEFWTAKILDFGL-AKLPNEDFVIDKRDKG-----YMAPE---C-YKRTP-ISVKADV 174
           L+ +    K++DFG+ A+L +    + +R+       +MAPE   C  +       ++DV
Sbjct: 145 LLTKNAEVKLVDFGVSAQLDST---LGRRNTFIGTPYWMAPEVIACDEQPDASYDARSDV 201

Query: 175 YGYGIVLLE 183
           +  GI  +E
Sbjct: 202 WSLGITAIE 210

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 42.4 bits (100), Expect = 9e-05
 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 7/74 (9%)

Query: 92  QRVRIAL-DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKL---PNED 147
            RVR  L  + +GI + H      I+H DIKP+NIL+ +    K+ DFG A+    P E 
Sbjct: 100 SRVRKYLFQILRGIEFCHSH---NIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEV 156

Query: 148 FVIDKRDKGYMAPE 161
           +      + Y APE
Sbjct: 157 YTDYVATRWYRAPE 170

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 96  IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK 142
           + L + +G+ YLH+     I+H D+K  N+L+ +    KI DFGLA+
Sbjct: 113 LMLQLLRGLQYLHENF---IIHRDLKVSNLLLTDKGCLKIADFGLAR 156

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

 Score = 42.6 bits (100), Expect = 9e-05
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 13/93 (13%)

Query: 97  ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--- 153
           A ++  G+ ++H+     +++ D+KP NIL+DE    +I D GLA     DF   K    
Sbjct: 103 AAEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLAC----DFSKKKPHAS 155

Query: 154 --DKGYMAPECY-KRTPISVKADVYGYGIVLLE 183
               GYMAPE   K       AD +  G +L +
Sbjct: 156 VGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFK 188

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is composed of GRK2, GRK3, and similar proteins. GRK2 and GRK3 are both widely expressed in many tissues, although GRK2 is present at higher levels. They contain an N-terminal RGS homology (RH) domain, a central catalytic domain, and C-terminal pleckstrin homology (PH) domain that mediates PIP2 and G protein betagamma-subunit translocation to the membrane. GRK2 (also called beta-ARK or beta-ARK1) is important in regulating several cardiac receptor responses. It plays a role in cardiac development and in hypertension. Deletion of GRK2 in mice results in embryonic lethality, caused by hypoplasia of the ventricular myocardium. GRK2 also plays important roles in the liver (as a regulator of portal blood pressure), in immune cells, and in the nervous system. Altered GRK2 expression has been reported in several disorders including major depression, schizophrenia, bipolar disorder, and Parkinsonism. Length = 278

>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 14/90 (15%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMAPE 161
           KG+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  + +       + Y APE
Sbjct: 129 KGLKYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLARQTDSEMTGYVVTRWYRAPE 185

Query: 162 C------YKRTPISVKADVYGYGIVLLETI 185
                  Y +T      D++  G ++ E +
Sbjct: 186 VILNWMHYTQT-----VDIWSVGCIMAEML 210

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12, is predominantly expressed in skeletal muscle. Unlike p38alpha and p38beta, p38gamma is insensitive to pyridinylimidazoles. It displays an antagonizing function compared to p38alpha. p38gamma inhibits, while p38alpha stimulates, c-Jun phosphorylation and AP-1 mediated transcription. p38gamma also plays a role in the signaling between Ras and the estrogen receptor and has been implicated to increase cell invasion and breast cancer progression. In Xenopus, p38gamma is critical in the meiotic maturation of oocytes. Length = 343

>gnl|CDD|133234 cd05103, PTKc_VEGFR2, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 12/94 (12%)

Query: 97  ALDVAKGILYLHD-ECEPPILHCDIKPQNILMDEFWTAKILDFGLAK--LPNEDFVIDKR 153
           +  VAKG+ +L   +C    +H D+  +NIL+ E    KI DFGLA+    + D+V  K 
Sbjct: 185 SFQVAKGMEFLASRKC----IHRDLAARNILLSENNVVKICDFGLARDIYKDPDYV-RKG 239

Query: 154 DK----GYMAPECYKRTPISVKADVYGYGIVLLE 183
           D      +MAPE       ++++DV+ +G++L E
Sbjct: 240 DARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWE 273

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosphorylation and activation. VEGFR2 binds the ligands VEGFA, VEGFC, VEGFD and VEGFE. VEGFR2 signaling is implicated in all aspects of normal and pathological vascular endothelial cell biology. It induces a variety of cellular effects including migration, survival, and proliferation. It is critical in regulating embryonic vascular development and angiogenesis. VEGFR2 is the major signal transducer in pathological angiogenesis including cancer and diabetic retinopathy, and is a target for inhibition in cancer therapy. Length = 343

>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 5/81 (6%)

Query: 106 YLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-LPNEDFVIDKRDKGYMAPECYK 164
           YLH   +  I++ D+KP+N+L+D     K+ DFG AK +P+  F +    + Y+APE  +
Sbjct: 133 YLH-SKD--IIYRDLKPENLLLDNKGHVKVTDFGFAKKVPDRTFTLCGTPE-YLAPEVIQ 188

Query: 165 RTPISVKADVYGYGIVLLETI 185
                   D +  G++L E I
Sbjct: 189 SKGHGKAVDWWTMGVLLYEFI 209

Length = 329

>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 54/197 (27%), Positives = 77/197 (39%), Gaps = 52/197 (26%)

Query: 69  RPVRNGSLT--DIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNIL 126
           RP R  SLT  D++FC              A DVAKG  YL    E   +H DI  +N L
Sbjct: 106 RPERPSSLTMKDLLFC--------------ARDVAKGCKYLE---ENHFIHRDIAARNCL 148

Query: 127 MDEFW---TAKILDFGLAKLPNEDFVIDKRDKG--------YMAPECYKRTPISVKADVY 175
           +        AKI DFG+A+   + +      KG        +M PE +     + K DV+
Sbjct: 149 LTCKGPGRVAKIADFGMAR---DIYRASYYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVW 205

Query: 176 GYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRE-LNKLVRGTKVDK-KNLENL 233
            +G++L E                   L    Y    N+E +  +  G ++D  K     
Sbjct: 206 SFGVLLWEIFS----------------LGYMPYPGRTNQEVMEFVTGGGRLDPPKGCPGP 249

Query: 234 V-KVGLWCVQDEPALRP 249
           V ++   C Q  P  RP
Sbjct: 250 VYRIMTDCWQHTPEDRP 266

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277

>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 10/96 (10%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-LPNEDFVIDK 152
           V  A  VA+G+ YL  +     +H D+  +N+L+ E    KI DFGLA+ + N D+   K
Sbjct: 137 VSCAYQVARGMEYLASQ---KCIHRDLAARNVLVTEDNVMKIADFGLARDVHNIDYY-KK 192

Query: 153 RDKG-----YMAPECYKRTPISVKADVYGYGIVLLE 183
              G     +MAPE       + ++DV+ +G++L E
Sbjct: 193 TTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWE 228

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Many FGFR3 splice variants have been reported with the IIIb and IIIc isoforms being the predominant forms. FGFR3 IIIc is the isoform expressed in chondrocytes, the cells affected in dwarfism, while IIIb is expressed in epithelial cells. FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and FGF23. It is a negative regulator of long bone growth. In the cochlear duct and in the lens, FGFR3 is involved in differentiation while it appears to have a role in cell proliferation in epithelial cells. Germline mutations in FGFR3 are associated with skeletal disorders including several forms of dwarfism. Some missense mutations are associated with multiple myeloma and carcinomas of the bladder and cervix. Overexpression of FGFR3 is found in thyroid carcinoma. Length = 334

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 9/89 (10%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK---LPNEDFVIDKRDKGYM 158
           KGI + H   E  +LH D+KPQN+L+++    K+ DFGLA+   +P   F  +     Y 
Sbjct: 111 KGIAFCH---ENRVLHRDLKPQNLLINKRGELKLADFGLARAFGIPVNTFSNEVVTLWYR 167

Query: 159 APECY--KRTPISVKADVYGYGIVLLETI 185
           AP+     RT  S   D++  G ++ E I
Sbjct: 168 APDVLLGSRT-YSTSIDIWSVGCIMAEMI 195

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 8/91 (8%)

Query: 98  LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG- 156
           + +AKG+ YL +     ++H D+  +N+L+      KI DFGLAKL   D      + G 
Sbjct: 116 VQIAKGMNYLEER---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGADEKEYHAEGGK 172

Query: 157 ----YMAPECYKRTPISVKADVYGYGIVLLE 183
               +MA E       + ++DV+ YG+ + E
Sbjct: 173 VPIKWMALESILHRIYTHQSDVWSYGVTVWE 203

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands for EGFR include EGF, heparin binding EGF-like growth factor (HBEGF), epiregulin, amphiregulin, TGFalpha, and betacellulin. Upon ligand binding, EGFR can form homo- or heterodimers with other EGFR subfamily members. The EGFR signaling pathway is one of the most important pathways regulating cell proliferation, differentiation, survival, and growth. Overexpression and mutation in the kinase domain of EGFR have been implicated in the development and progression of a variety of cancers. A number of monoclonal antibodies and small molecule inhibitors have been developed that target EGFR, including the antibodies Cetuximab and Panitumumab, which are used in combination with other therapies for the treatment of colorectal cancer and non-small cell lung carcinoma (NSCLC). The small molecule inhibitors Gefitinib (Iressa) and Erlotinib (Tarceva), already used for NSCLC, are undergoing clinical trials for other types of cancer including gastrointestinal, breast, head and neck, and bladder. Length = 316

>gnl|CDD|133247 cd05116, PTKc_Syk, Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 9/90 (10%)

Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDK-RDKG-- 156
           V+ G+ YL    E   +H D+  +N+L+     AKI DFGL+K    D    K +  G  
Sbjct: 104 VSMGMKYLE---ETNFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYYKAKTHGKW 160

Query: 157 ---YMAPECYKRTPISVKADVYGYGIVLLE 183
              + APEC      S K+DV+ +G+++ E
Sbjct: 161 PVKWYAPECMNYYKFSSKSDVWSFGVLMWE 190

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. More recently, Syk expression has been detected in other cell types (including epithelial cells, vascular endothelial cells, neurons, hepatocytes, and melanocytes), suggesting a variety of biological functions in non-immune cells. Syk plays a critical role in maintaining vascular integrity and in wound healing during embryogenesis. It also regulates Vav3, which is important in osteoclast function including bone development. In breast epithelial cells, where Syk acts as a negative regulator for epidermal growth factor receptor (EGFR) signaling, loss of Syk expression is associated with abnormal proliferation during cancer development suggesting a potential role as a tumor suppressor. In mice, Syk has been shown to inhibit malignant transformation of mammary epithelial cells induced with murine mammary tumor virus (MMTV). Length = 257

>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 13/117 (11%)

Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK--LPNEDFV 149
           Q V +A+ +A G+ YLH      ++H DI  +N ++DE    KI D  L++   P +   
Sbjct: 118 QLVHMAIQIACGMSYLHKR---GVIHKDIAARNCVIDEELQVKITDNALSRDLFPMDYHC 174

Query: 150 I---DKRDKGYMAPECYKRTPISVKADVYGYGIVLLE--TICCRKNMEIDASKPEEI 201
           +   + R   +MA E       S  +DV+ +G++L E  T+     +EID   P E+
Sbjct: 175 LGDNENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEID---PFEM 228

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It acts as a chemorepulsive axon guidance receptor of Wnt glycoproteins and is responsible for the establishment of axon tracts during the development of the central nervous system. In addition, studies in mice reveal that Ryk is essential in skeletal, craniofacial, and cardiac development. Thus, it appears Ryk is involved in signal transduction despite its lack of kinase activity. Ryk may function as an accessory protein that modulates the signals coming from catalytically active partner RTKs such as the Eph receptors. Length = 280

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 19/105 (18%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK---LPNEDFVIDKRDKGYM 158
           +G+ + H      +LH D+KPQN+L++     K+ DFGLA+   +P   +  +     Y 
Sbjct: 111 QGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYR 167

Query: 159 APEC-----YKRTPISVKADVYGYGIVLLETICCRK----NMEID 194
           APE      Y  T +    D++  G +  E +  R     + EID
Sbjct: 168 APEILLGCKYYSTAV----DIWSLGCIFAEMVTRRALFPGDSEID 208

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 3/41 (7%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK 142
           +G+ Y H      +LH D+KPQN+L+ E    K+ DFGLA+
Sbjct: 114 RGLAYCHQR---RVLHRDLKPQNLLISERGELKLADFGLAR 151

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the membrane-associated cyclin Y. PCTAIRE-like proteins show unusual expression patterns with high levels in post-mitotic tissues, suggesting that they may be involved in regulating post-mitotic cellular events. Length = 291

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 9/100 (9%)

Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
           Q V +   +A G+ YL D      +H D+  +NIL++     K+ DFGL+++  +D    
Sbjct: 107 QLVGMLRGIASGMKYLSDM---GYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAA 163

Query: 152 KRDKG------YMAPECYKRTPISVKADVYGYGIVLLETI 185
              +G      + APE       +  +DV+ YGIV+ E +
Sbjct: 164 YTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVM 203

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 14/93 (15%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMAPE 161
           +G+ Y+H      I+H D+KP NI ++E    KILDFGLA+  +++       + Y APE
Sbjct: 129 RGLKYIH---SAGIIHRDLKPSNIAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPE 185

Query: 162 C------YKRTPISVKADVYGYGIVLLETICCR 188
                  Y +T      D++  G ++ E +  +
Sbjct: 186 IMLNWMHYNQT-----VDIWSVGCIMAELLTGK 213

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 19/120 (15%)

Query: 74  GSLTDIIF--CSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 131
           GSLTD++   C  E      Q   +  +  + + +LH      ++H DIK  NIL+    
Sbjct: 102 GSLTDVVTETCMDE-----GQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDG 153

Query: 132 TAKILDFGL-AKLPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
           + K+ DFG  A++  E     KR        +MAPE   R     K D++  GI+ +E I
Sbjct: 154 SVKLTDFGFCAQITPEQ---SKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMI 210

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 3/40 (7%)

Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK 142
           GIL+ H      +LH D+KPQN+L+D     K+ DFGLA+
Sbjct: 113 GILFCHSR---RVLHRDLKPQNLLIDNKGVIKLADFGLAR 149

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine Kinase, HER2

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 8/91 (8%)

Query: 98  LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG- 156
           + +AKG+ YL    E  ++H D+  +N+L+      KI DFGLA+L + D      D G 
Sbjct: 116 VQIAKGMSYLE---EVRLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGK 172

Query: 157 ----YMAPECYKRTPISVKADVYGYGIVLLE 183
               +MA E       + ++DV+ YG+ + E
Sbjct: 173 VPIKWMALESILHRRFTHQSDVWSYGVTVWE 203

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER2 does not bind to any known EGFR subfamily ligands, but contributes to the kinase activity of all possible heterodimers. It acts as the preferred partner with other ligand-bound EGFR proteins and functions as a signal amplifier, with the HER2-HER3 heterodimer being the most potent pair in mitogenic signaling. HER2 plays an important role in cell development, proliferation, survival and motility. Overexpression of HER2 results in its activation and downstream signaling, even in the absence of ligand. HER2 overexpression, mainly due to gene amplification, has been shown in a variety of human cancers. Its role in breast cancer is especially well-documented. HER2 is up-regulated in about 25% of breast tumors and is associated with increases in tumor aggressiveness, recurrence and mortality. HER2 is a target for monoclonal antibodies and small molecule inhibitors, which are being developed as treatments for cancer. The first humanized antibody approved for clinical use is Trastuzumab (Herceptin), which is being used in combination with other therapies to improve the survival rates of patients with HER2-overexpressing breast cancer. Length = 279

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK 142
           + I Y H      I+H DIKP+NIL+ E    K+ DFG A+
Sbjct: 111 QAIAYCHSH---NIIHRDIKPENILVSESGVLKLCDFGFAR 148

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 16/94 (17%)

Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK------- 155
           G+ +LH   +  I++ D+KP+N+L+D     +I D GLA       + D + K       
Sbjct: 109 GLEHLH---QRRIIYRDLKPENVLLDNDGNVRISDLGLAVE-----LKDGQSKTKGYAGT 160

Query: 156 -GYMAPECYKRTPISVKADVYGYGIVLLETICCR 188
            G+MAPE  +        D +  G+ L E I  R
Sbjct: 161 PGFMAPELLQGEEYDFSVDYFALGVTLYEMIAAR 194

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual group of GRKs and is expressed in retinal cells. It phosphorylates rhodopsin in rod cells, which leads to termination of the phototransduction cascade. Mutations in GRK1 are associated to a recessively inherited form of stationary nightblindness called Oguchi disease. Length = 280

>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 14/88 (15%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMAPE 161
           +G+ Y+H      I+H D+KP N+ ++E    +ILDFGLA+  +++       + Y APE
Sbjct: 129 RGLKYIH---SAGIIHRDLKPSNVAVNEDCELRILDFGLARQADDEMTGYVATRWYRAPE 185

Query: 162 C------YKRTPISVKADVYGYGIVLLE 183
                  Y +T      D++  G ++ E
Sbjct: 186 IMLNWMHYNQT-----VDIWSVGCIMAE 208

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is widely expressed in tissues and shows more similarity with p38alpha than with the other isoforms. Both are sensitive to pyridinylimidazoles and share some common substrates such as MAPK activated protein kinase 2 (MK2) and the transcription factors ATF2, c-Fos and, ELK-1. p38beta is involved in regulating the activation of the cyclooxygenase-2 promoter and the expression of TGFbeta-induced alpha-smooth muscle cell actin. Length = 343

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 8/95 (8%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLP-NEDF--VI 150
           + IA+ +A G+ YL        +H D+  +N L+ E  T KI DFGL++   + D+  V 
Sbjct: 127 LHIAIQIAAGMEYLSSH---HFVHRDLAARNCLVGEGLTVKISDFGLSRDIYSADYYRVQ 183

Query: 151 DKR--DKGYMAPECYKRTPISVKADVYGYGIVLLE 183
            K      +M PE       + ++D++ +G+VL E
Sbjct: 184 SKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWE 218

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 7/105 (6%)

Query: 83  SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK 142
              +    +Q + +  DV +G+ YL  +     +H D+  +N L+D+    K+ DFGL++
Sbjct: 92  EHGKRFQPSQLLEMCKDVCEGMAYLESK---QFIHRDLAARNCLVDDQGCVKVSDFGLSR 148

Query: 143 LPNED----FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLE 183
              +D     V  K    +  PE    +  S K+DV+ +G+++ E
Sbjct: 149 YVLDDEYTSSVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWE 193

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 6/92 (6%)

Query: 97  ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK---LPNEDFVIDKR 153
           A ++A  + YLH      I++ D+KP+NIL+D      + DFGL K     N        
Sbjct: 102 AAEIASALGYLH---SLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNGTTSTFCG 158

Query: 154 DKGYMAPECYKRTPISVKADVYGYGIVLLETI 185
              Y+APE   + P     D +  G VL E +
Sbjct: 159 TPEYLAPEVLHKQPYDRTVDWWCLGAVLYEML 190

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt sensitivity, memory consolidation, and cardiac repolarization. A common SGK1 variant is associated with increased blood pressure and body weight. SGK1 may also contribute to tumor growth, neurodegeneration, fibrosing disease, and ischemia. Length = 325

>gnl|CDD|215638 PLN03225, PLN03225, Serine/threonine-protein kinase SNT7; Provisional

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 13/58 (22%)

Query: 115 ILHCDIKPQNILMDEF-WTAKILDFGLAK--------LPNEDFVIDKRDKGYMAPECY 163
           I+H D+KPQNI+  E   + KI+D G A         +P E F++D R   Y APE Y
Sbjct: 276 IVHRDVKPQNIIFSEGSGSFKIIDLGAAADLRVGINYIPKE-FLLDPR---YAAPEQY 329

Length = 566

>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 22/119 (18%)

Query: 70  PVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE 129
           P    S  D++ C              A  VA+G+ YL  +     +H D+  +N+L+ E
Sbjct: 133 PEEQLSFKDLVSC--------------AYQVARGMEYLASK---KCIHRDLAARNVLVTE 175

Query: 130 FWTAKILDFGLAKLPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLE 183
               KI DFGLA+  +      K   G     +MAPE       + ++DV+ +G++L E
Sbjct: 176 DNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWE 234

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 15/91 (16%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGL-AKLPNEDFVIDKRDK--G-- 156
           KG+ YLH   E   +H DIK  NIL+ E    K+ DFG+ A+L      I KR    G  
Sbjct: 112 KGLAYLH---ETGKIHRDIKGANILLTEDGDVKLADFGVSAQLTA---TIAKRKSFIGTP 165

Query: 157 -YMAPECY---KRTPISVKADVYGYGIVLLE 183
            +MAPE     ++     K D++  GI  +E
Sbjct: 166 YWMAPEVAAVERKGGYDGKCDIWALGITAIE 196

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 3/41 (7%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK 142
           +G+ Y+H      ++H D+KP N+L++E    +I DFG+A+
Sbjct: 118 RGLKYIHSAN---VIHRDLKPSNLLVNEDCELRIGDFGMAR 155

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 17/121 (14%)

Query: 74  GSLTDIIFCSAERNPYWNQRVRIAL-DVAKGILYLHDECEPPILHCDIKPQNILMDEFWT 132
           G   D +    ER P    ++R+      + + YLH+     I+H D+K  NIL      
Sbjct: 86  GGAVDAVMLELER-PLTEPQIRVVCKQTLEALNYLHEN---KIIHRDLKAGNILFTLDGD 141

Query: 133 AKILDFGLAKLPNEDFVIDKRDK-----GYMAPECY-----KRTPISVKADVYGYGIVLL 182
            K+ DFG++        I +RD       +MAPE       K  P   KADV+  GI L+
Sbjct: 142 IKLADFGVSA--KNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLI 199

Query: 183 E 183
           E
Sbjct: 200 E 200

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. Length = 282

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 19/120 (15%)

Query: 74  GSLTDIIF--CSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 131
           GSLTD++   C  E      Q   +  +  + + +LH      ++H DIK  NIL+    
Sbjct: 101 GSLTDVVTETCMDE-----GQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDG 152

Query: 132 TAKILDFGL-AKLPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
           + K+ DFG  A++  E     KR        +MAPE   R     K D++  GI+ +E +
Sbjct: 153 SVKLTDFGFCAQITPEQ---SKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMV 209

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 10/97 (10%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFV---- 149
           +++  + A G+ YL  +     +H D+  +N L+ E    KI DFG+++   ED V    
Sbjct: 97  IQMVENAAAGMEYLESKH---CIHRDLAARNCLVTEKNVLKISDFGMSR-EEEDGVYAST 152

Query: 150 --IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLET 184
             + +    + APE       S ++DV+ +GI+L E 
Sbjct: 153 GGMKQIPVKWTAPEALNYGRYSSESDVWSFGILLWEA 189

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 15/120 (12%)

Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           G   D I    +R     Q   I   + + + YLH      I+H D+K  N+L+      
Sbjct: 93  GGAVDAIMLELDRGLTEPQIQVICRQMLEALQYLHSM---KIIHRDLKAGNVLLTLDGDI 149

Query: 134 KILDFGLAKLPNEDFVIDKRDK-----GYMAPEC-----YKRTPISVKADVYGYGIVLLE 183
           K+ DFG++    +   + +RD       +MAPE       K TP   KAD++  GI L+E
Sbjct: 150 KLADFGVSAKNVK--TLQRRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIE 207

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Length = 292

>gnl|CDD|165291 PHA02988, PHA02988, hypothetical protein; Provisional

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 22/103 (21%), Positives = 48/103 (46%), Gaps = 4/103 (3%)

Query: 85  ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLP 144
           E++  +  ++ +A+D  KG+  L+     P  + ++   + L+ E +  KI+  GL K+ 
Sbjct: 116 EKDLSFKTKLDMAIDCCKGLYNLYKYTNKP--YKNLTSVSFLVTENYKLKIICHGLEKIL 173

Query: 145 NEDFVIDKRDKGYMAPECYKR--TPISVKADVYGYGIVLLETI 185
           +     +     Y + +      +  ++K D+Y  G+VL E  
Sbjct: 174 SSPPFKNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIF 216

Length = 283

>gnl|CDD|133233 cd05102, PTKc_VEGFR3, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

 Score = 40.8 bits (95), Expect = 4e-04
 Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 10/93 (10%)

Query: 97  ALDVAKGILYLHD-ECEPPILHCDIKPQNILMDEFWTAKILDFGLAK--LPNEDFVIDKR 153
           +  VA+G+ +L   +C    +H D+  +NIL+ E    KI DFGLA+    + D+V    
Sbjct: 180 SFQVARGMEFLASRKC----IHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGS 235

Query: 154 DK---GYMAPECYKRTPISVKADVYGYGIVLLE 183
            +    +MAPE       + ++DV+ +G++L E
Sbjct: 236 ARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWE 268

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. VEGFR3 preferentially binds the ligands VEGFC and VEGFD. VEGFR3 is essential for lymphatic endothelial cell (EC) development and function. It has been shown to regulate adaptive immunity during corneal transplantation. VEGFR3 is upregulated on blood vascular ECs in pathological conditions such as vascular tumors and the periphery of solid tumors. It plays a role in cancer progression and lymph node metastasis. Missense mutations in the VEGFR3 gene are associated with primary human lymphedema. Length = 338

>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 14/90 (15%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMAPE 161
            G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  + +       + Y APE
Sbjct: 128 CGLKYIH---SAGIIHRDLKPGNLAVNEDCELKILDFGLARHADAEMTGYVVTRWYRAPE 184

Query: 162 C------YKRTPISVKADVYGYGIVLLETI 185
                  Y +T      D++  G ++ E +
Sbjct: 185 VILNWMHYNQT-----VDIWSVGCIMAEML 209

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13, is found in skeletal muscle, heart, lung, testis, pancreas, and small intestine. It regulates microtubule function by phosphorylating Tau. It activates the c-jun promoter and plays a role in G2 cell cycle arrest. It also controls the degration of c-Myb, which is associated with myeloid leukemia and poor prognosis in colorectal cancer. p38delta is the main isoform involved in regulating the differentiation and apoptosis of keratinocytes. Length = 342

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 3/41 (7%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK 142
           KG+ + H      +LH D+KPQN+L+++    K+ DFGLA+
Sbjct: 110 KGLAFCHSH---NVLHRDLKPQNLLINKNGELKLADFGLAR 147

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score = 40.4 bits (94), Expect = 4e-04
 Identities = 38/118 (32%), Positives = 51/118 (43%), Gaps = 18/118 (15%)

Query: 74  GSLTDIIFCSAERNPYWNQRVRIAL---DVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           GS +D++     + P   Q V IA       +G+ YLH      ++H DIK  NIL+ E 
Sbjct: 105 GSASDLL--EVHKKPL--QEVEIAAITHGALQGLAYLHSHN---MIHRDIKAGNILLTEP 157

Query: 131 WTAKILDFGLAKL--PNEDFVIDKRDKGYMAPE---CYKRTPISVKADVYGYGIVLLE 183
              K+ DFG A    P   FV       +MAPE            K DV+  GI  +E
Sbjct: 158 GQVKLADFGSASKSSPANSFV---GTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIE 212

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

>gnl|CDD|140293 PTZ00267, PTZ00267, NIMA-related protein kinase; Provisional

 Score = 40.8 bits (95), Expect = 5e-04
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 8/82 (9%)

Query: 107 LHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK-----GYMAPE 161
           +H      ++H D+K  NI +      K+ DFG +K  ++   +D          Y+APE
Sbjct: 185 VHSRK---MMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSVSLDVASSFCGTPYYLAPE 241

Query: 162 CYKRTPISVKADVYGYGIVLLE 183
            ++R   S KAD++  G++L E
Sbjct: 242 LWERKRYSKKADMWSLGVILYE 263

Length = 478

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 20/107 (18%)

Query: 90  WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFV 149
             Q V +   +A G+ YL +      +H D+  +NIL++     K+ DFGL++       
Sbjct: 105 VGQLVGMLRGIASGMKYLSEMN---YVHRDLAARNILVNSNLVCKVSDFGLSR------R 155

Query: 150 IDKRDKGY-----------MAPECYKRTPISVKADVYGYGIVLLETI 185
           ++  +  Y            APE       +  +DV+ +GIV+ E +
Sbjct: 156 LEDSEATYTTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVM 202

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 26/102 (25%), Positives = 38/102 (37%), Gaps = 32/102 (31%)

Query: 116 LHCDIKPQNILMDEFWTAKILDFGLAK--------------------LPNEDFVIDKRDK 155
           +H DIKP NIL+D     K+ DFGL K                      N         +
Sbjct: 123 IHRDIKPDNILIDADGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVRRRDHKQ 182

Query: 156 ------------GYMAPECYKRTPISVKADVYGYGIVLLETI 185
                        Y+APE  + TP  ++ D +  G++L E +
Sbjct: 183 RRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEML 224

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Proteins in this subfamily are involved in regulating many cellular functions including contraction, motility, division, proliferation, apoptosis, morphogenesis, and cytokinesis. Length = 350

>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

 Score = 40.0 bits (93), Expect = 5e-04
 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 7/91 (7%)

Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG---YMA 159
           G+ ++H++    +LH DIK +NI + +    K+ DFG A+L            G   Y+ 
Sbjct: 112 GVQHIHEK---RVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGAYACTYVGTPYYVP 168

Query: 160 PECYKRTPISVKADVYGYGIVLLETICCRKN 190
           PE ++  P + K+D++  G +L E +C  K+
Sbjct: 169 PEIWENMPYNNKSDIWSLGCILYE-LCTLKH 198

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activation of Vav2 and contributes to prolactin-mediated motility of breast cancer cells. Length = 255

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 115 ILHCDIKPQNILMDEFWTAKILDFGLAK--LPNEDFVIDKRDKGYMAPECYKRTPISVKA 172
            +H D+KP+N L+D     K+ DFGL+K  +   + V+   D  YMAPE  +        
Sbjct: 122 YIHRDLKPENFLIDASGHIKLTDFGLSKGIVTYANSVVGSPD--YMAPEVLRGKGYDFTV 179

Query: 173 DVYGYGIVLLETIC 186
           D +  G +L E +C
Sbjct: 180 DYWSLGCMLYEFLC 193

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

 Score = 40.4 bits (94), Expect = 6e-04
 Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 12/95 (12%)

Query: 97  ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG 156
           A ++A  + YLH      I++ D+KP+NIL+D      + DFGL K   E          
Sbjct: 102 AAEIASALGYLH---SINIVYRDLKPENILLDSQGHVVLTDFGLCK---EGIAQSDTTTT 155

Query: 157 ------YMAPECYKRTPISVKADVYGYGIVLLETI 185
                 Y+APE  ++ P     D +  G VL E +
Sbjct: 156 FCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEML 190

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. Length = 325

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 40.1 bits (93), Expect = 6e-04
 Identities = 43/177 (24%), Positives = 73/177 (41%), Gaps = 31/177 (17%)

Query: 84  AERNP----YWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFG 139
           AE N       +Q + IA  +A G++YL  +     +H D+  +N L+ E    KI DFG
Sbjct: 109 AEGNRPAELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENLLVKIGDFG 165

Query: 140 LAKLPNEDFVIDKRDKG--------YMAPECYKRTPISVKADVYGYGIVLLETICCRKNM 191
           +++   + +  D    G        +M PE       + ++DV+  G+VL E     K  
Sbjct: 166 MSR---DVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGK-- 220

Query: 192 EIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALR 248
                +P   +  N V +C     + +  R         + +  + L C Q EP +R
Sbjct: 221 -----QPWYQLSNNEVIECITQGRVLQRPRTCP------KEVYDLMLGCWQREPHMR 266

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

 Score = 40.3 bits (94), Expect = 6e-04
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 94  VRIALDVAKGILYLHDE-CEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDK 152
           V  A  VA+G+ YL    C    +H D+  +N+L+ E    KI DFGLA+  ++     K
Sbjct: 137 VSCAYQVARGMEYLESRRC----IHRDLAARNVLVTEDNVMKIADFGLARGVHDIDYYKK 192

Query: 153 RDKG-----YMAPECYKRTPISVKADVYGYGIVLLE 183
              G     +MAPE       + ++DV+ +GI++ E
Sbjct: 193 TSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWE 228

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Unlike other FGFRs, there is only one splice form of FGFR4. It binds FGF1, FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective ligand for FGFR4. Although disruption of FGFR4 in mice causes no obvious phenotype, in vivo inhibition of FGFR4 in cultured skeletal muscle cells resulted in an arrest of muscle progenitor differentiation. FGF6 and FGFR4 are uniquely expressed in myofibers and satellite cells. FGF6/FGFR4 signaling appears to play a key role in the regulation of muscle regeneration. A polymorphism in FGFR4 is found in head and neck squamous cell carcinoma. Length = 314

>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 19/81 (23%)

Query: 91  NQRVRIALDVAK--------GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK 142
           N+ V+  L   K        G+ Y+H      ILH D+K  NIL+ +    K+ DFGLA+
Sbjct: 111 NKNVKFTLSEIKKVMKMLLNGLYYIHRN---KILHRDMKAANILITKDGILKLADFGLAR 167

Query: 143 LPNEDFVIDKRDKGYMAPECY 163
                F + K  K    P  Y
Sbjct: 168 ----AFSLSKNSK----PNRY 180

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multiple steps of gene expression including transcription elongation, mRNA synthesis, processing, export, and translation. It also plays a role in mediating cytokine induced transcription networks such as IL6-induced STAT3 signaling. In addition, the CDK9/cyclin T2a complex promotes muscle differentiation and enhances the function of some myogenic regulatory factors. Length = 310

>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 11/89 (12%)

Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFV-IDKRDKGYMAPE 161
           G+ Y+H      +LH D+KP N+L++     KI DFGLA+  +E+          Y+A  
Sbjct: 117 GLKYIH---SANVLHRDLKPGNLLVNADCELKICDFGLARGFSENPGENAGFMTEYVATR 173

Query: 162 CYKRTPI-------SVKADVYGYGIVLLE 183
            Y+   I       +   DV+  G +L E
Sbjct: 174 WYRAPEIMLSFQSYTKAIDVWSVGCILAE 202

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall construction, morphogenesis, and ion homeostasis. MPK1 is activated in response to cell wall stress including heat stimulation, osmotic shock, UV irradiation, and any agents that interfere with cell wall biogenesis such as chitin antagonists, caffeine, or zymolase. MPK1 is regulated by the MAP2Ks Mkk1/2, which are regulated by the MAP3K Bck1. Pmk1 is also activated by multiple stresses including elevated temperatures, hyper- or hypotonic stress, glucose deprivation, exposure to cell-wall damaging compounds, and oxidative stress. It is regulated by the MAP2K Pek1, which is regulated by the MAP3K Mkh1. Length = 332

>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 12/66 (18%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED------FVIDKRDK 155
           +G+ Y+H      +LH D+KP N+L++     KI DFGLA+  +E       +V+ +   
Sbjct: 119 RGLKYIH---SANVLHRDLKPSNLLLNANCDLKICDFGLARTTSEKGDFMTEYVVTRW-- 173

Query: 156 GYMAPE 161
            Y APE
Sbjct: 174 -YRAPE 178

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. This subfamily represents the TEY subtype and is further subdivided into three groups (A, B, and C). Group A is represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4 (NtNTF4), among others. They are mostly involved in environmental and hormonal responses. AtMPK3 and AtMPK6 are also key regulators for stomatal development and patterning. Group B is represented by AtMPK4, AtMPK13, and NtNTF6, among others. They may be involved in both cell division and environmental stress response. AtMPK4 also participates in regulating innate immunity. Group C is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa MAPK4 (OsMAPK4), among others. They may also be involved in stress responses. AtMPK1 and AtMPK2 are activated following mechanical injury and in the presence of stress chemicals such as jasmonic acid, hydrogen peroxide and abscisic acid. OsMAPK4 is also called OsMSRMK3 for Multiple Stress-Responsive MAPK3. Length = 337

>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

 Score = 40.0 bits (93), Expect = 6e-04
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 8/95 (8%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR 153
           V     VA+G+ YL  +     +H D+  +N+L+ E    KI DFGLA+  N      K 
Sbjct: 140 VSCTYQVARGMEYLASQ---KCIHRDLAARNVLVTENNVMKIADFGLARDVNNIDYYKKT 196

Query: 154 DKG-----YMAPECYKRTPISVKADVYGYGIVLLE 183
             G     +MAPE       + ++DV+ +G+++ E
Sbjct: 197 TNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWE 231

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. There are many splice variants of FGFR2 which show differential expression and binding to FGF ligands. Disruption of either FGFR2 or FGFR2b is lethal in mice, due to defects in the placenta or severe impairment of tissue development including lung, limb, and thyroid, respectively. Disruption of FGFR2c in mice results in defective bone and skull development. Genetic alterations of FGFR2 are associated with many human skeletal disorders including Apert syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and Pfeiffer syndrome. Length = 304

>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

 Score = 39.9 bits (93), Expect = 6e-04
 Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 13/121 (10%)

Query: 97  ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG 156
           A ++   +++LHD+    I++ D+K  N+L+D     K+ DFG+ K    +        G
Sbjct: 102 AAEITSALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGKTTSTFCG 158

Query: 157 ---YMAPECYKRTPISVKADVYGYGIVLLETICCRKNME-------IDASKPEEIILTNW 206
              Y+APE  +        D +  G++L E +C     E        +A   +E++   W
Sbjct: 159 TPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAILNDEVVYPTW 218

Query: 207 V 207
           +
Sbjct: 219 L 219

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signaling of cell-type specific differentiation. It is also expressed in pro-B cells and early-stage thymocytes, and acts as a key regulator in early B-cell development. PKC-eta increases glioblastoma multiforme (GBM) proliferation and resistance to radiation, and is being developed as a therapeutic target for the management of GBM. Length = 320

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score = 39.7 bits (92), Expect = 7e-04
 Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 19/120 (15%)

Query: 74  GSLTDIIF--CSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 131
           GSLTD++   C  E      Q   +  +  + + +LH      ++H DIK  NIL+    
Sbjct: 101 GSLTDVVTETCMDE-----GQIAAVCRECLQALDFLHSN---QVIHRDIKSDNILLGMDG 152

Query: 132 TAKILDFGL-AKLPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
           + K+ DFG  A++  E     KR        +MAPE   R     K D++  GI+ +E +
Sbjct: 153 SVKLTDFGFCAQITPEQ---SKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMV 209

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

 Score = 39.5 bits (92), Expect = 7e-04
 Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 8/100 (8%)

Query: 91  NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVI 150
           NQ     + +  G+ Y+H   +  ILH D+K +NI +      KI DFG+++L      +
Sbjct: 106 NQVCEWFIQLLLGVHYMH---QRRILHRDLKAKNIFLKNN-LLKIGDFGVSRLLMGSCDL 161

Query: 151 DKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETICC 187
                G   YM+PE  K      K+D++  G +L E +CC
Sbjct: 162 ATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYE-MCC 200

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M checkpoint. Nek11 may also play a role in the S-phase checkpoint as well as in DNA replication and genotoxic stress responses. Length = 260

>gnl|CDD|133238 cd05107, PTKc_PDGFR_beta, Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

 Score = 40.0 bits (93), Expect = 8e-04
 Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 18/100 (18%)

Query: 94  VRIALDVAKGILYLHDE-CEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDK 152
           V  +  VA G+ +L  + C    +H D+  +N+L+ E    KI DFGLA+    D + D 
Sbjct: 242 VGFSYQVANGMEFLASKNC----VHRDLAARNVLICEGKLVKICDFGLAR----DIMRDS 293

Query: 153 R--DKG-------YMAPECYKRTPISVKADVYGYGIVLLE 183
               KG       +MAPE       +  +DV+ +GI+L E
Sbjct: 294 NYISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWE 333

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-DD induce PDGFR beta homodimerization. PDGFR signaling plays many roles in normal embryonic development and adult physiology. PDGFR beta signaling leads to a variety of cellular effects including the stimulation of cell growth and chemotaxis, as well as the inhibition of apoptosis and GAP junctional communication. It is critical in normal angiogenesis as it is involved in the recruitment of pericytes and smooth muscle cells essential for vessel stability. Aberrant PDGFR beta expression is associated with some human cancers. The continuously-active fusion proteins of PDGFR beta with COL1A1 and TEL are associated with dermatofibrosarcoma protuberans (DFSP) and a subset of chronic myelomonocytic leukemia (CMML), respectively. Length = 401

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 39.4 bits (93), Expect = 8e-04
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK 142
           + +G+ ++H        H D+KP+N+L+      KI DFGLA+
Sbjct: 108 ILQGLAHIHKH---GFFHRDLKPENLLVSGPEVVKIADFGLAR 147

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine Kinase, HER3

 Score = 39.6 bits (92), Expect = 9e-04
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 24/97 (24%)

Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           +AKG+ YL +     ++H ++  +NIL+      +I DFG+A L   D      DK Y  
Sbjct: 118 IAKGMYYLEEHR---MVHRNLAARNILLKSDSIVQIADFGVADLLYPD------DKKYFY 168

Query: 160 PECYKRTPI-------------SVKADVYGYGIVLLE 183
            E   +TPI             + ++DV+ YG+ + E
Sbjct: 169 SEH--KTPIKWMALESILFGRYTHQSDVWSYGVTVWE 203

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER3 binds the neuregulin ligands, NRG1 and NRG2. HER3 contains an impaired tyr kinase domain and relies on its heterodimerization partners for activity following ligand binding. The HER2-HER3 heterodimer constitutes a high affinity co-receptor capable of potent mitogenic signaling. HER3 participates in a signaling pathway involved in the proliferation, survival, adhesion, and motility of tumor cells. Length = 279

>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

 Score = 39.3 bits (91), Expect = 0.001
 Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 15/120 (12%)

Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           GS+TD+I  +            I  ++ +G+ +LH   +  ++H DIK QN+L+ E    
Sbjct: 94  GSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLH---QHKVIHRDIKGQNVLLTENAEV 150

Query: 134 KILDFGLAKLPNEDFVIDKRDK-----GYMAPE---CYKRTPIS--VKADVYGYGIVLLE 183
           K++DFG++     D  + +R+       +MAPE   C +    +   K+D++  GI  +E
Sbjct: 151 KLVDFGVSA--QLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIE 208

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytoskeleton. Length = 272

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 39.1 bits (91), Expect = 0.001
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 17/97 (17%)

Query: 96  IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID---- 151
           +  DV +G+ YL        +H D+  +N L+      K+ DFG+ +     +V+D    
Sbjct: 105 MCQDVCEGMEYLE---RNSFIHRDLAARNCLVSSTGVVKVSDFGMTR-----YVLDDEYT 156

Query: 152 -----KRDKGYMAPECYKRTPISVKADVYGYGIVLLE 183
                K    +  PE +  +  S K+DV+ +G+++ E
Sbjct: 157 SSSGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWE 193

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 12/61 (19%)

Query: 115 ILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG--------YMAPECYKRT 166
           I++ DIK +NIL+D      + DFGL+K     F+ ++ ++         YMAPE  +  
Sbjct: 126 IIYRDIKLENILLDSEGHVVLTDFGLSKE----FLAEEEERAYSFCGTIEYMAPEVIRGG 181

Query: 167 P 167
            
Sbjct: 182 S 182

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 38.9 bits (90), Expect = 0.002
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 19/120 (15%)

Query: 74  GSLTDIIF--CSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 131
           GSLTD++   C  E      Q   +  +  + + +LH      ++H DIK  N+L+    
Sbjct: 101 GSLTDVVTETCMDEA-----QIAAVCRECLQALEFLHAN---QVIHRDIKSDNVLLGMDG 152

Query: 132 TAKILDFGL-AKLPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
           + K+ DFG  A++  E     KR        +MAPE   R     K D++  GI+ +E +
Sbjct: 153 SVKLTDFGFCAQITPEQ---SKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMV 209

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 31/101 (30%)

Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEF-WTAKILDFGLAKL-----P-NEDF---- 148
           + +G+ YLHD     I+H DIK  N+L++ +    KI DFG +K      P  E F    
Sbjct: 117 ILEGLKYLHDN---QIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLAGINPCTETFTGTL 173

Query: 149 ------VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLE 183
                 VIDK  +GY AP           AD++  G  ++E
Sbjct: 174 QYMAPEVIDKGPRGYGAP-----------ADIWSLGCTIVE 203

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|173653 cd05105, PTKc_PDGFR_alpha, Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

 Score = 38.9 bits (90), Expect = 0.002
 Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 18/94 (19%)

Query: 100 VAKGILYLHDE-CEPPILHCDIKPQNILMDEFWTAKILDFGLAK--LPNEDFVIDKRDKG 156
           VA+G+ +L  + C    +H D+  +N+L+ +    KI DFGLA+  + + ++V     KG
Sbjct: 246 VARGMEFLASKNC----VHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYV----SKG 297

Query: 157 -------YMAPECYKRTPISVKADVYGYGIVLLE 183
                  +MAPE       +  +DV+ YGI+L E
Sbjct: 298 STFLPVKWMAPESIFDNLYTTLSDVWSYGILLWE 331

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-AB, and PDGF-CC induce PDGFR alpha homodimerization. PDGFR signaling plays many roles in normal embryonic development and adult physiology. PDGFR alpha signaling is important in the formation of lung alveoli, intestinal villi, mesenchymal dermis, and hair follicles, as well as in the development of oligodendrocytes, retinal astrocytes, neural crest cells, and testicular cells. Aberrant PDGFR alpha expression is associated with some human cancers. Mutations in PDGFR alpha have been found within a subset of gastrointestinal stromal tumors (GISTs). An active fusion protein FIP1L1-PDGFR alpha, derived from interstitial deletion, is associated with idiopathic hypereosinophilic syndrome (HES) and chronic eosinophilic leukemia (CEL). Length = 400

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 19/106 (17%)

Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
           Q V +   +A G+ YL    E   +H D+  +NIL++     K+ DFGL++   +    D
Sbjct: 107 QLVGMLRGIAAGMKYL---SEMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLED----D 159

Query: 152 KRDKGY------------MAPECYKRTPISVKADVYGYGIVLLETI 185
             D  Y             APE       +  +DV+ YGIV+ E +
Sbjct: 160 TSDPTYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVM 205

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 5/88 (5%)

Query: 98  LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDK--RDK 155
             + +G+ +LH      ++H D+KPQNIL+      K+ DFGLA++ +    +       
Sbjct: 117 FQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTL 173

Query: 156 GYMAPECYKRTPISVKADVYGYGIVLLE 183
            Y APE   ++  +   D++  G +  E
Sbjct: 174 WYRAPEVLLQSSYATPVDLWSVGCIFAE 201

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytoplasm. It is also present in the ruffling edge of spreading fibroblasts and may play a role in cell spreading. It binds to the p21 inhibitor without any effect on its own activity and it is overexpressed in squamous cell carcinomas and neuroblastomas. CDK6 has also been shown to inhibit cell differentiation in many cell types. Length = 290

>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 8/95 (8%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA-KLPNEDFV--- 149
           V+   D+A G+ YL  +     +H D+  +N +++E     + DFGL+ K+ N D+    
Sbjct: 115 VKFMTDIASGMEYLSSK---SFIHRDLAARNCMLNENMNVCVADFGLSKKIYNGDYYRQG 171

Query: 150 -IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLE 183
            I K    ++A E       + K+DV+ +G+ + E
Sbjct: 172 RIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWE 206

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272

>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 17/121 (14%)

Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           GS+TD++  +       +    I  ++ +G+ +LH      ++H DIK QN+L+ E    
Sbjct: 104 GSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHAH---KVIHRDIKGQNVLLTENAEV 160

Query: 134 KILDFGL-AKLPNEDFVIDKRDK-----GYMAPECY--KRTPISV---KADVYGYGIVLL 182
           K++DFG+ A+L   D  + +R+       +MAPE       P +    ++D++  GI  +
Sbjct: 161 KLVDFGVSAQL---DRTVGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAI 217

Query: 183 E 183
           E
Sbjct: 218 E 218

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K4 is also called Nck Interacting kinase (NIK). It facilitates the activation of the MAPKs, extracellular signal-regulated kinase (ERK) 1, ERK2, and c-Jun N-terminal kinase (JNK), by phosphorylating and activating MEKK1. MAP4K4 plays a role in tumor necrosis factor (TNF) alpha-induced insulin resistance. MAP4K4 silencing in skeletal muscle cells from type II diabetic patients restores insulin-mediated glucose uptake. MAP4K4, through JNK, also plays a broad role in cell motility, which impacts inflammation, homeostasis, as well as the invasion and spread of cancer. MAP4K4 is found to be highly expressed in most tumor cell lines relative to normal tissue. MAP4K6 (also called MINK for Misshapen/NIKs-related kinase) is activated after Ras induction and mediates activation of p38 MAPK. MAP4K6 plays a role in cell cycle arrest, cytoskeleton organization, cell adhesion, and cell motility. Length = 282

>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 13/84 (15%)

Query: 115 ILHCDIKPQNILMDEFWTAKILDFGLAKL--PNED-------FVIDKRDKGYMAPECYKR 165
           +LH D+KP N+L++     KI DFGLA++  P  D       +V     + Y APE    
Sbjct: 127 VLHRDLKPSNLLLNTNCDLKICDFGLARIADPEHDHTGFLTEYVA---TRWYRAPEIMLN 183

Query: 166 TPISVKA-DVYGYGIVLLETICCR 188
           +    KA D++  G +L E +  R
Sbjct: 184 SKGYTKAIDIWSVGCILAEMLSNR 207

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase kinase from the Raf family. ERK1/2 have numerous substrates, many of which are nuclear and participate in transcriptional regulation of many cellular processes. They regulate cell growth, cell proliferation, and cell cycle progression from G1 to S phase. Although the distinct roles of ERK1 and ERK2 have not been fully determined, it is known that ERK2 can maintain most functions in the absence of ERK1, and that the deletion of ERK2 is embryonically lethal. The MAPK, Fus3, regulates yeast mating processes including mating-specific gene expression, G1 arrest, mating projection, and cell fusion. Length = 336

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 9/100 (9%)

Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
           Q V +   +A G+ YL D      +H D+  +NIL++     K+ DFGL+++  +D    
Sbjct: 108 QLVGMLRGIAAGMKYLSDM---NYVHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEGT 164

Query: 152 KRDKG------YMAPECYKRTPISVKADVYGYGIVLLETI 185
               G      + APE       +  +DV+ +GIV+ E +
Sbjct: 165 YTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVM 204

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

 Score = 38.1 bits (88), Expect = 0.002
 Identities = 38/118 (32%), Positives = 52/118 (44%), Gaps = 18/118 (15%)

Query: 74  GSLTDIIFCSAERNPYWNQRVRIAL---DVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           GS +D++     + P   Q V IA       +G+ YLH      ++H DIK  NIL+ E 
Sbjct: 109 GSASDLL--EVHKKPL--QEVEIAAITHGALQGLAYLHSH---NMIHRDIKAGNILLTEP 161

Query: 131 WTAKILDFGLAKL--PNEDFVIDKRDKGYMAPE---CYKRTPISVKADVYGYGIVLLE 183
              K+ DFG A +  P   FV       +MAPE            K DV+  GI  +E
Sbjct: 162 GQVKLADFGSASIASPANSFV---GTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIE 216

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 38.1 bits (88), Expect = 0.002
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 8/95 (8%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-LPNEDFVIDK 152
           + IA+ +A G+ YL        +H D+  +NIL+ E    KI D GL++ + + D+   +
Sbjct: 127 LHIAIQIAAGMEYLSSHF---FVHKDLAARNILIGEQLHVKISDLGLSREIYSADYYRVQ 183

Query: 153 RDK----GYMAPECYKRTPISVKADVYGYGIVLLE 183
                   +M PE       S  +D++ +G+VL E
Sbjct: 184 PKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWE 218

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 23/97 (23%)

Query: 106 YLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKL----------------PNEDFV 149
           YLH+     I+H D+KP N+L+      K+ DFGL+K+                   +F+
Sbjct: 116 YLHNY---GIVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMSLTTNLYEGHIEKDTREFL 172

Query: 150 IDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLE 183
            DK+  G   Y+APE   R       D +  GI+L E
Sbjct: 173 -DKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYE 208

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. MAST1, MAST2, and MAST3 bind and phosphorylate the tumor suppressor PTEN, and may contribute to the regulation and stabilization of PTEN. MAST2 is involved in the regulation of the Fc-gamma receptor of the innate immune response in macrophages, and may also be involved in the regulation of the Na+/H+ exchanger NHE3. Length = 305

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 3/40 (7%)

Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK 142
           G+ +LHD     ILH D+K  N+L++     KI DFGLA+
Sbjct: 118 GVAHLHDNW---ILHRDLKTSNLLLNNRGILKICDFGLAR 154

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 115 ILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRT 166
           I++ D+KP+NIL+D     K+ DFGL K    +  +     G   YMAPE   R+
Sbjct: 121 IIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGTVTHTFCGTIEYMAPEILMRS 175

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta). Length = 323

>gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine Kinase, Tyro3

 Score = 38.0 bits (88), Expect = 0.003
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 8/95 (8%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA-KLPNEDF---- 148
           VR  +D+A G+ YL  +     +H D+  +N +++E  T  + DFGL+ K+ + D+    
Sbjct: 116 VRFMIDIASGMEYLSSK---NFIHRDLAARNCMLNENMTVCVADFGLSKKIYSGDYYRQG 172

Query: 149 VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLE 183
              K    ++A E       +  +DV+ +G+ + E
Sbjct: 173 CASKLPVKWLALESLADNVYTTHSDVWAFGVTMWE 207

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic factor. It is also expressed in osteoclasts and has a role in bone resorption. Length = 273

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 11/86 (12%)

Query: 106 YLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK-----GYMAP 160
           Y+H   +  ++H DIK  NIL+      K+ DFG+A L N+     KR        +MAP
Sbjct: 116 YIH---KVGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQ--NSSKRSTFVGTPYWMAP 170

Query: 161 ECYKR-TPISVKADVYGYGIVLLETI 185
           E          KAD++  GI + E  
Sbjct: 171 EVITEGKYYDTKADIWSLGITIYEMA 196

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 13/85 (15%)

Query: 104 ILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR-----DKGYM 158
           + YLH +    I++ D+KP+NIL+D+    K+ DFG AK      + D+         Y+
Sbjct: 114 LEYLHSK---EIVYRDLKPENILLDKEGHIKLTDFGFAKK-----LRDRTWTLCGTPEYL 165

Query: 159 APECYKRTPISVKADVYGYGIVLLE 183
           APE  +    +   D +  GI++ E
Sbjct: 166 APEVIQSKGHNKAVDWWALGILIYE 190

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 37.9 bits (89), Expect = 0.003
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 3/41 (7%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK 142
           K + Y+H      ++H D+KP NIL++     K+ DFGLA+
Sbjct: 118 KALKYIHSG---NVIHRDLKPSNILLNSDCRVKLADFGLAR 155

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

 Score = 37.6 bits (87), Expect = 0.003
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 17/102 (16%)

Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA--KLPNEDFVIDK 152
           R+A +VA G+L+LH   +   +H D+  +N  +    + KI D+GLA  + P ED+ I K
Sbjct: 104 RMACEVASGLLWLH---QADFIHSDLALRNCQLTADLSVKIGDYGLALEQYP-EDYYITK 159

Query: 153 RDKG----YMAPECY-------KRTPISVKADVYGYGIVLLE 183
                   ++APE              + K++++  G+ + E
Sbjct: 160 DCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWE 201

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kinases based on overall sequence similarity and the phylogenetic tree. However, analysis of catalytic residues suggests that Aatyk proteins may be multispecific kinases, functioning also as serine/threonine kinases. They are involved in neural differentiation, nerve growth factor (NGF) signaling, apoptosis, and spermatogenesis. Length = 269

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 37.7 bits (87), Expect = 0.004
 Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 14/101 (13%)

Query: 91  NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-LPNEDFV 149
           +Q + IA  +A G++YL  +     +H D+  +N L+      KI DFG+++ + + D+ 
Sbjct: 123 SQMLHIASQIASGMVYLASQ---HFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYY 179

Query: 150 IDKRDKG-------YMAPECYKRTPISVKADVYGYGIVLLE 183
              R  G       +M PE       + ++DV+ +G++L E
Sbjct: 180 ---RVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWE 217

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score = 37.6 bits (88), Expect = 0.004
 Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 20/80 (25%)

Query: 115 ILHCDIKPQNILMDEFWTAKILDFGLA-----KLPNEDFVIDKRDKGYMAPEC------Y 163
           I H DIKP+NIL+      K+ DFG       K P  ++ I  R   Y APEC      Y
Sbjct: 121 IFHRDIKPENILIK-DDILKLADFGSCRGIYSKPPYTEY-ISTR--WYRAPECLLTDGYY 176

Query: 164 KRTPISVKADVYGYGIVLLE 183
                  K D++  G V  E
Sbjct: 177 -----GPKMDIWAVGCVFFE 191

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 6/51 (11%)

Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR 153
           G+ Y H +     LH DIK  NIL++     K+ DFGLA+L N +   + R
Sbjct: 128 GLNYCHKK---NFLHRDIKCSNILLNNKGQIKLADFGLARLYNSE---ESR 172

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

 Score = 37.5 bits (87), Expect = 0.004
 Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 10/141 (7%)

Query: 97  ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK---LPNEDFVIDKR 153
           A +V   +++LH      +++ D+K  NIL+D     K+ DFG+ K   L          
Sbjct: 102 AAEVTLALMFLHRH---GVIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVTTTTFCG 158

Query: 154 DKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKP--EEIILTNWVYKCF 211
              Y+APE  +        D +  G+++ E +  +   E D      E I+  + +Y  +
Sbjct: 159 TPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEADNEDDLFESILHDDVLYPVW 218

Query: 212 INRELNKLVRG--TKVDKKNL 230
           +++E   +++   TK   K L
Sbjct: 219 LSKEAVSILKAFMTKNPNKRL 239

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to neoplastic transformation depending on the cell type. It contributes to oncogenesis by inducing disordered cell growth and inhibiting cell death. It also plays a role in tumor invasion and metastasis. PKC-epsilon has also been found to confer cardioprotection against ischemia and reperfusion-mediated damage. Other cellular functions include the regulation of gene expression, cell adhesion, and cell motility. Length = 321

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	257
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	100.0
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
PHA02988	283	hypothetical protein; Provisional	100.0
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG4721	904	consensus Serine/threonine protein kinase, contain	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
KOG0582	516	consensus Ste20-like serine/threonine protein kina	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	100.0
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	100.0
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	100.0
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	100.0
PTZ00263	329	protein kinase A catalytic subunit; Provisional	100.0
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	100.0
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	100.0
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	100.0
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	100.0
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	100.0
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	100.0
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	100.0
KOG0661	538	consensus MAPK related serine/threonine protein ki	100.0
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	100.0
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	100.0
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	100.0
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	100.0
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	100.0
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	100.0
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	100.0
KOG0589	426	consensus Serine/threonine protein kinase [General	100.0
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	100.0
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	100.0
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	100.0
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	100.0
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	100.0
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	100.0
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	100.0
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	100.0
PTZ00267	478	NIMA-related protein kinase; Provisional	100.0
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	100.0
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	100.0
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	100.0
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	100.0
KOG0605	550	consensus NDR and related serine/threonine kinases	100.0
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	100.0
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	100.0
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	100.0
KOG0694	694	consensus Serine/threonine protein kinase [Signal	100.0
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	100.0
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	100.0
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	100.0
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	100.0
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	100.0
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	100.0
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	100.0
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	100.0
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	100.0
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	100.0
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	100.0
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	100.0
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	100.0
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	100.0
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	100.0
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	100.0
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	100.0
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	100.0
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	100.0
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	100.0
KOG1989	738	consensus ARK protein kinase family [Signal transd	100.0
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	100.0
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	100.0
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	100.0
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	100.0
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	100.0
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	100.0
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	100.0
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	100.0
PLN00034	353	mitogen-activated protein kinase kinase; Provision	100.0
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	100.0
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	100.0
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	100.0
PHA03212	391	serine/threonine kinase US3; Provisional	100.0
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	100.0
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	100.0
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	100.0
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	100.0
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	100.0
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	100.0
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	100.0
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	100.0
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	100.0
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	100.0
KOG0201	467	consensus Serine/threonine protein kinase [Signal	100.0
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	100.0
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	100.0
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	100.0
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	100.0
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	100.0
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	100.0
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	100.0
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	100.0
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	100.0
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	100.0
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	100.0
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	100.0
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	100.0
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	100.0
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	100.0
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	100.0
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	100.0
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	100.0
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	100.0
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	100.0
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	100.0
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	100.0
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	100.0
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	100.0
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	100.0
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	100.0
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	100.0
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	100.0
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	100.0
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	100.0
PTZ00283	496	serine/threonine protein kinase; Provisional	100.0
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	100.0
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	100.0
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	100.0
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	100.0
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	100.0
KOG0596	677	consensus Dual specificity; serine/threonine and t	100.0
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	100.0
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	100.0
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	100.0
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	100.0
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	100.0
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	100.0
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	100.0
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	100.0
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	100.0
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	100.0
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	100.0
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	100.0
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	100.0
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	100.0
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	100.0
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	100.0
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	100.0
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	100.0
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	100.0
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	100.0
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	100.0
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	100.0
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	100.0
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	100.0
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	100.0
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	100.0
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	100.0
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	100.0
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	100.0
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	100.0
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	100.0
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	100.0
PHA03209	357	serine/threonine kinase US3; Provisional	100.0
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	100.0
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	100.0
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	100.0
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	100.0
KOG0610	459	consensus Putative serine/threonine protein kinase	100.0
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	100.0
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	100.0
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	100.0
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	100.0
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	100.0
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	100.0
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	100.0
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	100.0
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	100.0
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	100.0
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	100.0
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	100.0
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	100.0
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	100.0
PHA03211	461	serine/threonine kinase US3; Provisional	100.0
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	100.0
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	100.0
PTZ00036	440	glycogen synthase kinase; Provisional	100.0
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	100.0
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	100.0
KOG0611	668	consensus Predicted serine/threonine protein kinas	100.0
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	100.0
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	100.0
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	100.0
PHA03207	392	serine/threonine kinase US3; Provisional	100.0
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	100.0
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	100.0
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	100.0
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	100.0
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	100.0
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	100.0
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	100.0
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	100.0
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	100.0
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	100.0
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	100.0
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	100.0
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	100.0
PTZ00284	467	protein kinase; Provisional	100.0
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	100.0
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	100.0
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	100.0
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	100.0
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	100.0
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	100.0
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	100.0
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	100.0
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	100.0
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	100.0
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	100.0
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	100.0
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	100.0
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	100.0
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	100.0
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	100.0
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	100.0
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	100.0
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	100.0
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	100.0
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	100.0
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	100.0
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	100.0
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	100.0
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	100.0
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	100.0
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	100.0
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	100.0
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	100.0
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	100.0
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	100.0
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	100.0
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	100.0
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	100.0
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	100.0
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	100.0
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	100.0
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	100.0
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	100.0
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	100.0
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	100.0
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	100.0
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	100.0
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	100.0
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	100.0
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	100.0
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	100.0
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	100.0
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	100.0
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	100.0
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	100.0
KOG0577	948	consensus Serine/threonine protein kinase [Signal	100.0
PHA02882	294	putative serine/threonine kinase; Provisional	100.0
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	100.0
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	100.0
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	100.0
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	100.0
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	100.0
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	100.0
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	100.0
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	100.0
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	100.0
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	100.0
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	100.0
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	100.0
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	100.0
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	100.0
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	100.0
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	100.0
KOG4717	864	consensus Serine/threonine protein kinase [Signal	100.0
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	100.0
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	100.0
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	100.0
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	100.0
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	100.0
PTZ00266	1021	NIMA-related protein kinase; Provisional	100.0
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	100.0
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	100.0
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	100.0
PLN00009	294	cyclin-dependent kinase A; Provisional	100.0
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	100.0
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	100.0
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	100.0
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	100.0
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	100.0
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	100.0
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	100.0
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	100.0
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	100.0
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	100.0
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	100.0
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	100.0
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	100.0
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	100.0
PTZ00024	335	cyclin-dependent protein kinase; Provisional	100.0
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	100.0
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.98
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.98
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.98
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.98
PHA03210	501	serine/threonine kinase US3; Provisional	99.98
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.98
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.98
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.98
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.98
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.98
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.98
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.98
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.98
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.98
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.98
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.98
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.97
KOG0584	632	consensus Serine/threonine protein kinase [General	99.97
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.97
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.97
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.97
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.97
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.97
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.97
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.97
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.97
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.97
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.97
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.97
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.97
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.97
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.97
KOG3653	534	consensus Transforming growth factor beta/activin	99.97
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.97
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.97
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.97
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.97
KOG0586	596	consensus Serine/threonine protein kinase [General	99.97
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.97
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.97
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.97
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.97
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.97
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.97
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.96
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.96
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.96
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.96
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.96
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.96
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.96
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.96
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.96
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.95
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.95
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.95
PLN00181	793	protein SPA1-RELATED; Provisional	99.95
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.95
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.95
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.95
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.95
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.94
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.94
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.94
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.93
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.93
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.92
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.92
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.92
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.92
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.92
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.92
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.91
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.91
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.9
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.9
KOG1152	772	consensus Signal transduction serine/threonine kin	99.9
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.88
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.86
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.84
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.81
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.78
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.78
PRK09188	365	serine/threonine protein kinase; Provisional	99.77
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.76
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.75
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.74
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.74
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.74
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.73
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.7
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.7
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.67
PRK12274	218	serine/threonine protein kinase; Provisional	99.62
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.61
KOG1266	458	consensus Protein kinase [Signal transduction mech	99.59
smart00090	237	RIO RIO-like kinase.	99.56
PRK14879	211	serine/threonine protein kinase; Provisional	99.56
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.54
PRK10345	210	hypothetical protein; Provisional	99.53
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.52
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.51
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.45
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.38
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.31
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.29
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.26
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.16
KOG1243	690	consensus Protein kinase [General function predict	99.1
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.06
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.98
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	98.91
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	98.87
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	98.84
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	98.74
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.73
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.69
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.64
KOG3087	229	consensus Serine/threonine protein kinase [General	98.58
COG4248	637	Uncharacterized protein with protein kinase and he	98.57
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	98.57
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	98.52
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.51
PRK09902	216	hypothetical protein; Provisional	98.44
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.31
KOG1235	538	consensus Predicted unusual protein kinase [Genera	98.13
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	98.11
COG0661	517	AarF Predicted unusual protein kinase [General fun	98.05
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	97.95
COG0478	304	RIO-like serine/threonine protein kinase fused to	97.86
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	97.74
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	97.4
KOG0576	829	consensus Mitogen-activated protein kinase kinase	97.31
PF01636	239	APH: Phosphotransferase enzyme family This family	97.11
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	97.1
KOG1093	725	consensus Predicted protein kinase (contains TBC a	97.01
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	96.93
KOG1826	2724	consensus Ras GTPase activating protein RasGAP/neu	96.76
KOG2270	520	consensus Serine/threonine protein kinase involved	96.22
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	96.09
PLN02876	822	acyl-CoA dehydrogenase	95.88
KOG2268	465	consensus Serine/threonine protein kinase [Signal	95.82
PRK09550	401	mtnK methylthioribose kinase; Reviewed	95.67
PRK10593	297	hypothetical protein; Provisional	95.55
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	95.28
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	95.23
COG5072	488	ALK1 Serine/threonine kinase of the haspin family	94.85
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	93.99
PLN02756	418	S-methyl-5-thioribose kinase	93.71
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	92.75
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	92.02
PF07387	308	Seadorna_VP7: Seadornavirus VP7; InterPro: IPR0099	91.76
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	91.32
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	91.11
PRK05231	319	homoserine kinase; Provisional	90.97
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	90.79
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	90.49
PRK10271	188	thiK thiamine kinase; Provisional	89.06
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	88.83
COG2334	331	Putative homoserine kinase type II (protein kinase	87.29
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	86.95
KOG1236	565	consensus Predicted unusual protein kinase [Genera	86.92
COG3001	286	Uncharacterized protein conserved in bacteria [Fun	85.81
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	85.78
smart00587	196	CHK ZnF_C4 abd HLH domain containing kinases domai	84.94
TIGR02904	309	spore_ysxE spore coat protein YsxE. Members of thi	84.38
COG0510	269	ycfN Thiamine kinase and related kinases [Coenzyme	84.3
TIGR01767	370	MTRK 5-methylthioribose kinase. This enzyme is inv	83.81
PLN02236	344	choline kinase	83.39

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.8e-47  Score=328.02  Aligned_cols=244  Identities=32%  Similarity=0.533  Sum_probs=209.6

Q ss_pred             ccccceeeecccCCCCCeeecc---------chhhhHHHHhHhhhccccccccCCceeeeceeeeecC-ceeEEEeecCC
Q 044568            4 TKLSNFYRSSFNARNSPWISRV---------SWTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTS-VSGKIERPVRN   73 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~---------~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~-~~~lV~E~~~~   73 (257)
                      +.|+.||+|.+.++..++||+.         +|.+|++.++         +++|+|++++.|+|...+ +.+||+|||++
T Consensus        86 Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls---------~l~H~Nlv~LlGyC~e~~~~~~LVYEym~n  156 (361)
T KOG1187|consen   86 GGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILS---------RLRHPNLVKLLGYCLEGGEHRLLVYEYMPN  156 (361)
T ss_pred             CCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHh---------cCCCcCcccEEEEEecCCceEEEEEEccCC
Confidence            4588999999999988898843         4566666666         999999999999999999 59999999999


Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC-Ccc--c
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE-DFV--I  150 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~-~~~--~  150 (257)
                      |||.++|+......|+|.++.+|+.++|.||.|||+.+.+.|+|||||++|||+|+++.+||+|||+++.... ...  .
T Consensus       157 GsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aKlsDFGLa~~~~~~~~~~~~  236 (361)
T KOG1187|consen  157 GSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAKLSDFGLAKLGPEGDTSVST  236 (361)
T ss_pred             CCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCEEccCccCcccCCccccceee
Confidence            9999999973322899999999999999999999999877899999999999999999999999999975543 222  2


Q ss_pred             c-cCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC----CC
Q 044568          151 D-KRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT----KV  225 (257)
Q Consensus       151 ~-~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  225 (257)
                      . .||.+|++||+...+..+.++||||||++++|++||+.|.+... ......+..|+.+......+..++|+.    ..
T Consensus       237 ~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~-~~~~~~l~~w~~~~~~~~~~~eiiD~~l~~~~~  315 (361)
T KOG1187|consen  237 TVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSR-PRGELSLVEWAKPLLEEGKLREIVDPRLKEGEY  315 (361)
T ss_pred             ecCCCCccCChhhhccCCcCcccccccchHHHHHHHhCCcccCCCC-CcccccHHHHHHHHHHCcchhheeCCCccCCCC
Confidence            2 79999999999999999999999999999999999999887553 222334778888888888888888877    23


Q ss_pred             CH-HHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          226 DK-KNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       226 ~~-~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      +. +....+..++.+|++.+|++|| |.||+++|
T Consensus       316 ~~~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv~~L  349 (361)
T KOG1187|consen  316 PDEKEVKKLAELALRCLRPDPKERPTMSQVVKEL  349 (361)
T ss_pred             ChHHHHHHHHHHHHHHcCcCCCcCcCHHHHHHHH
Confidence            33 5788899999999999999999 99998875

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-45  Score=315.47  Aligned_cols=229  Identities=26%  Similarity=0.365  Sum_probs=192.8

Q ss_pred             ccccceeeecccCCCCCeeecc-----------chhhhHHHHhHhhhccccccccCCceeeeceeeeecC-ceeEEEeec
Q 044568            4 TKLSNFYRSSFNARNSPWISRV-----------SWTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTS-VSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~-----------~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~-~~~lV~E~~   71 (257)
                      +.++.||+|++.....+++|.+           +|.+|+..+.         +++|+|||++.|.+.... ..+||||||
T Consensus        52 G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~---------~l~HpNIV~f~G~~~~~~~~~~iVtEy~  122 (362)
T KOG0192|consen   52 GSFGTVYKGKWRGTDVVAVKIISDPDFDDESRKAFRREASLLS---------RLRHPNIVQFYGACTSPPGSLCIVTEYM  122 (362)
T ss_pred             CCceeEEEEEeCCceeEEEEEecchhcChHHHHHHHHHHHHHH---------hCCCCCeeeEEEEEcCCCCceEEEEEeC
Confidence            5689999999998887888754           4677777777         899999999999999988 899999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCC-eeeccCCCCceeeCCCC-ceEEeeecccccCC---C
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPP-ILHCDIKPQNILMDEFW-TAKILDFGLAKLPN---E  146 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~-i~h~dl~~~nil~~~~~-~~kl~dfg~~~~~~---~  146 (257)
                      ++|+|.+++++.....+++..++.++.||+.|+.|||++   + |+|||||+.|+|++.+. ++||+|||+++...   .
T Consensus       123 ~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~~---~~iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~~~~  199 (362)
T KOG0192|consen  123 PGGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHSE---GPIIHRDLKSDNILVDLKGKTLKIADFGLSREKVISKT  199 (362)
T ss_pred             CCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcC---CCeeecccChhhEEEcCCCCEEEECCCccceeeccccc
Confidence            999999999864478899999999999999999999999   8 99999999999999997 99999999998654   3


Q ss_pred             CcccccCCCCccCccccc--CCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCC
Q 044568          147 DFVIDKRDKGYMAPECYK--RTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTK  224 (257)
Q Consensus       147 ~~~~~~~~~~~~aPE~~~--~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (257)
                      ......||..|+|||.+.  +..|+.|+||||||+++|||+||+.||.....    .....   .      ...--....
T Consensus       200 ~~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~----~~~~~---~------v~~~~~Rp~  266 (362)
T KOG0192|consen  200 SMTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFEDLAP----VQVAS---A------VVVGGLRPP  266 (362)
T ss_pred             cccCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCCCCCH----HHHHH---H------HHhcCCCCC
Confidence            445578999999999999  66899999999999999999999999986622    11100   0      000111113


Q ss_pred             CCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          225 VDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       225 ~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      .+..+++.+..++.+||+.||++|| +.||+..|
T Consensus       267 ~p~~~~~~l~~l~~~CW~~dp~~RP~f~ei~~~l  300 (362)
T KOG0192|consen  267 IPKECPPHLSSLMERCWLVDPSRRPSFLEIVSRL  300 (362)
T ss_pred             CCccCCHHHHHHHHHhCCCCCCcCCCHHHHHHHH
Confidence            4555889999999999999999999 99998764

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-44  Score=310.48  Aligned_cols=225  Identities=21%  Similarity=0.320  Sum_probs=192.1

Q ss_pred             cccccceeeecccCCCCCeeeccc--------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCC
Q 044568            3 CTKLSNFYRSSFNARNSPWISRVS--------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNG   74 (257)
Q Consensus         3 ~~~~~~~y~~~~~~~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~g   74 (257)
                      .+.|+.|+.|+++....+++|.+.        |.+|++++.         +++|++||++.+++..++..+||||||+.|
T Consensus       216 ~G~FG~V~~g~~~~~~~vavk~ik~~~m~~~~f~~Ea~iMk---------~L~H~~lV~l~gV~~~~~piyIVtE~m~~G  286 (468)
T KOG0197|consen  216 SGQFGEVWLGKWNGSTKVAVKTIKEGSMSPEAFLREAQIMK---------KLRHEKLVKLYGVCTKQEPIYIVTEYMPKG  286 (468)
T ss_pred             CCccceEEEEEEcCCCcccceEEeccccChhHHHHHHHHHH---------hCcccCeEEEEEEEecCCceEEEEEecccC
Confidence            368999999999999888876533        678888888         999999999999999999999999999999


Q ss_pred             CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-ccccC
Q 044568           75 SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-VIDKR  153 (257)
Q Consensus        75 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-~~~~~  153 (257)
                      ||.++|+......+...+.+.++.|||+|++||.++   ++|||||.++|||++++..+||+|||+++...++. ....+
T Consensus       287 sLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLes~---~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~d~~Y~~~~~  363 (468)
T KOG0197|consen  287 SLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLESK---NYIHRDLAARNILVDEDLVVKISDFGLARLIGDDEYTASEG  363 (468)
T ss_pred             cHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHhC---CccchhhhhhheeeccCceEEEcccccccccCCCceeecCC
Confidence            999999976778899999999999999999999999   99999999999999999999999999999544433 12222


Q ss_pred             ---CCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc-CC--CCC
Q 044568          154 ---DKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR-GT--KVD  226 (257)
Q Consensus       154 ---~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~  226 (257)
                         ..-|.|||++..+.++.+|||||||++|||++| |+.||....                 ..+....++ +.  +.|
T Consensus       364 ~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~~ms-----------------n~ev~~~le~GyRlp~P  426 (468)
T KOG0197|consen  364 GKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVPYPGMS-----------------NEEVLELLERGYRLPRP  426 (468)
T ss_pred             CCCCceecCHHHHhhCCcccccceeehhhhHHHHhccCCCCCCCCC-----------------HHHHHHHHhccCcCCCC
Confidence               234999999999999999999999999999999 899986441                 122222233 22  557


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCC-hHHHHHh
Q 044568          227 KKNLENLVKVGLWCVQDEPALRP-MKCAVMM  256 (257)
Q Consensus       227 ~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~  256 (257)
                      ..|+..+.+++..||+.+|++|| ++.+...
T Consensus       427 ~~CP~~vY~lM~~CW~~~P~~RPtF~~L~~~  457 (468)
T KOG0197|consen  427 EGCPDEVYELMKSCWHEDPEDRPTFETLREV  457 (468)
T ss_pred             CCCCHHHHHHHHHHhhCCcccCCCHHHHHHH
Confidence            78999999999999999999999 9877654

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.1e-42  Score=303.98  Aligned_cols=222  Identities=18%  Similarity=0.227  Sum_probs=189.9

Q ss_pred             ccccceeeecc-cCCCCCeeeccc------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSF-NARNSPWISRVS------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~-~~~~~~~i~~~~------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.||.+|+++. ..++.+|+|.+.            ..+|++...         .+.|+|||++.+.+.+.+..|||.|+
T Consensus        29 GgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr---------~L~HpnIV~f~~~FEDs~nVYivLEL   99 (592)
T KOG0575|consen   29 GGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHR---------SLKHPNIVQFYHFFEDSNNVYIVLEL   99 (592)
T ss_pred             CcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHH---------hcCCCcEEeeeeEeecCCceEEEEEe
Confidence            47999999997 778888887654            245555555         99999999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC---CC
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN---ED  147 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~---~~  147 (257)
                      |.+++|..++.  ..+.+++.+++.++.||+.|+.|||++   +|+|||||..|++++++.++||+|||++....   ..
T Consensus       100 C~~~sL~el~K--rrk~ltEpEary~l~QIv~GlkYLH~~---~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~~~Er  174 (592)
T KOG0575|consen  100 CHRGSLMELLK--RRKPLTEPEARYFLRQIVEGLKYLHSL---GIIHRDLKLGNLFLNENMNVKIGDFGLATQLEYDGER  174 (592)
T ss_pred             cCCccHHHHHH--hcCCCCcHHHHHHHHHHHHHHHHHHhc---CceecccchhheeecCcCcEEecccceeeeecCcccc
Confidence            99999999998  678899999999999999999999999   99999999999999999999999999998655   55


Q ss_pred             cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC-CCC
Q 044568          148 FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT-KVD  226 (257)
Q Consensus       148 ~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  226 (257)
                      ....+|||.|.|||++.+...+..+||||+||++|.++.|++||+...-.                ..+..+-... .+|
T Consensus       175 k~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk~vk----------------ety~~Ik~~~Y~~P  238 (592)
T KOG0575|consen  175 KKTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETKTVK----------------ETYNKIKLNEYSMP  238 (592)
T ss_pred             cceecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcccchHH----------------HHHHHHHhcCcccc
Confidence            67889999999999999999999999999999999999999999855111                1111111111 344


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          227 KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       227 ~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ........+||..+|+.||.+|| +++|+.
T Consensus       239 ~~ls~~A~dLI~~lL~~~P~~Rpsl~~vL~  268 (592)
T KOG0575|consen  239 SHLSAEAKDLIRKLLRPNPSERPSLDEVLD  268 (592)
T ss_pred             cccCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence            45667788999999999999999 999975

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-42  Score=287.75  Aligned_cols=228  Identities=21%  Similarity=0.247  Sum_probs=185.9

Q ss_pred             cccccceeeecccCCCC-Ceeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecC-ceeEEEee
Q 044568            3 CTKLSNFYRSSFNARNS-PWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTS-VSGKIERP   70 (257)
Q Consensus         3 ~~~~~~~y~~~~~~~~~-~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~-~~~lV~E~   70 (257)
                      ++..++||+..+..+.. .|+|.+.          ..+|++++.         +..|++||.+.+.+.... ...|+|||
T Consensus        89 ~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~---------~~~spyIV~~ygaF~~~~~~isI~mEY  159 (364)
T KOG0581|consen   89 SGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILR---------SCQSPYIVGFYGAFYSNGEEISICMEY  159 (364)
T ss_pred             cCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHh---------hCCCCCeeeEeEEEEeCCceEEeehhh
Confidence            35678999999775554 4566652          345555555         678999999999999988 59999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhh-CCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC-c
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHD-ECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED-F  148 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~-~  148 (257)
                      |++|||++++.  ..+++++...-+++.++++||.|||+ +   +|+||||||+|+|+...|.+||+|||.+...... .
T Consensus       160 MDgGSLd~~~k--~~g~i~E~~L~~ia~~VL~GL~YLh~~~---~IIHRDIKPsNlLvNskGeVKicDFGVS~~lvnS~a  234 (364)
T KOG0581|consen  160 MDGGSLDDILK--RVGRIPEPVLGKIARAVLRGLSYLHEER---KIIHRDIKPSNLLVNSKGEVKICDFGVSGILVNSIA  234 (364)
T ss_pred             cCCCCHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHHhhcc---CeeeccCCHHHeeeccCCCEEeccccccHHhhhhhc
Confidence            99999999998  44779999999999999999999996 7   9999999999999999999999999999865444 3


Q ss_pred             ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc--CCCCC
Q 044568          149 VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR--GTKVD  226 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  226 (257)
                      .+..||..|||||.+.+..|+.++||||||+.++|+++|+.||....+....     |.      .-+..+..  +...+
T Consensus       235 ~tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~~~~~~~-----~~------~Ll~~Iv~~ppP~lP  303 (364)
T KOG0581|consen  235 NTFVGTSAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPYPPPNPPYLD-----IF------ELLCAIVDEPPPRLP  303 (364)
T ss_pred             ccccccccccChhhhcCCcCCcccceecccHHHHHHhhCCCCCCCcCCCCCC-----HH------HHHHHHhcCCCCCCC
Confidence            6779999999999999999999999999999999999999999754111110     00      11122333  12334


Q ss_pred             HH-HHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          227 KK-NLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       227 ~~-~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .. +.+++..++..||++||.+|| +.|+++
T Consensus       304 ~~~fS~ef~~FV~~CL~Kdp~~R~s~~qLl~  334 (364)
T KOG0581|consen  304 EGEFSPEFRSFVSCCLRKDPSERPSAKQLLQ  334 (364)
T ss_pred             cccCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence            43 788999999999999999999 999875

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=3.8e-42  Score=288.22  Aligned_cols=177  Identities=20%  Similarity=0.287  Sum_probs=156.9

Q ss_pred             ccccceeeecccCCC-CCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            4 TKLSNFYRSSFNARN-SPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~-~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      +.|++||+|++.... .++||.+.-           ..|++.+.         .+.|+|||.+.......+..+||||||
T Consensus        21 GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLk---------el~H~nIV~l~d~~~~~~~i~lVMEyC   91 (429)
T KOG0595|consen   21 GSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILK---------ELKHPNIVRLLDCIEDDDFIYLVMEYC   91 (429)
T ss_pred             cceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHH---------hcCCcceeeEEEEEecCCeEEEEEEeC
Confidence            578999999966554 556776542           45566666         899999999999999999999999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCC------CceEEeeecccccCC
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF------WTAKILDFGLAKLPN  145 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~------~~~kl~dfg~~~~~~  145 (257)
                      .||+|.++|+  ..+++++.+++.++.||+.|+++||++   +|+||||||.|||++..      ..+||+|||+++...
T Consensus        92 ~gGDLs~yi~--~~~~l~e~t~r~Fm~QLA~alq~L~~~---~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L~  166 (429)
T KOG0595|consen   92 NGGDLSDYIR--RRGRLPEATARHFMQQLASALQFLHEN---NIIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFLQ  166 (429)
T ss_pred             CCCCHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCcceEEeccCCCCCCCceEEecccchhhhCC
Confidence            9999999998  566899999999999999999999999   99999999999999865      568999999999766


Q ss_pred             CCc--ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcC
Q 044568          146 EDF--VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEID  194 (257)
Q Consensus       146 ~~~--~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~  194 (257)
                      ...  ...+|++.|||||++...+|+.|+|+||.|+++|++++|+.||+..
T Consensus       167 ~~~~a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~a~  217 (429)
T KOG0595|consen  167 PGSMAETLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPFDAE  217 (429)
T ss_pred             chhHHHHhhCCccccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCcccc
Confidence            443  5668999999999999999999999999999999999999999854

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2e-41  Score=271.91  Aligned_cols=236  Identities=16%  Similarity=0.187  Sum_probs=185.7

Q ss_pred             ccccceeeec-ccCCCCCeeeccchhhh--HHHHh-HhhhccccccccCCceeeecee-eeecCc-eeEEEeecCCCCHH
Q 044568            4 TKLSNFYRSS-FNARNSPWISRVSWTAD--IEVLS-VAMRGSKCTRIRGGLLLNVPVR-AKLTSV-SGKIERPVRNGSLT   77 (257)
Q Consensus         4 ~~~~~~y~~~-~~~~~~~~i~~~~~~~~--~~~~~-~~~~~~~~~~~~h~~i~~~~~~-~~~~~~-~~lV~E~~~~gsL~   77 (257)
                      ++|+.|||+. +.++..++.|+++|...  .+--. +...+ .+..+.|+|||+..+. +....+ .+||||||.+|+|.
T Consensus        30 GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~-lLkQL~HpNIVqYy~~~f~~~~evlnivmE~c~~GDLs  108 (375)
T KOG0591|consen   30 GSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEIS-LLKQLNHPNIVQYYAHSFIEDNEVLNIVMELCDAGDLS  108 (375)
T ss_pred             CcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHH-HHHhcCCchHHHHHHHhhhccchhhHHHHHhhcccCHH
Confidence            5799999999 78888889998886221  11111 12222 4458999999999994 444444 78999999999999


Q ss_pred             HHHhcc--CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCC--eeeccCCCCceeeCCCCceEEeeecccccCCCCc---cc
Q 044568           78 DIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPP--ILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF---VI  150 (257)
Q Consensus        78 ~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~--i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~---~~  150 (257)
                      ++|...  +.+.+++.++++++.|++.||.++|++ .++  ++||||||.||+++.+|.+||+|||+++......   .+
T Consensus       109 qmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~-~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r~l~s~~tfA~S  187 (375)
T KOG0591|consen  109 QMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSK-IPRGTVMHRDIKPANIFLTANGVVKLGDFGLGRFLSSKTTFAHS  187 (375)
T ss_pred             HHHHHHHhccccCchHHHHHHHHHHHHHHHHHhcc-ccccceeeccCcchheEEcCCCceeeccchhHhHhcchhHHHHh
Confidence            999633  677899999999999999999999994 235  9999999999999999999999999999765543   56


Q ss_pred             ccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCC-HHH
Q 044568          151 DKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVD-KKN  229 (257)
Q Consensus       151 ~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  229 (257)
                      ..|||.||+||.+...+|+.+|||||+||++|||+.-++||.++    ....++.         .+... +-.+.| .-.
T Consensus       188 ~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~----n~~~L~~---------KI~qg-d~~~~p~~~Y  253 (375)
T KOG0591|consen  188 LVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGD----NLLSLCK---------KIEQG-DYPPLPDEHY  253 (375)
T ss_pred             hcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcccc----cHHHHHH---------HHHcC-CCCCCcHHHh
Confidence            79999999999999999999999999999999999999999866    1111211         11111 111233 556


Q ss_pred             HHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          230 LENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       230 ~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ...+..++..|+..||+.|| ...++.
T Consensus       254 S~~l~~li~~ci~vd~~~RP~t~~~v~  280 (375)
T KOG0591|consen  254 STDLRELINMCIAVDPEQRPDTVPYVQ  280 (375)
T ss_pred             hhHHHHHHHHHccCCcccCCCcchHHH
Confidence            78899999999999999999 665554

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4.4e-41  Score=281.96  Aligned_cols=204  Identities=23%  Similarity=0.291  Sum_probs=169.1

Q ss_pred             hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHH
Q 044568           27 WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILY  106 (257)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~  106 (257)
                      ..+|++++.         ++.|||||++.+++...+..||||||++||.|.+.+-  ..+.+.+...+.++.|++.|+.|
T Consensus       223 v~~EieILk---------kL~HP~IV~~~d~f~~~ds~YmVlE~v~GGeLfd~vv--~nk~l~ed~~K~~f~Qll~avkY  291 (475)
T KOG0615|consen  223 VQNEIEILK---------KLSHPNIVRIKDFFEVPDSSYMVLEYVEGGELFDKVV--ANKYLREDLGKLLFKQLLTAVKY  291 (475)
T ss_pred             hHHHHHHHH---------hcCCCCEEEEeeeeecCCceEEEEEEecCccHHHHHH--hccccccchhHHHHHHHHHHHHH
Confidence            368888888         9999999999999999999999999999999999997  66778888999999999999999


Q ss_pred             HhhCCCCCeeeccCCCCceeeCCC---CceEEeeecccccCC--CCcccccCCCCccCcccccCCCC---CccccchhHH
Q 044568          107 LHDECEPPILHCDIKPQNILMDEF---WTAKILDFGLAKLPN--EDFVIDKRDKGYMAPECYKRTPI---SVKADVYGYG  178 (257)
Q Consensus       107 lh~~~~~~i~h~dl~~~nil~~~~---~~~kl~dfg~~~~~~--~~~~~~~~~~~~~aPE~~~~~~~---~~~~Di~s~G  178 (257)
                      ||++   ||+||||||+|||+..+   ..+|++|||+++..+  ..+...+||+.|.|||++.+..+   ..+.|+||+|
T Consensus       292 LH~~---GI~HRDiKPeNILl~~~~e~~llKItDFGlAK~~g~~sfm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlG  368 (475)
T KOG0615|consen  292 LHSQ---GIIHRDIKPENILLSNDAEDCLLKITDFGLAKVSGEGSFMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLG  368 (475)
T ss_pred             HHHc---CcccccCCcceEEeccCCcceEEEecccchhhccccceehhhhcCCccccChhheecCCeecccchheeeecc
Confidence            9999   99999999999999876   789999999999864  44578899999999999986643   3478999999


Q ss_pred             HHHHHHHhcCCCCCcCCCChh-hHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          179 IVLLETICCRKNMEIDASKPE-EIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       179 ~~l~el~~g~~pf~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      |+||-+++|.+||.....+.. ...+..-.           ..-......+..++..+|+.++|..||++|| +.|+++
T Consensus       369 cvLfvcLsG~pPFS~~~~~~sl~eQI~~G~-----------y~f~p~~w~~Iseea~dlI~~mL~VdP~~R~s~~eaL~  436 (475)
T KOG0615|consen  369 CVLFVCLSGYPPFSEEYTDPSLKEQILKGR-----------YAFGPLQWDRISEEALDLINWMLVVDPENRPSADEALN  436 (475)
T ss_pred             ceEEEEeccCCCcccccCCccHHHHHhcCc-----------ccccChhhhhhhHHHHHHHHHhhEeCcccCcCHHHHhc
Confidence            999999999999986633321 00000000           0001133455667889999999999999999 999875

>PHA02988 hypothetical protein; Provisional

Probab=100.00  E-value=1.7e-39  Score=274.16  Aligned_cols=227  Identities=19%  Similarity=0.233  Sum_probs=180.1

Q ss_pred             ccccceeeecccCCCCCeeeccch------------hhhHHHHhHhhhccccccccCCceeeeceeeee----cCceeEE
Q 044568            4 TKLSNFYRSSFNARNSPWISRVSW------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL----TSVSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~----~~~~~lV   67 (257)
                      +.+..||+|++ +++.+++|....            .+|++.+.         +++|+|++++.+.+..    ....++|
T Consensus        31 g~~~~v~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~---------~l~h~nIv~~~g~~~~~~~~~~~~~lv  100 (283)
T PHA02988         31 NDQNSIYKGIF-NNKEVIIRTFKKFHKGHKVLIDITENEIKNLR---------RIDSNNILKIYGFIIDIVDDLPRLSLI  100 (283)
T ss_pred             CCceEEEEEEE-CCEEEEEEeccccccccHHHHHHHHHHHHHHH---------hcCCCCEEEEeeeEEecccCCCceEEE
Confidence            46788999998 577888886542            24444444         8899999999998876    3467899


Q ss_pred             EeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC
Q 044568           68 ERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED  147 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~  147 (257)
                      |||+++|+|.+++.  ....+++.....++.|++.|+.|||+..  +++||||+|+||++++++.+|++|||+++.....
T Consensus       101 ~Ey~~~g~L~~~l~--~~~~~~~~~~~~i~~~i~~~l~~lH~~~--~~~Hrdlkp~nill~~~~~~kl~dfg~~~~~~~~  176 (283)
T PHA02988        101 LEYCTRGYLREVLD--KEKDLSFKTKLDMAIDCCKGLYNLYKYT--NKPYKNLTSVSFLVTENYKLKIICHGLEKILSSP  176 (283)
T ss_pred             EEeCCCCcHHHHHh--hCCCCChhHHHHHHHHHHHHHHHHHhcC--CCCCCcCChhhEEECCCCcEEEcccchHhhhccc
Confidence            99999999999997  4567899999999999999999999831  8889999999999999999999999998865554


Q ss_pred             cccccCCCCccCcccccC--CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCC
Q 044568          148 FVIDKRDKGYMAPECYKR--TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKV  225 (257)
Q Consensus       148 ~~~~~~~~~~~aPE~~~~--~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (257)
                      .....++..|+|||.+.+  ..++.++||||||+++|||++|+.||.......   ......     ...     .....
T Consensus       177 ~~~~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~~~~~---~~~~i~-----~~~-----~~~~~  243 (283)
T PHA02988        177 PFKNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFENLTTKE---IYDLII-----NKN-----NSLKL  243 (283)
T ss_pred             cccccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCCCCCHHH---HHHHHH-----hcC-----CCCCC
Confidence            455667888999999976  678999999999999999999999997542111   000000     000     01123


Q ss_pred             CHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          226 DKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       226 ~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      +...++.+.+++.+||+.||++|| ++|+++.|
T Consensus       244 ~~~~~~~l~~li~~cl~~dp~~Rps~~ell~~l  276 (283)
T PHA02988        244 PLDCPLEIKCIVEACTSHDSIKRPNIKEILYNL  276 (283)
T ss_pred             CCcCcHHHHHHHHHHhcCCcccCcCHHHHHHHH
Confidence            334667899999999999999999 99998764

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.2e-40  Score=298.21  Aligned_cols=224  Identities=18%  Similarity=0.232  Sum_probs=183.6

Q ss_pred             cccceeeecccCCC------CCeeec----------cchhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEE
Q 044568            5 KLSNFYRSSFNARN------SPWISR----------VSWTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIE   68 (257)
Q Consensus         5 ~~~~~y~~~~~~~~------~~~i~~----------~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~   68 (257)
                      -|+.||+|+...-.      .++||.          .+|++|++.+.         .+.|+|||++.|.+..++..+||+
T Consensus       498 aFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla---------~l~H~nIVrLlGVC~~~~P~~MvF  568 (774)
T KOG1026|consen  498 AFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLA---------ELQHPNIVRLLGVCREGDPLCMVF  568 (774)
T ss_pred             hhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHH---------hccCCCeEEEEEEEccCCeeEEEE
Confidence            46778888754433      334543          34777777777         999999999999999999999999


Q ss_pred             eecCCCCHHHHHhccC------------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEe
Q 044568           69 RPVRNGSLTDIIFCSA------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKIL  136 (257)
Q Consensus        69 E~~~~gsL~~~l~~~~------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~  136 (257)
                      |||.+|+|.++|+...            +..|+..+.++++.|||.|+.||-++   ..+||||..+|+|++++..+||+
T Consensus       569 EYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~---~FVHRDLATRNCLVge~l~VKIs  645 (774)
T KOG1026|consen  569 EYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSH---HFVHRDLATRNCLVGENLVVKIS  645 (774)
T ss_pred             EecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhC---cccccchhhhhceeccceEEEec
Confidence            9999999999998431            22388899999999999999999999   99999999999999999999999


Q ss_pred             eecccccCCCCcccc-----cCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHh
Q 044568          137 DFGLAKLPNEDFVID-----KRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKC  210 (257)
Q Consensus       137 dfg~~~~~~~~~~~~-----~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~  210 (257)
                      |||+++-.-......     .-..+|||||.+..++|+.+||||||||+|||+++ |..||.+-..+             
T Consensus       646 DfGLsRdiYssDYYk~~~~t~lPIRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~glSn~-------------  712 (774)
T KOG1026|consen  646 DFGLSRDIYSSDYYKVRGNTLLPIRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYGLSNQ-------------  712 (774)
T ss_pred             ccccchhhhhhhhhcccCCceeeeecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCcccccchH-------------
Confidence            999998543333222     22356999999999999999999999999999999 99999755222             


Q ss_pred             hhhhhhhhhhcCC---CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          211 FINRELNKLVRGT---KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       211 ~~~~~~~~~~~~~---~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                          +.-+.+..+   +.|+.++.++..|+..||+.+|.+|| ++||...|
T Consensus       713 ----EVIe~i~~g~lL~~Pe~CP~~vY~LM~~CW~~~P~~RPsF~eI~~~L  759 (774)
T KOG1026|consen  713 ----EVIECIRAGQLLSCPENCPTEVYSLMLECWNENPKRRPSFKEIHSRL  759 (774)
T ss_pred             ----HHHHHHHcCCcccCCCCCCHHHHHHHHHHhhcCcccCCCHHHHHHHH
Confidence                222222222   56888999999999999999999999 99998764

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-39  Score=273.27  Aligned_cols=227  Identities=20%  Similarity=0.243  Sum_probs=181.6

Q ss_pred             ccccceeeecccC-CCCCeeeccch---------hhhHHHHhHhhhccccccccCCceeeeceeeeecC--ceeEEEeec
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW---------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTS--VSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~---------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~--~~~lV~E~~   71 (257)
                      +.++.||.++..+ ++..++|.++.         .+|++.+.         ++.|+|||+..|.....+  ..++.|||+
T Consensus        28 Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~---------~l~~p~IV~~~G~~~~~~~~~~~i~mEy~   98 (313)
T KOG0198|consen   28 GSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILS---------RLNHPNIVQYYGSSSSRENDEYNIFMEYA   98 (313)
T ss_pred             ccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHH---------hCCCCCEEeeCCccccccCeeeEeeeecc
Confidence            4678999999776 77788888776         45555555         888999999999755444  689999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCC-CCceEEeeecccccCCC----
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE-FWTAKILDFGLAKLPNE----  146 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~-~~~~kl~dfg~~~~~~~----  146 (257)
                      ++|||.+++.+..+ .|++..++.++.|+++||.|||++   +++|+||||+|||++. ++.+||+|||.+.....    
T Consensus        99 ~~GsL~~~~~~~g~-~l~E~~v~~ytr~iL~GL~ylHs~---g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~~~~~  174 (313)
T KOG0198|consen   99 PGGSLSDLIKRYGG-KLPEPLVRRYTRQILEGLAYLHSK---GIVHCDIKPANILLDPSNGDVKLADFGLAKKLESKGTK  174 (313)
T ss_pred             CCCcHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHHHhC---CEeccCcccceEEEeCCCCeEEeccCcccccccccccc
Confidence            99999999987444 899999999999999999999999   9999999999999999 79999999998876542    


Q ss_pred             --CcccccCCCCccCcccccCCC-CCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC
Q 044568          147 --DFVIDKRDKGYMAPECYKRTP-ISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  223 (257)
Q Consensus       147 --~~~~~~~~~~~~aPE~~~~~~-~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (257)
                        ......||+.|+|||++..+. ...++||||+||++.||+||+.||....      ....+.......    .  ...
T Consensus       175 ~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~~------~~~~~~~~ig~~----~--~~P  242 (313)
T KOG0198|consen  175 SDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSEFF------EEAEALLLIGRE----D--SLP  242 (313)
T ss_pred             ccccccccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcchhhc------chHHHHHHHhcc----C--CCC
Confidence              234578899999999998643 3459999999999999999999997420      001111111111    1  111


Q ss_pred             CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          224 KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       224 ~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .++...+....+++..|++.||++|| |+|+++
T Consensus       243 ~ip~~ls~~a~~Fl~~C~~~~p~~Rpta~eLL~  275 (313)
T KOG0198|consen  243 EIPDSLSDEAKDFLRKCFKRDPEKRPTAEELLE  275 (313)
T ss_pred             CCCcccCHHHHHHHHHHhhcCcccCcCHHHHhh
Confidence            45666778899999999999999999 999975

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-39  Score=303.30  Aligned_cols=234  Identities=21%  Similarity=0.295  Sum_probs=190.7

Q ss_pred             ccccceeeecccCCCC------Ceeeccch-hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCH
Q 044568            4 TKLSNFYRSSFNARNS------PWISRVSW-TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSL   76 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~------~~i~~~~~-~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL   76 (257)
                      +.|++||+|.+.+...      +++|.+.. ..+-++..+...+..+.++.|+||+++.|++......+|++|||++|+|
T Consensus       703 G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~~~i~leyM~gGDL  782 (1025)
T KOG1095|consen  703 GAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSGPPLILLEYMEGGDL  782 (1025)
T ss_pred             ccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCCCcEEEehhcccCcH
Confidence            5799999999887777      56666554 3344455555555567799999999999999999999999999999999


Q ss_pred             HHHHhcc-----CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeeccccc-CCCCccc
Q 044568           77 TDIIFCS-----AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKL-PNEDFVI  150 (257)
Q Consensus        77 ~~~l~~~-----~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~-~~~~~~~  150 (257)
                      ..+|++.     ....++..+.+.++.|||.|+.||+++   +.+||||.++|+|++....+|++|||+++- .......
T Consensus       783 ~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~---~fvHRDLAaRNCLL~~~r~VKIaDFGlArDiy~~~yyr  859 (1025)
T KOG1095|consen  783 LSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESK---HFVHRDLAARNCLLDERRVVKIADFGLARDIYDKDYYR  859 (1025)
T ss_pred             HHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhC---CCcCcchhhhheeecccCcEEEcccchhHhhhhchhee
Confidence            9999973     267789999999999999999999999   999999999999999999999999999983 3322222


Q ss_pred             cc----CCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcC-C-
Q 044568          151 DK----RDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRG-T-  223 (257)
Q Consensus       151 ~~----~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-  223 (257)
                      ..    ....|||||.+..+.++.|+|||||||++||++| |..||......+.   +             ...+.+ + 
T Consensus       860 ~~~~a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~~~~n~~v---~-------------~~~~~ggRL  923 (1025)
T KOG1095|consen  860 KHGEAMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPSRSNFEV---L-------------LDVLEGGRL  923 (1025)
T ss_pred             ccCccccceecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCCCCcchHHH---H-------------HHHHhCCcc
Confidence            22    2245999999999999999999999999999999 8899975522111   0             011111 1 


Q ss_pred             CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHh
Q 044568          224 KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMM  256 (257)
Q Consensus       224 ~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~  256 (257)
                      ..|..|+..+++++..||+.+|++|| ++.|++.
T Consensus       924 ~~P~~CP~~ly~lM~~CW~~~pe~RP~F~~i~~q  957 (1025)
T KOG1095|consen  924 DPPSYCPEKLYQLMLQCWKHDPEDRPSFRTIVEQ  957 (1025)
T ss_pred             CCCCCCChHHHHHHHHHccCChhhCccHHHHHhh
Confidence            45778899999999999999999999 9999864

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=100.00  E-value=5.4e-40  Score=284.90  Aligned_cols=225  Identities=20%  Similarity=0.247  Sum_probs=186.3

Q ss_pred             ccceeeecccCCCCCeeeccchhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHHHhccCC
Q 044568            6 LSNFYRSSFNARNSPWISRVSWTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSAE   85 (257)
Q Consensus         6 ~~~~y~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~   85 (257)
                      -+-|++|++. ++.++||+++-.+|-+.-.       +++++|+||+.+.|.|.-...+|||||||..|-|..+|+  ..
T Consensus       137 QGAVF~Grl~-netVAVKKV~elkETdIKH-------LRkLkH~NII~FkGVCtqsPcyCIiMEfCa~GqL~~VLk--a~  206 (904)
T KOG4721|consen  137 QGAVFLGRLH-NETVAVKKVRELKETDIKH-------LRKLKHPNIITFKGVCTQSPCYCIIMEFCAQGQLYEVLK--AG  206 (904)
T ss_pred             ccceeeeecc-CceehhHHHhhhhhhhHHH-------HHhccCcceeeEeeeecCCceeEEeeeccccccHHHHHh--cc
Confidence            4568899875 5678888887654443322       338999999999999999999999999999999999998  77


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC--CCcccccCCCCccCcccc
Q 044568           86 RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN--EDFVIDKRDKGYMAPECY  163 (257)
Q Consensus        86 ~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~--~~~~~~~~~~~~~aPE~~  163 (257)
                      ..++....+.|..+||.|+.|||.+   .|+|||||..|||+..+-.+||+|||.++...  .+.....||..|||||++
T Consensus       207 ~~itp~llv~Wsk~IA~GM~YLH~h---KIIHRDLKSPNiLIs~~d~VKIsDFGTS~e~~~~STkMSFaGTVaWMAPEvI  283 (904)
T KOG4721|consen  207 RPITPSLLVDWSKGIAGGMNYLHLH---KIIHRDLKSPNILISYDDVVKISDFGTSKELSDKSTKMSFAGTVAWMAPEVI  283 (904)
T ss_pred             CccCHHHHHHHHHHhhhhhHHHHHh---hHhhhccCCCceEeeccceEEeccccchHhhhhhhhhhhhhhhHhhhCHHHh
Confidence            8888899999999999999999999   99999999999999999999999999987543  344667899999999999


Q ss_pred             cCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccC
Q 044568          164 KRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQD  243 (257)
Q Consensus       164 ~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~  243 (257)
                      ++.+.+.|+|||||||+||||+||..||.+-++...       .+  ....+...+    ..|..+++-+.-|+++||+.
T Consensus       284 rnePcsEKVDIwSfGVVLWEmLT~EiPYkdVdssAI-------Iw--GVGsNsL~L----pvPstcP~GfklL~Kqcw~s  350 (904)
T KOG4721|consen  284 RNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVDSSAI-------IW--GVGSNSLHL----PVPSTCPDGFKLLLKQCWNS  350 (904)
T ss_pred             hcCCcccccceehhHHHHHHHHhcCCCccccchhee-------EE--eccCCcccc----cCcccCchHHHHHHHHHHhc
Confidence            999999999999999999999999999975422110       00  001111111    45677888899999999999


Q ss_pred             CCCCCC-hHHHHHh
Q 044568          244 EPALRP-MKCAVMM  256 (257)
Q Consensus       244 ~p~~RP-~~ei~~~  256 (257)
                      .|..|| +++|+.-
T Consensus       351 KpRNRPSFrqil~H  364 (904)
T KOG4721|consen  351 KPRNRPSFRQILLH  364 (904)
T ss_pred             CCCCCccHHHHHHH
Confidence            999999 9999864

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-39  Score=280.66  Aligned_cols=224  Identities=21%  Similarity=0.238  Sum_probs=184.9

Q ss_pred             cccceeeec-ccCCCCCeeeccch---------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCC
Q 044568            5 KLSNFYRSS-FNARNSPWISRVSW---------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNG   74 (257)
Q Consensus         5 ~~~~~y~~~-~~~~~~~~i~~~~~---------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~g   74 (257)
                      .++.||-++ ...+..++||+.++         .+|+.++.         ...|+|+|++...+...+..++|||||+||
T Consensus       285 aSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~---------~~~H~NiVnfl~Sylv~deLWVVMEym~gg  355 (550)
T KOG0578|consen  285 ATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMR---------DLHHPNIVNFLDSYLVGDELWVVMEYMEGG  355 (550)
T ss_pred             cccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHH---------hccchHHHHHHHHhcccceeEEEEeecCCC
Confidence            355677776 55666778888663         46666666         889999999999999999999999999999


Q ss_pred             CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc---ccc
Q 044568           75 SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF---VID  151 (257)
Q Consensus        75 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~---~~~  151 (257)
                      +|.|++   ....|++.+...++.+++.||.|||.+   +|+|||||.+|||++.++.+||+|||++..+....   ...
T Consensus       356 sLTDvV---t~~~~~E~qIA~Icre~l~aL~fLH~~---gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~~~KR~Tm  429 (550)
T KOG0578|consen  356 SLTDVV---TKTRMTEGQIAAICREILQGLKFLHAR---GIIHRDIKSDNILLTMDGSVKLTDFGFCAQISEEQSKRSTM  429 (550)
T ss_pred             chhhhh---hcccccHHHHHHHHHHHHHHHHHHHhc---ceeeeccccceeEeccCCcEEEeeeeeeeccccccCccccc
Confidence            999999   456699999999999999999999999   99999999999999999999999999987654433   566


Q ss_pred             cCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHH
Q 044568          152 KRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLE  231 (257)
Q Consensus       152 ~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (257)
                      .||+.|+|||......|+++.||||||++++||+-|.+||-.+.+...     -+.-..       +.......+.....
T Consensus       430 VGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYlnE~PlrA-----lyLIa~-------ng~P~lk~~~klS~  497 (550)
T KOG0578|consen  430 VGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRA-----LYLIAT-------NGTPKLKNPEKLSP  497 (550)
T ss_pred             cCCCCccchhhhhhcccCccccchhhhhHHHHHhcCCCCccCCChHHH-----HHHHhh-------cCCCCcCCccccCH
Confidence            899999999999999999999999999999999999999975422211     111110       11111134555678


Q ss_pred             HHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          232 NLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       232 ~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .+.+++.+||+.||++|| +.|+++
T Consensus       498 ~~kdFL~~cL~~dv~~RasA~eLL~  522 (550)
T KOG0578|consen  498 ELKDFLDRCLVVDVEQRASAKELLE  522 (550)
T ss_pred             HHHHHHHHHhhcchhcCCCHHHHhc
Confidence            899999999999999999 999985

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1e-38  Score=270.15  Aligned_cols=239  Identities=21%  Similarity=0.197  Sum_probs=182.0

Q ss_pred             cceeeec-ccCCCCCeeeccchh---hhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHHHhc
Q 044568            7 SNFYRSS-FNARNSPWISRVSWT---ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFC   82 (257)
Q Consensus         7 ~~~y~~~-~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~   82 (257)
                      +.||++. ...++-++||..++.   +.++.+....+  .++-+.||||++....|..++..++||.||.+||+.++++.
T Consensus        40 a~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~--~msl~~HPNIv~~~~sFvv~~~LWvVmpfMa~GS~ldIik~  117 (516)
T KOG0582|consen   40 AVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQ--TMSLIDHPNIVTYHCSFVVDSELWVVMPFMAGGSLLDIIKT  117 (516)
T ss_pred             eEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHH--HhhhcCCCCcceEEEEEEecceeEEeehhhcCCcHHHHHHH
Confidence            7899998 455566789988862   33333332222  34488899999999999999999999999999999999998


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-------ccccCCC
Q 044568           83 SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-------VIDKRDK  155 (257)
Q Consensus        83 ~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-------~~~~~~~  155 (257)
                      .-+.+|++..+..++.+++.||.|||.+   |.+|||+|+.|||++.+|.+||+|||.+-......       ....+|+
T Consensus       118 ~~~~Gl~E~~Ia~iLre~LkaL~YLH~~---G~IHRdvKAgnILi~~dG~VkLadFgvsa~l~~~G~R~~~rf~tfvgtp  194 (516)
T KOG0582|consen  118 YYPDGLEEASIATILREVLKALDYLHQN---GHIHRDVKAGNILIDSDGTVKLADFGVSASLFDSGDRQVTRFNTFVGTP  194 (516)
T ss_pred             HccccccHHHHHHHHHHHHHHHHHHHhc---CceecccccccEEEcCCCcEEEcCceeeeeecccCceeeEeeccccCcc
Confidence            7788899999999999999999999999   99999999999999999999999999765332221       3447899


Q ss_pred             CccCcccccC--CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHH
Q 044568          156 GYMAPECYKR--TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENL  233 (257)
Q Consensus       156 ~~~aPE~~~~--~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  233 (257)
                      .|+|||.+..  ..|+.|+||||||++..|+++|..||....+-  ...+....   ...+.......+..........+
T Consensus       195 ~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~pPm--kvLl~tLq---n~pp~~~t~~~~~d~~k~~~ksf  269 (516)
T KOG0582|consen  195 CWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSKYPPM--KVLLLTLQ---NDPPTLLTSGLDKDEDKKFSKSF  269 (516)
T ss_pred             cccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcccCChH--HHHHHHhc---CCCCCcccccCChHHhhhhcHHH
Confidence            9999999653  35999999999999999999999999744111  11111110   00011110000112233345689


Q ss_pred             HHHHHHcccCCCCCCC-hHHHHH
Q 044568          234 VKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       234 ~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .+++..||++||.+|| ++++++
T Consensus       270 ~e~i~~CL~kDP~kRptAskLlk  292 (516)
T KOG0582|consen  270 REMIALCLVKDPSKRPTASKLLK  292 (516)
T ss_pred             HHHHHHHhhcCcccCCCHHHHhc
Confidence            9999999999999999 999875

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=7e-39  Score=265.99  Aligned_cols=225  Identities=17%  Similarity=0.169  Sum_probs=173.9

Q ss_pred             ccccceeeecccCC-CCCeeeccchhhhHHH---HhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHH
Q 044568            4 TKLSNFYRSSFNAR-NSPWISRVSWTADIEV---LSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDI   79 (257)
Q Consensus         4 ~~~~~~y~~~~~~~-~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~   79 (257)
                      +.++.||..+..++ .-.++|..+-..+++.   -...-...-+.++.||+||++...+++.+..|||+||+.||.|..+
T Consensus        36 G~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLylVld~~~GGeLf~h  115 (357)
T KOG0598|consen   36 GSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKLYLVLDYLNGGELFYH  115 (357)
T ss_pred             cCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeEEEEEeccCCccHHHH
Confidence            34667777764433 3345544332222221   0011111133489999999999999999999999999999999999


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccC---CCCcccccCCCC
Q 044568           80 IFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLP---NEDFVIDKRDKG  156 (257)
Q Consensus        80 l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~---~~~~~~~~~~~~  156 (257)
                      |.  ..+.+++..++.|+..|+.||.|||++   +|+|||+||+|||++.+|+++|+|||+++..   +......+||+.
T Consensus       116 L~--~eg~F~E~~arfYlaEi~lAL~~LH~~---gIiyRDlKPENILLd~~GHi~LtDFgL~k~~~~~~~~t~tfcGT~e  190 (357)
T KOG0598|consen  116 LQ--REGRFSEDRARFYLAEIVLALGYLHSK---GIIYRDLKPENILLDEQGHIKLTDFGLCKEDLKDGDATRTFCGTPE  190 (357)
T ss_pred             HH--hcCCcchhHHHHHHHHHHHHHHHHHhC---CeeeccCCHHHeeecCCCcEEEeccccchhcccCCCccccccCCcc
Confidence            98  678899999999999999999999999   9999999999999999999999999999842   233455699999


Q ss_pred             ccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC--CCCHHHHHHHH
Q 044568          157 YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT--KVDKKNLENLV  234 (257)
Q Consensus       157 ~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~  234 (257)
                      |+|||++.+..|+..+|+||+|+++|||++|.+||...+...                -.+.+....  ..+.-...+..
T Consensus       191 YmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~~~~~~~----------------~~~~I~~~k~~~~p~~ls~~ar  254 (357)
T KOG0598|consen  191 YMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFYAEDVKK----------------MYDKILKGKLPLPPGYLSEEAR  254 (357)
T ss_pred             ccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCcCccHHH----------------HHHHHhcCcCCCCCccCCHHHH
Confidence            999999999999999999999999999999999998662111                111222222  22233556788


Q ss_pred             HHHHHcccCCCCCCC
Q 044568          235 KVGLWCVQDEPALRP  249 (257)
Q Consensus       235 ~l~~~cl~~~p~~RP  249 (257)
                      +++...++.||++|.
T Consensus       255 dll~~LL~rdp~~RL  269 (357)
T KOG0598|consen  255 DLLKKLLKRDPRQRL  269 (357)
T ss_pred             HHHHHHhccCHHHhc
Confidence            899999999999993

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=4.7e-39  Score=259.80  Aligned_cols=183  Identities=20%  Similarity=0.178  Sum_probs=162.9

Q ss_pred             cccCCceeeeceeeeecCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCc
Q 044568           45 RIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQN  124 (257)
Q Consensus        45 ~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~n  124 (257)
                      .+.||+++++.+.+.+.+..+|||||.+||-|..+++  ..+++++..++.++.||+.|++|||+.   +|++||+||+|
T Consensus       100 ~v~~PFlv~l~~t~~d~~~lymvmeyv~GGElFS~Lr--k~~rF~e~~arFYAAeivlAleylH~~---~iiYRDLKPEN  174 (355)
T KOG0616|consen  100 AVSHPFLVKLYGTFKDNSNLYMVMEYVPGGELFSYLR--KSGRFSEPHARFYAAEIVLALEYLHSL---DIIYRDLKPEN  174 (355)
T ss_pred             hccCceeEEEEEeeccCCeEEEEEeccCCccHHHHHH--hcCCCCchhHHHHHHHHHHHHHHHHhc---CeeeccCChHH
Confidence            8889999999999999999999999999999999998  678899999999999999999999999   99999999999


Q ss_pred             eeeCCCCceEEeeecccccCCCCcccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHH
Q 044568          125 ILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILT  204 (257)
Q Consensus       125 il~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~  204 (257)
                      ||+|.+|.+|+.|||+++.........+||+.|+|||.+...+++.++|+||||+++|||+.|.+||....+..      
T Consensus       175 iLlD~~G~iKitDFGFAK~v~~rT~TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~~~~~------  248 (355)
T KOG0616|consen  175 LLLDQNGHIKITDFGFAKRVSGRTWTLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDDNPIQ------  248 (355)
T ss_pred             eeeccCCcEEEEeccceEEecCcEEEecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCCChHH------
Confidence            99999999999999999988888888999999999999999999999999999999999999999998663311      


Q ss_pred             HHHHHhhhhhhhhhhhcCC-CCCHHHHHHHHHHHHHcccCCCCCC
Q 044568          205 NWVYKCFINRELNKLVRGT-KVDKKNLENLVKVGLWCVQDEPALR  248 (257)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~cl~~~p~~R  248 (257)
                                -++.++.+. .+|......+.+|+...++.|-.+|
T Consensus       249 ----------iY~KI~~~~v~fP~~fs~~~kdLl~~LL~vD~t~R  283 (355)
T KOG0616|consen  249 ----------IYEKILEGKVKFPSYFSSDAKDLLKKLLQVDLTKR  283 (355)
T ss_pred             ----------HHHHHHhCcccCCcccCHHHHHHHHHHHhhhhHhh
Confidence                      122333333 4555566677778888888888877

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-38  Score=275.06  Aligned_cols=231  Identities=19%  Similarity=0.166  Sum_probs=183.9

Q ss_pred             ccccceeeec-ccCCCCCeeeccch---hhhHHHHhHhhhccccccc-cCCceeeeceeeeecCceeEEEeecCCCCHHH
Q 044568            4 TKLSNFYRSS-FNARNSPWISRVSW---TADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVSGKIERPVRNGSLTD   78 (257)
Q Consensus         4 ~~~~~~y~~~-~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~   78 (257)
                      +.+|.|++++ ...+...+||..+-   .+|-++-.+.....-+.++ .|+.|+++...+++....|+|+||+++|+|.+
T Consensus        84 GSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~sLYFvLe~A~nGdll~  163 (604)
T KOG0592|consen   84 GSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEESLYFVLEYAPNGDLLD  163 (604)
T ss_pred             ccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccceEEEEEecCCCcHHH
Confidence            4577888888 45566677776552   2333222222222233344 79999999999999999999999999999999


Q ss_pred             HHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc----------
Q 044568           79 IIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF----------  148 (257)
Q Consensus        79 ~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~----------  148 (257)
                      +|.  .-+.|++..++.++.+|+.||+|||++   |||||||||+|||++++++++|.|||.++.+....          
T Consensus       164 ~i~--K~Gsfde~caR~YAAeIldAleylH~~---GIIHRDlKPENILLd~dmhikITDFGsAK~l~~~~~~~~~~~~~~  238 (604)
T KOG0592|consen  164 LIK--KYGSFDETCARFYAAEILDALEYLHSN---GIIHRDLKPENILLDKDGHIKITDFGSAKILSPSQKSQENPVDPN  238 (604)
T ss_pred             HHH--HhCcchHHHHHHHHHHHHHHHHHHHhc---CceeccCChhheeEcCCCcEEEeeccccccCChhhccccCccCcc
Confidence            998  557899999999999999999999999   99999999999999999999999999987643221          


Q ss_pred             ------ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcC
Q 044568          149 ------VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRG  222 (257)
Q Consensus       149 ------~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (257)
                            .+..||..|.+||++.....+..+|||+|||+||.|+.|.+||....   +....             +.+++-
T Consensus       239 ~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~N---eyliF-------------qkI~~l  302 (604)
T KOG0592|consen  239 QASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAAN---EYLIF-------------QKIQAL  302 (604)
T ss_pred             cccCcccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCcccc---HHHHH-------------HHHHHh
Confidence                  33578889999999999999999999999999999999999997552   11111             122221


Q ss_pred             C-CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          223 T-KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       223 ~-~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      . .++...++...+|+.+.|..||.+|+ ++||-+
T Consensus       303 ~y~fp~~fp~~a~dLv~KLLv~dp~~Rlt~~qIk~  337 (604)
T KOG0592|consen  303 DYEFPEGFPEDARDLIKKLLVRDPSDRLTSQQIKA  337 (604)
T ss_pred             cccCCCCCCHHHHHHHHHHHccCccccccHHHHhh
Confidence            1 45666668889999999999999999 988854

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=7.5e-38  Score=271.37  Aligned_cols=222  Identities=19%  Similarity=0.225  Sum_probs=181.4

Q ss_pred             ccccceeeeccc-CCCCCeeeccchh--------------hhHHHHhHhhhcccccccc-CCceeeeceeeeecCceeEE
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSWT--------------ADIEVLSVAMRGSKCTRIR-GGLLLNVPVRAKLTSVSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~~--------------~~~~~~~~~~~~~~~~~~~-h~~i~~~~~~~~~~~~~~lV   67 (257)
                      +.++.||.+... +++.+++|-.+-.              +|+.         .+.+++ |+||+++..+....+..++|
T Consensus        28 GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~---------~~~~~~~HpnI~~l~ev~~t~~~~~iv   98 (370)
T KOG0583|consen   28 GSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREIS---------ILRRLRSHPNIIRLLEVFATPTKIYIV   98 (370)
T ss_pred             CCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHH---------HHHHhccCCCEeEEEEEEecCCeEEEE
Confidence            568899999755 4577777643221              2332         333888 99999999999999999999


Q ss_pred             EeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCC-CceEEeeecccccC--
Q 044568           68 ERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF-WTAKILDFGLAKLP--  144 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~-~~~kl~dfg~~~~~--  144 (257)
                      |||+.||+|.+++.  ..+++.+.++..++.|+++|++|+|++   +|+||||||+|+|++.+ +.+||+|||++...  
T Consensus        99 mEy~~gGdL~~~i~--~~g~l~E~~ar~~F~Qlisav~y~H~~---gi~HRDLK~ENilld~~~~~~Kl~DFG~s~~~~~  173 (370)
T KOG0583|consen   99 MEYCSGGDLFDYIV--NKGRLKEDEARKYFRQLISAVAYCHSR---GIVHRDLKPENILLDGNEGNLKLSDFGLSAISPG  173 (370)
T ss_pred             EEecCCccHHHHHH--HcCCCChHHHHHHHHHHHHHHHHHHhC---CEeeCCCCHHHEEecCCCCCEEEeccccccccCC
Confidence            99999999999998  468899999999999999999999999   99999999999999999 99999999999866  


Q ss_pred             -CCCcccccCCCCccCcccccCCC-CC-ccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc
Q 044568          145 -NEDFVIDKRDKGYMAPECYKRTP-IS-VKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR  221 (257)
Q Consensus       145 -~~~~~~~~~~~~~~aPE~~~~~~-~~-~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (257)
                       .......+||+.|+|||.+.+.. |+ .++||||+|++||.|++|..||+.....       ..         ...+..
T Consensus       174 ~~~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d~~~~-------~l---------~~ki~~  237 (370)
T KOG0583|consen  174 EDGLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDDSNVP-------NL---------YRKIRK  237 (370)
T ss_pred             CCCcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCCccHH-------HH---------HHHHhc
Confidence             34457789999999999999877 86 7899999999999999999999864111       11         111222


Q ss_pred             CC-CCCHHH-HHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          222 GT-KVDKKN-LENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       222 ~~-~~~~~~-~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +. .++... ...+..|+.+|+..||.+|+ +.||++
T Consensus       238 ~~~~~p~~~~S~~~~~Li~~mL~~~P~~R~t~~~i~~  274 (370)
T KOG0583|consen  238 GEFKIPSYLLSPEARSLIEKMLVPDPSTRITLLEILE  274 (370)
T ss_pred             CCccCCCCcCCHHHHHHHHHHcCCCcccCCCHHHHhh
Confidence            21 333334 67889999999999999999 999973

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=100.00  E-value=1.4e-37  Score=268.44  Aligned_cols=229  Identities=19%  Similarity=0.267  Sum_probs=172.5

Q ss_pred             ccccceeeecc------cCCCCCeeeccc----------hhhhHHHHhHhhhccccccc-cCCceeeeceeeeec-Ccee
Q 044568            4 TKLSNFYRSSF------NARNSPWISRVS----------WTADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLT-SVSG   65 (257)
Q Consensus         4 ~~~~~~y~~~~------~~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~-~~~~   65 (257)
                      +.|+.||++..      ..+..+++|...          +.+|++.+.         ++ .|+||+++.+.+... +..+
T Consensus        18 G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~---------~l~~h~niv~~~~~~~~~~~~~~   88 (338)
T cd05102          18 GAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILI---------HIGNHLNVVNLLGACTKPNGPLM   88 (338)
T ss_pred             CCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHH---------HhccCcceeeEEeEecCCCCceE
Confidence            67899999964      223457777653          223333333         55 799999999987754 4678


Q ss_pred             EEEeecCCCCHHHHHhccC------------------------------------------------------------C
Q 044568           66 KIERPVRNGSLTDIIFCSA------------------------------------------------------------E   85 (257)
Q Consensus        66 lV~E~~~~gsL~~~l~~~~------------------------------------------------------------~   85 (257)
                      +||||+++|+|.+++....                                                            .
T Consensus        89 lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (338)
T cd05102          89 VIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQETDDLWK  168 (338)
T ss_pred             EEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccchhcccccc
Confidence            9999999999999997421                                                            1


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-----ccccCCCCccCc
Q 044568           86 RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-----VIDKRDKGYMAP  160 (257)
Q Consensus        86 ~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-----~~~~~~~~~~aP  160 (257)
                      ..+++.++..++.|++.||.|||++   +++||||||+||+++.++.+||+|||+++......     ....++..|+||
T Consensus       169 ~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aP  245 (338)
T cd05102         169 SPLTMEDLICYSFQVARGMEFLASR---KCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLKWMAP  245 (338)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCccceEEEcCCCcEEEeecccccccccCcchhcccCCCCCccccCc
Confidence            3477888999999999999999999   99999999999999999999999999987532211     122345679999


Q ss_pred             ccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHH
Q 044568          161 ECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLW  239 (257)
Q Consensus       161 E~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  239 (257)
                      |.+.+..++.++||||||+++|||++ |..||........   ...    ......      ....+...++.+.+++.+
T Consensus       246 E~~~~~~~~~~sDiwslG~il~el~~~g~~pf~~~~~~~~---~~~----~~~~~~------~~~~~~~~~~~l~~li~~  312 (338)
T cd05102         246 ESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQINEE---FCQ----RLKDGT------RMRAPENATPEIYRIMLA  312 (338)
T ss_pred             HHhhcCCCCcccCHHHHHHHHHHHHhCCCCCCCCCCccHH---HHH----HHhcCC------CCCCCCCCCHHHHHHHHH
Confidence            99998889999999999999999997 9999976432211   000    000000      011233455679999999


Q ss_pred             cccCCCCCCC-hHHHHHhC
Q 044568          240 CVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       240 cl~~~p~~RP-~~ei~~~L  257 (257)
                      ||+.||.+|| +.|+++.|
T Consensus       313 cl~~dp~~RPs~~el~~~l  331 (338)
T cd05102         313 CWQGDPKERPTFSALVEIL  331 (338)
T ss_pred             HccCChhhCcCHHHHHHHH
Confidence            9999999999 99999875

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=9.1e-38  Score=264.46  Aligned_cols=225  Identities=16%  Similarity=0.114  Sum_probs=175.8

Q ss_pred             ccccceeeeccc-CCCCCeeeccchhhhH--H-HHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHH
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSWTADI--E-VLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDI   79 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~~~~~--~-~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~   79 (257)
                      +.++.||++... +++.+++|........  + .-.+...-..+.++.|+|++++.+.+...+..++||||+++|+|.++
T Consensus        12 G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~   91 (291)
T cd05612          12 GTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLMEYVPGGELFSY   91 (291)
T ss_pred             CCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEEeCCCCCCHHHH
Confidence            568899999976 4556777765432110  0 00000011133388999999999999999999999999999999999


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcccccCCCCccC
Q 044568           80 IFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA  159 (257)
Q Consensus        80 l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~a  159 (257)
                      +.  ....+++..+..++.|++.||.|||++   +++||||+|+||+++.++.+||+|||++...........+++.|+|
T Consensus        92 ~~--~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~a  166 (291)
T cd05612          92 LR--NSGRFSNSTGLFYASEIVCALEYLHSK---EIVYRDLKPENILLDKEGHIKLTDFGFAKKLRDRTWTLCGTPEYLA  166 (291)
T ss_pred             HH--HcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHeEECCCCCEEEEecCcchhccCCcccccCChhhcC
Confidence            97  456789999999999999999999999   9999999999999999999999999998865554455678899999


Q ss_pred             cccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcC-CCCCHHHHHHHHHHHH
Q 044568          160 PECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRG-TKVDKKNLENLVKVGL  238 (257)
Q Consensus       160 PE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~  238 (257)
                      ||.+.+..++.++||||||+++|||++|+.||.......   ...             ..... ..++......+.+++.
T Consensus       167 PE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~~~~~---~~~-------------~i~~~~~~~~~~~~~~~~~li~  230 (291)
T cd05612         167 PEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDNPFG---IYE-------------KILAGKLEFPRHLDLYAKDLIK  230 (291)
T ss_pred             HHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH---HHH-------------HHHhCCcCCCccCCHHHHHHHH
Confidence            999998889999999999999999999999997542111   000             11111 1233344567889999


Q ss_pred             HcccCCCCCCC
Q 044568          239 WCVQDEPALRP  249 (257)
Q Consensus       239 ~cl~~~p~~RP  249 (257)
                      +||+.||.+||
T Consensus       231 ~~l~~dp~~R~  241 (291)
T cd05612         231 KLLVVDRTRRL  241 (291)
T ss_pred             HHcCCCHHHcc
Confidence            99999999999

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.4e-38  Score=276.06  Aligned_cols=238  Identities=19%  Similarity=0.249  Sum_probs=186.1

Q ss_pred             cccccceeeecccCCCC-----Ceeeccch---hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCC
Q 044568            3 CTKLSNFYRSSFNARNS-----PWISRVSW---TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNG   74 (257)
Q Consensus         3 ~~~~~~~y~~~~~~~~~-----~~i~~~~~---~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~g   74 (257)
                      .+.|+.||+|++..+..     +++|...-   ....+...+......+..+.|+||++++|++......+||||+|.||
T Consensus       167 eGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa~~~~Pl~ivmEl~~gG  246 (474)
T KOG0194|consen  167 EGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGVAVLEEPLMLVMELCNGG  246 (474)
T ss_pred             cccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCccEEEEEecCCC
Confidence            36799999999988754     57766552   22333333333333444899999999999999999999999999999


Q ss_pred             CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcc---cc
Q 044568           75 SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFV---ID  151 (257)
Q Consensus        75 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~---~~  151 (257)
                      +|.++|.+ ....++..++..++.+.+.||+|||++   +++||||.++|+|++.++.+|++|||+++.......   ..
T Consensus       247 sL~~~L~k-~~~~v~~~ek~~~~~~AA~Gl~YLh~k---~~IHRDIAARNcL~~~~~~vKISDFGLs~~~~~~~~~~~~~  322 (474)
T KOG0194|consen  247 SLDDYLKK-NKKSLPTLEKLRFCYDAARGLEYLHSK---NCIHRDIAARNCLYSKKGVVKISDFGLSRAGSQYVMKKFLK  322 (474)
T ss_pred             cHHHHHHh-CCCCCCHHHHHHHHHHHHhHHHHHHHC---CCcchhHhHHHheecCCCeEEeCccccccCCcceeeccccc
Confidence            99999986 445799999999999999999999999   999999999999999998999999999875431111   11


Q ss_pred             cCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHH
Q 044568          152 KRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNL  230 (257)
Q Consensus       152 ~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (257)
                      .-...|+|||.+....|+.++||||||+++||+.+ |..||.+....    ....+..    ....     ....+...+
T Consensus       323 klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~~~~----~v~~kI~----~~~~-----r~~~~~~~p  389 (474)
T KOG0194|consen  323 KLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPGMKNY----EVKAKIV----KNGY-----RMPIPSKTP  389 (474)
T ss_pred             cCcceecChhhhccCccccccchhheeeeEEeeeccCCCCCCCCCHH----HHHHHHH----hcCc-----cCCCCCCCH
Confidence            23456999999999999999999999999999999 88999755211    1111110    0000     114455778


Q ss_pred             HHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          231 ENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       231 ~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      +.+..++.+||..+|++|| |.++.+.|
T Consensus       390 ~~~~~~~~~c~~~~p~~R~tm~~i~~~l  417 (474)
T KOG0194|consen  390 KELAKVMKQCWKKDPEDRPTMSTIKKKL  417 (474)
T ss_pred             HHHHHHHHHhccCChhhccCHHHHHHHH
Confidence            8899999999999999999 99998753

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=100.00  E-value=1.6e-37  Score=267.38  Aligned_cols=216  Identities=17%  Similarity=0.136  Sum_probs=175.0

Q ss_pred             ccccceeeecccC-CCCCeeeccch------------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||+++... ++.+++|....            .+|++.         +.++.|+|++++.+.+...+..++||||
T Consensus        29 G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~---------l~~l~hp~iv~~~~~~~~~~~~~lv~e~   99 (329)
T PTZ00263         29 GSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSI---------LMELSHPFIVNMMCSFQDENRVYFLLEF   99 (329)
T ss_pred             cCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHH---------HHhCCCCCCCcEEEEEEcCCEEEEEEcC
Confidence            5688999999765 45567775542            223333         3388999999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCccc
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVI  150 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~~  150 (257)
                      +++|+|.+++.  ....+++..+..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++.........
T Consensus       100 ~~~~~L~~~l~--~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~  174 (329)
T PTZ00263        100 VVGGELFTHLR--KAGRFPNDVAKFYHAELVLAFEYLHSK---DIIYRDLKPENLLLDNKGHVKVTDFGFAKKVPDRTFT  174 (329)
T ss_pred             CCCChHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHEEECCCCCEEEeeccCceEcCCCcce
Confidence            99999999997  456789999999999999999999999   9999999999999999999999999998866555555


Q ss_pred             ccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC-CCCHHH
Q 044568          151 DKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT-KVDKKN  229 (257)
Q Consensus       151 ~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  229 (257)
                      ..+++.|+|||.+.+..++.++|||||||++|||++|..||.......   ..             ....... ..+...
T Consensus       175 ~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~---~~-------------~~i~~~~~~~p~~~  238 (329)
T PTZ00263        175 LCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDTPFR---IY-------------EKILAGRLKFPNWF  238 (329)
T ss_pred             ecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCCCCHHH---HH-------------HHHhcCCcCCCCCC
Confidence            678899999999998889999999999999999999999997542110   00             0111111 223334


Q ss_pred             HHHHHHHHHHcccCCCCCCC
Q 044568          230 LENLVKVGLWCVQDEPALRP  249 (257)
Q Consensus       230 ~~~l~~l~~~cl~~~p~~RP  249 (257)
                      ...+.+++.+||+.||.+||
T Consensus       239 ~~~~~~li~~~L~~dP~~R~  258 (329)
T PTZ00263        239 DGRARDLVKGLLQTDHTKRL  258 (329)
T ss_pred             CHHHHHHHHHHhhcCHHHcC
Confidence            46788999999999999998

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=100.00  E-value=6.7e-38  Score=271.72  Aligned_cols=220  Identities=21%  Similarity=0.255  Sum_probs=184.1

Q ss_pred             ccccceeeecccCCCC-Ceeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            4 TKLSNFYRSSFNARNS-PWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~-~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      ++|+.||||+-+.+.. +++|-+.           ..+|++.+.         +++|+||+.....+....+.++|+|||
T Consensus        13 Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r---------~lkHpniv~m~esfEt~~~~~vVte~a   83 (808)
T KOG0597|consen   13 GSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILR---------SLKHPNIVEMLESFETSAHLWVVTEYA   83 (808)
T ss_pred             CccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHH---------hcCCcchhhHHHhhcccceEEEEehhh
Confidence            5799999999655554 4555322           345555555         999999999999999999999999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc---
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF---  148 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~---  148 (257)
                      .| +|..+|.  .++.|+++.+..++.++++||.|||+.   +|+|||+||.|||+++++.+|++|||+++......   
T Consensus        84 ~g-~L~~il~--~d~~lpEe~v~~~a~~LVsaL~yLhs~---rilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~~t~vl  157 (808)
T KOG0597|consen   84 VG-DLFTILE--QDGKLPEEQVRAIAYDLVSALYYLHSN---RILHRDMKPQNILLEKGGTLKLCDFGLARAMSTNTSVL  157 (808)
T ss_pred             hh-hHHHHHH--hccCCCHHHHHHHHHHHHHHHHHHHhc---CcccccCCcceeeecCCCceeechhhhhhhcccCceee
Confidence            76 9999998  788999999999999999999999999   99999999999999999999999999998655433   


Q ss_pred             ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhh-cCCCCCH
Q 044568          149 VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLV-RGTKVDK  227 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  227 (257)
                      ....||+.|+|||.+.+.+|+..+|+||+||++||+++|++||...       .+.         .-...+. ++...+.
T Consensus       158 tsikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~a~-------si~---------~Lv~~I~~d~v~~p~  221 (808)
T KOG0597|consen  158 TSIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFYAR-------SIT---------QLVKSILKDPVKPPS  221 (808)
T ss_pred             eeccCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCchHH-------HHH---------HHHHHHhcCCCCCcc
Confidence            6779999999999999999999999999999999999999999633       010         1111222 2235566


Q ss_pred             HHHHHHHHHHHHcccCCCCCCC-hHHHH
Q 044568          228 KNLENLVKVGLWCVQDEPALRP-MKCAV  254 (257)
Q Consensus       228 ~~~~~l~~l~~~cl~~~p~~RP-~~ei~  254 (257)
                      +....+.+++...+.+||.+|. =.+++
T Consensus       222 ~~S~~f~nfl~gLL~kdP~~RltW~~Ll  249 (808)
T KOG0597|consen  222 TASSSFVNFLQGLLIKDPAQRLTWTDLL  249 (808)
T ss_pred             cccHHHHHHHHHHhhcChhhcccHHHHh
Confidence            7788999999999999999998 65554

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=100.00  E-value=3.8e-38  Score=262.52  Aligned_cols=234  Identities=21%  Similarity=0.295  Sum_probs=172.5

Q ss_pred             cccccceeeeccc-----CCCCCeeeccch---hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCC
Q 044568            3 CTKLSNFYRSSFN-----ARNSPWISRVSW---TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNG   74 (257)
Q Consensus         3 ~~~~~~~y~~~~~-----~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~g   74 (257)
                      .+.|+.||+|++.     .+..+++|...-   .+..+.+.- .. ..+.+++|+|++++.+.+...+..++||||+++|
T Consensus         9 ~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~-e~-~~l~~l~h~ni~~~~g~~~~~~~~~lv~e~~~~g   86 (259)
T PF07714_consen    9 EGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLN-EI-QILRKLRHPNIVKLYGFCIENEPLFLVMEYCPGG   86 (259)
T ss_dssp             EESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHH-HH-HHHHTHSBTTBE-EEEEEESSSSEEEEEE--TTE
T ss_pred             cCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeee-cc-cccccccccccccccccccccccccccccccccc
Confidence            3678999999988     234446666532   111111110 11 1333789999999999999888899999999999


Q ss_pred             CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-----c
Q 044568           75 SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-----V  149 (257)
Q Consensus        75 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-----~  149 (257)
                      +|.++|.......+++.++..++.|++.||.|||++   +++|++|+++||+++.++.+||+|||+........     .
T Consensus        87 ~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~---~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~~~~~~~~~~  163 (259)
T PF07714_consen   87 SLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHSN---NIIHGNLSPSNILLDSNGQVKLSDFGLSRPISEKSKYKNDS  163 (259)
T ss_dssp             BHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHT---TEEEST-SGGGEEEETTTEEEEESTTTGEETTTSSSEEEST
T ss_pred             cccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccccccc
Confidence            999999875467899999999999999999999999   99999999999999999999999999987652211     2


Q ss_pred             cccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC--CCC
Q 044568          150 IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT--KVD  226 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  226 (257)
                      .......|+|||.+....++.++||||||+++||+++ |+.||....  ..  .+.            ..+.+..  ..+
T Consensus       164 ~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~~--~~--~~~------------~~~~~~~~~~~~  227 (259)
T PF07714_consen  164 SQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSDYD--NE--EII------------EKLKQGQRLPIP  227 (259)
T ss_dssp             TSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTTSC--HH--HHH------------HHHHTTEETTSB
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccc--cc--ccc------------ccccccccceec
Confidence            2334556999999988889999999999999999999 778886441  11  000            0111111  233


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          227 KKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       227 ~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ..++..+.+++.+||+.||++|| ++++++.|
T Consensus       228 ~~~~~~~~~li~~C~~~~p~~RPs~~~i~~~L  259 (259)
T PF07714_consen  228 DNCPKDIYSLIQQCWSHDPEKRPSFQEILQEL  259 (259)
T ss_dssp             TTSBHHHHHHHHHHT-SSGGGS--HHHHHHHH
T ss_pred             cchhHHHHHHHHHHcCCChhhCcCHHHHHhcC
Confidence            44567799999999999999999 99999875

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-38  Score=276.50  Aligned_cols=228  Identities=23%  Similarity=0.334  Sum_probs=182.2

Q ss_pred             cccccceeeecccCCCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            3 CTKLSNFYRSSFNARNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         3 ~~~~~~~y~~~~~~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      .+.|+.||||.+-  +.++||.++           |.+|+.++.         +-||.||+-++|++.+... .||+.+|
T Consensus       402 sGsFGtV~Rg~wh--GdVAVK~Lnv~~pt~~qlqaFKnEVa~lk---------kTRH~NIlLFMG~~~~p~~-AIiTqwC  469 (678)
T KOG0193|consen  402 SGSFGTVYRGRWH--GDVAVKLLNVDDPTPEQLQAFKNEVAVLK---------KTRHENILLFMGACMNPPL-AIITQWC  469 (678)
T ss_pred             cccccceeecccc--cceEEEEEecCCCCHHHHHHHHHHHHHHh---------hcchhhheeeehhhcCCce-eeeehhc
Confidence            3679999999974  567777655           455665555         8999999999999999998 9999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccC-----CC
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLP-----NE  146 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~-----~~  146 (257)
                      +|.||+.+|+. ....|...+...|+.|+++|+.|||.+   +|+|+|||..||++.+++++||+|||++...     ..
T Consensus       470 eGsSLY~hlHv-~etkfdm~~~idIAqQiaqGM~YLHAK---~IIHrDLKSnNIFl~~~~kVkIgDFGLatvk~~w~g~~  545 (678)
T KOG0193|consen  470 EGSSLYTHLHV-QETKFDMNTTIDIAQQIAQGMDYLHAK---NIIHRDLKSNNIFLHEDLKVKIGDFGLATVKTRWSGEQ  545 (678)
T ss_pred             cCchhhhhccc-hhhhhhHHHHHHHHHHHHHhhhhhhhh---hhhhhhccccceEEccCCcEEEecccceeeeeeecccc
Confidence            99999999997 667899999999999999999999999   9999999999999999999999999997642     12


Q ss_pred             CcccccCCCCccCccccc---CCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC
Q 044568          147 DFVIDKRDKGYMAPECYK---RTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  223 (257)
Q Consensus       147 ~~~~~~~~~~~~aPE~~~---~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (257)
                      ......+...|+|||++.   ..+|++.+||||||+++|||++|..||...  ..+.+.+..      ..+.+  ..+..
T Consensus       546 q~~qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPysi~--~~dqIifmV------GrG~l--~pd~s  615 (678)
T KOG0193|consen  546 QLEQPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYSIQ--NRDQIIFMV------GRGYL--MPDLS  615 (678)
T ss_pred             ccCCCccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcCCC--ChhheEEEe------ccccc--Cccch
Confidence            224456667799999986   347999999999999999999999999822  222111110      00000  01111


Q ss_pred             CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHh
Q 044568          224 KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMM  256 (257)
Q Consensus       224 ~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~  256 (257)
                      ....++++++.+|+..||.++|++|| +.+|+..
T Consensus       616 ~~~s~~pk~mk~Ll~~C~~~~~~eRP~F~~il~~  649 (678)
T KOG0193|consen  616 KIRSNCPKAMKRLLSDCWKFDREERPLFPQLLSK  649 (678)
T ss_pred             hhhccCHHHHHHHHHHHHhcCcccCccHHHHHHH
Confidence            23446778999999999999999999 9999874

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=100.00  E-value=2.1e-37  Score=267.80  Aligned_cols=231  Identities=18%  Similarity=0.121  Sum_probs=178.6

Q ss_pred             ccccceeeecccCCC--CCeeeccchhhh---HHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHH
Q 044568            4 TKLSNFYRSSFNARN--SPWISRVSWTAD---IEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTD   78 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~--~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~   78 (257)
                      +.++.||+++...+.  .+++|.......   ...-.+......+..+.|+|++++.+.+...+..++||||+++|+|.+
T Consensus        41 G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~Ey~~~g~L~~  120 (340)
T PTZ00426         41 GSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLYLVLEFVIGGEFFT  120 (340)
T ss_pred             cCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCEEEEEEeCCCCCcHHH
Confidence            568899999865543  567776542110   000001111113338889999999999999999999999999999999


Q ss_pred             HHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcccccCCCCcc
Q 044568           79 IIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYM  158 (257)
Q Consensus        79 ~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~  158 (257)
                      ++.  ....+++..+..++.|++.||.|||++   +++||||||+|||++.++.++|+|||++...........+|+.|+
T Consensus       121 ~i~--~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~ikL~DFG~a~~~~~~~~~~~gt~~y~  195 (340)
T PTZ00426        121 FLR--RNKRFPNDVGCFYAAQIVLIFEYLQSL---NIVYRDLKPENLLLDKDGFIKMTDFGFAKVVDTRTYTLCGTPEYI  195 (340)
T ss_pred             HHH--HcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEccCCCHHHEEECCCCCEEEecCCCCeecCCCcceecCChhhc
Confidence            997  456799999999999999999999999   999999999999999999999999999886655555667899999


Q ss_pred             CcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC-CCCHHHHHHHHHHH
Q 044568          159 APECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT-KVDKKNLENLVKVG  237 (257)
Q Consensus       159 aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~  237 (257)
                      |||.+.+..++.++|+|||||++|||++|..||......   ....             ...... .++......+.+++
T Consensus       196 aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~---~~~~-------------~i~~~~~~~p~~~~~~~~~li  259 (340)
T PTZ00426        196 APEILLNVGHGKAADWWTLGIFIYEILVGCPPFYANEPL---LIYQ-------------KILEGIIYFPKFLDNNCKHLM  259 (340)
T ss_pred             CHHHHhCCCCCccccccchhhHHHHHhcCCCCCCCCCHH---HHHH-------------HHhcCCCCCCCCCCHHHHHHH
Confidence            999999888999999999999999999999999754211   1111             111111 22333446678999


Q ss_pred             HHcccCCCCCC-----C-hHHHHH
Q 044568          238 LWCVQDEPALR-----P-MKCAVM  255 (257)
Q Consensus       238 ~~cl~~~p~~R-----P-~~ei~~  255 (257)
                      .+||+.||++|     | ++|+++
T Consensus       260 ~~~l~~dp~~R~~~~~~~~~~~~~  283 (340)
T PTZ00426        260 KKLLSHDLTKRYGNLKKGAQNVKE  283 (340)
T ss_pred             HHHcccCHHHcCCCCCCCHHHHHc
Confidence            99999999999     6 677654

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=100.00  E-value=7.2e-37  Score=258.16  Aligned_cols=223  Identities=16%  Similarity=0.191  Sum_probs=175.7

Q ss_pred             ccccceeeeccc-CCCCCeeeccch------------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||++... ++..+++|...-            .+|++.         +.++.|++++.+...+...+..++||||
T Consensus        11 G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~i---------l~~l~~~~iv~~~~~~~~~~~~~lv~e~   81 (285)
T cd05631          11 GGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRI---------LEKVNSRFVVSLAYAYETKDALCLVLTI   81 (285)
T ss_pred             CCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHH---------HHhcCCCcEEEEEEEEccCCeEEEEEEe
Confidence            578999999864 566777775431            223333         3378899999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC--Cc
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE--DF  148 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~--~~  148 (257)
                      +++|+|.+++.......+++..+..++.|++.||.|||++   +++||||||+||++++++.++|+|||++.....  ..
T Consensus        82 ~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~~~~~~  158 (285)
T cd05631          82 MNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRE---RIVYRDLKPENILLDDRGHIRISDLGLAVQIPEGETV  158 (285)
T ss_pred             cCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHEEECCCCCEEEeeCCCcEEcCCCCee
Confidence            9999999998754556799999999999999999999999   999999999999999999999999999875432  22


Q ss_pred             ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHH
Q 044568          149 VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKK  228 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (257)
                      ....++..|+|||.+.+..++.++|||||||++|||++|+.||..............         ...  ......+..
T Consensus       159 ~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~---------~~~--~~~~~~~~~  227 (285)
T cd05631         159 RGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKERVKREEVDR---------RVK--EDQEEYSEK  227 (285)
T ss_pred             cCCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCCCcchhHHHHHH---------Hhh--cccccCCcc
Confidence            345678899999999998999999999999999999999999986533211111100         000  011123344


Q ss_pred             HHHHHHHHHHHcccCCCCCCC
Q 044568          229 NLENLVKVGLWCVQDEPALRP  249 (257)
Q Consensus       229 ~~~~l~~l~~~cl~~~p~~RP  249 (257)
                      ....+.+++.+||+.||.+||
T Consensus       228 ~s~~~~~li~~~l~~~P~~R~  248 (285)
T cd05631         228 FSEDAKSICRMLLTKNPKERL  248 (285)
T ss_pred             CCHHHHHHHHHHhhcCHHHhc
Confidence            556788999999999999997

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.4e-37  Score=263.50  Aligned_cols=225  Identities=14%  Similarity=0.119  Sum_probs=173.0

Q ss_pred             ccccceeeecccC-CCCCeeeccchhh---hHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHH
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSWTA---DIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDI   79 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~   79 (257)
                      +.++.||+++... +..+++|...-..   .-+..........+.++.|+||+++.+.+...+..++||||+++|+|.++
T Consensus         4 G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~   83 (312)
T cd05585           4 GSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGELFHH   83 (312)
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCcHHHH
Confidence            5689999999765 4456777543110   00000000011123378899999999999999999999999999999999


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC---CcccccCCCC
Q 044568           80 IFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE---DFVIDKRDKG  156 (257)
Q Consensus        80 l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~---~~~~~~~~~~  156 (257)
                      +.  ....+++..+..++.|++.||.|||++   +++||||||+||+++.++.++|+|||++.....   ......+|+.
T Consensus        84 l~--~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~  158 (312)
T cd05585          84 LQ--REGRFDLSRARFYTAELLCALENLHKF---NVIYRDLKPENILLDYQGHIALCDFGLCKLNMKDDDKTNTFCGTPE  158 (312)
T ss_pred             HH--hcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEeCCCCHHHeEECCCCcEEEEECcccccCccCCCccccccCCcc
Confidence            97  456789999999999999999999999   999999999999999999999999999874322   1233468889


Q ss_pred             ccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhh-cCCCCCHHHHHHHHH
Q 044568          157 YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLV-RGTKVDKKNLENLVK  235 (257)
Q Consensus       157 ~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~  235 (257)
                      |+|||.+.+..++.++||||+||++|||++|+.||......   ...             .... .+..++....+.+.+
T Consensus       159 y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf~~~~~~---~~~-------------~~~~~~~~~~~~~~~~~~~~  222 (312)
T cd05585         159 YLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDENVN---EMY-------------RKILQEPLRFPDGFDRDAKD  222 (312)
T ss_pred             cCCHHHHcCCCCCCccceechhHHHHHHHhCCCCcCCCCHH---HHH-------------HHHHcCCCCCCCcCCHHHHH
Confidence            99999999888999999999999999999999999754110   000             0111 112334455677899


Q ss_pred             HHHHcccCCCCCCC
Q 044568          236 VGLWCVQDEPALRP  249 (257)
Q Consensus       236 l~~~cl~~~p~~RP  249 (257)
                      ++.+||+.||.+||
T Consensus       223 li~~~L~~dp~~R~  236 (312)
T cd05585         223 LLIGLLSRDPTRRL  236 (312)
T ss_pred             HHHHHcCCCHHHcC
Confidence            99999999999997

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.1e-37  Score=267.08  Aligned_cols=237  Identities=15%  Similarity=0.095  Sum_probs=181.7

Q ss_pred             ccccceeeecccC-CCCCeeeccchhhh---HHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHH
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSWTAD---IEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDI   79 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~   79 (257)
                      +.++.||+++... ++.+++|.......   -+...+...-..+..+.|+|++++.+.+...+..++||||+++|+|.++
T Consensus        12 G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~   91 (333)
T cd05600          12 GGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAMEYVPGGDFRTL   91 (333)
T ss_pred             cCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEEeCCCCCCHHHH
Confidence            5689999999765 56677776542110   0000111111133477899999999999999999999999999999999


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcccccCCCCccC
Q 044568           80 IFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA  159 (257)
Q Consensus        80 l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~a  159 (257)
                      +.  ....+++.++..++.|++.||.|||++   +++||||+|+||+++.++.+||+|||++...........+++.|+|
T Consensus        92 l~--~~~~l~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~~~~~~~~gt~~y~a  166 (333)
T cd05600          92 LN--NLGVLSEDHARFYMAEMFEAVDALHEL---GYIHRDLKPENFLIDASGHIKLTDFGLSKGIVTYANSVVGSPDYMA  166 (333)
T ss_pred             HH--HcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEECCCCCEEEEeCcCCcccccccCCcccCccccC
Confidence            97  456789999999999999999999999   9999999999999999999999999998765554455678899999


Q ss_pred             cccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCC---CHHHHHHHHHH
Q 044568          160 PECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKV---DKKNLENLVKV  236 (257)
Q Consensus       160 PE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~l  236 (257)
                      ||.+.+..++.++|||||||++|||++|..||...........+..|.          ..+.....   .......+.++
T Consensus       167 PE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~----------~~~~~~~~~~~~~~~s~~~~~l  236 (333)
T cd05600         167 PEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNETWENLKYWK----------ETLQRPVYDDPRFNLSDEAWDL  236 (333)
T ss_pred             hhHhcCCCCCCccceecchHHHhhhhhCCCCCCCCCHHHHHHHHHhcc----------ccccCCCCCccccccCHHHHHH
Confidence            999998899999999999999999999999997552221111111110          01110100   11335678899


Q ss_pred             HHHcccCCCCCCC-hHHHHH
Q 044568          237 GLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       237 ~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +.+||+.+|.+|| +.|+++
T Consensus       237 i~~~l~~~~~rr~s~~~ll~  256 (333)
T cd05600         237 ITKLINDPSRRFGSLEDIKN  256 (333)
T ss_pred             HHHHhhChhhhcCCHHHHHh
Confidence            9999999999999 999975

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.6e-37  Score=264.94  Aligned_cols=242  Identities=16%  Similarity=0.157  Sum_probs=182.3

Q ss_pred             cccceeeec-ccCCCCCeeeccchhhhHH---HHhHhhhccccccccCCceeeeceeeeec--CceeEEEeecCCCCHHH
Q 044568            5 KLSNFYRSS-FNARNSPWISRVSWTADIE---VLSVAMRGSKCTRIRGGLLLNVPVRAKLT--SVSGKIERPVRNGSLTD   78 (257)
Q Consensus         5 ~~~~~y~~~-~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~h~~i~~~~~~~~~~--~~~~lV~E~~~~gsL~~   78 (257)
                      -++.|||++ ..+++.+++|++.|.++-+   ...+..+. .+.++.|+||+++.++....  ...|||+|||++ +|..
T Consensus       129 Tyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~-ILr~l~HpNIikL~eivt~~~~~siYlVFeYMdh-DL~G  206 (560)
T KOG0600|consen  129 TYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIK-ILRRLDHPNIIKLEEIVTSKLSGSIYLVFEYMDH-DLSG  206 (560)
T ss_pred             chhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHH-HHHhcCCCcccceeeEEEecCCceEEEEEecccc-hhhh
Confidence            468899999 6677788999988644111   11111111 33399999999999999876  689999999998 9999


Q ss_pred             HHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc----ccccCC
Q 044568           79 IIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF----VIDKRD  154 (257)
Q Consensus        79 ~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~----~~~~~~  154 (257)
                      ++.. ....|++.+++.++.||+.||.|+|++   +++|||||.+|||++++|.+||+|||++++.....    +...-|
T Consensus       207 Ll~~-p~vkft~~qIKc~mkQLl~Gl~~cH~~---gvlHRDIK~SNiLidn~G~LKiaDFGLAr~y~~~~~~~~T~rVvT  282 (560)
T KOG0600|consen  207 LLSS-PGVKFTEPQIKCYMKQLLEGLEYCHSR---GVLHRDIKGSNILIDNNGVLKIADFGLARFYTPSGSAPYTSRVVT  282 (560)
T ss_pred             hhcC-CCcccChHHHHHHHHHHHHHHHHHhhc---CeeeccccccceEEcCCCCEEeccccceeeccCCCCcccccceEE
Confidence            9975 567899999999999999999999999   99999999999999999999999999999654332    444556


Q ss_pred             CCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhh-------hh--hhhhcCC-
Q 044568          155 KGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINR-------EL--NKLVRGT-  223 (257)
Q Consensus       155 ~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~~~~-  223 (257)
                      .=|.|||.+.+. .|+.+.|+||.||++.||++|++.|++..+-+   ++..+..-+....       .+  ...+++. 
T Consensus       283 LWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~tEve---Ql~kIfklcGSP~e~~W~~~kLP~~~~~kp~~  359 (560)
T KOG0600|consen  283 LWYRPPELLLGATSYGTAVDLWSVGCILAELFLGKPILQGRTEVE---QLHKIFKLCGSPTEDYWPVSKLPHATIFKPQQ  359 (560)
T ss_pred             eeccChHHhcCCcccccceeehhhhHHHHHHHcCCCCcCCccHHH---HHHHHHHHhCCCChhccccccCCcccccCCCC
Confidence            669999999976 59999999999999999999999998763222   1111111111000       00  0111111 


Q ss_pred             -------CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          224 -------KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       224 -------~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                             +.....+....+|+..+|..||.+|. +.++++
T Consensus       360 ~y~r~l~E~~~~~~~~~l~Ll~~lL~ldP~kR~tA~~aL~  399 (560)
T KOG0600|consen  360 PYKRRLRETFKDFPASALDLLEKLLSLDPDKRGTASSALQ  399 (560)
T ss_pred             cccchHHHHhccCCHHHHHHHHHHhccCccccccHHHHhc
Confidence                   11223346788999999999999999 888764

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=100.00  E-value=6.1e-37  Score=255.99  Aligned_cols=227  Identities=16%  Similarity=0.200  Sum_probs=174.6

Q ss_pred             ccccceeeecccC----CCCCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEe
Q 044568            4 TKLSNFYRSSFNA----RNSPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIER   69 (257)
Q Consensus         4 ~~~~~~y~~~~~~----~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E   69 (257)
                      +.|+.||+|++..    +..+++|...          +.+|++.+.         +++|+|++++.+.+...+..++|||
T Consensus        16 G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~---------~l~h~~iv~~~~~~~~~~~~~lv~e   86 (266)
T cd05064          16 GRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLG---------QFDHSNIVRLEGVITRGNTMMIVTE   86 (266)
T ss_pred             cCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHh---------cCCCCCcCeEEEEEecCCCcEEEEE
Confidence            5689999997642    3345555433          223333333         7789999999999999999999999


Q ss_pred             ecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-
Q 044568           70 PVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-  148 (257)
Q Consensus        70 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-  148 (257)
                      |+++|+|.+++.. ....+++.+++.++.|++.||.|||++   +++|+||+|+||+++.++.++++|||......... 
T Consensus        87 ~~~~~~L~~~l~~-~~~~l~~~~~~~~~~~i~~al~~lH~~---~iiH~dikp~nili~~~~~~~l~dfg~~~~~~~~~~  162 (266)
T cd05064          87 YMSNGALDSFLRK-HEGQLVAGQLMGMLPGLASGMKYLSEM---GYVHKGLAAHKVLVNSDLVCKISGFRRLQEDKSEAI  162 (266)
T ss_pred             eCCCCcHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeeccccHhhEEEcCCCcEEECCCcccccccccch
Confidence            9999999999975 345789999999999999999999999   99999999999999999999999999765432111 


Q ss_pred             ---ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCC
Q 044568          149 ---VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTK  224 (257)
Q Consensus       149 ---~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (257)
                         ....++..|+|||.+.+..++.++||||||+++||+++ |..||.......   ....          ..... ...
T Consensus       163 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~~~~---~~~~----------~~~~~-~~~  228 (266)
T cd05064         163 YTTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDMSGQD---VIKA----------VEDGF-RLP  228 (266)
T ss_pred             hcccCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcCCHHH---HHHH----------HHCCC-CCC
Confidence               11223457999999998889999999999999999775 999996542111   0000          00000 112


Q ss_pred             CCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          225 VDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       225 ~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      .+...+..+.+++.+||+.+|.+|| ++||.+.|
T Consensus       229 ~~~~~~~~~~~li~~c~~~~p~~RP~~~~i~~~l  262 (266)
T cd05064         229 APRNCPNLLHQLMLDCWQKERGERPRFSQIHSIL  262 (266)
T ss_pred             CCCCCCHHHHHHHHHHcCCCchhCCCHHHHHHHH
Confidence            3445667899999999999999999 99998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=7.8e-38  Score=266.50  Aligned_cols=233  Identities=16%  Similarity=0.175  Sum_probs=183.1

Q ss_pred             ccccceeeecc-cCCCCCeeeccc--h--------hhhHHHHhHhhhcccccccc-CCceeeeceeeeecC-ceeEEEee
Q 044568            4 TKLSNFYRSSF-NARNSPWISRVS--W--------TADIEVLSVAMRGSKCTRIR-GGLLLNVPVRAKLTS-VSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~-~~~~~~~i~~~~--~--------~~~~~~~~~~~~~~~~~~~~-h~~i~~~~~~~~~~~-~~~lV~E~   70 (257)
                      +.|+.||+++- ..++.++||+..  |        .+|++.+.         ++. |+||+++...+.+.+ ..++||||
T Consensus        21 GTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~---------kln~hpniikL~Evi~d~~~~L~fVfE~   91 (538)
T KOG0661|consen   21 GTFGSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLR---------KLNPHPNIIKLKEVIRDNDRILYFVFEF   91 (538)
T ss_pred             CcceeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHH---------hcCCCCcchhhHHHhhccCceEeeeHHh
Confidence            45889999995 455556776533  2        34444444         888 999999999988877 99999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC--CCc
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN--EDF  148 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~--~~~  148 (257)
                      |+. +|++++.+ .++.|++.+++.|+.||++||+|+|++   |+.|||+||+|||+.....+||+|||+++...  .+.
T Consensus        92 Md~-NLYqLmK~-R~r~fse~~irnim~QilqGL~hiHk~---GfFHRDlKPENiLi~~~~~iKiaDFGLARev~SkpPY  166 (538)
T KOG0661|consen   92 MDC-NLYQLMKD-RNRLFSESDIRNIMYQILQGLAHIHKH---GFFHRDLKPENILISGNDVIKIADFGLAREVRSKPPY  166 (538)
T ss_pred             hhh-hHHHHHhh-cCCcCCHHHHHHHHHHHHHHHHHHHhc---CcccccCChhheEecccceeEecccccccccccCCCc
Confidence            976 99999998 588999999999999999999999999   99999999999999988899999999998643  344


Q ss_pred             ccccCCCCccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHH---------H----------
Q 044568          149 VIDKRDKGYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWV---------Y----------  208 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~---------~----------  208 (257)
                      +....|.=|+|||++.. +.|+.+.|+||+||+++|+.+-++.|.+..+-+.--.++...         .          
T Consensus       167 TeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~Dqi~KIc~VLGtP~~~~~~eg~~La~~mnf  246 (538)
T KOG0661|consen  167 TEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGASEIDQIYKICEVLGTPDKDSWPEGYNLASAMNF  246 (538)
T ss_pred             chhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHhCCCccccchhHHHHHHHhcc
Confidence            66677778999999875 468999999999999999999999998874444322222221         0          


Q ss_pred             --HhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHh
Q 044568          209 --KCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMM  256 (257)
Q Consensus       209 --~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~  256 (257)
                        +......+..+     .+. +..+..+|+.+|+.+||.+|| +.|.++.
T Consensus       247 ~~P~~~~~~l~~L-----~p~-~s~~~~~li~~ll~WDP~kRpTA~~al~~  291 (538)
T KOG0661|consen  247 RFPQVKPSPLKDL-----LPN-ASSEAASLIERLLAWDPDKRPTASQALQH  291 (538)
T ss_pred             CCCcCCCCChHHh-----Ccc-cCHHHHHHHHHHhcCCCccCccHHHHhcC
Confidence              00111111111     122 668899999999999999999 9998864

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=100.00  E-value=1.3e-36  Score=252.30  Aligned_cols=227  Identities=16%  Similarity=0.224  Sum_probs=178.2

Q ss_pred             ccccceeeecccCCCCCeeeccc--------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS--------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGS   75 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gs   75 (257)
                      +.++.||+++..++...++|...        +.+|++.+.         ++.|+|++++.+.+...+..++||||+++|+
T Consensus        15 G~~~~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~e~~~l~---------~l~h~~i~~~~~~~~~~~~~~iv~e~~~~~~   85 (256)
T cd05114          15 GQFGVVHLGKWRAQIKVAIKAINEGAMSEEDFIEEAKVMM---------KLSHPKLVQLYGVCTQQKPLYIVTEFMENGC   85 (256)
T ss_pred             CcCceEEEEEeccCceEEEEecccCCccHHHHHHHHHHHH---------HCCCCCceeEEEEEccCCCEEEEEEcCCCCc
Confidence            46889999998887777777533        334444444         8899999999999999999999999999999


Q ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc----ccc
Q 044568           76 LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF----VID  151 (257)
Q Consensus        76 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~----~~~  151 (257)
                      |.+++.. ....+++..+..++.|++.||.|||++   +++|+|++|+||+++.++.++++|||.+.......    ...
T Consensus        86 L~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~~~~~~~~  161 (256)
T cd05114          86 LLNYLRQ-RQGKLSKDMLLSMCQDVCEGMEYLERN---SFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTSSSGA  161 (256)
T ss_pred             HHHHHHh-CccCCCHHHHHHHHHHHHHHHHHHHHC---CccccccCcceEEEcCCCeEEECCCCCccccCCCceeccCCC
Confidence            9999975 334689999999999999999999999   99999999999999999999999999886432211    111


Q ss_pred             cCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHH
Q 044568          152 KRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNL  230 (257)
Q Consensus       152 ~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (257)
                      .++..|+|||.+....++.++|+||||+++||+++ |+.||.......   .....     ...      .....+....
T Consensus       162 ~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~~~~---~~~~i-----~~~------~~~~~~~~~~  227 (256)
T cd05114         162 KFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKSNYE---VVEMI-----SRG------FRLYRPKLAS  227 (256)
T ss_pred             CCchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCCCCHHH---HHHHH-----HCC------CCCCCCCCCC
Confidence            23456999999988888999999999999999999 899996542111   11100     000      0001122234


Q ss_pred             HHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          231 ENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       231 ~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ..+.+++.+||+.+|.+|| ++|+++.|
T Consensus       228 ~~~~~li~~c~~~~p~~Rps~~~l~~~l  255 (256)
T cd05114         228 MTVYEVMYSCWHEKPEGRPTFAELLRAI  255 (256)
T ss_pred             HHHHHHHHHHccCCcccCcCHHHHHHhh
Confidence            6789999999999999999 99999875

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=100.00  E-value=1e-36  Score=256.39  Aligned_cols=228  Identities=18%  Similarity=0.254  Sum_probs=178.0

Q ss_pred             ccccceeeecccCCC------CCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEE
Q 044568            4 TKLSNFYRSSFNARN------SPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~------~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV   67 (257)
                      +.++.||++......      .+++|...          +.+|++.+.         ++.|+|++++.+.+...+..+++
T Consensus        16 G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~---------~l~h~~i~~~~~~~~~~~~~~~~   86 (283)
T cd05048          16 GAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMS---------DLQHPNIVCLLGVCTKEQPTCML   86 (283)
T ss_pred             ccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHH---------hcCCcccceEEEEEcCCCceEEE
Confidence            467899999865544      45566543          233444433         78899999999999999999999


Q ss_pred             EeecCCCCHHHHHhccCC--------------CCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCce
Q 044568           68 ERPVRNGSLTDIIFCSAE--------------RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA  133 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~~--------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~  133 (257)
                      |||+++|+|.+++.....              ..+++.+...++.|++.||.|||++   +++|+||+|+||++++++.+
T Consensus        87 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~---~i~H~dlkp~Nil~~~~~~~  163 (283)
T cd05048          87 FEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSH---HFVHRDLAARNCLVGEGLTV  163 (283)
T ss_pred             EecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccccccceEEEcCCCcE
Confidence            999999999999974311              5688899999999999999999999   99999999999999999999


Q ss_pred             EEeeecccccCCCCc-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHH
Q 044568          134 KILDFGLAKLPNEDF-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWV  207 (257)
Q Consensus       134 kl~dfg~~~~~~~~~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~  207 (257)
                      +|+|||++.......     ....+++.|+|||.+.+..++.++|+||||+++|||++ |..||.......    .... 
T Consensus       164 ~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~~~~~----~~~~-  238 (283)
T cd05048         164 KISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFSNQE----VIEM-  238 (283)
T ss_pred             EECCCcceeeccccccccccCCCcccccccCHHHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCCCHHH----HHHH-
Confidence            999999986432221     23344677999999988889999999999999999998 999997542111    1000 


Q ss_pred             HHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          208 YKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                         .....      ....+...+.++.+++.+||+.||.+|| ++||++.|
T Consensus       239 ---i~~~~------~~~~~~~~~~~~~~l~~~c~~~~p~~Rp~~~~i~~~l  280 (283)
T cd05048         239 ---IRSRQ------LLPCPEDCPARVYALMIECWNEIPARRPRFKDIHTRL  280 (283)
T ss_pred             ---HHcCC------cCCCcccCCHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence               00000      1123455678899999999999999999 99999875

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=100.00  E-value=1.4e-36  Score=252.77  Aligned_cols=228  Identities=17%  Similarity=0.270  Sum_probs=180.2

Q ss_pred             ccccceeeecccCCCCCeeeccch--------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVSW--------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGS   75 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~~--------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gs   75 (257)
                      +.++.||++...++..+++|...-        .+|++.+.         ++.|+|++++.+.+...+..++||||+++|+
T Consensus        17 g~~g~v~~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~---------~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   87 (261)
T cd05072          17 GQFGEVWMGYYNNSTKVAVKTLKPGTMSVQAFLEEANLMK---------TLQHDKLVRLYAVVTKEEPIYIITEYMAKGS   87 (261)
T ss_pred             cCCceEEEEEecCCceEEEEEccCCchhHHHHHHHHHHHH---------hCCCCCeeeEEEEEcCCCCcEEEEecCCCCc
Confidence            568899999988888788876442        23333333         7889999999999999999999999999999


Q ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc----ccc
Q 044568           76 LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF----VID  151 (257)
Q Consensus        76 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~----~~~  151 (257)
                      |.+++.......+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++++|||.+.......    ...
T Consensus        88 L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~~---~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~  164 (261)
T cd05072          88 LLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERK---NYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGA  164 (261)
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccchhhEEecCCCcEEECCCccceecCCCceeccCCC
Confidence            99999764566789999999999999999999999   99999999999999999999999999987544322    122


Q ss_pred             cCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHH
Q 044568          152 KRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNL  230 (257)
Q Consensus       152 ~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (257)
                      .++..|+|||.+....++.++|+||||+++|++++ |..||......   ... ...         ..... .+.....+
T Consensus       165 ~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~---~~~-~~~---------~~~~~-~~~~~~~~  230 (261)
T cd05072         165 KFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSNS---DVM-SAL---------QRGYR-MPRMENCP  230 (261)
T ss_pred             ccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCCCHH---HHH-HHH---------HcCCC-CCCCCCCC
Confidence            33456999999988888999999999999999998 99999644211   111 110         00001 11122345


Q ss_pred             HHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          231 ENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       231 ~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ..+.+++.+||+.+|++|| ++++.++|
T Consensus       231 ~~~~~li~~~l~~~p~~Rp~~~~i~~~l  258 (261)
T cd05072         231 DELYDIMKTCWKEKAEERPTFDYLQSVL  258 (261)
T ss_pred             HHHHHHHHHHccCCcccCcCHHHHHHHH
Confidence            6789999999999999999 99998875

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=100.00  E-value=8.3e-37  Score=262.32  Aligned_cols=226  Identities=16%  Similarity=0.145  Sum_probs=173.7

Q ss_pred             ccccceeeeccc-CCCCCeeeccchhh---hHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHH
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSWTA---DIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDI   79 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~   79 (257)
                      +.++.||+++.. +++.+++|...-..   ..+.......-..+.++.|+|++++.+.+...+..++||||+++|+|.++
T Consensus         6 G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~   85 (323)
T cd05571           6 GTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANGGELFFH   85 (323)
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCCCcHHHH
Confidence            568999999865 45566777544211   11111111111133488999999999999999999999999999999999


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC---CCcccccCCCC
Q 044568           80 IFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN---EDFVIDKRDKG  156 (257)
Q Consensus        80 l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~---~~~~~~~~~~~  156 (257)
                      +.  ....+++.++..++.|++.||.|||++   +|+||||||+||+++.++.+||+|||+++...   .......+|+.
T Consensus        86 l~--~~~~~~~~~~~~~~~qi~~~L~~lH~~---~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~gt~~  160 (323)
T cd05571          86 LS--RERVFSEDRARFYGAEIVSALGYLHSC---DVVYRDLKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPE  160 (323)
T ss_pred             HH--HcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEeCCCCHHHEEECCCCCEEEeeCCCCcccccCCCcccceecCcc
Confidence            97  456789999999999999999999999   99999999999999999999999999986422   22234568899


Q ss_pred             ccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHH
Q 044568          157 YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKV  236 (257)
Q Consensus       157 ~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  236 (257)
                      |+|||.+.+..++.++||||+||++|||++|+.||.....   .......            ......++......+.++
T Consensus       161 y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~---~~~~~~~------------~~~~~~~p~~~~~~~~~l  225 (323)
T cd05571         161 YLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH---EKLFELI------------LMEEIRFPRTLSPEAKSL  225 (323)
T ss_pred             ccChhhhcCCCCCccccCcccchhhhhhhcCCCCCCCCCH---HHHHHHH------------HcCCCCCCCCCCHHHHHH
Confidence            9999999988899999999999999999999999975411   1000000            001113344456778999


Q ss_pred             HHHcccCCCCCCC
Q 044568          237 GLWCVQDEPALRP  249 (257)
Q Consensus       237 ~~~cl~~~p~~RP  249 (257)
                      +.+||+.||++||
T Consensus       226 i~~~L~~dP~~R~  238 (323)
T cd05571         226 LAGLLKKDPKQRL  238 (323)
T ss_pred             HHHHccCCHHHcC
Confidence            9999999999998

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=100.00  E-value=3.4e-36  Score=259.41  Aligned_cols=236  Identities=18%  Similarity=0.186  Sum_probs=176.9

Q ss_pred             ccccceeeecccCCCC-Ceeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSFNARNS-PWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~-~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +.++.||+++...++. +++|...          +.+|++.+.         ++.|+|++++.+.+...+..++||||++
T Consensus        16 G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~~~~~~~lv~e~~~   86 (331)
T cd06649          16 GNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLH---------ECNSPYIVGFYGAFYSDGEISICMEHMD   86 (331)
T ss_pred             CCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHH---------HCCCCCCCeEEEEEEECCEEEEEeecCC
Confidence            5688999999765544 4455432          334444444         8889999999999999999999999999


Q ss_pred             CCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC-Ccccc
Q 044568           73 NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE-DFVID  151 (257)
Q Consensus        73 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~-~~~~~  151 (257)
                      +|+|.+++.  ....+++..+..++.|++.||.|||++.  +++|+||||+||+++.++.++|+|||++..... .....
T Consensus        87 ~~~L~~~l~--~~~~~~~~~~~~~~~~i~~~l~~lH~~~--~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~  162 (331)
T cd06649          87 GGSLDQVLK--EAKRIPEEILGKVSIAVLRGLAYLREKH--QIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSF  162 (331)
T ss_pred             CCcHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHhhcC--CEEcCCCChhhEEEcCCCcEEEccCcccccccccccccC
Confidence            999999997  4456899999999999999999999861  599999999999999999999999999875432 22344


Q ss_pred             cCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhh--------------------
Q 044568          152 KRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCF--------------------  211 (257)
Q Consensus       152 ~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~--------------------  211 (257)
                      .++..|+|||.+.+..++.++|||||||++|||++|+.||.......-   ......+..                    
T Consensus       163 ~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (331)
T cd06649         163 VGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPPPDAKEL---EAIFGRPVVDGEEGEPHSISPRPRPPGRP  239 (331)
T ss_pred             CCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHH---HHHhcccccccccCCccccCccccccccc
Confidence            678899999999988899999999999999999999999964421110   000000000                    


Q ss_pred             ------------hhhhhhh-hhc---CCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          212 ------------INRELNK-LVR---GTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       212 ------------~~~~~~~-~~~---~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                                  ....... +..   +..........+.+++.+||+.||++|| +.|+++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~~P~~Rpt~~ell~  300 (331)
T cd06649         240 VSGHGMDSRPAMAIFELLDYIVNEPPPKLPNGVFTPDFQEFVNKCLIKNPAERADLKMLMN  300 (331)
T ss_pred             ccccccccccchhHHHHHHHHHhCCCcCCCCccccHHHHHHHHHHccCCcccCCCHHHHhc
Confidence                        0000000 000   0011123456799999999999999999 999975

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=100.00  E-value=2.9e-36  Score=256.57  Aligned_cols=235  Identities=17%  Similarity=0.206  Sum_probs=174.3

Q ss_pred             ccccceeeecccCCC-----------------CCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeece
Q 044568            4 TKLSNFYRSSFNARN-----------------SPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPV   56 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~-----------------~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~   56 (257)
                      +.++.||++...++.                 .+++|...          +.+|++.+.         ++.|+|++++.+
T Consensus        16 G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~---------~l~h~niv~~~~   86 (304)
T cd05096          16 GQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILS---------RLKDPNIIRLLG   86 (304)
T ss_pred             cCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHh---------hcCCCCeeEEEE
Confidence            578999998754332                 35665432          334444444         789999999999


Q ss_pred             eeeecCceeEEEeecCCCCHHHHHhccC-----------------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeecc
Q 044568           57 RAKLTSVSGKIERPVRNGSLTDIIFCSA-----------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCD  119 (257)
Q Consensus        57 ~~~~~~~~~lV~E~~~~gsL~~~l~~~~-----------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~d  119 (257)
                      .+...+..++||||+++|+|.+++....                 ...+++.+...++.|++.||.|||++   +++|+|
T Consensus        87 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~ivH~d  163 (304)
T cd05096          87 VCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSL---NFVHRD  163 (304)
T ss_pred             EEecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHC---CccccC
Confidence            9999999999999999999999986421                 13467888999999999999999999   999999


Q ss_pred             CCCCceeeCCCCceEEeeecccccCCCCc-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh--cCCCCC
Q 044568          120 IKPQNILMDEFWTAKILDFGLAKLPNEDF-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC--CRKNME  192 (257)
Q Consensus       120 l~~~nil~~~~~~~kl~dfg~~~~~~~~~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~--g~~pf~  192 (257)
                      |||+||+++.++.+||+|||+++......     ....++..|+|||.+....++.++||||||+++|||++  +..||.
T Consensus       164 lkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~  243 (304)
T cd05096         164 LATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEILMLCKEQPYG  243 (304)
T ss_pred             cchhheEEcCCccEEECCCccceecccCceeEecCcCCCCccccCHHHHhcCCCCchhhhHHHHHHHHHHHHccCCCCCC
Confidence            99999999999999999999987532221     12234667999999988889999999999999999987  566776


Q ss_pred             cCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          193 IDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ......   ... ........... ..  ....+..++..+.+++.+||+.||++|| +.||.+.|
T Consensus       244 ~~~~~~---~~~-~~~~~~~~~~~-~~--~~~~~~~~~~~~~~li~~cl~~~p~~RPs~~~i~~~l  302 (304)
T cd05096         244 ELTDEQ---VIE-NAGEFFRDQGR-QV--YLFRPPPCPQGLYELMLQCWSRDCRERPSFSDIHAFL  302 (304)
T ss_pred             cCCHHH---HHH-HHHHHhhhccc-cc--cccCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHH
Confidence            432111   111 11111100000 00  0012234567899999999999999999 99998875

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-38  Score=282.35  Aligned_cols=225  Identities=19%  Similarity=0.262  Sum_probs=185.7

Q ss_pred             ccccceeeecccCCC----CCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEe
Q 044568            4 TKLSNFYRSSFNARN----SPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIER   69 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~----~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E   69 (257)
                      +.|++||+|.+....    .++||.+.          |..|.-.++         +..||||+++.|........+||+|
T Consensus       640 GEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMG---------QFdHPNIIrLEGVVTks~PvMIiTE  710 (996)
T KOG0196|consen  640 GEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMG---------QFDHPNIIRLEGVVTKSKPVMIITE  710 (996)
T ss_pred             ccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcc---------cCCCCcEEEEEEEEecCceeEEEhh
Confidence            468999999987665    34666543          555555555         8999999999999999999999999


Q ss_pred             ecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcc
Q 044568           70 PVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFV  149 (257)
Q Consensus        70 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~  149 (257)
                      ||++|+|+.+|+. .++.+++.+...++++|+.|+.||.+.   +.+||||.++|||++.+-.+|++|||+++...++..
T Consensus       711 yMENGsLDsFLR~-~DGqftviQLVgMLrGIAsGMkYLsdm---~YVHRDLAARNILVNsnLvCKVsDFGLSRvledd~~  786 (996)
T KOG0196|consen  711 YMENGSLDSFLRQ-NDGQFTVIQLVGMLRGIASGMKYLSDM---NYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPE  786 (996)
T ss_pred             hhhCCcHHHHHhh-cCCceEeehHHHHHHHHHHHhHHHhhc---CchhhhhhhhheeeccceEEEeccccceeecccCCC
Confidence            9999999999998 667799999999999999999999999   999999999999999999999999999997654432


Q ss_pred             cc----cC--CCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcC
Q 044568          150 ID----KR--DKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRG  222 (257)
Q Consensus       150 ~~----~~--~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (257)
                      ..    -|  ..+|.|||.+...+++.+||+||||+++||.++ |..||=.-..+                ..+...-++
T Consensus       787 ~~ytt~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYWdmSNQ----------------dVIkaIe~g  850 (996)
T KOG0196|consen  787 AAYTTLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQ----------------DVIKAIEQG  850 (996)
T ss_pred             ccccccCCccceeecChhHhhhcccCchhhccccceEEEEecccCCCcccccchH----------------HHHHHHHhc
Confidence            11    11  246999999999999999999999999999998 88887422111                111222222


Q ss_pred             C--CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          223 T--KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       223 ~--~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      -  +.|.+++..|.+|++.||++|..+|| +.+|+..|
T Consensus       851 yRLPpPmDCP~aL~qLMldCWqkdR~~RP~F~qiV~~l  888 (996)
T KOG0196|consen  851 YRLPPPMDCPAALYQLMLDCWQKDRNRRPKFAQIVSTL  888 (996)
T ss_pred             cCCCCCCCCcHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Confidence            2  55778999999999999999999999 99998764

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=5.3e-37  Score=264.14  Aligned_cols=222  Identities=18%  Similarity=0.205  Sum_probs=183.2

Q ss_pred             ceeeecccCCCCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCc-eeEEEeecCCCC
Q 044568            8 NFYRSSFNARNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSV-SGKIERPVRNGS   75 (257)
Q Consensus         8 ~~y~~~~~~~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~-~~lV~E~~~~gs   75 (257)
                      ..++.+..+. ..++|+++.           .+|+++++         +++|||||.+...+..++. .+|||+||+||+
T Consensus        21 ~lvrhk~~~~-~~vlK~I~l~~~t~~~r~~A~~E~~lis---------~~~hP~iv~y~ds~~~~~~~l~Ivm~Y~eGg~   90 (426)
T KOG0589|consen   21 LLVRHKSDDK-LYVLKKINLEKLTEPERRSAIQEMDLLS---------KLLHPNIVEYKDSFEEDGQLLCIVMEYCEGGD   90 (426)
T ss_pred             hhhhhccCCc-eEEEEEEeccccCchhhHHHHHHHHHHH---------hccCCCeeeeccchhcCCceEEEEEeecCCCC
Confidence            3444444443 677777764           23444444         8999999999999999998 999999999999


Q ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---ccccc
Q 044568           76 LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---FVIDK  152 (257)
Q Consensus        76 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~~~~~  152 (257)
                      +.+.|.+..+..++++....|+.|++.|+.|||++   +|+|||||+.||++..+..++|+|||+++.....   .....
T Consensus        91 l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~~---~iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~~~~~~a~tvv  167 (426)
T KOG0589|consen   91 LAQLIKEQKGVLFPEERILKWFVQILLAVNYLHEN---RVLHRDLKCANIFLTKDKKVKLGDFGLAKILNPEDSLASTVV  167 (426)
T ss_pred             HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhh---hhhcccchhhhhhccccCceeecchhhhhhcCCchhhhheec
Confidence            99999986667899999999999999999999999   9999999999999999999999999999976554   36679


Q ss_pred             CCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHH
Q 044568          153 RDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLEN  232 (257)
Q Consensus       153 ~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (257)
                      ||+.|++||.+.+.+|+.|+||||+||++|||++-+++|...+...       ...+     .......  +.+.....+
T Consensus       168 GTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~~m~~-------Li~k-----i~~~~~~--Plp~~ys~e  233 (426)
T KOG0589|consen  168 GTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKASNMSE-------LILK-----INRGLYS--PLPSMYSSE  233 (426)
T ss_pred             CCCcccCHHHhCCCCCCccCcchhhcchHHHHHhcccccCccchHH-------HHHH-----HhhccCC--CCCccccHH
Confidence            9999999999999999999999999999999999999998663221       1111     1111111  445566788


Q ss_pred             HHHHHHHcccCCCCCCC-hHHHHHh
Q 044568          233 LVKVGLWCVQDEPALRP-MKCAVMM  256 (257)
Q Consensus       233 l~~l~~~cl~~~p~~RP-~~ei~~~  256 (257)
                      +..++..|++.+|+.|| +.+++..
T Consensus       234 l~~lv~~~l~~~P~~RPsa~~LL~~  258 (426)
T KOG0589|consen  234 LRSLVKSMLRKNPEHRPSALELLRR  258 (426)
T ss_pred             HHHHHHHHhhcCCccCCCHHHHhhC
Confidence            99999999999999999 9999863

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=100.00  E-value=1.9e-36  Score=265.13  Aligned_cols=229  Identities=19%  Similarity=0.230  Sum_probs=173.1

Q ss_pred             ccccceeeecc------cCCCCCeeeccc----------hhhhHHHHhHhhhccccccc-cCCceeeeceeeeecCceeE
Q 044568            4 TKLSNFYRSSF------NARNSPWISRVS----------WTADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVSGK   66 (257)
Q Consensus         4 ~~~~~~y~~~~------~~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~~l   66 (257)
                      +.|+.||++..      .+...+++|...          +.+|++.+.         .+ .|+||+++.+.+...+..++
T Consensus        49 G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~---------~l~~h~nIv~~~~~~~~~~~~~l  119 (374)
T cd05106          49 GAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILS---------HLGQHKNIVNLLGACTHGGPVLV  119 (374)
T ss_pred             CCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHH---------hhccCCceeeEeeEecCCCCeEE
Confidence            46889998763      233457777653          223443333         55 79999999999999999999


Q ss_pred             EEeecCCCCHHHHHhccC--------------------------------------------------------------
Q 044568           67 IERPVRNGSLTDIIFCSA--------------------------------------------------------------   84 (257)
Q Consensus        67 V~E~~~~gsL~~~l~~~~--------------------------------------------------------------   84 (257)
                      ||||+++|+|.++++...                                                              
T Consensus       120 v~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (374)
T cd05106         120 ITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSSQSSDSKD  199 (374)
T ss_pred             eHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCccccccccccccc
Confidence            999999999999986321                                                              


Q ss_pred             ------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcc-----cccC
Q 044568           85 ------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFV-----IDKR  153 (257)
Q Consensus        85 ------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~-----~~~~  153 (257)
                            ...+++.++..++.|++.||.|||++   +++||||||+||++++++.++|+|||++........     ...+
T Consensus       200 ~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~---giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~  276 (374)
T cd05106         200 EEDTEDSWPLDLDDLLRFSSQVAQGMDFLASK---NCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYVVKGNARL  276 (374)
T ss_pred             hhccCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CEEeccCchheEEEeCCCeEEEeeceeeeeccCCcceeeccCCCC
Confidence                  12478888999999999999999999   999999999999999999999999999864332211     1123


Q ss_pred             CCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHH
Q 044568          154 DKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLEN  232 (257)
Q Consensus       154 ~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (257)
                      +..|+|||.+.+..++.++||||||+++|||++ |+.||........   .....         ..... ...+...+..
T Consensus       277 ~~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~~~---~~~~~---------~~~~~-~~~~~~~~~~  343 (374)
T cd05106         277 PVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGILVNSK---FYKMV---------KRGYQ-MSRPDFAPPE  343 (374)
T ss_pred             ccceeCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCccccccHH---HHHHH---------HcccC-ccCCCCCCHH
Confidence            456999999988889999999999999999997 9999975422111   00000         00000 0112223567


Q ss_pred             HHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          233 LVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       233 l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      +.+++.+||+.||.+|| +.+++++|
T Consensus       344 l~~li~~cl~~dp~~RPs~~~l~~~l  369 (374)
T cd05106         344 IYSIMKMCWNLEPTERPTFSQISQLI  369 (374)
T ss_pred             HHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            89999999999999999 99999875

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=6.1e-36  Score=249.00  Aligned_cols=228  Identities=22%  Similarity=0.329  Sum_probs=179.9

Q ss_pred             ccccceeeecccCCCCCeeeccc--------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS--------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGS   75 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gs   75 (257)
                      +.++.||++....+..+++|...        +.+|++.+.         ++.|+|++++.+.+...+..++||||+++++
T Consensus        17 g~~~~v~~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~---------~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   87 (261)
T cd05068          17 GQFGEVWEGLWNNTTPVAVKTLKPGTMDPKDFLAEAQIMK---------KLRHPKLIQLYAVCTLEEPIYIVTELMKYGS   87 (261)
T ss_pred             cCCccEEEEEecCCeEEEEEeeCCCcccHHHHHHHHHHHH---------HCCCCCccceeEEEecCCCeeeeeecccCCc
Confidence            46789999998887778887654        233444444         7889999999999999999999999999999


Q ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-ccccC-
Q 044568           76 LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-VIDKR-  153 (257)
Q Consensus        76 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-~~~~~-  153 (257)
                      |.+++.......+++.++..++.|++.|+.|||++   +++|+||+|+||+++.++.++|+|||++....... ....+ 
T Consensus        88 L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~  164 (261)
T cd05068          88 LLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQ---NYIHRDLAARNVLVGENNICKVADFGLARVIKEDIYEAREGA  164 (261)
T ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCCcceEEEcCCCCEEECCcceEEEccCCcccccCCC
Confidence            99999754446789999999999999999999999   99999999999999999999999999987544221 11122 


Q ss_pred             --CCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHH
Q 044568          154 --DKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNL  230 (257)
Q Consensus       154 --~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (257)
                        +..|+|||.+.+..++.++|+||||+++||+++ |+.||......   ......          .... ....+...+
T Consensus       165 ~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~---~~~~~~----------~~~~-~~~~~~~~~  230 (261)
T cd05068         165 KFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMTNA---EVLQQV----------DQGY-RMPCPPGCP  230 (261)
T ss_pred             cCceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHH---HHHHHH----------HcCC-CCCCCCcCC
Confidence              246999999988889999999999999999999 99999644211   111000          0000 011233455


Q ss_pred             HHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          231 ENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       231 ~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ..+.+++.+||+.+|.+|| +.++++.|
T Consensus       231 ~~~~~li~~~l~~~P~~Rp~~~~l~~~l  258 (261)
T cd05068         231 KELYDIMLDCWKEDPDDRPTFETLQWKL  258 (261)
T ss_pred             HHHHHHHHHHhhcCcccCCCHHHHHHHH
Confidence            7899999999999999999 99998865

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=100.00  E-value=2.7e-36  Score=254.43  Aligned_cols=238  Identities=14%  Similarity=0.112  Sum_probs=176.4

Q ss_pred             ccccceeeecccCC-CCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            4 TKLSNFYRSSFNAR-NSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~~~-~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      +.++.||+++...+ ..+++|....           .+|++.+.         .+.|+|++++.+.+...+..++||||+
T Consensus        12 g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~~~~~~~lv~e~~   82 (287)
T cd07848          12 GAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLR---------TLKQENIVELKEAFRRRGKLYLVFEYV   82 (287)
T ss_pred             cCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHH---------hCCCccccchhhhEecCCEEEEEEecC
Confidence            56889999998654 4566765432           23444444         888999999999999999999999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC----
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED----  147 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~----  147 (257)
                      +++++..+..  ....+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.+||+|||++......    
T Consensus        83 ~~~~l~~~~~--~~~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~  157 (287)
T cd07848          83 EKNMLELLEE--MPNGVPPEKVRSYIYQLIKAIHWCHKN---DIVHRDIKPENLLISHNDVLKLCDFGFARNLSEGSNAN  157 (287)
T ss_pred             CCCHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCcEEEeeccCccccccccccc
Confidence            9877765554  456799999999999999999999999   9999999999999999999999999998754322    


Q ss_pred             cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHH--------hhhhhhhhhh
Q 044568          148 FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYK--------CFINRELNKL  219 (257)
Q Consensus       148 ~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~  219 (257)
                      .....++..|+|||.+.+..++.++|+||+||++|||++|+.||.................+        ..........
T Consensus       158 ~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (287)
T cd07848         158 YTEYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGESEIDQLFTIQKVLGPLPAEQMKLFYSNPRFHGL  237 (287)
T ss_pred             ccccccccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhhCCCCHHHHHhhhccchhccc
Confidence            12346788899999998888999999999999999999999999765322211111111000        0000000000


Q ss_pred             hcCC---------CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          220 VRGT---------KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       220 ~~~~---------~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ..+.         .........+.+++.+||+.||++|| ++|+++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~~P~~R~s~~~~l~  283 (287)
T cd07848         238 RFPAVNHPQSLERRYLGILSGVLLDLMKNLLKLNPTDRYLTEQCLN  283 (287)
T ss_pred             ccCcccCcccHHHhhhcccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence            0000         00112346799999999999999999 999975

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=100.00  E-value=4.6e-36  Score=250.10  Aligned_cols=228  Identities=18%  Similarity=0.202  Sum_probs=178.1

Q ss_pred             ccccceeeecccC-CCCCeeeccc--------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCC
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS--------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNG   74 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~g   74 (257)
                      +.++.||++...+ +..+++|...        +.+|++.+.         ++.|+|++++.+.+...+..++||||++++
T Consensus        17 g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~e~~~l~---------~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~   87 (263)
T cd05052          17 GQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMK---------EIKHPNLVQLLGVCTREPPFYIITEFMTYG   87 (263)
T ss_pred             cccceEEEEEEecCCceEEEEEecCCchHHHHHHHHHHHHH---------hCCCCChhheEEEEcCCCCcEEEEEeCCCC
Confidence            4578899998765 4455666433        334444444         788999999999999999999999999999


Q ss_pred             CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcc----c
Q 044568           75 SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFV----I  150 (257)
Q Consensus        75 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~----~  150 (257)
                      +|.+++.......+++..+..++.|++.||.|||++   +++|+||+|+||++++++.++|+|||.+........    .
T Consensus        88 ~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~~~~~~~~  164 (263)
T cd05052          88 NLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAG  164 (263)
T ss_pred             cHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CEeecccCcceEEEcCCCcEEeCCCccccccccceeeccCC
Confidence            999999754456789999999999999999999999   999999999999999999999999999875433221    1


Q ss_pred             ccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHH
Q 044568          151 DKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKN  229 (257)
Q Consensus       151 ~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (257)
                      ...+..|+|||.+.+..++.++|+||||+++|||++ |..||.......   ....          ..... ....+...
T Consensus       165 ~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~---~~~~----------~~~~~-~~~~~~~~  230 (263)
T cd05052         165 AKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ---VYEL----------LEKGY-RMERPEGC  230 (263)
T ss_pred             CCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHH---HHHH----------HHCCC-CCCCCCCC
Confidence            123456999999988889999999999999999998 899986442111   0000          00000 11233445


Q ss_pred             HHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          230 LENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       230 ~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      +..+.+++.+||+.+|++|| +.++++.|
T Consensus       231 ~~~~~~li~~cl~~~p~~Rp~~~~l~~~l  259 (263)
T cd05052         231 PPKVYELMRACWQWNPSDRPSFAEIHQAF  259 (263)
T ss_pred             CHHHHHHHHHHccCCcccCCCHHHHHHHH
Confidence            67899999999999999999 99998875

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=100.00  E-value=2.8e-36  Score=264.15  Aligned_cols=230  Identities=19%  Similarity=0.238  Sum_probs=173.4

Q ss_pred             cccccceeeecc------cCCCCCeeeccc----------hhhhHHHHhHhhhccccccc-cCCceeeeceeeeecCcee
Q 044568            3 CTKLSNFYRSSF------NARNSPWISRVS----------WTADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVSG   65 (257)
Q Consensus         3 ~~~~~~~y~~~~------~~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~~   65 (257)
                      .+.|+.||+++.      ..+..+++|...          +.+|++.+.         .+ .|+||+++.+.+...+..+
T Consensus        45 ~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~---------~l~~HpnIv~l~~~~~~~~~~~  115 (375)
T cd05104          45 AGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLS---------YLGNHINIVNLLGACTVGGPTL  115 (375)
T ss_pred             CCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHH---------HhcCCcceeeeeeeeccCCcce
Confidence            357899999863      233456676543          223444443         55 7999999999999999999


Q ss_pred             EEEeecCCCCHHHHHhccC-------------------------------------------------------------
Q 044568           66 KIERPVRNGSLTDIIFCSA-------------------------------------------------------------   84 (257)
Q Consensus        66 lV~E~~~~gsL~~~l~~~~-------------------------------------------------------------   84 (257)
                      +|||||++|+|.+++....                                                             
T Consensus       116 lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (375)
T cd05104         116 VITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSVRSGSYI  195 (375)
T ss_pred             eeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCcccccccccccccccccceec
Confidence            9999999999999996421                                                             


Q ss_pred             ------------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcc---
Q 044568           85 ------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFV---  149 (257)
Q Consensus        85 ------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~---  149 (257)
                                  ...+++..+..++.|++.||.|||++   +++||||||.||+++.++.+||+|||++........   
T Consensus       196 ~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~  272 (375)
T cd05104         196 DQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLASK---NCIHRDLAARNILLTHGRITKICDFGLARDIRNDSNYVV  272 (375)
T ss_pred             ccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCchhhEEEECCCcEEEecCccceeccCcccccc
Confidence                        12478888999999999999999999   999999999999999999999999999875432211   


Q ss_pred             --cccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCC
Q 044568          150 --IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVD  226 (257)
Q Consensus       150 --~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (257)
                        ...++..|+|||.+.+..++.++||||||+++|||++ |..||........   .......     ...     ...+
T Consensus       273 ~~~~~~~~~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~~~~~---~~~~~~~-----~~~-----~~~~  339 (375)
T cd05104         273 KGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMPVDSK---FYKMIKE-----GYR-----MLSP  339 (375)
T ss_pred             cCCCCCCcceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCchHH---HHHHHHh-----Ccc-----CCCC
Confidence              1223456999999998899999999999999999998 8888865422111   1111000     000     0112


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          227 KKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       227 ~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ...+.++.+++.+||+.||++|| +.|+++.|
T Consensus       340 ~~~~~~l~~li~~cl~~dP~~RPs~~eil~~l  371 (375)
T cd05104         340 ECAPSEMYDIMKSCWDADPLKRPTFKQIVQLI  371 (375)
T ss_pred             CCCCHHHHHHHHHHccCChhHCcCHHHHHHHH
Confidence            22346789999999999999999 99999865

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=100.00  E-value=4.2e-36  Score=248.61  Aligned_cols=227  Identities=14%  Similarity=0.214  Sum_probs=176.0

Q ss_pred             ccccceeeeccc-CCCCCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +.++.||+++.. ++..+++|...          +.+|++.+.         ++.|+|++++.+.+...+..++||||++
T Consensus         6 g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~---------~l~h~~i~~~~~~~~~~~~~~lv~e~~~   76 (252)
T cd05084           6 GNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILK---------QYSHPNIVRLIGVCTQKQPIYIVMELVQ   76 (252)
T ss_pred             ccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHH---------hCCCCCcceEEEEEcCCCCeEEEEeecc
Confidence            568899999975 55566777432          233333333         7889999999999999999999999999


Q ss_pred             CCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCccc--
Q 044568           73 NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVI--  150 (257)
Q Consensus        73 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~~--  150 (257)
                      +++|.+++.. ....+++.++..++.|++.||.|||++   +++|+|++|.||+++.++.++|+|||.+.........  
T Consensus        77 ~~~L~~~~~~-~~~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~  152 (252)
T cd05084          77 GGDFLTFLRT-EGPRLKVKELIQMVENAAAGMEYLESK---HCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYAST  152 (252)
T ss_pred             CCcHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHhC---CccccccchheEEEcCCCcEEECccccCccccccccccc
Confidence            9999999974 345689999999999999999999999   9999999999999999999999999998753322111  


Q ss_pred             ---ccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCC
Q 044568          151 ---DKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVD  226 (257)
Q Consensus       151 ---~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (257)
                         ...+..|+|||.+.+..++.++|+||||+++||+++ |..||.......    ...         ..... .....+
T Consensus       153 ~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~~~~----~~~---------~~~~~-~~~~~~  218 (252)
T cd05084         153 GGMKQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLSNQQ----TRE---------AIEQG-VRLPCP  218 (252)
T ss_pred             CCCCCCceeecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccCHHH----HHH---------HHHcC-CCCCCc
Confidence               122345999999988889999999999999999998 888886431110    000         00000 011233


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          227 KKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       227 ~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ...+..+.+++.+||+.+|++|| +.|+.++|
T Consensus       219 ~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l  250 (252)
T cd05084         219 ELCPDAVYRLMERCWEYDPGQRPSFSTVHQEL  250 (252)
T ss_pred             ccCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            44567899999999999999999 99999875

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=100.00  E-value=5.8e-36  Score=248.54  Aligned_cols=227  Identities=18%  Similarity=0.235  Sum_probs=177.9

Q ss_pred             ccccceeeecccCCCCCeeeccc--------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS--------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGS   75 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gs   75 (257)
                      +.++.||+++...+...++|...        +.+|++.+.         .+.|+|++++.+.+...+..++||||+++++
T Consensus        15 G~~~~v~~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~---------~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~   85 (256)
T cd05059          15 GQFGVVHLGKWRGKIDVAIKMIREGAMSEDDFIEEAKVMM---------KLSHPNLVQLYGVCTKQRPIFIVTEYMANGC   85 (256)
T ss_pred             CCCceEEEeEecCCccEEEEEeccCCCCHHHHHHHHHHHH---------hCCCCCEEEEEEEEcCCCceEEEEecCCCCC
Confidence            46789999998776677776533        234444444         7889999999999999999999999999999


Q ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-ccc---
Q 044568           76 LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-VID---  151 (257)
Q Consensus        76 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-~~~---  151 (257)
                      |.+++.. ....+++..+..++.|++.|+.|||++   +++|+|++|+||+++.++.+|++|||.++...... ...   
T Consensus        86 L~~~l~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~~~~~~~~  161 (256)
T cd05059          86 LLNYLRE-RKGKLGTEWLLDMCSDVCEAMEYLESN---GFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYTSSQGT  161 (256)
T ss_pred             HHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHHHC---CcccccccHhhEEECCCCcEEECCcccceecccccccccCCC
Confidence            9999975 345789999999999999999999999   99999999999999999999999999887533221 111   


Q ss_pred             cCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHH
Q 044568          152 KRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNL  230 (257)
Q Consensus       152 ~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (257)
                      ..+..|+|||.+.+..++.++|+||||+++||+++ |..||.......   ...          ....... ...+...+
T Consensus       162 ~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~---~~~----------~~~~~~~-~~~~~~~~  227 (256)
T cd05059         162 KFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFSNSE---VVE----------SVSAGYR-LYRPKLAP  227 (256)
T ss_pred             CCCccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCCCHHH---HHH----------HHHcCCc-CCCCCCCC
Confidence            22346999999998889999999999999999999 899996542111   000          0000001 12233456


Q ss_pred             HHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          231 ENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       231 ~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ..+.+++.+||+.+|++|| +.|+++.|
T Consensus       228 ~~~~~li~~cl~~~p~~Rpt~~~~l~~l  255 (256)
T cd05059         228 TEVYTIMYSCWHEKPEDRPAFKKLLSQL  255 (256)
T ss_pred             HHHHHHHHHHhcCChhhCcCHHHHHHHh
Confidence            7899999999999999999 99999875

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=100.00  E-value=7.8e-36  Score=246.55  Aligned_cols=235  Identities=18%  Similarity=0.232  Sum_probs=178.9

Q ss_pred             ccccceeeecccCCCCCeeeccch--hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHHHh
Q 044568            4 TKLSNFYRSSFNARNSPWISRVSW--TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIF   81 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~   81 (257)
                      +.++.||+++..++..+++|...-  ..+.+........ .+.++.|+|++++.+.+...+..++||||+++++|.+++.
T Consensus         6 g~~g~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~~~e~~-~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~   84 (250)
T cd05085           6 GNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEAR-ILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGDFLSFLR   84 (250)
T ss_pred             CCCceEEEEEecCCcEEEEEecCCcCCHHHHHHHHHHHH-HHHhCCCCCcCeEEEEEecCCccEEEEECCCCCcHHHHHH
Confidence            568999999988877788876432  1111110001111 3337889999999999999999999999999999999997


Q ss_pred             ccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcc----cccCCCCc
Q 044568           82 CSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFV----IDKRDKGY  157 (257)
Q Consensus        82 ~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~----~~~~~~~~  157 (257)
                      . ....+++..+..++.|++.||.|+|++   +++|+|++|+||+++.++.++|+|||++........    ...++..|
T Consensus        85 ~-~~~~~~~~~~~~~~~~i~~~l~~lH~~---~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y  160 (250)
T cd05085          85 K-KKDELKTKQLVKFALDAAAGMAYLESK---NCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSSSGLKQIPIKW  160 (250)
T ss_pred             h-cCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccChheEEEcCCCeEEECCCccceeccccccccCCCCCCcccc
Confidence            5 345689999999999999999999999   999999999999999999999999998864332221    12234569


Q ss_pred             cCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHH
Q 044568          158 MAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKV  236 (257)
Q Consensus       158 ~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  236 (257)
                      +|||++....++.++|+||||+++|++++ |..||.......   ...          ...... ....+...+..+.++
T Consensus       161 ~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~~~~---~~~----------~~~~~~-~~~~~~~~~~~~~~l  226 (250)
T cd05085         161 TAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGMTNQQ---ARE----------QVEKGY-RMSCPQKCPDDVYKV  226 (250)
T ss_pred             cCHHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCHHH---HHH----------HHHcCC-CCCCCCCCCHHHHHH
Confidence            99999988888999999999999999998 999996442111   000          000000 112233456789999


Q ss_pred             HHHcccCCCCCCC-hHHHHHhC
Q 044568          237 GLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       237 ~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      +.+||+.+|++|| +.|+++.|
T Consensus       227 i~~~l~~~p~~Rp~~~~l~~~l  248 (250)
T cd05085         227 MQRCWDYKPENRPKFSELQKEL  248 (250)
T ss_pred             HHHHcccCcccCCCHHHHHHHh
Confidence            9999999999999 99999875

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=4.6e-36  Score=270.43  Aligned_cols=226  Identities=16%  Similarity=0.114  Sum_probs=175.4

Q ss_pred             ccccceeeecccCC--CCCeeeccch---------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSFNAR--NSPWISRVSW---------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~~~--~~~~i~~~~~---------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +.++.||++.....  ..+++|....         .+|++.         +..+.|+||+++.+.+...+..+|||||++
T Consensus        78 G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~---------l~~l~Hpniv~~~~~~~~~~~~~lv~E~~~  148 (478)
T PTZ00267         78 NPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHC---------LAACDHFGIVKHFDDFKSDDKLLLIMEYGS  148 (478)
T ss_pred             CCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHH---------HHhCCCCCEeEEEEEEEECCEEEEEEECCC
Confidence            46788898875443  4455554322         223333         348899999999999999999999999999


Q ss_pred             CCCHHHHHhcc--CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---
Q 044568           73 NGSLTDIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---  147 (257)
Q Consensus        73 ~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---  147 (257)
                      +|+|.+++...  ....+++.++..++.|++.||.|||++   +|+||||||+||+++.++.+||+|||++......   
T Consensus       149 gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~---~ivHrDlkp~NIll~~~~~~kL~DFgla~~~~~~~~~  225 (478)
T PTZ00267        149 GGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSR---KMMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSVSL  225 (478)
T ss_pred             CCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC---CEEECCcCHHhEEECCCCcEEEEeCcCceecCCcccc
Confidence            99999988642  345688999999999999999999999   9999999999999999999999999998754332   


Q ss_pred             --cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCC
Q 044568          148 --FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKV  225 (257)
Q Consensus       148 --~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (257)
                        .....||+.|+|||.+.+..++.++|||||||++|||++|+.||......  . .....     ..    ..  ....
T Consensus       226 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~~~~--~-~~~~~-----~~----~~--~~~~  291 (478)
T PTZ00267        226 DVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKGPSQR--E-IMQQV-----LY----GK--YDPF  291 (478)
T ss_pred             ccccccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHH--H-HHHHH-----Hh----CC--CCCC
Confidence              23345888999999999888999999999999999999999999754211  0 00000     00    00  0122


Q ss_pred             CHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          226 DKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       226 ~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +......+.+++.+||+.||++|| ++++++
T Consensus       292 ~~~~s~~~~~li~~~L~~dP~~Rps~~~~l~  322 (478)
T PTZ00267        292 PCPVSSGMKALLDPLLSKNPALRPTTQQLLH  322 (478)
T ss_pred             CccCCHHHHHHHHHHhccChhhCcCHHHHHh
Confidence            333456789999999999999999 999864

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=100.00  E-value=4.2e-36  Score=258.56  Aligned_cols=232  Identities=17%  Similarity=0.155  Sum_probs=175.6

Q ss_pred             ccccceeeeccc-CCCCCeeeccchhh---hHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHH
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSWTA---DIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDI   79 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~   79 (257)
                      +.++.||+++.. ++..+++|...-..   .-+.......-..+..+.|+|++++...+...+..++||||+++|+|.++
T Consensus         6 G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g~L~~~   85 (328)
T cd05593           6 GTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGGELFFH   85 (328)
T ss_pred             CCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCCCCHHHH
Confidence            568899999865 45566677554210   00000100011133478899999999999999999999999999999999


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC---CcccccCCCC
Q 044568           80 IFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE---DFVIDKRDKG  156 (257)
Q Consensus        80 l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~---~~~~~~~~~~  156 (257)
                      +.  ....+++.++..++.|++.||.|||++   +++||||||+||+++.++.+||+|||+++....   ......+|+.
T Consensus        86 l~--~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~  160 (328)
T cd05593          86 LS--RERVFSEDRTRFYGAEIVSALDYLHSG---KIVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAATMKTFCGTPE  160 (328)
T ss_pred             HH--hcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEecccCHHHeEECCCCcEEEecCcCCccCCCcccccccccCCcC
Confidence            87  456799999999999999999999999   999999999999999999999999999864321   1233468889


Q ss_pred             ccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHH
Q 044568          157 YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKV  236 (257)
Q Consensus       157 ~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  236 (257)
                      |+|||.+.+..++.++|||||||++|||++|+.||.......   ....     .       ......++......+.++
T Consensus       161 y~aPE~~~~~~~~~~~DiwslGvil~elltG~~Pf~~~~~~~---~~~~-----~-------~~~~~~~p~~~~~~~~~l  225 (328)
T cd05593         161 YLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEK---LFEL-----I-------LMEDIKFPRTLSADAKSL  225 (328)
T ss_pred             ccChhhhcCCCCCccCCccccchHHHHHhhCCCCCCCCCHHH---HHHH-----h-------ccCCccCCCCCCHHHHHH
Confidence            999999998889999999999999999999999997542110   0000     0       001112334455778999


Q ss_pred             HHHcccCCCCCC-----C-hHHHHH
Q 044568          237 GLWCVQDEPALR-----P-MKCAVM  255 (257)
Q Consensus       237 ~~~cl~~~p~~R-----P-~~ei~~  255 (257)
                      +.+||+.||++|     | +.|+++
T Consensus       226 i~~~L~~dP~~R~~~~~~~~~~il~  250 (328)
T cd05593         226 LSGLLIKDPNKRLGGGPDDAKEIMR  250 (328)
T ss_pred             HHHHcCCCHHHcCCCCCCCHHHHhc
Confidence            999999999999     4 677654

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=100.00  E-value=6e-36  Score=248.75  Aligned_cols=235  Identities=22%  Similarity=0.255  Sum_probs=181.6

Q ss_pred             ccccceeeecccCCCCCeeeccchhhh--HHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHHHh
Q 044568            4 TKLSNFYRSSFNARNSPWISRVSWTAD--IEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIF   81 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~   81 (257)
                      +.++.||++....+..+++|...-...  .+.+.  ..-..+.++.|+|++++.+.+...+..++||||+++|+|.+++.
T Consensus        17 g~~~~vy~~~~~~~~~~~~k~~~~~~~~~~~~~~--~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~   94 (261)
T cd05148          17 GYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQ--KEVQALKRLRHKHLISLFAVCSVGEPVYIITELMEKGSLLAFLR   94 (261)
T ss_pred             CCCccEEEeEecCCCcEEEEeccccchhhHHHHH--HHHHHHhcCCCcchhheeeeEecCCCeEEEEeecccCCHHHHHh
Confidence            457899999988888888876542111  11111  11113348899999999999999999999999999999999998


Q ss_pred             ccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc---ccccCCCCcc
Q 044568           82 CSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF---VIDKRDKGYM  158 (257)
Q Consensus        82 ~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~---~~~~~~~~~~  158 (257)
                      ......+++.....++.|++.|+.|||++   +++|+|++|+||++++++.++++|||.+.......   ....++..|+
T Consensus        95 ~~~~~~~~~~~~~~~~~~i~~al~~lH~~---~i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~  171 (261)
T cd05148          95 SPEGQVLPVASLIDMACQVAEGMAYLEEQ---NSIHRDLAARNILVGEDLVCKVADFGLARLIKEDVYLSSDKKIPYKWT  171 (261)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccCcceEEEcCCceEEEccccchhhcCCccccccCCCCceEec
Confidence            65566789999999999999999999999   99999999999999999999999999887543322   1223345699


Q ss_pred             CcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHH
Q 044568          159 APECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVG  237 (257)
Q Consensus       159 aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  237 (257)
                      +||.+....++.++|+||||+++|++++ |+.||......   ......          .... ....+...++.+.+++
T Consensus       172 ~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~~~---~~~~~~----------~~~~-~~~~~~~~~~~~~~~i  237 (261)
T cd05148         172 APEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMNNH---EVYDQI----------TAGY-RMPCPAKCPQEIYKIM  237 (261)
T ss_pred             CHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcCCHH---HHHHHH----------HhCC-cCCCCCCCCHHHHHHH
Confidence            9999988889999999999999999998 89999654211   011100          0000 0122345567889999


Q ss_pred             HHcccCCCCCCC-hHHHHHhC
Q 044568          238 LWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       238 ~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      .+||+.||.+|| ++++++.|
T Consensus       238 ~~~l~~~p~~Rpt~~~l~~~L  258 (261)
T cd05148         238 LECWAAEPEDRPSFKALREEL  258 (261)
T ss_pred             HHHcCCCchhCcCHHHHHHHH
Confidence            999999999999 99998865

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=100.00  E-value=7e-36  Score=251.16  Aligned_cols=229  Identities=19%  Similarity=0.242  Sum_probs=176.3

Q ss_pred             ccccceeeecccC-CCCCeeeccch------------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||++.... +..+++|...-            ..|++         .+.++.|+|++++...+......++||||
T Consensus         4 G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~---------il~~l~hp~i~~~~~~~~~~~~~~lv~e~   74 (277)
T cd05607           4 GGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKE---------ILEKVNSPFIVNLAYAFESKTHLCLVMSL   74 (277)
T ss_pred             CCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHH---------HHHhcCCCcEEEEEEEEecCCeEEEEEec
Confidence            5789999998654 56666665531            11222         33388999999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC--c
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED--F  148 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~--~  148 (257)
                      +++|+|.+++.......+++..+..++.|++.|+.|||++   +++|+||+|+||+++.++.++|+|||++......  .
T Consensus        75 ~~g~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~~~~  151 (277)
T cd05607          75 MNGGDLKYHIYNVGERGLEMERVIHYSAQITCGILHLHSM---DIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGKTI  151 (277)
T ss_pred             CCCCCHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHC---CEEEccCChHhEEEcCCCCEEEeeceeeeecCCCcee
Confidence            9999999998764556789999999999999999999999   9999999999999999999999999988754332  2


Q ss_pred             ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHH
Q 044568          149 VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKK  228 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (257)
                      ....++..|+|||++.+..++.++|+||+||++|||++|+.||............   ..     ........  .....
T Consensus       152 ~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~~~~~~~~~~---~~-----~~~~~~~~--~~~~~  221 (277)
T cd05607         152 TQRAGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKEKVAKEEL---KR-----RTLEDEVK--FEHQN  221 (277)
T ss_pred             eccCCCCCccCHHHHccCCCCCchhHHHHHHHHHHHHhCCCCCCCCcchhhHHHH---HH-----Hhhccccc--ccccc
Confidence            3446788999999999888999999999999999999999999754222111111   00     00000000  01122


Q ss_pred             HHHHHHHHHHHcccCCCCCCC-hHHHH
Q 044568          229 NLENLVKVGLWCVQDEPALRP-MKCAV  254 (257)
Q Consensus       229 ~~~~l~~l~~~cl~~~p~~RP-~~ei~  254 (257)
                      ....+.+++..||+.||++|| ++|++
T Consensus       222 ~~~~~~~li~~~L~~~P~~R~~~~~~~  248 (277)
T cd05607         222 FTEESKDICRLFLAKKPEDRLGSREKN  248 (277)
T ss_pred             CCHHHHHHHHHHhccCHhhCCCCccch
Confidence            456789999999999999999 96654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=100.00  E-value=9e-36  Score=250.89  Aligned_cols=228  Identities=17%  Similarity=0.235  Sum_probs=174.7

Q ss_pred             ccccceeeeccc-----CCCCCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEE
Q 044568            4 TKLSNFYRSSFN-----ARNSPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIE   68 (257)
Q Consensus         4 ~~~~~~y~~~~~-----~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~   68 (257)
                      +.++.||+|+..     .+..+++|...          +.+|++.+.         ++.|+|++++.+.+...+..++||
T Consensus        16 g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~---------~l~h~niv~~~~~~~~~~~~~lv~   86 (283)
T cd05090          16 CAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMA---------ELHHPNIVCLLGVVTQEQPVCMLF   86 (283)
T ss_pred             cCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHh---------hCCCCCeeeEEEEEecCCceEEEE
Confidence            568899999853     33455666553          233443433         889999999999999999999999


Q ss_pred             eecCCCCHHHHHhccC---------------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCce
Q 044568           69 RPVRNGSLTDIIFCSA---------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA  133 (257)
Q Consensus        69 E~~~~gsL~~~l~~~~---------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~  133 (257)
                      ||+++|+|.+++....               ...+++.+...++.|++.||.|||++   +++|+|++|+||+++.++.+
T Consensus        87 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~i~H~dlkp~nili~~~~~~  163 (283)
T cd05090          87 EYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSH---FFVHKDLAARNILIGEQLHV  163 (283)
T ss_pred             EcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhc---CeehhccccceEEEcCCCcE
Confidence            9999999999985211               23578889999999999999999999   99999999999999999999


Q ss_pred             EEeeecccccCCCC-----cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHH
Q 044568          134 KILDFGLAKLPNED-----FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWV  207 (257)
Q Consensus       134 kl~dfg~~~~~~~~-----~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~  207 (257)
                      +|+|||++......     .....++..|+|||.+.+..++.++|+||||+++|||++ |..||......    ......
T Consensus       164 kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~~~~----~~~~~~  239 (283)
T cd05090         164 KISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFSNQ----EVIEMV  239 (283)
T ss_pred             EeccccccccccCCcceecccCCCccceecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHH----HHHHHH
Confidence            99999998643221     122234556999999988889999999999999999998 98998654211    000000


Q ss_pred             HHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          208 YKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                          ....      ....+...+..+.+++.+||+.||++|| +.+|.+.|
T Consensus       240 ----~~~~------~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l  280 (283)
T cd05090         240 ----RKRQ------LLPCSEDCPPRMYSLMTECWQEGPSRRPRFKDIHTRL  280 (283)
T ss_pred             ----HcCC------cCCCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHHh
Confidence                0000      0122334557789999999999999999 99998865

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=100.00  E-value=2.1e-36  Score=261.14  Aligned_cols=229  Identities=14%  Similarity=0.120  Sum_probs=184.2

Q ss_pred             ccccceeeecccCCCCC-eeeccc---hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHH
Q 044568            4 TKLSNFYRSSFNARNSP-WISRVS---WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDI   79 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~-~i~~~~---~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~   79 (257)
                      +-|+.||.++..+++.+ |+|.+.   ..+--++-+|......+....++++|++.-.+++.+..||||||++||++..+
T Consensus       152 GAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~LYLiMEylPGGD~mTL  231 (550)
T KOG0605|consen  152 GAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEYLYLIMEYLPGGDMMTL  231 (550)
T ss_pred             ccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCeeEEEEEecCCccHHHH
Confidence            34778888886655554 555433   33333344444444456678899999999999999999999999999999999


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC-------------
Q 044568           80 IFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE-------------  146 (257)
Q Consensus        80 l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~-------------  146 (257)
                      |.  ....|++..++.++.+.+.|++-+|+.   |++||||||+|+|+|..|++||+|||++.-...             
T Consensus       232 L~--~~~~L~e~~arfYiaE~vlAI~~iH~~---gyIHRDIKPdNlLiD~~GHiKLSDFGLs~gl~~~~~~~~~~~~~~~  306 (550)
T KOG0605|consen  232 LM--RKDTLTEDWARFYIAETVLAIESIHQL---GYIHRDIKPDNLLIDAKGHIKLSDFGLSTGLDKKHRIESYRLDEQM  306 (550)
T ss_pred             HH--hcCcCchHHHHHHHHHHHHHHHHHHHc---CcccccCChhheeecCCCCEeeccccccchhhhhhhhhhhcchhhh
Confidence            98  678899999999999999999999999   999999999999999999999999999742110             


Q ss_pred             ------------C-----c--------------------ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCC
Q 044568          147 ------------D-----F--------------------VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRK  189 (257)
Q Consensus       147 ------------~-----~--------------------~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~  189 (257)
                                  .     .                    .+..|||-|+|||++.+..|+...|+||+||++|||+.|-+
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kgY~~~cDwWSLG~ImyEmLvGyP  386 (550)
T KOG0605|consen  307 QINLSEAKPSDFPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKGYGKECDWWSLGCIMYEMLVGYP  386 (550)
T ss_pred             hhhhccCCCccccccccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHhcCCCCccccHHHHHHHHHHHHhCCC
Confidence                        0     0                    24478889999999999999999999999999999999999


Q ss_pred             CCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC
Q 044568          190 NMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP  249 (257)
Q Consensus       190 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP  249 (257)
                      ||.++.+......+.+|......+.+.           ....+.++||.+|+. ||++|-
T Consensus       387 PF~s~tp~~T~rkI~nwr~~l~fP~~~-----------~~s~eA~DLI~rll~-d~~~RL  434 (550)
T KOG0605|consen  387 PFCSETPQETYRKIVNWRETLKFPEEV-----------DLSDEAKDLITRLLC-DPENRL  434 (550)
T ss_pred             CCCCCCHHHHHHHHHHHhhhccCCCcC-----------cccHHHHHHHHHHhc-CHHHhc
Confidence            999887776666677775433322221           122678899999999 999997

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=100.00  E-value=1.1e-35  Score=247.30  Aligned_cols=226  Identities=17%  Similarity=0.233  Sum_probs=172.6

Q ss_pred             ccccceeeeccc---CCCCCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFN---ARNSPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~---~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||+|.+.   .+..+++|...          +.+|++++.         ++.|+|++++.+.+. .+..++||||
T Consensus         6 G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~ii~~~~~~~-~~~~~lv~e~   75 (257)
T cd05115           6 GNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMH---------QLDNPYIVRMIGVCE-AEALMLVMEM   75 (257)
T ss_pred             CCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHH---------hcCCCCeEEEEEEEc-CCCeEEEEEe
Confidence            568899998764   22345666443          223344444         789999999998765 4578999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc--
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF--  148 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~--  148 (257)
                      +++|+|.+++.. ....+++.++..++.|++.|+.|||++   +++|+||+|+||+++.++.++|+|||++.......  
T Consensus        76 ~~~~~L~~~l~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~  151 (257)
T cd05115          76 ASGGPLNKFLSG-KKDEITVSNVVELMHQVSMGMKYLEGK---NFVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSY  151 (257)
T ss_pred             CCCCCHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHhc---CeeecccchheEEEcCCCcEEeccCCccccccCCccc
Confidence            999999999975 456789999999999999999999999   99999999999999999999999999987433221  


Q ss_pred             ----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC
Q 044568          149 ----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  223 (257)
Q Consensus       149 ----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (257)
                          ....++..|+|||.+....++.++|+||||+++||+++ |..||.......    .....         ... ...
T Consensus       152 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~----~~~~~---------~~~-~~~  217 (257)
T cd05115         152 YKARSAGKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMKGPE----VMSFI---------EQG-KRL  217 (257)
T ss_pred             eeccCCCCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcCCHHH----HHHHH---------HCC-CCC
Confidence                11122457999999988888999999999999999996 999997542111    00000         000 011


Q ss_pred             CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          224 KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       224 ~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ..+...++.+.+++.+||+.+|++|| +.+|.+.|
T Consensus       218 ~~~~~~~~~l~~li~~c~~~~~~~Rp~~~~i~~~l  252 (257)
T cd05115         218 DCPAECPPEMYALMKDCWIYKWEDRPNFAKVEERM  252 (257)
T ss_pred             CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            23445567899999999999999999 99998764

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=100.00  E-value=9.5e-36  Score=247.15  Aligned_cols=227  Identities=21%  Similarity=0.230  Sum_probs=176.6

Q ss_pred             ccccceeeecccCCCCCeeeccc-------hhhhHHHHhHhhhccccccccCCceeeeceeee-ecCceeEEEeecCCCC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS-------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAK-LTSVSGKIERPVRNGS   75 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~-------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~-~~~~~~lV~E~~~~gs   75 (257)
                      +.++.||+++.. +..+++|...       +.+|++.+.         ++.|++++++.+.+. ..+..++||||+++++
T Consensus        17 g~~~~v~~~~~~-~~~~~~k~~~~~~~~~~~~~e~~~l~---------~l~~~~i~~~~~~~~~~~~~~~lv~e~~~~~~   86 (256)
T cd05082          17 GEFGDVMLGDYR-GNKVAVKCIKNDATAQAFLAEASVMT---------QLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGS   86 (256)
T ss_pred             cCCCeEEEEEEc-CCcEEEEEeCCCchHHHHHHHHHHHH---------hCCCCCeeeEEEEEEcCCCceEEEEECCCCCc
Confidence            467899999765 5666776544       234444444         888999999998754 4567899999999999


Q ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcccccCCC
Q 044568           76 LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK  155 (257)
Q Consensus        76 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~  155 (257)
                      |.+++.......+++..+..++.|++.||.|||++   +++|+||+|+||++++++.+|++|||++............+.
T Consensus        87 L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~  163 (256)
T cd05082          87 LVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEAN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPV  163 (256)
T ss_pred             HHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CEeccccchheEEEcCCCcEEecCCccceeccccCCCCccce
Confidence            99999864455689999999999999999999999   999999999999999999999999999875444333334456


Q ss_pred             CccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHH
Q 044568          156 GYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLV  234 (257)
Q Consensus       156 ~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  234 (257)
                      .|+|||++.+..++.++|+||||+++|||++ |+.||......    .....         .... .....+...+..+.
T Consensus       164 ~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~~~~----~~~~~---------~~~~-~~~~~~~~~~~~~~  229 (256)
T cd05082         164 KWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK----DVVPR---------VEKG-YKMDAPDGCPPVVY  229 (256)
T ss_pred             eecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCCCCCHH----HHHHH---------HhcC-CCCCCCCCCCHHHH
Confidence            7999999988889999999999999999998 99998643110    00000         0000 01122344567899


Q ss_pred             HHHHHcccCCCCCCC-hHHHHHhC
Q 044568          235 KVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       235 ~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      +++.+||+.+|++|| +.++++.|
T Consensus       230 ~li~~~l~~~p~~Rpt~~~l~~~l  253 (256)
T cd05082         230 DVMKQCWHLDAATRPSFLQLREQL  253 (256)
T ss_pred             HHHHHHhcCChhhCcCHHHHHHHH
Confidence            999999999999999 99998865

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=8.9e-36  Score=250.20  Aligned_cols=195  Identities=19%  Similarity=0.235  Sum_probs=153.7

Q ss_pred             ccccccCCceeeeceeeeecCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCC
Q 044568           42 KCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIK  121 (257)
Q Consensus        42 ~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~  121 (257)
                      .+..+.|+|++++.+.+...+..++||||+++|+|.+++.. ....+++..+..++.|++.||.|||++   +++||||+
T Consensus        69 ~~~~l~h~niv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~---~iiH~dlk  144 (274)
T cd05076          69 LMSQVSHIHLAFVHGVCVRGSENIMVEEFVEHGPLDVCLRK-EKGRVPVAWKITVAQQLASALSYLEDK---NLVHGNVC  144 (274)
T ss_pred             HHhcCCCCCeeeEEEEEEeCCceEEEEecCCCCcHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHcC---CccCCCCC
Confidence            34478899999999999999999999999999999999975 456789999999999999999999999   99999999


Q ss_pred             CCceeeCCCC-------ceEEeeecccccCCCCcccccCCCCccCcccccC-CCCCccccchhHHHHHHHHH-hcCCCCC
Q 044568          122 PQNILMDEFW-------TAKILDFGLAKLPNEDFVIDKRDKGYMAPECYKR-TPISVKADVYGYGIVLLETI-CCRKNME  192 (257)
Q Consensus       122 ~~nil~~~~~-------~~kl~dfg~~~~~~~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~-~g~~pf~  192 (257)
                      |+||+++..+       .++++|||.+..... .....++..|+|||.+.+ ..++.++|+||||+++||++ +|..||.
T Consensus       145 p~Nill~~~~~~~~~~~~~kl~d~g~~~~~~~-~~~~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~  223 (274)
T cd05076         145 AKNILLARLGLAEGTSPFIKLSDPGVSFTALS-REERVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEICFDGEVPLK  223 (274)
T ss_pred             cccEEEeccCcccCccceeeecCCcccccccc-ccccccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCcc
Confidence            9999997543       479999998753322 223456778999998875 45789999999999999995 6899987


Q ss_pred             cCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          193 IDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      .......    .....         .   ....+......+.+++.+||+.+|++|| +.++++.|
T Consensus       224 ~~~~~~~----~~~~~---------~---~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~il~~L  273 (274)
T cd05076         224 ERTPSEK----ERFYE---------K---KHRLPEPSCKELATLISQCLTYEPTQRPSFRTILRDL  273 (274)
T ss_pred             ccChHHH----HHHHH---------h---ccCCCCCCChHHHHHHHHHcccChhhCcCHHHHHHhh
Confidence            5422111    01000         0   0011112235688999999999999999 99999875

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=100.00  E-value=5e-36  Score=257.50  Aligned_cols=226  Identities=16%  Similarity=0.144  Sum_probs=172.9

Q ss_pred             ccccceeeeccc-CCCCCeeeccchhhh---HHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHH
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSWTAD---IEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDI   79 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~   79 (257)
                      +.++.||+++.. ++..+++|.......   -+.......-..+.++.|+|++++.+.+...+..++||||+++|+|.++
T Consensus         6 G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~   85 (323)
T cd05595           6 GTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFH   85 (323)
T ss_pred             CCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCCCcHHHH
Confidence            578999999865 456667776542110   0010100111133488999999999999999999999999999999999


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC---CcccccCCCC
Q 044568           80 IFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE---DFVIDKRDKG  156 (257)
Q Consensus        80 l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~---~~~~~~~~~~  156 (257)
                      +.  ....+++..+..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++.....   ......+++.
T Consensus        86 l~--~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~  160 (323)
T cd05595          86 LS--RERVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPE  160 (323)
T ss_pred             HH--HcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHEEEcCCCCEEecccHHhccccCCCCccccccCCcC
Confidence            87  445789999999999999999999999   999999999999999999999999998764221   1233468889


Q ss_pred             ccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHH
Q 044568          157 YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKV  236 (257)
Q Consensus       157 ~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  236 (257)
                      |+|||.+.+..++.++|+|||||++|||++|+.||.......   .....            .......+....+.+.++
T Consensus       161 y~aPE~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~---~~~~~------------~~~~~~~p~~~~~~~~~l  225 (323)
T cd05595         161 YLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHER---LFELI------------LMEEIRFPRTLSPEAKSL  225 (323)
T ss_pred             cCCcccccCCCCCchhchhhhHHHHHHHHhCCCCCCCCCHHH---HHHHH------------hcCCCCCCCCCCHHHHHH
Confidence            999999998889999999999999999999999997542111   00000            001112334456778999


Q ss_pred             HHHcccCCCCCCC
Q 044568          237 GLWCVQDEPALRP  249 (257)
Q Consensus       237 ~~~cl~~~p~~RP  249 (257)
                      +.+||+.||.+||
T Consensus       226 i~~~L~~dP~~R~  238 (323)
T cd05595         226 LAGLLKKDPKQRL  238 (323)
T ss_pred             HHHHccCCHHHhC
Confidence            9999999999995

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=4.1e-37  Score=249.37  Aligned_cols=243  Identities=14%  Similarity=0.095  Sum_probs=181.9

Q ss_pred             cccceeeecccCCC-CCeeeccch---hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHHH
Q 044568            5 KLSNFYRSSFNARN-SPWISRVSW---TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDII   80 (257)
Q Consensus         5 ~~~~~y~~~~~~~~-~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l   80 (257)
                      .-++|||-+..+++ .++||+.--   ...++.+...... -+..++|+|+|++...++......||+|||++ ++.+-|
T Consensus        14 SYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIr-mLKqLkH~NLVnLiEVFrrkrklhLVFE~~dh-TvL~eL   91 (396)
T KOG0593|consen   14 SYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIR-MLKQLKHENLVNLIEVFRRKRKLHLVFEYCDH-TVLHEL   91 (396)
T ss_pred             cceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHH-HHHhcccchHHHHHHHHHhcceeEEEeeecch-HHHHHH
Confidence            45789998865554 456776432   2344444444444 44499999999999999999999999999987 566666


Q ss_pred             hccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc---ccccCCCCc
Q 044568           81 FCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF---VIDKRDKGY  157 (257)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~---~~~~~~~~~  157 (257)
                      .. .+.+++.....+++.|++.|+.|+|++   +++||||||+|||++.++.+||+|||+++....+.   +...-|.-|
T Consensus        92 e~-~p~G~~~~~vk~~l~Q~l~ai~~cHk~---n~IHRDIKPENILit~~gvvKLCDFGFAR~L~~pgd~YTDYVATRWY  167 (396)
T KOG0593|consen   92 ER-YPNGVPSELVKKYLYQLLKAIHFCHKN---NCIHRDIKPENILITQNGVVKLCDFGFARTLSAPGDNYTDYVATRWY  167 (396)
T ss_pred             Hh-ccCCCCHHHHHHHHHHHHHHhhhhhhc---CeecccCChhheEEecCCcEEeccchhhHhhcCCcchhhhhhhhhhc
Confidence            55 678899999999999999999999999   99999999999999999999999999999765433   444566779


Q ss_pred             cCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC-------------
Q 044568          158 MAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT-------------  223 (257)
Q Consensus       158 ~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  223 (257)
                      .|||.+.+ .+|+...||||+||++.||++|.+.|.+.+.-+....+....-  ...+.-+.++...             
T Consensus       168 RaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~SDiDQLy~I~ktLG--~L~prhq~iF~~N~~F~Gv~lP~~~~  245 (396)
T KOG0593|consen  168 RAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGRSDIDQLYLIRKTLG--NLIPRHQSIFSSNPFFHGVRLPEPEH  245 (396)
T ss_pred             cChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCCCcchHHHHHHHHHHHc--ccCHHHHHHhccCCceeeeecCCCCC
Confidence            99999998 5799999999999999999999999987743332211111110  0111111111110             


Q ss_pred             --CC---CHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          224 --KV---DKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       224 --~~---~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                        +.   .......+.+++..|++.||.+|+ .+|++.
T Consensus       246 ~epLe~k~p~~s~~~ld~~k~cL~~dP~~R~sc~qll~  283 (396)
T KOG0593|consen  246 PEPLERKYPKISNVLLDLLKKCLKMDPDDRLSCEQLLH  283 (396)
T ss_pred             ccchhhhcccchHHHHHHHHHHhcCCccccccHHHHhc
Confidence              00   111235789999999999999999 998863

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=1.5e-35  Score=247.17  Aligned_cols=234  Identities=15%  Similarity=0.177  Sum_probs=169.9

Q ss_pred             cccccceeeecccCCC-------------CCeeeccchhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEe
Q 044568            3 CTKLSNFYRSSFNARN-------------SPWISRVSWTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIER   69 (257)
Q Consensus         3 ~~~~~~~y~~~~~~~~-------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E   69 (257)
                      .+.++.||+|+...+.             .+++|...-...-........-..+..+.|+|++++.+.+......++|||
T Consensus         5 ~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   84 (262)
T cd05077           5 RGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLYGVCVRDVENIMVEE   84 (262)
T ss_pred             cCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCEEEEe
Confidence            4678999999865433             245554321111000000111113347889999999999999999999999


Q ss_pred             ecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCc-------eEEeeecccc
Q 044568           70 PVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT-------AKILDFGLAK  142 (257)
Q Consensus        70 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~-------~kl~dfg~~~  142 (257)
                      |+++|+|..++.. ....+++..+..++.|++.|+.|||++   +++||||+|+||+++.++.       ++++|||.+.
T Consensus        85 ~~~~~~l~~~~~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~g~~~  160 (262)
T cd05077          85 FVEFGPLDLFMHR-KSDVLTTPWKFKVAKQLASALSYLEDK---DLVHGNVCTKNILLAREGIDGECGPFIKLSDPGIPI  160 (262)
T ss_pred             cccCCCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHhhhC---CeECCCCCcccEEEecCCccCCCCceeEeCCCCCCc
Confidence            9999999999874 445689999999999999999999999   9999999999999986553       8999999876


Q ss_pred             cCCCCcccccCCCCccCccccc-CCCCCccccchhHHHHHHHHH-hcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhh
Q 044568          143 LPNEDFVIDKRDKGYMAPECYK-RTPISVKADVYGYGIVLLETI-CCRKNMEIDASKPEEIILTNWVYKCFINRELNKLV  220 (257)
Q Consensus       143 ~~~~~~~~~~~~~~~~aPE~~~-~~~~~~~~Di~s~G~~l~el~-~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (257)
                      .... .....++..|+|||.+. ...++.++||||||+++|||+ +|..||........    ..     ......    
T Consensus       161 ~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~----~~-----~~~~~~----  226 (262)
T cd05077         161 TVLS-RQECVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIPLKDKTLAEK----ER-----FYEGQC----  226 (262)
T ss_pred             cccC-cccccccccccChhhhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCcchhHH----HH-----HHhcCc----
Confidence            4322 23345677899999887 456889999999999999998 48888764311110    00     000000    


Q ss_pred             cCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          221 RGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       221 ~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                         .........+.+++.+||+.||++|| +.+|++.|
T Consensus       227 ---~~~~~~~~~~~~li~~cl~~dp~~Rp~~~~il~~~  261 (262)
T cd05077         227 ---MLVTPSCKELADLMTHCMNYDPNQRPFFRAIMRDI  261 (262)
T ss_pred             ---cCCCCChHHHHHHHHHHcCCChhhCcCHHHHHHhc
Confidence               11112345688999999999999999 99999864

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=100.00  E-value=1.2e-35  Score=249.85  Aligned_cols=235  Identities=15%  Similarity=0.152  Sum_probs=171.7

Q ss_pred             ccccceeeecccCCCC-----CeeeccchhhhHHH-HhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHH
Q 044568            4 TKLSNFYRSSFNARNS-----PWISRVSWTADIEV-LSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLT   77 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~-----~~i~~~~~~~~~~~-~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~   77 (257)
                      +.++.||++.....+.     +++|.......-+. ......-..+.++.|+|++++.+.+. ....++++||+++|+|.
T Consensus        18 G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~-~~~~~~i~e~~~~gsL~   96 (279)
T cd05111          18 GVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICP-GASLQLVTQLSPLGSLL   96 (279)
T ss_pred             cCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEEC-CCccEEEEEeCCCCcHH
Confidence            5688999999765544     44555432111000 00000000223788999999999875 45577899999999999


Q ss_pred             HHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-----cccc
Q 044568           78 DIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-----VIDK  152 (257)
Q Consensus        78 ~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-----~~~~  152 (257)
                      +++.. ....+++..+..++.|++.||.|||++   +++|+||+|+||+++.++.+||+|||.++......     ....
T Consensus        97 ~~l~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~---~iiH~dlkp~nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~  172 (279)
T cd05111          97 DHVRQ-HRDSLDPQRLLNWCVQIAKGMYYLEEH---RMVHRNLAARNILLKSDSIVQIADFGVADLLYPDDKKYFYSEHK  172 (279)
T ss_pred             HHHHh-cccCCCHHHHHHHHHHHHHHHHHHHHC---CEeccccCcceEEEcCCCcEEEcCCccceeccCCCcccccCCCC
Confidence            99975 456789999999999999999999999   99999999999999999999999999987532211     2223


Q ss_pred             CCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHH
Q 044568          153 RDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLE  231 (257)
Q Consensus       153 ~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (257)
                      ++..|++||.+.+..++.++|+||||+++||+++ |..||.......    ...+..    ..      .....+..+..
T Consensus       173 ~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~----~~~~~~----~~------~~~~~~~~~~~  238 (279)
T cd05111         173 TPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMRPHE----VPDLLE----KG------ERLAQPQICTI  238 (279)
T ss_pred             CcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCCCHHH----HHHHHH----CC------CcCCCCCCCCH
Confidence            4567999999988889999999999999999998 999997542111    111100    00      00011223446


Q ss_pred             HHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          232 NLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       232 ~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      .+..++.+||+.+|.+|| +.|+++.|
T Consensus       239 ~~~~li~~c~~~~p~~Rps~~el~~~l  265 (279)
T cd05111         239 DVYMVMVKCWMIDENVRPTFKELANEF  265 (279)
T ss_pred             HHHHHHHHHcCCCcccCcCHHHHHHHH
Confidence            788899999999999999 99998754

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-36  Score=268.26  Aligned_cols=224  Identities=18%  Similarity=0.196  Sum_probs=180.6

Q ss_pred             ccccceeeecccCCCCC-eeeccc---h--hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHH
Q 044568            4 TKLSNFYRSSFNARNSP-WISRVS---W--TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLT   77 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~-~i~~~~---~--~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~   77 (257)
                      +.|+.|+.+++..+++. +||.+.   .  ..+++.......-..+.. +||.++++...++..++.++||||+.||++.
T Consensus       379 GsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~-~HPFL~~L~~~fQT~~~l~fvmey~~Ggdm~  457 (694)
T KOG0694|consen  379 GSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELAN-RHPFLVNLFSCFQTKEHLFFVMEYVAGGDLM  457 (694)
T ss_pred             CcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhc-cCCeEeecccccccCCeEEEEEEecCCCcEE
Confidence            46888999987766654 555433   1  233443332222212223 7999999999999999999999999999955


Q ss_pred             HHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeeccccc---CCCCcccccCC
Q 044568           78 DIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKL---PNEDFVIDKRD  154 (257)
Q Consensus        78 ~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~---~~~~~~~~~~~  154 (257)
                      .++   ....+++..++.|+..++.||+|||++   +|++||||.+|||+|..|++||+|||+++.   .+......+||
T Consensus       458 ~~~---~~~~F~e~rarfyaAev~l~L~fLH~~---~IIYRDlKLdNiLLD~eGh~kiADFGlcKe~m~~g~~TsTfCGT  531 (694)
T KOG0694|consen  458 HHI---HTDVFSEPRARFYAAEVVLGLQFLHEN---GIIYRDLKLDNLLLDTEGHVKIADFGLCKEGMGQGDRTSTFCGT  531 (694)
T ss_pred             EEE---ecccccHHHHHHHHHHHHHHHHHHHhc---CceeeecchhheEEcccCcEEecccccccccCCCCCccccccCC
Confidence            544   567899999999999999999999999   999999999999999999999999999985   34555778999


Q ss_pred             CCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhh-hcCCCCCHHHHHHH
Q 044568          155 KGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKL-VRGTKVDKKNLENL  233 (257)
Q Consensus       155 ~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l  233 (257)
                      +.|+|||++.+..|+..+|+|||||++|||+.|..||.++++++-                ...+ .+...+|.....+.
T Consensus       532 pey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gddEee~----------------FdsI~~d~~~yP~~ls~ea  595 (694)
T KOG0694|consen  532 PEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFPGDDEEEV----------------FDSIVNDEVRYPRFLSKEA  595 (694)
T ss_pred             hhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCCCCCHHHH----------------HHHHhcCCCCCCCcccHHH
Confidence            999999999999999999999999999999999999987733221                1111 22235677777889


Q ss_pred             HHHHHHcccCCCCCCC-h
Q 044568          234 VKVGLWCVQDEPALRP-M  250 (257)
Q Consensus       234 ~~l~~~cl~~~p~~RP-~  250 (257)
                      +.++.+++..+|++|. +
T Consensus       596 ~~il~~ll~k~p~kRLG~  613 (694)
T KOG0694|consen  596 IAIMRRLLRKNPEKRLGS  613 (694)
T ss_pred             HHHHHHHhccCcccccCC
Confidence            9999999999999998 7

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=100.00  E-value=1.4e-35  Score=246.45  Aligned_cols=227  Identities=17%  Similarity=0.227  Sum_probs=177.0

Q ss_pred             ccccceeeecccCCCCCeeeccch--------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVSW--------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGS   75 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~~--------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gs   75 (257)
                      +.++.||.++...+..+++|....        .+|++.+.         ++.|+|++++.+.+...+..++||||+++|+
T Consensus        15 G~~~~vy~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~---------~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   85 (256)
T cd05113          15 GQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMM---------KLSHEKLVQLYGVCTKQRPIYIVTEYMSNGC   85 (256)
T ss_pred             cccceEEEEEecCCCcEEEEEcCCCcccHHHHHHHHHHHh---------cCCCCCeeeEEEEEccCCCcEEEEEcCCCCc
Confidence            457899999887777788875542        33434333         8899999999999998899999999999999


Q ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-c---cc
Q 044568           76 LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-V---ID  151 (257)
Q Consensus        76 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-~---~~  151 (257)
                      |.+++.. ....+++.++..++.|++.|+.|||++   +++|+||+|.||+++.++.+|++|||.++...... .   ..
T Consensus        86 l~~~i~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~  161 (256)
T cd05113          86 LLNYLRE-HGKRFQPSQLLEMCKDVCEGMAYLESK---QFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYTSSVGS  161 (256)
T ss_pred             HHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccccCcceEEEcCCCCEEECCCccceecCCCceeecCCC
Confidence            9999975 344789999999999999999999999   99999999999999999999999999877433221 1   12


Q ss_pred             cCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHH
Q 044568          152 KRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNL  230 (257)
Q Consensus       152 ~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (257)
                      .++..|++||.+.+..++.++|+||||+++|||++ |..||.......   ....          ...... ...+....
T Consensus       162 ~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~---~~~~----------~~~~~~-~~~~~~~~  227 (256)
T cd05113         162 KFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFNNSE---TVEK----------VSQGLR-LYRPHLAS  227 (256)
T ss_pred             ccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCcCCHHH---HHHH----------HhcCCC-CCCCCCCC
Confidence            23456999999988889999999999999999998 999986442111   0000          000000 01122235


Q ss_pred             HHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          231 ENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       231 ~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ..+.+++.+||+.+|.+|| +.++++.|
T Consensus       228 ~~~~~li~~cl~~~p~~Rp~~~~ll~~~  255 (256)
T cd05113         228 EKVYAIMYSCWHEKAEERPTFQQLLSSI  255 (256)
T ss_pred             HHHHHHHHHHcCCCcccCCCHHHHHHhh
Confidence            7889999999999999999 99998764

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=100.00  E-value=6.6e-36  Score=252.46  Aligned_cols=241  Identities=17%  Similarity=0.140  Sum_probs=174.5

Q ss_pred             ccccceeeecccC--CCCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeee-----ecCcee
Q 044568            4 TKLSNFYRSSFNA--RNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAK-----LTSVSG   65 (257)
Q Consensus         4 ~~~~~~y~~~~~~--~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~-----~~~~~~   65 (257)
                      +.++.||+++...  +..+++|....           .+|++.+.      .+..+.|+|++++.+.+.     .....+
T Consensus        12 G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~------~l~~~~hpniv~~~~~~~~~~~~~~~~~~   85 (290)
T cd07862          12 GAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLR------HLETFEHPNVVRLFDVCTVSRTDRETKLT   85 (290)
T ss_pred             CCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHH------hhcccCCCCcceEEEEEecccCCCCCcEE
Confidence            5689999998643  34567775432           22333332      233567999999998875     245688


Q ss_pred             EEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC
Q 044568           66 KIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN  145 (257)
Q Consensus        66 lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~  145 (257)
                      +||||++ ++|.+++.......+++.++..++.|++.||.|||++   +++||||||+||+++.++.++|+|||++....
T Consensus        86 lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~---~iiH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  161 (290)
T cd07862          86 LVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLADFGLARIYS  161 (290)
T ss_pred             EEEccCC-CCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEEcCCCCEEEccccceEecc
Confidence            9999996 6999999764556789999999999999999999999   99999999999999999999999999987543


Q ss_pred             CC--cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhh------
Q 044568          146 ED--FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELN------  217 (257)
Q Consensus       146 ~~--~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~------  217 (257)
                      ..  .....++..|+|||.+.+..++.++||||||+++|||++|..||...........+....... ......      
T Consensus       162 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~  240 (290)
T cd07862         162 FQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLP-GEEDWPRDVALP  240 (290)
T ss_pred             CCcccccccccccccChHHHhCCCCCCccchHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCC-Chhhchhhhccc
Confidence            22  234467888999999988889999999999999999999999998653222111111100000 000000      


Q ss_pred             -hhhcCC------CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          218 -KLVRGT------KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       218 -~~~~~~------~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                       ......      ....+..+.+.+++.+||+.||++|| +.|+++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~  286 (290)
T cd07862         241 RQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS  286 (290)
T ss_pred             chhccCCCCCCHHHHccCCCHHHHHHHHHHhccCchhcCCHHHHhc
Confidence             000000      01112346778999999999999999 999985

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=100.00  E-value=4e-37  Score=255.18  Aligned_cols=240  Identities=18%  Similarity=0.190  Sum_probs=184.1

Q ss_pred             cccccceeeecccCC-CCCeeeccc----h-hhhHHHHhHhhhccccccccCCceeeeceeeeecC-----ceeEEEeec
Q 044568            3 CTKLSNFYRSSFNAR-NSPWISRVS----W-TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTS-----VSGKIERPV   71 (257)
Q Consensus         3 ~~~~~~~y~~~~~~~-~~~~i~~~~----~-~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~-----~~~lV~E~~   71 (257)
                      |+.|++||+|++.+. +.+|||++-    + ..|.+.+.         .+.|+|||++...+....     ...+|||||
T Consensus        34 ~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r~knrEl~im~---------~l~HpNIV~L~~~f~~~~~~d~~~lnlVleym  104 (364)
T KOG0658|consen   34 SGSFGVVYQAKLRETEEEVAIKKVLQDKRYKNRELQIMR---------KLDHPNIVRLLYFFSSSTESDEVYLNLVLEYM  104 (364)
T ss_pred             ecccceEEEEEEcCCCceeEEEEecCCCCcCcHHHHHHH---------hcCCcCeeeEEEEEEecCCCchhHHHHHHHhc
Confidence            688999999998888 566777643    2 56777666         889999999999888533     335899999


Q ss_pred             CCCCHHHHHhcc--CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCC-CceEEeeecccccC--CC
Q 044568           72 RNGSLTDIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF-WTAKILDFGLAKLP--NE  146 (257)
Q Consensus        72 ~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~-~~~kl~dfg~~~~~--~~  146 (257)
                      +. +|.+.++..  .+..++...++-+..||..||.|||+.   +|+||||||.|+|+|.+ +.+||+|||.++..  +.
T Consensus       105 P~-tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~---~IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L~~~e  180 (364)
T KOG0658|consen  105 PE-TLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHSH---GICHRDIKPQNLLVDPDTGVLKICDFGSAKVLVKGE  180 (364)
T ss_pred             hH-HHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHhc---CcccCCCChheEEEcCCCCeEEeccCCcceeeccCC
Confidence            85 999999742  467788889999999999999999999   99999999999999975 89999999999864  34


Q ss_pred             CcccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHH-----------Hhhhhh
Q 044568          147 DFVIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVY-----------KCFINR  214 (257)
Q Consensus       147 ~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~-----------~~~~~~  214 (257)
                      +..+..+|..|+|||.+.+. .|+.+.||||.||++.||+-|++-|.+++..+....+....-           +.+...
T Consensus       181 pniSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~s~~dQL~eIik~lG~Pt~e~I~~mn~~y~~~  260 (364)
T KOG0658|consen  181 PNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGDSSVDQLVEIIKVLGTPTREDIKSMNPNYTEF  260 (364)
T ss_pred             CceeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccCCCCHHHHHHHHHHHhCCCCHHHHhhcCcccccc
Confidence            44666788889999999875 599999999999999999999999998643332222111110           000000


Q ss_pred             hhhhhhcCC---CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          215 ELNKLVRGT---KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       215 ~~~~~~~~~---~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ....+....   .+.....++..+++.++++++|.+|. +.|++.
T Consensus       261 ~~p~ik~~~~~~~~~~~~~~d~~dll~~~L~Y~P~~R~~~~~~l~  305 (364)
T KOG0658|consen  261 KFPQIKAHPWHKVFFKRLPPDALDLLSKLLQYSPSKRLSALEALA  305 (364)
T ss_pred             cCcccccccceeecccCCCHHHHHHHHHHhccChhhcCCHHHHhc
Confidence            001111111   14455668899999999999999999 888764

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=1.4e-36  Score=260.33  Aligned_cols=219  Identities=18%  Similarity=0.142  Sum_probs=173.4

Q ss_pred             ccccceeeecc----cCCCCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEE
Q 044568            4 TKLSNFYRSSF----NARNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIE   68 (257)
Q Consensus         4 ~~~~~~y~~~~----~~~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~   68 (257)
                      +.++.||+++.    ..+..+++|...-           .+|++         .+.++.|+||+++.+.+...+..++||
T Consensus         7 G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~---------~l~~l~h~niv~~~~~~~~~~~~~lv~   77 (318)
T cd05582           7 GSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERD---------ILAEVNHPFIVKLHYAFQTEGKLYLIL   77 (318)
T ss_pred             CCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHH---------HHHhCCCCCcccEEEEEEcCCEEEEEE
Confidence            45788998774    3455667765442           12233         333889999999999999999999999


Q ss_pred             eecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC-
Q 044568           69 RPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED-  147 (257)
Q Consensus        69 E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~-  147 (257)
                      ||+++|+|.+++.  ....+++.++..++.|++.||.|||++   +++||||+|+||+++.++.++|+|||++...... 
T Consensus        78 e~~~~~~L~~~l~--~~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~  152 (318)
T cd05582          78 DFLRGGDLFTRLS--KEVMFTEEDVKFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHE  152 (318)
T ss_pred             cCCCCCcHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHeEECCCCcEEEeeccCCcccCCCC
Confidence            9999999999997  456789999999999999999999999   9999999999999999999999999998754322 


Q ss_pred             --cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcC-CC
Q 044568          148 --FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRG-TK  224 (257)
Q Consensus       148 --~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  224 (257)
                        .....+++.|+|||.+.+..++.++|+||||+++|||++|+.||......   ....             ..... ..
T Consensus       153 ~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~---~~~~-------------~i~~~~~~  216 (318)
T cd05582         153 KKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKDRK---ETMT-------------MILKAKLG  216 (318)
T ss_pred             CceecccCChhhcCHHHHcCCCCCCccceeccceEeeeeccCCCCCCCCCHH---HHHH-------------HHHcCCCC
Confidence              23446788999999998888899999999999999999999999754211   0000             01111 12


Q ss_pred             CCHHHHHHHHHHHHHcccCCCCCCC-hHH
Q 044568          225 VDKKNLENLVKVGLWCVQDEPALRP-MKC  252 (257)
Q Consensus       225 ~~~~~~~~l~~l~~~cl~~~p~~RP-~~e  252 (257)
                      .+......+.+++.+||+.||++|| +.+
T Consensus       217 ~p~~~~~~~~~li~~~l~~~P~~R~~a~~  245 (318)
T cd05582         217 MPQFLSPEAQSLLRALFKRNPANRLGAGP  245 (318)
T ss_pred             CCCCCCHHHHHHHHHHhhcCHhHcCCCCC
Confidence            3334456788999999999999999 766

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=100.00  E-value=8.8e-36  Score=255.08  Aligned_cols=235  Identities=17%  Similarity=0.186  Sum_probs=171.9

Q ss_pred             ccccceeeecccCCCC-----CeeeccchhhhHH-HHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHH
Q 044568            4 TKLSNFYRSSFNARNS-----PWISRVSWTADIE-VLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLT   77 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~-----~~i~~~~~~~~~~-~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~   77 (257)
                      +.++.||+|+......     +++|........+ ...+.........+.|+|++++.+.+... ..++|+||+++|+|.
T Consensus        18 G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~-~~~~v~e~~~~g~l~   96 (316)
T cd05108          18 GAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQLITQLMPFGCLL   96 (316)
T ss_pred             CCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCC-CceeeeecCCCCCHH
Confidence            5689999998654443     5666643110000 00000011133388899999999988764 567999999999999


Q ss_pred             HHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-----cccc
Q 044568           78 DIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-----VIDK  152 (257)
Q Consensus        78 ~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-----~~~~  152 (257)
                      +++.. ....+++.....++.|++.||.|||++   +++||||||+||+++.++.+||+|||+++......     ....
T Consensus        97 ~~l~~-~~~~~~~~~~~~~~~qi~~~L~~LH~~---~iiH~dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~  172 (316)
T cd05108          97 DYVRE-HKDNIGSQYLLNWCVQIAKGMNYLEER---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGADEKEYHAEGGK  172 (316)
T ss_pred             HHHHh-ccccCCHHHHHHHHHHHHHHHHHHHhc---CeeccccchhheEecCCCcEEEccccccccccCCCcceeccCCc
Confidence            99985 455688999999999999999999999   99999999999999999999999999987543222     1122


Q ss_pred             CCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHH
Q 044568          153 RDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLE  231 (257)
Q Consensus       153 ~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (257)
                      .+..|++||.+.+..++.++||||||+++||+++ |..||......  .  .....         .... ....+..+..
T Consensus       173 ~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~~~~--~--~~~~~---------~~~~-~~~~~~~~~~  238 (316)
T cd05108         173 VPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPAS--E--ISSIL---------EKGE-RLPQPPICTI  238 (316)
T ss_pred             cceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHH--H--HHHHH---------hCCC-CCCCCCCCCH
Confidence            3456999999998889999999999999999998 99999754111  0  11110         0000 0011223456


Q ss_pred             HHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          232 NLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       232 ~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      .+.+++.+||+.+|.+|| +.+++..|
T Consensus       239 ~~~~li~~cl~~~p~~Rps~~~l~~~l  265 (316)
T cd05108         239 DVYMIMVKCWMIDADSRPKFRELIIEF  265 (316)
T ss_pred             HHHHHHHHHccCChhhCcCHHHHHHHH
Confidence            788999999999999999 99998753

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=100.00  E-value=1.2e-35  Score=246.86  Aligned_cols=225  Identities=17%  Similarity=0.246  Sum_probs=171.7

Q ss_pred             ccccceeeecc---cCCCCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEe
Q 044568            4 TKLSNFYRSSF---NARNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIER   69 (257)
Q Consensus         4 ~~~~~~y~~~~---~~~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E   69 (257)
                      +.++.||+|.+   .++..+++|....           .+|++.         +.++.|+|++++.+.+. .+..++|||
T Consensus         6 G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~---------l~~l~h~~i~~~~~~~~-~~~~~lv~e   75 (257)
T cd05116           6 GNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANV---------MQQLDNPYIVRMIGICE-AESWMLVME   75 (257)
T ss_pred             cCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHH---------HHhCCCCCcceEEEEEc-CCCcEEEEe
Confidence            56889999864   3455666765432           222333         33788999999988765 556789999


Q ss_pred             ecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-
Q 044568           70 PVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-  148 (257)
Q Consensus        70 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-  148 (257)
                      |+++|+|.+++.  ....+++..+..++.|++.|+.|||++   +++|+||+|.||+++.++.++|+|||.+....... 
T Consensus        76 ~~~~~~L~~~l~--~~~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~  150 (257)
T cd05116          76 LAELGPLNKFLQ--KNKHVTEKNITELVHQVSMGMKYLEET---NFVHRDLAARNVLLVTQHYAKISDFGLSKALGADEN  150 (257)
T ss_pred             cCCCCcHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccchhhEEEcCCCeEEECCCccccccCCCCC
Confidence            999999999997  445789999999999999999999999   99999999999999999999999999987543221 


Q ss_pred             -----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcC
Q 044568          149 -----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRG  222 (257)
Q Consensus       149 -----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (257)
                           ....++..|+|||.+....++.++|+||||+++||+++ |..||......    .....    .....      .
T Consensus       151 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~----~~~~~----i~~~~------~  216 (257)
T cd05116         151 YYKAKTHGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKGN----EVTQM----IESGE------R  216 (257)
T ss_pred             eeeecCCCCCCccccCHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHH----HHHHH----HHCCC------C
Confidence                 11122457999999988888999999999999999998 99999744111    11000    00000      1


Q ss_pred             CCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          223 TKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       223 ~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ...+...+..+.+++.+||+.||++|| +++|.+.|
T Consensus       217 ~~~~~~~~~~l~~li~~~~~~~p~~Rp~~~~i~~~l  252 (257)
T cd05116         217 MECPQRCPPEMYDLMKLCWTYGVDERPGFAVVELRL  252 (257)
T ss_pred             CCCCCCCCHHHHHHHHHHhccCchhCcCHHHHHHHH
Confidence            123334567899999999999999999 99998875

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=100.00  E-value=1e-35  Score=254.87  Aligned_cols=230  Identities=16%  Similarity=0.131  Sum_probs=174.0

Q ss_pred             ccccceeeecccCC-CCCeeeccchh-----hhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHH
Q 044568            4 TKLSNFYRSSFNAR-NSPWISRVSWT-----ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLT   77 (257)
Q Consensus         4 ~~~~~~y~~~~~~~-~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~   77 (257)
                      +.++.||+++...+ +.+++|.....     ...+..... .........|+||+++.+.+...+..++||||+++|+|.
T Consensus         6 G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e-~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~gg~L~   84 (316)
T cd05592           6 GSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVE-RRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLNGGDLM   84 (316)
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHH-HHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCCCcHH
Confidence            57899999997654 45777765421     111111100 000111347999999999999999999999999999999


Q ss_pred             HHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC---CCcccccCC
Q 044568           78 DIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN---EDFVIDKRD  154 (257)
Q Consensus        78 ~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~---~~~~~~~~~  154 (257)
                      +++.  ....+++.++..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++....   .......+|
T Consensus        85 ~~~~--~~~~~~~~~~~~~~~qi~~al~~LH~~---~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~~~~~~~~~gt  159 (316)
T cd05592          85 FHIQ--SSGRFDEARARFYAAEIICGLQFLHKK---GIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGEGKASTFCGT  159 (316)
T ss_pred             HHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHC---CEEeCCCCHHHeEECCCCCEEEccCcCCeECCCCCCccccccCC
Confidence            9997  445789999999999999999999999   99999999999999999999999999986432   222344678


Q ss_pred             CCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHH
Q 044568          155 KGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLV  234 (257)
Q Consensus       155 ~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  234 (257)
                      +.|+|||.+.+..++.++|+|||||++|||++|+.||.....   .......          ..  .....+......+.
T Consensus       160 ~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~~~~---~~~~~~i----------~~--~~~~~~~~~~~~~~  224 (316)
T cd05592         160 PDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGEDE---DELFDSI----------LN--DRPHFPRWISKEAK  224 (316)
T ss_pred             ccccCHHHHcCCCCCCcccchhHHHHHHHHHhCCCCCCCCCH---HHHHHHH----------Hc--CCCCCCCCCCHHHH
Confidence            999999999988899999999999999999999999975421   1111100          00  01122334456788


Q ss_pred             HHHHHcccCCCCCCC-hH-HHH
Q 044568          235 KVGLWCVQDEPALRP-MK-CAV  254 (257)
Q Consensus       235 ~l~~~cl~~~p~~RP-~~-ei~  254 (257)
                      +++.+||+.||.+|| +. +++
T Consensus       225 ~ll~~~l~~~P~~R~~~~~~l~  246 (316)
T cd05592         225 DCLSKLFERDPTKRLGVDGDIR  246 (316)
T ss_pred             HHHHHHccCCHHHcCCChHHHH
Confidence            999999999999999 65 553

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=100.00  E-value=1.1e-35  Score=253.03  Aligned_cols=236  Identities=15%  Similarity=0.160  Sum_probs=173.5

Q ss_pred             ccccceeeeccc-CCCCCeeeccch----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +.++.||+++.. ++..+++|....          .+|++.+.         .+.|+|++++.+.+...+..++||||++
T Consensus        16 G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~---------~l~h~niv~~~~~~~~~~~~~lv~e~~~   86 (303)
T cd07869          16 GSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLK---------GLKHANIVLLHDIIHTKETLTLVFEYVH   86 (303)
T ss_pred             cCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHh---------hCCCCCcCeEEEEEecCCeEEEEEECCC
Confidence            568899999976 456677776542          23444444         8889999999999999999999999996


Q ss_pred             CCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC---Ccc
Q 044568           73 NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE---DFV  149 (257)
Q Consensus        73 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~---~~~  149 (257)
                       ++|.+++.. ....++...+..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++.....   ...
T Consensus        87 -~~l~~~~~~-~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~  161 (303)
T cd07869          87 -TDLCQYMDK-HPGGLHPENVKLFLFQLLRGLSYIHQR---YILHRDLKPQNLLISDTGELKLADFGLARAKSVPSHTYS  161 (303)
T ss_pred             -cCHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEECCCCcceeccCCCccCC
Confidence             688888865 456789999999999999999999999   999999999999999999999999998864322   223


Q ss_pred             cccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhh--hhh---h---hh-
Q 044568          150 IDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFIN--REL---N---KL-  219 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~--~~~---~---~~-  219 (257)
                      ...+++.|+|||.+.+. .++.++||||+||++|||++|..||.........  +..........  ...   .   .. 
T Consensus       162 ~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (303)
T cd07869         162 NEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMKDIQDQ--LERIFLVLGTPNEDTWPGVHSLPHFK  239 (303)
T ss_pred             CCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHH--HHHHHHHhCCCChhhccchhhccccc
Confidence            44667889999998654 5788999999999999999999999754221111  11110000000  000   0   00 


Q ss_pred             ------hcCCCC-----CHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          220 ------VRGTKV-----DKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       220 ------~~~~~~-----~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                            ..+...     .......+.+++.+||+.||++|| +.|+++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dp~~R~s~~~~l~  287 (303)
T cd07869         240 PERFTLYSPKNLRQAWNKLSYVNHAEDLASKLLQCFPKNRLSAQAALS  287 (303)
T ss_pred             cccccccCCccHHHHhhccCCChHHHHHHHHHhccCchhccCHHHHhc
Confidence                  000000     001124677899999999999999 999975

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=100.00  E-value=6.2e-36  Score=256.62  Aligned_cols=224  Identities=16%  Similarity=0.180  Sum_probs=171.6

Q ss_pred             ccccceeeecccC-CCCCeeeccchh-----hhHHHHhHhhhccccc-cccCCceeeeceeeeecCceeEEEeecCCCCH
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSWT-----ADIEVLSVAMRGSKCT-RIRGGLLLNVPVRAKLTSVSGKIERPVRNGSL   76 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~-~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL   76 (257)
                      +.++.||+++... +..+++|...-.     ...+... .... .+. ...|+|++++.+.+...+..++||||+++|+|
T Consensus         6 G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~-~e~~-~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~g~L   83 (320)
T cd05590           6 GSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTM-TEKR-ILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNGGDL   83 (320)
T ss_pred             CCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHH-HHHH-HHHhccCCCchhceeeEEEcCCEEEEEEcCCCCchH
Confidence            5689999999765 455677765421     1111110 0000 111 23699999999999999999999999999999


Q ss_pred             HHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC---CCcccccC
Q 044568           77 TDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN---EDFVIDKR  153 (257)
Q Consensus        77 ~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~---~~~~~~~~  153 (257)
                      .+++.  ....+++..+..++.|++.||.|||++   +++||||||+||+++.++.++|+|||++....   .......|
T Consensus        84 ~~~i~--~~~~l~~~~~~~~~~ql~~~L~~lH~~---~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~~~~~~~~~~g  158 (320)
T cd05590          84 MFHIQ--KSRRFDEARARFYAAEITSALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGKTTSTFCG  158 (320)
T ss_pred             HHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCCHHHeEECCCCcEEEeeCCCCeecCcCCCccccccc
Confidence            99997  446799999999999999999999999   99999999999999999999999999876421   22234568


Q ss_pred             CCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcC-CCCCHHHHHH
Q 044568          154 DKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRG-TKVDKKNLEN  232 (257)
Q Consensus       154 ~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  232 (257)
                      |+.|+|||.+.+..++.++|+||||+++|||++|+.||.......   ...             ..... ...+......
T Consensus       159 t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~---~~~-------------~i~~~~~~~~~~~~~~  222 (320)
T cd05590         159 TPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAENEDD---LFE-------------AILNDEVVYPTWLSQD  222 (320)
T ss_pred             CccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHH---HHH-------------HHhcCCCCCCCCCCHH
Confidence            889999999998889999999999999999999999997542111   110             11111 1223334567


Q ss_pred             HHHHHHHcccCCCCCCC-h
Q 044568          233 LVKVGLWCVQDEPALRP-M  250 (257)
Q Consensus       233 l~~l~~~cl~~~p~~RP-~  250 (257)
                      +.+++.+||+.||++|| +
T Consensus       223 ~~~li~~~L~~dP~~R~~~  241 (320)
T cd05590         223 AVDILKAFMTKNPTMRLGS  241 (320)
T ss_pred             HHHHHHHHcccCHHHCCCC
Confidence            89999999999999999 7

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=100.00  E-value=7e-36  Score=256.64  Aligned_cols=226  Identities=19%  Similarity=0.190  Sum_probs=173.1

Q ss_pred             ccccceeeecccC-CCCCeeeccchh-----hhHHHHhHhhh-ccccccccCCceeeeceeeeecCceeEEEeecCCCCH
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSWT-----ADIEVLSVAMR-GSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSL   76 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~~-----~~~~~~~~~~~-~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL   76 (257)
                      +.++.||++.... +..+++|...-.     .+.+.+..... -..+.++.|+|++++.+.+...+..++||||+++|+|
T Consensus        10 G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L   89 (324)
T cd05589          10 GHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFVMEYAAGGDL   89 (324)
T ss_pred             cCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEEEcCCCCCcH
Confidence            5688999998654 556677765421     11221110000 0023467899999999999999999999999999999


Q ss_pred             HHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC---CCcccccC
Q 044568           77 TDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN---EDFVIDKR  153 (257)
Q Consensus        77 ~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~---~~~~~~~~  153 (257)
                      ...+.   ...+++..+..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++....   .......+
T Consensus        90 ~~~~~---~~~l~~~~~~~~~~qi~~al~~lH~~---~ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~g  163 (324)
T cd05589          90 MMHIH---TDVFSEPRAVFYAACVVLGLQYLHEN---KIVYRDLKLDNLLLDTEGFVKIADFGLCKEGMGFGDRTSTFCG  163 (324)
T ss_pred             HHHhh---cCCCCHHHHHHHHHHHHHHHHHHHhC---CeEecCCCHHHeEECCCCcEEeCcccCCccCCCCCCccccccc
Confidence            99885   35799999999999999999999999   99999999999999999999999999876422   22234467


Q ss_pred             CCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc-CCCCCHHHHHH
Q 044568          154 DKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR-GTKVDKKNLEN  232 (257)
Q Consensus       154 ~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  232 (257)
                      ++.|+|||.+.+..++.++||||||+++|||++|+.||......   ....             .... ....+...+..
T Consensus       164 ~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~~~~~---~~~~-------------~i~~~~~~~p~~~~~~  227 (324)
T cd05589         164 TPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGDDEE---EVFD-------------SIVNDEVRYPRFLSRE  227 (324)
T ss_pred             CccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCCCCHH---HHHH-------------HHHhCCCCCCCCCCHH
Confidence            88999999999888999999999999999999999999754211   1110             0111 11233345577


Q ss_pred             HHHHHHHcccCCCCCCC-hH
Q 044568          233 LVKVGLWCVQDEPALRP-MK  251 (257)
Q Consensus       233 l~~l~~~cl~~~p~~RP-~~  251 (257)
                      +.+++.+||+.||.+|| ++
T Consensus       228 ~~~li~~~L~~dP~~R~~~~  247 (324)
T cd05589         228 AISIMRRLLRRNPERRLGSG  247 (324)
T ss_pred             HHHHHHHHhhcCHhHcCCCC
Confidence            88999999999999998 54

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=100.00  E-value=2.9e-35  Score=244.87  Aligned_cols=227  Identities=21%  Similarity=0.307  Sum_probs=177.2

Q ss_pred             ccccceeeecccCCCCCeeeccc--------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS--------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGS   75 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gs   75 (257)
                      +.++.||+++...+..+++|...        +.+|++++.         ++.|+|++++.+.+. .+..++||||+++|+
T Consensus        17 g~~~~v~~~~~~~~~~~~lK~~~~~~~~~~~~~~E~~~l~---------~l~h~~i~~~~~~~~-~~~~~~v~e~~~~~~   86 (260)
T cd05069          17 GCFGEVWMGTWNGTTKVAIKTLKPGTMMPEAFLQEAQIMK---------KLRHDKLVPLYAVVS-EEPIYIVTEFMGKGS   86 (260)
T ss_pred             cCCCeEEEEEEcCCceEEEEEcccCCccHHHHHHHHHHHH---------hCCCCCeeeEEEEEc-CCCcEEEEEcCCCCC
Confidence            46789999998877777777543        234445444         888999999987764 567889999999999


Q ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc----ccc
Q 044568           76 LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF----VID  151 (257)
Q Consensus        76 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~----~~~  151 (257)
                      |.+++.......+++..+..++.|++.||.|||+.   +++|+||+|+||++++++.++|+|||.+.......    ...
T Consensus        87 L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~  163 (260)
T cd05069          87 LLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERM---NYIHRDLRAANILVGDNLVCKIADFGLARLIEDNEYTARQGA  163 (260)
T ss_pred             HHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CEeecccCcceEEEcCCCeEEECCCccceEccCCcccccCCC
Confidence            99999764455689999999999999999999999   99999999999999999999999999987543221    122


Q ss_pred             cCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHH
Q 044568          152 KRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNL  230 (257)
Q Consensus       152 ~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (257)
                      .++..|+|||...+..++.++|+||||+++||+++ |..||.......   .. ...         .... ....+...+
T Consensus       164 ~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~---~~-~~~---------~~~~-~~~~~~~~~  229 (260)
T cd05069         164 KFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMVNRE---VL-EQV---------ERGY-RMPCPQGCP  229 (260)
T ss_pred             ccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCCHHH---HH-HHH---------HcCC-CCCCCcccC
Confidence            34556999999988889999999999999999999 899997542111   00 000         0000 012234456


Q ss_pred             HHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          231 ENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       231 ~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ..+.+++.+||+.||++|| +++++++|
T Consensus       230 ~~~~~li~~~l~~~p~~Rp~~~~i~~~l  257 (260)
T cd05069         230 ESLHELMKLCWKKDPDERPTFEYIQSFL  257 (260)
T ss_pred             HHHHHHHHHHccCCcccCcCHHHHHHHH
Confidence            7899999999999999999 99999875

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.1e-35  Score=244.93  Aligned_cols=235  Identities=23%  Similarity=0.249  Sum_probs=180.4

Q ss_pred             cccccceeeecccCCCCCeeeccchhhh-HHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHHHh
Q 044568            3 CTKLSNFYRSSFNARNSPWISRVSWTAD-IEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIF   81 (257)
Q Consensus         3 ~~~~~~~y~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~   81 (257)
                      ++.++.||+++.. +..+++|....... .+.+. ... ..+.++.|+|++++.+.+...+..++||||+++++|.+++.
T Consensus        16 ~g~~g~v~~~~~~-~~~v~iK~~~~~~~~~~~~~-~e~-~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~   92 (256)
T cd05039          16 KGEFGDVMLGDYR-GQKVAVKCLKDDSTAAQAFL-AEA-SVMTTLRHPNLVQLLGVVLQGNPLYIVTEYMAKGSLVDYLR   92 (256)
T ss_pred             cCCCceEEEEEec-CcEEEEEEeccchhHHHHHH-HHH-HHHHhcCCcceeeeEEEEcCCCCeEEEEEecCCCcHHHHHH
Confidence            4678999999875 66778877653211 11110 011 13348889999999999999999999999999999999997


Q ss_pred             ccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcccccCCCCccCcc
Q 044568           82 CSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMAPE  161 (257)
Q Consensus        82 ~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~aPE  161 (257)
                      ......+++.....++.|++.|+.|||++   +++|+||+|+||+++.++.++|+|||.++...........+..|+|||
T Consensus        93 ~~~~~~~~~~~~~~~~~qi~~~l~~lh~~---~i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~ape  169 (256)
T cd05039          93 SRGRAVITLAQQLGFALDVCEGMEYLEEK---NFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQDSGKLPVKWTAPE  169 (256)
T ss_pred             hcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CccchhcccceEEEeCCCCEEEcccccccccccccccCCCcccccCch
Confidence            54445799999999999999999999999   999999999999999999999999999876543333334455699999


Q ss_pred             cccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHc
Q 044568          162 CYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWC  240 (257)
Q Consensus       162 ~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~c  240 (257)
                      .+....++.++|+||||+++||+++ |..||.......    .......         .. ....+...++.+.+++.+|
T Consensus       170 ~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~----~~~~~~~---------~~-~~~~~~~~~~~~~~li~~~  235 (256)
T cd05039         170 ALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD----VVPHVEK---------GY-RMEAPEGCPPEVYKVMKDC  235 (256)
T ss_pred             hhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCCCHHH----HHHHHhc---------CC-CCCCccCCCHHHHHHHHHH
Confidence            9988888999999999999999997 999986441110    1000000         00 0112333457899999999


Q ss_pred             ccCCCCCCC-hHHHHHhC
Q 044568          241 VQDEPALRP-MKCAVMML  257 (257)
Q Consensus       241 l~~~p~~RP-~~ei~~~L  257 (257)
                      |+.+|++|| +.|+++.|
T Consensus       236 l~~~p~~Rp~~~~l~~~l  253 (256)
T cd05039         236 WELDPAKRPTFKQLREQL  253 (256)
T ss_pred             hccChhhCcCHHHHHHHH
Confidence            999999999 99999865

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=100.00  E-value=2.1e-35  Score=248.62  Aligned_cols=234  Identities=15%  Similarity=0.165  Sum_probs=175.5

Q ss_pred             cccccceeeeccc-CCCCCeeeccchhhhH---HHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHH
Q 044568            3 CTKLSNFYRSSFN-ARNSPWISRVSWTADI---EVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTD   78 (257)
Q Consensus         3 ~~~~~~~y~~~~~-~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~   78 (257)
                      .+.++.||+++.. +++.+++|...-....   ..-.....-..+.++.|+|++++...+...+..++||||+++|+|.+
T Consensus         3 ~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L~~   82 (280)
T cd05608           3 KGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDLRY   82 (280)
T ss_pred             CCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCCHHH
Confidence            3678999999865 4556777765421100   00000001112337889999999999999999999999999999998


Q ss_pred             HHhcc--CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---cccccC
Q 044568           79 IIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---FVIDKR  153 (257)
Q Consensus        79 ~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~~~~~~  153 (257)
                      .+...  ....+++..+..++.|++.||.|||++   +++||||+|+||+++.++.++|+|||.+......   .....+
T Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~g  159 (280)
T cd05608          83 HIYNVDEENPGFPEPRACFYTAQIISGLEHLHQR---RIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQSKTKGYAG  159 (280)
T ss_pred             HHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEeeCccceecCCCCccccccCC
Confidence            88532  345689999999999999999999999   9999999999999999999999999998643322   123467


Q ss_pred             CCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhh-cCCCCCHHHHHH
Q 044568          154 DKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLV-RGTKVDKKNLEN  232 (257)
Q Consensus       154 ~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  232 (257)
                      ++.|+|||.+.+..++.++|+||||+++|||++|+.||.............            .... .+...+...+..
T Consensus       160 ~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~  227 (280)
T cd05608         160 TPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELK------------QRILNDSVTYPDKFSPA  227 (280)
T ss_pred             CcCccCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCcchhHHHHH------------HhhcccCCCCcccCCHH
Confidence            889999999999899999999999999999999999997543221111100            0111 111334455678


Q ss_pred             HHHHHHHcccCCCCCCC-hH
Q 044568          233 LVKVGLWCVQDEPALRP-MK  251 (257)
Q Consensus       233 l~~l~~~cl~~~p~~RP-~~  251 (257)
                      +.+++.+||+.||++|| ++
T Consensus       228 ~~~li~~~l~~~P~~R~~~~  247 (280)
T cd05608         228 SKSFCEALLAKDPEKRLGFR  247 (280)
T ss_pred             HHHHHHHHhcCCHHHhcCCC
Confidence            89999999999999999 63

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=100.00  E-value=2e-35  Score=248.09  Aligned_cols=228  Identities=15%  Similarity=0.198  Sum_probs=176.8

Q ss_pred             ccccceeeecccCC------CCCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEE
Q 044568            4 TKLSNFYRSSFNAR------NSPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~~~~------~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV   67 (257)
                      +.++.||+++..+.      ..+++|...          +.+|++.+.         ++.|+|++++.+.+...+..++|
T Consensus        16 g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~---------~l~~~~i~~~~~~~~~~~~~~lv   86 (280)
T cd05049          16 GAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLT---------NFQHENIVKFYGVCTEGDPPIMV   86 (280)
T ss_pred             cCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHH---------hcCCCCchheeeEEecCCCeEEE
Confidence            46789999986443      556676543          233444444         78899999999999999999999


Q ss_pred             EeecCCCCHHHHHhccC------------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEE
Q 044568           68 ERPVRNGSLTDIIFCSA------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKI  135 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl  135 (257)
                      |||+++|+|.+++....            ...+++.++..++.|++.|+.|||++   +++|+||+|+||+++.++.++|
T Consensus        87 ~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~---~i~h~dlkp~nili~~~~~~kl  163 (280)
T cd05049          87 FEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQ---HFVHRDLATRNCLVGYDLVVKI  163 (280)
T ss_pred             EecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhC---CeeccccccceEEEcCCCeEEE
Confidence            99999999999997421            24578899999999999999999999   9999999999999999999999


Q ss_pred             eeecccccCCCCc-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHH
Q 044568          136 LDFGLAKLPNEDF-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYK  209 (257)
Q Consensus       136 ~dfg~~~~~~~~~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~  209 (257)
                      +|||.+.......     ....++..|+|||.+.+..++.++||||||+++|||++ |..||.......   ... ..  
T Consensus       164 ~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~~~~---~~~-~~--  237 (280)
T cd05049         164 GDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLSNEE---VIE-CI--  237 (280)
T ss_pred             CCcccceecccCcceecCCCCcccceecChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCCCHHH---HHH-HH--
Confidence            9999886432211     22234567999999998899999999999999999998 999986542111   000 00  


Q ss_pred             hhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          210 CFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                        ..    ..  ....+...+..+.+++.+||+.||.+|| +.|+++.|
T Consensus       238 --~~----~~--~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~~l  278 (280)
T cd05049         238 --TQ----GR--LLQRPRTCPSEVYDIMLGCWKRDPQQRINIKDIHERL  278 (280)
T ss_pred             --Hc----CC--cCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHh
Confidence              00    00  0122334557789999999999999999 99999875

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=100.00  E-value=3.1e-35  Score=243.49  Aligned_cols=236  Identities=17%  Similarity=0.230  Sum_probs=179.1

Q ss_pred             cccccceeeeccc-CCCCCeeeccchh--hhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHH
Q 044568            3 CTKLSNFYRSSFN-ARNSPWISRVSWT--ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDI   79 (257)
Q Consensus         3 ~~~~~~~y~~~~~-~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~   79 (257)
                      .+.++.+|+++.. ++..+++|.....  ...........-..+.+++|+|++++.+.+...+..++||||+++++|.++
T Consensus        10 ~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~   89 (256)
T cd08529          10 KGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVMEYAENGDLHKL   89 (256)
T ss_pred             CCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEEEeCCCCcHHHH
Confidence            3577899999865 4566677754421  000000110000133488999999999999999999999999999999999


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc---ccccCCCC
Q 044568           80 IFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF---VIDKRDKG  156 (257)
Q Consensus        80 l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~---~~~~~~~~  156 (257)
                      +.......+++..+..++.|++.||.|||+.   +++|+|++|+||+++.++.++|+|||.+.......   ....++..
T Consensus        90 l~~~~~~~~~~~~~~~i~~~l~~al~~lH~~---~i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~  166 (256)
T cd08529          90 LKMQRGRPLPEDQVWRFFIQILLGLAHLHSK---KILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNFANTIVGTPY  166 (256)
T ss_pred             HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEEeCCCCEEEcccccceeccCccchhhccccCcc
Confidence            9864456789999999999999999999999   99999999999999999999999999877543322   23356778


Q ss_pred             ccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHH
Q 044568          157 YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKV  236 (257)
Q Consensus       157 ~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  236 (257)
                      |+|||+..+..++.++|+||||+++|+|++|+.||....   .......         .......  ..+......+.++
T Consensus       167 y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~---~~~~~~~---------~~~~~~~--~~~~~~~~~~~~~  232 (256)
T cd08529         167 YLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANN---QGALILK---------IIRGVFP--PVSQMYSQQLAQL  232 (256)
T ss_pred             ccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCC---HHHHHHH---------HHcCCCC--CCccccCHHHHHH
Confidence            999999998889999999999999999999999997552   1110000         0001111  2222455779999


Q ss_pred             HHHcccCCCCCCC-hHHHHH
Q 044568          237 GLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       237 ~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +.+||+.+|++|| +.++++
T Consensus       233 i~~~l~~~p~~Rp~~~~ll~  252 (256)
T cd08529         233 IDQCLTKDYRQRPDTFQLLR  252 (256)
T ss_pred             HHHHccCCcccCcCHHHHhh
Confidence            9999999999999 999986

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=100.00  E-value=8.4e-36  Score=256.05  Aligned_cols=226  Identities=18%  Similarity=0.153  Sum_probs=174.1

Q ss_pred             ccccceeeeccc-CCCCCeeeccchhh-----hHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHH
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSWTA-----DIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLT   77 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~   77 (257)
                      +.++.||+++.. ++..+++|......     +.+.+. ......+..++|+|++++...+...+..++||||+++|+|.
T Consensus         6 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~-~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~   84 (323)
T cd05575           6 GSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIM-AERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNGGELF   84 (323)
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHH-HHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCCCCHH
Confidence            568899999975 45667788765321     111111 11111233688999999999999999999999999999999


Q ss_pred             HHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC---CCcccccCC
Q 044568           78 DIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN---EDFVIDKRD  154 (257)
Q Consensus        78 ~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~---~~~~~~~~~  154 (257)
                      +++.  ....+++..+..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++....   .......++
T Consensus        85 ~~l~--~~~~~~~~~~~~~~~qi~~~l~~lH~~---givH~dikp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt  159 (323)
T cd05575          85 FHLQ--RERSFPEPRARFYAAEIASALGYLHSL---NIIYRDLKPENILLDSQGHVVLTDFGLCKEGIEHSKTTSTFCGT  159 (323)
T ss_pred             HHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCCHHHeEECCCCcEEEeccCCCcccccCCCccccccCC
Confidence            9997  456789999999999999999999999   99999999999999999999999999886422   122344678


Q ss_pred             CCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc-CCCCCHHHHHHH
Q 044568          155 KGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR-GTKVDKKNLENL  233 (257)
Q Consensus       155 ~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l  233 (257)
                      +.|+|||.+.+..++.++||||||+++|||++|..||......   ....             .... ....+......+
T Consensus       160 ~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~---~~~~-------------~i~~~~~~~~~~~~~~~  223 (323)
T cd05575         160 PEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRDTA---EMYD-------------NILNKPLRLKPNISVSA  223 (323)
T ss_pred             hhhcChhhhcCCCCCccccccccchhhhhhhcCCCCCCCCCHH---HHHH-------------HHHcCCCCCCCCCCHHH
Confidence            8999999999888999999999999999999999999754211   0000             0111 112223346778


Q ss_pred             HHHHHHcccCCCCCCC-hH
Q 044568          234 VKVGLWCVQDEPALRP-MK  251 (257)
Q Consensus       234 ~~l~~~cl~~~p~~RP-~~  251 (257)
                      .+++.+||+.||.+|| ++
T Consensus       224 ~~li~~~l~~~p~~R~~~~  242 (323)
T cd05575         224 RHLLEGLLQKDRTKRLGAK  242 (323)
T ss_pred             HHHHHHHhhcCHHhCCCCC
Confidence            9999999999999999 74

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=100.00  E-value=2.6e-35  Score=245.73  Aligned_cols=231  Identities=16%  Similarity=0.212  Sum_probs=179.3

Q ss_pred             ccccceeeeccc-CCCCCeeeccc------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||+++.. ++..+++|...            +.+|++.+.         ++.|+|++++.+.+...+..++|+||
T Consensus        13 g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~---------~l~h~~i~~~~~~~~~~~~~~~v~e~   83 (267)
T cd08228          13 GQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLK---------QLNHPNVIKYLDSFIEDNELNIVLEL   83 (267)
T ss_pred             CCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHH---------hCCCcceeeeeeeEEECCeEEEEEEe
Confidence            568899999965 55666777432            223333333         88999999999999999999999999


Q ss_pred             cCCCCHHHHHhcc--CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc
Q 044568           71 VRNGSLTDIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF  148 (257)
Q Consensus        71 ~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~  148 (257)
                      +++|+|.+++...  ....++...+..++.|++.||.|||++   +++|+||+|+||+++.++.++++|||.+.......
T Consensus        84 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~~~~  160 (267)
T cd08228          84 ADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKT  160 (267)
T ss_pred             cCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCCHHHEEEcCCCCEEECccccceeccchh
Confidence            9999999988532  234588899999999999999999999   99999999999999999999999999877543322


Q ss_pred             ---ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCC
Q 044568          149 ---VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKV  225 (257)
Q Consensus       149 ---~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (257)
                         ....++..|+|||.+.+..++.++|+||||+++||+++|..||.........     +..      .......+...
T Consensus       161 ~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~~~~~~~-----~~~------~~~~~~~~~~~  229 (267)
T cd08228         161 TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLFS-----LCQ------KIEQCDYPPLP  229 (267)
T ss_pred             HHHhcCCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCccccccHHH-----HHH------HHhcCCCCCCC
Confidence               2345677899999998888899999999999999999999999654222111     000      01111111122


Q ss_pred             CHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          226 DKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       226 ~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ....+..+.+++.+||+.+|++|| +.|+++.|
T Consensus       230 ~~~~~~~~~~li~~cl~~~p~~Rp~~~~vl~~~  262 (267)
T cd08228         230 TEHYSEKLRELVSMCIYPDPDQRPDIGYVHQIA  262 (267)
T ss_pred             hhhcCHHHHHHHHHHCCCCcccCcCHHHHHHHH
Confidence            334557799999999999999999 99999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=100.00  E-value=4e-36  Score=258.28  Aligned_cols=232  Identities=16%  Similarity=0.148  Sum_probs=175.0

Q ss_pred             ccccceeeeccc-CCCCCeeeccchhh---hHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHH
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSWTA---DIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDI   79 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~   79 (257)
                      +.++.||+++.. ++..+++|......   .-+..........+..+.|+|++++...+...+..++||||+++|+|.++
T Consensus         6 G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~   85 (325)
T cd05594           6 GTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFH   85 (325)
T ss_pred             CCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCCCcHHHH
Confidence            568999999854 45556666554211   00111111111133478899999999999999999999999999999999


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHhh-CCCCCeeeccCCCCceeeCCCCceEEeeecccccCC---CCcccccCCC
Q 044568           80 IFCSAERNPYWNQRVRIALDVAKGILYLHD-ECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN---EDFVIDKRDK  155 (257)
Q Consensus        80 l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~---~~~~~~~~~~  155 (257)
                      +.  ....+++.++..++.|++.||.|||+ +   +++||||||+||+++.++.+||+|||+++...   .......+++
T Consensus        86 l~--~~~~l~~~~~~~~~~qi~~aL~~lH~~~---~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~  160 (325)
T cd05594          86 LS--RERVFSEDRARFYGAEIVSALDYLHSEK---NVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTP  160 (325)
T ss_pred             HH--hcCCCCHHHHHHHHHHHHHHHHHHHhcC---CEEecCCCCCeEEECCCCCEEEecCCCCeecCCCCcccccccCCc
Confidence            87  45678999999999999999999997 7   99999999999999999999999999876422   1223446889


Q ss_pred             CccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHH
Q 044568          156 GYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVK  235 (257)
Q Consensus       156 ~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  235 (257)
                      .|+|||.+.+..++.++||||||+++|||++|..||.......   ....     .       .......+....+.+.+
T Consensus       161 ~y~aPE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~~~~~~---~~~~-----i-------~~~~~~~p~~~~~~~~~  225 (325)
T cd05594         161 EYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEK---LFEL-----I-------LMEEIRFPRTLSPEAKS  225 (325)
T ss_pred             ccCCHHHHccCCCCCccccccccceeeeeccCCCCCCCCCHHH---HHHH-----H-------hcCCCCCCCCCCHHHHH
Confidence            9999999998889999999999999999999999997542110   0000     0       00111233344567889


Q ss_pred             HHHHcccCCCCCC-----C-hHHHHH
Q 044568          236 VGLWCVQDEPALR-----P-MKCAVM  255 (257)
Q Consensus       236 l~~~cl~~~p~~R-----P-~~ei~~  255 (257)
                      ++.+||+.||++|     | +.++++
T Consensus       226 li~~~L~~dP~~R~~~~~~~~~~il~  251 (325)
T cd05594         226 LLSGLLKKDPKQRLGGGPDDAKEIMQ  251 (325)
T ss_pred             HHHHHhhcCHHHhCCCCCCCHHHHhc
Confidence            9999999999999     5 677654

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=100.00  E-value=2.8e-35  Score=245.44  Aligned_cols=227  Identities=22%  Similarity=0.304  Sum_probs=176.5

Q ss_pred             ccccceeeecccCCCCCeeeccc--------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS--------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGS   75 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gs   75 (257)
                      +.++.||+++..++..+++|...        +.+|++.+.         ++.|+|++++.+... .+..++||||+++|+
T Consensus        17 g~~~~v~~~~~~~~~~valK~~~~~~~~~~~~~~E~~~l~---------~l~~~~i~~~~~~~~-~~~~~lv~e~~~~~~   86 (262)
T cd05071          17 GCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMK---------KLRHEKLVQLYAVVS-EEPIYIVTEYMSKGS   86 (262)
T ss_pred             CCCCcEEEEEecCCceEEEEecccCccCHHHHHHHHHHHH---------hCCCCCcceEEEEEC-CCCcEEEEEcCCCCc
Confidence            45789999998877778887654        233444444         788999999987764 466799999999999


Q ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcc----cc
Q 044568           76 LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFV----ID  151 (257)
Q Consensus        76 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~----~~  151 (257)
                      |.+++.......+++..+..++.|++.||.|+|++   +++|+||+|.||++++++.++|+|||.+........    ..
T Consensus        87 L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~---~i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~~~~~~~~~  163 (262)
T cd05071          87 LLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGA  163 (262)
T ss_pred             HHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHC---CccccccCcccEEEcCCCcEEeccCCceeeccccccccccCC
Confidence            99999754455689999999999999999999999   999999999999999999999999999875433221    22


Q ss_pred             cCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHH
Q 044568          152 KRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNL  230 (257)
Q Consensus       152 ~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (257)
                      .++..|+|||...+..++.++|+||||+++||+++ |..||.......   ....          ..... ....+...+
T Consensus       164 ~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~~~~---~~~~----------~~~~~-~~~~~~~~~  229 (262)
T cd05071         164 KFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNRE---VLDQ----------VERGY-RMPCPPECP  229 (262)
T ss_pred             cccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCChHH---HHHH----------HhcCC-CCCCccccC
Confidence            34456999999988889999999999999999999 888886442111   0000          00000 012234456


Q ss_pred             HHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          231 ENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       231 ~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      +.+.+++.+||+.+|++|| +.+++++|
T Consensus       230 ~~l~~li~~~l~~~p~~Rp~~~~~~~~l  257 (262)
T cd05071         230 ESLHDLMCQCWRKEPEERPTFEYLQAFL  257 (262)
T ss_pred             HHHHHHHHHHccCCcccCCCHHHHHHHH
Confidence            7889999999999999999 99998865

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=100.00  E-value=1.7e-35  Score=249.17  Aligned_cols=238  Identities=16%  Similarity=0.170  Sum_probs=176.4

Q ss_pred             cccccceeeecccC------CCCCeeeccchhhhHHH-HhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCC
Q 044568            3 CTKLSNFYRSSFNA------RNSPWISRVSWTADIEV-LSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGS   75 (257)
Q Consensus         3 ~~~~~~~y~~~~~~------~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gs   75 (257)
                      .+.++.||+|+...      +..+++|.......-.. -.+.........+.|+|++++.+.+...+..++++||+++++
T Consensus        15 ~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~~~~e~~~~~~   94 (283)
T cd05091          15 EDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQPLSMIFSYCSHSD   94 (283)
T ss_pred             CCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCCceEEEEEcCCCCc
Confidence            35689999998654      34567777653211000 000000012237889999999999999999999999999999


Q ss_pred             HHHHHhcc--------------CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeeccc
Q 044568           76 LTDIIFCS--------------AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA  141 (257)
Q Consensus        76 L~~~l~~~--------------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~  141 (257)
                      |.+++...              ....+++..+..++.|++.||.|+|++   +++||||||.||++++++.+||+|||++
T Consensus        95 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~---gi~H~dlkp~Nil~~~~~~~kl~Dfg~~  171 (283)
T cd05091          95 LHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSH---HVVHKDLATRNVLVFDKLNVKISDLGLF  171 (283)
T ss_pred             HHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHc---CccccccchhheEecCCCceEecccccc
Confidence            99998521              123578888999999999999999999   9999999999999999999999999987


Q ss_pred             ccCCCCc-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhh
Q 044568          142 KLPNEDF-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRE  215 (257)
Q Consensus       142 ~~~~~~~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~  215 (257)
                      +......     ....+++.|+|||.+....++.++||||||+++|||++ |..||......       .+... .... 
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~-------~~~~~-i~~~-  242 (283)
T cd05091         172 REVYAADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQ-------DVIEM-IRNR-  242 (283)
T ss_pred             cccccchheeeccCccCCccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCCHH-------HHHHH-HHcC-
Confidence            7533221     12234567999999988889999999999999999998 88888644111       01000 0000 


Q ss_pred             hhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          216 LNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       216 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                           +....+..++..+.+++..||+.+|.+|| ++||++.|
T Consensus       243 -----~~~~~~~~~~~~~~~li~~cl~~~p~~RP~~~~i~~~l  280 (283)
T cd05091         243 -----QVLPCPDDCPAWVYTLMLECWNEFPSRRPRFKDIHSRL  280 (283)
T ss_pred             -----CcCCCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHHh
Confidence                 01123455677899999999999999999 99999865

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=100.00  E-value=3.4e-35  Score=244.38  Aligned_cols=227  Identities=21%  Similarity=0.314  Sum_probs=177.6

Q ss_pred             ccccceeeecccCCCCCeeeccc--------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS--------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGS   75 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gs   75 (257)
                      +.++.||++....+..+++|...        +.+|++++.         ++.|++++++.+... .+..++||||+++++
T Consensus        17 g~~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~E~~~l~---------~l~~~~i~~~~~~~~-~~~~~lv~e~~~~~~   86 (260)
T cd05070          17 GQFGEVWMGTWNGNTKVAVKTLKPGTMSPESFLEEAQIMK---------KLRHDKLVQLYAVVS-EEPIYIVTEYMSKGS   86 (260)
T ss_pred             ccCceEEEEEecCCceeEEEEecCCCCCHHHHHHHHHHHH---------hcCCCceEEEEeEEC-CCCcEEEEEecCCCc
Confidence            46789999998888888887654        234444444         889999999998774 566889999999999


Q ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc----ccc
Q 044568           76 LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF----VID  151 (257)
Q Consensus        76 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~----~~~  151 (257)
                      |.+++.+.....+++.++..++.|++.||.|||++   +++|+|++|+||++++++.++|+|||.+.......    ...
T Consensus        87 L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~  163 (260)
T cd05070          87 LLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERM---NYIHRDLRSANILVGDGLVCKIADFGLARLIEDNEYTARQGA  163 (260)
T ss_pred             HHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCccceEEEeCCceEEeCCceeeeeccCcccccccCC
Confidence            99999764456689999999999999999999999   99999999999999999999999999987543221    112


Q ss_pred             cCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHH
Q 044568          152 KRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNL  230 (257)
Q Consensus       152 ~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (257)
                      .++..|+|||.+....++.++|+||||+++||+++ |..||.......   ....          .... .....+...+
T Consensus       164 ~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~---~~~~----------~~~~-~~~~~~~~~~  229 (260)
T cd05070         164 KFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNNRE---VLEQ----------VERG-YRMPCPQDCP  229 (260)
T ss_pred             CCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCCCHHH---HHHH----------HHcC-CCCCCCCcCC
Confidence            23456999999988889999999999999999999 889996442111   1110          0000 0112334456


Q ss_pred             HHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          231 ENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       231 ~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ..+.+++.+||+.+|.+|| ++++.+.|
T Consensus       230 ~~~~~li~~~l~~~p~~Rpt~~~l~~~l  257 (260)
T cd05070         230 ISLHELMLQCWKKDPEERPTFEYLQSFL  257 (260)
T ss_pred             HHHHHHHHHHcccCcccCcCHHHHHHHH
Confidence            7899999999999999999 99998765

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=100.00  E-value=4.3e-36  Score=272.30  Aligned_cols=223  Identities=18%  Similarity=0.222  Sum_probs=179.3

Q ss_pred             ccccceeeecccCC-CCCeeeccc---------hhhhHHHHhHhhhcccccccc-CCceeeeceeeee-------cCcee
Q 044568            4 TKLSNFYRSSFNAR-NSPWISRVS---------WTADIEVLSVAMRGSKCTRIR-GGLLLNVPVRAKL-------TSVSG   65 (257)
Q Consensus         4 ~~~~~~y~~~~~~~-~~~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~-h~~i~~~~~~~~~-------~~~~~   65 (257)
                      ++||.||.++...+ ...++|+.-         ..+|++++.         .+. |+|||.+.+....       .-+++
T Consensus        48 GGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK---------~L~gh~nIV~yidss~~~~~~~~~~~Evl  118 (738)
T KOG1989|consen   48 GGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMK---------LLSGHKNIVSYIDSSAINRSSNNGVWEVL  118 (738)
T ss_pred             CCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHH---------HhcCCCceeeEeccccccccCCCceeEEE
Confidence            68999999999888 888888743         245555555         443 9999999993221       12667


Q ss_pred             EEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC
Q 044568           66 KIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN  145 (257)
Q Consensus        66 lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~  145 (257)
                      |.||||+||+|-|++......+|++.++++|+.|+++|+.+||.. .++|+|||||.+|+|+..++..||+|||-+....
T Consensus       119 lLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~~-~pPiIHRDLKiENvLls~~g~~KLCDFGSatt~~  197 (738)
T KOG1989|consen  119 LLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHYL-KPPIIHRDLKIENVLLSADGNYKLCDFGSATTKI  197 (738)
T ss_pred             eehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcC-CCccchhhhhhhheEEcCCCCEEeCccccccccc
Confidence            999999999999999865666799999999999999999999998 7789999999999999999999999999876322


Q ss_pred             CCc------------ccccCCCCccCccccc---CCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHh
Q 044568          146 EDF------------VIDKRDKGYMAPECYK---RTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKC  210 (257)
Q Consensus       146 ~~~------------~~~~~~~~~~aPE~~~---~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~  210 (257)
                      ...            -....|+.|++||++.   +.++++|+||||+||+||-++++..||+.....             
T Consensus       198 ~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg~l-------------  264 (738)
T KOG1989|consen  198 LSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESGKL-------------  264 (738)
T ss_pred             CCCccHHHHHHHHHHHHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCcce-------------
Confidence            211            2235678899999985   667899999999999999999999999744111             


Q ss_pred             hhhhhhhhhhcCC---CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHh
Q 044568          211 FINRELNKLVRGT---KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMM  256 (257)
Q Consensus       211 ~~~~~~~~~~~~~---~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~  256 (257)
                             .++.+.   +........+.+||..||+.||.+|| +-+++..
T Consensus       265 -------aIlng~Y~~P~~p~ys~~l~~LI~~mL~~nP~~RPnI~Qv~~~  307 (738)
T KOG1989|consen  265 -------AILNGNYSFPPFPNYSDRLKDLIRTMLQPNPDERPNIYQVLEE  307 (738)
T ss_pred             -------eEEeccccCCCCccHHHHHHHHHHHHhccCcccCCCHHHHHHH
Confidence                   223322   22346778999999999999999999 9988764

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=100.00  E-value=1.7e-35  Score=250.18  Aligned_cols=238  Identities=16%  Similarity=0.201  Sum_probs=174.3

Q ss_pred             ccccceeeeccc-CCCCCeeeccch----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +.++.||++... ++..+++|....          .+|++.+.         ++.|+|++++.+.+...+..++||||++
T Consensus        16 G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~---------~l~h~niv~~~~~~~~~~~~~lv~e~~~   86 (288)
T cd07871          16 GTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLK---------NLKHANIVTLHDIIHTERCLTLVFEYLD   86 (288)
T ss_pred             CCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHH---------hCCCCCEeeEEEEEcCCCeEEEEEeCCC
Confidence            567899999865 455667775432          24444444         8889999999999999999999999997


Q ss_pred             CCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC---Ccc
Q 044568           73 NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE---DFV  149 (257)
Q Consensus        73 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~---~~~  149 (257)
                       |+|.+++.. ....+++..+..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++.....   ...
T Consensus        87 -~~l~~~l~~-~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~~~~~~~~  161 (288)
T cd07871          87 -SDLKQYLDN-CGNLMSMHNVKIFMFQLLRGLSYCHKR---KILHRDLKPQNLLINEKGELKLADFGLARAKSVPTKTYS  161 (288)
T ss_pred             -cCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEECcCcceeeccCCCcccc
Confidence             499999874 445688999999999999999999999   999999999999999999999999999864322   123


Q ss_pred             cccCCCCccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHH-------HHhh-hhhhhhhhh
Q 044568          150 IDKRDKGYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWV-------YKCF-INRELNKLV  220 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~  220 (257)
                      ...++..|+|||.+.+ ..++.++|+||+|+++|||++|+.||................       ++.. ...+.....
T Consensus       162 ~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (288)
T cd07871         162 NEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGSTVKEELHLIFRLLGTPTEETWPGITSNEEFRSYL  241 (288)
T ss_pred             CceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhccccchhhhccc
Confidence            3456788999999875 458899999999999999999999997653221111110000       0000 000011100


Q ss_pred             cCC-------CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          221 RGT-------KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       221 ~~~-------~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      -+.       .........+.+++.+||+.||.+|| ++|+++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dp~~R~t~~~~l~  284 (288)
T cd07871         242 FPQYRAQPLINHAPRLDTDGIDLLSSLLLYETKSRISAEAALR  284 (288)
T ss_pred             cCccCCCchHHhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence            000       00111235678999999999999999 999975

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=100.00  E-value=2.5e-35  Score=254.19  Aligned_cols=178  Identities=20%  Similarity=0.238  Sum_probs=148.1

Q ss_pred             ccccceeeecccCCCCC-eeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSFNARNSP-WISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~-~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +.++.||+++...+... ++|...          +.+|++.+.         ++.|+|++++.+.+...+..++||||++
T Consensus        16 g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~~~~~~~lv~e~~~   86 (333)
T cd06650          16 GNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLH---------ECNSPYIVGFYGAFYSDGEISICMEHMD   86 (333)
T ss_pred             CCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHH---------HCCCCcccceeEEEEECCEEEEEEecCC
Confidence            46789999997755444 444322          234444444         7889999999999999999999999999


Q ss_pred             CCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC-Ccccc
Q 044568           73 NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE-DFVID  151 (257)
Q Consensus        73 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~-~~~~~  151 (257)
                      +|+|.+++.  ....+++..+..++.|++.|+.|||++.  +++|+||||+||+++.++.+||+|||++..... .....
T Consensus        87 ~~~L~~~l~--~~~~~~~~~~~~~~~~l~~~l~~lH~~~--~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~~~~  162 (333)
T cd06650          87 GGSLDQVLK--KAGRIPEQILGKVSIAVIKGLTYLREKH--KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSF  162 (333)
T ss_pred             CCcHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHhcC--CEEecCCChhhEEEcCCCCEEEeeCCcchhhhhhccccC
Confidence            999999997  4456889999999999999999999741  799999999999999999999999998864322 22344


Q ss_pred             cCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcC
Q 044568          152 KRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEID  194 (257)
Q Consensus       152 ~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~  194 (257)
                      .++..|+|||.+.+..++.++|+|||||++||+++|+.||...
T Consensus       163 ~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~  205 (333)
T cd06650         163 VGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPPP  205 (333)
T ss_pred             CCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc
Confidence            6788899999998888999999999999999999999999754

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=100.00  E-value=3.1e-35  Score=245.38  Aligned_cols=227  Identities=18%  Similarity=0.200  Sum_probs=175.6

Q ss_pred             ccccceeeecccCC----CCCeeeccch----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEe
Q 044568            4 TKLSNFYRSSFNAR----NSPWISRVSW----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIER   69 (257)
Q Consensus         4 ~~~~~~y~~~~~~~----~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E   69 (257)
                      +.++.||+|+...+    ..+++|....          .+|++.         +.++.|+|++++.+.+...+..++|||
T Consensus        15 g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~---------l~~l~h~~i~~~~~~~~~~~~~~iv~e   85 (266)
T cd05033          15 GEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASI---------MGQFDHPNIIRLEGVVTKSRPVMIITE   85 (266)
T ss_pred             CccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHH---------HHhCCCCCcceEeEEEecCCceEEEEE
Confidence            56889999987543    3446665431          223333         338889999999999999999999999


Q ss_pred             ecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-
Q 044568           70 PVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-  148 (257)
Q Consensus        70 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-  148 (257)
                      |+++++|.+++.. ....+++.++..++.|++.|+.|||++   +++|+|++|+||++++++.++++|||++....... 
T Consensus        86 ~~~~~~L~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~Lh~~---~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~  161 (266)
T cd05033          86 YMENGSLDKFLRE-NDGKFTVGQLVGMLRGIASGMKYLSEM---NYVHRDLAARNILVNSNLVCKVSDFGLSRRLEDSEA  161 (266)
T ss_pred             cCCCCCHHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCCEEECccchhhccccccc
Confidence            9999999999975 445789999999999999999999999   99999999999999999999999999987653111 


Q ss_pred             ----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC
Q 044568          149 ----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  223 (257)
Q Consensus       149 ----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (257)
                          ....++..|+|||.+.+..++.++|+||||+++||+++ |..||......    .....         ..... ..
T Consensus       162 ~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~~~----~~~~~---------~~~~~-~~  227 (266)
T cd05033         162 TYTTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDMSNQ----DVIKA---------VEDGY-RL  227 (266)
T ss_pred             ceeccCCCCCccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCCCCCHH----HHHHH---------HHcCC-CC
Confidence                11233456999999988889999999999999999998 99998543111    01010         00000 00


Q ss_pred             CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          224 KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       224 ~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      +.+...++.+.+++.+||+.+|++|| +.|+++.|
T Consensus       228 ~~~~~~~~~l~~li~~cl~~~p~~Rp~~~ei~~~l  262 (266)
T cd05033         228 PPPMDCPSALYQLMLDCWQKDRNERPTFSQIVSTL  262 (266)
T ss_pred             CCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHH
Confidence            12334567899999999999999999 99998864

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=1.2e-35  Score=255.13  Aligned_cols=225  Identities=15%  Similarity=0.129  Sum_probs=171.2

Q ss_pred             ccccceeeeccc----CCCCCeeeccchhhh----HHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCC
Q 044568            4 TKLSNFYRSSFN----ARNSPWISRVSWTAD----IEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGS   75 (257)
Q Consensus         4 ~~~~~~y~~~~~----~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gs   75 (257)
                      +.++.||+++..    .+..+++|.......    .........-..+..+.|+||+++.+.+...+..++||||+++|+
T Consensus         7 G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~   86 (323)
T cd05584           7 GGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILEYLSGGE   86 (323)
T ss_pred             cCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEeCCCCch
Confidence            568899998753    455667776542110    000000001113338889999999999999999999999999999


Q ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC---Cccccc
Q 044568           76 LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE---DFVIDK  152 (257)
Q Consensus        76 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~---~~~~~~  152 (257)
                      |.+++.  ....+++..+..++.|++.||.|||++   +++||||||+||+++.++.+||+|||+++....   ......
T Consensus        87 L~~~~~--~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~  161 (323)
T cd05584          87 LFMHLE--REGIFMEDTACFYLSEISLALEHLHQQ---GIIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGTVTHTFC  161 (323)
T ss_pred             HHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCCEEEeeCcCCeecccCCCcccccC
Confidence            999997  456688899999999999999999999   999999999999999999999999998763221   123346


Q ss_pred             CCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC-CCCHHHHH
Q 044568          153 RDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT-KVDKKNLE  231 (257)
Q Consensus       153 ~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  231 (257)
                      +++.|+|||.+.+..++.++||||||+++|||++|+.||.......   .             ........ ..+....+
T Consensus       162 gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~~~~~---~-------------~~~~~~~~~~~~~~~~~  225 (323)
T cd05584         162 GTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAENRKK---T-------------IDKILKGKLNLPPYLTP  225 (323)
T ss_pred             CCccccChhhccCCCCCCcceecccHHHHHHHhcCCCCCCCCCHHH---H-------------HHHHHcCCCCCCCCCCH
Confidence            7889999999998888999999999999999999999997542110   0             11111111 23334456


Q ss_pred             HHHHHHHHcccCCCCCCC
Q 044568          232 NLVKVGLWCVQDEPALRP  249 (257)
Q Consensus       232 ~l~~l~~~cl~~~p~~RP  249 (257)
                      .+.+++.+||+.||++||
T Consensus       226 ~~~~li~~~l~~~p~~R~  243 (323)
T cd05584         226 EARDLLKKLLKRNPSSRL  243 (323)
T ss_pred             HHHHHHHHHcccCHhHcC
Confidence            789999999999999998

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=2.1e-35  Score=254.59  Aligned_cols=237  Identities=16%  Similarity=0.185  Sum_probs=171.2

Q ss_pred             ccccceeeeccc-CCCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeec-----CceeE
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT-----SVSGK   66 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~-----~~~~l   66 (257)
                      +.++.||++... ++..+++|...           +.+|++.+.         +++|+|++++.+++...     ...++
T Consensus        11 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~---------~l~hpniv~~~~~~~~~~~~~~~~~~l   81 (338)
T cd07859          11 GSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLR---------LLRHPDIVEIKHIMLPPSRREFKDIYV   81 (338)
T ss_pred             cCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHH---------hCCCCCEeeecceEeccCCCCCceEEE
Confidence            568899999855 56677787653           223444443         88899999999877543     24799


Q ss_pred             EEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC
Q 044568           67 IERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE  146 (257)
Q Consensus        67 V~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~  146 (257)
                      |||||+ ++|.+++.  ....+++..+..++.|++.||.|||++   +++||||||+||+++.++.+||+|||+++....
T Consensus        82 v~e~~~-~~L~~~l~--~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~~~  155 (338)
T cd07859          82 VFELME-SDLHQVIK--ANDDLTPEHHQFFLYQLLRALKYIHTA---NVFHRDLKPKNILANADCKLKICDFGLARVAFN  155 (338)
T ss_pred             EEecCC-CCHHHHHH--hcccCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCcEEEccCcccccccc
Confidence            999995 69999987  455799999999999999999999999   999999999999999999999999999874321


Q ss_pred             Cc------ccccCCCCccCcccccC--CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHH-------HHhh
Q 044568          147 DF------VIDKRDKGYMAPECYKR--TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWV-------YKCF  211 (257)
Q Consensus       147 ~~------~~~~~~~~~~aPE~~~~--~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~-------~~~~  211 (257)
                      ..      ....++..|+|||.+.+  ..++.++|||||||++|||++|+.||................       ....
T Consensus       156 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i  235 (338)
T cd07859         156 DTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLITDLLGTPSPETISRV  235 (338)
T ss_pred             ccCccccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHh
Confidence            11      23467888999999865  568899999999999999999999997542211000000000       0000


Q ss_pred             hhhh----hhhhhcCCCCC-----HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          212 INRE----LNKLVRGTKVD-----KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       212 ~~~~----~~~~~~~~~~~-----~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ....    ...+......+     ....+.+.+++.+||+.||++|| ++|+++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~e~l~  289 (338)
T cd07859         236 RNEKARRYLSSMRKKQPVPFSQKFPNADPLALRLLERLLAFDPKDRPTAEEALA  289 (338)
T ss_pred             hhhhHHHHHHhhcccCCCchHHhcCCCChHHHHHHHHHcCcCcccCCCHHHHhc
Confidence            0000    00111111110     11245678999999999999999 999975

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=100.00  E-value=1.5e-35  Score=254.09  Aligned_cols=231  Identities=16%  Similarity=0.136  Sum_probs=174.8

Q ss_pred             cccccceeeecccCC-CCCeeeccchhh-----hHHHHhHhhhccccccc-cCCceeeeceeeeecCceeEEEeecCCCC
Q 044568            3 CTKLSNFYRSSFNAR-NSPWISRVSWTA-----DIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVSGKIERPVRNGS   75 (257)
Q Consensus         3 ~~~~~~~y~~~~~~~-~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~~lV~E~~~~gs   75 (257)
                      .+.++.||++....+ ..+++|......     ..+.......  .+..+ .|+|++++.+.+...+..++||||+++|+
T Consensus         5 ~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~--il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   82 (318)
T cd05570           5 KGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKR--VLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNGGD   82 (318)
T ss_pred             eCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHH--HHHhccCCCCccceeeEEEcCCEEEEEEcCCCCCC
Confidence            357899999987654 456777554211     1111100000  11122 69999999999999999999999999999


Q ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC---CCccccc
Q 044568           76 LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN---EDFVIDK  152 (257)
Q Consensus        76 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~---~~~~~~~  152 (257)
                      |.+++.  ....+++.++..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||+++...   .......
T Consensus        83 L~~~~~--~~~~l~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~  157 (318)
T cd05570          83 LMFHIQ--RSGRFDEPRARFYAAEIVLGLQFLHER---GIIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGVTTSTFC  157 (318)
T ss_pred             HHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEccCCCHHHeEECCCCcEEecccCCCeecCcCCCccccee
Confidence            999997  445799999999999999999999999   99999999999999999999999999876421   1223345


Q ss_pred             CCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHH
Q 044568          153 RDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLEN  232 (257)
Q Consensus       153 ~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (257)
                      ++..|+|||.+.+..++.++|+|||||++|+|++|+.||.....   .......     ..       .....+...+..
T Consensus       158 g~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~~~~---~~~~~~i-----~~-------~~~~~~~~~~~~  222 (318)
T cd05570         158 GTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGDDE---DELFQSI-----LE-------DEVRYPRWLSKE  222 (318)
T ss_pred             cCccccCHHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCCCCH---HHHHHHH-----Hc-------CCCCCCCcCCHH
Confidence            78899999999998999999999999999999999999975421   1100000     00       011233345577


Q ss_pred             HHHHHHHcccCCCCCCC-h-----HHHHH
Q 044568          233 LVKVGLWCVQDEPALRP-M-----KCAVM  255 (257)
Q Consensus       233 l~~l~~~cl~~~p~~RP-~-----~ei~~  255 (257)
                      +.+++.+||+.||.+|| +     .++++
T Consensus       223 ~~~li~~~l~~dP~~R~s~~~~~~~~ll~  251 (318)
T cd05570         223 AKSILKSFLTKNPEKRLGCLPTGEQDIKG  251 (318)
T ss_pred             HHHHHHHHccCCHHHcCCCCCCCHHHHhc
Confidence            89999999999999999 8     77754

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=100.00  E-value=1.6e-35  Score=253.64  Aligned_cols=230  Identities=15%  Similarity=0.146  Sum_probs=173.9

Q ss_pred             ccccceeeecccC-CCCCeeeccchh-----hhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHH
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSWT-----ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLT   77 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~   77 (257)
                      +.++.||+++... ++.+++|...-.     ...+.... ..........|++++++.+.+...+..++||||+++|+|.
T Consensus         6 G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~-e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~g~L~   84 (316)
T cd05620           6 GSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMV-EKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLNGGDLM   84 (316)
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHH-HHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCCCCcHH
Confidence            5689999999765 455677765421     11111110 0000111347999999999999999999999999999999


Q ss_pred             HHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccC---CCCcccccCC
Q 044568           78 DIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLP---NEDFVIDKRD  154 (257)
Q Consensus        78 ~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~---~~~~~~~~~~  154 (257)
                      +++.  ....+++.++..++.|++.||.|||++   +++||||||+||+++.++.++|+|||++...   ........++
T Consensus        85 ~~i~--~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt  159 (316)
T cd05620          85 FHIQ--DKGRFDLYRATFYAAEIVCGLQFLHSK---GIIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDNRASTFCGT  159 (316)
T ss_pred             HHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEECCCCCEEeCccCCCeecccCCCceeccCCC
Confidence            9997  456789999999999999999999999   9999999999999999999999999987632   1222445678


Q ss_pred             CCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHH
Q 044568          155 KGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLV  234 (257)
Q Consensus       155 ~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  234 (257)
                      ..|+|||.+.+..++.++||||+|+++|||++|+.||......   ......          .  ......+......+.
T Consensus       160 ~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~~~~~---~~~~~~----------~--~~~~~~~~~~~~~~~  224 (316)
T cd05620         160 PDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDDED---ELFESI----------R--VDTPHYPRWITKESK  224 (316)
T ss_pred             cCccCHHHHcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHH---HHHHHH----------H--hCCCCCCCCCCHHHH
Confidence            9999999999889999999999999999999999999754211   111100          0  011122333456788


Q ss_pred             HHHHHcccCCCCCCC-hH-HHH
Q 044568          235 KVGLWCVQDEPALRP-MK-CAV  254 (257)
Q Consensus       235 ~l~~~cl~~~p~~RP-~~-ei~  254 (257)
                      +++.+||+.||++|| +. ++.
T Consensus       225 ~li~~~l~~dP~~R~~~~~~~~  246 (316)
T cd05620         225 DILEKLFERDPTRRLGVVGNIR  246 (316)
T ss_pred             HHHHHHccCCHHHcCCChHHHH
Confidence            999999999999999 74 554

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=100.00  E-value=3e-35  Score=248.88  Aligned_cols=228  Identities=16%  Similarity=0.222  Sum_probs=174.3

Q ss_pred             ccccceeeecccC------CCCCeeeccc---------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEE
Q 044568            4 TKLSNFYRSSFNA------RNSPWISRVS---------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIE   68 (257)
Q Consensus         4 ~~~~~~y~~~~~~------~~~~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~   68 (257)
                      +.++.||+++...      +..+++|...         +.+|++.+.         ++.|+|++++.+.+...+..++||
T Consensus        16 g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~---------~l~h~~i~~~~~~~~~~~~~~lv~   86 (291)
T cd05094          16 GAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLT---------NLQHEHIVKFYGVCGDGDPLIMVF   86 (291)
T ss_pred             cCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHh---------cCCCCCcceEEEEEccCCceEEEE
Confidence            4578899987432      2234555533         233444434         889999999999999999999999


Q ss_pred             eecCCCCHHHHHhccC--------------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceE
Q 044568           69 RPVRNGSLTDIIFCSA--------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAK  134 (257)
Q Consensus        69 E~~~~gsL~~~l~~~~--------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~k  134 (257)
                      ||+++++|.+++....              ...+++..+..++.|++.|+.|||++   +++|+||+|+||+++.++.++
T Consensus        87 e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~i~H~dlkp~Nil~~~~~~~~  163 (291)
T cd05094          87 EYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQ---HFVHRDLATRNCLVGANLLVK  163 (291)
T ss_pred             ecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccCcceEEEccCCcEE
Confidence            9999999999997422              23488999999999999999999999   999999999999999999999


Q ss_pred             EeeecccccCCCCc-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHH
Q 044568          135 ILDFGLAKLPNEDF-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVY  208 (257)
Q Consensus       135 l~dfg~~~~~~~~~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~  208 (257)
                      |+|||++.......     ....++..|+|||.+.+..++.++||||||+++|||++ |..||.......   ....   
T Consensus       164 l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~---~~~~---  237 (291)
T cd05094         164 IGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNTE---VIEC---  237 (291)
T ss_pred             ECCCCcccccCCCceeecCCCCCcceeecChHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH---HHHH---
Confidence            99999986433221     22234567999999988889999999999999999999 999986442110   1100   


Q ss_pred             HhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          209 KCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                        ......      ...+...+..+.+++.+||+.+|++|| +.+++++|
T Consensus       238 --~~~~~~------~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~v~~~l  279 (291)
T cd05094         238 --ITQGRV------LERPRVCPKEVYDIMLGCWQREPQQRLNIKEIYKIL  279 (291)
T ss_pred             --HhCCCC------CCCCccCCHHHHHHHHHHcccChhhCcCHHHHHHHH
Confidence              000000      012233456789999999999999999 99998865

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=100.00  E-value=1.9e-35  Score=256.92  Aligned_cols=223  Identities=18%  Similarity=0.209  Sum_probs=170.2

Q ss_pred             ccccceeeeccc-CCCCCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +.++.||+++.. +++.+++|...          +.+|++.+.         ++.|+||+++.+.+...+..++||||++
T Consensus        85 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~~~~~~~lv~e~~~  155 (353)
T PLN00034         85 GAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILR---------DVNHPNVVKCHDMFDHNGEIQVLLEFMD  155 (353)
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHH---------hCCCCCcceeeeEeccCCeEEEEEecCC
Confidence            578999999865 45667777642          233444444         7889999999999999999999999999


Q ss_pred             CCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---cc
Q 044568           73 NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---FV  149 (257)
Q Consensus        73 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~~  149 (257)
                      +|+|.+..      ..++.....++.|++.||.|||++   +++|||||++||+++.++.+||+|||++......   ..
T Consensus       156 ~~~L~~~~------~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~  226 (353)
T PLN00034        156 GGSLEGTH------IADEQFLADVARQILSGIAYLHRR---HIVHRDIKPSNLLINSAKNVKIADFGVSRILAQTMDPCN  226 (353)
T ss_pred             CCcccccc------cCCHHHHHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEcCCCCEEEcccccceeccccccccc
Confidence            99986543      345677888999999999999999   9999999999999999999999999998754332   23


Q ss_pred             cccCCCCccCcccccCC-----CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCC
Q 044568          150 IDKRDKGYMAPECYKRT-----PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTK  224 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~~-----~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (257)
                      ...++..|+|||.+...     ..+.++|||||||++|||++|+.||...............           .......
T Consensus       227 ~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~~-----------~~~~~~~  295 (353)
T PLN00034        227 SSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFGVGRQGDWASLMCAI-----------CMSQPPE  295 (353)
T ss_pred             ccccCccccCccccccccccCcCCCcchhHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHH-----------hccCCCC
Confidence            45678899999987532     2346899999999999999999999743221111000000           0001112


Q ss_pred             CCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          225 VDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       225 ~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .+......+.+++.+||+.||++|| +.|+++
T Consensus       296 ~~~~~~~~l~~li~~~l~~~P~~Rpt~~ell~  327 (353)
T PLN00034        296 APATASREFRHFISCCLQREPAKRWSAMQLLQ  327 (353)
T ss_pred             CCCccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            2334557799999999999999999 999986

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.1e-35  Score=248.21  Aligned_cols=225  Identities=19%  Similarity=0.241  Sum_probs=175.3

Q ss_pred             ccccceeeeccc-CCCCCeeeccch------------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||++... +++.+++|...-            .+|++.+         .++.|+|++.+.+.+...+..++||||
T Consensus        11 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l---------~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (285)
T cd05605          11 GGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQIL---------EKVNSRFVVSLAYAYETKDALCLVLTL   81 (285)
T ss_pred             CCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHH---------HhcCCCCEeeeeeeecCCCeEEEEEec
Confidence            467899999865 456677775531            2233333         388899999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC--c
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED--F  148 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~--~  148 (257)
                      +++|+|.+++.......+++..+..++.|++.|+.|||++   +++|+||+|+||++++++.++|+|||++......  .
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~  158 (285)
T cd05605          82 MNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRE---RIVYRDLKPENILLDDYGHIRISDLGLAVEIPEGETI  158 (285)
T ss_pred             cCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHHC---CcEecCCCHHHEEECCCCCEEEeeCCCceecCCCCcc
Confidence            9999999998754456799999999999999999999999   9999999999999999999999999998754322  1


Q ss_pred             ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHH
Q 044568          149 VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKK  228 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (257)
                      ....++..|+|||.+.+..++.++||||+|+++||+++|..||........   .....      .....  .....+..
T Consensus       159 ~~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~~~~~---~~~~~------~~~~~--~~~~~~~~  227 (285)
T cd05605         159 RGRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEKVK---REEVE------RRVKE--DQEEYSEK  227 (285)
T ss_pred             ccccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCCCCCchhhH---HHHHH------HHhhh--cccccCcc
Confidence            334678899999999888899999999999999999999999975422111   00000      00000  01123334


Q ss_pred             HHHHHHHHHHHcccCCCCCCC-hH
Q 044568          229 NLENLVKVGLWCVQDEPALRP-MK  251 (257)
Q Consensus       229 ~~~~l~~l~~~cl~~~p~~RP-~~  251 (257)
                      .+..+.+++.+||+.||++|| +.
T Consensus       228 ~~~~~~~li~~~l~~~P~~R~~~~  251 (285)
T cd05605         228 FSEAARSICRQLLTKDPGFRLGCR  251 (285)
T ss_pred             cCHHHHHHHHHHccCCHHHhcCCC
Confidence            566789999999999999999 55

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=100.00  E-value=2.5e-35  Score=252.52  Aligned_cols=230  Identities=17%  Similarity=0.144  Sum_probs=173.9

Q ss_pred             ccccceeeecccCC-CCCeeeccchh-----hhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHH
Q 044568            4 TKLSNFYRSSFNAR-NSPWISRVSWT-----ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLT   77 (257)
Q Consensus         4 ~~~~~~y~~~~~~~-~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~   77 (257)
                      +.++.||++....+ ..+++|...-.     ...+.... ..........|+|++++.+.+...+..++||||+++|+|.
T Consensus         6 G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~-e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~g~L~   84 (316)
T cd05619           6 GSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMV-EKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNGGDLM   84 (316)
T ss_pred             CCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHH-HHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCCCcHH
Confidence            56899999997654 45777765421     11111110 0000111357999999999999999999999999999999


Q ss_pred             HHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC---CCcccccCC
Q 044568           78 DIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN---EDFVIDKRD  154 (257)
Q Consensus        78 ~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~---~~~~~~~~~  154 (257)
                      +++.  ....+++.++..++.|++.||.|||++   +++||||||+||+++.++.++|+|||++....   .......+|
T Consensus        85 ~~l~--~~~~~~~~~~~~~~~qi~~al~~LH~~---~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt  159 (316)
T cd05619          85 FHIQ--SCHKFDLPRATFYAAEIICGLQFLHSK---GIVYRDLKLDNILLDTDGHIKIADFGMCKENMLGDAKTCTFCGT  159 (316)
T ss_pred             HHHH--HcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEeCCCCHHHEEECCCCCEEEccCCcceECCCCCCceeeecCC
Confidence            9997  446789999999999999999999999   99999999999999999999999999876421   222345678


Q ss_pred             CCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHH
Q 044568          155 KGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLV  234 (257)
Q Consensus       155 ~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  234 (257)
                      ..|+|||.+.+..++.++|+|||||++|||++|+.||.....   .......        ..    .....+......+.
T Consensus       160 ~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~---~~~~~~i--------~~----~~~~~~~~~~~~~~  224 (316)
T cd05619         160 PDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHDE---EELFQSI--------RM----DNPCYPRWLTREAK  224 (316)
T ss_pred             ccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCCCH---HHHHHHH--------Hh----CCCCCCccCCHHHH
Confidence            899999999988899999999999999999999999975421   1111110        00    01112233446688


Q ss_pred             HHHHHcccCCCCCCC-hH-HHH
Q 044568          235 KVGLWCVQDEPALRP-MK-CAV  254 (257)
Q Consensus       235 ~l~~~cl~~~p~~RP-~~-ei~  254 (257)
                      +++.+||+.||++|| +. ++.
T Consensus       225 ~li~~~l~~~P~~R~~~~~~l~  246 (316)
T cd05619         225 DILVKLFVREPERRLGVKGDIR  246 (316)
T ss_pred             HHHHHHhccCHhhcCCChHHHH
Confidence            999999999999999 76 654

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=100.00  E-value=1.9e-35  Score=254.51  Aligned_cols=233  Identities=15%  Similarity=0.187  Sum_probs=172.6

Q ss_pred             ccccceeeecccCCC-CCeeeccchh-----hhHHHHhHhhhcccccc-ccCCceeeeceeeeecCceeEEEeecCCCCH
Q 044568            4 TKLSNFYRSSFNARN-SPWISRVSWT-----ADIEVLSVAMRGSKCTR-IRGGLLLNVPVRAKLTSVSGKIERPVRNGSL   76 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~-~~~i~~~~~~-----~~~~~~~~~~~~~~~~~-~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL   76 (257)
                      +.++.||+++...++ .+++|...-.     ...+.+..  ....+.+ ..|+|++++.+.+...+..++||||+++|+|
T Consensus         6 G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~--E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~~~~L   83 (329)
T cd05618           6 GSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQT--EKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDL   83 (329)
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHH--HHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCCCCCH
Confidence            568999999976554 4566654321     11111110  0001112 3699999999999999999999999999999


Q ss_pred             HHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC---CCcccccC
Q 044568           77 TDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN---EDFVIDKR  153 (257)
Q Consensus        77 ~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~---~~~~~~~~  153 (257)
                      .+++.  ....+++..+..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++....   .......+
T Consensus        84 ~~~~~--~~~~l~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~~~~~~~~~~g  158 (329)
T cd05618          84 MFHMQ--RQRKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCG  158 (329)
T ss_pred             HHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEECCCCCEEEeeCCccccccCCCCccccccC
Confidence            99987  456799999999999999999999999   99999999999999999999999999886422   22234567


Q ss_pred             CCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChh-hHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHH
Q 044568          154 DKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPE-EIILTNWVYKCFINRELNKLVRGTKVDKKNLEN  232 (257)
Q Consensus       154 ~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (257)
                      |..|+|||++.+..++.++|+||||+++|||++|+.||........ ......+.......       .....+......
T Consensus       159 t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~i~~-------~~~~~p~~~~~~  231 (329)
T cd05618         159 TPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILE-------KQIRIPRSLSVK  231 (329)
T ss_pred             CccccCHHHHcCCCCCCccceecccHHHHHHhhCCCCCccCCCcCCcccccHHHHHHHHhc-------CCCCCCCCCCHH
Confidence            8899999999988899999999999999999999999964221111 01111111111100       111334455677


Q ss_pred             HHHHHHHcccCCCCCCC-h
Q 044568          233 LVKVGLWCVQDEPALRP-M  250 (257)
Q Consensus       233 l~~l~~~cl~~~p~~RP-~  250 (257)
                      +.+++.+||+.||++|| +
T Consensus       232 ~~~ll~~~L~~dP~~R~~~  250 (329)
T cd05618         232 AASVLKSFLNKDPKERLGC  250 (329)
T ss_pred             HHHHHHHHhcCCHHHcCCC
Confidence            88999999999999999 6

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>PHA03212 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=4.4e-35  Score=257.73  Aligned_cols=238  Identities=18%  Similarity=0.170  Sum_probs=178.1

Q ss_pred             cccccceeeecccC-CCCCeeeccc---hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHH
Q 044568            3 CTKLSNFYRSSFNA-RNSPWISRVS---WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTD   78 (257)
Q Consensus         3 ~~~~~~~y~~~~~~-~~~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~   78 (257)
                      .+.++.||++.... ++.+++|...   +.+|++++.         ++.|+||+++.+.+...+..++|+|++. ++|.+
T Consensus       102 ~G~~g~V~~~~d~~~~~~vaiK~~~~~~~~~E~~il~---------~l~HpnIv~~~~~~~~~~~~~lv~e~~~-~~L~~  171 (391)
T PHA03212        102 PGAEGFAFACIDNKTCEHVVIKAGQRGGTATEAHILR---------AINHPSIIQLKGTFTYNKFTCLILPRYK-TDLYC  171 (391)
T ss_pred             CCCCeEEEEEEECCCCCEEEEechhhhhhHHHHHHHH---------hCCCCCCCCEeEEEEECCeeEEEEecCC-CCHHH
Confidence            36788999998654 4556777644   356777766         8899999999999999999999999995 68999


Q ss_pred             HHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC----CcccccCC
Q 044568           79 IIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE----DFVIDKRD  154 (257)
Q Consensus        79 ~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~----~~~~~~~~  154 (257)
                      ++.  ....+++.+++.++.|++.||.|||++   +|+||||||+||+++.++.++|+|||++.....    ......+|
T Consensus       172 ~l~--~~~~l~~~~~~~i~~qi~~aL~ylH~~---~IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~~~~~~~~~~~~gt  246 (391)
T PHA03212        172 YLA--AKRNIAICDILAIERSVLRAIQYLHEN---RIIHRDIKAENIFINHPGDVCLGDFGAACFPVDINANKYYGWAGT  246 (391)
T ss_pred             HHH--hcCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChHhEEEcCCCCEEEEeCCcccccccccccccccccCc
Confidence            886  446789999999999999999999999   999999999999999999999999999864322    12344688


Q ss_pred             CCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCCh----hhHHHHHHHHHhh---------hhhhhh----
Q 044568          155 KGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKP----EEIILTNWVYKCF---------INRELN----  217 (257)
Q Consensus       155 ~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~----~~~~~~~~~~~~~---------~~~~~~----  217 (257)
                      +.|+|||++.+..++.++|||||||++|||++|..||.......    ....+........         ......    
T Consensus       247 ~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~p~~~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  326 (391)
T PHA03212        247 IATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDSLFEKDGLDGDCDSDRQIKLIIRRSGTHPNEFPIDAQANLDEIYI  326 (391)
T ss_pred             cCCCChhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCcCCcccccccCchhHHHHHHHHHhcCChhhcCcchhHHHHHHHH
Confidence            99999999998889999999999999999999998875432111    0011111100000         000000    


Q ss_pred             hhhc-----CC--CC---CHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          218 KLVR-----GT--KV---DKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       218 ~~~~-----~~--~~---~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ....     +.  ..   ....+..+.+++.+||+.||++|| ++|+++
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~mL~~dP~~Rpta~elL~  375 (391)
T PHA03212        327 GLAKKSSRKPGSRPLWTNLYELPIDLEYLICKMLAFDAHHRPSAEALLD  375 (391)
T ss_pred             HHHhccCCCCCCCCCHHHHhhhhhhHHHHHHHHhcCChhhCCCHHHHhc
Confidence            0000     00  00   112356789999999999999999 999975

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-36  Score=264.29  Aligned_cols=225  Identities=17%  Similarity=0.206  Sum_probs=184.2

Q ss_pred             ccccceeeecccCCCCC-eeeccc--------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCC
Q 044568            4 TKLSNFYRSSFNARNSP-WISRVS--------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNG   74 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~-~i~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~g   74 (257)
                      ++.++||.|-+..-.-. ++|.+.        |..|..++.         .+.|+|+|++.|.|..+..+|||+|||.+|
T Consensus       278 GQYGeVYeGvWKkyslTvAVKtLKEDtMeveEFLkEAAvMK---------eikHpNLVqLLGVCT~EpPFYIiTEfM~yG  348 (1157)
T KOG4278|consen  278 GQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMK---------EIKHPNLVQLLGVCTHEPPFYIITEFMCYG  348 (1157)
T ss_pred             CcccceeeeeeeccceeeehhhhhhcchhHHHHHHHHHHHH---------hhcCccHHHHhhhhccCCCeEEEEecccCc
Confidence            45688999987765443 444432        455555555         899999999999999999999999999999


Q ss_pred             CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-ccccC
Q 044568           75 SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-VIDKR  153 (257)
Q Consensus        75 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-~~~~~  153 (257)
                      +|.++|++....-++....+.++.||.+|+.||..+   +++||||.++|+|++++..+|++|||+++.+..+. +...|
T Consensus       349 NLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLEkk---nFIHRDLAARNCLVgEnhiVKvADFGLsRlMtgDTYTAHAG  425 (1157)
T KOG4278|consen  349 NLLDYLRECNRSEVPAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHIVKVADFGLSRLMTGDTYTAHAG  425 (1157)
T ss_pred             cHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHHHh---hhhhhhhhhhhccccccceEEeeccchhhhhcCCceecccC
Confidence            999999986667778788889999999999999999   99999999999999999999999999999765544 33333


Q ss_pred             C---CCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC---CCC
Q 044568          154 D---KGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT---KVD  226 (257)
Q Consensus       154 ~---~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  226 (257)
                      .   .-|.|||.+..+.++.|+|||+||++|||+.| |-.||.+.+-                 .+.-.++...   .-+
T Consensus       426 AKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPGidl-----------------SqVY~LLEkgyRM~~P  488 (1157)
T KOG4278|consen  426 AKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGIDL-----------------SQVYGLLEKGYRMDGP  488 (1157)
T ss_pred             ccCcccccCcccccccccccchhhHHHHHHHHHHHhcCCCCCCCccH-----------------HHHHHHHhccccccCC
Confidence            2   34999999999999999999999999999999 7788865421                 1111222221   446


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          227 KKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       227 ~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ..|++.+.+|++.||+.+|.+|| ++||.+.+
T Consensus       489 eGCPpkVYeLMraCW~WsPsDRPsFaeiHqaf  520 (1157)
T KOG4278|consen  489 EGCPPKVYELMRACWNWSPSDRPSFAEIHQAF  520 (1157)
T ss_pred             CCCCHHHHHHHHHHhcCCcccCccHHHHHHHH
Confidence            67889999999999999999999 99998753

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=100.00  E-value=3.5e-35  Score=252.32  Aligned_cols=224  Identities=17%  Similarity=0.178  Sum_probs=169.3

Q ss_pred             ccccceeeecccCC-CCCeeeccchh-----hhHHHHhHhhhccccccccC-CceeeeceeeeecCceeEEEeecCCCCH
Q 044568            4 TKLSNFYRSSFNAR-NSPWISRVSWT-----ADIEVLSVAMRGSKCTRIRG-GLLLNVPVRAKLTSVSGKIERPVRNGSL   76 (257)
Q Consensus         4 ~~~~~~y~~~~~~~-~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~h-~~i~~~~~~~~~~~~~~lV~E~~~~gsL   76 (257)
                      +.++.||+++...+ ..+++|.....     ...+...  .....+..+.| .+++.+...+...+..++||||+++|+|
T Consensus        11 G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~--~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~g~L   88 (324)
T cd05587          11 GSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTM--VEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDL   88 (324)
T ss_pred             ccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHH--HHHHHHHhcCCCCceeeeEEEEEcCCEEEEEEcCCCCCcH
Confidence            67899999987654 45777765421     1111110  00111224445 4577888888888999999999999999


Q ss_pred             HHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccC---CCCcccccC
Q 044568           77 TDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLP---NEDFVIDKR  153 (257)
Q Consensus        77 ~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~---~~~~~~~~~  153 (257)
                      .+++.  ....+++.++..++.|++.||.|||++   +++||||||+||+++.++.++|+|||++...   ........+
T Consensus        89 ~~~~~--~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~g  163 (324)
T cd05587          89 MYHIQ--QVGKFKEPHAVFYAAEIAIGLFFLHSK---GIIYRDLKLDNVMLDAEGHIKIADFGMCKENIFGGKTTRTFCG  163 (324)
T ss_pred             HHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEEcCCCCEEEeecCcceecCCCCCceeeecC
Confidence            99997  456789999999999999999999999   9999999999999999999999999987632   122234568


Q ss_pred             CCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc-CCCCCHHHHHH
Q 044568          154 DKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR-GTKVDKKNLEN  232 (257)
Q Consensus       154 ~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  232 (257)
                      |+.|+|||++.+..++.++|+||+||++|||++|+.||......   .....             ... ....+....+.
T Consensus       164 t~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~---~~~~~-------------i~~~~~~~~~~~~~~  227 (324)
T cd05587         164 TPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDED---ELFQS-------------IMEHNVSYPKSLSKE  227 (324)
T ss_pred             CccccChhhhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHH---HHHHH-------------HHcCCCCCCCCCCHH
Confidence            89999999999988999999999999999999999999754211   11110             111 11223344567


Q ss_pred             HHHHHHHcccCCCCCCC-h
Q 044568          233 LVKVGLWCVQDEPALRP-M  250 (257)
Q Consensus       233 l~~l~~~cl~~~p~~RP-~  250 (257)
                      +.+++.+||+.||.+|| .
T Consensus       228 ~~~li~~~l~~~P~~R~~~  246 (324)
T cd05587         228 AVSICKGLLTKHPAKRLGC  246 (324)
T ss_pred             HHHHHHHHhhcCHHHcCCC
Confidence            88999999999999999 6

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=100.00  E-value=2.2e-35  Score=254.13  Aligned_cols=235  Identities=14%  Similarity=0.177  Sum_probs=172.6

Q ss_pred             ccccceeeecccC-CCCCeeeccchh--hhHHHHh-Hhhhccccccc-cCCceeeeceeeeecCceeEEEeecCCCCHHH
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSWT--ADIEVLS-VAMRGSKCTRI-RGGLLLNVPVRAKLTSVSGKIERPVRNGSLTD   78 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~~--~~~~~~~-~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~   78 (257)
                      +.++.||+++... +..+++|...-.  ...+... +......+..+ .|+||+++.+.+...+..++||||+++|+|.+
T Consensus         6 G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~g~L~~   85 (329)
T cd05588           6 GSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSGGDLMF   85 (329)
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCCCCHHH
Confidence            5689999998765 445667655421  1111000 01111111133 69999999999999999999999999999999


Q ss_pred             HHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccC---CCCcccccCCC
Q 044568           79 IIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLP---NEDFVIDKRDK  155 (257)
Q Consensus        79 ~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~---~~~~~~~~~~~  155 (257)
                      ++.  ....+++..+..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++...   ........||+
T Consensus        86 ~~~--~~~~l~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~  160 (329)
T cd05588          86 HMQ--RQRKLPEEHARFYSAEISLALNFLHER---GIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPGDTTSTFCGTP  160 (329)
T ss_pred             HHH--HcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEECCCCCEEECcCccccccccCCCccccccCCc
Confidence            987  446799999999999999999999999   9999999999999999999999999988642   22223456888


Q ss_pred             CccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChh-hHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHH
Q 044568          156 GYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPE-EIILTNWVYKCFINRELNKLVRGTKVDKKNLENLV  234 (257)
Q Consensus       156 ~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  234 (257)
                      .|+|||.+.+..++.++|+||||+++||+++|+.||........ ......+.......       .....+......+.
T Consensus       161 ~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~p~~~~~~~~  233 (329)
T cd05588         161 NYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQNTEDYLFQVILE-------KQIRIPRSLSVKAS  233 (329)
T ss_pred             cccCHHHHcCCCCCCccceechHHHHHHHHHCCCCcccccccccccccchHHHHHHHHc-------CCCCCCCCCCHHHH
Confidence            99999999988899999999999999999999999974322110 00011111111100       11123344556789


Q ss_pred             HHHHHcccCCCCCCC-h
Q 044568          235 KVGLWCVQDEPALRP-M  250 (257)
Q Consensus       235 ~l~~~cl~~~p~~RP-~  250 (257)
                      +++.+||+.||.+|| +
T Consensus       234 ~li~~~L~~dP~~R~~~  250 (329)
T cd05588         234 SVLKGFLNKDPKERLGC  250 (329)
T ss_pred             HHHHHHhccCHHHcCCC
Confidence            999999999999998 5

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=100.00  E-value=1.9e-35  Score=253.69  Aligned_cols=217  Identities=16%  Similarity=0.159  Sum_probs=170.3

Q ss_pred             ccccceeeecccCC-CCCeeeccchh------------hhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFNAR-NSPWISRVSWT------------ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~~~-~~~~i~~~~~~------------~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||+++...+ ..+++|.....            .|.+.+.        ....|+|++++.+.+...+..++||||
T Consensus         6 G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~--------~~~~hp~i~~~~~~~~~~~~~~lv~E~   77 (321)
T cd05591           6 GSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILA--------LAAKHPFLTALHCCFQTKDRLFFVMEY   77 (321)
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHH--------hccCCCCccceeeEEEcCCeEEEEEeC
Confidence            56899999987654 55677765421            1111111        123699999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC---CC
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN---ED  147 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~---~~  147 (257)
                      +++|+|.+.+.  ....+++..+..++.|++.||.|||++   +++||||||+||+++.++.++|+|||++....   ..
T Consensus        78 ~~~~~L~~~l~--~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~  152 (321)
T cd05591          78 VNGGDLMFQIQ--RSRKFDEPRSRFYAAEVTLALMFLHRH---GVIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVT  152 (321)
T ss_pred             CCCCcHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEEeecccceecccCCcc
Confidence            99999999997  456789999999999999999999999   99999999999999999999999999886422   11


Q ss_pred             cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcC-CCCC
Q 044568          148 FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRG-TKVD  226 (257)
Q Consensus       148 ~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  226 (257)
                      .....+++.|+|||.+.+..++.++|+||||+++|||++|+.||......   ....             ..... ...+
T Consensus       153 ~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~~~~~---~~~~-------------~i~~~~~~~p  216 (321)
T cd05591         153 TTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEADNED---DLFE-------------SILHDDVLYP  216 (321)
T ss_pred             ccccccCccccCHHHHcCCCCCCccceechhHHHHHHhcCCCCCCCCCHH---HHHH-------------HHHcCCCCCC
Confidence            23345788999999999888999999999999999999999999755211   1111             11111 1223


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCC
Q 044568          227 KKNLENLVKVGLWCVQDEPALRP  249 (257)
Q Consensus       227 ~~~~~~l~~l~~~cl~~~p~~RP  249 (257)
                      ......+.+++..||+.||++||
T Consensus       217 ~~~~~~~~~ll~~~L~~dp~~R~  239 (321)
T cd05591         217 VWLSKEAVSILKAFMTKNPNKRL  239 (321)
T ss_pred             CCCCHHHHHHHHHHhccCHHHcC
Confidence            33456788999999999999998

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.9e-36  Score=259.89  Aligned_cols=235  Identities=16%  Similarity=0.157  Sum_probs=176.2

Q ss_pred             ccccceeeeccc-CCCCCeeeccchhhhHH---HHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHH
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSWTADIE---VLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDI   79 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~   79 (257)
                      +.++.||+++.. +++.+++|........+   ...+......+..+.|+|++++...+...+..++||||+++|+|.++
T Consensus        12 G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~   91 (350)
T cd05573          12 GAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVMEYMPGGDLMNL   91 (350)
T ss_pred             CCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEEcCCCCCCHHHH
Confidence            568999999976 45667777654211000   00001111123377899999999999999999999999999999999


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-----------
Q 044568           80 IFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-----------  148 (257)
Q Consensus        80 l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-----------  148 (257)
                      +..  ...+++..+..++.|++.||.|||++   +++||||||+||+++.++.++|+|||++.......           
T Consensus        92 l~~--~~~l~~~~~~~i~~qi~~aL~~LH~~---giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~  166 (350)
T cd05573          92 LIR--KDVFPEETARFYIAELVLALDSVHKL---GFIHRDIKPDNILIDADGHIKLADFGLCKKMNKAKDREYYLNDSHN  166 (350)
T ss_pred             HHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEeecCCCCccCcccCccccccccccc
Confidence            974  36799999999999999999999999   99999999999999999999999999987543221           


Q ss_pred             ---------------------ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHH
Q 044568          149 ---------------------VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWV  207 (257)
Q Consensus       149 ---------------------~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~  207 (257)
                                           ....+|+.|+|||.+.+..++.++|||||||++|||++|+.||...........+..| 
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~~~~~~i~~~-  245 (350)
T cd05573         167 LLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFYSDTLQETYNKIINW-  245 (350)
T ss_pred             ccccccccccccccccccccccccccCccccCHHHHcCCCCCCceeeEecchhhhhhccCCCCCCCCCHHHHHHHHhcc-
Confidence                                 3346788899999999989999999999999999999999999755211110000000 


Q ss_pred             HHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC--hHHHHH
Q 044568          208 YKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP--MKCAVM  255 (257)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP--~~ei~~  255 (257)
                               ...... +.....++.+.+++.+|++ ||.+||  +.|+++
T Consensus       246 ---------~~~~~~-p~~~~~~~~~~~li~~ll~-dp~~R~~s~~~ll~  284 (350)
T cd05573         246 ---------KESLRF-PPDPPVSPEAIDLICRLLC-DPEDRLGSFEEIKS  284 (350)
T ss_pred             ---------CCcccC-CCCCCCCHHHHHHHHHHcc-ChhhcCCCHHHHhc
Confidence                     000000 1111135778899999997 999999  777764

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=100.00  E-value=3.8e-35  Score=258.58  Aligned_cols=230  Identities=16%  Similarity=0.174  Sum_probs=174.7

Q ss_pred             cccccceeeecccCC------CCCeeeccc----------hhhhHHHHhHhhhcccccccc-CCceeeeceeeeecCcee
Q 044568            3 CTKLSNFYRSSFNAR------NSPWISRVS----------WTADIEVLSVAMRGSKCTRIR-GGLLLNVPVRAKLTSVSG   65 (257)
Q Consensus         3 ~~~~~~~y~~~~~~~------~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~-h~~i~~~~~~~~~~~~~~   65 (257)
                      .+.|+.||+|+....      ..+++|...          +.+|++++.         ++. |+||+++.+.+...+..+
T Consensus        47 ~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~---------~l~~HpnIv~l~~~~~~~~~~~  117 (400)
T cd05105          47 SGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMT---------HLGPHLNIVNLLGACTKSGPIY  117 (400)
T ss_pred             CCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHH---------hcCCCCCeeeEEEEEccCCceE
Confidence            367899999985322      236676553          233444444         664 999999999999999999


Q ss_pred             EEEeecCCCCHHHHHhccC-------------------------------------------------------------
Q 044568           66 KIERPVRNGSLTDIIFCSA-------------------------------------------------------------   84 (257)
Q Consensus        66 lV~E~~~~gsL~~~l~~~~-------------------------------------------------------------   84 (257)
                      ||||||++|+|.++|....                                                             
T Consensus       118 lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (400)
T cd05105         118 IITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQYVPMLEIKEA  197 (400)
T ss_pred             EEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccccccchhhhhhhh
Confidence            9999999999999986421                                                             


Q ss_pred             ---------------------------------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCC
Q 044568           85 ---------------------------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW  131 (257)
Q Consensus        85 ---------------------------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~  131 (257)
                                                       ...+++.++..++.|++.||.|||++   +++|+||+|+||+++.++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivH~dikp~Nill~~~~  274 (400)
T cd05105         198 SKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLASK---NCVHRDLAARNVLLAQGK  274 (400)
T ss_pred             hhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChHhEEEeCCC
Confidence                                             13478888899999999999999999   999999999999999999


Q ss_pred             ceEEeeecccccCCCCc-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHH
Q 044568          132 TAKILDFGLAKLPNEDF-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTN  205 (257)
Q Consensus       132 ~~kl~dfg~~~~~~~~~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~  205 (257)
                      .+||+|||++.......     ....++..|+|||.+.+..++.++||||||+++|||++ |..||........   .. 
T Consensus       275 ~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~~~~~---~~-  350 (400)
T cd05105         275 IVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMIVDST---FY-  350 (400)
T ss_pred             EEEEEeCCcceeccccccccccCCcCCCcceEChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCcccchhHH---HH-
Confidence            99999999987432211     12234567999999988889999999999999999997 9999874421111   00 


Q ss_pred             HHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          206 WVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                         ..     ..... ....+...+..+.+++.+||+.||++|| +.++.++|
T Consensus       351 ---~~-----~~~~~-~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~l  394 (400)
T cd05105         351 ---NK-----IKSGY-RMAKPDHATQEVYDIMVKCWNSEPEKRPSFLHLSDIV  394 (400)
T ss_pred             ---HH-----HhcCC-CCCCCccCCHHHHHHHHHHCccCHhHCcCHHHHHHHH
Confidence               00     00000 0122334567899999999999999999 99998864

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=100.00  E-value=3.4e-35  Score=257.80  Aligned_cols=236  Identities=15%  Similarity=0.103  Sum_probs=170.7

Q ss_pred             ccccceeeecccC-CCCCeeeccchhh---hHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHH
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSWTA---DIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDI   79 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~   79 (257)
                      +.++.||+++... +..+++|...-..   .-+...+...-..+.++.|+|++++.+.+...+..++||||+++|+|.++
T Consensus        12 G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~   91 (381)
T cd05626          12 GAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIPGGDMMSL   91 (381)
T ss_pred             cCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEEecCCCCcHHHH
Confidence            5789999998544 4556777654211   00000111111133378999999999999999999999999999999999


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC------------
Q 044568           80 IFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED------------  147 (257)
Q Consensus        80 l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~------------  147 (257)
                      +.  ....+++..+..++.|++.||.|||++   +|+||||||+||+++.++.++|+|||++......            
T Consensus        92 l~--~~~~~~e~~~~~~~~qi~~aL~~LH~~---givHrDlKp~Nili~~~~~~kL~DFGl~~~~~~~~~~~~~~~~~~~  166 (381)
T cd05626          92 LI--RMEVFPEVLARFYIAELTLAIESVHKM---GFIHRDIKPDNILIDLDGHIKLTDFGLCTGFRWTHNSKYYQKGSHI  166 (381)
T ss_pred             HH--hcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCcHHHEEECCCCCEEEeeCcCCcccccccccccccccccc
Confidence            97  445789999999999999999999999   9999999999999999999999999986422100            


Q ss_pred             --------------------------------------cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCC
Q 044568          148 --------------------------------------FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRK  189 (257)
Q Consensus       148 --------------------------------------~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~  189 (257)
                                                            .....||+.|+|||.+.+..++.++|||||||++|||++|..
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~  246 (381)
T cd05626         167 RQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWSVGVILFEMLVGQP  246 (381)
T ss_pred             cccccCcccccccccccccccccchhhccccccccccccccccCCccccCHHHHcCCCCCCccceeehhhHHHHHHhCCC
Confidence                                                  012358889999999998889999999999999999999999


Q ss_pred             CCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHH--cccCCCCCCC-hHHHHH
Q 044568          190 NMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLW--CVQDEPALRP-MKCAVM  255 (257)
Q Consensus       190 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--cl~~~p~~RP-~~ei~~  255 (257)
                      ||..............|.          .... ..........+.+++.+  |+..+|..|| +.|+++
T Consensus       247 Pf~~~~~~~~~~~i~~~~----------~~~~-~~~~~~~s~~~~dli~~ll~~~~~~~~R~~~~~~l~  304 (381)
T cd05626         247 PFLAPTPTETQLKVINWE----------NTLH-IPPQVKLSPEAVDLITKLCCSAEERLGRNGADDIKA  304 (381)
T ss_pred             CCcCCCHHHHHHHHHccc----------cccC-CCCCCCCCHHHHHHHHHHccCcccccCCCCHHHHhc
Confidence            997553221111111100          0000 01111233556677766  6667777799 999875

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=100.00  E-value=6.6e-35  Score=241.81  Aligned_cols=226  Identities=22%  Similarity=0.290  Sum_probs=174.9

Q ss_pred             ccccceeeecccCCCCCeeeccc-------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCH
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS-------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSL   76 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~-------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL   76 (257)
                      +.++.||+++. .+..+++|...       +.+|++.+.         ++.|+|++++.+.+.. +..++||||+++++|
T Consensus        17 g~~g~v~~~~~-~~~~~~iK~~~~~~~~~~~~~e~~~l~---------~~~~~~i~~~~~~~~~-~~~~~v~e~~~~~~L   85 (254)
T cd05083          17 GEFGAVLQGEY-TGQKVAVKNIKCDVTAQAFLEETAVMT---------KLHHKNLVRLLGVILH-NGLYIVMELMSKGNL   85 (254)
T ss_pred             CCCCceEeccc-CCCceEEEeecCcchHHHHHHHHHHHH---------hCCCCCcCeEEEEEcC-CCcEEEEECCCCCCH
Confidence            46788999875 56667777654       233444443         8889999999998765 457899999999999


Q ss_pred             HHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcccccCCCC
Q 044568           77 TDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG  156 (257)
Q Consensus        77 ~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~  156 (257)
                      .+++.......+++..+..++.|++.|+.|||++   +++|||++|+||+++.++.++|+|||.+............+..
T Consensus        86 ~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~~~H~dl~p~nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~  162 (254)
T cd05083          86 VNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESK---KLVHRDLAARNILVSEDGVAKVSDFGLARVGSMGVDNSKLPVK  162 (254)
T ss_pred             HHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccccCcceEEEcCCCcEEECCCccceeccccCCCCCCCce
Confidence            9999864555689999999999999999999999   9999999999999999999999999988754333333334567


Q ss_pred             ccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHH
Q 044568          157 YMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVK  235 (257)
Q Consensus       157 ~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  235 (257)
                      |+|||.+.+..++.++|+||||+++||+++ |+.||.......    .....         ..... ...+...+..+.+
T Consensus       163 y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~----~~~~~---------~~~~~-~~~~~~~~~~~~~  228 (254)
T cd05083         163 WTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMSLKE----VKECV---------EKGYR-MEPPEGCPADVYV  228 (254)
T ss_pred             ecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCccCCHHH----HHHHH---------hCCCC-CCCCCcCCHHHHH
Confidence            999999988889999999999999999998 999996442110    10000         00000 0122344578899


Q ss_pred             HHHHcccCCCCCCC-hHHHHHhC
Q 044568          236 VGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       236 l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ++.+||+.+|++|| ++++++.|
T Consensus       229 li~~~l~~~p~~Rp~~~~l~~~l  251 (254)
T cd05083         229 LMTSCWETEPKKRPSFHKLREKL  251 (254)
T ss_pred             HHHHHcCCChhhCcCHHHHHHHH
Confidence            99999999999999 99998764

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=100.00  E-value=6.5e-35  Score=243.58  Aligned_cols=234  Identities=19%  Similarity=0.216  Sum_probs=174.3

Q ss_pred             ccccceeeecccCCC----CCeeeccchh---hhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCH
Q 044568            4 TKLSNFYRSSFNARN----SPWISRVSWT---ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSL   76 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~----~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL   76 (257)
                      +.++.||+++.....    .+++|.....   ...+.+.  ..-..+.++.|+|++++.+.+...+..++||||+++++|
T Consensus        16 g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~--~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   93 (268)
T cd05063          16 GEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFL--SEASIMGQFSHHNIIRLEGVVTKFKPAMIITEYMENGAL   93 (268)
T ss_pred             CCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHH--HHHHHHhcCCCCCeeEEEEEEccCCCcEEEEEcCCCCCH
Confidence            457889999976443    3556554321   1111110  000123378899999999999999999999999999999


Q ss_pred             HHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcc------c
Q 044568           77 TDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFV------I  150 (257)
Q Consensus        77 ~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~------~  150 (257)
                      .+++.. ....+++.++..++.|++.|+.|||++   +++|+|++|+||++++++.++++|||++........      .
T Consensus        94 ~~~~~~-~~~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~  169 (268)
T cd05063          94 DKYLRD-HDGEFSSYQLVGMLRGIAAGMKYLSDM---NYVHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEGTYTTSG  169 (268)
T ss_pred             HHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccchhhEEEcCCCcEEECCCccceecccccccceeccC
Confidence            999975 456789999999999999999999999   999999999999999999999999998864432211      1


Q ss_pred             ccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHH
Q 044568          151 DKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKN  229 (257)
Q Consensus       151 ~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (257)
                      ...+..|+|||.+.+..++.++|+||||+++||+++ |+.||......   .....          +... ...+.+.+.
T Consensus       170 ~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~~~~---~~~~~----------i~~~-~~~~~~~~~  235 (268)
T cd05063         170 GKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDMSNH---EVMKA----------INDG-FRLPAPMDC  235 (268)
T ss_pred             CCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcCCHH---HHHHH----------HhcC-CCCCCCCCC
Confidence            112345999999988888999999999999999997 99999643211   00100          0000 011223345


Q ss_pred             HHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          230 LENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       230 ~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      +..+.+++.+||+.+|++|| +.++++.|
T Consensus       236 ~~~~~~li~~c~~~~p~~Rp~~~~i~~~l  264 (268)
T cd05063         236 PSAVYQLMLQCWQQDRARRPRFVDIVNLL  264 (268)
T ss_pred             CHHHHHHHHHHcCCCcccCcCHHHHHHHH
Confidence            67889999999999999999 99998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=100.00  E-value=7.2e-35  Score=242.48  Aligned_cols=227  Identities=19%  Similarity=0.307  Sum_probs=177.3

Q ss_pred             ccccceeeecccCCCCCeeeccc--------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS--------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGS   75 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gs   75 (257)
                      +.++.||++....+..+++|...        +.+|++++.         ++.|+|++++.+.+.. ...+++|||+++|+
T Consensus        17 g~~~~vy~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~---------~l~~~~i~~~~~~~~~-~~~~~v~e~~~~~~   86 (260)
T cd05073          17 GQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMK---------TLQHDKLVKLHAVVTK-EPIYIITEFMAKGS   86 (260)
T ss_pred             ccceEEEEEEecCCccEEEEecCCChhHHHHHHHHHHHHH---------hcCCCCcceEEEEEcC-CCeEEEEEeCCCCc
Confidence            46789999998877778887543        233444444         8889999999888877 78899999999999


Q ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc----ccc
Q 044568           76 LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF----VID  151 (257)
Q Consensus        76 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~----~~~  151 (257)
                      |.+++.......+++..+..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||.+.......    ...
T Consensus        87 L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~---~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~  163 (260)
T cd05073          87 LLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGA  163 (260)
T ss_pred             HHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHhC---CccccccCcceEEEcCCCcEEECCCcceeeccCCCcccccCC
Confidence            99999764556688899999999999999999999   99999999999999999999999999886543221    112


Q ss_pred             cCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHH
Q 044568          152 KRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNL  230 (257)
Q Consensus       152 ~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (257)
                      .++..|+|||.+....++.++|+||||+++|++++ |..||.......    ......         ... ....+...+
T Consensus       164 ~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~----~~~~~~---------~~~-~~~~~~~~~  229 (260)
T cd05073         164 KFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPE----VIRALE---------RGY-RMPRPENCP  229 (260)
T ss_pred             cccccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCCCHHH----HHHHHh---------CCC-CCCCcccCC
Confidence            33456999999988888999999999999999999 999997542111    111100         000 001223445


Q ss_pred             HHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          231 ENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       231 ~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ..+.+++.+||+.+|++|| +.++.++|
T Consensus       230 ~~~~~~i~~~l~~~p~~Rp~~~~l~~~L  257 (260)
T cd05073         230 EELYNIMMRCWKNRPEERPTFEYIQSVL  257 (260)
T ss_pred             HHHHHHHHHHcccCcccCcCHHHHHHHH
Confidence            6799999999999999999 99998875

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.1e-37  Score=259.35  Aligned_cols=230  Identities=21%  Similarity=0.187  Sum_probs=182.8

Q ss_pred             ccccceeeecccCCCCC-eeeccch-hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHHHh
Q 044568            4 TKLSNFYRSSFNARNSP-WISRVSW-TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIF   81 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~-~i~~~~~-~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~   81 (257)
                      ++|++||||....+..+ ++|.... ..+.++.+++..-..+...+++||.+..+....+...+++||||.||++.+.+.
T Consensus        24 GsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiMey~~gGsv~~lL~  103 (467)
T KOG0201|consen   24 GSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIMEYCGGGSVLDLLK  103 (467)
T ss_pred             cccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHHHHhcCcchhhhhc
Confidence            68999999997766655 5777664 222223333333333447788999999999999999999999999999999996


Q ss_pred             ccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc---ccccCCCCcc
Q 044568           82 CSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF---VIDKRDKGYM  158 (257)
Q Consensus        82 ~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~---~~~~~~~~~~  158 (257)
                        .+..+.+....-+++++..|+.|||.+   +.+|||||+.||++...|.+||+|||++-....+.   ....||+.||
T Consensus       104 --~~~~~~E~~i~~ilre~l~~l~ylH~~---~kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~~~rr~tfvGTPfwM  178 (467)
T KOG0201|consen  104 --SGNILDEFEIAVILREVLKGLDYLHSE---KKIHRDIKAANILLSESGDVKLADFGVAGQLTNTVKRRKTFVGTPFWM  178 (467)
T ss_pred             --cCCCCccceeeeehHHHHHHhhhhhhc---ceecccccccceeEeccCcEEEEecceeeeeechhhcccccccccccc
Confidence              455557777778899999999999999   99999999999999999999999999976543322   5668999999


Q ss_pred             CcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc---CCCCCHHHHHHHHH
Q 044568          159 APECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR---GTKVDKKNLENLVK  235 (257)
Q Consensus       159 aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~  235 (257)
                      |||++....|+.++||||||++.+||++|.+|+....+-..                 .-++.   +......+.+.+.+
T Consensus       179 APEVI~~~~Y~~KADIWSLGITaiEla~GePP~s~~hPmrv-----------------lflIpk~~PP~L~~~~S~~~kE  241 (467)
T KOG0201|consen  179 APEVIKQSGYDTKADIWSLGITAIELAKGEPPHSKLHPMRV-----------------LFLIPKSAPPRLDGDFSPPFKE  241 (467)
T ss_pred             chhhhccccccchhhhhhhhHHHHHHhcCCCCCcccCcceE-----------------EEeccCCCCCccccccCHHHHH
Confidence            99999988999999999999999999999999975422110                 01111   11222355677899


Q ss_pred             HHHHcccCCCCCCC-hHHHHH
Q 044568          236 VGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       236 l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ++..||++||+.|| +.++++
T Consensus       242 FV~~CL~k~P~~RpsA~~LLK  262 (467)
T KOG0201|consen  242 FVEACLDKNPEFRPSAKELLK  262 (467)
T ss_pred             HHHHHhhcCcccCcCHHHHhh
Confidence            99999999999999 999975

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=100.00  E-value=3.9e-35  Score=249.70  Aligned_cols=228  Identities=20%  Similarity=0.276  Sum_probs=171.6

Q ss_pred             ccccceeeecccCCCC---Ceeeccc----------hhhhHHHHhHhhhccccccc-cCCceeeeceeeeecCceeEEEe
Q 044568            4 TKLSNFYRSSFNARNS---PWISRVS----------WTADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVSGKIER   69 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~---~~i~~~~----------~~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~~lV~E   69 (257)
                      +.++.||++...+...   ++++...          +.+|++.+.         ++ .|+|++++.+.+...+..++|||
T Consensus        18 G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~---------~l~~h~~iv~~~~~~~~~~~~~lv~e   88 (303)
T cd05088          18 GNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLC---------KLGHHPNIINLLGACEHRGYLYLAIE   88 (303)
T ss_pred             CCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHH---------HhcCCCCcceEEEEECCCCCceEEEE
Confidence            4688999998755432   2444432          223444333         66 79999999999999999999999


Q ss_pred             ecCCCCHHHHHhccC--------------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEE
Q 044568           70 PVRNGSLTDIIFCSA--------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKI  135 (257)
Q Consensus        70 ~~~~gsL~~~l~~~~--------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl  135 (257)
                      |+++|+|.+++....              ...+++.+++.++.|++.|++|||++   +++||||+|+||+++.++.++|
T Consensus        89 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~---gi~H~dlkp~Nili~~~~~~kl  165 (303)
T cd05088          89 YAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENYVAKI  165 (303)
T ss_pred             eCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhC---CccccccchheEEecCCCcEEe
Confidence            999999999997421              23588999999999999999999999   9999999999999999999999


Q ss_pred             eeecccccCCCCc--ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhh
Q 044568          136 LDFGLAKLPNEDF--VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFI  212 (257)
Q Consensus       136 ~dfg~~~~~~~~~--~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~  212 (257)
                      +|||++.......  .....+..|+|||.+.+..++.++||||||+++||+++ |..||........   ...       
T Consensus       166 ~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~---~~~-------  235 (303)
T cd05088         166 ADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAEL---YEK-------  235 (303)
T ss_pred             CccccCcccchhhhcccCCCcccccCHHHHhccCCcccccchhhhhHHHHHHhcCCCCcccCChHHH---HHH-------
Confidence            9999886322111  11123456999999988888999999999999999998 9999964421110   000       


Q ss_pred             hhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          213 NRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                         ..... ....+...+..+.+++.+||+.+|++|| ++++++.|
T Consensus       236 ---~~~~~-~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~l  277 (303)
T cd05088         236 ---LPQGY-RLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSL  277 (303)
T ss_pred             ---HhcCC-cCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence               00000 0012223456789999999999999999 99998753

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=100.00  E-value=7.7e-35  Score=242.21  Aligned_cols=227  Identities=22%  Similarity=0.332  Sum_probs=177.8

Q ss_pred             ccccceeeecccCCCCCeeeccc--------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS--------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGS   75 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gs   75 (257)
                      +.++.||++...++..+++|...        +.+|++.+.         ++.|+|++++.+.. ..+..++||||+++++
T Consensus        17 G~~g~v~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~---------~l~h~~i~~~~~~~-~~~~~~~v~e~~~~~~   86 (260)
T cd05067          17 GQFGEVWMGYYNGHTKVAIKSLKQGSMSPEAFLAEANLMK---------QLQHPRLVRLYAVV-TQEPIYIITEYMENGS   86 (260)
T ss_pred             CccceEEeeecCCCceEEEEEecCCCCcHHHHHHHHHHHH---------hcCCcCeeeEEEEE-ccCCcEEEEEcCCCCC
Confidence            56789999998888888887544        233444443         88899999998875 4567899999999999


Q ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc----ccc
Q 044568           76 LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF----VID  151 (257)
Q Consensus        76 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~----~~~  151 (257)
                      |.+++.......+++.++..++.|++.||.|||+.   +++|+||+|+||+++.++.++++|||.+.......    ...
T Consensus        87 L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~---~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~  163 (260)
T cd05067          87 LVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERK---NYIHRDLRAANILVSETLCCKIADFGLARLIEDNEYTAREGA  163 (260)
T ss_pred             HHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecccccHHhEEEcCCCCEEEccCcceeecCCCCcccccCC
Confidence            99999764556789999999999999999999999   99999999999999999999999999987544221    122


Q ss_pred             cCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHH
Q 044568          152 KRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNL  230 (257)
Q Consensus       152 ~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (257)
                      .++..|+|||.+....++.++|+||||+++||+++ |+.||.......   ....          ..... ....+...+
T Consensus       164 ~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~---~~~~----------~~~~~-~~~~~~~~~  229 (260)
T cd05067         164 KFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMTNPE---VIQN----------LERGY-RMPRPDNCP  229 (260)
T ss_pred             cccccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCCChHH---HHHH----------HHcCC-CCCCCCCCC
Confidence            34557999999988888999999999999999999 999997542111   0100          00000 012223345


Q ss_pred             HHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          231 ENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       231 ~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ..+.+++.+||+.+|++|| ++++++.|
T Consensus       230 ~~~~~li~~~l~~~p~~Rp~~~~l~~~l  257 (260)
T cd05067         230 EELYELMRLCWKEKPEERPTFEYLRSVL  257 (260)
T ss_pred             HHHHHHHHHHccCChhhCCCHHHHHHHh
Confidence            6799999999999999999 99998865

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=100.00  E-value=5.8e-35  Score=245.79  Aligned_cols=226  Identities=16%  Similarity=0.198  Sum_probs=173.1

Q ss_pred             ccccceeeeccc------CCCCCeeeccc---------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEE
Q 044568            4 TKLSNFYRSSFN------ARNSPWISRVS---------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIE   68 (257)
Q Consensus         4 ~~~~~~y~~~~~------~~~~~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~   68 (257)
                      +.++.||+++..      ++...+++...         +.++++.+.         ++.|+|++++.+.+...+..++||
T Consensus        16 g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~---------~l~h~~i~~~~~~~~~~~~~~lv~   86 (280)
T cd05092          16 GAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLT---------VLQHQHIVRFYGVCTEGRPLLMVF   86 (280)
T ss_pred             ccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHh---------cCCCCCCceEEEEEecCCceEEEE
Confidence            467889988632      22334444332         344444444         889999999999999999999999


Q ss_pred             eecCCCCHHHHHhccCC-------------CCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEE
Q 044568           69 RPVRNGSLTDIIFCSAE-------------RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKI  135 (257)
Q Consensus        69 E~~~~gsL~~~l~~~~~-------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl  135 (257)
                      ||+++|+|.+++.....             ..+++..+..++.|++.|+.|||++   +++|+||+|+||++++++.++|
T Consensus        87 e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~---~i~H~dlkp~nil~~~~~~~kL  163 (280)
T cd05092          87 EYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASL---HFVHRDLATRNCLVGQGLVVKI  163 (280)
T ss_pred             ecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHC---CeecccccHhhEEEcCCCCEEE
Confidence            99999999999975321             3588999999999999999999999   9999999999999999999999


Q ss_pred             eeecccccCCCCc-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHH
Q 044568          136 LDFGLAKLPNEDF-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYK  209 (257)
Q Consensus       136 ~dfg~~~~~~~~~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~  209 (257)
                      +|||++.......     ....+++.|+|||.+.+..++.++|+||||+++||+++ |..||.......   ..      
T Consensus       164 ~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~---~~------  234 (280)
T cd05092         164 GDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSNTE---AI------  234 (280)
T ss_pred             CCCCceeEcCCCceeecCCCccccccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCccCCHHH---HH------
Confidence            9999886432221     12233567999999988889999999999999999998 899986432111   00      


Q ss_pred             hhhhhhhhhhhc--CCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          210 CFINRELNKLVR--GTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       210 ~~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                             .....  ....+...+..+.+++.+||+.||.+|| +.|+++.|
T Consensus       235 -------~~~~~~~~~~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~l~~~l  278 (280)
T cd05092         235 -------ECITQGRELERPRTCPPEVYAIMQGCWQREPQQRMVIKDIHSRL  278 (280)
T ss_pred             -------HHHHcCccCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHH
Confidence                   00001  0122334556789999999999999999 99998865

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=100.00  E-value=4.1e-35  Score=252.24  Aligned_cols=233  Identities=16%  Similarity=0.199  Sum_probs=172.9

Q ss_pred             ccccceeeecccCCC-CCeeeccchh-----hhHHHHhHhhhccccccc-cCCceeeeceeeeecCceeEEEeecCCCCH
Q 044568            4 TKLSNFYRSSFNARN-SPWISRVSWT-----ADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVSGKIERPVRNGSL   76 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~-~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL   76 (257)
                      +.++.||+++...+. .+++|...-.     ..++.+.  .......++ .|++++.+.+.+...+..++||||+++|+|
T Consensus         6 G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L   83 (327)
T cd05617           6 GSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQ--TEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNGGDL   83 (327)
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHH--HHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCCCcH
Confidence            568999999976554 4566655421     1111111  000011133 599999999999999999999999999999


Q ss_pred             HHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccC---CCCcccccC
Q 044568           77 TDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLP---NEDFVIDKR  153 (257)
Q Consensus        77 ~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~---~~~~~~~~~  153 (257)
                      .+++.  ....+++..+..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++...   ........+
T Consensus        84 ~~~~~--~~~~l~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~g  158 (327)
T cd05617          84 MFHMQ--RQRKLPEEHARFYAAEICIALNFLHER---GIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGDTTSTFCG  158 (327)
T ss_pred             HHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEeCCCCEEEeccccceeccCCCCceecccC
Confidence            99987  446799999999999999999999999   9999999999999999999999999988642   122244568


Q ss_pred             CCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHH
Q 044568          154 DKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENL  233 (257)
Q Consensus       154 ~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  233 (257)
                      |+.|+|||.+.+..++.++|+||||+++|||++|..||......... ....+.....       ...+...+......+
T Consensus       159 t~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g~~pf~~~~~~~~~-~~~~~~~~~~-------~~~~~~~p~~~~~~~  230 (327)
T cd05617         159 TPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDM-NTEDYLFQVI-------LEKPIRIPRFLSVKA  230 (327)
T ss_pred             CcccCCHHHHCCCCCCchheeehhHHHHHHHHhCCCCCCccCCCccc-ccHHHHHHHH-------HhCCCCCCCCCCHHH
Confidence            89999999999888999999999999999999999999643221110 0001111100       011112344455678


Q ss_pred             HHHHHHcccCCCCCCC-hH
Q 044568          234 VKVGLWCVQDEPALRP-MK  251 (257)
Q Consensus       234 ~~l~~~cl~~~p~~RP-~~  251 (257)
                      .+++.+||+.||.+|| +.
T Consensus       231 ~~li~~~L~~dP~~R~~~~  249 (327)
T cd05617         231 SHVLKGFLNKDPKERLGCQ  249 (327)
T ss_pred             HHHHHHHhccCHHHcCCCC
Confidence            8999999999999998 64

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=100.00  E-value=5.8e-35  Score=244.24  Aligned_cols=242  Identities=16%  Similarity=0.171  Sum_probs=169.4

Q ss_pred             cccccceeeecccCC---CCCeeeccchhhhHH-HHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHH
Q 044568            3 CTKLSNFYRSSFNAR---NSPWISRVSWTADIE-VLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTD   78 (257)
Q Consensus         3 ~~~~~~~y~~~~~~~---~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~   78 (257)
                      .+.++.||+|+...+   ...++|........+ ...+......+.++.|+|++++.+.+...+..++||||+++|+|.+
T Consensus         5 ~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~   84 (269)
T cd05087           5 NGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCPLGDLKG   84 (269)
T ss_pred             ccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCCCCcHHH
Confidence            357899999986543   235666543211000 0000001113348899999999999999999999999999999999


Q ss_pred             HHhccC---CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-----cc
Q 044568           79 IIFCSA---ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-----VI  150 (257)
Q Consensus        79 ~l~~~~---~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-----~~  150 (257)
                      ++....   ...+++..+..++.|++.|+.|||++   +++|+|+||+||+++.++.++|+|||.+.......     ..
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~  161 (269)
T cd05087          85 YLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKN---NFIHSDLALRNCLLTADLTVKIGDYGLSHNKYKEDYYVTPDQ  161 (269)
T ss_pred             HHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHC---CEeccccCcceEEEcCCCcEEECCccccccccCcceeecCCC
Confidence            997422   23456778889999999999999999   99999999999999999999999999886432221     12


Q ss_pred             ccCCCCccCcccccCC-------CCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcC
Q 044568          151 DKRDKGYMAPECYKRT-------PISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRG  222 (257)
Q Consensus       151 ~~~~~~~~aPE~~~~~-------~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (257)
                      ..++..|+|||.+.+.       .++.++|+||||+++||+++ |..||........  ....+      ........+ 
T Consensus       162 ~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~~--~~~~~------~~~~~~~~~-  232 (269)
T cd05087         162 LWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLSDEQV--LTYTV------REQQLKLPK-  232 (269)
T ss_pred             cCCcccccCHhHhccccccccccCCCccchhHHHHHHHHHHHhCCCCCCCCCChHHH--HHHHh------hcccCCCCC-
Confidence            3456679999988642       35789999999999999996 9999975422111  00000      000001111 


Q ss_pred             CCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          223 TKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       223 ~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ........+.+.+++.+|| .+|++|| ++||++.|
T Consensus       233 ~~~~~~~~~~~~~l~~~c~-~~P~~Rpt~~~l~~~l  267 (269)
T cd05087         233 PRLKLPLSDRWYEVMQFCW-LQPEQRPSAEEVHLLL  267 (269)
T ss_pred             CccCCCCChHHHHHHHHHh-cCcccCCCHHHHHHHh
Confidence            1112223456888999999 6899999 99999875

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=4.9e-35  Score=243.32  Aligned_cols=224  Identities=15%  Similarity=0.207  Sum_probs=168.8

Q ss_pred             ccccceeeecccCCC--------CCeeeccc---------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeE
Q 044568            4 TKLSNFYRSSFNARN--------SPWISRVS---------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGK   66 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~--------~~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~l   66 (257)
                      +.++.||++......        .+++|...         +.++++.         +..+.|+|++++.+.+...+..++
T Consensus         6 G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~---------l~~~~h~~iv~~~~~~~~~~~~~l   76 (258)
T cd05078           6 GTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASM---------MSQLSHKHLVLNYGVCVCGDESIM   76 (258)
T ss_pred             ccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHH---------HHhCCCCChhheeeEEEeCCCcEE
Confidence            578999999865432        23444432         1222222         337789999999999999999999


Q ss_pred             EEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCc--------eEEeee
Q 044568           67 IERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT--------AKILDF  138 (257)
Q Consensus        67 V~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~--------~kl~df  138 (257)
                      ||||+++|+|.+++.. ....+++..+..++.|++.|+.|||++   +++||||+|+||+++.++.        ++++||
T Consensus        77 v~e~~~~g~L~~~l~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~---~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~  152 (258)
T cd05078          77 VQEYVKFGSLDTYLKK-NKNLINISWKLEVAKQLAWALHFLEDK---GLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDP  152 (258)
T ss_pred             EEecCCCCcHHHHHhc-CCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCccceEEEecccccccCCCceEEeccc
Confidence            9999999999999975 344689999999999999999999999   9999999999999987654        689999


Q ss_pred             cccccCCCCcccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcC-CCCCcCCCChhhHHHHHHHHHhhhhhhh
Q 044568          139 GLAKLPNEDFVIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCR-KNMEIDASKPEEIILTNWVYKCFINREL  216 (257)
Q Consensus       139 g~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~-~pf~~~~~~~~~~~~~~~~~~~~~~~~~  216 (257)
                      |.+..... .....++..|+|||.+.+. .++.++|+||||+++||+++|. .||.... .....   ..          
T Consensus       153 g~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~~~~~-~~~~~---~~----------  217 (258)
T cd05078         153 GISITVLP-KEILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLSALD-SQKKL---QF----------  217 (258)
T ss_pred             ccccccCC-chhccccCCccCchhccCCCCCCchhhHHHHHHHHHHHHcCCCCChhhcc-HHHHH---HH----------
Confidence            98764332 2334567789999999864 4789999999999999999985 5554321 11100   00          


Q ss_pred             hhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          217 NKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       217 ~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                        .......+......+.+++.+||+.+|++|| ++++++.|
T Consensus       218 --~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l  257 (258)
T cd05078         218 --YEDRHQLPAPKWTELANLINQCMDYEPDFRPSFRAIIRDL  257 (258)
T ss_pred             --HHccccCCCCCcHHHHHHHHHHhccChhhCCCHHHHHHhc
Confidence              0001122223346789999999999999999 99999876

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=100.00  E-value=4.4e-35  Score=251.60  Aligned_cols=226  Identities=17%  Similarity=0.162  Sum_probs=170.1

Q ss_pred             ccccceeeecccCC-CCCeeeccchhh---hHHHHhHhhhcccccc-ccCCceeeeceeeeecCceeEEEeecCCCCHHH
Q 044568            4 TKLSNFYRSSFNAR-NSPWISRVSWTA---DIEVLSVAMRGSKCTR-IRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTD   78 (257)
Q Consensus         4 ~~~~~~y~~~~~~~-~~~~i~~~~~~~---~~~~~~~~~~~~~~~~-~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~   78 (257)
                      +.++.||++....+ ..+++|...-..   .............+.. ..|++++++.+.+...+..++||||+++|+|.+
T Consensus        11 G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~g~L~~   90 (323)
T cd05616          11 GSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMY   90 (323)
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEEcCCCCCCHHH
Confidence            56889999986654 456777544211   0000000000001112 257888899999999999999999999999999


Q ss_pred             HHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC---CCcccccCCC
Q 044568           79 IIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN---EDFVIDKRDK  155 (257)
Q Consensus        79 ~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~---~~~~~~~~~~  155 (257)
                      .+.  ....+++.++..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++....   .......||+
T Consensus        91 ~~~--~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~  165 (323)
T cd05616          91 QIQ--QVGRFKEPHAVFYAAEIAIGLFFLHSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENMWDGVTTKTFCGTP  165 (323)
T ss_pred             HHH--HcCCCCHHHHHHHHHHHHHHHHHHHHC---CEEecCCCHHHeEECCCCcEEEccCCCceecCCCCCccccCCCCh
Confidence            997  446789999999999999999999999   99999999999999999999999999886432   1223446788


Q ss_pred             CccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc-CCCCCHHHHHHHH
Q 044568          156 GYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR-GTKVDKKNLENLV  234 (257)
Q Consensus       156 ~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~  234 (257)
                      .|+|||.+.+..++.++|+|||||++|||++|+.||......   .....             ... ...++......+.
T Consensus       166 ~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~~~~---~~~~~-------------i~~~~~~~p~~~s~~~~  229 (323)
T cd05616         166 DYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDED---ELFQS-------------IMEHNVAYPKSMSKEAV  229 (323)
T ss_pred             hhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCCCCCHH---HHHHH-------------HHhCCCCCCCcCCHHHH
Confidence            999999999999999999999999999999999999754211   11111             111 1123344567789


Q ss_pred             HHHHHcccCCCCCCC-h
Q 044568          235 KVGLWCVQDEPALRP-M  250 (257)
Q Consensus       235 ~l~~~cl~~~p~~RP-~  250 (257)
                      +++.+|++.||.+|+ .
T Consensus       230 ~li~~~l~~~p~~R~~~  246 (323)
T cd05616         230 AICKGLMTKHPGKRLGC  246 (323)
T ss_pred             HHHHHHcccCHHhcCCC
Confidence            999999999999999 6

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=100.00  E-value=5.3e-35  Score=233.18  Aligned_cols=236  Identities=17%  Similarity=0.137  Sum_probs=182.4

Q ss_pred             ccccceeeec-ccCCCCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            4 TKLSNFYRSS-FNARNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~-~~~~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      +.+++||+|+ ..+++.++||++..           .+|++.+.         .+.|+||+.+.+++...+..-||+|||
T Consensus        13 G~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lq---------el~h~nIi~LiD~F~~~~~l~lVfEfm   83 (318)
T KOG0659|consen   13 GTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQ---------ELKHPNIIELIDVFPHKSNLSLVFEFM   83 (318)
T ss_pred             cceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHH---------HccCcchhhhhhhccCCCceEEEEEec
Confidence            3578999999 45566677887653           45666665         888999999999999999999999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcc--
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFV--  149 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~--  149 (257)
                      +. +|+..|++ +...++..+.+.|+.+++.|++|||++   .|+|||+||.|+|++.++.+|++|||+++.......  
T Consensus        84 ~t-dLe~vIkd-~~i~l~pa~iK~y~~m~LkGl~y~H~~---~IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~p~~~~  158 (318)
T KOG0659|consen   84 PT-DLEVVIKD-KNIILSPADIKSYMLMTLKGLAYCHSK---WILHRDLKPNNLLISSDGQLKIADFGLARFFGSPNRIQ  158 (318)
T ss_pred             cc-cHHHHhcc-cccccCHHHHHHHHHHHHHHHHHHHhh---hhhcccCCccceEEcCCCcEEeecccchhccCCCCccc
Confidence            75 99999987 778899999999999999999999999   999999999999999999999999999997665442  


Q ss_pred             -cccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhh-----hhhh-----
Q 044568          150 -IDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFIN-----RELN-----  217 (257)
Q Consensus       150 -~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~-----~~~~-----  217 (257)
                       ...-|.=|.|||.+.+. .|+...|+||.||++.|++-|.+-|.+.+.-+   ++..........     +++.     
T Consensus       159 ~~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~sDid---QL~~If~~LGTP~~~~WP~~~~lpdY  235 (318)
T KOG0659|consen  159 THQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGDSDID---QLSKIFRALGTPTPDQWPEMTSLPDY  235 (318)
T ss_pred             ccceeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccCCCCCCCchHH---HHHHHHHHcCCCCcccCccccccccH
Confidence             23456669999999875 59999999999999999999988887663222   111111111000     0111     


Q ss_pred             -hhh--cCC---CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHh
Q 044568          218 -KLV--RGT---KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMM  256 (257)
Q Consensus       218 -~~~--~~~---~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~  256 (257)
                       .+.  +..   ..-..+.....+++..+|.+||.+|+ ++|.+++
T Consensus       236 ~~~~~~P~~~~~~lf~aas~d~ldLl~~m~~ynP~~Rita~qaL~~  281 (318)
T KOG0659|consen  236 VKIQQFPKPPLNNLFPAASSDALDLLSKMLTYNPKKRITASQALKH  281 (318)
T ss_pred             HHHhcCCCCccccccccccHHHHHHHHhhhccCchhcccHHHHhcc
Confidence             111  000   11222345679999999999999999 9998763

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=5.6e-35  Score=246.04  Aligned_cols=237  Identities=22%  Similarity=0.275  Sum_probs=172.7

Q ss_pred             ccccceeeecc-----cCCCCCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeec--CceeE
Q 044568            4 TKLSNFYRSSF-----NARNSPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT--SVSGK   66 (257)
Q Consensus         4 ~~~~~~y~~~~-----~~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~--~~~~l   66 (257)
                      +.++.||.++.     .++..+++|...          +.+|++++.         ++.|+|++++.+.+...  ...++
T Consensus        15 g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~i~~~~~~~~~~~~~~~~l   85 (283)
T cd05080          15 GHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILK---------TLYHENIVKYKGCCSEQGGKGLQL   85 (283)
T ss_pred             CCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHH---------hCCCCCEeeEEEEEecCCCceEEE
Confidence            35677866442     344456666543          223444444         88999999999987654  35789


Q ss_pred             EEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC
Q 044568           67 IERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE  146 (257)
Q Consensus        67 V~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~  146 (257)
                      ||||+++|+|.+++..   ..+++.++..++.|++.|+.|||++   +++|+||+|+||+++.++.++|+|||++.....
T Consensus        86 v~e~~~~~~l~~~~~~---~~l~~~~~~~i~~~l~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~  159 (283)
T cd05080          86 IMEYVPLGSLRDYLPK---HKLNLAQLLLFAQQICEGMAYLHSQ---HYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPE  159 (283)
T ss_pred             EecCCCCCCHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccChheEEEcCCCcEEEeecccccccCC
Confidence            9999999999999963   4599999999999999999999999   999999999999999999999999999875432


Q ss_pred             Cc------ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhh
Q 044568          147 DF------VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLV  220 (257)
Q Consensus       147 ~~------~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (257)
                      ..      ....++..|+|||.+.+..++.++||||||+++|||++|..||...........  ................
T Consensus       160 ~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  237 (283)
T cd05080         160 GHEYYRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMI--GPKQGQMTVVRLIELL  237 (283)
T ss_pred             cchhhccCCCCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHHhCCCCCCCCcchhhhhh--cccccccchhhhhhhh
Confidence            21      112334559999999888899999999999999999999999875432211110  0000000111111111


Q ss_pred             cC---CCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          221 RG---TKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       221 ~~---~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ..   ...+...+..+.+++..||+.+|++|| ++++++.|
T Consensus       238 ~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~i~~~l  278 (283)
T cd05080         238 ERGMRLPCPKNCPQEVYILMKNCWETEAKFRPTFRSLIPIL  278 (283)
T ss_pred             hcCCCCCCCCCCCHHHHHHHHHHhccChhhCCCHHHHHHHH
Confidence            11   122444567899999999999999999 99998764

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2e-35  Score=232.42  Aligned_cols=232  Identities=16%  Similarity=0.137  Sum_probs=187.5

Q ss_pred             ccccceeeecccCCCCCe-eeccchhhhHHHHhH--hhhc--cccccccCCceeeeceeeeecCceeEEEeecCCCCHHH
Q 044568            4 TKLSNFYRSSFNARNSPW-ISRVSWTADIEVLSV--AMRG--SKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTD   78 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~-i~~~~~~~~~~~~~~--~~~~--~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~   78 (257)
                      +||+.||-+..+.+.-.+ +|.+ |..++....+  ++..  +-.+.++||||+++.+++.+....||++||.++|++..
T Consensus        33 gkFG~vYlarekks~~IvalKVl-fKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~riyLilEya~~gel~k  111 (281)
T KOG0580|consen   33 GKFGNVYLAREKKSLFIVALKVL-FKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRIYLILEYAPRGELYK  111 (281)
T ss_pred             CccccEeEeeeccCCcEEEEeee-eHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccceeEEEEEecCCchHHH
Confidence            689999999977766554 4443 3333333332  1111  14558999999999999999999999999999999999


Q ss_pred             HHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccC-CCCcccccCCCCc
Q 044568           79 IIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLP-NEDFVIDKRDKGY  157 (257)
Q Consensus        79 ~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~-~~~~~~~~~~~~~  157 (257)
                      .|.+.....+++.....++.|++.|+.|+|.+   +++|||+||+|+|++..+.+|++|||-+... .......+||.-|
T Consensus       112 ~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~k---~VIhRdiKpenlLlg~~~~lkiAdfGwsV~~p~~kR~tlcgt~dy  188 (281)
T KOG0580|consen  112 DLQEGRMKRFDEQRAATYIKQLANALLYCHLK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSNKRKTLCGTLDY  188 (281)
T ss_pred             HHHhcccccccccchhHHHHHHHHHHHHhccC---CcccCCCCHHHhccCCCCCeeccCCCceeecCCCCceeeeccccc
Confidence            99976777899999999999999999999999   9999999999999999999999999987754 3344666889999


Q ss_pred             cCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC-CCCHHHHHHHHHH
Q 044568          158 MAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT-KVDKKNLENLVKV  236 (257)
Q Consensus       158 ~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l  236 (257)
                      ++||+..+..++...|+|++|++.||++.|.+||.+....+                .+..+.+.. .++........++
T Consensus       189 l~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~~~e----------------tYkrI~k~~~~~p~~is~~a~dl  252 (281)
T KOG0580|consen  189 LPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQSHSE----------------TYKRIRKVDLKFPSTISGGAADL  252 (281)
T ss_pred             CCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhhhHH----------------HHHHHHHccccCCcccChhHHHH
Confidence            99999999999999999999999999999999998653211                122222222 2344455678889


Q ss_pred             HHHcccCCCCCCC-hHHHHH
Q 044568          237 GLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       237 ~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +.+|+.++|.+|. ..|+++
T Consensus       253 I~~ll~~~p~~r~~l~~v~~  272 (281)
T KOG0580|consen  253 ISRLLVKNPIERLALTEVMD  272 (281)
T ss_pred             HHHHhccCccccccHHHHhh
Confidence            9999999999999 888864

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=100.00  E-value=7.3e-35  Score=247.27  Aligned_cols=228  Identities=20%  Similarity=0.260  Sum_probs=172.1

Q ss_pred             ccccceeeecccCCCC---Ceeeccc----------hhhhHHHHhHhhhccccccc-cCCceeeeceeeeecCceeEEEe
Q 044568            4 TKLSNFYRSSFNARNS---PWISRVS----------WTADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVSGKIER   69 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~---~~i~~~~----------~~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~~lV~E   69 (257)
                      +.++.||++...+...   .+++...          +.+|++.+.         ++ .|+|++++.+.+...+..++|||
T Consensus        13 g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~---------~l~~hp~iv~~~~~~~~~~~~~lv~e   83 (297)
T cd05089          13 GNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLC---------KLGHHPNIINLLGACENRGYLYIAIE   83 (297)
T ss_pred             CCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHH---------hhcCCCchhheEEEEccCCcceEEEE
Confidence            4678999998765432   3444332          233444443         55 69999999999999999999999


Q ss_pred             ecCCCCHHHHHhccC--------------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEE
Q 044568           70 PVRNGSLTDIIFCSA--------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKI  135 (257)
Q Consensus        70 ~~~~gsL~~~l~~~~--------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl  135 (257)
                      |+++|+|.+++....              ...+++..+..++.|++.||.|||++   +++|+||||+||+++.++.+||
T Consensus        84 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~---~ivH~dlkp~Nill~~~~~~kl  160 (297)
T cd05089          84 YAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEK---QFIHRDLAARNVLVGENLASKI  160 (297)
T ss_pred             ecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCcCCcceEEECCCCeEEE
Confidence            999999999996421              13588899999999999999999999   9999999999999999999999


Q ss_pred             eeecccccCCCCccc--ccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhh
Q 044568          136 LDFGLAKLPNEDFVI--DKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFI  212 (257)
Q Consensus       136 ~dfg~~~~~~~~~~~--~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~  212 (257)
                      +|||++.........  ...+..|+|||.+....++.++||||||+++|||++ |..||.......   ....       
T Consensus       161 ~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~~~~~---~~~~-------  230 (297)
T cd05089         161 ADFGLSRGEEVYVKKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMTCAE---LYEK-------  230 (297)
T ss_pred             CCcCCCccccceeccCCCCcCccccCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHH---HHHH-------
Confidence            999987643221111  122346999999988889999999999999999997 999996542111   0000       


Q ss_pred             hhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          213 NRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                         ..... ....+...+..+.+++.+||+.+|.+|| ++++++.|
T Consensus       231 ---~~~~~-~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l  272 (297)
T cd05089         231 ---LPQGY-RMEKPRNCDDEVYELMRQCWRDRPYERPPFAQISVQL  272 (297)
T ss_pred             ---HhcCC-CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence               00000 0122334556789999999999999999 99998764

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=100.00  E-value=8.2e-35  Score=244.57  Aligned_cols=233  Identities=17%  Similarity=0.171  Sum_probs=171.4

Q ss_pred             ccccceeeecccCCCC-----Ceeeccch---hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCC
Q 044568            4 TKLSNFYRSSFNARNS-----PWISRVSW---TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGS   75 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~-----~~i~~~~~---~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gs   75 (257)
                      +.++.||+|+......     +++|....   ....+.+  ......+..+.|+|++++.+.+.. ...++++||+++|+
T Consensus        18 G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~--~~e~~~l~~~~~~~i~~~~~~~~~-~~~~l~~~~~~~g~   94 (279)
T cd05109          18 GAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEI--LDEAYVMAGVGSPYVCRLLGICLT-STVQLVTQLMPYGC   94 (279)
T ss_pred             CCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHH--HHHHHHHHhcCCCCCceEEEEEcC-CCcEEEEEcCCCCC
Confidence            5689999998654444     46665432   1111100  001112337789999999988875 45678999999999


Q ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-----cc
Q 044568           76 LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-----VI  150 (257)
Q Consensus        76 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-----~~  150 (257)
                      |.+++.. ....+++.++..++.|++.||.|||++   +++|+||+|+||++++++.+||+|||+++......     ..
T Consensus        95 l~~~l~~-~~~~~~~~~~~~~~~qi~~~L~~lH~~---~iiH~dlkp~Nil~~~~~~~kL~dfG~~~~~~~~~~~~~~~~  170 (279)
T cd05109          95 LLDYVRE-NKDRIGSQDLLNWCVQIAKGMSYLEEV---RLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADG  170 (279)
T ss_pred             HHHHHhh-ccCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccccceEEEcCCCcEEECCCCceeecccccceeecCC
Confidence            9999975 355789999999999999999999999   99999999999999999999999999987543221     11


Q ss_pred             ccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHH
Q 044568          151 DKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKN  229 (257)
Q Consensus       151 ~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (257)
                      ..++..|++||...+..++.++||||||+++||+++ |..||......    ....+..         .. .....+...
T Consensus       171 ~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~----~~~~~~~---------~~-~~~~~~~~~  236 (279)
T cd05109         171 GKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGIPAR----EIPDLLE---------KG-ERLPQPPIC  236 (279)
T ss_pred             CccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHH----HHHHHHH---------CC-CcCCCCccC
Confidence            233457999999988889999999999999999998 89998643111    1111110         00 011122345


Q ss_pred             HHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          230 LENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       230 ~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      +..+.+++.+||+.||++|| +.|+++.|
T Consensus       237 ~~~~~~li~~~l~~dp~~Rp~~~~l~~~l  265 (279)
T cd05109         237 TIDVYMIMVKCWMIDSECRPRFRELVDEF  265 (279)
T ss_pred             CHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            56789999999999999999 99998653

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=100.00  E-value=8.7e-35  Score=243.38  Aligned_cols=228  Identities=20%  Similarity=0.284  Sum_probs=172.0

Q ss_pred             ccccceeeecccCCCC---Ceeeccc----------hhhhHHHHhHhhhccccccc-cCCceeeeceeeeecCceeEEEe
Q 044568            4 TKLSNFYRSSFNARNS---PWISRVS----------WTADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVSGKIER   69 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~---~~i~~~~----------~~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~~lV~E   69 (257)
                      +.++.||+++..++..   .+++...          +.+|++.+.         ++ .|+|++++.+.+...+..++|||
T Consensus         6 g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~---------~l~~h~~iv~~~~~~~~~~~~~lv~e   76 (270)
T cd05047           6 GNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLC---------KLGHHPNIINLLGACEHRGYLYLAIE   76 (270)
T ss_pred             CCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHH---------hhccCCCeeeEEEEEecCCCceEEEE
Confidence            5688999999866543   3454433          123444333         56 69999999999999999999999


Q ss_pred             ecCCCCHHHHHhccC--------------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEE
Q 044568           70 PVRNGSLTDIIFCSA--------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKI  135 (257)
Q Consensus        70 ~~~~gsL~~~l~~~~--------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl  135 (257)
                      |+++|+|.+++....              ...+++.++..++.|++.|++|||++   +++|+||+|+||++++++.+++
T Consensus        77 ~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~---~i~H~dikp~nili~~~~~~kl  153 (270)
T cd05047          77 YAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENYVAKI  153 (270)
T ss_pred             eCCCCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccccceEEEcCCCeEEE
Confidence            999999999996421              13578999999999999999999999   9999999999999999999999


Q ss_pred             eeecccccCCCCc--ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhh
Q 044568          136 LDFGLAKLPNEDF--VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFI  212 (257)
Q Consensus       136 ~dfg~~~~~~~~~--~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~  212 (257)
                      +|||++.......  .....+..|+|||.+....++.++|+||||+++|||++ |..||.......   ....       
T Consensus       154 ~dfgl~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~---~~~~-------  223 (270)
T cd05047         154 ADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAE---LYEK-------  223 (270)
T ss_pred             CCCCCccccchhhhccCCCCccccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCCCccccCHHH---HHHH-------
Confidence            9999875322111  11122456999999988889999999999999999997 999996432111   0000       


Q ss_pred             hhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          213 NRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                         ..... ....+......+.+++.+||+.+|.+|| +.|+++.|
T Consensus       224 ---~~~~~-~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l  265 (270)
T cd05047         224 ---LPQGY-RLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSL  265 (270)
T ss_pred             ---HhCCC-CCCCCCcCCHHHHHHHHHHcccChhhCCCHHHHHHHH
Confidence               00000 0012223456789999999999999999 99998764

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=100.00  E-value=2.5e-35  Score=253.33  Aligned_cols=227  Identities=19%  Similarity=0.173  Sum_probs=173.5

Q ss_pred             ccccceeeecccCCC-CCeeeccchhh-----h-HHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCH
Q 044568            4 TKLSNFYRSSFNARN-SPWISRVSWTA-----D-IEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSL   76 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~-~~~i~~~~~~~-----~-~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL   76 (257)
                      +.++.||+++...++ .+++|...-..     + .+.+.  ........+.|+||+++...+...+..++||||+++|+|
T Consensus         6 G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~--e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~~~L   83 (325)
T cd05602           6 GSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMS--ERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYINGGEL   83 (325)
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHH--HHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCCCCcH
Confidence            578999999976554 46676654211     1 11111  111122367899999999999999999999999999999


Q ss_pred             HHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC---CCcccccC
Q 044568           77 TDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN---EDFVIDKR  153 (257)
Q Consensus        77 ~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~---~~~~~~~~  153 (257)
                      .+++.  ....+++..+..++.|++.||.|||++   +++||||||+||+++.++.++|+|||++....   .......+
T Consensus        84 ~~~~~--~~~~~~~~~~~~~~~qi~~~L~~lH~~---giiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~~~~~~~~~~g  158 (325)
T cd05602          84 FYHLQ--RERCFLEPRARFYAAEIASALGYLHSL---NIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNGTTSTFCG  158 (325)
T ss_pred             HHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEECCCCCEEEccCCCCcccccCCCCcccccC
Confidence            99997  456688889999999999999999999   99999999999999999999999999886422   12234468


Q ss_pred             CCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHH
Q 044568          154 DKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENL  233 (257)
Q Consensus       154 ~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  233 (257)
                      |+.|+|||.+.+..++.++||||+||++|||++|..||.......   .....     ..       .+..........+
T Consensus       159 t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~---~~~~i-----~~-------~~~~~~~~~~~~~  223 (325)
T cd05602         159 TPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAE---MYDNI-----LN-------KPLQLKPNITNSA  223 (325)
T ss_pred             CccccCHHHHcCCCCCCccccccccHHHHHHhcCCCCCCCCCHHH---HHHHH-----Hh-------CCcCCCCCCCHHH
Confidence            899999999998889999999999999999999999997542111   11000     00       0112223445678


Q ss_pred             HHHHHHcccCCCCCCC-hHH
Q 044568          234 VKVGLWCVQDEPALRP-MKC  252 (257)
Q Consensus       234 ~~l~~~cl~~~p~~RP-~~e  252 (257)
                      .+++.+||+.||.+|| +.+
T Consensus       224 ~~li~~~l~~~p~~R~~~~~  243 (325)
T cd05602         224 RHLLEGLLQKDRTKRLGAKD  243 (325)
T ss_pred             HHHHHHHcccCHHHCCCCCC
Confidence            8999999999999999 763

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=100.00  E-value=4.7e-35  Score=255.98  Aligned_cols=224  Identities=12%  Similarity=0.110  Sum_probs=173.0

Q ss_pred             ccccceeeecccC-CCCCeeeccch------------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||+++... +..+++|...-            .+|++.+         ..+.|+|++++.+.+...+..++||||
T Consensus        54 G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il---------~~~~h~~iv~~~~~~~~~~~~~lv~Ey  124 (370)
T cd05596          54 GAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIM---------AHANSEWIVQLHYAFQDDKYLYMVMEY  124 (370)
T ss_pred             CCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHH---------HhCCCCCcceEEEEEecCCEEEEEEcC
Confidence            5688999998765 45567776532            2233333         378899999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc--
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF--  148 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~--  148 (257)
                      +++|+|.+++..   ..++...+..++.|++.||.|||++   +|+||||||+||+++.++.+||+|||++.......  
T Consensus       125 ~~gg~L~~~l~~---~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~~kL~DfG~~~~~~~~~~~  198 (370)
T cd05596         125 MPGGDLVNLMSN---YDIPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLKLADFGTCMKMDANGMV  198 (370)
T ss_pred             CCCCcHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEcCCCCEEEEeccceeeccCCCcc
Confidence            999999999953   4588899999999999999999999   99999999999999999999999999987543221  


Q ss_pred             --ccccCCCCccCcccccCC----CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcC
Q 044568          149 --VIDKRDKGYMAPECYKRT----PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRG  222 (257)
Q Consensus       149 --~~~~~~~~~~aPE~~~~~----~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (257)
                        ....||+.|+|||.+.+.    .++.++|+|||||++|||++|..||.......   .....     ...     ...
T Consensus       199 ~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~---~~~~i-----~~~-----~~~  265 (370)
T cd05596         199 RCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVG---TYSKI-----MDH-----KNS  265 (370)
T ss_pred             cCCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhCCCCcCCCCHHH---HHHHH-----HcC-----CCc
Confidence              234688999999998653    37899999999999999999999997552211   01000     000     000


Q ss_pred             CCCC--HHHHHHHHHHHHHcccCCCCC--CC-hHHHHH
Q 044568          223 TKVD--KKNLENLVKVGLWCVQDEPAL--RP-MKCAVM  255 (257)
Q Consensus       223 ~~~~--~~~~~~l~~l~~~cl~~~p~~--RP-~~ei~~  255 (257)
                      ..++  ......+.+++.+||+.+|.+  || +.|+++
T Consensus       266 ~~~~~~~~~s~~~~~li~~~L~~~p~r~~R~s~~ell~  303 (370)
T cd05596         266 LTFPDDIEISKQAKDLICAFLTDREVRLGRNGVDEIKS  303 (370)
T ss_pred             CCCCCcCCCCHHHHHHHHHHccChhhccCCCCHHHHhc
Confidence            0111  124567889999999999988  99 999864

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=8.6e-35  Score=241.28  Aligned_cols=223  Identities=17%  Similarity=0.290  Sum_probs=170.6

Q ss_pred             ccccceeeecccCCC-----------CCeeeccc--------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCce
Q 044568            4 TKLSNFYRSSFNARN-----------SPWISRVS--------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVS   64 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~-----------~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~   64 (257)
                      +.++.||+|......           .+++|...        +.++++.+         .++.|+|++++.+.+.. ...
T Consensus         6 G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~e~~~l---------~~l~h~~i~~~~~~~~~-~~~   75 (259)
T cd05037           6 GTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRDSLAFFETASLM---------SQLSHKHLVKLYGVCVR-DEN   75 (259)
T ss_pred             cccceEEEEEEeccCCccccCCccceeeeeeccccchhhHHHHHHHHHHH---------HcCCCcchhheeeEEec-CCc
Confidence            457899999987765           23444322        22333333         38899999999999888 788


Q ss_pred             eEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCC-------ceEEee
Q 044568           65 GKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW-------TAKILD  137 (257)
Q Consensus        65 ~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~-------~~kl~d  137 (257)
                      ++||||+++|+|.+++.. ....+++..+..++.|++.||.|||++   +++|+||+|+||+++.++       .++++|
T Consensus        76 ~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dlkp~Nill~~~~~~~~~~~~~kl~D  151 (259)
T cd05037          76 IMVEEYVKFGPLDVFLHR-EKNNVSLHWKLDVAKQLASALHYLEDK---KLVHGNVCGKNILVARYGLNEGYVPFIKLSD  151 (259)
T ss_pred             EEEEEcCCCCcHHHHHHh-hccCCCHHHHHHHHHHHHHHHHHHhhC---CeecccCccceEEEecCccccCCceeEEeCC
Confidence            999999999999999975 334789999999999999999999999   999999999999999887       799999


Q ss_pred             ecccccCCCCcccccCCCCccCcccccCC--CCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhh
Q 044568          138 FGLAKLPNEDFVIDKRDKGYMAPECYKRT--PISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINR  214 (257)
Q Consensus       138 fg~~~~~~~~~~~~~~~~~~~aPE~~~~~--~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~  214 (257)
                      ||++..... .....++..|+|||.+...  .++.++|+||||+++||+++ |..||........    ..+    +.  
T Consensus       152 fg~a~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~~~~~~~~----~~~----~~--  220 (259)
T cd05037         152 PGIPITVLS-REERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGEEPLSTLSSSEK----ERF----YQ--  220 (259)
T ss_pred             CCccccccc-ccccccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCCcccCCchhH----HHH----Hh--
Confidence            999875433 2334456779999999876  68899999999999999999 5777754421110    000    00  


Q ss_pred             hhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          215 ELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                            .....+......+.+++.+||+.+|.+|| +.|+++.|
T Consensus       221 ------~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l  258 (259)
T cd05037         221 ------DQHRLPMPDCAELANLINQCWTYDPTKRPSFRAILRDL  258 (259)
T ss_pred             ------cCCCCCCCCchHHHHHHHHHhccChhhCCCHHHHHHhc
Confidence                  00111111226789999999999999999 99999875

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=100.00  E-value=1.2e-34  Score=241.77  Aligned_cols=231  Identities=16%  Similarity=0.209  Sum_probs=178.9

Q ss_pred             ccccceeeecc-cCCCCCeeeccc------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSF-NARNSPWISRVS------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~-~~~~~~~i~~~~------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||++.. .+++.+++|...            +.+|++.+.         .+.|+|++++.+.+...+..++||||
T Consensus        13 g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~---------~~~h~~i~~~~~~~~~~~~~~~v~e~   83 (267)
T cd08229          13 GQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLK---------QLNHPNVIKYYASFIEDNELNIVLEL   83 (267)
T ss_pred             cCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHH---------HccCCchhhhhheeEeCCeEEEEEEe
Confidence            46789999995 466777777543            122333333         78899999999999999999999999


Q ss_pred             cCCCCHHHHHhcc--CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc
Q 044568           71 VRNGSLTDIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF  148 (257)
Q Consensus        71 ~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~  148 (257)
                      +++++|.+++...  ....+++.++..++.|++.|+.|||++   +++|+||+|+||+++.++.++++|||.+.......
T Consensus        84 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~  160 (267)
T cd08229          84 ADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKT  160 (267)
T ss_pred             cCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEECcchhhhccccCC
Confidence            9999999998632  345689999999999999999999999   99999999999999999999999999876543221


Q ss_pred             ---ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCC
Q 044568          149 ---VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKV  225 (257)
Q Consensus       149 ---~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (257)
                         ....++..|+|||.+.+..++.++|+||||+++|+|++|..||.........     ..      ........+...
T Consensus       161 ~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~-----~~------~~~~~~~~~~~~  229 (267)
T cd08229         161 TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYS-----LC------KKIEQCDYPPLP  229 (267)
T ss_pred             cccccccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHHhCCCCcccccchHHH-----Hh------hhhhcCCCCCCC
Confidence               2345777899999998888899999999999999999999999654221110     00      011111111122


Q ss_pred             CHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          226 DKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       226 ~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      .....+.+.+++.+||+.+|++|| +.+|++.+
T Consensus       230 ~~~~~~~~~~li~~~l~~~p~~Rpt~~~i~~~~  262 (267)
T cd08229         230 SDHYSEELRQLVNMCINPDPEKRPDITYVYDVA  262 (267)
T ss_pred             cccccHHHHHHHHHhcCCCcccCCCHHHHHHHH
Confidence            234567899999999999999999 99887753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=100.00  E-value=8.2e-35  Score=247.66  Aligned_cols=229  Identities=18%  Similarity=0.235  Sum_probs=174.0

Q ss_pred             ccccceeeeccc------CCCCCeeeccc----------hhhhHHHHhHhhhccccccc-cCCceeeeceeeeecCceeE
Q 044568            4 TKLSNFYRSSFN------ARNSPWISRVS----------WTADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVSGK   66 (257)
Q Consensus         4 ~~~~~~y~~~~~------~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~~l   66 (257)
                      +.++.||+++..      .+..+++|...          +.+|++.+.         ++ .|+|++++.+.+...+..++
T Consensus        46 G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~---------~l~~h~~iv~~~~~~~~~~~~~l  116 (302)
T cd05055          46 GAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMS---------HLGNHENIVNLLGACTIGGPILV  116 (302)
T ss_pred             cCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHH---------hccCCCCcceEEEEEecCCceEE
Confidence            567889988742      22235555332          233444444         67 69999999999999999999


Q ss_pred             EEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC
Q 044568           67 IERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE  146 (257)
Q Consensus        67 V~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~  146 (257)
                      ||||+++|+|.+++.......+++.+...++.|++.||.|||++   +++|+||+|+||+++.++.++++|||.+.....
T Consensus       117 v~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~  193 (302)
T cd05055         117 ITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNVLLTHGKIVKICDFGLARDIMN  193 (302)
T ss_pred             EEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeehhhhccceEEEcCCCeEEECCCcccccccC
Confidence            99999999999999753444589999999999999999999999   999999999999999999999999999875432


Q ss_pred             Cc-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhh
Q 044568          147 DF-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLV  220 (257)
Q Consensus       147 ~~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (257)
                      ..     ....++..|+|||.+.+..++.++||||+|+++||+++ |..||........   ......         ...
T Consensus       194 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~~~~~---~~~~~~---------~~~  261 (302)
T cd05055         194 DSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMPVDSK---FYKLIK---------EGY  261 (302)
T ss_pred             CCceeecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCCchHH---HHHHHH---------cCC
Confidence            21     11234567999999988889999999999999999998 9999875422111   101000         000


Q ss_pred             cCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          221 RGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       221 ~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      . ...+...++.+.+++.+||+.+|++|| +.|+++.|
T Consensus       262 ~-~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ell~~l  298 (302)
T cd05055         262 R-MAQPEHAPAEIYDIMKTCWDADPLKRPTFKQIVQLI  298 (302)
T ss_pred             c-CCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHH
Confidence            0 011223356789999999999999999 99998764

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=100.00  E-value=7.5e-35  Score=246.05  Aligned_cols=228  Identities=17%  Similarity=0.224  Sum_probs=173.0

Q ss_pred             ccccceeeecccC------CCCCeeeccc---------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEE
Q 044568            4 TKLSNFYRSSFNA------RNSPWISRVS---------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIE   68 (257)
Q Consensus         4 ~~~~~~y~~~~~~------~~~~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~   68 (257)
                      +.++.||+++...      ....++|...         +.+|++.+.         ++.|+|++++.+.+...+..++||
T Consensus        16 G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~---------~l~h~~i~~~~~~~~~~~~~~lv~   86 (288)
T cd05093          16 GAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLT---------NLQHEHIVKFYGVCVEGDPLIMVF   86 (288)
T ss_pred             cCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHH---------hCCCCCcceEEEEEecCCccEEEE
Confidence            4578999987422      2234555543         233444444         889999999999999999999999


Q ss_pred             eecCCCCHHHHHhccC-----------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEee
Q 044568           69 RPVRNGSLTDIIFCSA-----------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILD  137 (257)
Q Consensus        69 E~~~~gsL~~~l~~~~-----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d  137 (257)
                      ||+++++|.+++....           ...+++.++..++.|++.||.|||++   +++||||+|+||++++++.++|+|
T Consensus        87 e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~---~i~H~dlkp~Nili~~~~~~kl~d  163 (288)
T cd05093          87 EYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENLLVKIGD  163 (288)
T ss_pred             EcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccCcceEEEccCCcEEecc
Confidence            9999999999997421           23589999999999999999999999   999999999999999999999999


Q ss_pred             ecccccCCCCc-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhh
Q 044568          138 FGLAKLPNEDF-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCF  211 (257)
Q Consensus       138 fg~~~~~~~~~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~  211 (257)
                      ||.+.......     ....++..|+|||.+.+..++.++|+||||+++|||++ |..||.......   .....     
T Consensus       164 fg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~~~~---~~~~i-----  235 (288)
T cd05093         164 FGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNE---VIECI-----  235 (288)
T ss_pred             CCccccccCCceeecCCCCCccccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH---HHHHH-----
Confidence            99987443221     12223557999999988889999999999999999998 899986442111   11100     


Q ss_pred             hhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          212 INRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      .....      ...+...+..+.+++.+||+.||.+|| +.|+++.|
T Consensus       236 ~~~~~------~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~v~~~l  276 (288)
T cd05093         236 TQGRV------LQRPRTCPKEVYDLMLGCWQREPHMRLNIKEIHSLL  276 (288)
T ss_pred             HcCCc------CCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHH
Confidence            00000      011223446799999999999999999 99997754

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=100.00  E-value=1e-34  Score=242.81  Aligned_cols=235  Identities=18%  Similarity=0.216  Sum_probs=171.4

Q ss_pred             ccccceeeecccCCCC---Ceeeccch----hhhHHHHhHhhhccccccccCCceeeeceeeeec------CceeEEEee
Q 044568            4 TKLSNFYRSSFNARNS---PWISRVSW----TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT------SVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~---~~i~~~~~----~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~------~~~~lV~E~   70 (257)
                      +.++.||+|+..+...   +++|....    ..+.+.+.  .....+..++|+|++++.+.+...      ...++||||
T Consensus        10 G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~--~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~   87 (272)
T cd05075          10 GEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFL--SEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSPVVILPF   87 (272)
T ss_pred             ccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHH--HHHHHHHhCCCCCcceEEEEEccCCcccCCCCcEEEEEe
Confidence            4688999999877664   56664321    11111111  111123378899999999876432      356899999


Q ss_pred             cCCCCHHHHHhcc----CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC
Q 044568           71 VRNGSLTDIIFCS----AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE  146 (257)
Q Consensus        71 ~~~gsL~~~l~~~----~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~  146 (257)
                      +++|+|.+++...    ....+++.....++.|++.||.|||++   +++|+||||+||+++.++.++++|||++.....
T Consensus        88 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  164 (272)
T cd05075          88 MKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSK---SFIHRDLAARNCMLNENMNVCVADFGLSKKIYN  164 (272)
T ss_pred             CCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHC---CeeccccchhheEEcCCCCEEECCCCcccccCc
Confidence            9999999988421    234589999999999999999999999   999999999999999999999999999875432


Q ss_pred             Cc-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhh
Q 044568          147 DF-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLV  220 (257)
Q Consensus       147 ~~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (257)
                      ..     .....++.|++||.+.+..++.++|+||||+++||+++ |..||......  . ...     ......     
T Consensus       165 ~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~--~-~~~-----~~~~~~-----  231 (272)
T cd05075         165 GDYYRQGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVENS--E-IYD-----YLRQGN-----  231 (272)
T ss_pred             ccceecCCcccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCCCCHH--H-HHH-----HHHcCC-----
Confidence            21     22234557999999998889999999999999999999 78898643111  0 000     000000     


Q ss_pred             cCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          221 RGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       221 ~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                       ....+...+..+.+++.+||+.+|++|| +.|+++.|
T Consensus       232 -~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l  268 (272)
T cd05075         232 -RLKQPPDCLDGLYSLMSSCWLLNPKDRPSFETLRCEL  268 (272)
T ss_pred             -CCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHH
Confidence             0012234456789999999999999999 99998764

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=100.00  E-value=4.3e-35  Score=252.49  Aligned_cols=222  Identities=15%  Similarity=0.139  Sum_probs=170.0

Q ss_pred             ccccceeeecc----cCCCCCeeeccch-------------hhhHHHHhHhhhccccccc-cCCceeeeceeeeecCcee
Q 044568            4 TKLSNFYRSSF----NARNSPWISRVSW-------------TADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVSG   65 (257)
Q Consensus         4 ~~~~~~y~~~~----~~~~~~~i~~~~~-------------~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~~   65 (257)
                      +.++.||+++.    .++..+++|....             .+|++.+.         ++ .|++++.+...+...+..+
T Consensus        11 G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~---------~l~~~~~i~~~~~~~~~~~~~~   81 (332)
T cd05614          11 GAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLE---------HVRQSPFLVTLHYAFQTEAKLH   81 (332)
T ss_pred             cCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHH---------hccCCCCcccEEEEEecCCEEE
Confidence            56889998775    3456667775432             12222222         45 4899999999999999999


Q ss_pred             EEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC
Q 044568           66 KIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN  145 (257)
Q Consensus        66 lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~  145 (257)
                      +||||+++|+|.+++.  ....+++.++..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++....
T Consensus        82 lv~e~~~~g~L~~~l~--~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivHrDlkp~Nili~~~~~~kl~DfG~~~~~~  156 (332)
T cd05614          82 LILDYVSGGEMFTHLY--QRDNFSEDEVRFYSGEIILALEHLHKL---GIVYRDIKLENILLDSEGHVVLTDFGLSKEFL  156 (332)
T ss_pred             EEEeCCCCCcHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHC---CcEecCCCHHHeEECCCCCEEEeeCcCCcccc
Confidence            9999999999999997  456789999999999999999999999   99999999999999999999999999986432


Q ss_pred             C----CcccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhh
Q 044568          146 E----DFVIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLV  220 (257)
Q Consensus       146 ~----~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (257)
                      .    ......||..|+|||.+.+. .++.++|||||||++|||++|+.||..............            ...
T Consensus       157 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~------------~~~  224 (332)
T cd05614         157 SEEKERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLEGERNTQSEVSR------------RIL  224 (332)
T ss_pred             ccCCCccccccCCccccCHHHhcCCCCCCCccccccchhhhhhhhcCCCCCCCCCCCCCHHHHHH------------HHh
Confidence            1    12334688999999998765 478899999999999999999999975432221111110            011


Q ss_pred             c-CCCCCHHHHHHHHHHHHHcccCCCCCCC-hH
Q 044568          221 R-GTKVDKKNLENLVKVGLWCVQDEPALRP-MK  251 (257)
Q Consensus       221 ~-~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~  251 (257)
                      . ....+......+.+++.+||+.||++|| +.
T Consensus       225 ~~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~  257 (332)
T cd05614         225 KCDPPFPSFIGPEAQDLLHKLLRKDPKKRLGAG  257 (332)
T ss_pred             cCCCCCCCCCCHHHHHHHHHHcCCCHHHcCCCC
Confidence            1 1123334556788999999999999999 54

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=6.4e-35  Score=283.15  Aligned_cols=236  Identities=18%  Similarity=0.373  Sum_probs=182.2

Q ss_pred             ccccceeeecc-cCCCCCeeeccch-----hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHH
Q 044568            4 TKLSNFYRSSF-NARNSPWISRVSW-----TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLT   77 (257)
Q Consensus         4 ~~~~~~y~~~~-~~~~~~~i~~~~~-----~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~   77 (257)
                      +.++.||+|+. .++..+++|+...     ..+++.+.         +++|+||+++.+++...+..++||||+++|+|.
T Consensus       701 G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~l~---------~l~HpnIv~~~~~~~~~~~~~lv~Ey~~~g~L~  771 (968)
T PLN00113        701 GKKGASYKGKSIKNGMQFVVKEINDVNSIPSSEIADMG---------KLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLS  771 (968)
T ss_pred             CCCeeEEEEEECCCCcEEEEEEccCCccccHHHHHHHh---------hCCCCCcceEEEEEEcCCCCEEEEeCCCCCcHH
Confidence            56889999996 5677788887653     23333333         889999999999999999999999999999999


Q ss_pred             HHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcccccCCCCc
Q 044568           78 DIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGY  157 (257)
Q Consensus        78 ~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~  157 (257)
                      ++++.     ++|.++..++.|++.|++|||..+.++++|||+||+||+++.+...++. ++....... .....++..|
T Consensus       772 ~~l~~-----l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~~-~~~~~~~~~-~~~~~~t~~y  844 (968)
T PLN00113        772 EVLRN-----LSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGLLCT-DTKCFISSAY  844 (968)
T ss_pred             HHHhc-----CCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEEE-ecccccccc-CCCccccccc
Confidence            99963     8999999999999999999995444499999999999999998888774 555432211 1233667889


Q ss_pred             cCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC-----CCCHHHHHH
Q 044568          158 MAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT-----KVDKKNLEN  232 (257)
Q Consensus       158 ~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  232 (257)
                      +|||++.+..++.++|||||||++|||++|+.||+.....  ......|.............+++.     ..+.+...+
T Consensus       845 ~aPE~~~~~~~~~~sDv~S~Gvvl~el~tg~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  922 (968)
T PLN00113        845 VAPETRETKDITEKSDIYGFGLILIELLTGKSPADAEFGV--HGSIVEWARYCYSDCHLDMWIDPSIRGDVSVNQNEIVE  922 (968)
T ss_pred             cCcccccCCCCCcccchhhHHHHHHHHHhCCCCCCcccCC--CCcHHHHHHHhcCccchhheeCccccCCCCccHHHHHH
Confidence            9999999889999999999999999999999999643222  122334443333222233333322     344566778


Q ss_pred             HHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          233 LVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       233 l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      +.+++.+||+.||++|| |+|+++.|
T Consensus       923 ~~~l~~~Cl~~~P~~RPt~~evl~~L  948 (968)
T PLN00113        923 VMNLALHCTATDPTARPCANDVLKTL  948 (968)
T ss_pred             HHHHHHhhCcCCchhCcCHHHHHHHH
Confidence            89999999999999999 99999865

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.3e-34  Score=240.76  Aligned_cols=228  Identities=22%  Similarity=0.335  Sum_probs=179.4

Q ss_pred             ccccceeeecccCCCCCeeeccc--------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS--------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGS   75 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gs   75 (257)
                      +.++.||++...++..+++|...        +.+|++.+.         ++.|+|++++.+.+......++||||+++++
T Consensus        17 g~~~~v~~~~~~~~~~~~vK~~~~~~~~~~~~~~e~~~l~---------~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~   87 (261)
T cd05034          17 GQFGEVWMGTWNGTTKVAVKTLKPGTMSPEAFLQEAQIMK---------KLRHDKLVQLYAVCSEEEPIYIVTEYMSKGS   87 (261)
T ss_pred             CcceEEEEEEEcCCceEEEEEecCCccCHHHHHHHHHHHh---------hCCCCCEeeeeeeeecCCceEEEEeccCCCC
Confidence            56889999998877777777554        234444444         7889999999999998899999999999999


Q ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc----ccc
Q 044568           76 LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF----VID  151 (257)
Q Consensus        76 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~----~~~  151 (257)
                      |.+++.......+++.++..++.|++.|+.|||++   +++|+||+|+||+++.++.++++|||.+.......    ...
T Consensus        88 L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~~---~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~  164 (261)
T cd05034          88 LLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESR---NYIHRDLAARNILVGENLVCKIADFGLARLIEDDEYTAREGA  164 (261)
T ss_pred             HHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCcchheEEEcCCCCEEECccccceeccchhhhhhhcc
Confidence            99999864456799999999999999999999999   99999999999999999999999999887543221    112


Q ss_pred             cCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHH
Q 044568          152 KRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNL  230 (257)
Q Consensus       152 ~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (257)
                      ..+..|+|||.+.+..++.++|+||+|+++||+++ |+.||....   ........          ..... ...+...+
T Consensus       165 ~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~---~~~~~~~~----------~~~~~-~~~~~~~~  230 (261)
T cd05034         165 KFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGMT---NREVLEQV----------ERGYR-MPRPPNCP  230 (261)
T ss_pred             CCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCC---HHHHHHHH----------HcCCC-CCCCCCCC
Confidence            23456999999988889999999999999999999 999996431   11111111          00000 11223345


Q ss_pred             HHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          231 ENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       231 ~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ..+.+++.+||+.+|++|| ++|+.+.|
T Consensus       231 ~~~~~~i~~~l~~~p~~Rp~~~~l~~~l  258 (261)
T cd05034         231 EELYDLMLQCWDKDPEERPTFEYLQSFL  258 (261)
T ss_pred             HHHHHHHHHHcccCcccCCCHHHHHHHH
Confidence            6789999999999999999 99998764

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=100.00  E-value=8.5e-35  Score=242.87  Aligned_cols=229  Identities=17%  Similarity=0.224  Sum_probs=174.5

Q ss_pred             cccccceeeecccCCC-------CCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCcee
Q 044568            3 CTKLSNFYRSSFNARN-------SPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSG   65 (257)
Q Consensus         3 ~~~~~~~y~~~~~~~~-------~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~   65 (257)
                      .+.++.||+++..+..       .+++|...          +.++++.+         .++.|+|++++.+.+...+..+
T Consensus         5 ~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l---------~~l~h~~i~~~~~~~~~~~~~~   75 (269)
T cd05044           5 SGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLM---------SNFNHPNIVKLLGVCLLNEPQY   75 (269)
T ss_pred             cccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHH---------HhcCCCCeeeEeeeecCCCCeE
Confidence            3578899999976533       34554432          22333333         3889999999999999999999


Q ss_pred             EEEeecCCCCHHHHHhccC-----CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCC-----ceEE
Q 044568           66 KIERPVRNGSLTDIIFCSA-----ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW-----TAKI  135 (257)
Q Consensus        66 lV~E~~~~gsL~~~l~~~~-----~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~-----~~kl  135 (257)
                      +||||+++|+|.+++....     ...+++.++..++.|++.|+.|||++   +++|+|++|+||+++.+.     .+++
T Consensus        76 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~~~~~~l  152 (269)
T cd05044          76 IIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQM---HFIHRDLAARNCLVSEKGYDADRVVKI  152 (269)
T ss_pred             EEEeccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhC---CcccCCCChheEEEecCCCCCCcceEE
Confidence            9999999999999997432     23478899999999999999999999   999999999999999877     8999


Q ss_pred             eeecccccCCCCc-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHH
Q 044568          136 LDFGLAKLPNEDF-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYK  209 (257)
Q Consensus       136 ~dfg~~~~~~~~~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~  209 (257)
                      +|||++.......     ....++..|+|||.+.+..++.++|+||||+++|||++ |..||......    ......  
T Consensus       153 ~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~~~----~~~~~~--  226 (269)
T cd05044         153 GDFGLARDIYKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALNNQ----EVLQHV--  226 (269)
T ss_pred             CCcccccccccccccccCcccCCCccccCHHHHccCCcccchhHHHHHHHHHHHHHcCCCCCcccCHH----HHHHHH--
Confidence            9999886432211     12234567999999998889999999999999999998 99999643211    110000  


Q ss_pred             hhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          210 CFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                        ..      -.....+...+..+.+++.+||+.+|.+|| +.++++.|
T Consensus       227 --~~------~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l  267 (269)
T cd05044         227 --TA------GGRLQKPENCPDKIYQLMTNCWAQDPSERPTFDRIQEIL  267 (269)
T ss_pred             --hc------CCccCCcccchHHHHHHHHHHcCCCcccCCCHHHHHHHH
Confidence              00      001122344567889999999999999999 99998865

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=100.00  E-value=3.6e-35  Score=251.90  Aligned_cols=228  Identities=19%  Similarity=0.149  Sum_probs=173.1

Q ss_pred             ccccceeeecccC-CCCCeeeccchhhh---HHHHhH-hhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHH
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSWTAD---IEVLSV-AMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTD   78 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~~~~---~~~~~~-~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~   78 (257)
                      +.++.||+++... +..+++|...-...   .+.... .........+.|+|++++...+...+..++||||+++|+|.+
T Consensus         6 G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~   85 (321)
T cd05603           6 GSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNGGELFF   85 (321)
T ss_pred             CCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCCCCCHHH
Confidence            5688999999764 45567776542111   000000 111112347889999999999999999999999999999999


Q ss_pred             HHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC---CCcccccCCC
Q 044568           79 IIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN---EDFVIDKRDK  155 (257)
Q Consensus        79 ~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~---~~~~~~~~~~  155 (257)
                      .+.  ....+++.++..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++....   .......+++
T Consensus        86 ~l~--~~~~~~~~~~~~~~~qi~~~L~~lH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~  160 (321)
T cd05603          86 HLQ--RERCFLEPRARFYAAEVASAIGYLHSL---NIIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPEETTSTFCGTP  160 (321)
T ss_pred             HHH--HcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeEECCCCCEEEccCCCCccCCCCCCccccccCCc
Confidence            987  456788899999999999999999999   99999999999999999999999999876421   1123346788


Q ss_pred             CccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHH
Q 044568          156 GYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVK  235 (257)
Q Consensus       156 ~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  235 (257)
                      .|+|||.+.+..++.++|+|||||++|||++|..||.....   .......            ...+...+......+.+
T Consensus       161 ~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~---~~~~~~i------------~~~~~~~~~~~~~~~~~  225 (321)
T cd05603         161 EYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRDV---SQMYDNI------------LHKPLQLPGGKTVAACD  225 (321)
T ss_pred             ccCCHHHhcCCCCCCcCcccccchhhhhhhcCCCCCCCCCH---HHHHHHH------------hcCCCCCCCCCCHHHHH
Confidence            99999999988899999999999999999999999975421   1000000            00111233445567899


Q ss_pred             HHHHcccCCCCCCC-hH
Q 044568          236 VGLWCVQDEPALRP-MK  251 (257)
Q Consensus       236 l~~~cl~~~p~~RP-~~  251 (257)
                      ++.+||+.||.+|| +.
T Consensus       226 li~~~l~~~p~~R~~~~  242 (321)
T cd05603         226 LLVGLLHKDQRRRLGAK  242 (321)
T ss_pred             HHHHHccCCHhhcCCCC
Confidence            99999999999999 53

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=100.00  E-value=1.1e-34  Score=243.60  Aligned_cols=234  Identities=17%  Similarity=0.168  Sum_probs=173.3

Q ss_pred             ccccceeeecccC------CCCCeeeccchh----hhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCC
Q 044568            4 TKLSNFYRSSFNA------RNSPWISRVSWT----ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRN   73 (257)
Q Consensus         4 ~~~~~~y~~~~~~------~~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~   73 (257)
                      +.++.||++....      ...+++|.....    .+..++.   .-..+.++.|+|++++.+.+...+..++||||+++
T Consensus        17 g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~---e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~g   93 (277)
T cd05036          17 GAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLM---EALIMSKFNHQNIVRLIGVSFERLPRFILLELMAG   93 (277)
T ss_pred             CCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHH---HHHHHHhCCCCCEeeEEEEEccCCCcEEEEecCCC
Confidence            4578899998765      344566654421    1111111   11133488999999999999999999999999999


Q ss_pred             CCHHHHHhccC-----CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCC---ceEEeeecccccCC
Q 044568           74 GSLTDIIFCSA-----ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW---TAKILDFGLAKLPN  145 (257)
Q Consensus        74 gsL~~~l~~~~-----~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~---~~kl~dfg~~~~~~  145 (257)
                      ++|.+++....     ...+++.++..++.|++.|+.|||++   +++|+||+|+||+++.++   .++|+|||+++...
T Consensus        94 ~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~nil~~~~~~~~~~kl~dfg~~~~~~  170 (277)
T cd05036          94 GDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEEN---HFIHRDIAARNCLLTCKGPGRVAKIADFGMARDIY  170 (277)
T ss_pred             CCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccchheEEEeccCCCcceEeccCccccccC
Confidence            99999997532     13589999999999999999999999   999999999999998654   58999999987543


Q ss_pred             CCcc-----cccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhh
Q 044568          146 EDFV-----IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKL  219 (257)
Q Consensus       146 ~~~~-----~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (257)
                      ....     ....+..|+|||.+.+..++.++|||||||++|||++ |..||.......    ...   .....      
T Consensus       171 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~~~~~~----~~~---~~~~~------  237 (277)
T cd05036         171 RASYYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRTNQE----VME---FVTGG------  237 (277)
T ss_pred             CccceecCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHHH----HHH---HHHcC------
Confidence            2211     1122356999999988889999999999999999997 999997542111    000   00000      


Q ss_pred             hcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          220 VRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       220 ~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                       .....+...+..+.+++.+||+.+|++|| +.++++.|
T Consensus       238 -~~~~~~~~~~~~~~~~i~~cl~~~p~~Rps~~~vl~~l  275 (277)
T cd05036         238 -GRLDPPKGCPGPVYRIMTDCWQHTPEDRPNFATILERI  275 (277)
T ss_pred             -CcCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHh
Confidence             01122334557889999999999999999 99999865

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=100.00  E-value=1e-34  Score=243.72  Aligned_cols=228  Identities=18%  Similarity=0.229  Sum_probs=171.7

Q ss_pred             ccccceeeecccC------CCCCeeeccch----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEE
Q 044568            4 TKLSNFYRSSFNA------RNSPWISRVSW----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~~~------~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV   67 (257)
                      +.++.||++....      +..+++|....          .+|++.         +..++|+|++++.+.+...+..++|
T Consensus        17 G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~---------l~~l~~~~iv~~~~~~~~~~~~~lv   87 (277)
T cd05062          17 GSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASV---------MKEFNCHHVVRLLGVVSQGQPTLVI   87 (277)
T ss_pred             ccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHH---------HHhCCCCCeeeEEEEEcCCCCeEEE
Confidence            4578899876432      23466665431          223333         3378899999999999999999999


Q ss_pred             EeecCCCCHHHHHhccC--------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeec
Q 044568           68 ERPVRNGSLTDIIFCSA--------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFG  139 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg  139 (257)
                      |||+++|+|.+++....        ...+++..+..++.|++.||.|||++   +++|+||+|+||++++++.++|+|||
T Consensus        88 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~~vH~dlkp~Nil~~~~~~~~l~dfg  164 (277)
T cd05062          88 MELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFG  164 (277)
T ss_pred             EecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCcchheEEEcCCCCEEECCCC
Confidence            99999999999996421        12467788899999999999999999   99999999999999999999999999


Q ss_pred             ccccCCCCc-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhh
Q 044568          140 LAKLPNEDF-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFIN  213 (257)
Q Consensus       140 ~~~~~~~~~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~  213 (257)
                      ++.......     ....++..|+|||.+.+..++.++|+||||+++||+++ |..||......   ......     ..
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~~~~---~~~~~~-----~~  236 (277)
T cd05062         165 MTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGMSNE---QVLRFV-----ME  236 (277)
T ss_pred             CccccCCcceeecCCCCccCHhhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHH---HHHHHH-----Hc
Confidence            886433222     11233567999999988889999999999999999999 78888644211   111000     00


Q ss_pred             hhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          214 RELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ..      ....+...+..+.+++.+||+.+|++|| +.|+++.|
T Consensus       237 ~~------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l  275 (277)
T cd05062         237 GG------LLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSI  275 (277)
T ss_pred             CC------cCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHh
Confidence            00      0122334556799999999999999999 99999865

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=100.00  E-value=1.1e-34  Score=245.31  Aligned_cols=228  Identities=19%  Similarity=0.239  Sum_probs=173.4

Q ss_pred             ccccceeeecccCC------CCCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEE
Q 044568            4 TKLSNFYRSSFNAR------NSPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~~~~------~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV   67 (257)
                      +.++.||+|.....      ..+++|...          +.+|++.+.         .+.|+|++++.+.+...+..++|
T Consensus        11 g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~~~~~~~lv   81 (290)
T cd05045          11 GEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLK---------QVNHPHVIKLYGACSQDGPLLLI   81 (290)
T ss_pred             cCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHh---------hCCCCCEeeEEEEEecCCCcEEE
Confidence            46789999985431      234555432          233444444         78899999999999999999999


Q ss_pred             EeecCCCCHHHHHhcc----------------------CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCce
Q 044568           68 ERPVRNGSLTDIIFCS----------------------AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNI  125 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~----------------------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~ni  125 (257)
                      |||+.+|+|.+++...                      ....+++.++..++.|++.||.|||++   +++|+||+|+||
T Consensus        82 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~---~ivH~dikp~ni  158 (290)
T cd05045          82 VEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEM---KLVHRDLAARNV  158 (290)
T ss_pred             EEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHHC---CeehhhhhhheE
Confidence            9999999999998642                      123578899999999999999999999   999999999999


Q ss_pred             eeCCCCceEEeeecccccCCCCc-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChh
Q 044568          126 LMDEFWTAKILDFGLAKLPNEDF-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPE  199 (257)
Q Consensus       126 l~~~~~~~kl~dfg~~~~~~~~~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~  199 (257)
                      ++++++.++|+|||.++......     ....++..|+|||.+.+..++.++||||||+++|||++ |..||......  
T Consensus       159 ll~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~--  236 (290)
T cd05045         159 LVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIAPE--  236 (290)
T ss_pred             EEcCCCcEEeccccccccccCccchhcccCCCCCccccCHHHHccCCcchHhHHHHHHHHHHHHHhcCCCCCCCCCHH--
Confidence            99999999999999986432211     12234567999999988889999999999999999998 99999644111  


Q ss_pred             hHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          200 EIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                        .+.....         .... ...+......+.+++.+||+.+|++|| ++|+++.|
T Consensus       237 --~~~~~~~---------~~~~-~~~~~~~~~~~~~~i~~cl~~~P~~Rp~~~~i~~~l  283 (290)
T cd05045         237 --RLFNLLK---------TGYR-MERPENCSEEMYNLMLTCWKQEPDKRPTFADISKEL  283 (290)
T ss_pred             --HHHHHHh---------CCCC-CCCCCCCCHHHHHHHHHHccCCcccCCCHHHHHHHH
Confidence              1111100         0000 112334557899999999999999999 99998864

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=100.00  E-value=1.1e-34  Score=240.28  Aligned_cols=227  Identities=20%  Similarity=0.207  Sum_probs=178.8

Q ss_pred             ccccceeeecccC-CCCCeeeccc-------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCC
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS-------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGS   75 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~-------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gs   75 (257)
                      +.++.+|++.... +..+++|...       +.+|++.+.         ++.|+|++++.+.+...+..++++||+++++
T Consensus        14 g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~e~~~~~---------~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~   84 (256)
T cd06612          14 GSYGSVYKAIHKETGQVVAIKVVPVEEDLQEIIKEISILK---------QCDSPYIVKYYGSYFKNTDLWIVMEYCGAGS   84 (256)
T ss_pred             CCCeEEEEEEEcCCCcEEEEEEeecHHHHHHHHHHHHHHH---------hCCCCcEeeeeeeeecCCcEEEEEecCCCCc
Confidence            4678999999876 4556666654       334444444         7799999999999999999999999999999


Q ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc---cccc
Q 044568           76 LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF---VIDK  152 (257)
Q Consensus        76 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~---~~~~  152 (257)
                      |.+++.. ....+++..+..++.|++.|+.|||+.   +++|+|++|.||+++.++.++|+|||++.......   ....
T Consensus        85 L~~~l~~-~~~~l~~~~~~~~~~~l~~~l~~lh~~---~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~  160 (256)
T cd06612          85 VSDIMKI-TNKTLTEEEIAAILYQTLKGLEYLHSN---KKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMAKRNTVI  160 (256)
T ss_pred             HHHHHHh-CccCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEECCCCcEEEcccccchhcccCcccccccc
Confidence            9999975 456789999999999999999999999   99999999999999999999999999887543322   2334


Q ss_pred             CCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHH
Q 044568          153 RDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLEN  232 (257)
Q Consensus       153 ~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (257)
                      ++..|+|||.+.+..++.++|+||||+++|+|++|+.||.............            .........+......
T Consensus       161 ~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~  228 (256)
T cd06612         161 GTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHPMRAIFMIP------------NKPPPTLSDPEKWSPE  228 (256)
T ss_pred             CCccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcchhhhhhhhc------------cCCCCCCCchhhcCHH
Confidence            6778999999988889999999999999999999999997542211100000            0000111223334567


Q ss_pred             HHHHHHHcccCCCCCCC-hHHHHH
Q 044568          233 LVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       233 l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +.+++.+||+.+|++|| +.|+++
T Consensus       229 ~~~~i~~~l~~~P~~Rps~~~il~  252 (256)
T cd06612         229 FNDFVKKCLVKDPEERPSAIQLLQ  252 (256)
T ss_pred             HHHHHHHHHhcChhhCcCHHHHhc
Confidence            89999999999999999 999985

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=100.00  E-value=2.2e-35  Score=253.73  Aligned_cols=227  Identities=18%  Similarity=0.141  Sum_probs=172.7

Q ss_pred             ccccceeeeccc-CCCCCeeeccchh-----hhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHH
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSWT-----ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLT   77 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~   77 (257)
                      +.++.||+++.. ++..+++|...-.     .+.+.+. ......+..+.|+|++++...+...+..++||||+++|+|.
T Consensus         6 G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~-~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~   84 (325)
T cd05604           6 GSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIM-AERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNGGELF   84 (325)
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHH-HHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCCCCCHH
Confidence            568899999865 4556677765421     1111111 11111233688999999999999999999999999999999


Q ss_pred             HHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC---CCcccccCC
Q 044568           78 DIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN---EDFVIDKRD  154 (257)
Q Consensus        78 ~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~---~~~~~~~~~  154 (257)
                      +++.  ....+++.++..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++....   .......++
T Consensus        85 ~~l~--~~~~~~~~~~~~~~~qi~~al~~lH~~---givH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt  159 (325)
T cd05604          85 FHLQ--RERSFPEPRARFYAAEIASALGYLHSI---NIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQSDTTTTFCGT  159 (325)
T ss_pred             HHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHeEECCCCCEEEeecCCcccCCCCCCCcccccCC
Confidence            9987  456789999999999999999999999   99999999999999999999999999986421   222344678


Q ss_pred             CCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHH
Q 044568          155 KGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLV  234 (257)
Q Consensus       155 ~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  234 (257)
                      ..|+|||.+.+..++.++|||||||++|||++|..||......   ......     ..       ............+.
T Consensus       160 ~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~---~~~~~~-----~~-------~~~~~~~~~~~~~~  224 (325)
T cd05604         160 PEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDVA---EMYDNI-----LH-------KPLVLRPGASLTAW  224 (325)
T ss_pred             hhhCCHHHHcCCCCCCcCccccccceehhhhcCCCCCCCCCHH---HHHHHH-----Hc-------CCccCCCCCCHHHH
Confidence            8999999999988999999999999999999999999754211   111100     00       00111223456788


Q ss_pred             HHHHHcccCCCCCCC-hH
Q 044568          235 KVGLWCVQDEPALRP-MK  251 (257)
Q Consensus       235 ~l~~~cl~~~p~~RP-~~  251 (257)
                      +++.+|++.+|.+|| ++
T Consensus       225 ~ll~~ll~~~p~~R~~~~  242 (325)
T cd05604         225 SILEELLEKDRQRRLGAK  242 (325)
T ss_pred             HHHHHHhccCHHhcCCCC
Confidence            999999999999999 75

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=100.00  E-value=1e-34  Score=245.51  Aligned_cols=228  Identities=19%  Similarity=0.223  Sum_probs=173.5

Q ss_pred             ccccceeeecccCC------CCCeeeccch----------hhhHHHHhHhhhccccccc-cCCceeeeceeeeecCceeE
Q 044568            4 TKLSNFYRSSFNAR------NSPWISRVSW----------TADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVSGK   66 (257)
Q Consensus         4 ~~~~~~y~~~~~~~------~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~~l   66 (257)
                      +.++.||++.....      ..+++|....          .+|++++.         ++ .|+|++++.+.+...+..++
T Consensus        23 g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~---------~l~~h~~i~~~~~~~~~~~~~~l   93 (293)
T cd05053          23 GAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMK---------MIGKHKNIINLLGVCTQEGPLYV   93 (293)
T ss_pred             cccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHH---------hhcCCCCeeeEEEEEcCCCCeEE
Confidence            46789999886543      3455664432          22333322         55 79999999999999999999


Q ss_pred             EEeecCCCCHHHHHhcc--------------CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCc
Q 044568           67 IERPVRNGSLTDIIFCS--------------AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT  132 (257)
Q Consensus        67 V~E~~~~gsL~~~l~~~--------------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~  132 (257)
                      +|||+++|+|.+++...              ....+++..+..++.|++.||.|||++   +++|+||+|.||++++++.
T Consensus        94 i~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivH~dlkp~Nil~~~~~~  170 (293)
T cd05053          94 VVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASK---KCIHRDLAARNVLVTEDHV  170 (293)
T ss_pred             EEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHC---CccccccceeeEEEcCCCe
Confidence            99999999999999631              345689999999999999999999999   9999999999999999999


Q ss_pred             eEEeeecccccCCCCc-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHH
Q 044568          133 AKILDFGLAKLPNEDF-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNW  206 (257)
Q Consensus       133 ~kl~dfg~~~~~~~~~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~  206 (257)
                      ++|+|||.++......     ....++..|+|||.+.+..++.++||||||+++||+++ |..||.......    ....
T Consensus       171 ~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~----~~~~  246 (293)
T cd05053         171 MKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEE----LFKL  246 (293)
T ss_pred             EEeCccccccccccccceeccCCCCCCccccCHHHhccCCcCcccceeehhhHHHHHhcCCCCCCCCCCHHH----HHHH
Confidence            9999999987543321     11223456999999988889999999999999999997 999986441111    0000


Q ss_pred             HHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          207 VYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                          ..     ... ....+......+.+++.+||+.+|++|| +.|+++.|
T Consensus       247 ----~~-----~~~-~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~eil~~l  288 (293)
T cd05053         247 ----LK-----EGY-RMEKPQNCTQELYHLMRDCWHEVPSQRPTFKQLVEDL  288 (293)
T ss_pred             ----HH-----cCC-cCCCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHHH
Confidence                00     000 0022334567789999999999999999 99998764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=100.00  E-value=1.8e-34  Score=240.43  Aligned_cols=230  Identities=17%  Similarity=0.209  Sum_probs=179.1

Q ss_pred             ccccceeeeccc-CCCCCeeeccc------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||++... ++..+++|...            +.+|++.+.         ++.|++++++.+.+...+..++||||
T Consensus        13 g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~---------~~~~~~i~~~~~~~~~~~~~~lv~e~   83 (267)
T cd08224          13 GQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLK---------QLDHPNVIKYLASFIENNELNIVLEL   83 (267)
T ss_pred             CCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHH---------hCCCCCeeeeeeeeecCCeEEEEEec
Confidence            567899999987 56666776442            223333333         88899999999999999999999999


Q ss_pred             cCCCCHHHHHhcc--CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC-
Q 044568           71 VRNGSLTDIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED-  147 (257)
Q Consensus        71 ~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~-  147 (257)
                      +++|+|.+++...  ....+++.++..++.|++.|+.|||+.   +++|+||+|+||+++.++.++++|||.+...... 
T Consensus        84 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~dl~p~nil~~~~~~~~l~d~~~~~~~~~~~  160 (267)
T cd08224          84 ADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSK---RIMHRDIKPANVFITATGVVKLGDLGLGRFFSSKT  160 (267)
T ss_pred             CCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhC---CEecCCcChhhEEECCCCcEEEeccceeeeccCCC
Confidence            9999999998642  345689999999999999999999999   9999999999999999999999999987643322 


Q ss_pred             --cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCC
Q 044568          148 --FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKV  225 (257)
Q Consensus       148 --~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (257)
                        .....++..|.|||.+.+..++.++|+||||+++|++++|+.||........     ....      ....... ...
T Consensus       161 ~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~-----~~~~------~~~~~~~-~~~  228 (267)
T cd08224         161 TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLY-----SLCK------KIEKCDY-PPL  228 (267)
T ss_pred             cccceecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCcccCCccHH-----HHHh------hhhcCCC-CCC
Confidence              1234567789999999888899999999999999999999999965421110     0000      0000000 112


Q ss_pred             CH-HHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          226 DK-KNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       226 ~~-~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      +. .....+.+++.+||+.+|.+|| +.+|+++|
T Consensus       229 ~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~il~~~  262 (267)
T cd08224         229 PADHYSEELRDLVSRCINPDPEKRPDISYVLQVA  262 (267)
T ss_pred             ChhhcCHHHHHHHHHHcCCCcccCCCHHHHHHHH
Confidence            22 4456789999999999999999 99998865

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=100.00  E-value=1e-34  Score=241.94  Aligned_cols=235  Identities=15%  Similarity=0.136  Sum_probs=178.0

Q ss_pred             ccccceeeecccCCCCCeeeccchh------hhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHH
Q 044568            4 TKLSNFYRSSFNARNSPWISRVSWT------ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLT   77 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~   77 (257)
                      +.++.||+++..+++..++|.....      ...+.-.+...-..+.++.|+|++++.+.+...+..++||||+++++|.
T Consensus        11 g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~   90 (265)
T cd06631          11 GAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISIFMEFVPGGSIS   90 (265)
T ss_pred             cCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEEEEecCCCCcHH
Confidence            5678999999878888888865421      0000001111111334888999999999999999999999999999999


Q ss_pred             HHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC---------Cc
Q 044568           78 DIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE---------DF  148 (257)
Q Consensus        78 ~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~---------~~  148 (257)
                      +++.  ....+++..+..++.|++.|+.|||+.   +++|+||+|+||+++.++.++|+|||.+.....         ..
T Consensus        91 ~~l~--~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~  165 (265)
T cd06631          91 SILN--RFGPLPEPVFCKYTKQILDGVAYLHNN---CVVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNML  165 (265)
T ss_pred             HHHH--hcCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCcCHHhEEECCCCeEEeccchhhHhhhhccccccccccc
Confidence            9997  345688999999999999999999999   999999999999999999999999998764311         11


Q ss_pred             ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHH
Q 044568          149 VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKK  228 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (257)
                      ....++..|+|||.+.+..++.++|+||||+++|++++|..||........   ....       .......  ...+..
T Consensus       166 ~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~---~~~~-------~~~~~~~--~~~~~~  233 (265)
T cd06631         166 KSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLASMDRLAA---MFYI-------GAHRGLM--PRLPDS  233 (265)
T ss_pred             cccCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHhCCCccccCChHHH---HHHh-------hhccCCC--CCCCCC
Confidence            233567789999999888889999999999999999999999974421110   0000       0000011  122334


Q ss_pred             HHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          229 NLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       229 ~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ....+.+++.+||+.+|.+|| +.|+++
T Consensus       234 ~~~~~~~~i~~~l~~~p~~Rp~~~~~l~  261 (265)
T cd06631         234 FSAAAIDFVTSCLTRDQHERPSALQLLR  261 (265)
T ss_pred             CCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence            567789999999999999999 999875

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=100.00  E-value=8.2e-35  Score=262.96  Aligned_cols=235  Identities=16%  Similarity=0.138  Sum_probs=174.8

Q ss_pred             ccccceeeeccc-CCCCCeeeccchh--hhHHHHhHhhhccccccccCCceeeeceeeeecC--------ceeEEEeecC
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSWT--ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTS--------VSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~--------~~~lV~E~~~   72 (257)
                      +.++.||+++.. ++..+++|.....  .+.+.......-..+..+.|+|++++...+...+        ..++||||++
T Consensus        43 G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~~~~~~i~lV~Ey~~  122 (496)
T PTZ00283         43 GATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNPENVLMIALVLDYAN  122 (496)
T ss_pred             CCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceecccccCcccceEEEEEEeCCC
Confidence            578899999854 5677788875421  1111111111111333778999998776654332        3679999999


Q ss_pred             CCCHHHHHhcc--CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---
Q 044568           73 NGSLTDIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---  147 (257)
Q Consensus        73 ~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---  147 (257)
                      +|+|.+++...  ....+++..+..++.|++.||.|||++   +++||||||+||+++.++.+||+|||+++.....   
T Consensus       123 ~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~---~IiHrDLKP~NILl~~~~~vkL~DFGls~~~~~~~~~  199 (496)
T PTZ00283        123 AGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSK---HMIHRDIKSANILLCSNGLVKLGDFGFSKMYAATVSD  199 (496)
T ss_pred             CCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEeCCCCEEEEecccCeeccccccc
Confidence            99999999642  345689999999999999999999999   9999999999999999999999999998754322   


Q ss_pred             --cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCC
Q 044568          148 --FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKV  225 (257)
Q Consensus       148 --~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (257)
                        .....||+.|+|||.+.+..++.++||||||+++|||++|+.||......       .....     ......  ...
T Consensus       200 ~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~~~~~~-------~~~~~-----~~~~~~--~~~  265 (496)
T PTZ00283        200 DVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGENME-------EVMHK-----TLAGRY--DPL  265 (496)
T ss_pred             cccccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHH-------HHHHH-----HhcCCC--CCC
Confidence              23456888999999999988999999999999999999999999754211       00000     000001  123


Q ss_pred             CHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          226 DKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       226 ~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +...++.+.+++.+||+.||.+|| +.++++
T Consensus       266 ~~~~~~~l~~li~~~L~~dP~~RPs~~ell~  296 (496)
T PTZ00283        266 PPSISPEMQEIVTALLSSDPKRRPSSSKLLN  296 (496)
T ss_pred             CCCCCHHHHHHHHHHcccChhhCcCHHHHHh
Confidence            344567899999999999999999 999875

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=100.00  E-value=1.3e-34  Score=252.63  Aligned_cols=187  Identities=14%  Similarity=0.117  Sum_probs=151.2

Q ss_pred             cccccceeeecccC-CCCCeeeccchhhh---HHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHH
Q 044568            3 CTKLSNFYRSSFNA-RNSPWISRVSWTAD---IEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTD   78 (257)
Q Consensus         3 ~~~~~~~y~~~~~~-~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~   78 (257)
                      .+.++.||+++... +..+++|...-...   -..-.+......+.++.|++++++.+.+......++||||+++|+|.+
T Consensus        11 ~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~E~~~gg~L~~   90 (363)
T cd05628          11 RGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLIMEFLPGGDMMT   90 (363)
T ss_pred             eCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEEcCCCCCcHHH
Confidence            35789999998654 55677776542111   000011111113347789999999999999999999999999999999


Q ss_pred             HHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC-----------
Q 044568           79 IIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED-----------  147 (257)
Q Consensus        79 ~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~-----------  147 (257)
                      ++.  ....+++.++..++.|++.||.|||++   +|+||||||+||+++.++.++|+|||++......           
T Consensus        91 ~l~--~~~~l~~~~~~~~~~qi~~aL~~lH~~---givHrDlKp~NILi~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~  165 (363)
T cd05628          91 LLM--KKDTLTEEETQFYIAETVLAIDSIHQL---GFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKKAHRTEFYRNLNH  165 (363)
T ss_pred             HHH--hcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEecCCCHHHeEECCCCCEEEeeccCcccccccccccccccccc
Confidence            997  456799999999999999999999999   9999999999999999999999999997643211           


Q ss_pred             ---------------------------cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcC
Q 044568          148 ---------------------------FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEID  194 (257)
Q Consensus       148 ---------------------------~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~  194 (257)
                                                 .....||+.|+|||++.+..++.++|+|||||++|||++|+.||...
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell~G~~Pf~~~  239 (363)
T cd05628         166 SLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSE  239 (363)
T ss_pred             cccccccccccccccccchhhhccccccccccCCccccCHHHHcCCCCCCchhhhhhHHHHHHHHhCCCCCCCC
Confidence                                       01236889999999999888999999999999999999999999755

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=100.00  E-value=1.7e-34  Score=239.51  Aligned_cols=228  Identities=19%  Similarity=0.191  Sum_probs=175.8

Q ss_pred             ccccceeeecccC-CC---CCeeeccch----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEe
Q 044568            4 TKLSNFYRSSFNA-RN---SPWISRVSW----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIER   69 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~---~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E   69 (257)
                      +.++.||++...+ +.   .+++|....          .+|++.         +.+++|+|++++.+.+.. ...++|||
T Consensus         6 g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~---------l~~l~h~~iv~~~~~~~~-~~~~~v~e   75 (257)
T cd05040           6 GSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAI---------MHSLDHENLIRLYGVVLT-HPLMMVTE   75 (257)
T ss_pred             cCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHH---------HhhcCCCCccceeEEEcC-CeEEEEEE
Confidence            5678999998765 22   246665442          233333         338899999999998888 88999999


Q ss_pred             ecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-
Q 044568           70 PVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-  148 (257)
Q Consensus        70 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-  148 (257)
                      |+++|+|.+++.+.....+++..+..++.|++.||.|||++   +++|+||+|+||+++.++.+||+|||++....... 
T Consensus        76 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~~  152 (257)
T cd05040          76 LAPLGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLESK---RFIHRDLAARNILLASDDKVKIGDFGLMRALPQNED  152 (257)
T ss_pred             ecCCCcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHhC---CccccccCcccEEEecCCEEEecccccccccccccc
Confidence            99999999999753325789999999999999999999999   99999999999999999999999999887543311 


Q ss_pred             -----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcC
Q 044568          149 -----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRG  222 (257)
Q Consensus       149 -----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (257)
                           ....++..|+|||.+....++.++|+||||+++|||++ |..||.......   ......          .....
T Consensus       153 ~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~---~~~~~~----------~~~~~  219 (257)
T cd05040         153 HYVMEEHLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGLSGSQ---ILKKID----------KEGER  219 (257)
T ss_pred             ceecccCCCCCceecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCCCCHHH---HHHHHH----------hcCCc
Confidence                 12345567999999988889999999999999999998 999996431111   111110          00011


Q ss_pred             CCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          223 TKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       223 ~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ...+...+..+.+++.+||+.+|++|| +.|+++.|
T Consensus       220 ~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l  255 (257)
T cd05040         220 LERPEACPQDIYNVMLQCWAHNPADRPTFAALREFL  255 (257)
T ss_pred             CCCCccCCHHHHHHHHHHCCCCcccCCCHHHHHHHh
Confidence            122334457899999999999999999 99998865

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.6e-34  Score=239.84  Aligned_cols=226  Identities=17%  Similarity=0.223  Sum_probs=171.9

Q ss_pred             cccccceeeecccCCC----CCeeeccch----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEE
Q 044568            3 CTKLSNFYRSSFNARN----SPWISRVSW----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIE   68 (257)
Q Consensus         3 ~~~~~~~y~~~~~~~~----~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~   68 (257)
                      .+.++.||+|....+.    ..++|...-          .+|++.+         ..+.|+|++++.+.+. .+..++||
T Consensus         5 ~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l---------~~l~h~~iv~~~~~~~-~~~~~~v~   74 (257)
T cd05060           5 HGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVM---------AQLDHPCIVRLIGVCK-GEPLMLVM   74 (257)
T ss_pred             ccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHH---------HhcCCCCeeeEEEEEc-CCceEEEE
Confidence            3578899999865554    455655432          2223333         3788999999998765 55689999


Q ss_pred             eecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc
Q 044568           69 RPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF  148 (257)
Q Consensus        69 E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~  148 (257)
                      ||+++|+|.+++..  ...+++..+..++.|++.|+.|||++   +++|+||+|+||+++.++.++|+|||.+.......
T Consensus        75 e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lh~~---~i~H~di~p~nili~~~~~~kl~df~~~~~~~~~~  149 (257)
T cd05060          75 ELAPLGPLLKYLKK--RREIPVSDLKELAHQVAMGMAYLESK---HFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGS  149 (257)
T ss_pred             EeCCCCcHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHHhhc---CeeccCcccceEEEcCCCcEEeccccccceeecCC
Confidence            99999999999974  34789999999999999999999999   99999999999999999999999999887442222


Q ss_pred             c------cccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc
Q 044568          149 V------IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR  221 (257)
Q Consensus       149 ~------~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (257)
                      .      ...++..|+|||.+.+..++.++|+||||+++||+++ |..||......    ........    .      .
T Consensus       150 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~~~----~~~~~~~~----~------~  215 (257)
T cd05060         150 DYYRATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKGA----EVIAMLES----G------E  215 (257)
T ss_pred             cccccccCccccccccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccCCHH----HHHHHHHc----C------C
Confidence            1      1112346999999988889999999999999999998 99999644211    11111100    0      0


Q ss_pred             CCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          222 GTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       222 ~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ....+...+..+.+++.+||+.+|++|| +.++++.|
T Consensus       216 ~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~~l~~~l  252 (257)
T cd05060         216 RLPRPEECPQEIYSIMLSCWKYRPEDRPTFSELESTF  252 (257)
T ss_pred             cCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHH
Confidence            1123334557889999999999999999 99998864

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=100.00  E-value=8.7e-35  Score=246.78  Aligned_cols=234  Identities=16%  Similarity=0.106  Sum_probs=174.7

Q ss_pred             ccccceeeecc-cCCCCCeeeccchhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHHHhc
Q 044568            4 TKLSNFYRSSF-NARNSPWISRVSWTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFC   82 (257)
Q Consensus         4 ~~~~~~y~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~   82 (257)
                      +.++.||++.. .++..+++|.......-+.......-..+..+.|+|++++.+.+...+..++||||+++++|.+++..
T Consensus        31 g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~  110 (296)
T cd06654          31 GASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTE  110 (296)
T ss_pred             CCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEeecccCCCCHHHHHHh
Confidence            45788999985 44556667655431111100000000123377899999999999999999999999999999999953


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---cccccCCCCccC
Q 044568           83 SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---FVIDKRDKGYMA  159 (257)
Q Consensus        83 ~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~~~~~~~~~~~a  159 (257)
                         ..+++.+...++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||.+......   .....+++.|+|
T Consensus       111 ---~~~~~~~~~~i~~ql~~aL~~LH~~---gi~H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~a  184 (296)
T cd06654         111 ---TCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMA  184 (296)
T ss_pred             ---cCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCEEECccccchhccccccccCcccCCccccC
Confidence               4588999999999999999999999   9999999999999999999999999987643221   123467778999


Q ss_pred             cccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHH
Q 044568          160 PECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLW  239 (257)
Q Consensus       160 PE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  239 (257)
                      ||.+.+..++.++|+||||+++|++++|+.||........      +. ...     .........+......+.+++.+
T Consensus       185 PE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~~~~------~~-~~~-----~~~~~~~~~~~~~~~~l~~li~~  252 (296)
T cd06654         185 PEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRA------LY-LIA-----TNGTPELQNPEKLSAIFRDFLNR  252 (296)
T ss_pred             HHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCCCHHHh------HH-HHh-----cCCCCCCCCccccCHHHHHHHHH
Confidence            9999888889999999999999999999999975422110      00 000     00001112233455678999999


Q ss_pred             cccCCCCCCC-hHHHHH
Q 044568          240 CVQDEPALRP-MKCAVM  255 (257)
Q Consensus       240 cl~~~p~~RP-~~ei~~  255 (257)
                      ||+.+|++|| +.|+++
T Consensus       253 ~l~~~p~~Rpt~~eil~  269 (296)
T cd06654         253 CLDMDVEKRGSAKELLQ  269 (296)
T ss_pred             HCcCCcccCcCHHHHhh
Confidence            9999999999 999976

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.3e-34  Score=242.71  Aligned_cols=228  Identities=20%  Similarity=0.258  Sum_probs=174.8

Q ss_pred             ccccceeeecccCC------CCCeeeccch----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEE
Q 044568            4 TKLSNFYRSSFNAR------NSPWISRVSW----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~~~~------~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV   67 (257)
                      +.++.||++.....      ..+++|....          .++++.         +..+.|+|++++.+.+...+..++|
T Consensus        17 g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~---------l~~~~~~~i~~~~~~~~~~~~~~~v   87 (277)
T cd05032          17 GSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASV---------MKEFNCHHVVRLLGVVSTGQPTLVV   87 (277)
T ss_pred             CCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHH---------HHhCCCCceeEEEEEEcCCCCcEEE
Confidence            56788999886543      3556665431          222222         3378899999999999999999999


Q ss_pred             EeecCCCCHHHHHhccC--------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeec
Q 044568           68 ERPVRNGSLTDIIFCSA--------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFG  139 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg  139 (257)
                      |||+++|+|.+++....        ...+++..+..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||
T Consensus        88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~di~p~nill~~~~~~kl~dfg  164 (277)
T cd05032          88 MELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAK---KFVHRDLAARNCMVAEDLTVKIGDFG  164 (277)
T ss_pred             EecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhC---CccccccChheEEEcCCCCEEECCcc
Confidence            99999999999996421        23478889999999999999999999   99999999999999999999999999


Q ss_pred             ccccCCCCc-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhh
Q 044568          140 LAKLPNEDF-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFIN  213 (257)
Q Consensus       140 ~~~~~~~~~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~  213 (257)
                      +++......     ....++..|+|||.+.+..++.++|+||||+++||+++ |..||.......    .....    ..
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~----~~~~~----~~  236 (277)
T cd05032         165 MTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGLSNEE----VLKFV----ID  236 (277)
T ss_pred             cchhhccCcccccCCCCCccccccCHHHHhcCCCCcccchHHHHHHHHHhhccCCCCCccCCHHH----HHHHH----hc
Confidence            886433221     22334567999999988889999999999999999998 899986432111    11100    00


Q ss_pred             hhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          214 RELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ..      ....+...+..+.+++.+||+.+|++|| +.|+++.|
T Consensus       237 ~~------~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l  275 (277)
T cd05032         237 GG------HLDLPENCPDKLLELMRMCWQYNPKMRPTFLEIVSSL  275 (277)
T ss_pred             CC------CCCCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHHHh
Confidence            00      0122334467899999999999999999 99999875

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=8.6e-35  Score=251.80  Aligned_cols=224  Identities=17%  Similarity=0.189  Sum_probs=177.9

Q ss_pred             cccccceeeecccCCCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            3 CTKLSNFYRSSFNARNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         3 ~~~~~~~y~~~~~~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      |+++|.||+....+...++++++.           |.+|++.+. .+.       .|.+|++++++-..++..||||||-
T Consensus       371 ~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~-KLk-------g~~~IIqL~DYEv~d~~lYmvmE~G  442 (677)
T KOG0596|consen  371 SGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLN-KLK-------GHDKIIQLYDYEVTDGYLYMVMECG  442 (677)
T ss_pred             CCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHH-Hhc-------CCceEEEEeeeeccCceEEEEeecc
Confidence            789999999999999999888765           456666665 223       3789999999999999999999977


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc---
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF---  148 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~---  148 (257)
                      + -+|.++|.. ....++.-..+.+..|++.|+.++|.+   ||||.||||.|+|+-. |.+||+|||.+..+..+.   
T Consensus       443 d-~DL~kiL~k-~~~~~~~~~lk~ywkqML~aV~~IH~~---gIVHSDLKPANFLlVk-G~LKLIDFGIA~aI~~DTTsI  516 (677)
T KOG0596|consen  443 D-IDLNKILKK-KKSIDPDWFLKFYWKQMLLAVKTIHQH---GIVHSDLKPANFLLVK-GRLKLIDFGIANAIQPDTTSI  516 (677)
T ss_pred             c-ccHHHHHHh-ccCCCchHHHHHHHHHHHHHHHHHHHh---ceeecCCCcccEEEEe-eeEEeeeechhcccCccccce
Confidence            5 599999986 334444337889999999999999999   9999999999999875 499999999998655443   


Q ss_pred             --ccccCCCCccCcccccCC-----------CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhh
Q 044568          149 --VIDKRDKGYMAPECYKRT-----------PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRE  215 (257)
Q Consensus       149 --~~~~~~~~~~aPE~~~~~-----------~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~  215 (257)
                        ..+.||+.|++||++...           ..+.++||||+||+||+|+.|++||...         .+      ....
T Consensus       517 ~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~---------~n------~~aK  581 (677)
T KOG0596|consen  517 VKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQI---------IN------QIAK  581 (677)
T ss_pred             eeccccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchHHH---------HH------HHHH
Confidence              677999999999998532           2568899999999999999999999622         11      1233


Q ss_pred             hhhhhcCC---CCCHHHH-HHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          216 LNKLVRGT---KVDKKNL-ENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       216 ~~~~~~~~---~~~~~~~-~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +..+.++.   +++.--. .++++++..||+.||.+|| +.|+++
T Consensus       582 l~aI~~P~~~Iefp~~~~~~~li~~mK~CL~rdPkkR~si~eLLq  626 (677)
T KOG0596|consen  582 LHAITDPNHEIEFPDIPENDELIDVMKCCLARDPKKRWSIPELLQ  626 (677)
T ss_pred             HHhhcCCCccccccCCCCchHHHHHHHHHHhcCcccCCCcHHHhc
Confidence            44555542   2222222 2399999999999999999 999986

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=100.00  E-value=1.8e-34  Score=239.19  Aligned_cols=227  Identities=17%  Similarity=0.272  Sum_probs=176.9

Q ss_pred             ccccceeeecccCCCCCeeeccc--------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS--------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGS   75 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gs   75 (257)
                      +.++.||++....+...++|...        +.+|++.+.         ++.|++++++.+.+......++||||+++++
T Consensus        15 g~~g~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~~~l~---------~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~   85 (256)
T cd05112          15 GQFGLVWLGYWLEKRKVAIKTIREGAMSEEDFIEEAQVMM---------KLSHPKLVQLYGVCTERSPICLVFEFMEHGC   85 (256)
T ss_pred             cccceEEEEEEeCCCeEEEEECCCCCCCHHHHHHHHHHHH---------hCCCCCeeeEEEEEccCCceEEEEEcCCCCc
Confidence            45788999988777777776543        334444444         7889999999999999999999999999999


Q ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc----ccc
Q 044568           76 LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF----VID  151 (257)
Q Consensus        76 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~----~~~  151 (257)
                      |.+++.. ....+++..+..++.|++.|+.|||++   +++|+|++|+||+++.++.++|+|||.+.......    ...
T Consensus        86 L~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~  161 (256)
T cd05112          86 LSDYLRA-QRGKFSQETLLGMCLDVCEGMAYLESS---NVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYTSSTGT  161 (256)
T ss_pred             HHHHHHh-CccCCCHHHHHHHHHHHHHHHHHHHHC---CccccccccceEEEcCCCeEEECCCcceeecccCcccccCCC
Confidence            9999975 445689999999999999999999999   99999999999999999999999999876432221    112


Q ss_pred             cCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHH
Q 044568          152 KRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNL  230 (257)
Q Consensus       152 ~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (257)
                      ..+..|+|||.+.+..++.++|+||||+++||+++ |..||......   ....    ...   .....    ..+...+
T Consensus       162 ~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~---~~~~----~~~---~~~~~----~~~~~~~  227 (256)
T cd05112         162 KFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRSNS---EVVE----TIN---AGFRL----YKPRLAS  227 (256)
T ss_pred             ccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCcCCHH---HHHH----HHh---CCCCC----CCCCCCC
Confidence            23457999999988889999999999999999998 99999643111   0010    000   00001    1122235


Q ss_pred             HHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          231 ENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       231 ~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ..+.+++.+||+.+|++|| +.|+++.|
T Consensus       228 ~~~~~l~~~~l~~~p~~Rp~~~~~l~~l  255 (256)
T cd05112         228 QSVYELMQHCWKERPEDRPSFSLLLHQL  255 (256)
T ss_pred             HHHHHHHHHHcccChhhCCCHHHHHHhh
Confidence            6799999999999999999 99999875

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=9e-35  Score=244.81  Aligned_cols=240  Identities=18%  Similarity=0.244  Sum_probs=172.7

Q ss_pred             ccccceeeeccc-----CCCCCeeeccc---------hhhhHHHHhHhhhccccccccCCceeeeceeeee--cCceeEE
Q 044568            4 TKLSNFYRSSFN-----ARNSPWISRVS---------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL--TSVSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~~-----~~~~~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~--~~~~~lV   67 (257)
                      +.++.||+++..     ++..+++|...         +.+|++.+.         ++.|+|++++.+.+..  ....++|
T Consensus        15 g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~---------~l~h~~iv~~~~~~~~~~~~~~~lv   85 (284)
T cd05081          15 GNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILK---------SLQHDNIVKYKGVCYSAGRRNLRLV   85 (284)
T ss_pred             CCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHH---------hCCCCCeeEEEEEEccCCCCceEEE
Confidence            568899998753     45566777653         234444444         8899999999887654  3467899


Q ss_pred             EeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC
Q 044568           68 ERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED  147 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~  147 (257)
                      |||+++|+|.+++.. ....+++..+..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||++......
T Consensus        86 ~e~~~~~~L~~~l~~-~~~~l~~~~~~~~~~~l~~aL~~LH~~---~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~  161 (284)
T cd05081          86 MEYLPYGSLRDYLQK-HRERLDHRKLLLYASQICKGMEYLGSK---RYVHRDLATRNILVESENRVKIGDFGLTKVLPQD  161 (284)
T ss_pred             EEecCCCCHHHHHHh-cCcCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCCHhhEEECCCCeEEECCCcccccccCC
Confidence            999999999999974 345689999999999999999999999   9999999999999999999999999998754322


Q ss_pred             cc------cccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc
Q 044568          148 FV------IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR  221 (257)
Q Consensus       148 ~~------~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (257)
                      ..      ...++..|+|||.+.+..++.++|+||||+++||+++|..|+.......... .............+.+.+.
T Consensus       162 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  240 (284)
T cd05081         162 KEYYKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSCSPPAEFMRM-MGNDKQGQMIVYHLIELLK  240 (284)
T ss_pred             CcceeecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhcCCcCCCcchhhhhh-cccccccccchHHHHHHHh
Confidence            11      1112234899999988889999999999999999999887765331110000 0000000000000111111


Q ss_pred             CC---CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          222 GT---KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       222 ~~---~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ..   ..+...+..+.+++.+||+.+|++|| +.|+++.|
T Consensus       241 ~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l  280 (284)
T cd05081         241 NNGRLPAPPGCPAEIYAIMKECWNNDPSQRPSFSELALQV  280 (284)
T ss_pred             cCCcCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHH
Confidence            11   22334557899999999999999999 99998864

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.1e-34  Score=239.57  Aligned_cols=233  Identities=15%  Similarity=0.122  Sum_probs=175.7

Q ss_pred             ccccceeeeccc-CCCCCeeeccchh-------hhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCC
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSWT-------ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGS   75 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~~-------~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gs   75 (257)
                      +.++.||++... ++..+++|.....       .+++.+.  ..-..+.++.|+|++++.+.+...+..++|+||+++++
T Consensus        13 g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~--~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~   90 (263)
T cd06625          13 GAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALE--CEIQLLKNLQHERIVQYYGCLRDDETLSIFMEYMPGGS   90 (263)
T ss_pred             CCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHH--HHHHHHHhCCCCCeeeeEEEEccCCeEEEEEEECCCCc
Confidence            457889999854 4556666653311       1111111  00013348899999999999999999999999999999


Q ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc------c
Q 044568           76 LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF------V  149 (257)
Q Consensus        76 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~------~  149 (257)
                      |.+.+.  ....+++..+..++.|++.|+.|||+.   +++|+||+|+||+++.++.++|+|||.+.......      .
T Consensus        91 l~~~~~--~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dl~p~nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~~  165 (263)
T cd06625          91 VKDQLK--AYGALTETVTRKYTRQILEGVEYLHSN---MIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICSSGTGMK  165 (263)
T ss_pred             HHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeecccceecccccccccccc
Confidence            999997  445688999999999999999999999   99999999999999999999999999986433211      2


Q ss_pred             cccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHH
Q 044568          150 IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKN  229 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (257)
                      ...++..|+|||.+.+..++.++|+||+|+++||+++|+.||........   ....          .........+...
T Consensus       166 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~---~~~~----------~~~~~~~~~~~~~  232 (263)
T cd06625         166 SVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEFEAMAA---IFKI----------ATQPTNPQLPSHV  232 (263)
T ss_pred             CCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHhCCCCccccchHHH---HHHH----------hccCCCCCCCccC
Confidence            23456789999999988899999999999999999999999964411110   0000          0000111233445


Q ss_pred             HHHHHHHHHHcccCCCCCCC-hHHHHHh
Q 044568          230 LENLVKVGLWCVQDEPALRP-MKCAVMM  256 (257)
Q Consensus       230 ~~~l~~l~~~cl~~~p~~RP-~~ei~~~  256 (257)
                      ...+.+++.+||+.+|.+|| +.|+++.
T Consensus       233 ~~~~~~li~~~l~~~p~~Rpt~~~ll~~  260 (263)
T cd06625         233 SPDARNFLRRTFVENAKKRPSAEELLRH  260 (263)
T ss_pred             CHHHHHHHHHHhhcCcccCCCHHHHhhC
Confidence            66789999999999999999 9999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=100.00  E-value=2.4e-34  Score=238.35  Aligned_cols=237  Identities=21%  Similarity=0.230  Sum_probs=180.0

Q ss_pred             ccccceeeecccC----CCCCeeeccchhhhHH-HHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHH
Q 044568            4 TKLSNFYRSSFNA----RNSPWISRVSWTADIE-VLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTD   78 (257)
Q Consensus         4 ~~~~~~y~~~~~~----~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~   78 (257)
                      +.++.||++....    ...+++|.......-. .-.+...-..+.++.|+|++++.+.+......++||||+++++|.+
T Consensus         6 g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~   85 (262)
T cd00192           6 GAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYMEGGDLLD   85 (262)
T ss_pred             CCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEeccCCcHHH
Confidence            5678999999876    5556666554321100 0010011113337789999999999999999999999999999999


Q ss_pred             HHhccC-------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC----
Q 044568           79 IIFCSA-------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED----  147 (257)
Q Consensus        79 ~l~~~~-------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~----  147 (257)
                      ++....       ...+++.++..++.|++.|+.|||++   +++|+||+|+||+++.++.++|+|||.+......    
T Consensus        86 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~~  162 (262)
T cd00192          86 YLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASK---KFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYR  162 (262)
T ss_pred             HHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcC---CcccCccCcceEEECCCCcEEEcccccccccccccccc
Confidence            998521       47799999999999999999999999   9999999999999999999999999998765432    


Q ss_pred             -cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCC
Q 044568          148 -FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKV  225 (257)
Q Consensus       148 -~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (257)
                       .....++..|+|||.+....++.++|+||+|+++||+++ |..||......   .....          ... ......
T Consensus       163 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~---~~~~~----------~~~-~~~~~~  228 (262)
T cd00192         163 KKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLSNE---EVLEY----------LRK-GYRLPK  228 (262)
T ss_pred             cccCCCcCccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCCCCHH---HHHHH----------HHc-CCCCCC
Confidence             233445677999999988888999999999999999999 69999755111   00000          000 001123


Q ss_pred             CHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          226 DKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       226 ~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      +...+..+.+++.+||+.+|.+|| +.|+++.|
T Consensus       229 ~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l  261 (262)
T cd00192         229 PEYCPDELYELMLSCWQLDPEDRPTFSELVERL  261 (262)
T ss_pred             CccCChHHHHHHHHHccCCcccCcCHHHHHHhh
Confidence            344467899999999999999999 99999865

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=100.00  E-value=2.5e-34  Score=241.98  Aligned_cols=234  Identities=16%  Similarity=0.109  Sum_probs=173.3

Q ss_pred             ccccceeeecccCCCCC-eeeccch--hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHHH
Q 044568            4 TKLSNFYRSSFNARNSP-WISRVSW--TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDII   80 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~-~i~~~~~--~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l   80 (257)
                      +.++.||++........ +++....  ....+.... .. ..+..+.|+|++++.+.+...+..++||||+++++|..++
T Consensus        16 g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~-e~-~~l~~l~h~~ii~~~~~~~~~~~~~~v~e~~~~~~l~~~~   93 (282)
T cd06643          16 GAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMV-EI-DILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVM   93 (282)
T ss_pred             CCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHH-HH-HHHHHCCCCCeeeEEEEEeeCCEEEEEEEecCCCcHHHHH
Confidence            45789999997765443 4544332  111111110 00 0233788999999999999999999999999999999988


Q ss_pred             hccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---cccccCCCCc
Q 044568           81 FCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---FVIDKRDKGY  157 (257)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~~~~~~~~~~  157 (257)
                      .. ....+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++++|||++......   .....++..|
T Consensus        94 ~~-~~~~l~~~~~~~~~~qi~~~L~~LH~~---~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y  169 (282)
T cd06643          94 LE-LERPLTEPQIRVVCKQTLEALNYLHEN---KIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYW  169 (282)
T ss_pred             Hh-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCcccEEEccCCCEEEccccccccccccccccccccccccc
Confidence            64 456799999999999999999999999   9999999999999999999999999988643221   2334577889


Q ss_pred             cCccccc-----CCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHH
Q 044568          158 MAPECYK-----RTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLEN  232 (257)
Q Consensus       158 ~aPE~~~-----~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (257)
                      +|||.+.     ...++.++|+||||+++|||++|+.||.......   ......    .     ........+...+..
T Consensus       170 ~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~---~~~~~~----~-----~~~~~~~~~~~~~~~  237 (282)
T cd06643         170 MAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHELNPMR---VLLKIA----K-----SEPPTLAQPSRWSSE  237 (282)
T ss_pred             cCHhhccccCCCCCCCCccchhhhHHHHHHHHccCCCCccccCHHH---HHHHHh----h-----cCCCCCCCccccCHH
Confidence            9999984     3456789999999999999999999997542111   111100    0     000011123334567


Q ss_pred             HHHHHHHcccCCCCCCC-hHHHHH
Q 044568          233 LVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       233 l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +.+++.+||+.||.+|| +.++++
T Consensus       238 ~~~li~~~l~~~p~~Rp~~~~il~  261 (282)
T cd06643         238 FKDFLKKCLEKNVDARWTTTQLLQ  261 (282)
T ss_pred             HHHHHHHHccCChhhCcCHHHHhc
Confidence            89999999999999999 999875

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=100.00  E-value=3.5e-34  Score=236.84  Aligned_cols=227  Identities=18%  Similarity=0.225  Sum_probs=178.5

Q ss_pred             ccccceeeecccCCCCCeeeccch----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVSW----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRN   73 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~   73 (257)
                      ++++.||++....+..+++|....          .+|++         ...++.|+|++++.+.+...+..++||||+++
T Consensus         6 g~~g~v~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~e~~---------~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~   76 (251)
T cd05041           6 GNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAE---------ILKQYDHPNIVKLIGVCVQKQPIYIVMELVPG   76 (251)
T ss_pred             CCCceEEEEEEeCCCcEEEEeccccCCHHHHHHHHHHHH---------HHHhCCCCCeEEEEEEEecCCCeEEEEEcCCC
Confidence            468899999988788888886442          22333         33378899999999999999999999999999


Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcc----
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFV----  149 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~----  149 (257)
                      ++|.+++.. ....+++..+..++.+++.|+.|||++   +++|+|++|+||+++.++.++|+|||.+........    
T Consensus        77 ~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~l~~lH~~---~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~  152 (251)
T cd05041          77 GSLLTFLRK-KKNRLTVKKLLQMSLDAAAGMEYLESK---NCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSD  152 (251)
T ss_pred             CcHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHhC---CEehhhcCcceEEEcCCCcEEEeeccccccccCCcceecc
Confidence            999999975 345688999999999999999999999   999999999999999999999999999875432111    


Q ss_pred             -cccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCH
Q 044568          150 -IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDK  227 (257)
Q Consensus       150 -~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (257)
                       ....+..|+|||.+.+..++.++|+||||+++||+++ |..||.......    ....         .... .....+.
T Consensus       153 ~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~~~~----~~~~---------~~~~-~~~~~~~  218 (251)
T cd05041         153 GLKQIPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMSNQQ----TRER---------IESG-YRMPAPQ  218 (251)
T ss_pred             ccCcceeccCChHhhccCCCCcchhHHHHHHHHHHHHhccCCCCccCCHHH----HHHH---------HhcC-CCCCCCc
Confidence             1122446999999988889999999999999999999 888886542111    0000         0000 0112234


Q ss_pred             HHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          228 KNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       228 ~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ..+..+.+++.+||+.+|.+|| +.|+++.|
T Consensus       219 ~~~~~~~~li~~~l~~~p~~Rp~~~ell~~l  249 (251)
T cd05041         219 LCPEEIYRLMLQCWAYDPENRPSFSEIYNEL  249 (251)
T ss_pred             cCCHHHHHHHHHHhccChhhCcCHHHHHHHh
Confidence            4567899999999999999999 99999875

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=100.00  E-value=1.9e-34  Score=241.01  Aligned_cols=234  Identities=18%  Similarity=0.199  Sum_probs=174.8

Q ss_pred             ccccceeeecccCCCC----Ceeeccch---hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCH
Q 044568            4 TKLSNFYRSSFNARNS----PWISRVSW---TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSL   76 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~----~~i~~~~~---~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL   76 (257)
                      +.++.||+|.......    +++|....   ....+.+.  ..-..+..+.|+|++++.+.+...+..++||||+++|+|
T Consensus        15 g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~--~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~e~~~~~~L   92 (269)
T cd05065          15 GEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFL--SEASIMGQFDHPNIIHLEGVVTKSRPVMIITEFMENGAL   92 (269)
T ss_pred             CCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHH--HHHHHHHhCCCcCcceEEEEECCCCceEEEEecCCCCcH
Confidence            5688999999765543    66766432   11111111  111123378899999999999999999999999999999


Q ss_pred             HHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-----ccc
Q 044568           77 TDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-----VID  151 (257)
Q Consensus        77 ~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-----~~~  151 (257)
                      .+++.. ....+++.++..++.|++.|+.|||++   +++|+|++|+||+++.++.++++|||++.......     ...
T Consensus        93 ~~~l~~-~~~~~~~~~~~~i~~~l~~al~~lH~~---g~~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~  168 (269)
T cd05065          93 DSFLRQ-NDGQFTVIQLVGMLRGIAAGMKYLSEM---NYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSS  168 (269)
T ss_pred             HHHHhh-CCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccChheEEEcCCCcEEECCCccccccccCccccccccc
Confidence            999975 456789999999999999999999999   99999999999999999999999999876433211     111


Q ss_pred             c---CCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCH
Q 044568          152 K---RDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDK  227 (257)
Q Consensus       152 ~---~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (257)
                      .   .+..|++||.+.+..++.++|+||||+++||+++ |..||......    ....+..         ... ....+.
T Consensus       169 ~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~~~----~~~~~i~---------~~~-~~~~~~  234 (269)
T cd05065         169 LGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQ----DVINAIE---------QDY-RLPPPM  234 (269)
T ss_pred             cCCCcceeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCCCCHH----HHHHHHH---------cCC-cCCCcc
Confidence            1   1236999999998889999999999999999886 99999644211    1111110         000 112233


Q ss_pred             HHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          228 KNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       228 ~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      +.+..+.+++.+||+.+|.+|| +.++++.|
T Consensus       235 ~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l  265 (269)
T cd05065         235 DCPTALHQLMLDCWQKDRNARPKFGQIVSTL  265 (269)
T ss_pred             cCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            4567789999999999999999 99998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=100.00  E-value=2e-34  Score=239.75  Aligned_cols=234  Identities=21%  Similarity=0.274  Sum_probs=169.0

Q ss_pred             ccccceeeecccCCC----CCeeeccch---hhhHHHHhHhhhccccccccCCceeeeceeee-ecCceeEEEeecCCCC
Q 044568            4 TKLSNFYRSSFNARN----SPWISRVSW---TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAK-LTSVSGKIERPVRNGS   75 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~----~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~-~~~~~~lV~E~~~~gs   75 (257)
                      +.++.||+|+..+..    .+++|....   ..+.+.+.  ........+.|+|++++.+.+. .++..++||||+.+|+
T Consensus         6 g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~--~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~~~~   83 (262)
T cd05058           6 GHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFL--KEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYMKHGD   83 (262)
T ss_pred             cCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHH--HHHHHHccCCCCCcceEEEEeecCCCCcEEEEecCCCCC
Confidence            467899999875433    356666532   11111111  1111234788999999999765 4556889999999999


Q ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-------
Q 044568           76 LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-------  148 (257)
Q Consensus        76 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-------  148 (257)
                      |.+++.. ....+++.....++.|+++||.|||+.   +++|+||+|+||+++.++.++|+|||++.......       
T Consensus        84 L~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~  159 (262)
T cd05058          84 LRNFIRS-ETHNPTVKDLIGFGLQVAKGMEYLASK---KFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNH  159 (262)
T ss_pred             HHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHhC---CccccccCcceEEEcCCCcEEECCccccccccCCcceeeccc
Confidence            9999975 345567888889999999999999999   99999999999999999999999999886432211       


Q ss_pred             ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhc-CCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCH
Q 044568          149 VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICC-RKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDK  227 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g-~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (257)
                      ....++..|+|||.+.+..++.++||||||+++|||++| ..||....    ........         ... .....+.
T Consensus       160 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~----~~~~~~~~---------~~~-~~~~~~~  225 (262)
T cd05058         160 TGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVD----SFDITVYL---------LQG-RRLLQPE  225 (262)
T ss_pred             ccCcCCccccChhHhccCccchHHHHHHHHHHHHHHHcCCCCCCCCCC----HHHHHHHH---------hcC-CCCCCCC
Confidence            122345579999999888899999999999999999995 45554321    11111100         000 0111223


Q ss_pred             HHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          228 KNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       228 ~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ..+..+.+++..||+.+|++|| +.|+++.|
T Consensus       226 ~~~~~~~~li~~cl~~~p~~Rp~~~~il~~l  256 (262)
T cd05058         226 YCPDPLYEVMLSCWHPKPEMRPTFSELVSRI  256 (262)
T ss_pred             cCCHHHHHHHHHHcCCChhhCCCHHHHHHHH
Confidence            3456799999999999999999 99998764

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=100.00  E-value=1.7e-34  Score=249.45  Aligned_cols=236  Identities=18%  Similarity=0.206  Sum_probs=172.0

Q ss_pred             ccccceeeecccC------CCCCeeeccch---hhhHHHHhHhhhccccccc-cCCceeeeceeeee-cCceeEEEeecC
Q 044568            4 TKLSNFYRSSFNA------RNSPWISRVSW---TADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKL-TSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~~------~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~-~~~~~lV~E~~~   72 (257)
                      +.|+.||++....      ++.+++|...-   ..+.+.+. .... .+.++ .|+|++++.+.+.. +...+++|||++
T Consensus        18 G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~-~E~~-~~~~l~~h~niv~~~~~~~~~~~~~~~v~ey~~   95 (337)
T cd05054          18 GAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALM-TELK-ILIHIGHHLNVVNLLGACTKPGGPLMVIVEYCK   95 (337)
T ss_pred             CcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHH-HHHH-HHHhhccCcchhheeeeEecCCCCEEEEEecCC
Confidence            5789999996433      34677776431   11111111 0000 22255 69999999998765 456789999999


Q ss_pred             CCCHHHHHhccC-----------------------------------------------------------CCCCCHHHH
Q 044568           73 NGSLTDIIFCSA-----------------------------------------------------------ERNPYWNQR   93 (257)
Q Consensus        73 ~gsL~~~l~~~~-----------------------------------------------------------~~~l~~~~~   93 (257)
                      +|+|.+++....                                                           ...+++..+
T Consensus        96 ~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  175 (337)
T cd05054          96 FGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGDELYKEPLTLEDL  175 (337)
T ss_pred             CCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchhhhHHhhcCCCHHHH
Confidence            999999986321                                                           136889999


Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-----ccccCCCCccCcccccCCCC
Q 044568           94 VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-----VIDKRDKGYMAPECYKRTPI  168 (257)
Q Consensus        94 ~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-----~~~~~~~~~~aPE~~~~~~~  168 (257)
                      ..++.|++.||.|||++   +|+||||||.||+++.++.++|+|||++.......     ....++..|+|||.+.+..+
T Consensus       176 ~~~~~qi~~aL~~lH~~---~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  252 (337)
T cd05054         176 ISYSFQVARGMEFLASR---KCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPESIFDKVY  252 (337)
T ss_pred             HHHHHHHHHHHHHHHhC---CeecCCCCcceEEEeCCCcEEEeccccchhcccCcchhhccCCCCCccccCcHHhcCCCC
Confidence            99999999999999999   99999999999999999999999999987542211     12234567999999999999


Q ss_pred             CccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCC
Q 044568          169 SVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPAL  247 (257)
Q Consensus       169 ~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~  247 (257)
                      +.++|||||||++||+++ |..||......+.   ...         ...... ....+......+.+++.+||+.+|++
T Consensus       253 ~~~~Di~SlGv~l~el~t~g~~p~~~~~~~~~---~~~---------~~~~~~-~~~~~~~~~~~~~~l~~~cl~~~p~~  319 (337)
T cd05054         253 TTQSDVWSFGVLLWEIFSLGASPYPGVQIDEE---FCR---------RLKEGT-RMRAPEYATPEIYSIMLDCWHNNPED  319 (337)
T ss_pred             CccccHHHHHHHHHHHHHcCCCCCCCCCccHH---HHH---------HHhccC-CCCCCccCCHHHHHHHHHHccCChhh
Confidence            999999999999999998 9999975422111   000         000000 01122334567899999999999999


Q ss_pred             CC-hHHHHHhC
Q 044568          248 RP-MKCAVMML  257 (257)
Q Consensus       248 RP-~~ei~~~L  257 (257)
                      || +.|+++.|
T Consensus       320 RPs~~ell~~l  330 (337)
T cd05054         320 RPTFSELVEIL  330 (337)
T ss_pred             CcCHHHHHHHH
Confidence            99 99999865

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=100.00  E-value=1.6e-34  Score=243.66  Aligned_cols=241  Identities=15%  Similarity=0.105  Sum_probs=174.1

Q ss_pred             ccccceeeecccC-CCCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeee-----cCceeE
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL-----TSVSGK   66 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~-----~~~~~l   66 (257)
                      +.++.||++...+ +..+++|....           .+|++.+.      .+..+.|+|++++.+.+..     ....++
T Consensus        11 g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~------~l~~~~h~ni~~~~~~~~~~~~~~~~~~~l   84 (288)
T cd07863          11 GAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLK------RLEAFDHPNIVRLMDVCATSRTDRETKVTL   84 (288)
T ss_pred             cCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHH------HhhhcCCCCeeeeeeeeccccCCCCceEEE
Confidence            5688999998765 45566765431           23344333      2335579999999987764     345789


Q ss_pred             EEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC
Q 044568           67 IERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE  146 (257)
Q Consensus        67 V~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~  146 (257)
                      ||||++ ++|.+++.......+++.++..++.|++.||.|||++   +++|+||+|+||+++.++.+||+|||++.....
T Consensus        85 v~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dikp~Nili~~~~~~kl~dfg~~~~~~~  160 (288)
T cd07863          85 VFEHVD-QDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHAN---CIVHRDLKPENILVTSGGQVKLADFGLARIYSC  160 (288)
T ss_pred             EEcccc-cCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEECccCccccccC
Confidence            999997 5899998764556699999999999999999999999   999999999999999999999999999875432


Q ss_pred             Cc--ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhh------
Q 044568          147 DF--VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNK------  218 (257)
Q Consensus       147 ~~--~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~------  218 (257)
                      ..  ....++..|+|||.+.+..++.++||||+||++|||++|..||................... ....+..      
T Consensus       161 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  239 (288)
T cd07863         161 QMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLP-PEDDWPRDVTLPR  239 (288)
T ss_pred             cccCCCccccccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCCCHHHHHHHHHHHhCCC-ChhhCcccccccc
Confidence            21  33456788999999988889999999999999999999999997552221111111100000 0000000      


Q ss_pred             -hhcCC------CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          219 -LVRGT------KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       219 -~~~~~------~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                       ...+.      .......+.+.+++.+||+.||++|| +.|+++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~~~l~  284 (288)
T cd07863         240 GAFSPRGPRPVQSVVPEIEESGAQLLLEMLTFNPHKRISAFRALQ  284 (288)
T ss_pred             cccCCCCCCchHHhCcCcCHHHHHHHHHHhccCcccCCCHHHHhc
Confidence             00000      11122346788999999999999999 999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=100.00  E-value=3.6e-34  Score=240.52  Aligned_cols=230  Identities=19%  Similarity=0.177  Sum_probs=176.3

Q ss_pred             ccccceeeecccC-CCCCeeeccch---hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHH
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW---TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDI   79 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~   79 (257)
                      +.++.||+++... +..+++|....   ....+.+.  ..-..+.++.|+|++++.+.+......++||||+++|+|.++
T Consensus        15 g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~--~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~   92 (277)
T cd06640          15 GSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQ--QEITVLSQCDSPYVTKYYGSYLKGTKLWIIMEYLGGGSALDL   92 (277)
T ss_pred             CCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHH--HHHHHHHhCCCCCEeeEEEEEEECCEEEEEEecCCCCcHHHH
Confidence            4678999998654 56667775442   11111111  011123378899999999999999999999999999999999


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---cccccCCCC
Q 044568           80 IFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---FVIDKRDKG  156 (257)
Q Consensus        80 l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~~~~~~~~~  156 (257)
                      +.   ...+++.+...++.|++.|+.|+|++   +++|+||+|+||+++.++.++++|||++......   .....++..
T Consensus        93 i~---~~~l~~~~~~~~~~~l~~~l~~lh~~---~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~  166 (277)
T cd06640          93 LR---AGPFDEFQIATMLKEILKGLDYLHSE---KKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPF  166 (277)
T ss_pred             Hh---cCCCCHHHHHHHHHHHHHHHHHHHhC---CccCcCCChhhEEEcCCCCEEEcccccceeccCCccccccccCccc
Confidence            95   34688999999999999999999999   9999999999999999999999999988653321   123356677


Q ss_pred             ccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHH
Q 044568          157 YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKV  236 (257)
Q Consensus       157 ~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  236 (257)
                      |+|||.+.+..++.++|+||||+++|||++|..||........   .    .      .. ............+..+.++
T Consensus       167 y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~---~----~------~~-~~~~~~~~~~~~~~~~~~l  232 (277)
T cd06640         167 WMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMHPMRV---L----F------LI-PKNNPPTLTGEFSKPFKEF  232 (277)
T ss_pred             ccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCCCCCcChHhH---h----h------hh-hcCCCCCCchhhhHHHHHH
Confidence            9999999888889999999999999999999999964421110   0    0      00 0001123344567789999


Q ss_pred             HHHcccCCCCCCC-hHHHHH
Q 044568          237 GLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       237 ~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +.+||+.+|++|| +.++++
T Consensus       233 i~~~l~~~p~~Rp~~~~il~  252 (277)
T cd06640         233 IDACLNKDPSFRPTAKELLK  252 (277)
T ss_pred             HHHHcccCcccCcCHHHHHh
Confidence            9999999999999 999975

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=100.00  E-value=2.6e-34  Score=240.03  Aligned_cols=227  Identities=19%  Similarity=0.260  Sum_probs=174.3

Q ss_pred             ccccceeeecccCCC----CCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEe
Q 044568            4 TKLSNFYRSSFNARN----SPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIER   69 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~----~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E   69 (257)
                      +.++.||+|+.....    ..++|...          +.+|++.+.         ++.|+|++++.+.+...+..++|||
T Consensus        15 g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~---------~l~h~~i~~~~~~~~~~~~~~lv~e   85 (267)
T cd05066          15 GEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMG---------QFDHPNIIHLEGVVTKSKPVMIVTE   85 (267)
T ss_pred             cCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHH---------hCCCCCcceEEEEEecCCccEEEEE
Confidence            568899999865433    35666543          223333333         7789999999999999999999999


Q ss_pred             ecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-
Q 044568           70 PVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-  148 (257)
Q Consensus        70 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-  148 (257)
                      |+++++|.+++.. ....+++.++..++.|++.|+.|||++   +++|+|++|+||+++.++.++++|||.+....... 
T Consensus        86 ~~~~~~L~~~~~~-~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~h~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~  161 (267)
T cd05066          86 YMENGSLDAFLRK-HDGQFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPE  161 (267)
T ss_pred             cCCCCCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeehhhchhcEEECCCCeEEeCCCCcccccccccc
Confidence            9999999999975 445789999999999999999999999   99999999999999999999999999887543221 


Q ss_pred             -----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcC
Q 044568          149 -----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRG  222 (257)
Q Consensus       149 -----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (257)
                           ....++..|++||.+.+..++.++|+||||+++||+++ |..||.......   .. ...         ..... 
T Consensus       162 ~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~~~~---~~-~~~---------~~~~~-  227 (267)
T cd05066         162 AAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEMSNQD---VI-KAI---------EEGYR-  227 (267)
T ss_pred             eeeecCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCcccCCHHH---HH-HHH---------hCCCc-
Confidence                 11122346999999988889999999999999999886 999996442111   00 000         00000 


Q ss_pred             CCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          223 TKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       223 ~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ...+...+..+.+++.+||+.+|.+|| +.++++.|
T Consensus       228 ~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l  263 (267)
T cd05066         228 LPAPMDCPAALHQLMLDCWQKDRNERPKFEQIVSIL  263 (267)
T ss_pred             CCCCCCCCHHHHHHHHHHcccCchhCCCHHHHHHHH
Confidence            112223456789999999999999999 99998864

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=100.00  E-value=2e-34  Score=238.89  Aligned_cols=234  Identities=14%  Similarity=0.155  Sum_probs=176.8

Q ss_pred             ccccceeeeccc-CCCCCeeeccchh---hhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHH
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSWT---ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDI   79 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~   79 (257)
                      +.++.||+++.. ++..+++|.....   ...+...  .....+.++.|+|++++.+.+...+..++||||+++|+|.++
T Consensus        11 g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~--~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~   88 (255)
T cd08219          11 GSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSR--KEAVLLAKMKHPNIVAFKESFEADGHLYIVMEYCDGGDLMQK   88 (255)
T ss_pred             cCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHH--HHHHHHHhCCCCCcceEEEEEEECCEEEEEEeeCCCCcHHHH
Confidence            356778888855 4555666754321   1111111  111133478899999999999999999999999999999999


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc---ccccCCCC
Q 044568           80 IFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF---VIDKRDKG  156 (257)
Q Consensus        80 l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~---~~~~~~~~  156 (257)
                      +.......++......++.|++.|+.|||++   +++|+||+|+||++++++.++++|||.+.......   ....++..
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~---~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~  165 (255)
T cd08219          89 IKLQRGKLFPEDTILQWFVQMCLGVQHIHEK---RVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGAYACTYVGTPY  165 (255)
T ss_pred             HHhccCCCCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCcceEEECCCCcEEEcccCcceeecccccccccccCCcc
Confidence            8754456689999999999999999999999   99999999999999999999999999886543221   23457778


Q ss_pred             ccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHH
Q 044568          157 YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKV  236 (257)
Q Consensus       157 ~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  236 (257)
                      |+|||.+.+..++.++|+||||+++|+|++|..||.......   .....     ....      ....+......+.++
T Consensus       166 ~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~---~~~~~-----~~~~------~~~~~~~~~~~~~~l  231 (255)
T cd08219         166 YVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQANSWKN---LILKV-----CQGS------YKPLPSHYSYELRSL  231 (255)
T ss_pred             ccCHHHHccCCcCchhhhhhhchhheehhhccCCCCCCCHHH---HHHHH-----hcCC------CCCCCcccCHHHHHH
Confidence            999999988889999999999999999999999997542110   00000     0000      002233345678899


Q ss_pred             HHHcccCCCCCCC-hHHHHHh
Q 044568          237 GLWCVQDEPALRP-MKCAVMM  256 (257)
Q Consensus       237 ~~~cl~~~p~~RP-~~ei~~~  256 (257)
                      +.+||+.||++|| +.|++..
T Consensus       232 i~~~l~~~P~~Rp~~~~il~~  252 (255)
T cd08219         232 IKQMFKRNPRSRPSATTILSR  252 (255)
T ss_pred             HHHHHhCCcccCCCHHHHhhc
Confidence            9999999999999 9999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=100.00  E-value=8.6e-35  Score=242.73  Aligned_cols=229  Identities=17%  Similarity=0.113  Sum_probs=174.5

Q ss_pred             ccccceeeeccc-CCCCCeeeccch---------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCC
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW---------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRN   73 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~---------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~   73 (257)
                      +.++.||+|+.. ++..+++|....         .+|+..+         .++.|+|++++.+.+...+..++||||+++
T Consensus        20 g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l---------~~~~h~~ii~~~~~~~~~~~~~iv~e~~~~   90 (267)
T cd06646          20 GTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMV---------KECKHCNIVAYFGSYLSREKLWICMEYCGG   90 (267)
T ss_pred             CCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHH---------HhcCCCCeeeeeEEEEeCCEEEEEEeCCCC
Confidence            568899999964 455566765542         2233333         378999999999999999999999999999


Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---ccc
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---FVI  150 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~~~  150 (257)
                      ++|.+++.  ....+++.++..++.|++.|+.|||++   +++|+|++|.||+++.++.++++|||++......   ...
T Consensus        91 ~~L~~~~~--~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~~~~~  165 (267)
T cd06646          91 GSLQDIYH--VTGPLSELQIAYVCRETLQGLAYLHSK---GKMHRDIKGANILLTDNGDVKLADFGVAAKITATIAKRKS  165 (267)
T ss_pred             CcHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEECCCCCEEECcCccceeecccccccCc
Confidence            99999997  445789999999999999999999999   9999999999999999999999999998754322   123


Q ss_pred             ccCCCCccCccccc---CCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC-CCC
Q 044568          151 DKRDKGYMAPECYK---RTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT-KVD  226 (257)
Q Consensus       151 ~~~~~~~~aPE~~~---~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  226 (257)
                      ..++..|+|||.+.   ...++.++|+||||+++|||++|..||..........   .+     ...   ....+. ...
T Consensus       166 ~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~~~~~~~~~~---~~-----~~~---~~~~~~~~~~  234 (267)
T cd06646         166 FIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRALF---LM-----SKS---NFQPPKLKDK  234 (267)
T ss_pred             cccCccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCCCccccchhhhhe---ee-----ecC---CCCCCCCccc
Confidence            45677899999885   3447789999999999999999999996432111100   00     000   000000 111


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          227 KKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       227 ~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ......+.+++.+||+.+|++|| ++++++.|
T Consensus       235 ~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~l  266 (267)
T cd06646         235 TKWSSTFHNFVKISLTKNPKKRPTAERLLTHL  266 (267)
T ss_pred             cccCHHHHHHHHHHhhCChhhCcCHHHHhcCC
Confidence            22346788999999999999999 99998754

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=100.00  E-value=2.9e-35  Score=253.36  Aligned_cols=235  Identities=14%  Similarity=0.122  Sum_probs=174.5

Q ss_pred             cccccceeeeccc-CCCCCeeeccchhh-----hHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCH
Q 044568            3 CTKLSNFYRSSFN-ARNSPWISRVSWTA-----DIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSL   76 (257)
Q Consensus         3 ~~~~~~~y~~~~~-~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL   76 (257)
                      .+.++.||+++.. ++..+++|......     ..+.+.  .....+....|+|++++...+...+..++||||+++|+|
T Consensus        11 ~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~--~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L   88 (330)
T cd05601          11 RGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFE--EERDILSISNSPWIPQLQYAFQDKDNLYLVMEYQPGGDL   88 (330)
T ss_pred             eccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHH--HHHHHHHhCCCCCCcceeeEEecCCeEEEEECCCCCCCH
Confidence            3568899999865 45556777655311     111111  111123367899999999999999999999999999999


Q ss_pred             HHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc----cccc
Q 044568           77 TDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF----VIDK  152 (257)
Q Consensus        77 ~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~----~~~~  152 (257)
                      .+++.. ....+++..+..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++.......    ....
T Consensus        89 ~~~l~~-~~~~l~~~~~~~~~~qi~~aL~~lH~~---~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~  164 (330)
T cd05601          89 LSLLNR-YEDQFDEDMAQFYLAELVLAIHSVHQM---GYVHRDIKPENVLIDRTGHIKLADFGSAARLTANKMVNSKLPV  164 (330)
T ss_pred             HHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEcccCchHheEECCCCCEEeccCCCCeECCCCCceeeeccc
Confidence            999975 346799999999999999999999999   99999999999999999999999999987543322    2346


Q ss_pred             CCCCccCccccc------CCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCC
Q 044568          153 RDKGYMAPECYK------RTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVD  226 (257)
Q Consensus       153 ~~~~~~aPE~~~------~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (257)
                      +|+.|+|||.+.      ...++.++||||||+++|||++|+.||.......   ......     .  ....... ...
T Consensus       165 gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~---~~~~i~-----~--~~~~~~~-~~~  233 (330)
T cd05601         165 GTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGTSAK---TYNNIM-----N--FQRFLKF-PED  233 (330)
T ss_pred             CCccccCHHHhccccccccCCCCCcceeecccceeeeeccCCCCCCCCCHHH---HHHHHH-----c--CCCccCC-CCC
Confidence            788999999986      4457899999999999999999999997542111   010000     0  0001110 111


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          227 KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       227 ~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ......+.+++..|++ +|.+|| +.++++
T Consensus       234 ~~~~~~~~~li~~ll~-~p~~R~t~~~l~~  262 (330)
T cd05601         234 PKVSSDFLDLIQSLLC-GQKERLGYEGLCC  262 (330)
T ss_pred             CCCCHHHHHHHHHHcc-ChhhCCCHHHHhC
Confidence            1245678889999998 999999 999874

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.4e-35  Score=257.15  Aligned_cols=220  Identities=15%  Similarity=0.148  Sum_probs=168.4

Q ss_pred             ccccceeeecccC-CCCCeeeccch------------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||+++... +..+++|...-            .+|++++         ..+.|+|++++.+.+...+..++||||
T Consensus        12 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il---------~~l~h~~iv~~~~~~~~~~~~~lv~E~   82 (364)
T cd05599          12 GAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDIL---------AEADNPWVVKLYYSFQDENYLYLIMEY   82 (364)
T ss_pred             cCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHH---------HhCCCCCCcceEEEEEcCCeEEEEECC
Confidence            5688999999754 56677776542            1233333         377899999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc--
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF--  148 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~--  148 (257)
                      +++|+|.+++.  ....+++..+..++.|++.||.|||++   +++||||||+||+++.++.++|+|||++.......  
T Consensus        83 ~~~g~L~~~l~--~~~~l~~~~~~~~~~qi~~aL~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~  157 (364)
T cd05599          83 LPGGDMMTLLM--KKDTFTEEETRFYIAETILAIDSIHKL---GYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKSHRT  157 (364)
T ss_pred             CCCcHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeEECCCCCEEEeecccceeccccccc
Confidence            99999999997  445799999999999999999999999   99999999999999999999999999876422110  


Q ss_pred             ---------------------------------------ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCC
Q 044568          149 ---------------------------------------VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRK  189 (257)
Q Consensus       149 ---------------------------------------~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~  189 (257)
                                                             ....||+.|+|||++.+..++.++|||||||++|||++|..
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~G~~  237 (364)
T cd05599         158 EFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEMLVGYP  237 (364)
T ss_pred             cccccccccccccccccccccccccccccchhhcccccccccccCccccCHHHHcCCCCCCeeeeecchhHHHHhhcCCC
Confidence                                                   12358889999999998889999999999999999999999


Q ss_pred             CCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC
Q 044568          190 NMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP  249 (257)
Q Consensus       190 pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP  249 (257)
                      ||...........+..|.         ..+.-  .......+.+.+++.+|+. +|.+|+
T Consensus       238 Pf~~~~~~~~~~~i~~~~---------~~~~~--~~~~~~s~~~~~li~~ll~-~p~~R~  285 (364)
T cd05599         238 PFCSDNPQETYRKIINWK---------ETLQF--PDEVPLSPEAKDLIKRLCC-EAERRL  285 (364)
T ss_pred             CCCCCCHHHHHHHHHcCC---------CccCC--CCCCCCCHHHHHHHHHHcc-CHhhcC
Confidence            997552211111110000         00000  0111234567788888986 899988

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=100.00  E-value=3.6e-34  Score=239.28  Aligned_cols=237  Identities=16%  Similarity=0.197  Sum_probs=173.6

Q ss_pred             ccccceeeecccCC----CCCeeeccchhh--hHHHHhHhhhccccccccCCceeeeceeeeecCc------eeEEEeec
Q 044568            4 TKLSNFYRSSFNAR----NSPWISRVSWTA--DIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSV------SGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~~~----~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~------~~lV~E~~   71 (257)
                      +.++.||+|+....    ..+++|......  .-+..........+..+.|+|++++.+.+...+.      .++||||+
T Consensus        10 G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~   89 (273)
T cd05035          10 GEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIPKPMVILPFM   89 (273)
T ss_pred             CCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCcccEEEEecc
Confidence            46889999987543    346777654210  0000011111113347889999999988766554      78999999


Q ss_pred             CCCCHHHHHhcc----CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC
Q 044568           72 RNGSLTDIIFCS----AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED  147 (257)
Q Consensus        72 ~~gsL~~~l~~~----~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~  147 (257)
                      ++|+|.+++...    ....+++..+..++.|++.||.|||++   +++|+|++|+||++++++.+||+|||+++.....
T Consensus        90 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~  166 (273)
T cd05035          90 KHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNR---NFIHRDLAARNCMLREDMTVCVADFGLSKKIYSG  166 (273)
T ss_pred             CCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhC---CeeccccchheEEECCCCeEEECCccceeecccc
Confidence            999999998542    234689999999999999999999999   9999999999999999999999999998754322


Q ss_pred             c-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc
Q 044568          148 F-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR  221 (257)
Q Consensus       148 ~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (257)
                      .     .....+..|++||.+....++.++||||||+++||+++ |..||.......    ....   .. ..      .
T Consensus       167 ~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~~~~----~~~~---~~-~~------~  232 (273)
T cd05035         167 DYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVENHE----IYDY---LR-HG------N  232 (273)
T ss_pred             ccccccccccCCccccCHhhcccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCHHH----HHHH---HH-cC------C
Confidence            1     11233457999999988889999999999999999999 888886542111    0000   00 00      0


Q ss_pred             CCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          222 GTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       222 ~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ....+......+.+++.+||+.||.+|| +.|+++.|
T Consensus       233 ~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~e~~~~l  269 (273)
T cd05035         233 RLKQPEDCLDELYDLMYSCWRADPKDRPTFTKLREVL  269 (273)
T ss_pred             CCCCCcCCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            1123344567899999999999999999 99998764

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.1e-34  Score=255.74  Aligned_cols=191  Identities=19%  Similarity=0.190  Sum_probs=163.2

Q ss_pred             cccCCceeeeceeeeecCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCc
Q 044568           45 RIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQN  124 (257)
Q Consensus        45 ~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~n  124 (257)
                      -+.|+|++.++..+.+..+.|+|.||+++|-|.+++-  ..+.+++.++.+++.||+.|+.|+|..   +|+|||+||+|
T Consensus        68 Li~HpnVl~LydVwe~~~~lylvlEyv~gGELFdylv--~kG~l~e~eaa~ff~QIi~gv~yCH~~---~icHRDLKpEN  142 (786)
T KOG0588|consen   68 LIEHPNVLRLYDVWENKQHLYLVLEYVPGGELFDYLV--RKGPLPEREAAHFFRQILDGVSYCHAF---NICHRDLKPEN  142 (786)
T ss_pred             HhcCCCeeeeeeeeccCceEEEEEEecCCchhHHHHH--hhCCCCCHHHHHHHHHHHHHHHHHhhh---cceeccCCchh
Confidence            6779999999999999999999999999999999998  678899999999999999999999999   99999999999


Q ss_pred             eeeCCCCceEEeeecccccCCC--CcccccCCCCccCcccccCCCCC-ccccchhHHHHHHHHHhcCCCCCcCCCChhhH
Q 044568          125 ILMDEFWTAKILDFGLAKLPNE--DFVIDKRDKGYMAPECYKRTPIS-VKADVYGYGIVLLETICCRKNMEIDASKPEEI  201 (257)
Q Consensus       125 il~~~~~~~kl~dfg~~~~~~~--~~~~~~~~~~~~aPE~~~~~~~~-~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~  201 (257)
                      +|++..+.+||+|||++.....  -....+|++.|.+||++.+.+|. .++||||+|+++|.+++|+.||++++      
T Consensus       143 lLLd~~~nIKIADFGMAsLe~~gklLeTSCGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFdDdN------  216 (786)
T KOG0588|consen  143 LLLDVKNNIKIADFGMASLEVPGKLLETSCGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFDDDN------  216 (786)
T ss_pred             hhhhcccCEeeeccceeecccCCccccccCCCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCCCcc------
Confidence            9999999999999999875433  34677999999999999999985 88999999999999999999998541      


Q ss_pred             HHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          202 ILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                       ++.. ......+..       .+|...+.+.-+|+.+|+..||+.|- ++||++
T Consensus       217 -ir~L-LlKV~~G~f-------~MPs~Is~eaQdLLr~ml~VDp~~RiT~~eI~k  262 (786)
T KOG0588|consen  217 -IRVL-LLKVQRGVF-------EMPSNISSEAQDLLRRMLDVDPSTRITTEEILK  262 (786)
T ss_pred             -HHHH-HHHHHcCcc-------cCCCcCCHHHHHHHHHHhccCccccccHHHHhh
Confidence             1111 011111111       34555667778888999999999999 999975

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=100.00  E-value=1.4e-34  Score=248.82  Aligned_cols=246  Identities=14%  Similarity=0.093  Sum_probs=172.4

Q ss_pred             cccceeeeccc-CCCCCeeeccchh---h-hHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHH
Q 044568            5 KLSNFYRSSFN-ARNSPWISRVSWT---A-DIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDI   79 (257)
Q Consensus         5 ~~~~~y~~~~~-~~~~~~i~~~~~~---~-~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~   79 (257)
                      ++..||++... +++.+++|.....   + ..+.+..  .-..+..+.|+||+++.+.+...+..++||||+++|+|.++
T Consensus        12 ~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~--e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~l~~~   89 (327)
T cd08227          12 DLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQG--ELHVSKLFNHPNIVPYRATFIADNELWVVTSFMAYGSAKDL   89 (327)
T ss_pred             ceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHH--HHHHHHhcCCCCeeeEEEEEEECCEEEEEEeccCCCcHHHH
Confidence            56789998864 5566778876532   1 1111110  01123367899999999999999999999999999999999


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC----------cc
Q 044568           80 IFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED----------FV  149 (257)
Q Consensus        80 l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~----------~~  149 (257)
                      +.......+++..+..++.|++.||.|||++   +++||||||+||+++.++.++++||+........          ..
T Consensus        90 ~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  166 (327)
T cd08227          90 ICTHFMDGMSELAIAYILQGVLKALDYIHHM---GYVHRSVKASHILISVDGKVYLSGLRSNLSMINHGQRLRVVHDFPK  166 (327)
T ss_pred             HHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCChhhEEEecCCcEEEcccchhhccccccccccccccccc
Confidence            9754456699999999999999999999999   9999999999999999999999999754322111          11


Q ss_pred             cccCCCCccCcccccC--CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhh------hhhhhh----
Q 044568          150 IDKRDKGYMAPECYKR--TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCF------INRELN----  217 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~--~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~------~~~~~~----  217 (257)
                      ...++..|+|||.+.+  ..++.++|||||||++||+++|+.||.................+..      ...+..    
T Consensus       167 ~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (327)
T cd08227         167 YSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLDTTTIPAEELTMKPS  246 (327)
T ss_pred             cccceecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCCCCCcchhHHHHHHhcCCccccccccchhhhhcccCCc
Confidence            2244567999999876  3588999999999999999999999974321110000000000000      000000    


Q ss_pred             ---------hh-----hcC-------CCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          218 ---------KL-----VRG-------TKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       218 ---------~~-----~~~-------~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                               ..     ..+       ........+.+.+++.+||+.||++|| ++|+++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~ell~  306 (327)
T cd08227         247 RSGANSGLGESTTVSTPRPSNGESSSHPYNRTFSPHFHHFVEQCLQRNPDARPSASTLLN  306 (327)
T ss_pred             ccCCcCCCCcccccCCcCccccCCcccccccccCHHHHHHHHHHHhhCchhcCCHHHHhc
Confidence                     00     000       011223346789999999999999999 999975

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=100.00  E-value=2.3e-34  Score=242.91  Aligned_cols=225  Identities=18%  Similarity=0.201  Sum_probs=174.0

Q ss_pred             ccccceeeecccC-CCCCeeeccch------------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||+++... ++.+++|...-            .+|++.         +.+++|++++.+...+...+..++||||
T Consensus        11 G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~i---------l~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05632          11 GGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQI---------LEKVNSQFVVNLAYAYETKDALCLVLTI   81 (285)
T ss_pred             CCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHH---------HHHcCCcCceeEEEEEecCCEEEEEEEe
Confidence            5688999998764 45566765431            223333         3388899999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC--Cc
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE--DF  148 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~--~~  148 (257)
                      +++++|.+++.......+++..+..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||++.....  ..
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~---~iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~  158 (285)
T cd05632          82 MNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRE---NTVYRDLKPENILLDDYGHIRISDLGLAVKIPEGESI  158 (285)
T ss_pred             ccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCCHHHEEECCCCCEEEecCCcceecCCCCcc
Confidence            9999999998754456799999999999999999999999   999999999999999999999999998864332  12


Q ss_pred             ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHH
Q 044568          149 VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKK  228 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (257)
                      ....++..|+|||.+.+..++.++|+||||+++||+++|..||........   ...+..      .....  ....+..
T Consensus       159 ~~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~~~~~~---~~~~~~------~~~~~--~~~~~~~  227 (285)
T cd05632         159 RGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKEKVK---REEVDR------RVLET--EEVYSAK  227 (285)
T ss_pred             cCCCCCcCccChHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHHHH---HHHHHH------hhhcc--ccccCcc
Confidence            334678899999999888899999999999999999999999975421111   111100      00000  0122333


Q ss_pred             HHHHHHHHHHHcccCCCCCCC-hH
Q 044568          229 NLENLVKVGLWCVQDEPALRP-MK  251 (257)
Q Consensus       229 ~~~~l~~l~~~cl~~~p~~RP-~~  251 (257)
                      ....+.+++..||+.||++|| +.
T Consensus       228 ~~~~~~~li~~~l~~~P~~R~~~~  251 (285)
T cd05632         228 FSEEAKSICKMLLTKDPKQRLGCQ  251 (285)
T ss_pred             CCHHHHHHHHHHccCCHhHcCCCc
Confidence            456788999999999999999 65

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=100.00  E-value=1.9e-34  Score=252.07  Aligned_cols=226  Identities=13%  Similarity=0.106  Sum_probs=170.1

Q ss_pred             ccccceeeecccCC-CCCeeeccch------------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFNAR-NSPWISRVSW------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~~~-~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||+++...+ +.+++|....            .+|++         ....+.|+|++++.+.+...+..++||||
T Consensus        54 G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~---------i~~~~~hp~iv~~~~~~~~~~~~~lv~Ey  124 (370)
T cd05621          54 GAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERD---------IMAFANSPWVVQLFCAFQDDKYLYMVMEY  124 (370)
T ss_pred             cCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHH---------HHHhCCCCCEeeEEEEEEcCCEEEEEEcC
Confidence            56889999997654 4556665431            12222         23378899999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc--
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF--  148 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~--  148 (257)
                      +++|+|.+++..   ..+++..+..++.|++.||.|||++   +|+||||||+||+++.++.+||+|||++.......  
T Consensus       125 ~~gg~L~~~l~~---~~~~~~~~~~~~~qil~aL~~LH~~---~IvHrDLKp~NILl~~~~~~kL~DFG~a~~~~~~~~~  198 (370)
T cd05621         125 MPGGDLVNLMSN---YDVPEKWAKFYTAEVVLALDAIHSM---GLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDETGMV  198 (370)
T ss_pred             CCCCcHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHEEECCCCCEEEEecccceecccCCce
Confidence            999999999953   4588999999999999999999999   99999999999999999999999999987543222  


Q ss_pred             --ccccCCCCccCcccccCCC----CCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcC
Q 044568          149 --VIDKRDKGYMAPECYKRTP----ISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRG  222 (257)
Q Consensus       149 --~~~~~~~~~~aPE~~~~~~----~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (257)
                        ....+|+.|+|||.+.+..    ++.++|+||+||++|||++|..||.......   ......     ...  .... 
T Consensus       199 ~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~~~~~~~---~~~~i~-----~~~--~~~~-  267 (370)
T cd05621         199 RCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYADSLVG---TYSKIM-----DHK--NSLN-  267 (370)
T ss_pred             ecccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhCCCCCCCCCHHH---HHHHHH-----hCC--cccC-
Confidence              3456889999999987542    7789999999999999999999997542111   111100     000  0000 


Q ss_pred             CCCCHHHHHHHHHHHHHcccCCCCC--CC-hHHHHH
Q 044568          223 TKVDKKNLENLVKVGLWCVQDEPAL--RP-MKCAVM  255 (257)
Q Consensus       223 ~~~~~~~~~~l~~l~~~cl~~~p~~--RP-~~ei~~  255 (257)
                      .+........+.+++..|+..+|.+  || +.|+++
T Consensus       268 ~p~~~~~s~~~~~li~~~L~~~~~r~~R~~~~e~l~  303 (370)
T cd05621         268 FPEDVEISKHAKNLICAFLTDREVRLGRNGVEEIKQ  303 (370)
T ss_pred             CCCcccCCHHHHHHHHHHccCchhccCCCCHHHHhc
Confidence            0111223566788888999865544  89 999875

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.9e-35  Score=255.93  Aligned_cols=233  Identities=13%  Similarity=0.088  Sum_probs=169.6

Q ss_pred             ccccceeeeccc-CCCCCeeeccchhh-----hHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHH
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSWTA-----DIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLT   77 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~   77 (257)
                      +.++.||++... +++.+++|...-..     ..+.+.  ..-..+.++.|+||+++.+.+...+..++||||+++|+|.
T Consensus        12 G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~--~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~E~~~gg~L~   89 (377)
T cd05629          12 GAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVK--AERDVLAESDSPWVVSLYYSFQDAQYLYLIMEFLPGGDLM   89 (377)
T ss_pred             cCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHH--HHHHHHHhCCCCCcceEEEEEEcCCeeEEEEeCCCCCcHH
Confidence            568899998754 55566777653211     111111  0011233788999999999999999999999999999999


Q ss_pred             HHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC----------
Q 044568           78 DIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED----------  147 (257)
Q Consensus        78 ~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~----------  147 (257)
                      +++.  ....+++..+..++.|++.||.|||++   +++||||||+||+++.++.++|+|||++......          
T Consensus        90 ~~l~--~~~~~~~~~~~~~~~ql~~aL~~LH~~---givHrDlkp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~~  164 (377)
T cd05629          90 TMLI--KYDTFSEDVTRFYMAECVLAIEAVHKL---GFIHRDIKPDNILIDRGGHIKLSDFGLSTGFHKQHDSAYYQKLL  164 (377)
T ss_pred             HHHH--hcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEECCCCCEEEeecccccccccccccccccccc
Confidence            9997  456789999999999999999999999   9999999999999999999999999988521100          


Q ss_pred             ----------------------------------------cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhc
Q 044568          148 ----------------------------------------FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICC  187 (257)
Q Consensus       148 ----------------------------------------~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g  187 (257)
                                                              .....||+.|+|||.+.+..++.++|||||||++|||++|
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltG  244 (377)
T cd05629         165 QGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWWSLGAIMFECLIG  244 (377)
T ss_pred             cccccccccccccccccccccccccchhhhhhhhhcccccccccCCCccccCHHHHccCCCCCceeeEecchhhhhhhcC
Confidence                                                    0013578899999999988899999999999999999999


Q ss_pred             CCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCC---CC-hHHHHH
Q 044568          188 RKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPAL---RP-MKCAVM  255 (257)
Q Consensus       188 ~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~---RP-~~ei~~  255 (257)
                      ..||...........+..|.          ..+. .+........+.+++.+|+. +|.+   || +.|+++
T Consensus       245 ~~Pf~~~~~~~~~~~i~~~~----------~~~~-~p~~~~~s~~~~dli~~lL~-~~~~r~~r~~~~~~l~  304 (377)
T cd05629         245 WPPFCSENSHETYRKIINWR----------ETLY-FPDDIHLSVEAEDLIRRLIT-NAENRLGRGGAHEIKS  304 (377)
T ss_pred             CCCCCCCCHHHHHHHHHccC----------CccC-CCCCCCCCHHHHHHHHHHhc-CHhhcCCCCCHHHHhc
Confidence            99997552211111111110          0000 00011234567888889997 6665   57 777764

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=100.00  E-value=3.1e-34  Score=239.86  Aligned_cols=227  Identities=17%  Similarity=0.146  Sum_probs=170.7

Q ss_pred             ccccceeeecccC-CCCCeeeccc--------hhhhHHHHhHhhhccccccc-cCCceeeeceeeeec------CceeEE
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS--------WTADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLT------SVSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~------~~~~lV   67 (257)
                      +.++.||+|.... +..+++|...        +.++++.+.         ++ .|+|++++.+.+...      +..++|
T Consensus        17 g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~---------~~~~h~~i~~~~~~~~~~~~~~~~~~~~iv   87 (272)
T cd06637          17 GTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLK---------KYSHHRNIATYYGAFIKKNPPGMDDQLWLV   87 (272)
T ss_pred             cCCeEEEEEEEcCCCcEEEEEEEEcCCccHHHHHHHHHHHH---------HhcCCCCeeeEeeEEeecCCCCCCcEEEEE
Confidence            4678999998654 4445666543        223333332         44 599999999988753      457899


Q ss_pred             EeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC-
Q 044568           68 ERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE-  146 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~-  146 (257)
                      |||+++|+|.+++.......+++..+..++.|++.|+.|||++   +++|+|++|+||++++++.++|+|||++..... 
T Consensus        88 ~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~---~ivh~dl~~~nili~~~~~~~l~Dfg~~~~~~~~  164 (272)
T cd06637          88 MEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQH---KVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRT  164 (272)
T ss_pred             EEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHEEECCCCCEEEccCCCceecccc
Confidence            9999999999999864456789999999999999999999999   999999999999999999999999999875332 


Q ss_pred             --CcccccCCCCccCccccc-----CCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhh
Q 044568          147 --DFVIDKRDKGYMAPECYK-----RTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKL  219 (257)
Q Consensus       147 --~~~~~~~~~~~~aPE~~~-----~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (257)
                        ......++..|+|||.+.     ...++.++|+||||+++|||++|..||..........       ..  .    ..
T Consensus       165 ~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~~~~~~~~-------~~--~----~~  231 (272)
T cd06637         165 VGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALF-------LI--P----RN  231 (272)
T ss_pred             cccCCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCccccCHHHHHH-------HH--h----cC
Confidence              223446778899999986     2357889999999999999999999996431111000       00  0    00


Q ss_pred             hcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          220 VRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       220 ~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ..........+..+.+++.+||+.+|.+|| +.|+++
T Consensus       232 ~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~  268 (272)
T cd06637         232 PAPRLKSKKWSKKFQSFIESCLVKNHSQRPTTEQLMK  268 (272)
T ss_pred             CCCCCCCCCcCHHHHHHHHHHcCCChhhCCCHHHHhh
Confidence            001111223446789999999999999999 999975

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=3.9e-34  Score=238.61  Aligned_cols=224  Identities=18%  Similarity=0.186  Sum_probs=175.4

Q ss_pred             ccccceeeeccc-CCCCCeeeccc------------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCce
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS------------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVS   64 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~------------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~   64 (257)
                      +.++.||+|... .+..+++|...                  +.+|++.+.         ++.|+|++++.+.+...+..
T Consensus        11 g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~---------~l~h~~i~~~~~~~~~~~~~   81 (267)
T cd06628          11 GSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLK---------ELQHENIVQYLGSSLDADHL   81 (267)
T ss_pred             CCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHH---------hcCCCCeeeEEEEEEeCCcc
Confidence            457889999864 45556666432                  223333333         88899999999999999999


Q ss_pred             eEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccC
Q 044568           65 GKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLP  144 (257)
Q Consensus        65 ~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~  144 (257)
                      ++||||+++++|.+++.  ....+++..+..++.|++.|+.|||++   +++|+||+|+||++++++.++|+|||.++..
T Consensus        82 ~lv~e~~~~~~L~~~l~--~~~~l~~~~~~~~~~~l~~~l~~lH~~---~ivH~di~p~nil~~~~~~~~l~dfg~~~~~  156 (267)
T cd06628          82 NIFLEYVPGGSVAALLN--NYGAFEETLVRNFVRQILKGLNYLHNR---GIIHRDIKGANILVDNKGGIKISDFGISKKL  156 (267)
T ss_pred             EEEEEecCCCCHHHHHH--hccCccHHHHHHHHHHHHHHHHHHHhc---CcccccCCHHHEEEcCCCCEEecccCCCccc
Confidence            99999999999999997  346688999999999999999999999   9999999999999999999999999988754


Q ss_pred             CCCc---------ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhh
Q 044568          145 NEDF---------VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRE  215 (257)
Q Consensus       145 ~~~~---------~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~  215 (257)
                      ....         ....++..|+|||.+.+..++.++|+||+|+++|++++|+.||.......   ...          .
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~---~~~----------~  223 (267)
T cd06628         157 EANSLSTKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDCTQLQ---AIF----------K  223 (267)
T ss_pred             ccccccCCccccccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCCCccHHH---HHH----------H
Confidence            3211         12346678999999988888999999999999999999999997541110   000          0


Q ss_pred             hhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          216 LNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       216 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .... .....+...+..+.+++.+||+.||.+|| +.|+++
T Consensus       224 ~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  263 (267)
T cd06628         224 IGEN-ASPEIPSNISSEAIDFLEKTFEIDHNKRPTAAELLK  263 (267)
T ss_pred             Hhcc-CCCcCCcccCHHHHHHHHHHccCCchhCcCHHHHhh
Confidence            0010 11123344567889999999999999999 999986

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=100.00  E-value=2.4e-34  Score=241.52  Aligned_cols=230  Identities=20%  Similarity=0.194  Sum_probs=174.7

Q ss_pred             ccccceeeecccC-CCCCeeeccchh---hhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHH
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSWT---ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDI   79 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~   79 (257)
                      +.++.||+|.... +..+++|.....   ...+.+.  ..-..+.++.|+|++++.+.+...+..++||||+++++|.++
T Consensus        15 g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~--~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~   92 (277)
T cd06642          15 GSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQ--QEITVLSQCDSPYITRYYGSYLKGTKLWIIMEYLGGGSALDL   92 (277)
T ss_pred             CCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHH--HHHHHHHcCCCCccHhhhcccccCCceEEEEEccCCCcHHHH
Confidence            4678999998654 455677754421   1111111  000133388999999999999999999999999999999999


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc---ccccCCCC
Q 044568           80 IFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF---VIDKRDKG  156 (257)
Q Consensus        80 l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~---~~~~~~~~  156 (257)
                      +.   ...+++..+..++.|++.|+.|||++   +++|+||+|+||++++++.++++|||++.......   ....++..
T Consensus        93 ~~---~~~~~~~~~~~~~~~i~~~l~~lH~~---~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~  166 (277)
T cd06642          93 LK---PGPLEETYIATILREILKGLDYLHSE---RKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPF  166 (277)
T ss_pred             hh---cCCCCHHHHHHHHHHHHHHHHHHhcC---CeeccCCChheEEEeCCCCEEEccccccccccCcchhhhcccCccc
Confidence            85   35689999999999999999999999   99999999999999999999999999886543321   22346777


Q ss_pred             ccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHH
Q 044568          157 YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKV  236 (257)
Q Consensus       157 ~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  236 (257)
                      |+|||.+.+..++.++|+||||+++||+++|+.||........   .. .         ..... ........+..+.++
T Consensus       167 y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~---~~-~---------~~~~~-~~~~~~~~~~~~~~l  232 (277)
T cd06642         167 WMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLHPMRV---LF-L---------IPKNS-PPTLEGQYSKPFKEF  232 (277)
T ss_pred             ccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCcccchhhH---Hh-h---------hhcCC-CCCCCcccCHHHHHH
Confidence            9999999888889999999999999999999999964321110   00 0         00000 011223345678899


Q ss_pred             HHHcccCCCCCCC-hHHHHH
Q 044568          237 GLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       237 ~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +.+||+.+|.+|| +.|+++
T Consensus       233 i~~~l~~~p~~Rp~~~~il~  252 (277)
T cd06642         233 VEACLNKDPRFRPTAKELLK  252 (277)
T ss_pred             HHHHccCCcccCcCHHHHHH
Confidence            9999999999999 999986

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=100.00  E-value=4.9e-34  Score=238.37  Aligned_cols=227  Identities=18%  Similarity=0.184  Sum_probs=172.9

Q ss_pred             ccccceeeecccCC-CCCeeeccc---------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCC
Q 044568            4 TKLSNFYRSSFNAR-NSPWISRVS---------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRN   73 (257)
Q Consensus         4 ~~~~~~y~~~~~~~-~~~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~   73 (257)
                      +.++.||+|+...+ ..+++|...         +.+|++.+.         +++|+|++++.+.+...+..++|+||+++
T Consensus        19 g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~---------~l~h~~iv~~~~~~~~~~~~~lv~e~~~~   89 (268)
T cd06624          19 GTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHS---------YLKHRNIVQYLGSDSENGFFKIFMEQVPG   89 (268)
T ss_pred             CCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHH---------hcCCCCeeeeeeeeccCCEEEEEEecCCC
Confidence            56889999996544 445666533         234444444         88999999999999999999999999999


Q ss_pred             CCHHHHHhccCCCCC--CHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCC-CCceEEeeecccccCCCC---
Q 044568           74 GSLTDIIFCSAERNP--YWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE-FWTAKILDFGLAKLPNED---  147 (257)
Q Consensus        74 gsL~~~l~~~~~~~l--~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~-~~~~kl~dfg~~~~~~~~---  147 (257)
                      ++|.+++.. ....+  ++..+..++.|++.|+.|||++   +++|+|++|+||+++. .+.++|+|||.+......   
T Consensus        90 ~~L~~~l~~-~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~h~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~~~  165 (268)
T cd06624          90 GSLSALLRS-KWGPLKDNEQTIIFYTKQILEGLKYLHDN---QIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLAGINPC  165 (268)
T ss_pred             CCHHHHHHH-hcccCCCcHHHHHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEcCCCCeEEEecchhheecccCCCc
Confidence            999999975 22344  7788889999999999999999   9999999999999976 678999999987643221   


Q ss_pred             cccccCCCCccCcccccCCC--CCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCC
Q 044568          148 FVIDKRDKGYMAPECYKRTP--ISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKV  225 (257)
Q Consensus       148 ~~~~~~~~~~~aPE~~~~~~--~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (257)
                      .....++..|+|||.+....  ++.++|+||||+++|++++|..||.........    .+...        ..-.....
T Consensus       166 ~~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~~~~~----~~~~~--------~~~~~~~~  233 (268)
T cd06624         166 TETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIELGEPQAA----MFKVG--------MFKIHPEI  233 (268)
T ss_pred             cccCCCCccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCccccChhhh----Hhhhh--------hhccCCCC
Confidence            22345678899999987643  788999999999999999999999643211110    00000        00011123


Q ss_pred             CHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          226 DKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       226 ~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +....+.+.+++.+||+.+|.+|| +.|+++
T Consensus       234 ~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~  264 (268)
T cd06624         234 PESLSAEAKNFILRCFEPDPDKRASAHDLLQ  264 (268)
T ss_pred             CcccCHHHHHHHHHHcCCCchhCCCHHHHHh
Confidence            444567789999999999999999 999975

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=100.00  E-value=4.4e-34  Score=241.88  Aligned_cols=203  Identities=18%  Similarity=0.230  Sum_probs=157.2

Q ss_pred             cccCCceeeeceeeeecCceeEEEeecCCCCHHHHHhccC---------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCe
Q 044568           45 RIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSA---------ERNPYWNQRVRIALDVAKGILYLHDECEPPI  115 (257)
Q Consensus        45 ~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i  115 (257)
                      ++.|+|++++.+.+...+..++||||+++++|.+++....         ...+++..+..++.|++.||.|||++   ++
T Consensus        75 ~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~---~i  151 (296)
T cd05051          75 RLSDPNIARLLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESL---NF  151 (296)
T ss_pred             hcCCCCEeEEEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHc---Cc
Confidence            8889999999999999999999999999999999997532         12689999999999999999999999   99


Q ss_pred             eeccCCCCceeeCCCCceEEeeecccccCCCCc-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh--cC
Q 044568          116 LHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC--CR  188 (257)
Q Consensus       116 ~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~--g~  188 (257)
                      +|+||+|+||+++.++.++++|||++.......     ....++..|+|||.+....++.++||||||+++||+++  |.
T Consensus       152 ~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~  231 (296)
T cd05051         152 VHRDLATRNCLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCRE  231 (296)
T ss_pred             cccccchhceeecCCCceEEccccceeecccCcceeecCcCCCCceecCHHHhhcCCCCccchhhhhHHHHHHHHhcCCC
Confidence            999999999999999999999999987532221     22344567999999988889999999999999999998  67


Q ss_pred             CCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          189 KNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       189 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      .||.....   ...+... ...+.......   ....+...+.++.+++.+||+.||++|| +.||++.|
T Consensus       232 ~p~~~~~~---~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~l~~li~~cl~~~p~~Rpt~~el~~~L  294 (296)
T cd05051         232 QPYEHLTD---QQVIENA-GHFFRDDGRQI---YLPRPPNCPKDIYELMLECWRRDEEDRPTFREIHLFL  294 (296)
T ss_pred             CCCCCcCh---HHHHHHH-Hhccccccccc---cCCCccCCCHHHHHHHHHHhccChhcCCCHHHHHHHh
Confidence            77754311   1111111 01100000000   0112233457899999999999999999 99999875

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=4.3e-34  Score=242.25  Aligned_cols=235  Identities=16%  Similarity=0.206  Sum_probs=172.4

Q ss_pred             ccccceeeecccCCC---------------CCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceee
Q 044568            4 TKLSNFYRSSFNARN---------------SPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRA   58 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~---------------~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~   58 (257)
                      +.++.||++......               .+++|...          +.+|++.+.         +++|+|++++.+.+
T Consensus        16 G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~---------~l~h~~i~~~~~~~   86 (295)
T cd05097          16 GQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMS---------RLKNPNIIRLLGVC   86 (295)
T ss_pred             CCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHH---------hCCCCCcCeEEEEE
Confidence            467888887654321               24565433          334555555         88999999999999


Q ss_pred             eecCceeEEEeecCCCCHHHHHhccC----------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeC
Q 044568           59 KLTSVSGKIERPVRNGSLTDIIFCSA----------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD  128 (257)
Q Consensus        59 ~~~~~~~lV~E~~~~gsL~~~l~~~~----------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~  128 (257)
                      ...+..++||||+++++|.+++....          ...+++..+..++.|++.|+.|||++   +++|+|++|+||+++
T Consensus        87 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~i~H~dlkp~Nill~  163 (295)
T cd05097          87 VSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASL---NFVHRDLATRNCLVG  163 (295)
T ss_pred             cCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhc---CeeccccChhhEEEc
Confidence            99999999999999999999996421          12468889999999999999999999   999999999999999


Q ss_pred             CCCceEEeeecccccCCCCc-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh--cCCCCCcCCCChhhH
Q 044568          129 EFWTAKILDFGLAKLPNEDF-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC--CRKNMEIDASKPEEI  201 (257)
Q Consensus       129 ~~~~~kl~dfg~~~~~~~~~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~--g~~pf~~~~~~~~~~  201 (257)
                      .++.+||+|||++.......     ....++..|+|||.+.+..++.++|+||||+++|||++  |..||.......   
T Consensus       164 ~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~~~~~---  240 (295)
T cd05097         164 NHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEMFTLCKEQPYSLLSDEQ---  240 (295)
T ss_pred             CCCcEEecccccccccccCcceeccCcCcCceeecChhhhccCCcCchhhHHHHHHHHHHHHHcCCCCCCcccChHH---
Confidence            99999999999886432211     11233557999999988889999999999999999998  566775432111   


Q ss_pred             HHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          202 ILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ...... ........ ...  ...+...+..+.+++.+||+.||++|| +.+|++.|
T Consensus       241 ~~~~~~-~~~~~~~~-~~~--~~~~~~~~~~l~~li~~~l~~~p~~RPs~~~i~~~l  293 (295)
T cd05097         241 VIENTG-EFFRNQGR-QIY--LSQTPLCPSPVFKLMMRCWSRDIKDRPTFNKIHHFL  293 (295)
T ss_pred             HHHHHH-Hhhhhccc-ccc--CCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHH
Confidence            111110 00000000 000  011223456899999999999999999 99999876

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=100.00  E-value=2e-34  Score=240.82  Aligned_cols=232  Identities=16%  Similarity=0.185  Sum_probs=167.2

Q ss_pred             ccccceeeecccCCC---CCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFNARN---SPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~---~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.|+.||+|+...+.   ..++|...          +.++++.+         ..+.|+|++++.+.+...+..++||||
T Consensus         6 G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~---------~~l~h~nii~~~~~~~~~~~~~lv~e~   76 (269)
T cd05042           6 GWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPY---------RELNHPNVLQCLGQCIESIPYLLVLEF   76 (269)
T ss_pred             cCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHH---------HhCCCCCcceEEEEECCCCceEEEEEe
Confidence            468899999765443   23455432          12233332         377899999999999999999999999


Q ss_pred             cCCCCHHHHHhccC---CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC
Q 044568           71 VRNGSLTDIIFCSA---ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED  147 (257)
Q Consensus        71 ~~~gsL~~~l~~~~---~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~  147 (257)
                      +++|+|.+++....   ....++.....++.|++.|+.|||++   +++||||||+||+++.++.+|++|||++......
T Consensus        77 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~  153 (269)
T cd05042          77 CPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQA---DFIHSDLALRNCQLTADLSVKIGDYGLALEQYPE  153 (269)
T ss_pred             CCCCcHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhc---CEecccccHhheEecCCCcEEEeccccccccccc
Confidence            99999999997532   23356778889999999999999999   9999999999999999999999999987643221


Q ss_pred             -----cccccCCCCccCcccccC-------CCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhh
Q 044568          148 -----FVIDKRDKGYMAPECYKR-------TPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINR  214 (257)
Q Consensus       148 -----~~~~~~~~~~~aPE~~~~-------~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~  214 (257)
                           .....++..|+|||++..       ..++.++||||||+++|||++ |..||.......   .....    .. .
T Consensus       154 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~---~~~~~----~~-~  225 (269)
T cd05042         154 DYYITKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDLSDEQ---VLKQV----VR-E  225 (269)
T ss_pred             hheeccCCCCCcccccCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCCCCCCCcCCHHH---HHHHH----hh-c
Confidence                 122234556999998743       346789999999999999999 778886442111   11100    00 0


Q ss_pred             hhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          215 ELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      .... +.....+......+.+++..|| .||++|| ++||+++|
T Consensus       226 ~~~~-~~~~~~~~~~~~~~~~~~~~~~-~dp~~Rpt~~~v~~~l  267 (269)
T cd05042         226 QDIK-LPKPQLDLKYSDRWYEVMQFCW-LDPETRPTAEEVHELL  267 (269)
T ss_pred             cCcc-CCCCcccccCCHHHHHHHHHHh-cCcccccCHHHHHHHh
Confidence            0001 1111223345567788888999 5999999 99999875

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=100.00  E-value=3.9e-34  Score=244.09  Aligned_cols=238  Identities=15%  Similarity=0.185  Sum_probs=174.2

Q ss_pred             ccccceeeecccC-CCCCeeeccch----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +.++.||+++... ++.+++|....          .+|++.+.         +++|+|++++.+.+...+..++||||++
T Consensus        17 G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~~~~~~~lv~e~~~   87 (309)
T cd07872          17 GTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLK---------DLKHANIVTLHDIVHTDKSLTLVFEYLD   87 (309)
T ss_pred             cCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHH---------hCCCCCcceEEEEEeeCCeEEEEEeCCC
Confidence            5688999998654 44567776542          23444433         7889999999999999999999999997


Q ss_pred             CCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---cc
Q 044568           73 NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---FV  149 (257)
Q Consensus        73 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~~  149 (257)
                      + +|.+++.. ....+++..+..++.|++.||.|||++   +++||||+|+||+++.++.++|+|||++......   ..
T Consensus        88 ~-~l~~~~~~-~~~~~~~~~~~~~~~qi~~aL~~lH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~  162 (309)
T cd07872          88 K-DLKQYMDD-CGNIMSMHNVKIFLYQILRGLAYCHRR---KVLHRDLKPQNLLINERGELKLADFGLARAKSVPTKTYS  162 (309)
T ss_pred             C-CHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEECccccceecCCCccccc
Confidence            5 89998875 445688999999999999999999999   9999999999999999999999999998643222   22


Q ss_pred             cccCCCCccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHH-------HHhhhh-hhhhhhh
Q 044568          150 IDKRDKGYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWV-------YKCFIN-RELNKLV  220 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~-------~~~~~~-~~~~~~~  220 (257)
                      ...++..|+|||.+.+ ..++.++|+||+|+++|||++|+.||......+.........       ++.... ......-
T Consensus       163 ~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (309)
T cd07872         163 NEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPTEETWPGISSNDEFKNYN  242 (309)
T ss_pred             cccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHhhhcchhhhhhhh
Confidence            3456788999999865 457899999999999999999999997653222111111000       000000 0000000


Q ss_pred             cCC-------CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          221 RGT-------KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       221 ~~~-------~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .+.       .........+.+++.+||+.||.+|| ++|+++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~  285 (309)
T cd07872         243 FPKYKPQPLINHAPRLDTEGIELLTKFLQYESKKRISAEEAMK  285 (309)
T ss_pred             cCccCCCchhhhccCCCHHHHHHHHHhccCChhhCCCHHHHhc
Confidence            000       00112345678999999999999999 999875

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=100.00  E-value=3.3e-34  Score=244.54  Aligned_cols=239  Identities=18%  Similarity=0.193  Sum_probs=174.7

Q ss_pred             cccccceeeecccCCCC-Ceeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            3 CTKLSNFYRSSFNARNS-PWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         3 ~~~~~~~y~~~~~~~~~-~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      .+.++.||+++...+.. +++|...          +.+|++.+.         ++.|+|++++.+.+...+..++||||+
T Consensus        11 ~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~~~~~~~lv~ey~   81 (308)
T cd06615          11 AGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLH---------ECNSPYIVGFYGAFYSDGEISICMEHM   81 (308)
T ss_pred             CCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHH---------hCCCCCCCeEEEEEeeCCEEEEEeecc
Confidence            35688999998765443 3444332          223333333         889999999999999999999999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhh-CCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC-cc
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHD-ECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED-FV  149 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~-~~  149 (257)
                      ++++|.+++..  ...+++..+..++.|++.||.|||+ .   +++|+|++|+||+++.++.++++|||++...... ..
T Consensus        82 ~~~~L~~~l~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~  156 (308)
T cd06615          82 DGGSLDQVLKK--AGRIPENILGKISIAVLRGLTYLREKH---KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMAN  156 (308)
T ss_pred             CCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhhC---CEEECCCChHHEEEecCCcEEEccCCCcccccccccc
Confidence            99999999973  4678999999999999999999997 5   8999999999999999999999999987643222 23


Q ss_pred             cccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHh-------------------
Q 044568          150 IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKC-------------------  210 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~-------------------  210 (257)
                      ...++..|+|||.+.+..++.++|+||||+++|++++|+.||...................                   
T Consensus       157 ~~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (308)
T cd06615         157 SFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPDAKELEAMFGRPVSEGEAKESHRPVSGHPPDSPRP  236 (308)
T ss_pred             cCCCCcCccChhHhcCCCCCccchHHHHHHHHHHHHhCCCCCCCcchhhHHHhhcCccccccccCCcccccCCCCCccch
Confidence            3456788999999988888999999999999999999999996442111100000000000                   


Q ss_pred             -hhhhhhhhhhc---CCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          211 -FINRELNKLVR---GTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       211 -~~~~~~~~~~~---~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                       ...........   +..........+.+++.+||+.+|++|| +.|+++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~  286 (308)
T cd06615         237 MAIFELLDYIVNEPPPKLPSGAFSDEFQDFVDKCLKKNPKERADLKELTK  286 (308)
T ss_pred             hhHHHHHHHHhcCCCccCcCcccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence             00000000000   0011112345689999999999999999 999976

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=100.00  E-value=3.3e-34  Score=243.92  Aligned_cols=228  Identities=18%  Similarity=0.197  Sum_probs=172.2

Q ss_pred             ccccceeeeccc--------CCCCCeeeccch----------hhhHHHHhHhhhccccccc-cCCceeeeceeeeecCce
Q 044568            4 TKLSNFYRSSFN--------ARNSPWISRVSW----------TADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVS   64 (257)
Q Consensus         4 ~~~~~~y~~~~~--------~~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~   64 (257)
                      +.++.||+++..        +...+++|....          .+|++.+.         .+ .|+|++++.+.+...+..
T Consensus        26 G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~---------~l~~h~~i~~~~~~~~~~~~~   96 (304)
T cd05101          26 GCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMK---------MIGKHKNIINLLGACTQDGPL   96 (304)
T ss_pred             cCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHH---------hhccCCCchheeEEEecCCce
Confidence            568899988642        223456665432          22333322         55 799999999999999999


Q ss_pred             eEEEeecCCCCHHHHHhccC--------------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCC
Q 044568           65 GKIERPVRNGSLTDIIFCSA--------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF  130 (257)
Q Consensus        65 ~lV~E~~~~gsL~~~l~~~~--------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~  130 (257)
                      ++||||+++|+|.+++....              ...+++.++..++.|++.||.|||++   +++|+||||+||+++.+
T Consensus        97 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~---givH~dlkp~Nili~~~  173 (304)
T cd05101          97 YVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQ---KCIHRDLAARNVLVTEN  173 (304)
T ss_pred             EEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHC---CeeecccccceEEEcCC
Confidence            99999999999999997521              23578889999999999999999999   99999999999999999


Q ss_pred             CceEEeeecccccCCCCc-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHH
Q 044568          131 WTAKILDFGLAKLPNEDF-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILT  204 (257)
Q Consensus       131 ~~~kl~dfg~~~~~~~~~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~  204 (257)
                      +.++|+|||.++......     ....++..|+|||.+.+..++.++||||||+++||+++ |..||....  ..     
T Consensus       174 ~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~--~~-----  246 (304)
T cd05101         174 NVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP--VE-----  246 (304)
T ss_pred             CcEEECCCccceecccccccccccCCCCCceeeCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCC--HH-----
Confidence            999999999987543221     22234457999999988889999999999999999998 788886431  11     


Q ss_pred             HHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          205 NWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      .+.... ...      .....+...+..+.+++.+||+.+|.+|| +.|+++.|
T Consensus       247 ~~~~~~-~~~------~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l  293 (304)
T cd05101         247 ELFKLL-KEG------HRMDKPANCTNELYMMMRDCWHAIPSHRPTFKQLVEDL  293 (304)
T ss_pred             HHHHHH-HcC------CcCCCCCCCCHHHHHHHHHHcccChhhCCCHHHHHHHH
Confidence            010000 000      00122334567899999999999999999 99998864

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=3e-34  Score=241.79  Aligned_cols=240  Identities=17%  Similarity=0.223  Sum_probs=173.3

Q ss_pred             ccccceeeeccc-----CCCCCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeec--CceeE
Q 044568            4 TKLSNFYRSSFN-----ARNSPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT--SVSGK   66 (257)
Q Consensus         4 ~~~~~~y~~~~~-----~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~--~~~~l   66 (257)
                      +.++.||.+++.     .+..+++|...          +.+|++.+.         ++.|+|++++.+.+...  ...++
T Consensus        15 g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~---------~l~h~~i~~~~~~~~~~~~~~~~l   85 (284)
T cd05079          15 GHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILR---------NLYHENIVKYKGICTEDGGNGIKL   85 (284)
T ss_pred             CCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHH---------hCCCCCeeeeeeEEecCCCCceEE
Confidence            467889888743     45556777654          233444444         78999999999988765  56789


Q ss_pred             EEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC
Q 044568           67 IERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE  146 (257)
Q Consensus        67 V~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~  146 (257)
                      ||||+++++|.+++.. ....+++.++..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||++.....
T Consensus        86 v~e~~~g~~L~~~l~~-~~~~~~~~~~~~i~~~i~~aL~~lH~~---gi~H~dlkp~Nil~~~~~~~~l~dfg~~~~~~~  161 (284)
T cd05079          86 IMEFLPSGSLKEYLPR-NKNKINLKQQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVKIGDFGLTKAIET  161 (284)
T ss_pred             EEEccCCCCHHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccchheEEEcCCCCEEECCCcccccccc
Confidence            9999999999999965 345689999999999999999999999   999999999999999999999999999875432


Q ss_pred             Cc------ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhh
Q 044568          147 DF------VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLV  220 (257)
Q Consensus       147 ~~------~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (257)
                      ..      ....++..|+|||.+.+..++.++||||||+++||++++..|+.......... ................+.
T Consensus       162 ~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ellt~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  240 (284)
T cd05079         162 DKEYYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCDSESSPMTLFLKM-IGPTHGQMTVTRLVRVLE  240 (284)
T ss_pred             CccceeecCCCCCCccccCHHHhccCCCCccccchhhhhhhhhhhcCCCCCccccchhhhh-cccccccccHHHHHHHHH
Confidence            21      12334556999999988889999999999999999999887654321100000 000000000000000011


Q ss_pred             cC--CCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          221 RG--TKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       221 ~~--~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ..  ...+...+..+.+++.+||+.+|.+|| +.++++.|
T Consensus       241 ~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~l  280 (284)
T cd05079         241 EGKRLPRPPNCPEEVYQLMRKCWEFQPSKRTTFQNLIEGF  280 (284)
T ss_pred             cCccCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHHH
Confidence            11  122334567899999999999999999 99998754

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>PHA03209 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=5.2e-34  Score=248.26  Aligned_cols=174  Identities=19%  Similarity=0.242  Sum_probs=146.2

Q ss_pred             ccccceeeecccCCC-CCeeeccc---hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHH
Q 044568            4 TKLSNFYRSSFNARN-SPWISRVS---WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDI   79 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~-~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~   79 (257)
                      +.++.||+++..... .+++|...   ...|+..+.         ++.|+|++++.+.+...+..++|||++. ++|.++
T Consensus        77 G~~g~Vy~~~~~~~~~~valK~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~  146 (357)
T PHA03209         77 GSEGRVFVATKPGQPDPVVLKIGQKGTTLIEAMLLQ---------NVNHPSVIRMKDTLVSGAITCMVLPHYS-SDLYTY  146 (357)
T ss_pred             CCCeEEEEEEECCCCceEEEEeCCccccHHHHHHHH---------hCCCCCCcChhheEEeCCeeEEEEEccC-CcHHHH
Confidence            578999999976554 45555432   244555555         8889999999999999999999999995 689998


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC--CcccccCCCCc
Q 044568           80 IFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE--DFVIDKRDKGY  157 (257)
Q Consensus        80 l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~--~~~~~~~~~~~  157 (257)
                      +.. ....+++.++..++.|++.||.|||++   +|+||||||+||+++.++.++|+|||.++....  ......+|..|
T Consensus       147 l~~-~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y  222 (357)
T PHA03209        147 LTK-RSRPLPIDQALIIEKQILEGLRYLHAQ---RIIHRDVKTENIFINDVDQVCIGDLGAAQFPVVAPAFLGLAGTVET  222 (357)
T ss_pred             HHh-ccCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEEecCccccccccCcccccccccccc
Confidence            875 556799999999999999999999999   999999999999999999999999999874322  22345678899


Q ss_pred             cCcccccCCCCCccccchhHHHHHHHHHhcCCCC
Q 044568          158 MAPECYKRTPISVKADVYGYGIVLLETICCRKNM  191 (257)
Q Consensus       158 ~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf  191 (257)
                      +|||.+.+..++.++|||||||++|||+++..|+
T Consensus       223 ~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~  256 (357)
T PHA03209        223 NAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTI  256 (357)
T ss_pred             cCCeecCCCCCCchhhHHHHHHHHHHHHHcCCcc
Confidence            9999999888999999999999999999865554

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=100.00  E-value=1.4e-34  Score=237.41  Aligned_cols=237  Identities=17%  Similarity=0.153  Sum_probs=178.5

Q ss_pred             ccccceeeecccCCC-CCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeee--ecCceeEEEe
Q 044568            4 TKLSNFYRSSFNARN-SPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAK--LTSVSGKIER   69 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~-~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~--~~~~~~lV~E   69 (257)
                      +.+++||||+...++ .+++|++..           .+|+..+.         +++|+|||.+--+..  +-+..|||||
T Consensus        87 GtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl---------~~~H~NIV~vkEVVvG~~~d~iy~VMe  157 (419)
T KOG0663|consen   87 GTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILL---------KARHPNIVEVKEVVVGSNMDKIYIVME  157 (419)
T ss_pred             CcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHH---------hcCCCCeeeeEEEEeccccceeeeeHH
Confidence            467899999966554 557887663           34555555         889999998877665  4568999999


Q ss_pred             ecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC--
Q 044568           70 PVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED--  147 (257)
Q Consensus        70 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~--  147 (257)
                      ||++ +|...+.. -...+...+++.++.|++.|++|||.+   .|+|||||++|+|+...|.+|++|||+++..+.+  
T Consensus       158 ~~Eh-DLksl~d~-m~q~F~~~evK~L~~QlL~glk~lH~~---wilHRDLK~SNLLm~~~G~lKiaDFGLAR~ygsp~k  232 (419)
T KOG0663|consen  158 YVEH-DLKSLMET-MKQPFLPGEVKTLMLQLLRGLKHLHDN---WILHRDLKTSNLLLSHKGILKIADFGLAREYGSPLK  232 (419)
T ss_pred             HHHh-hHHHHHHh-ccCCCchHHHHHHHHHHHHHHHHHhhc---eeEecccchhheeeccCCcEEecccchhhhhcCCcc
Confidence            9987 99999985 446899999999999999999999999   9999999999999999999999999999987665  


Q ss_pred             -cccccCCCCccCcccccCCC-CCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHH-------HHHhhhhhhhh-
Q 044568          148 -FVIDKRDKGYMAPECYKRTP-ISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNW-------VYKCFINRELN-  217 (257)
Q Consensus       148 -~~~~~~~~~~~aPE~~~~~~-~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~-------~~~~~~~~~~~-  217 (257)
                       .+...-|.=|.|||.+.+.. |+...|+||+||++.|++++++.|.+..+.+.-..+-..       .++.+..-... 
T Consensus       233 ~~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G~sE~dQl~~If~llGtPte~iwpg~~~lp~~k  312 (419)
T KOG0663|consen  233 PYTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFPGKSEIDQLDKIFKLLGTPSEAIWPGYSELPAVK  312 (419)
T ss_pred             cCcceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCccccCCCccccchhh
Confidence             35555566799999999764 899999999999999999999999877443321111110       01111110000 


Q ss_pred             ---------hhhcCCCCCHH-HHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          218 ---------KLVRGTKVDKK-NLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       218 ---------~~~~~~~~~~~-~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                               ..+.. .+... ..+.-.+|+...+.+||++|- +.|.++
T Consensus       313 ~~~f~~~pyn~lr~-kF~~~~lse~g~~Lln~llt~dP~kR~tA~~~L~  360 (419)
T KOG0663|consen  313 KMTFSEHPYNNLRK-KFGALSLSEQGFDLLNKLLTYDPGKRITAEDGLK  360 (419)
T ss_pred             ccccCCCCchhhhh-hccccccchhHHHHHHHHhccCccccccHHHhhc
Confidence                     00000 01111 336778899999999999999 988764

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=100.00  E-value=3.1e-34  Score=241.46  Aligned_cols=240  Identities=17%  Similarity=0.136  Sum_probs=174.0

Q ss_pred             cccccceeeeccc-CCCCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            3 CTKLSNFYRSSFN-ARNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         3 ~~~~~~~y~~~~~-~~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      .+.++.||+++.. ++..+++|....           .+|++.+.         ++.|+|++++.+.+...+..++||||
T Consensus        10 ~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~---------~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (285)
T cd07861          10 EGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLK---------ELQHPNIVCLQDVLMQESRLYLIFEF   80 (285)
T ss_pred             ccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHH---------hcCCCCEeeeEEEEeeCCeEEEEEec
Confidence            3578899999975 455667775432           23333333         77899999999999999999999999


Q ss_pred             cCCCCHHHHHhccC-CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-
Q 044568           71 VRNGSLTDIIFCSA-ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-  148 (257)
Q Consensus        71 ~~~gsL~~~l~~~~-~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-  148 (257)
                      ++ ++|.+++.... ...+++.++..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||++....... 
T Consensus        81 ~~-~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~  156 (285)
T cd07861          81 LS-MDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSR---RVLHRDLKPQNLLIDNKGVIKLADFGLARAFGIPVR  156 (285)
T ss_pred             CC-CCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCCHHHEEEcCCCcEEECcccceeecCCCcc
Confidence            97 68999886422 36689999999999999999999999   99999999999999999999999999886443221 


Q ss_pred             --ccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHH-------HHhh-hhhhhh
Q 044568          149 --VIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWV-------YKCF-INRELN  217 (257)
Q Consensus       149 --~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~-------~~~~-~~~~~~  217 (257)
                        ....++..|+|||.+.+. .++.++|+||||+++|++++|+.||................       ++.. ......
T Consensus       157 ~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (285)
T cd07861         157 VYTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHGDSEIDQLFRIFRILGTPTEDVWPGVTSLPDYK  236 (285)
T ss_pred             cccCCcccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhcchhhHHHH
Confidence              233557789999988654 47889999999999999999999997553221111000000       0000 000000


Q ss_pred             hhhcCC------CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          218 KLVRGT------KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       218 ~~~~~~------~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ...+..      .......+++.+++.+||+.||.+|| +.++++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~~ll~  281 (285)
T cd07861         237 NTFPKWKKGSLRSAVKNLDEDGLDLLEKMLIYDPAKRISAKKALN  281 (285)
T ss_pred             hhccccCcchhHHhcCCCCHHHHHHHHHHhcCChhhCCCHHHHhc
Confidence            000000      00112346778999999999999999 999975

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=100.00  E-value=3.9e-34  Score=241.71  Aligned_cols=235  Identities=18%  Similarity=0.254  Sum_probs=171.3

Q ss_pred             ccccceeeecccC------CCCCeeeccchhhhHH-HHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCH
Q 044568            4 TKLSNFYRSSFNA------RNSPWISRVSWTADIE-VLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSL   76 (257)
Q Consensus         4 ~~~~~~y~~~~~~------~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL   76 (257)
                      +.++.||+|...+      ...+++|........+ ..........+.++.|+|++++.+.+...+..++||||+++|+|
T Consensus        17 G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L   96 (288)
T cd05061          17 GSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDL   96 (288)
T ss_pred             CCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEeCCCCCCH
Confidence            5688999986542      2245666543111000 00000111133488899999999999999999999999999999


Q ss_pred             HHHHhccC--------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc
Q 044568           77 TDIIFCSA--------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF  148 (257)
Q Consensus        77 ~~~l~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~  148 (257)
                      .+++....        ...+++..+..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||+++......
T Consensus        97 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dikp~nili~~~~~~~L~Dfg~~~~~~~~~  173 (288)
T cd05061          97 KSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETD  173 (288)
T ss_pred             HHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CCcCCCCChheEEEcCCCcEEECcCCccccccccc
Confidence            99997421        13346678889999999999999999   99999999999999999999999999887432221


Q ss_pred             -----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcC
Q 044568          149 -----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRG  222 (257)
Q Consensus       149 -----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (257)
                           ....++..|+|||.+.+..++.++|+||||+++||+++ |..||.......   .. .            .....
T Consensus       174 ~~~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~~~~~~---~~-~------------~~~~~  237 (288)
T cd05061         174 YYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQ---VL-K------------FVMDG  237 (288)
T ss_pred             cccccCCCcccccccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCCCCHHH---HH-H------------HHHcC
Confidence                 11233456999999988889999999999999999999 788886431110   00 0            01111


Q ss_pred             C--CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          223 T--KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       223 ~--~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      .  ..+...++.+.+++.+||+.+|++|| +.++++.|
T Consensus       238 ~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l  275 (288)
T cd05061         238 GYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLL  275 (288)
T ss_pred             CCCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence            0  12334457899999999999999999 99998753

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=100.00  E-value=5.9e-34  Score=240.95  Aligned_cols=234  Identities=17%  Similarity=0.125  Sum_probs=172.7

Q ss_pred             ccccceeeecccC-CCCCeeeccch--hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHHH
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW--TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDII   80 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l   80 (257)
                      +.++.||+++... +..+++|...-  ....+.+..  .-..+..+.|+|++++.+.+...+..++||||+++++|..++
T Consensus        23 g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~--e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~  100 (292)
T cd06644          23 GAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMV--EIEILATCNHPYIVKLLGAFYWDGKLWIMIEFCPGGAVDAIM  100 (292)
T ss_pred             CCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHH--HHHHHHhCCCCcEeeeEEEEEeCCeEEEEEecCCCCcHHHHH
Confidence            4678999999766 45555555431  111111110  001233788999999999999999999999999999999988


Q ss_pred             hccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---cccccCCCCc
Q 044568           81 FCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---FVIDKRDKGY  157 (257)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~~~~~~~~~~  157 (257)
                      .. ....+++..+..++.|++.|+.|||++   +++|+|++|+||+++.++.++|+|||.+......   .....++..|
T Consensus       101 ~~-~~~~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y  176 (292)
T cd06644         101 LE-LDRGLTEPQIQVICRQMLEALQYLHSM---KIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTLQRRDSFIGTPYW  176 (292)
T ss_pred             Hh-hcCCCCHHHHHHHHHHHHHHHHHHhcC---CeeecCCCcceEEEcCCCCEEEccCccceeccccccccceecCCccc
Confidence            65 456789999999999999999999999   9999999999999999999999999987643221   2334567789


Q ss_pred             cCccccc-----CCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHH
Q 044568          158 MAPECYK-----RTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLEN  232 (257)
Q Consensus       158 ~aPE~~~-----~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (257)
                      +|||.+.     ...++.++|+||||+++|||++|..||.......   .....     ...    .......+......
T Consensus       177 ~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~---~~~~~-----~~~----~~~~~~~~~~~~~~  244 (292)
T cd06644         177 MAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMR---VLLKI-----AKS----EPPTLSQPSKWSME  244 (292)
T ss_pred             cCceeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCccccHHH---HHHHH-----hcC----CCccCCCCcccCHH
Confidence            9999985     3446789999999999999999999996542111   00000     000    00011122334467


Q ss_pred             HHHHHHHcccCCCCCCC-hHHHHH
Q 044568          233 LVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       233 l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +.+++.+||+.+|++|| +.|+++
T Consensus       245 ~~~li~~~l~~~p~~Rp~~~~il~  268 (292)
T cd06644         245 FRDFLKTALDKHPETRPSAAQLLE  268 (292)
T ss_pred             HHHHHHHHhcCCcccCcCHHHHhc
Confidence            88999999999999999 999975

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=4.1e-34  Score=240.32  Aligned_cols=228  Identities=17%  Similarity=0.144  Sum_probs=179.8

Q ss_pred             cccccceeeecccCCCC-Ceeeccch---hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHH
Q 044568            3 CTKLSNFYRSSFNARNS-PWISRVSW---TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTD   78 (257)
Q Consensus         3 ~~~~~~~y~~~~~~~~~-~~i~~~~~---~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~   78 (257)
                      |+..+.||...+...+. .++|.++-   ...-+...++-....+..+.||.+..++..+..+...|||||||+||+|..
T Consensus        87 ~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~cl~meyCpGGdL~~  166 (459)
T KOG0610|consen   87 CGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETDKYSCLVMEYCPGGDLHS  166 (459)
T ss_pred             CCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeeccceeEEEEecCCCccHHH
Confidence            67889999999888754 35554442   222223333444445558999999999999999999999999999999999


Q ss_pred             HHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC------------
Q 044568           79 IIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE------------  146 (257)
Q Consensus        79 ~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~------------  146 (257)
                      ..++..++.+++..++.++..++-||+|||-.   ||++|||||+|||+.++|++-|+||.++.....            
T Consensus       167 LrqkQp~~~fse~~aRFYaAEvl~ALEYLHml---GivYRDLKPENILvredGHIMLsDFDLS~~~~~~Pt~~~s~~~~~  243 (459)
T KOG0610|consen  167 LRQKQPGKRFSESAARFYAAEVLLALEYLHML---GIVYRDLKPENILVREDGHIMLSDFDLSLRCPVSPTLVKSSSPRS  243 (459)
T ss_pred             HHhhCCCCccchhhHHHHHHHHHHHHHHHHhh---ceeeccCCcceeEEecCCcEEeeeccccccCCCCCeeeccCCCCC
Confidence            99987888999999999999999999999999   999999999999999999999999987532100            


Q ss_pred             -----------------C------------------------------cccccCCCCccCcccccCCCCCccccchhHHH
Q 044568          147 -----------------D------------------------------FVIDKRDKGYMAPECYKRTPISVKADVYGYGI  179 (257)
Q Consensus       147 -----------------~------------------------------~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~  179 (257)
                                       .                              ..+..||-.|+|||++.+...+.++|+|+||+
T Consensus       244 ~~~~~~~~~~~~s~f~~r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~G~GHgsAVDWWtfGI  323 (459)
T KOG0610|consen  244 SGSQPSCRSRQPSCFSPRCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIRGEGHGSAVDWWTFGI  323 (459)
T ss_pred             CCCCcccccccccccccchhccccccccccccccccchhhhcCCCCccccccccccccccceeeecCCCCchhhHHHHHH
Confidence                             0                              01224555699999999999999999999999


Q ss_pred             HHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC-CC--CHHHHHHHHHHHHHcccCCCCCCC
Q 044568          180 VLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT-KV--DKKNLENLVKVGLWCVQDEPALRP  249 (257)
Q Consensus       180 ~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~l~~l~~~cl~~~p~~RP  249 (257)
                      ++|||+.|.+||.+......                +.+.+... .+  .......+.+||.+.|.+||.+|.
T Consensus       324 flYEmLyG~TPFKG~~~~~T----------------l~NIv~~~l~Fp~~~~vs~~akDLIr~LLvKdP~kRl  380 (459)
T KOG0610|consen  324 FLYEMLYGTTPFKGSNNKET----------------LRNIVGQPLKFPEEPEVSSAAKDLIRKLLVKDPSKRL  380 (459)
T ss_pred             HHHHHHhCCCCcCCCCchhh----------------HHHHhcCCCcCCCCCcchhHHHHHHHHHhccChhhhh
Confidence            99999999999997743321                11222211 11  124457789999999999999997

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=100.00  E-value=4.1e-34  Score=243.74  Aligned_cols=196  Identities=23%  Similarity=0.246  Sum_probs=155.4

Q ss_pred             cc-cCCceeeeceeeeecCceeEEEeecCCCCHHHHHhccC--------------CCCCCHHHHHHHHHHHHHHHHHHhh
Q 044568           45 RI-RGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSA--------------ERNPYWNQRVRIALDVAKGILYLHD  109 (257)
Q Consensus        45 ~~-~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~--------------~~~l~~~~~~~~~~~i~~~l~~lh~  109 (257)
                      ++ +|+|++++.+.+...+..++||||+++|+|.+++....              ...+++.++..++.|++.||.|||+
T Consensus        79 ~l~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~  158 (307)
T cd05098          79 MIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLAS  158 (307)
T ss_pred             HhcCCCCEeeEEEEEecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHH
Confidence            55 69999999999999999999999999999999997532              1358899999999999999999999


Q ss_pred             CCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHH
Q 044568          110 ECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLET  184 (257)
Q Consensus       110 ~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el  184 (257)
                      +   +++|+||+|+||+++.++.++|+|||.+.......     ....++..|+|||.+.+..++.++|+||||+++|||
T Consensus       159 ~---gi~H~dlkp~Nill~~~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el  235 (307)
T cd05098         159 K---KCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEI  235 (307)
T ss_pred             C---CcccccccHHheEEcCCCcEEECCCcccccccccchhhccccCCCccceeChHHhccCCCCcHHHHHHHHHHHHHH
Confidence            9   99999999999999999999999999886443211     111233579999999888899999999999999999


Q ss_pred             Hh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          185 IC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       185 ~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ++ |..||.....  ..     ....      .... .....+......+.+++.+||+.+|.+|| +.|+++.|
T Consensus       236 ~~~g~~p~~~~~~--~~-----~~~~------~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~~l  296 (307)
T cd05098         236 FTLGGSPYPGVPV--EE-----LFKL------LKEG-HRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDL  296 (307)
T ss_pred             HcCCCCCCCcCCH--HH-----HHHH------HHcC-CCCCCCCcCCHHHHHHHHHHcccChhhCcCHHHHHHHH
Confidence            98 8888864311  10     0000      0000 01122334567888999999999999999 99998764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=100.00  E-value=6e-34  Score=243.55  Aligned_cols=196  Identities=21%  Similarity=0.248  Sum_probs=155.1

Q ss_pred             cc-cCCceeeeceeeeecCceeEEEeecCCCCHHHHHhccC--------------CCCCCHHHHHHHHHHHHHHHHHHhh
Q 044568           45 RI-RGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSA--------------ERNPYWNQRVRIALDVAKGILYLHD  109 (257)
Q Consensus        45 ~~-~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~--------------~~~l~~~~~~~~~~~i~~~l~~lh~  109 (257)
                      ++ .|+|++++.+.+...+..++||||+++|+|.+++....              ...+++.++..++.|++.||.|||+
T Consensus        73 ~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~  152 (314)
T cd05099          73 LIGKHKNIINLLGVCTQEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLES  152 (314)
T ss_pred             hccCCCCeeeEEEEEccCCceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHH
Confidence            55 59999999999998899999999999999999996422              2458899999999999999999999


Q ss_pred             CCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHH
Q 044568          110 ECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLET  184 (257)
Q Consensus       110 ~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el  184 (257)
                      +   +++|+||+|+||+++.++.+||+|||.++......     ....++..|+|||.+.+..++.++|+||||+++||+
T Consensus       153 ~---gi~H~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~el  229 (314)
T cd05099         153 R---RCIHRDLAARNVLVTEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEI  229 (314)
T ss_pred             C---CeeeccccceeEEEcCCCcEEEccccccccccccccccccccCCCCccccCHHHHccCCcCccchhhHHHHHHHHH
Confidence            9   99999999999999999999999999987543211     111233469999999888899999999999999999


Q ss_pred             Hh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          185 IC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       185 ~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ++ |..||.......   ....     ....      .....+...+..+.+++.+||+.+|++|| +.|+++.|
T Consensus       230 ~~~g~~p~~~~~~~~---~~~~-----~~~~------~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~ll~~l  290 (314)
T cd05099         230 FTLGGSPYPGIPVEE---LFKL-----LREG------HRMDKPSNCTHELYMLMRECWHAVPTQRPTFKQLVEAL  290 (314)
T ss_pred             HhCCCCCCCCCCHHH---HHHH-----HHcC------CCCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHH
Confidence            99 888986441110   0000     0000      00122334556788999999999999999 99998764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=100.00  E-value=1.1e-33  Score=234.48  Aligned_cols=226  Identities=18%  Similarity=0.188  Sum_probs=175.7

Q ss_pred             cccceeeecccC-CCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            5 KLSNFYRSSFNA-RNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         5 ~~~~~y~~~~~~-~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      .++.+|.++... +..+++|...           +.+|++.+.         ++.|+|++++.+.+...+..++||||++
T Consensus        12 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~---------~~~h~~i~~~~~~~~~~~~~~~~~e~~~   82 (256)
T cd08221          12 AFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILS---------LLQHPNIIAYYNHFMDDNTLLIEMEYAN   82 (256)
T ss_pred             CCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHH---------hCCCCCeeEEEeEEecCCeEEEEEEecC
Confidence            466677777444 4555566533           223444444         7889999999999999999999999999


Q ss_pred             CCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc---c
Q 044568           73 NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF---V  149 (257)
Q Consensus        73 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~---~  149 (257)
                      +|+|.+++.......+++.++..++.|++.|+.|||+.   +++|+|++|+||+++.++.+|++|||.+.......   .
T Consensus        83 ~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~~~~~~  159 (256)
T cd08221          83 GGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKA---GILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYSMAE  159 (256)
T ss_pred             CCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhC---CccccCCChHhEEEeCCCCEEECcCcceEEccccccccc
Confidence            99999999754456789999999999999999999999   99999999999999999999999999887543322   3


Q ss_pred             cccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHH
Q 044568          150 IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKN  229 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (257)
                      ...+++.|.|||.+.+..++.++|+||||+++|||++|..||.......   ......     ...      ....+...
T Consensus       160 ~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~~---~~~~~~-----~~~------~~~~~~~~  225 (256)
T cd08221         160 TVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDATNPLN---LVVKIV-----QGN------YTPVVSVY  225 (256)
T ss_pred             ccCCCccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCCCCHHH---HHHHHH-----cCC------CCCCcccc
Confidence            4467888999999988888899999999999999999999997542111   000000     000      01122334


Q ss_pred             HHHHHHHHHHcccCCCCCCC-hHHHHHh
Q 044568          230 LENLVKVGLWCVQDEPALRP-MKCAVMM  256 (257)
Q Consensus       230 ~~~l~~l~~~cl~~~p~~RP-~~ei~~~  256 (257)
                      ...+.+++.+||+.+|.+|| +.|+++.
T Consensus       226 ~~~~~~~i~~~l~~~p~~R~s~~~ll~~  253 (256)
T cd08221         226 SSELISLVHSLLQQDPEKRPTADEVLDQ  253 (256)
T ss_pred             CHHHHHHHHHHcccCcccCCCHHHHhhC
Confidence            56788999999999999999 9999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-35  Score=232.69  Aligned_cols=241  Identities=18%  Similarity=0.191  Sum_probs=179.7

Q ss_pred             ccccceeeec-ccCCCCCeeeccchhhhHHHHhHhhhccccccccCCceeeeceeeee-----cCceeEEEeecCCCCHH
Q 044568            4 TKLSNFYRSS-FNARNSPWISRVSWTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL-----TSVSGKIERPVRNGSLT   77 (257)
Q Consensus         4 ~~~~~~y~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~-----~~~~~lV~E~~~~gsL~   77 (257)
                      ++||.||.++ +-+++..++|++-+.+.-+.-.....-..+.++.|+|++++....-.     ....||+++|...|||.
T Consensus        32 GGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~~~yll~Pyy~~Gsl~  111 (302)
T KOG2345|consen   32 GGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKHEAYLLLPYYKRGSLL  111 (302)
T ss_pred             CCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCceeEEEEeehhccccHH
Confidence            5788999999 77788889998876442221112222225669999999988776543     34589999999999999


Q ss_pred             HHHhcc--CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC--------
Q 044568           78 DIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED--------  147 (257)
Q Consensus        78 ~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~--------  147 (257)
                      +.+..-  ++..+++.+.+.|+.+++.||++||+. .++..||||||.|||+.+++.+++.|||.+......        
T Consensus       112 d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~-~~~yAH~DiKP~NILls~~~~~vl~D~GS~~~a~i~i~~~~~a~  190 (302)
T KOG2345|consen  112 DEIERLKIKGNFVSEAQILWIFLGICRGLEALHEK-EPPYAHRDIKPANILLSDSGLPVLMDLGSATQAPIQIEGSRQAL  190 (302)
T ss_pred             HHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhcc-CCcccccCCCcceeEecCCCceEEEeccCccccceEeechHHHH
Confidence            999743  445689999999999999999999998 445999999999999999999999999987642211        


Q ss_pred             ----cccccCCCCccCcccccC---CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhh
Q 044568          148 ----FVIDKRDKGYMAPECYKR---TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLV  220 (257)
Q Consensus       148 ----~~~~~~~~~~~aPE~~~~---~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (257)
                          .....+|..|.|||.+.-   ...++++|||||||++|+|+.|..||+...+......+..      .++++   .
T Consensus       191 ~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~~GgSlaLAv------~n~q~---s  261 (302)
T KOG2345|consen  191 RLQEWAEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQQGGSLALAV------QNAQI---S  261 (302)
T ss_pred             HHHHHHHHhCCCcccCchheecccCcccccccchhhhhHHHHHHHHcCCcchHHhhcCCeEEEee------ecccc---c
Confidence                134467888999999863   3568999999999999999999999975432221111100      00000   0


Q ss_pred             cCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHh
Q 044568          221 RGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMM  256 (257)
Q Consensus       221 ~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~  256 (257)
                      -  +.....++.+.+++.+|++.||.+|| +.|++..
T Consensus       262 ~--P~~~~yse~l~~lik~mlqvdP~qRP~i~~ll~~  296 (302)
T KOG2345|consen  262 I--PNSSRYSEALHQLIKSMLQVDPNQRPTIPELLSK  296 (302)
T ss_pred             c--CCCCCccHHHHHHHHHHhcCCcccCCCHHHHHHH
Confidence            0  11222568899999999999999999 9999764

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=100.00  E-value=7.2e-34  Score=239.01  Aligned_cols=228  Identities=20%  Similarity=0.226  Sum_probs=172.2

Q ss_pred             ccccceeeecc-cCCCCCeeeccch----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSF-NARNSPWISRVSW----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~-~~~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +.++.||++.. .++..+++|....          .+|++.+.         ++.|+|++++.+.+...+..++||||++
T Consensus        12 g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~~~~~~~lv~e~~~   82 (279)
T cd06619          12 GNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILY---------KCDSPYIIGFYGAFFVENRISICTEFMD   82 (279)
T ss_pred             CCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHH---------hCCCCCeeeEEEEEEECCEEEEEEecCC
Confidence            56889999985 4555566765432          23333333         7889999999999999999999999999


Q ss_pred             CCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC-Ccccc
Q 044568           73 NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE-DFVID  151 (257)
Q Consensus        73 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~-~~~~~  151 (257)
                      +++|..+.      .+++..+..++.|++.|+.|||+.   +++|+||+|+||+++.++.++|+|||++..... .....
T Consensus        83 ~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~~~~~~~  153 (279)
T cd06619          83 GGSLDVYR------KIPEHVLGRIAVAVVKGLTYLWSL---KILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNSIAKTY  153 (279)
T ss_pred             CCChHHhh------cCCHHHHHHHHHHHHHHHHHHHHC---CEeeCCCCHHHEEECCCCCEEEeeCCcceecccccccCC
Confidence            99997653      368888899999999999999999   999999999999999999999999998875432 22345


Q ss_pred             cCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHH
Q 044568          152 KRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLE  231 (257)
Q Consensus       152 ~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (257)
                      .++..|+|||.+.+..++.++|+||||+++|+|++|+.||..............+.. ...     ....+........+
T Consensus       154 ~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~  227 (279)
T cd06619         154 VGTNAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSLMPLQLLQ-CIV-----DEDPPVLPVGQFSE  227 (279)
T ss_pred             CCChhhcCceeecCCCCCCcchHHHHHHHHHHHHhCCCCchhhcccccccchHHHHH-HHh-----ccCCCCCCCCcCCH
Confidence            678889999999988899999999999999999999999975322111110000000 000     00011111222346


Q ss_pred             HHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          232 NLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       232 ~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .+.+++.+||+.+|++|| ++|+++
T Consensus       228 ~~~~li~~~l~~~P~~Rp~~~eil~  252 (279)
T cd06619         228 KFVHFITQCMRKQPKERPAPENLMD  252 (279)
T ss_pred             HHHHHHHHHhhCChhhCCCHHHHhc
Confidence            788999999999999999 999875

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=100.00  E-value=6.4e-34  Score=240.24  Aligned_cols=223  Identities=19%  Similarity=0.223  Sum_probs=172.0

Q ss_pred             ccccceeeecccC-CCCCeeeccch------------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||++.... +..+++|...-            .+|++         .+.++.|++++.+.+.+...+..++||||
T Consensus        11 G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~---------il~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05630          11 GGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQ---------ILEKVNSRFVVSLAYAYETKDALCLVLTL   81 (285)
T ss_pred             CCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHH---------HHHhCCCCCeeeeeEEEecCCEEEEEEEe
Confidence            4678899988664 45566665431            12222         33378899999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC--c
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED--F  148 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~--~  148 (257)
                      +++++|.+++.......+++.++..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||++......  .
T Consensus        82 ~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~  158 (285)
T cd05630          82 MNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQE---RIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTI  158 (285)
T ss_pred             cCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHEEECCCCCEEEeeccceeecCCCccc
Confidence            9999999999754555799999999999999999999999   9999999999999999999999999988653322  1


Q ss_pred             ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHH
Q 044568          149 VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKK  228 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (257)
                      ....++..|+|||.+.+..++.++|+||+|+++|+|++|..||................      .....     ..+..
T Consensus       159 ~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~~~~~~~~~~~~~------~~~~~-----~~~~~  227 (285)
T cd05630         159 KGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLV------KEVQE-----EYSEK  227 (285)
T ss_pred             cCCCCCccccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCccchHHHHHhhh------hhhhh-----hcCcc
Confidence            33467889999999998889999999999999999999999997542221111111100      00000     12233


Q ss_pred             HHHHHHHHHHHcccCCCCCCC
Q 044568          229 NLENLVKVGLWCVQDEPALRP  249 (257)
Q Consensus       229 ~~~~l~~l~~~cl~~~p~~RP  249 (257)
                      ....+.+++..||+.||++||
T Consensus       228 ~~~~~~~li~~~l~~~p~~R~  248 (285)
T cd05630         228 FSPDARSLCKMLLCKDPKERL  248 (285)
T ss_pred             CCHHHHHHHHHHhhcCHHHcc
Confidence            446688999999999999999

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=100.00  E-value=3.1e-34  Score=246.44  Aligned_cols=224  Identities=17%  Similarity=0.176  Sum_probs=168.8

Q ss_pred             ccccceeeeccc-CCCCCeeeccchh-----hhHHHHhHhhhccccccc-cCCceeeeceeeeecCceeEEEeecCCCCH
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSWT-----ADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVSGKIERPVRNGSL   76 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL   76 (257)
                      +.++.||+++.. ++..+++|...-.     ...+...  .....+... .|++++++...+...+..++||||+++|+|
T Consensus        11 G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~--~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~Ey~~~g~L   88 (323)
T cd05615          11 GSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTM--VEKRVLALQDKPPFLTQLHSCFQTVDRLYFVMEYVNGGDL   88 (323)
T ss_pred             cCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHH--HHHHHHHhccCCCchhheeeEEecCCEEEEEEcCCCCCcH
Confidence            578999999865 4556777765421     1111110  000011133 356677888888888999999999999999


Q ss_pred             HHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC---CcccccC
Q 044568           77 TDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE---DFVIDKR  153 (257)
Q Consensus        77 ~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~---~~~~~~~  153 (257)
                      .+++.  ....+++.++..++.|++.||.|||++   +++||||||+||+++.++.++|+|||++.....   ......+
T Consensus        89 ~~~i~--~~~~l~~~~~~~i~~qi~~al~~lH~~---~ivHrDikp~Nill~~~~~ikL~Dfg~~~~~~~~~~~~~~~~g  163 (323)
T cd05615          89 MYHIQ--QVGKFKEPQAVFYAAEISVGLFFLHRR---GIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVDGVTTRTFCG  163 (323)
T ss_pred             HHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEEeccccccccCCCCccccCccC
Confidence            99997  446799999999999999999999999   999999999999999999999999998864321   1233457


Q ss_pred             CCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc-CCCCCHHHHHH
Q 044568          154 DKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR-GTKVDKKNLEN  232 (257)
Q Consensus       154 ~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  232 (257)
                      |+.|+|||.+.+..++.++|+||+|+++|||++|..||......   ....             .... ....+......
T Consensus       164 t~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~---~~~~-------------~i~~~~~~~p~~~~~~  227 (323)
T cd05615         164 TPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDED---ELFQ-------------SIMEHNVSYPKSLSKE  227 (323)
T ss_pred             CccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCCCHH---HHHH-------------HHHhCCCCCCccCCHH
Confidence            88999999999888999999999999999999999999754211   1111             1111 11233445567


Q ss_pred             HHHHHHHcccCCCCCCC-h
Q 044568          233 LVKVGLWCVQDEPALRP-M  250 (257)
Q Consensus       233 l~~l~~~cl~~~p~~RP-~  250 (257)
                      +.+++.+||+.+|.+|+ .
T Consensus       228 ~~~li~~~l~~~p~~R~~~  246 (323)
T cd05615         228 AVSICKGLMTKHPSKRLGC  246 (323)
T ss_pred             HHHHHHHHcccCHhhCCCC
Confidence            88999999999999999 5

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=100.00  E-value=3.8e-34  Score=244.84  Aligned_cols=178  Identities=19%  Similarity=0.200  Sum_probs=142.9

Q ss_pred             ccccceeeeccc---CCCCCeeeccc-------hhhhHHHHhHhhhccccccccCCceeeeceeeee--cCceeEEEeec
Q 044568            4 TKLSNFYRSSFN---ARNSPWISRVS-------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL--TSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~---~~~~~~i~~~~-------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~--~~~~~lV~E~~   71 (257)
                      +.++.||+++..   ++..+++|...       ..+|++.+.         ++.|+|++++...+..  ....++||||+
T Consensus        12 G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~E~~~l~---------~l~h~niv~~~~~~~~~~~~~~~lv~e~~   82 (317)
T cd07868          12 GTYGHVYKAKRKDGKDDRDYALKQIEGTGISMSACREIALLR---------ELKHPNVISLQKVFLSHADRKVWLLFDYA   82 (317)
T ss_pred             CCCeEEEEEEEccCCCCceEEEEEECCCCCcHHHHHHHHHHH---------hcCCCCCcceeeeEecCCCcEEEEEEecc
Confidence            578999999865   34556777543       345555555         8899999999888754  45688999999


Q ss_pred             CCCCHHHHHhcc-------CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceee----CCCCceEEeeecc
Q 044568           72 RNGSLTDIIFCS-------AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM----DEFWTAKILDFGL  140 (257)
Q Consensus        72 ~~gsL~~~l~~~-------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~----~~~~~~kl~dfg~  140 (257)
                      . ++|.+++...       ....+++..+..++.|++.||.|||++   +++||||||+||++    +..+.+||+|||+
T Consensus        83 ~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~  158 (317)
T cd07868          83 E-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGRVKIADMGF  158 (317)
T ss_pred             C-CCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhC---CEEcCCCCHHHEEEecCCCCcCcEEEeecCc
Confidence            6 5888887532       123588999999999999999999999   99999999999999    4567899999999


Q ss_pred             cccCCCCc------ccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcC
Q 044568          141 AKLPNEDF------VIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEID  194 (257)
Q Consensus       141 ~~~~~~~~------~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~  194 (257)
                      ++......      ....+|+.|+|||.+.+. .++.++|+||+||++|||++|+.||...
T Consensus       159 a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~  219 (317)
T cd07868         159 ARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCR  219 (317)
T ss_pred             eeccCCCCccccccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCccCC
Confidence            87543221      234668889999998764 5789999999999999999999999754

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=100.00  E-value=5.5e-34  Score=240.61  Aligned_cols=228  Identities=17%  Similarity=0.218  Sum_probs=173.2

Q ss_pred             ccccceeeeccc------CCCCCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEE
Q 044568            4 TKLSNFYRSSFN------ARNSPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~~------~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV   67 (257)
                      +.++.||+++..      +...+++|...          +.+|++.+.         ++.|+|++++.+.+..++..++|
T Consensus        16 g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~---------~l~h~~iv~~~~~~~~~~~~~lv   86 (288)
T cd05050          16 GAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMA---------EFDHPNIVKLLGVCAVGKPMCLL   86 (288)
T ss_pred             cccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHH---------hcCCCchheEEEEEcCCCccEEE
Confidence            457889998753      34555666533          233444444         78899999999999999999999


Q ss_pred             EeecCCCCHHHHHhccC--------------------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceee
Q 044568           68 ERPVRNGSLTDIIFCSA--------------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM  127 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~--------------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~  127 (257)
                      |||+++|+|.+++....                    ...+++.++..++.|++.||.|||++   +++|+||+|+||++
T Consensus        87 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~---~i~H~dl~p~nil~  163 (288)
T cd05050          87 FEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSER---KFVHRDLATRNCLV  163 (288)
T ss_pred             EecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC---CeecccccHhheEe
Confidence            99999999999997421                    13478888999999999999999999   99999999999999


Q ss_pred             CCCCceEEeeecccccCCCCc-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhH
Q 044568          128 DEFWTAKILDFGLAKLPNEDF-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEI  201 (257)
Q Consensus       128 ~~~~~~kl~dfg~~~~~~~~~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~  201 (257)
                      +.++.++++|||.+.......     .....+..|+|||.+.+..++.++|+||||+++|||++ |..||.......   
T Consensus       164 ~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~~~~~~~---  240 (288)
T cd05050         164 GENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYGMAHEE---  240 (288)
T ss_pred             cCCCceEECccccceecccCccccccCCCccChhhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHH---
Confidence            999999999999876432211     12233456999999988889999999999999999997 888886431110   


Q ss_pred             HHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          202 ILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ...     ......   ..   ..+...+..+.+++.+||+.+|++|| +.|+++.|
T Consensus       241 ~~~-----~~~~~~---~~---~~~~~~~~~l~~li~~~l~~~p~~Rpt~~el~~~l  286 (288)
T cd05050         241 VIY-----YVRDGN---VL---SCPDNCPLELYNLMRLCWSKLPSDRPSFASINRIL  286 (288)
T ss_pred             HHH-----HHhcCC---CC---CCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHh
Confidence            000     000000   00   12334557899999999999999999 99999865

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=100.00  E-value=3.6e-34  Score=241.03  Aligned_cols=238  Identities=15%  Similarity=0.123  Sum_probs=175.1

Q ss_pred             ccccceeeecccC-CCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      +.++.||+++... +..+++|...           +.+|++.+.         ++.|+|++++.+.+...+..++||||+
T Consensus        12 g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~---------~~~h~~i~~~~~~~~~~~~~~~v~e~~   82 (286)
T cd07847          12 GSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLK---------QLKHPNLVNLIEVFRRKRKLHLVFEYC   82 (286)
T ss_pred             cCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHH---------hCCCCCEeeeeeEEeeCCEEEEEEecc
Confidence            4578999998764 5566666432           234444444         888999999999999999999999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc---
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF---  148 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~---  148 (257)
                      ++++|..++.  ....+++.++..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||++.......   
T Consensus        83 ~~~~l~~~~~--~~~~~~~~~~~~~~~ql~~~l~~LH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~  157 (286)
T cd07847          83 DHTVLNELEK--NPRGVPEHLIKKIIWQTLQAVNFCHKH---NCIHRDVKPENILITKQGQIKLCDFGFARILTGPGDDY  157 (286)
T ss_pred             CccHHHHHHh--CCCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCChhhEEEcCCCcEEECccccceecCCCcccc
Confidence            9988888876  445699999999999999999999999   99999999999999999999999999987543322   


Q ss_pred             ccccCCCCccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhh-------hhhh-hhh
Q 044568          149 VIDKRDKGYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFI-------NREL-NKL  219 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~  219 (257)
                      ....++..|+|||.+.+ ..++.++|+||||+++|||++|..||......+..............       .... ..+
T Consensus       158 ~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (286)
T cd07847         158 TDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGKSDVDQLYLIRKTLGDLIPRHQQIFSTNQFFKGL  237 (286)
T ss_pred             cCcccccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChHHhhhcccccccccc
Confidence            23346678999999876 45789999999999999999999999755322211111110000000       0000 000


Q ss_pred             hcCCC---C-----CHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          220 VRGTK---V-----DKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       220 ~~~~~---~-----~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ..+..   .     .......+.+++.+||+.+|++|| +.|+++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~  282 (286)
T cd07847         238 SIPEPETREPLESKFPNISSPALSFLKGCLQMDPTERLSCEELLE  282 (286)
T ss_pred             cCCCcccccCHHHHhccCCHHHHHHHHHHhcCCccccCCHHHHhc
Confidence            00000   0     012246788999999999999999 999975

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=100.00  E-value=4.9e-34  Score=239.84  Aligned_cols=237  Identities=18%  Similarity=0.170  Sum_probs=174.3

Q ss_pred             ccccceeeecccC-----CCCCeeeccchh-hhHHHHhHhhhccccccccCCceeeeceeeee-cCceeEEEeecCCCCH
Q 044568            4 TKLSNFYRSSFNA-----RNSPWISRVSWT-ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL-TSVSGKIERPVRNGSL   76 (257)
Q Consensus         4 ~~~~~~y~~~~~~-----~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~-~~~~~lV~E~~~~gsL   76 (257)
                      +.++.||+|...+     +..+++|...-. ...+.-........+.++.|+|++++.+.+.. ....++++||+++|+|
T Consensus        17 g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~~~~~~~~L   96 (280)
T cd05043          17 GTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDGEPPFVLYPYMNWGNL   96 (280)
T ss_pred             cCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCCEEEEEcCCCCcH
Confidence            5688999999877     555666644311 11000000011112337899999999998765 5678899999999999


Q ss_pred             HHHHhccCC------CCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc--
Q 044568           77 TDIIFCSAE------RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF--  148 (257)
Q Consensus        77 ~~~l~~~~~------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~--  148 (257)
                      .+++.....      ..+++.++..++.|++.||.|||++   +++|+||+|+||++++++.+|++|||+++......  
T Consensus        97 ~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~---~i~H~di~p~nil~~~~~~~kl~d~g~~~~~~~~~~~  173 (280)
T cd05043          97 KLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKR---GVIHKDIAARNCVIDEELQVKITDNALSRDLFPMDYH  173 (280)
T ss_pred             HHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccCHhhEEEcCCCcEEECCCCCcccccCCceE
Confidence            999964321      4689999999999999999999999   99999999999999999999999999987542221  


Q ss_pred             ---ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCC
Q 044568          149 ---VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTK  224 (257)
Q Consensus       149 ---~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (257)
                         ....++..|+|||.+.+..++.++||||||+++||+++ |+.||......    ....+...         ... ..
T Consensus       174 ~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~----~~~~~~~~---------~~~-~~  239 (280)
T cd05043         174 CLGDNENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEIDPF----EMAAYLKD---------GYR-LA  239 (280)
T ss_pred             EeCCCCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcCCHH----HHHHHHHc---------CCC-CC
Confidence               12234556999999988889999999999999999999 99999654211    11111100         000 01


Q ss_pred             CCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          225 VDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       225 ~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      .+...+..+.+++.+||+.+|++|| +.|+++.|
T Consensus       240 ~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l  273 (280)
T cd05043         240 QPINCPDELFAVMACCWALDPEERPSFSQLVQCL  273 (280)
T ss_pred             CCCcCCHHHHHHHHHHcCCChhhCCCHHHHHHHH
Confidence            1223456789999999999999999 99998865

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=100.00  E-value=2e-34  Score=253.04  Aligned_cols=177  Identities=16%  Similarity=0.131  Sum_probs=147.7

Q ss_pred             ccccceeeecccC-CCCCeeeccch------------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||++.... +..+++|.+.-            .+|++++         .++.|+|++++...+...+..++||||
T Consensus        12 G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il---------~~~~h~~iv~~~~~~~~~~~~~lv~E~   82 (382)
T cd05625          12 GAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDIL---------AEADNEWVVRLYYSFQDKDNLYFVMDY   82 (382)
T ss_pred             CCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHH---------HhCCCCcCCeEEEEEEeCCEEEEEEeC
Confidence            5688999998654 45567776542            2233333         377899999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC----
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE----  146 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~----  146 (257)
                      |++|+|.+++.  ....+++..+..++.|++.||.|||++   +|+||||||+|||++.++.+||+|||++.....    
T Consensus        83 ~~gg~L~~~l~--~~~~~~e~~~~~~~~qi~~al~~lH~~---~ivHrDlKp~NILl~~~g~~kL~DFGla~~~~~~~~~  157 (382)
T cd05625          83 IPGGDMMSLLI--RMGIFPEDLARFYIAELTCAVESVHKM---GFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDS  157 (382)
T ss_pred             CCCCcHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEEeECCCCccccccccc
Confidence            99999999997  345789999999999999999999999   999999999999999999999999998642110    


Q ss_pred             ----------------------------------------------CcccccCCCCccCcccccCCCCCccccchhHHHH
Q 044568          147 ----------------------------------------------DFVIDKRDKGYMAPECYKRTPISVKADVYGYGIV  180 (257)
Q Consensus       147 ----------------------------------------------~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~  180 (257)
                                                                    ......||+.|+|||.+.+..++.++||||+||+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvi  237 (382)
T cd05625         158 KYYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVI  237 (382)
T ss_pred             cccccccccccccccccccccccccccccccccchhhhhccccccccccccccCcccCCHHHhcCCCCCCeeeEEechHH
Confidence                                                          0012357888999999998889999999999999


Q ss_pred             HHHHHhcCCCCCcC
Q 044568          181 LLETICCRKNMEID  194 (257)
Q Consensus       181 l~el~~g~~pf~~~  194 (257)
                      +|||++|+.||...
T Consensus       238 l~elltG~~Pf~~~  251 (382)
T cd05625         238 LYEMLVGQPPFLAQ  251 (382)
T ss_pred             HHHHHhCCCCCCCC
Confidence            99999999999755

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=100.00  E-value=9.8e-35  Score=254.39  Aligned_cols=220  Identities=16%  Similarity=0.122  Sum_probs=166.2

Q ss_pred             ccccceeeecccC-CCCCeeeccch------------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||+++... +..+++|....            .+|++.+         .++.|+|++++...+...+..++||||
T Consensus        12 G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il---------~~l~h~~iv~~~~~~~~~~~~~lv~E~   82 (376)
T cd05598          12 GAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDIL---------AEADNEWVVKLYYSFQDKDNLYFVMDY   82 (376)
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHH---------HhCCCCCcceEEEEEEcCCEEEEEEeC
Confidence            5688999998554 55667776532            2233333         378899999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC----
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE----  146 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~----  146 (257)
                      +++|+|.+++.  ....+++..+..++.|++.||.|||++   +|+||||||+||+++.++.++|+|||++.....    
T Consensus        83 ~~~g~L~~~i~--~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~Nill~~~~~ikL~DFG~a~~~~~~~~~  157 (376)
T cd05598          83 IPGGDMMSLLI--RLGIFEEDLARFYIAELTCAIESVHKM---GFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDS  157 (376)
T ss_pred             CCCCcHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCCHHHEEECCCCCEEEEeCCCCccccccccc
Confidence            99999999997  445688999999999999999999999   999999999999999999999999998642110    


Q ss_pred             ------------------------------------------CcccccCCCCccCcccccCCCCCccccchhHHHHHHHH
Q 044568          147 ------------------------------------------DFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLET  184 (257)
Q Consensus       147 ------------------------------------------~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el  184 (257)
                                                                ......||+.|+|||++.+..++.++|||||||++|||
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyel  237 (376)
T cd05598         158 KYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEM  237 (376)
T ss_pred             cccccccccccccccccccccccccccccchhhhhhhhcccccccccCCCccccCHHHHcCCCCCcceeeeeccceeeeh
Confidence                                                      00123688899999999988899999999999999999


Q ss_pred             HhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC
Q 044568          185 ICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP  249 (257)
Q Consensus       185 ~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP  249 (257)
                      ++|+.||...........+..|.          .... ..........+.+++.+|+ .+|.+|+
T Consensus       238 l~G~~Pf~~~~~~~~~~~i~~~~----------~~~~-~~~~~~~s~~~~~li~~l~-~~p~~R~  290 (376)
T cd05598         238 LVGQPPFLADTPAETQLKVINWE----------TTLH-IPSQAKLSREASDLILRLC-CGAEDRL  290 (376)
T ss_pred             hhCCCCCCCCCHHHHHHHHhccC----------cccc-CCCCCCCCHHHHHHHHHHh-cCHhhcC
Confidence            99999997653221111111110          0000 0111123455677777766 4999999

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=100.00  E-value=1.1e-33  Score=234.56  Aligned_cols=233  Identities=17%  Similarity=0.206  Sum_probs=174.8

Q ss_pred             ccccceeeecccC-CCCCeeeccchh----hhHHHHhHhhhccccccccCCceeeeceeeee-cCceeEEEeecCCCCHH
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSWT----ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL-TSVSGKIERPVRNGSLT   77 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~-~~~~~lV~E~~~~gsL~   77 (257)
                      +.++.||+++... ++.+++|.....    ...+... .... .+.+++|+|++++.+.+.. ....++||||+++++|.
T Consensus        11 g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~-~e~~-~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~~~~~l~   88 (257)
T cd08223          11 GSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAE-QEAQ-LLSQLKHPNIVAYRESWEGEDGLLYIVMGFCEGGDLY   88 (257)
T ss_pred             CCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHH-HHHH-HHHhCCCCCeeeeeeeecCCCCEEEEEecccCCCcHH
Confidence            4678899998654 455677765421    1111111 1111 3348889999999887764 44678999999999999


Q ss_pred             HHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---cccccCC
Q 044568           78 DIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---FVIDKRD  154 (257)
Q Consensus        78 ~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~~~~~~~  154 (257)
                      +++.......+++.++..++.|++.|+.+||++   +++|+||+|+||+++.++.++|+|||++......   .....++
T Consensus        89 ~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~~---~i~H~di~p~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~  165 (257)
T cd08223          89 HKLKEQKGKLLPENQVVEWFVQIAMALQYLHEK---HILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQCDMASTLIGT  165 (257)
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCchhEEEecCCcEEEecccceEEecccCCccccccCC
Confidence            999764456689999999999999999999999   9999999999999999999999999988654221   1234567


Q ss_pred             CCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHH
Q 044568          155 KGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLV  234 (257)
Q Consensus       155 ~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  234 (257)
                      +.|+|||.+.+..++.++|+||+|+++|++++|+.||.....  .     ......     ......  ..+....+.+.
T Consensus       166 ~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~--~-----~~~~~~-----~~~~~~--~~~~~~~~~~~  231 (257)
T cd08223         166 PYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDM--N-----SLVYRI-----IEGKLP--PMPKDYSPELG  231 (257)
T ss_pred             cCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCH--H-----HHHHHH-----HhcCCC--CCccccCHHHH
Confidence            789999999988889999999999999999999999974311  1     111000     001111  22344567899


Q ss_pred             HHHHHcccCCCCCCC-hHHHHH
Q 044568          235 KVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       235 ~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +++.+||+.+|++|| +.++++
T Consensus       232 ~li~~~l~~~p~~Rp~~~~~l~  253 (257)
T cd08223         232 ELIATMLSKRPEKRPSVKSILR  253 (257)
T ss_pred             HHHHHHhccCcccCCCHHHHhc
Confidence            999999999999999 999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>PHA03211 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=8.9e-34  Score=253.24  Aligned_cols=238  Identities=16%  Similarity=0.120  Sum_probs=176.0

Q ss_pred             ccccceeeecccCCC-CCeeeccc---hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHH
Q 044568            4 TKLSNFYRSSFNARN-SPWISRVS---WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDI   79 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~-~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~   79 (257)
                      +.++.||++...... .+++|...   +.+|++++.         ++.|+||+++.+.+...+..++|||++. ++|.++
T Consensus       180 G~~G~Vy~a~~~~~~~~vavK~~~~~~~~~E~~iL~---------~L~HpnIv~l~~~~~~~~~~~lv~e~~~-~~L~~~  249 (461)
T PHA03211        180 GSEGCVFESSHPDYPQRVVVKAGWYASSVHEARLLR---------RLSHPAVLALLDVRVVGGLTCLVLPKYR-SDLYTY  249 (461)
T ss_pred             CCCeEEEEEEECCCCCEEEEecccccCHHHHHHHHH---------HCCCCCCCcEEEEEEECCEEEEEEEccC-CCHHHH
Confidence            568899999976654 46677533   456777776         8899999999999999999999999995 799998


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-----ccccCC
Q 044568           80 IFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-----VIDKRD  154 (257)
Q Consensus        80 l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-----~~~~~~  154 (257)
                      +.. ....+++.++..++.|++.||.|||++   +|+||||||+||+++.++.++|+|||+++......     ....||
T Consensus       250 l~~-~~~~l~~~~~~~i~~qi~~aL~yLH~~---gIvHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~GT  325 (461)
T PHA03211        250 LGA-RLRPLGLAQVTAVARQLLSAIDYIHGE---GIIHRDIKTENVLVNGPEDICLGDFGAACFARGSWSTPFHYGIAGT  325 (461)
T ss_pred             HHh-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CEEECcCCHHHEEECCCCCEEEcccCCceecccccccccccccCCC
Confidence            864 445799999999999999999999999   99999999999999999999999999987533221     234588


Q ss_pred             CCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCCh----hhHHHHHHHHHhhh-h------------hhhh
Q 044568          155 KGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKP----EEIILTNWVYKCFI-N------------RELN  217 (257)
Q Consensus       155 ~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~----~~~~~~~~~~~~~~-~------------~~~~  217 (257)
                      ..|+|||++.+..++.++|||||||++|||++|..|+.......    ....+.+....... .            ....
T Consensus       326 ~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~~~lf~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~  405 (461)
T PHA03211        326 VDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHTASLFSASRGDERRPYDAQILRIIRQAQVHVDEFPQHAGSRLVSQYR  405 (461)
T ss_pred             cCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcCCCcccCCcccccCCcHHHHHHHHHhhccccccCCCCcchHHHHHHH
Confidence            99999999998889999999999999999999887654321111    01111111111000 0            0000


Q ss_pred             hh----hcCC-CCC-----HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          218 KL----VRGT-KVD-----KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       218 ~~----~~~~-~~~-----~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ..    ..+. ..+     ......+.+|+.+||+.||.+|| +.|+++
T Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~DP~~RPsa~elL~  454 (461)
T PHA03211        406 HRAARNRRPAYTRPAWTRYYKLDLDVEYLVCRALTFDGARRPSAAELLR  454 (461)
T ss_pred             hhhhcccCCccCCcchhhhccccchHHHHHHHHcccChhhCcCHHHHhh
Confidence            00    0000 000     01224678899999999999999 999986

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=2.4e-34  Score=241.68  Aligned_cols=239  Identities=19%  Similarity=0.271  Sum_probs=176.3

Q ss_pred             ccccceeeecccC-----CCCCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeee--cCceeE
Q 044568            4 TKLSNFYRSSFNA-----RNSPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL--TSVSGK   66 (257)
Q Consensus         4 ~~~~~~y~~~~~~-----~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~--~~~~~l   66 (257)
                      +.++.||+++...     +..+++|...          +.+|++.+.         ++.|+|++++.+.+..  ....++
T Consensus        15 g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~---------~l~~~~i~~~~~~~~~~~~~~~~l   85 (284)
T cd05038          15 GHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILR---------TLDHENIVKYKGVCEKPGGRSLRL   85 (284)
T ss_pred             CCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHH---------hCCCCChheEEeeeecCCCCceEE
Confidence            5688999998653     4556676544          233333333         8889999999998877  568899


Q ss_pred             EEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC
Q 044568           67 IERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE  146 (257)
Q Consensus        67 V~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~  146 (257)
                      ||||+++++|.+++.. ....+++..+..++.|++.||.|||++   +++|+|++|+||+++.++.++++|||.+.....
T Consensus        86 v~e~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~l~~aL~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~  161 (284)
T cd05038          86 IMEYLPSGSLRDYLQR-HRDQINLKRLLLFSSQICKGMDYLGSQ---RYIHRDLAARNILVESEDLVKISDFGLAKVLPE  161 (284)
T ss_pred             EEecCCCCCHHHHHHh-CccccCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHhEEEcCCCCEEEccccccccccc
Confidence            9999999999999975 344699999999999999999999999   999999999999999999999999999876542


Q ss_pred             Ccc------cccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhh
Q 044568          147 DFV------IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLV  220 (257)
Q Consensus       147 ~~~------~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (257)
                      ...      ...++..|++||.+....++.++|+||||+++|||++|..|+.............  .............+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  239 (284)
T cd05038         162 DKDYYYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGI--AQGQMIVTRLLELL  239 (284)
T ss_pred             CCcceeccCCCCCcccccCcHHHccCCCCcccchHHHhhhhheeeccCCCcccccchhcccccc--ccccccHHHHHHHH
Confidence            211      1223445999999988889999999999999999999999986542211000000  00000001111111


Q ss_pred             cC---CCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          221 RG---TKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       221 ~~---~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ..   ...+..++..+.+++.+||+.+|++|| +.|++++|
T Consensus       240 ~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l  280 (284)
T cd05038         240 KEGERLPRPPSCPDEVYDLMKLCWEAEPQDRPSFADLILIV  280 (284)
T ss_pred             HcCCcCCCCccCCHHHHHHHHHHhccChhhCCCHHHHHHHH
Confidence            11   122334557899999999999999999 99999875

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=100.00  E-value=4e-34  Score=242.76  Aligned_cols=234  Identities=15%  Similarity=0.111  Sum_probs=175.0

Q ss_pred             ccccceeeecc-cCCCCCeeeccchhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHHHhc
Q 044568            4 TKLSNFYRSSF-NARNSPWISRVSWTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFC   82 (257)
Q Consensus         4 ~~~~~~y~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~   82 (257)
                      +.++.||++.. .+++.+++|........+.-.+...-..+..+.|+|++.+.+.+...+..++|+||+++++|.+++. 
T Consensus        30 g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~-  108 (296)
T cd06655          30 GASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVVMEYLAGGSLTDVVT-  108 (296)
T ss_pred             CCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEEEEecCCCcHHHHHH-
Confidence            45678999874 4566667776543211110000001112337889999999999999999999999999999999985 


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---cccccCCCCccC
Q 044568           83 SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---FVIDKRDKGYMA  159 (257)
Q Consensus        83 ~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~~~~~~~~~~~a  159 (257)
                        ...+++.++..++.|++.|+.|||++   +++|+||+|+||+++.++.++|+|||++......   .....++..|+|
T Consensus       109 --~~~l~~~~~~~i~~~l~~al~~LH~~---~i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~a  183 (296)
T cd06655         109 --ETCMDEAQIAAVCRECLQALEFLHAN---QVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMA  183 (296)
T ss_pred             --hcCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEccCccchhcccccccCCCcCCCccccC
Confidence              34689999999999999999999999   9999999999999999999999999987643322   123356778999


Q ss_pred             cccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHH
Q 044568          160 PECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLW  239 (257)
Q Consensus       160 PE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  239 (257)
                      ||.+.+..++.++|+||||+++|++++|+.||.........   ...    . .    ........+......+.+++.+
T Consensus       184 PE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~~~~~~---~~~----~-~----~~~~~~~~~~~~~~~~~~li~~  251 (296)
T cd06655         184 PEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRAL---YLI----A-T----NGTPELQNPEKLSPIFRDFLNR  251 (296)
T ss_pred             cchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHH---HHH----H-h----cCCcccCCcccCCHHHHHHHHH
Confidence            99998888899999999999999999999999755211110   000    0 0    0000111233345678899999


Q ss_pred             cccCCCCCCC-hHHHHH
Q 044568          240 CVQDEPALRP-MKCAVM  255 (257)
Q Consensus       240 cl~~~p~~RP-~~ei~~  255 (257)
                      ||+.||++|| +.++++
T Consensus       252 ~l~~dp~~Rpt~~~il~  268 (296)
T cd06655         252 CLEMDVEKRGSAKELLQ  268 (296)
T ss_pred             HhhcChhhCCCHHHHhh
Confidence            9999999999 999875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>PTZ00036 glycogen synthase kinase; Provisional

Probab=100.00  E-value=2.9e-34  Score=256.15  Aligned_cols=239  Identities=16%  Similarity=0.135  Sum_probs=171.1

Q ss_pred             ccccceeeeccc-CCCCCeeeccc-----hhhhHHHHhHhhhccccccccCCceeeeceeeeec--------CceeEEEe
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS-----WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT--------SVSGKIER   69 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~-----~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~--------~~~~lV~E   69 (257)
                      +.++.||++... .+..+++|.+.     ..+|++++.         .++|+|++++.+.+...        ...++|||
T Consensus        77 G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~Ei~il~---------~l~h~niv~l~~~~~~~~~~~~~~~~~l~lvmE  147 (440)
T PTZ00036         77 GSFGVVYEAICIDTSEKVAIKKVLQDPQYKNRELLIMK---------NLNHINIIFLKDYYYTECFKKNEKNIFLNVVME  147 (440)
T ss_pred             CCCEEEEEEEECCCCCEEEEEEEecCcchHHHHHHHHH---------hcCCCCCcceeeeEeecccccCCCceEEEEEEe
Confidence            568899999865 55677887653     234555555         88899999988765432        24668999


Q ss_pred             ecCCCCHHHHHhcc--CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCC-ceEEeeecccccCCC
Q 044568           70 PVRNGSLTDIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW-TAKILDFGLAKLPNE  146 (257)
Q Consensus        70 ~~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~-~~kl~dfg~~~~~~~  146 (257)
                      |+++ +|.+++...  ....+++..+..++.|++.||.|||++   +|+||||||+||+++.++ .+||+|||+++....
T Consensus       148 ~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~---~IiHrDLKp~NILl~~~~~~vkL~DFGla~~~~~  223 (440)
T PTZ00036        148 FIPQ-TVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSK---FICHRDLKPQNLLIDPNTHTLKLCDFGSAKNLLA  223 (440)
T ss_pred             cCCc-cHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCcCHHHEEEcCCCCceeeeccccchhccC
Confidence            9974 787776532  456789999999999999999999999   999999999999998654 699999999875432


Q ss_pred             --CcccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHh----h--hhhhhh
Q 044568          147 --DFVIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKC----F--INRELN  217 (257)
Q Consensus       147 --~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~----~--~~~~~~  217 (257)
                        ......+++.|+|||.+.+. .++.++|||||||++|||++|.+||.+.................    .  ..+...
T Consensus       224 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~  303 (440)
T PTZ00036        224 GQRSVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIFSGQSSVDQLVRIIQVLGTPTEDQLKEMNPNYA  303 (440)
T ss_pred             CCCcccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhchhhh
Confidence              22345678889999998764 68999999999999999999999997653222111111000000    0  000000


Q ss_pred             hh----hcCC----CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          218 KL----VRGT----KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       218 ~~----~~~~----~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ..    ..+.    .++...+.++.+|+.+||+.||.+|| +.|+++
T Consensus       304 ~~~~~~~~~~~l~~~~p~~~~~~~~~li~~~L~~dP~~R~ta~e~l~  350 (440)
T PTZ00036        304 DIKFPDVKPKDLKKVFPKGTPDDAINFISQFLKYEPLKRLNPIEALA  350 (440)
T ss_pred             cccCCccCchhHHHHhccCCCHHHHHHHHHHCCCChhHCcCHHHHhC
Confidence            00    0000    12223456789999999999999999 999874

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=100.00  E-value=9e-35  Score=254.71  Aligned_cols=229  Identities=15%  Similarity=0.208  Sum_probs=179.6

Q ss_pred             ccccceeeecccCC-----CCCeeeccc----hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCC
Q 044568            4 TKLSNFYRSSFNAR-----NSPWISRVS----WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNG   74 (257)
Q Consensus         4 ~~~~~~y~~~~~~~-----~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~g   74 (257)
                      ++|++||+|.+-+-     -.++||...    -.+--+++.   ....+..++|++|++++|++.. ...+||||+++-|
T Consensus       400 GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflq---Ea~iMrnfdHphIikLIGv~~e-~P~WivmEL~~~G  475 (974)
T KOG4257|consen  400 GQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQ---EASIMRNFDHPHIIKLIGVCVE-QPMWIVMELAPLG  475 (974)
T ss_pred             CcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHH---HHHHHHhCCCcchhheeeeeec-cceeEEEecccch
Confidence            57999999985443     233454422    111111111   1113338899999999999865 5679999999999


Q ss_pred             CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCccc--cc
Q 044568           75 SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVI--DK  152 (257)
Q Consensus        75 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~~--~~  152 (257)
                      -|..+|.. +...|+..+...++.||+.||.|||+.   +.+||||.++|||+.....+||+|||+++-.......  ..
T Consensus       476 ELr~yLq~-nk~sL~l~tL~ly~~Qi~talaYLeSk---rfVHRDIAaRNiLVsSp~CVKLaDFGLSR~~ed~~yYkaS~  551 (974)
T KOG4257|consen  476 ELREYLQQ-NKDSLPLRTLTLYCYQICTALAYLESK---RFVHRDIAARNILVSSPQCVKLADFGLSRYLEDDAYYKASR  551 (974)
T ss_pred             hHHHHHHh-ccccchHHHHHHHHHHHHHHHHHHHhh---chhhhhhhhhheeecCcceeeecccchhhhccccchhhccc
Confidence            99999986 667799999999999999999999999   9999999999999999999999999999876554421  12


Q ss_pred             CC--CCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC--CCCH
Q 044568          153 RD--KGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT--KVDK  227 (257)
Q Consensus       153 ~~--~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  227 (257)
                      +.  .-|+|||.+....++.+||||.||+++||+++ |..||.+-...+                .+..+-.+.  +.|+
T Consensus       552 ~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgvkNsD----------------VI~~iEnGeRlP~P~  615 (974)
T KOG4257|consen  552 GKLPIKWMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPFQGVKNSD----------------VIGHIENGERLPCPP  615 (974)
T ss_pred             cccceeecCccccchhcccchhhHHHHHHHHHHHHHhcCCccccccccc----------------eEEEecCCCCCCCCC
Confidence            22  23999999999999999999999999999998 999998652222                112222222  6788


Q ss_pred             HHHHHHHHHHHHcccCCCCCCC-hHHHHHh
Q 044568          228 KNLENLVKVGLWCVQDEPALRP-MKCAVMM  256 (257)
Q Consensus       228 ~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~  256 (257)
                      .|++.|..++.+||+++|.+|| +.||...
T Consensus       616 nCPp~LYslmskcWayeP~kRPrftei~~~  645 (974)
T KOG4257|consen  616 NCPPALYSLMSKCWAYEPSKRPRFTEIKAI  645 (974)
T ss_pred             CCChHHHHHHHHHhccCcccCCcHHHHHHH
Confidence            9999999999999999999999 9998654

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.1e-33  Score=237.79  Aligned_cols=226  Identities=21%  Similarity=0.215  Sum_probs=172.2

Q ss_pred             ccccceeeecccCCCC-----Ceeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEE
Q 044568            4 TKLSNFYRSSFNARNS-----PWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIE   68 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~-----~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~   68 (257)
                      +.++.||++.......     +++|...          +.+|++.+.         ++.|+|++++.+.+.. +..++||
T Consensus        18 g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~---------~l~h~~i~~~~~~~~~-~~~~~v~   87 (279)
T cd05057          18 GAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMA---------SVDHPHVVRLLGICLS-SQVQLIT   87 (279)
T ss_pred             CCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHH---------hCCCCCcceEEEEEec-CceEEEE
Confidence            5688999998654333     4554432          223333433         7889999999998887 7889999


Q ss_pred             eecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc
Q 044568           69 RPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF  148 (257)
Q Consensus        69 E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~  148 (257)
                      ||+++|+|.+++.. ....+++..+..++.|++.|+.|||++   +++|+||+|+||+++.++.++|+|||.++......
T Consensus        88 e~~~~g~L~~~l~~-~~~~~~~~~~~~~~~qi~~~l~~LH~~---~i~H~di~p~nil~~~~~~~kL~dfg~~~~~~~~~  163 (279)
T cd05057          88 QLMPLGCLLDYVRN-HKDNIGSQYLLNWCVQIAKGMSYLEEK---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDE  163 (279)
T ss_pred             ecCCCCcHHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHhC---CEEecccCcceEEEcCCCeEEECCCcccccccCcc
Confidence            99999999999975 445689999999999999999999999   99999999999999999999999999987543221


Q ss_pred             c-----cccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcC
Q 044568          149 V-----IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRG  222 (257)
Q Consensus       149 ~-----~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (257)
                      .     ....+..|++||.+....++.++|+||||+++||+++ |..||.......    +...         .... ..
T Consensus       164 ~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~----~~~~---------~~~~-~~  229 (279)
T cd05057         164 KEYHAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIPAVE----IPDL---------LEKG-ER  229 (279)
T ss_pred             cceecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCCCCHHH----HHHH---------HhCC-CC
Confidence            1     1122456999999988888999999999999999998 999997542111    1000         0000 01


Q ss_pred             CCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          223 TKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       223 ~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ...+..+...+..++.+||..+|.+|| +.++++.|
T Consensus       230 ~~~~~~~~~~~~~~~~~~l~~~p~~Rp~~~~l~~~l  265 (279)
T cd05057         230 LPQPPICTIDVYMVLVKCWMIDAESRPTFKELINEF  265 (279)
T ss_pred             CCCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHHHH
Confidence            122233446788999999999999999 99998754

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=2.3e-34  Score=241.63  Aligned_cols=211  Identities=17%  Similarity=0.216  Sum_probs=173.2

Q ss_pred             cCCCCCeeeccc------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHHHhc
Q 044568           15 NARNSPWISRVS------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFC   82 (257)
Q Consensus        15 ~~~~~~~i~~~~------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~   82 (257)
                      ..+..++||.+.            +.+|++.++         .+.|++|+++...+.+.+...|||||..+|.|+|++. 
T Consensus        76 ~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMS---------sLNHPhII~IyEVFENkdKIvivMEYaS~GeLYDYiS-  145 (668)
T KOG0611|consen   76 KSGREVAIKSIRKDKIKDEQDLVHIRREIEIMS---------SLNHPHIIQIYEVFENKDKIVIVMEYASGGELYDYIS-  145 (668)
T ss_pred             cCCcEeehhhhhhhhcccHHHHHHHHHHHHHHh---------hcCCCceeehhhhhcCCceEEEEEEecCCccHHHHHH-
Confidence            455666766433            355666666         9999999999999999999999999999999999998 


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC--CcccccCCCCccCc
Q 044568           83 SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE--DFVIDKRDKGYMAP  160 (257)
Q Consensus        83 ~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~--~~~~~~~~~~~~aP  160 (257)
                       ..+.|++.++++++.||++|+.|+|++   +++|||||.+|||+|+++++|++|||++.....  .....+|++.|.+|
T Consensus       146 -er~~LsErEaRhfFRQIvSAVhYCHkn---rVvHRDLKLENILLD~N~NiKIADFGLSNly~~~kfLqTFCGSPLYASP  221 (668)
T KOG0611|consen  146 -ERGSLSEREARHFFRQIVSAVHYCHKN---RVVHRDLKLENILLDQNNNIKIADFGLSNLYADKKFLQTFCGSPLYASP  221 (668)
T ss_pred             -HhccccHHHHHHHHHHHHHHHHHHhhc---cceecccchhheeecCCCCeeeeccchhhhhccccHHHHhcCCcccCCc
Confidence             678899999999999999999999999   999999999999999999999999999876543  34677899999999


Q ss_pred             ccccCCCCC-ccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHH
Q 044568          161 ECYKRTPIS-VKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLW  239 (257)
Q Consensus       161 E~~~~~~~~-~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  239 (257)
                      |++.+.+|. +..|.||+|++||.+..|..||++.+   -...+...     ..+.+        ...+.+.....||.+
T Consensus       222 EIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~D---hk~lvrQI-----s~GaY--------rEP~~PSdA~gLIRw  285 (668)
T KOG0611|consen  222 EIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGRD---HKRLVRQI-----SRGAY--------REPETPSDASGLIRW  285 (668)
T ss_pred             cccCCCCCCCCccchhhHHHHHHHHhhcccccCCch---HHHHHHHh-----hcccc--------cCCCCCchHHHHHHH
Confidence            999999985 89999999999999999999998661   11111111     11111        112233456788889


Q ss_pred             cccCCCCCCC-hHHHHH
Q 044568          240 CVQDEPALRP-MKCAVM  255 (257)
Q Consensus       240 cl~~~p~~RP-~~ei~~  255 (257)
                      ||-.+|++|. +.+|+.
T Consensus       286 mLmVNP~RRATieDiAs  302 (668)
T KOG0611|consen  286 MLMVNPERRATIEDIAS  302 (668)
T ss_pred             HHhcCcccchhHHHHhh
Confidence            9999999999 998864

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=100.00  E-value=6e-34  Score=242.37  Aligned_cols=236  Identities=18%  Similarity=0.221  Sum_probs=170.7

Q ss_pred             cccccceeeecccCCCC-----CeeeccchhhhHH-HHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCH
Q 044568            3 CTKLSNFYRSSFNARNS-----PWISRVSWTADIE-VLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSL   76 (257)
Q Consensus         3 ~~~~~~~y~~~~~~~~~-----~~i~~~~~~~~~~-~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL   76 (257)
                      .+.++.||++.....+.     +++|......... ...+........++.|+|++++.+.+... ..++++||+++|+|
T Consensus        17 ~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~-~~~~v~e~~~~g~l   95 (303)
T cd05110          17 SGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSP-TIQLVTQLMPHGCL   95 (303)
T ss_pred             cCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCC-CceeeehhcCCCCH
Confidence            35789999998765443     3555433210000 00000011123378899999999988654 56789999999999


Q ss_pred             HHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-----ccc
Q 044568           77 TDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-----VID  151 (257)
Q Consensus        77 ~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-----~~~  151 (257)
                      .+++.. ....+++..+..++.|++.||.|||++   +++|+||+|+||+++.++.+||+|||+++......     ...
T Consensus        96 ~~~~~~-~~~~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~dikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~  171 (303)
T cd05110          96 LDYVHE-HKDNIGSQLLLNWCVQIAKGMMYLEER---RLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGG  171 (303)
T ss_pred             HHHHHh-cccCCCHHHHHHHHHHHHHHHHHHhhc---CeeccccccceeeecCCCceEEccccccccccCcccccccCCC
Confidence            999975 445689999999999999999999999   99999999999999999999999999987543221     122


Q ss_pred             cCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHH
Q 044568          152 KRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNL  230 (257)
Q Consensus       152 ~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (257)
                      .++..|++||.+.+..++.++||||||+++||+++ |..||.......    ...+...    .   .   ....+....
T Consensus       172 ~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~~~~----~~~~~~~----~---~---~~~~~~~~~  237 (303)
T cd05110         172 KMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIPTRE----IPDLLEK----G---E---RLPQPPICT  237 (303)
T ss_pred             ccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCCCHHH----HHHHHHC----C---C---CCCCCCCCC
Confidence            33557999999988889999999999999999997 899996542111    1111100    0   0   001122344


Q ss_pred             HHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          231 ENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       231 ~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ..+.+++..||..+|++|| ++++++.|
T Consensus       238 ~~~~~li~~c~~~~p~~Rp~~~~l~~~l  265 (303)
T cd05110         238 IDVYMVMVKCWMIDADSRPKFKELAAEF  265 (303)
T ss_pred             HHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            6788999999999999999 99998754

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=1.1e-33  Score=238.45  Aligned_cols=230  Identities=20%  Similarity=0.195  Sum_probs=176.8

Q ss_pred             ccccceeeecccCCC-CCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSFNARN-SPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~-~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +.++.||++....+. .+++|...          +.+|++.+.         .+.|+|++++.+.+...+..++||||++
T Consensus        16 g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~i~~~~~~~~~~~~~~lv~e~~~   86 (284)
T cd06620          16 GNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMH---------ECRSPYIVSFYGAFLNENNICMCMEFMD   86 (284)
T ss_pred             CCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHH---------HcCCCCcceEeeeEecCCEEEEEEecCC
Confidence            567899999876544 44554322          233444433         7889999999999999999999999999


Q ss_pred             CCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhh-CCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC-Cccc
Q 044568           73 NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHD-ECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE-DFVI  150 (257)
Q Consensus        73 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~-~~~~  150 (257)
                      +++|.+++.  ....+++..+..++.+++.|+.|||+ +   +++|+|++|+||++++++.++|+|||++..... ....
T Consensus        87 ~~~L~~~~~--~~~~~~~~~~~~~~~~i~~~l~~LH~~~---~i~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~~~~~~  161 (284)
T cd06620          87 CGSLDRIYK--KGGPIPVEILGKIAVAVVEGLTYLYNVH---RIMHRDIKPSNILVNSRGQIKLCDFGVSGELINSIADT  161 (284)
T ss_pred             CCCHHHHHH--hccCCCHHHHHHHHHHHHHHHHHHHHhc---CeeccCCCHHHEEECCCCcEEEccCCcccchhhhccCc
Confidence            999999987  34568999999999999999999997 5   899999999999999999999999998764322 2234


Q ss_pred             ccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhh----HHHHHHHHHhhhhhhhhhhhc---CC
Q 044568          151 DKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEE----IILTNWVYKCFINRELNKLVR---GT  223 (257)
Q Consensus       151 ~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~---~~  223 (257)
                      ..++..|+|||.+.+..++.++|+|||||++|++++|..||.........    .....+         ......   +.
T Consensus       162 ~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~  232 (284)
T cd06620         162 FVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILDL---------LQQIVQEPPPR  232 (284)
T ss_pred             cccCcccCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCcccchhhhhhhhhhHHHHH---------HHHHhhccCCC
Confidence            46788899999998888899999999999999999999999865332110    001111         111111   11


Q ss_pred             CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHh
Q 044568          224 KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMM  256 (257)
Q Consensus       224 ~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~  256 (257)
                      ......+..+.+++.+||+.||.+|| +.|+++.
T Consensus       233 ~~~~~~~~~~~~li~~~l~~dp~~Rpt~~e~~~~  266 (284)
T cd06620         233 LPSSDFPEDLRDFVDACLLKDPTERPTPQQLCAM  266 (284)
T ss_pred             CCchhcCHHHHHHHHHHhcCCcccCcCHHHHhcC
Confidence            11223556789999999999999999 9999874

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=100.00  E-value=1.7e-33  Score=238.73  Aligned_cols=203  Identities=18%  Similarity=0.221  Sum_probs=155.6

Q ss_pred             cccCCceeeeceeeeecCceeEEEeecCCCCHHHHHhccC---------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCe
Q 044568           45 RIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSA---------ERNPYWNQRVRIALDVAKGILYLHDECEPPI  115 (257)
Q Consensus        45 ~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~---------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i  115 (257)
                      .+.|+|++++.+.+...+..++||||+++|+|.+++....         ...+++.+...++.|++.|+.|||++   ++
T Consensus        75 ~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~---~i  151 (296)
T cd05095          75 RLKDPNIIRLLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSL---NF  151 (296)
T ss_pred             hCCCCCcceEEEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHC---Ce
Confidence            8889999999999999999999999999999999997532         13477888999999999999999999   99


Q ss_pred             eeccCCCCceeeCCCCceEEeeecccccCCCCc-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh--cC
Q 044568          116 LHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC--CR  188 (257)
Q Consensus       116 ~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~--g~  188 (257)
                      +|+||||+||+++.++.++|+|||.+.......     .....+..|++||....+.++.++|+||||+++|||++  |.
T Consensus       152 ~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el~~~~~~  231 (296)
T cd05095         152 VHRDLATRNCLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEILTLCKE  231 (296)
T ss_pred             ecccCChheEEEcCCCCEEeccCcccccccCCcceeccCcCcCccccCCHHHHhcCCccchhhhhHHHHHHHHHHHhCCC
Confidence            999999999999999999999999987532221     11222456999999888889999999999999999998  77


Q ss_pred             CCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          189 KNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       189 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      .||.......   ..... ...+. .......  ...+..++..+.+++.+||+.||.+|| +.||++.|
T Consensus       232 ~p~~~~~~~~---~~~~~-~~~~~-~~~~~~~--~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l  294 (296)
T cd05095         232 QPYSQLSDEQ---VIENT-GEFFR-DQGRQVY--LPKPALCPDSLYKLMLSCWRRNAKERPSFQEIHATL  294 (296)
T ss_pred             CCccccChHH---HHHHH-HHHHh-hcccccc--CCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHH
Confidence            8886432111   11110 00000 0000000  112233457899999999999999999 99998765

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>PHA03207 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=6e-34  Score=250.81  Aligned_cols=237  Identities=17%  Similarity=0.169  Sum_probs=177.3

Q ss_pred             ccccceeeeccc---CCCCCeeeccc----hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCH
Q 044568            4 TKLSNFYRSSFN---ARNSPWISRVS----WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSL   76 (257)
Q Consensus         4 ~~~~~~y~~~~~---~~~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL   76 (257)
                      +.++.||++...   .+..+++|...    ..+|++.+.         ++.|+|++++.+.+......++|||++. ++|
T Consensus       103 G~~g~Vy~~~~~~~~~~~~v~vK~~~~~~~~~~E~~il~---------~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l  172 (392)
T PHA03207        103 GSEGEVFVCTKHGDEQRKKVIVKAVTGGKTPGREIDILK---------TISHRAIINLIHAYRWKSTVCMVMPKYK-CDL  172 (392)
T ss_pred             CCCeEEEEEEEcCCccceeEEEEeccccccHHHHHHHHH---------hcCCCCccceeeeEeeCCEEEEEehhcC-CCH
Confidence            457789988643   23445666543    356777766         8889999999999999999999999996 689


Q ss_pred             HHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-----ccc
Q 044568           77 TDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-----VID  151 (257)
Q Consensus        77 ~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-----~~~  151 (257)
                      .+++.  ....+++.++..++.|++.||.|||++   +|+||||||+||+++.++.++|+|||++.......     ...
T Consensus       173 ~~~l~--~~~~l~~~~~~~i~~ql~~aL~~LH~~---givHrDlkp~Nill~~~~~~~l~DfG~a~~~~~~~~~~~~~~~  247 (392)
T PHA03207        173 FTYVD--RSGPLPLEQAITIQRRLLEALAYLHGR---GIIHRDVKTENIFLDEPENAVLGDFGAACKLDAHPDTPQCYGW  247 (392)
T ss_pred             HHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEcCCCCEEEccCccccccCccccccccccc
Confidence            99885  557799999999999999999999999   99999999999999999999999999986543221     234


Q ss_pred             cCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhh---------h----hhhhh
Q 044568          152 KRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFI---------N----RELNK  218 (257)
Q Consensus       152 ~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~---------~----~~~~~  218 (257)
                      .+|..|+|||++....++.++|||||||++|||++|+.||...........+.........         .    .....
T Consensus       248 ~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~  327 (392)
T PHA03207        248 SGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVTLFGKQVKSSSSQLRSIIRCMQVHPLEFPQNGSTNLCKHFKQ  327 (392)
T ss_pred             ccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCCCCcHHHHHHHHHHhccCccccCCccchhHHHHHHh
Confidence            6888999999999888999999999999999999999999765332211112111110000         0    00000


Q ss_pred             hh---cCC-CCC-----HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          219 LV---RGT-KVD-----KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       219 ~~---~~~-~~~-----~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ..   .+. ..+     ......+.+++.+||+.||++|| +.|+++
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~Rpsa~e~l~  374 (392)
T PHA03207        328 YAIVLRPPYTIPPVIRKYGMHMDVEYLIAKMLTFDQEFRPSAQDILS  374 (392)
T ss_pred             hcccccCCccccchhhccCcchhHHHHHHHHhccChhhCCCHHHHhh
Confidence            00   000 000     11235678899999999999999 999975

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=100.00  E-value=6e-34  Score=237.64  Aligned_cols=234  Identities=17%  Similarity=0.122  Sum_probs=172.9

Q ss_pred             ccccceeeeccc-CCCCCeeeccchh--hhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHHH
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSWT--ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDII   80 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l   80 (257)
                      +.++.||+++.. ++..+++|.....  ...+...  ..-..+..++|+|++++.+.+...+..++||||+++++|.+++
T Consensus        20 g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~--~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~~~L~~~~   97 (267)
T cd06645          20 GTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQ--QEIIMMKDCKHSNIVAYFGSYLRRDKLWICMEFCGGGSLQDIY   97 (267)
T ss_pred             CCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHH--HHHHHHHhCCCCCeeeEEEEEEeCCEEEEEEeccCCCcHHHHH
Confidence            567899999865 4555666654321  1111100  0001333788999999999999999999999999999999999


Q ss_pred             hccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---cccccCCCCc
Q 044568           81 FCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---FVIDKRDKGY  157 (257)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~~~~~~~~~~  157 (257)
                      .  ....+++.++..++.|++.|+.|||++   +++|+||+|+||+++.++.++|+|||++......   .....++..|
T Consensus        98 ~--~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y  172 (267)
T cd06645          98 H--VTGPLSESQIAYVSRETLQGLYYLHSK---GKMHRDIKGANILLTDNGHVKLADFGVSAQITATIAKRKSFIGTPYW  172 (267)
T ss_pred             H--hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEECcceeeeEccCcccccccccCcccc
Confidence            7  455789999999999999999999999   9999999999999999999999999987643322   2344678889


Q ss_pred             cCccccc---CCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC-CCCHHHHHHH
Q 044568          158 MAPECYK---RTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT-KVDKKNLENL  233 (257)
Q Consensus       158 ~aPE~~~---~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l  233 (257)
                      +|||.+.   ...++.++|+||+|+++|+|++|..||....+...   ....     ...   ....+. ......+..+
T Consensus       173 ~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~~~~~---~~~~-----~~~---~~~~~~~~~~~~~~~~~  241 (267)
T cd06645         173 MAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRA---LFLM-----TKS---NFQPPKLKDKMKWSNSF  241 (267)
T ss_pred             cChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCcccccchhh---HHhh-----hcc---CCCCCcccccCCCCHHH
Confidence            9999874   44578999999999999999999999864421111   0000     000   000000 0111234568


Q ss_pred             HHHHHHcccCCCCCCC-hHHHHH
Q 044568          234 VKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       234 ~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .+++.+||+.+|++|| ++++++
T Consensus       242 ~~li~~~l~~~P~~R~~~~~ll~  264 (267)
T cd06645         242 HHFVKMALTKNPKKRPTAEKLLQ  264 (267)
T ss_pred             HHHHHHHccCCchhCcCHHHHhc
Confidence            8999999999999999 999975

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=100.00  E-value=4.4e-34  Score=250.00  Aligned_cols=237  Identities=17%  Similarity=0.212  Sum_probs=173.4

Q ss_pred             ccccceeeecc-cCCCCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeecC-----ceeE
Q 044568            4 TKLSNFYRSSF-NARNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTS-----VSGK   66 (257)
Q Consensus         4 ~~~~~~y~~~~-~~~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~-----~~~l   66 (257)
                      +.++.||++.. .+++.+++|....           .+|++.+.         .++|+|++++.+.+...+     ..++
T Consensus        11 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~---------~l~h~niv~~~~~~~~~~~~~~~~~~l   81 (372)
T cd07853          11 GAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLC---------FFKHDNVLSALDILQPPHIDPFEEIYV   81 (372)
T ss_pred             CCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHH---------hCCCCCcCCHhheecCCCccccceEEE
Confidence            56889999985 4667778886532           23333333         788999999999988766     7899


Q ss_pred             EEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC
Q 044568           67 IERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE  146 (257)
Q Consensus        67 V~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~  146 (257)
                      ||||+. ++|.+.+.  ....+++..+..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++.....
T Consensus        82 v~e~~~-~~l~~~~~--~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivH~dlkp~Nili~~~~~~kL~Dfg~a~~~~~  155 (372)
T cd07853          82 VTELMQ-SDLHKIIV--SPQPLSSDHVKVFLYQILRGLKYLHSA---GILHRDIKPGNLLVNSNCVLKICDFGLARVEEP  155 (372)
T ss_pred             Eeeccc-cCHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChHHEEECCCCCEEeccccceeeccc
Confidence            999996 58888886  456799999999999999999999999   999999999999999999999999999875332


Q ss_pred             C----cccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHH-----H-hhhhhh
Q 044568          147 D----FVIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVY-----K-CFINRE  215 (257)
Q Consensus       147 ~----~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~-----~-~~~~~~  215 (257)
                      .    .....++..|+|||.+.+. .++.++||||+||++|||++|+.||...........+.....     . ......
T Consensus       156 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~  235 (372)
T cd07853         156 DESKHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQSPIQQLDLITDLLGTPSLEAMRSACEG  235 (372)
T ss_pred             CccccCCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHhhHH
Confidence            2    1233567789999998764 478999999999999999999999975532211100000000     0 000000


Q ss_pred             hhh-hhc----CC------CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          216 LNK-LVR----GT------KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       216 ~~~-~~~----~~------~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ... +..    +.      .......+.+.+++.+||+.||++|| +.|+++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~  287 (372)
T cd07853         236 ARAHILRGPHKPPSLPVLYTLSSQATHEAVHLLCRMLVFDPDKRISAADALA  287 (372)
T ss_pred             HHHHHHhCCCCCCchHHhcccCCCCCHHHHHHHHHhCCCChhhCcCHHHHhc
Confidence            000 000    00      11223356789999999999999999 999875

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=100.00  E-value=1.3e-33  Score=234.00  Aligned_cols=226  Identities=18%  Similarity=0.193  Sum_probs=176.7

Q ss_pred             ccccceeeecccC-CCCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      +.++.+|.++... +..+++|....           .++++.         +.++.|+|++++.+.+...+..++||||+
T Consensus        11 g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~---------l~~l~~~~i~~~~~~~~~~~~~~lv~e~~   81 (256)
T cd08218          11 GSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAV---------LSNMKHPNIVQYQESFEENGNLYIVMDYC   81 (256)
T ss_pred             CCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHH---------HHhCCCCCeeeeEeeecCCCeEEEEEecC
Confidence            4577888888554 45567776542           223333         34888999999999999999999999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc---
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF---  148 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~---  148 (257)
                      ++++|.+++.......+++.++..++.|++.|+.|||++   +++|+|++|+||+++.++.++++|||.+.......   
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~  158 (256)
T cd08218          82 EGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVELA  158 (256)
T ss_pred             CCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCEEEeeccceeecCcchhhh
Confidence            999999999753445689999999999999999999999   99999999999999999999999999887543322   


Q ss_pred             ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHH
Q 044568          149 VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKK  228 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (257)
                      ....++..|+|||.+.+..++.++|+||||+++|++++|+.||.....  .. ....+         .....  ...+..
T Consensus       159 ~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~--~~-~~~~~---------~~~~~--~~~~~~  224 (256)
T cd08218         159 RTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEAGNM--KN-LVLKI---------IRGSY--PPVSSH  224 (256)
T ss_pred             hhccCCccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCCccCCCH--HH-HHHHH---------hcCCC--CCCccc
Confidence            233567789999999888889999999999999999999999964311  10 00000         00000  123344


Q ss_pred             HHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          229 NLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       229 ~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ....+.+++.+||+.+|.+|| +.|+++
T Consensus       225 ~~~~~~~li~~~l~~~p~~Rp~~~~vl~  252 (256)
T cd08218         225 YSYDLRNLVSQLFKRNPRDRPSVNSILE  252 (256)
T ss_pred             CCHHHHHHHHHHhhCChhhCcCHHHHhh
Confidence            567799999999999999999 999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=7.3e-34  Score=238.80  Aligned_cols=226  Identities=19%  Similarity=0.192  Sum_probs=174.7

Q ss_pred             ccccceeeecccC-CCCCeeeccc---------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCC
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS---------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRN   73 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~   73 (257)
                      +.++.||+++... +..+++|...         +.+|++.+.         ++.|+|++++.+.+...+..++||||+++
T Consensus        16 g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~---------~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   86 (280)
T cd06611          16 GAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILS---------ECKHPNIVGLYEAYFYENKLWILIEFCDG   86 (280)
T ss_pred             CCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHH---------hCCCCceeEEEEEEecCCeEEEEeeccCC
Confidence            5678999999754 5556666543         223444444         88899999999999999999999999999


Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---ccc
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---FVI  150 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~~~  150 (257)
                      ++|.+++.. ....+++.++..++.|++.|+.|||++   +++|+|++|+||+++.++.++++|||.+......   ...
T Consensus        87 ~~L~~~~~~-~~~~l~~~~~~~~~~ql~~~l~~lh~~---~i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~  162 (280)
T cd06611          87 GALDSIMLE-LERGLTEPQIRYVCRQMLEALNFLHSH---KVIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQKRDT  162 (280)
T ss_pred             CcHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEECCCCCEEEccCccchhhcccccccce
Confidence            999999975 446799999999999999999999999   9999999999999999999999999987643221   233


Q ss_pred             ccCCCCccCccccc-----CCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC-C
Q 044568          151 DKRDKGYMAPECYK-----RTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT-K  224 (257)
Q Consensus       151 ~~~~~~~~aPE~~~-----~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  224 (257)
                      ..++..|++||.+.     ...++.++|+||||+++|||++|..||.......   ....+          .....+. .
T Consensus       163 ~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~~~~~---~~~~~----------~~~~~~~~~  229 (280)
T cd06611         163 FIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHELNPMR---VLLKI----------LKSEPPTLD  229 (280)
T ss_pred             eecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcccCCHHH---HHHHH----------hcCCCCCcC
Confidence            45778899999875     3346789999999999999999999996542111   11111          0000000 1


Q ss_pred             CCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          225 VDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       225 ~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .+......+.+++.+||+.+|.+|| +.++++
T Consensus       230 ~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  261 (280)
T cd06611         230 QPSKWSSSFNDFLKSCLVKDPDDRPTAAELLK  261 (280)
T ss_pred             CcccCCHHHHHHHHHHhccChhhCcCHHHHhc
Confidence            2233456788999999999999999 999875

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=100.00  E-value=1.2e-33  Score=236.33  Aligned_cols=239  Identities=15%  Similarity=0.160  Sum_probs=165.7

Q ss_pred             ccccceeeecccCCCCC---eeeccch---hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHH
Q 044568            4 TKLSNFYRSSFNARNSP---WISRVSW---TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLT   77 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~---~i~~~~~---~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~   77 (257)
                      +.++.||+|+.......   +++....   ..+.+.+. .. ......+.|+|++++.+.+......++||||+++|+|.
T Consensus         6 G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~-~e-~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~   83 (268)
T cd05086           6 GWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFL-QQ-GDPYRILQHPNILQCLGQCVEAIPYLLVFEYCELGDLK   83 (268)
T ss_pred             CcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHH-HH-HHHHhccCCcchhheEEEecCCCccEEEEecCCCCcHH
Confidence            46889999975544432   3443321   11111110 00 01233788999999999999999999999999999999


Q ss_pred             HHHhccC--CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC-----Cccc
Q 044568           78 DIIFCSA--ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE-----DFVI  150 (257)
Q Consensus        78 ~~l~~~~--~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~-----~~~~  150 (257)
                      +++....  ...++......++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||++.....     ....
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~---~i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~  160 (268)
T cd05086          84 SYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKH---NFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKEDYIETEDD  160 (268)
T ss_pred             HHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHC---CeeccCCccceEEEcCCccEEecccccccccCcchhhhcccC
Confidence            9997531  23466777889999999999999999   999999999999999999999999998753211     1123


Q ss_pred             ccCCCCccCcccccC-------CCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcC
Q 044568          151 DKRDKGYMAPECYKR-------TPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRG  222 (257)
Q Consensus       151 ~~~~~~~~aPE~~~~-------~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (257)
                      ..++..|+|||++..       ..++.++||||||+++|||++ |..||.......   .....     .......+.++
T Consensus       161 ~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~---~~~~~-----~~~~~~~~~~~  232 (268)
T cd05086         161 KCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSHLSDRE---VLNHV-----IKDQQVKLFKP  232 (268)
T ss_pred             CcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCHHH---HHHHH-----HhhcccccCCC
Confidence            356678999998753       235788999999999999997 566775431111   11110     01111111221


Q ss_pred             CCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          223 TKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       223 ~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      . ......+.+.+++..|| .+|.+|| ++|+++.|
T Consensus       233 ~-~~~~~~~~~~~l~~~c~-~~P~~Rp~~~~i~~~l  266 (268)
T cd05086         233 Q-LELPYSERWYEVLQFCW-LSPEKRATAEEVHRLL  266 (268)
T ss_pred             c-cCCCCcHHHHHHHHHHh-hCcccCCCHHHHHHHh
Confidence            1 11224466788999999 6799999 99999876

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=9.1e-35  Score=250.30  Aligned_cols=226  Identities=16%  Similarity=0.143  Sum_probs=168.1

Q ss_pred             ccccceeeecccC-CCCCeeeccchh---hhHHHHhHhhhccccccc---cCCceeeeceeeeecCceeEEEeecCCCCH
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSWT---ADIEVLSVAMRGSKCTRI---RGGLLLNVPVRAKLTSVSGKIERPVRNGSL   76 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~---~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL   76 (257)
                      +.++.||+++... +..+++|.....   .+.+..........+.+.   .|++++.+...+...+..++||||+++|+|
T Consensus         4 G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~~g~L   83 (330)
T cd05586           4 GTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSGGEL   83 (330)
T ss_pred             CCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCCCChH
Confidence            5789999998654 566777765421   111111110000011122   699999999999999999999999999999


Q ss_pred             HHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC---CcccccC
Q 044568           77 TDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE---DFVIDKR  153 (257)
Q Consensus        77 ~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~---~~~~~~~  153 (257)
                      .+++.  ....+++..+..++.|++.||.|||++   +++||||||+||+++.++.++|+|||++.....   ......|
T Consensus        84 ~~~l~--~~~~~~~~~~~~~~~qil~al~~LH~~---~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~g  158 (330)
T cd05586          84 FWHLQ--KEGRFSEDRAKFYIAELVLALEHLHKY---DIVYRDLKPENILLDATGHIALCDFGLSKANLTDNKTTNTFCG  158 (330)
T ss_pred             HHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeEECCCCCEEEecCCcCcCCCCCCCCccCccC
Confidence            99997  456789999999999999999999999   999999999999999999999999999864321   1234468


Q ss_pred             CCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCC-HHHHH
Q 044568          154 DKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVD-KKNLE  231 (257)
Q Consensus       154 ~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  231 (257)
                      |..|+|||.+.+. .++.++||||+||++|||++|+.||......   ......     ....       ...+ .....
T Consensus       159 t~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~~~~~~---~~~~~i-----~~~~-------~~~~~~~~~~  223 (330)
T cd05586         159 TTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAEDTQ---QMYRNI-----AFGK-------VRFPKNVLSD  223 (330)
T ss_pred             CccccCHHHHcCCCCCCCccceeccccEEEEeccCCCCCCCCCHH---HHHHHH-----HcCC-------CCCCCccCCH
Confidence            8899999998754 4789999999999999999999999754211   111110     0000       0111 12346


Q ss_pred             HHHHHHHHcccCCCCCCC
Q 044568          232 NLVKVGLWCVQDEPALRP  249 (257)
Q Consensus       232 ~l~~l~~~cl~~~p~~RP  249 (257)
                      .+.+++.+||+.||.+||
T Consensus       224 ~~~~li~~~L~~~P~~R~  241 (330)
T cd05586         224 EGRQFVKGLLNRNPQHRL  241 (330)
T ss_pred             HHHHHHHHHcCCCHHHCC
Confidence            778999999999999997

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=9.9e-34  Score=237.29  Aligned_cols=223  Identities=21%  Similarity=0.195  Sum_probs=176.0

Q ss_pred             ccccceeeeccc-CCCCCeeeccch----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +.++.||++... ++..+++|....          .+|++.+         .++.|+|++++.+.+......++|+||++
T Consensus        12 g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l---------~~l~h~~i~~~~~~~~~~~~~~~v~e~~~   82 (274)
T cd06609          12 GSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFL---------SQCRSPYITKYYGSFLKGSKLWIIMEYCG   82 (274)
T ss_pred             CCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHH---------HHcCCCCeeeeeEEEEECCeEEEEEEeeC
Confidence            567899999966 455667776543          2233333         37789999999999999999999999999


Q ss_pred             CCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---cc
Q 044568           73 NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---FV  149 (257)
Q Consensus        73 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~~  149 (257)
                      +++|.+++..   ..+++..+..++.|++.|+.|||++   +++|+|++|+||++++++.++++|||++......   ..
T Consensus        83 ~~~L~~~~~~---~~~~~~~~~~~~~ql~~~l~~lh~~---~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~  156 (274)
T cd06609          83 GGSCLDLLKP---GKLDETYIAFILREVLLGLEYLHEE---GKIHRDIKAANILLSEEGDVKLADFGVSGQLTSTMSKRN  156 (274)
T ss_pred             CCcHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEEcccccceeecccccccc
Confidence            9999999963   3789999999999999999999999   9999999999999999999999999998765433   23


Q ss_pred             cccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHH-
Q 044568          150 IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKK-  228 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  228 (257)
                      ...++..|+|||.+.+..++.++|+||||+++|++++|+.||.......   ...          .......+ ..+.. 
T Consensus       157 ~~~~~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~~~~---~~~----------~~~~~~~~-~~~~~~  222 (274)
T cd06609         157 TFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLHPMR---VLF----------LIPKNNPP-SLEGNK  222 (274)
T ss_pred             cccCCccccChhhhccCCCCchhhHHHHHHHHHHHHhCCCCcccCchHH---HHH----------HhhhcCCC-CCcccc
Confidence            3456777999999998889999999999999999999999997542110   000          00000111 11111 


Q ss_pred             HHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          229 NLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       229 ~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .+..+.+++.+||+.+|++|| ++++++
T Consensus       223 ~~~~~~~~l~~~l~~~p~~Rpt~~~il~  250 (274)
T cd06609         223 FSKPFKDFVSLCLNKDPKERPSAKELLK  250 (274)
T ss_pred             cCHHHHHHHHHHhhCChhhCcCHHHHhh
Confidence            456788999999999999999 999975

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=100.00  E-value=1.6e-33  Score=235.22  Aligned_cols=237  Identities=17%  Similarity=0.195  Sum_probs=175.6

Q ss_pred             ccccceeeecccC--CCCCeeeccchh------------hhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEe
Q 044568            4 TKLSNFYRSSFNA--RNSPWISRVSWT------------ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIER   69 (257)
Q Consensus         4 ~~~~~~y~~~~~~--~~~~~i~~~~~~------------~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E   69 (257)
                      +.++.||++....  +..+++|.....            ..++.+. .........+.|+|++++.+.+...+..++|||
T Consensus        11 G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e   89 (269)
T cd08528          11 GAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIV-SEVTIIKEQLRHPNIVRYYKTFLENDRLYIVMD   89 (269)
T ss_pred             CCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHH-HHHHHHhhcCCCCCeeeEEeeEccCCeEEEEEe
Confidence            4588999999876  445566654311            0111000 011101124789999999999999999999999


Q ss_pred             ecCCCCHHHHHhcc--CCCCCCHHHHHHHHHHHHHHHHHHhh-CCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC
Q 044568           70 PVRNGSLTDIIFCS--AERNPYWNQRVRIALDVAKGILYLHD-ECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE  146 (257)
Q Consensus        70 ~~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~  146 (257)
                      |+++++|.+++...  ....+++..+..++.|++.|+.|||+ .   +++|+||+|+||+++.++.++|+|||.+.....
T Consensus        90 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~---~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~  166 (269)
T cd08528          90 LIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEK---RIVHRDLTPNNIMLGEDDKVTITDFGLAKQKQP  166 (269)
T ss_pred             cCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccCC---ceeecCCCHHHEEECCCCcEEEecccceeeccc
Confidence            99999999988531  44568999999999999999999996 6   899999999999999999999999999875433


Q ss_pred             C--cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCC
Q 044568          147 D--FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTK  224 (257)
Q Consensus       147 ~--~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (257)
                      .  .....++..|++||.+.+..++.++|+||||+++||+++|+.||.......   .....     ..    ....+ .
T Consensus       167 ~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~~~~~~---~~~~~-----~~----~~~~~-~  233 (269)
T cd08528         167 ESKLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYSTNMLS---LATKI-----VE----AVYEP-L  233 (269)
T ss_pred             ccccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCCcccccCHHH---HHHHH-----hh----ccCCc-C
Confidence            2  234456778999999998889999999999999999999999996441111   01000     00    00010 1


Q ss_pred             CCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          225 VDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       225 ~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ........+.+++.+||+.||++|| +.|+.++|
T Consensus       234 ~~~~~~~~l~~li~~cl~~~p~~Rp~~~e~~~~~  267 (269)
T cd08528         234 PEGMYSEDVTDVITSCLTPDAEARPDIIQVSAMI  267 (269)
T ss_pred             CcccCCHHHHHHHHHHCCCCCccCCCHHHHHHHh
Confidence            1113346789999999999999999 99998875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=100.00  E-value=4.7e-34  Score=236.84  Aligned_cols=238  Identities=22%  Similarity=0.282  Sum_probs=179.5

Q ss_pred             ccccceeeecccCCC-CCeeeccchhhhHHHHh---HhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHH
Q 044568            4 TKLSNFYRSSFNARN-SPWISRVSWTADIEVLS---VAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDI   79 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~-~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~   79 (257)
                      +.++.||+++....+ .+++|.....+.-+...   ..... .+.+++|+|++++.......+..++||||+++++|.++
T Consensus        10 G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~-~~~~l~~~~i~~~~~~~~~~~~~~~v~~~~~~~~L~~~   88 (260)
T PF00069_consen   10 GGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIK-ILRRLRHPNIVQILDVFQDDNYLYIVMEYCPGGSLQDY   88 (260)
T ss_dssp             ESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHH-HHHHHTBTTBCHEEEEEEESSEEEEEEEEETTEBHHHH
T ss_pred             CCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhh-cccccccccccccccccccccccccccccccccccccc
Confidence            568899999988777 56777655322111111   00111 33377899999999999999999999999999999999


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccC---CCCcccccCCCC
Q 044568           80 IFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLP---NEDFVIDKRDKG  156 (257)
Q Consensus        80 l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~---~~~~~~~~~~~~  156 (257)
                      +.  ....+++.++..++.|++.||.+||++   +++|+||+|+||+++.++.++|+|||.+...   ........++..
T Consensus        89 l~--~~~~~~~~~~~~~~~qi~~~L~~Lh~~---~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~  163 (260)
T PF00069_consen   89 LQ--KNKPLSEEEILKIAYQILEALAYLHSK---GIVHRDIKPENILLDENGEVKLIDFGSSVKLSENNENFNPFVGTPE  163 (260)
T ss_dssp             HH--HHSSBBHHHHHHHHHHHHHHHHHHHHT---TEEESSBSGGGEEESTTSEEEESSGTTTEESTSTTSEBSSSSSSGG
T ss_pred             cc--ccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccccccccccccc
Confidence            97  456789999999999999999999999   9999999999999999999999999998642   233345567788


Q ss_pred             ccCccccc-CCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHH
Q 044568          157 YMAPECYK-RTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVK  235 (257)
Q Consensus       157 ~~aPE~~~-~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  235 (257)
                      |.|||.+. +..++.++|+||+|+++|+|++|..||................     ..   .............+.+.+
T Consensus       164 y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~~~~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~l~~  235 (260)
T PF00069_consen  164 YMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEESNSDDQLEIIEKIL-----KR---PLPSSSQQSREKSEELRD  235 (260)
T ss_dssp             GSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTSSHHHHHHHHHHHH-----HT---HHHHHTTSHTTSHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccchhhhhhhhhcc-----cc---cccccccccchhHHHHHH
Confidence            99999998 7778999999999999999999999997541111111111100     00   000000111112378999


Q ss_pred             HHHHcccCCCCCCC-hHHHHH
Q 044568          236 VGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       236 l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ++.+||+.||++|| +.++++
T Consensus       236 li~~~l~~~p~~R~~~~~l~~  256 (260)
T PF00069_consen  236 LIKKMLSKDPEQRPSAEELLK  256 (260)
T ss_dssp             HHHHHSSSSGGGSTTHHHHHT
T ss_pred             HHHHHccCChhHCcCHHHHhc
Confidence            99999999999999 999986

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=100.00  E-value=3.5e-34  Score=243.18  Aligned_cols=234  Identities=15%  Similarity=0.104  Sum_probs=176.8

Q ss_pred             ccccceeeecc-cCCCCCeeeccchhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHHHhc
Q 044568            4 TKLSNFYRSSF-NARNSPWISRVSWTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFC   82 (257)
Q Consensus         4 ~~~~~~y~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~   82 (257)
                      +.++.||++.. .++..+++|........+.-.....-..+..+.|+|++++.+.+...+..++||||+++++|.+++.+
T Consensus        30 g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~  109 (297)
T cd06656          30 GASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTE  109 (297)
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEeecccCCCCHHHHHHh
Confidence            45789999985 56777788776532111111100011133378899999999999999999999999999999999953


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc---ccccCCCCccC
Q 044568           83 SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF---VIDKRDKGYMA  159 (257)
Q Consensus        83 ~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~---~~~~~~~~~~a  159 (257)
                         ..+++.++..++.|++.||.|||+.   +++|+||+|+||+++.++.++++|||.+.......   ....+++.|++
T Consensus       110 ---~~~~~~~~~~~~~~l~~~L~~LH~~---~i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~a  183 (297)
T cd06656         110 ---TCMDEGQIAAVCRECLQALDFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMA  183 (297)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEECcCccceEccCCccCcCcccCCccccC
Confidence               4588999999999999999999999   99999999999999999999999999876533221   23456778999


Q ss_pred             cccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHH
Q 044568          160 PECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLW  239 (257)
Q Consensus       160 PE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  239 (257)
                      ||.+.+..++.++|+||||+++|++++|..||..........       ..     ..........+......+.+++.+
T Consensus       184 PE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~~~~~~~~-------~~-----~~~~~~~~~~~~~~~~~~~~li~~  251 (297)
T cd06656         184 PEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALY-------LI-----ATNGTPELQNPERLSAVFRDFLNR  251 (297)
T ss_pred             HHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcchhee-------ee-----ccCCCCCCCCccccCHHHHHHHHH
Confidence            999988888999999999999999999999997542211000       00     000000011233345668899999


Q ss_pred             cccCCCCCCC-hHHHHH
Q 044568          240 CVQDEPALRP-MKCAVM  255 (257)
Q Consensus       240 cl~~~p~~RP-~~ei~~  255 (257)
                      ||+.+|.+|| +.++++
T Consensus       252 ~l~~~p~~Rps~~~il~  268 (297)
T cd06656         252 CLEMDVDRRGSAKELLQ  268 (297)
T ss_pred             HccCChhhCcCHHHHhc
Confidence            9999999999 999975

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=100.00  E-value=8.6e-34  Score=242.46  Aligned_cols=178  Identities=19%  Similarity=0.201  Sum_probs=142.0

Q ss_pred             ccccceeeecccC---CCCCeeeccc-------hhhhHHHHhHhhhccccccccCCceeeeceeeee--cCceeEEEeec
Q 044568            4 TKLSNFYRSSFNA---RNSPWISRVS-------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL--TSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~~---~~~~~i~~~~-------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~--~~~~~lV~E~~   71 (257)
                      +.++.||+++..+   +..+++|...       +.+|++.+.         ++.|+|++++.+.+..  ....++||||+
T Consensus        12 G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~~~~~~~~E~~~l~---------~l~h~niv~~~~~~~~~~~~~~~lv~e~~   82 (317)
T cd07867          12 GTYGHVYKAKRKDGKDEKEYALKQIEGTGISMSACREIALLR---------ELKHPNVIALQKVFLSHSDRKVWLLFDYA   82 (317)
T ss_pred             CCCeeEEEEEecCCCccceEEEEEecCCCCcHHHHHHHHHHH---------hCCCCCeeeEEEEEeccCCCeEEEEEeee
Confidence            5789999998654   3456666543       345555555         8889999999998753  55778999999


Q ss_pred             CCCCHHHHHhcc-------CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceee----CCCCceEEeeecc
Q 044568           72 RNGSLTDIIFCS-------AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM----DEFWTAKILDFGL  140 (257)
Q Consensus        72 ~~gsL~~~l~~~-------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~----~~~~~~kl~dfg~  140 (257)
                      + ++|.+++...       ....+++..+..++.|++.||.|||++   +++||||||+||++    +.++.+||+|||+
T Consensus        83 ~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~  158 (317)
T cd07867          83 E-HDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGRVKIADMGF  158 (317)
T ss_pred             C-CcHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhC---CEEcCCCCHHHEEEccCCCCCCcEEEeeccc
Confidence            7 4888877421       223588899999999999999999999   99999999999999    4567899999999


Q ss_pred             cccCCCCc------ccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcC
Q 044568          141 AKLPNEDF------VIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEID  194 (257)
Q Consensus       141 ~~~~~~~~------~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~  194 (257)
                      ++......      ....+|..|+|||.+.+. .++.++||||||+++|||++|+.||...
T Consensus       159 a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f~~~  219 (317)
T cd07867         159 ARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCR  219 (317)
T ss_pred             eeccCCCcccccccCcceecccccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCcccc
Confidence            87543321      234567889999998764 5789999999999999999999999754

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=100.00  E-value=9.5e-34  Score=249.69  Aligned_cols=229  Identities=18%  Similarity=0.207  Sum_probs=173.1

Q ss_pred             ccccceeeeccc------CCCCCeeeccch----------hhhHHHHhHhhhcccccccc-CCceeeeceeeeecCceeE
Q 044568            4 TKLSNFYRSSFN------ARNSPWISRVSW----------TADIEVLSVAMRGSKCTRIR-GGLLLNVPVRAKLTSVSGK   66 (257)
Q Consensus         4 ~~~~~~y~~~~~------~~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~-h~~i~~~~~~~~~~~~~~l   66 (257)
                      +.++.||+++..      .+..+++|...-          .+|++.+.         ++. |+|++++.+.+...+..++
T Consensus        48 G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~---------~l~~H~niv~~~~~~~~~~~~~i  118 (401)
T cd05107          48 GAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMS---------HLGPHLNIVNLLGACTKGGPIYI  118 (401)
T ss_pred             CCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHH---------hcCCCCCeEEEEEEEccCCCcEE
Confidence            568999999853      234567776542          22333333         665 9999999999999999999


Q ss_pred             EEeecCCCCHHHHHhccC--------------------------------------------------------------
Q 044568           67 IERPVRNGSLTDIIFCSA--------------------------------------------------------------   84 (257)
Q Consensus        67 V~E~~~~gsL~~~l~~~~--------------------------------------------------------------   84 (257)
                      ||||+++|+|.++++...                                                              
T Consensus       119 v~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (401)
T cd05107         119 ITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESADYVPMQDMKGT  198 (401)
T ss_pred             EEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCccccCccchhcchhh
Confidence            999999999999996421                                                              


Q ss_pred             ----------------------------------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCC
Q 044568           85 ----------------------------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF  130 (257)
Q Consensus        85 ----------------------------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~  130 (257)
                                                        ...+++.+...++.|++.||.|||++   +++|+||+|+||+++++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrdlkp~NiLl~~~  275 (401)
T cd05107         199 VKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLASK---NCVHRDLAARNVLICEG  275 (401)
T ss_pred             hhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHhcC---CcCcccCCcceEEEeCC
Confidence                                              12367778889999999999999999   99999999999999999


Q ss_pred             CceEEeeecccccCCCCc-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHH
Q 044568          131 WTAKILDFGLAKLPNEDF-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILT  204 (257)
Q Consensus       131 ~~~kl~dfg~~~~~~~~~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~  204 (257)
                      +.++|+|||+++......     ....++..|+|||.+.+..++.++|+||||+++|||++ |..||........   ..
T Consensus       276 ~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~~~~~~---~~  352 (401)
T cd05107         276 KLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQ---FY  352 (401)
T ss_pred             CEEEEEecCcceecccccccccCCCcCCCCceeChHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCCCchHH---HH
Confidence            999999999987532211     12244667999999988889999999999999999998 8899865421110   00


Q ss_pred             HHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          205 NWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ..    ... .    .. ...+......+.+++.+||+.+|.+|| ++||++.|
T Consensus       353 ~~----~~~-~----~~-~~~p~~~~~~l~~li~~cl~~~P~~RPs~~ell~~L  396 (401)
T cd05107         353 NA----IKR-G----YR-MAKPAHASDEIYEIMQKCWEEKFEIRPDFSQLVHLV  396 (401)
T ss_pred             HH----HHc-C----CC-CCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence            00    000 0    00 012333457899999999999999999 99998865

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=100.00  E-value=1.6e-33  Score=235.59  Aligned_cols=226  Identities=14%  Similarity=0.171  Sum_probs=171.8

Q ss_pred             ccccceeeecccCC----CCCeeeccch----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEe
Q 044568            4 TKLSNFYRSSFNAR----NSPWISRVSW----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIER   69 (257)
Q Consensus         4 ~~~~~~y~~~~~~~----~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E   69 (257)
                      +.++.||+|...+.    ..+++|....          .+|++.         +.++.|+|++++.+.+.. +..++|||
T Consensus        17 g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~---------l~~~~h~~i~~~~~~~~~-~~~~lv~e   86 (270)
T cd05056          17 GQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYI---------MRQFDHPHIVKLIGVITE-NPVWIVME   86 (270)
T ss_pred             ccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHH---------HHhCCCCchhceeEEEcC-CCcEEEEE
Confidence            46789999986544    3456665442          223333         337889999999987764 56789999


Q ss_pred             ecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-
Q 044568           70 PVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-  148 (257)
Q Consensus        70 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-  148 (257)
                      |+++|+|.+++.. ....+++.++..++.|++.||.|||++   +++|+||+|+||+++.++.++++|||++....... 
T Consensus        87 ~~~~~~L~~~l~~-~~~~~~~~~~~~~~~~l~~~l~~lH~~---~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~  162 (270)
T cd05056          87 LAPLGELRSYLQV-NKYSLDLASLILYSYQLSTALAYLESK---RFVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDESY  162 (270)
T ss_pred             cCCCCcHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccccChheEEEecCCCeEEccCceeeecccccc
Confidence            9999999999975 345689999999999999999999999   99999999999999999999999999887543221 


Q ss_pred             ---ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCC
Q 044568          149 ---VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTK  224 (257)
Q Consensus       149 ---~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (257)
                         ....++..|+|||.+....++.++|+||||+++||+++ |..||........   ....          .. .....
T Consensus       163 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~~---~~~~----------~~-~~~~~  228 (270)
T cd05056         163 YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGVKNNDV---IGRI----------EN-GERLP  228 (270)
T ss_pred             eecCCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCCHHHH---HHHH----------Hc-CCcCC
Confidence               11122346999999988888999999999999999986 9999975422110   1000          00 00112


Q ss_pred             CCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          225 VDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       225 ~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      .+...+..+.+++.+||..+|.+|| +.++++.|
T Consensus       229 ~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~~~~l  262 (270)
T cd05056         229 MPPNCPPTLYSLMTKCWAYDPSKRPRFTELKAQL  262 (270)
T ss_pred             CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            2344567899999999999999999 99998764

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>PTZ00284 protein kinase; Provisional

Probab=100.00  E-value=8.2e-34  Score=255.27  Aligned_cols=242  Identities=14%  Similarity=0.127  Sum_probs=170.1

Q ss_pred             ccccceeeecccC-CCCCeeeccc--------hhhhHHHHhHhhhccccccccCCceeeeceeeeec-CceeEEEeecCC
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS--------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT-SVSGKIERPVRN   73 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~-~~~~lV~E~~~~   73 (257)
                      +.++.||++.... +..+++|.+.        ...|++++......   ....|.+++++..++... .+.++|||++ +
T Consensus       140 G~fg~V~~a~~~~~~~~vAvK~i~~~~~~~~~~~~e~~~l~~l~~~---~~~~~~~i~~i~~~~~~~~~~~~iv~~~~-g  215 (467)
T PTZ00284        140 GTFGKVVEAWDRKRKEYCAVKIVRNVPKYTRDAKIEIQFMEKVRQA---DPADRFPLMKIQRYFQNETGHMCIVMPKY-G  215 (467)
T ss_pred             ccCEEEEEEEEcCCCeEEEEEEEecchhhHHHHHHHHHHHHHHhhc---CcccCcceeeeEEEEEcCCceEEEEEecc-C
Confidence            5688999998654 4557788653        23344444311111   123355677777777654 5789999988 6


Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhh-CCCCCeeeccCCCCceeeCCCC----------------ceEEe
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHD-ECEPPILHCDIKPQNILMDEFW----------------TAKIL  136 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~dl~~~nil~~~~~----------------~~kl~  136 (257)
                      ++|.+++.  ....+++..+..++.|++.||.|||+ .   +|+||||||+|||++.++                .+||+
T Consensus       216 ~~l~~~l~--~~~~l~~~~~~~i~~qi~~aL~yLH~~~---gIiHrDlKP~NILl~~~~~~~~~~~~~~~~~~~~~vkl~  290 (467)
T PTZ00284        216 PCLLDWIM--KHGPFSHRHLAQIIFQTGVALDYFHTEL---HLMHTDLKPENILMETSDTVVDPVTNRALPPDPCRVRIC  290 (467)
T ss_pred             CCHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHhcC---CeecCCCCHHHEEEecCCcccccccccccCCCCceEEEC
Confidence            79999987  44679999999999999999999997 6   999999999999998655                49999


Q ss_pred             eecccccCCCCcccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHH--------HHH
Q 044568          137 DFGLAKLPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTN--------WVY  208 (257)
Q Consensus       137 dfg~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~--------~~~  208 (257)
                      |||.+...........+|+.|+|||++.+..++.++|||||||++|||++|+.||...........+..        |..
T Consensus       291 DfG~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~~~g~~p~~~~~  370 (467)
T PTZ00284        291 DLGGCCDERHSRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYDTHDNLEHLHLMEKTLGRLPSEWAG  370 (467)
T ss_pred             CCCccccCccccccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHcCCCCHHHHh
Confidence            999876544444566789999999999999999999999999999999999999976532111111100        100


Q ss_pred             Hhhhhhhhhhhhc-------------------CCCC-CHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          209 KCFINRELNKLVR-------------------GTKV-DKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       209 ~~~~~~~~~~~~~-------------------~~~~-~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ... ......+..                   .... .......+.+|+.+||++||++|| ++|+++
T Consensus       371 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~ta~e~L~  437 (467)
T PTZ00284        371 RCG-TEEARLLYNSAGQLRPCTDPKHLARIARARPVREVIRDDLLCDLIYGLLHYDRQKRLNARQMTT  437 (467)
T ss_pred             hcc-chhHHHHhhhcccccccCCHHHHHhhhcccchhhhhchHHHHHHHHHhCCcChhhCCCHHHHhc
Confidence            000 000000000                   0000 001135678999999999999999 999975

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-34  Score=252.14  Aligned_cols=228  Identities=19%  Similarity=0.261  Sum_probs=180.6

Q ss_pred             cccceeeecccCCCCCeeec----------cchhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCC
Q 044568            5 KLSNFYRSSFNARNSPWISR----------VSWTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNG   74 (257)
Q Consensus         5 ~~~~~y~~~~~~~~~~~i~~----------~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~g   74 (257)
                      +|++|-.-.......+++|.          .+|.+|++.+.         +++||||+.+.+.|..++..++|+|||++|
T Consensus       550 qFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLs---------qLkhPNIveLvGVC~~DePicmI~EYmEnG  620 (807)
T KOG1094|consen  550 QFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILS---------RLKHPNIVELLGVCVQDDPLCMITEYMENG  620 (807)
T ss_pred             ccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHh---------ccCCCCeeEEEeeeecCCchHHHHHHHhcC
Confidence            44444444444445555553          45788888888         889999999999999999999999999999


Q ss_pred             CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccC-CCCcccc--
Q 044568           75 SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLP-NEDFVID--  151 (257)
Q Consensus        75 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~-~~~~~~~--  151 (257)
                      +|.+++..++..+........++.||++|++||.+-   +++|||+.+.|+|+++++++|++|||+++.. ..+....  
T Consensus       621 DLnqFl~aheapt~~t~~~vsi~tqiasgmaYLes~---nfVHrd~a~rNcLv~~e~~iKiadfgmsR~lysg~yy~vqg  697 (807)
T KOG1094|consen  621 DLNQFLSAHELPTAETAPGVSICTQIASGMAYLESL---NFVHRDLATRNCLVDGEFTIKIADFGMSRNLYSGDYYRVQG  697 (807)
T ss_pred             cHHHHHHhccCcccccchhHHHHHHHHHHHHHHHhh---chhhccccccceeecCcccEEecCcccccccccCCceeeec
Confidence            999999876555666677788999999999999999   9999999999999999999999999999843 2222222  


Q ss_pred             --cCCCCccCcccccCCCCCccccchhHHHHHHHHHh--cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC----
Q 044568          152 --KRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC--CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT----  223 (257)
Q Consensus       152 --~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~--g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  223 (257)
                        ....+|+|+|.+..++++.+||+|+||+++||+++  ...||....   ++...          .+...+++..    
T Consensus       698 r~vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~~C~e~Py~~lt---~e~vv----------en~~~~~~~~~~~~  764 (807)
T KOG1094|consen  698 RAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQLT---DEQVV----------ENAGEFFRDQGRQV  764 (807)
T ss_pred             ceeeeeeehhHHHHHhccccchhhhhhhHHHHHHHHHHHhhCchhhhh---HHHHH----------HhhhhhcCCCCcce
Confidence              23457999999999999999999999999999986  788886431   11111          2223333322    


Q ss_pred             --CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          224 --KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       224 --~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                        ..|.-++..+.+++.+||..|-++|| ++++...|
T Consensus       765 ~l~~P~~cp~~lyelml~Cw~~es~~RPsFe~lh~~l  801 (807)
T KOG1094|consen  765 VLSRPPACPQGLYELMLRCWRRESEQRPSFEQLHLFL  801 (807)
T ss_pred             eccCCCcCcHHHHHHHHHHhchhhhcCCCHHHHHHHH
Confidence              45677888999999999999999999 99997653

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=100.00  E-value=1.2e-33  Score=247.27  Aligned_cols=235  Identities=12%  Similarity=0.075  Sum_probs=169.1

Q ss_pred             ccccceeeecccCCC-CCeeeccchhh---hHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHH
Q 044568            4 TKLSNFYRSSFNARN-SPWISRVSWTA---DIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDI   79 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~-~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~   79 (257)
                      +.++.||+++...+. .+++|......   ......+.........+.|+|++++.+.+...+..++||||+++|+|.++
T Consensus        54 G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~lv~Ey~~gg~L~~~  133 (371)
T cd05622          54 GAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNL  133 (371)
T ss_pred             cCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEEcCCCCCcHHHH
Confidence            567899999977554 44566543211   00000000111123377899999999999999999999999999999999


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC----cccccCCC
Q 044568           80 IFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED----FVIDKRDK  155 (257)
Q Consensus        80 l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~----~~~~~~~~  155 (257)
                      +..   ..++...+..++.|++.||.|||++   +|+||||||+||+++.++.+||+|||++......    .....||+
T Consensus       134 ~~~---~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDLkp~NIll~~~~~ikL~DfG~a~~~~~~~~~~~~~~~gt~  207 (371)
T cd05622         134 MSN---YDVPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTP  207 (371)
T ss_pred             HHh---cCCCHHHHHHHHHHHHHHHHHHHHC---CEEeCCCCHHHEEECCCCCEEEEeCCceeEcCcCCcccccCcccCc
Confidence            953   4588899999999999999999999   9999999999999999999999999998754322    13456889


Q ss_pred             CccCcccccCC----CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHH
Q 044568          156 GYMAPECYKRT----PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLE  231 (257)
Q Consensus       156 ~~~aPE~~~~~----~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (257)
                      .|+|||++...    .++.++|||||||++|||++|..||.......   ....+.    ....   ... .........
T Consensus       208 ~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~---~~~~i~----~~~~---~~~-~~~~~~~s~  276 (371)
T cd05622         208 DYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVG---TYSKIM----NHKN---SLT-FPDDNDISK  276 (371)
T ss_pred             cccCHHHHhccCCCccCCCccceeehhHHHHHHHhCCCCCCCCCHHH---HHHHHH----cCCC---ccc-CCCcCCCCH
Confidence            99999998753    27889999999999999999999997542111   111100    0000   000 011223456


Q ss_pred             HHHHHHHHcccCCCCC--CC-hHHHHH
Q 044568          232 NLVKVGLWCVQDEPAL--RP-MKCAVM  255 (257)
Q Consensus       232 ~l~~l~~~cl~~~p~~--RP-~~ei~~  255 (257)
                      .+.+++..|+..++.+  || ++|+++
T Consensus       277 ~~~~li~~~L~~~~~r~~r~~~~ei~~  303 (371)
T cd05622         277 EAKNLICAFLTDREVRLGRNGVEEIKR  303 (371)
T ss_pred             HHHHHHHHHcCChhhhcCCCCHHHHhc
Confidence            7888999999844433  78 888865

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=100.00  E-value=8.9e-34  Score=265.58  Aligned_cols=227  Identities=16%  Similarity=0.179  Sum_probs=173.9

Q ss_pred             ccccceeeecccC-CCCCeeeccc------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||++.... ++.+++|...            +.+|++.+.         ++.|+|++++.+.+...+..++||||
T Consensus        13 GgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs---------~L~HPNIVkl~~v~~d~~~lyLVMEY   83 (932)
T PRK13184         13 GGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAA---------DLIHPGIVPVYSICSDGDPVYYTMPY   83 (932)
T ss_pred             CCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHH---------hCCCcCcCeEEEEEeeCCEEEEEEEc
Confidence            5689999998654 5667887653            233444444         88899999999999999999999999


Q ss_pred             cCCCCHHHHHhcc---------CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeeccc
Q 044568           71 VRNGSLTDIIFCS---------AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA  141 (257)
Q Consensus        71 ~~~gsL~~~l~~~---------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~  141 (257)
                      ++||+|.+++...         ....+++..+..++.|++.||.|||++   +++||||||+||+++.++.++++|||++
T Consensus        84 ~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~---GIIHRDLKPeNILLd~dg~vKLiDFGLA  160 (932)
T PRK13184         84 IEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSK---GVLHRDLKPDNILLGLFGEVVILDWGAA  160 (932)
T ss_pred             CCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHC---CccccCCchheEEEcCCCCEEEEecCcc
Confidence            9999999998631         123456677889999999999999999   9999999999999999999999999998


Q ss_pred             ccCCCC---------------------cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhh
Q 044568          142 KLPNED---------------------FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEE  200 (257)
Q Consensus       142 ~~~~~~---------------------~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~  200 (257)
                      ......                     .....||+.|+|||.+.+..++.++|||||||++|||++|+.||.......  
T Consensus       161 k~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~PF~~~~~~k--  238 (932)
T PRK13184        161 IFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPYRRKKGRK--  238 (932)
T ss_pred             eecccccccccccccccccccccccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCCCCCcchhh--
Confidence            754110                     012357889999999998889999999999999999999999997532111  


Q ss_pred             HHHHHHHHHhhhhhhhhhhhcCC--CCCHHHHHHHHHHHHHcccCCCCCCC--hHHHHHh
Q 044568          201 IILTNWVYKCFINRELNKLVRGT--KVDKKNLENLVKVGLWCVQDEPALRP--MKCAVMM  256 (257)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~cl~~~p~~RP--~~ei~~~  256 (257)
                      ....         .   ....+.  ....+.+..+.+++.+||+.||++||  ++++.+.
T Consensus       239 i~~~---------~---~i~~P~~~~p~~~iP~~L~~LI~rcL~~DP~kR~ss~eeLl~~  286 (932)
T PRK13184        239 ISYR---------D---VILSPIEVAPYREIPPFLSQIAMKALAVDPAERYSSVQELKQD  286 (932)
T ss_pred             hhhh---------h---hccChhhccccccCCHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence            0000         0   001110  11123456788999999999999998  6666543

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=1.8e-33  Score=243.49  Aligned_cols=236  Identities=14%  Similarity=0.172  Sum_probs=171.6

Q ss_pred             ccccceeeeccc-CCCCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeec------Ccee
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT------SVSG   65 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~------~~~~   65 (257)
                      +.++.||++... ++..+++|...-           .+|++.+.         ++.|+|++++.+.+...      ...+
T Consensus        26 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~~~~~~~~~~~~~   96 (343)
T cd07878          26 GAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLK---------HMKHENVIGLLDVFTPATSIENFNEVY   96 (343)
T ss_pred             CCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHH---------hcCCCchhhhhhhhcccccccccCcEE
Confidence            568899999854 555677776541           22333333         88999999998876532      4578


Q ss_pred             EEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC
Q 044568           66 KIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN  145 (257)
Q Consensus        66 lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~  145 (257)
                      +++|++ +++|.+++.   ...+++..+..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++....
T Consensus        97 ~~~~~~-~~~l~~~~~---~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~  169 (343)
T cd07878          97 LVTNLM-GADLNNIVK---CQKLSDEHVQFLIYQLLRGLKYIHSA---GIIHRDLKPSNVAVNEDCELRILDFGLARQAD  169 (343)
T ss_pred             EEeecC-CCCHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHC---CeecccCChhhEEECCCCCEEEcCCccceecC
Confidence            999998 679998884   45699999999999999999999999   99999999999999999999999999988766


Q ss_pred             CCcccccCCCCccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHH-------HHhhhhhhhh
Q 044568          146 EDFVIDKRDKGYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWV-------YKCFINRELN  217 (257)
Q Consensus       146 ~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~-------~~~~~~~~~~  217 (257)
                      .......++..|+|||.+.+ ..++.++|||||||++|+|++|+.||................       ..........
T Consensus       170 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (343)
T cd07878         170 DEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALFPGNDYIDQLKRIMEVVGTPSPEVLKKISSEHAR  249 (343)
T ss_pred             CCcCCccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhcchhhHH
Confidence            55556678889999999876 468899999999999999999999997542111100000000       0000000000


Q ss_pred             hhhcCC-CCC--------HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          218 KLVRGT-KVD--------KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       218 ~~~~~~-~~~--------~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ...... ..+        ....+.+.+++.+||+.||.+|| +.|+++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dp~~R~s~~ell~  297 (343)
T cd07878         250 KYIQSLPHMPQQDLKKIFRGANPLAIDLLEKMLVLDSDKRISASEALA  297 (343)
T ss_pred             HHhhccccccchhHHHhccCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            111100 000        11234578999999999999999 999975

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=100.00  E-value=2.7e-33  Score=231.84  Aligned_cols=236  Identities=20%  Similarity=0.254  Sum_probs=176.9

Q ss_pred             cccccceeeecccCC-----CCCeeeccchhh---hHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCC
Q 044568            3 CTKLSNFYRSSFNAR-----NSPWISRVSWTA---DIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNG   74 (257)
Q Consensus         3 ~~~~~~~y~~~~~~~-----~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~g   74 (257)
                      .+.++.||+++....     ..+++|......   ..+.+... . ..+..+.|+|++++.+.+...+..+++|||++++
T Consensus         9 ~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e-~-~~l~~l~~~~i~~~~~~~~~~~~~~~i~e~~~~~   86 (258)
T smart00219        9 EGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLRE-A-RIMRKLDHPNIVKLLGVCTEEEPLMIVMEYMEGG   86 (258)
T ss_pred             cCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHH-H-HHHHhcCCCchheEEEEEcCCCeeEEEEeccCCC
Confidence            367899999998763     445666554321   11111100 0 1233778999999999999999999999999999


Q ss_pred             CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcc----c
Q 044568           75 SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFV----I  150 (257)
Q Consensus        75 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~----~  150 (257)
                      +|.+++.......+++.++..++.|++.|+.+||++   +++|+|++|+||+++.++.++++|||.+........    .
T Consensus        87 ~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~---~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~  163 (258)
T smart00219       87 DLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESK---NFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYKKKG  163 (258)
T ss_pred             CHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcC---CeeecccccceEEEccCCeEEEcccCCceeccccccccccc
Confidence            999999753333399999999999999999999999   999999999999999999999999999875433211    1


Q ss_pred             ccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHH
Q 044568          151 DKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKN  229 (257)
Q Consensus       151 ~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (257)
                      ..++..|++||.+.+..++.++|+||+|+++|++++ |..||.....   .......          ... .....+...
T Consensus       164 ~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~~~~---~~~~~~~----------~~~-~~~~~~~~~  229 (258)
T smart00219      164 GKLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPGMSN---EEVLEYL----------KKG-YRLPKPENC  229 (258)
T ss_pred             CCCcccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCCH---HHHHHHH----------hcC-CCCCCCCcC
Confidence            235678999999988888999999999999999998 7888864311   1001000          000 001222335


Q ss_pred             HHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          230 LENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       230 ~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      +..+.+++.+||+.+|++|| +.|+++.|
T Consensus       230 ~~~~~~~i~~~l~~~p~~Rpt~~~ll~~l  258 (258)
T smart00219      230 PPEIYKLMLQCWAEDPEDRPTFSELVEIL  258 (258)
T ss_pred             CHHHHHHHHHHCcCChhhCcCHHHHHhhC
Confidence            67799999999999999999 99999876

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=100.00  E-value=1.6e-33  Score=233.45  Aligned_cols=233  Identities=19%  Similarity=0.174  Sum_probs=177.4

Q ss_pred             cccccceeeeccc-CCCCCeeeccchhh-------hHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCC
Q 044568            3 CTKLSNFYRSSFN-ARNSPWISRVSWTA-------DIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNG   74 (257)
Q Consensus         3 ~~~~~~~y~~~~~-~~~~~~i~~~~~~~-------~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~g   74 (257)
                      .+.++.||+|... +++.+++|......       ..+.+....  ..+.++.|+|++++.+.+...+..++|+||++++
T Consensus        10 ~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~--~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~   87 (258)
T cd06632          10 SGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEI--ALLSKLQHPNIVQYLGTEREEDNLYIFLELVPGG   87 (258)
T ss_pred             ecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHH--HHHHhcCCCCchheeeeEecCCeEEEEEEecCCC
Confidence            3567899999977 66777777543211       111111000  1233888999999999999999999999999999


Q ss_pred             CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC--ccccc
Q 044568           75 SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED--FVIDK  152 (257)
Q Consensus        75 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~--~~~~~  152 (257)
                      +|.+++..  ...+++..+..++.|++.|+.|||+.   +++|+||+|+||+++.++.+||+|||.+......  .....
T Consensus        88 ~L~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~~~~~~~~~  162 (258)
T cd06632          88 SLAKLLKK--YGSFPEPVIRLYTRQILLGLEYLHDR---NTVHRDIKGANILVDTNGVVKLADFGMAKQVVEFSFAKSFK  162 (258)
T ss_pred             cHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEccCccceeccccccccccC
Confidence            99999974  35688999999999999999999999   9999999999999999999999999987754322  23445


Q ss_pred             CCCCccCcccccCCC-CCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHH
Q 044568          153 RDKGYMAPECYKRTP-ISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLE  231 (257)
Q Consensus       153 ~~~~~~aPE~~~~~~-~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (257)
                      ++..|++||.+.... ++.++|+||||+++|++++|..||......   .....+          .........+....+
T Consensus       163 ~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~~~~---~~~~~~----------~~~~~~~~~~~~~~~  229 (258)
T cd06632         163 GSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLEGV---AAVFKI----------GRSKELPPIPDHLSD  229 (258)
T ss_pred             CCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccCcHH---HHHHHH----------HhcccCCCcCCCcCH
Confidence            677899999987766 889999999999999999999999754211   000000          000111122334457


Q ss_pred             HHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          232 NLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       232 ~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .+.+++.+||+.+|.+|| +.++++
T Consensus       230 ~~~~li~~~l~~~p~~Rp~~~~~l~  254 (258)
T cd06632         230 EAKDFILKCLQRDPSLRPTAAELLE  254 (258)
T ss_pred             HHHHHHHHHhhcCcccCcCHHHHhc
Confidence            788999999999999999 999975

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=100.00  E-value=1.5e-33  Score=237.25  Aligned_cols=239  Identities=16%  Similarity=0.151  Sum_probs=175.3

Q ss_pred             ccccceeeeccc-CCCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      +.++.||+++.. ++..+++|...           +.+|++.+.         +++|+|++++.+.+...+..++||||+
T Consensus        11 g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~i~~~~~~~~~~~~~~~v~e~~   81 (284)
T cd07860          11 GTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLK---------ELNHPNIVKLLDVIHTENKLYLVFEFL   81 (284)
T ss_pred             CCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHH---------hcCCCCCcchhhhcccCCcEEEEeecc
Confidence            567899999865 45666776543           334555555         889999999999999999999999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---c
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---F  148 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~  148 (257)
                      . ++|.+++.......+++.++..++.|++.|+.|||++   +++|+|++|+||+++.++.++|+|||++......   .
T Consensus        82 ~-~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~---~i~H~~l~p~nill~~~~~~~l~dfg~~~~~~~~~~~~  157 (284)
T cd07860          82 H-QDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTY  157 (284)
T ss_pred             c-cCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEEeeccchhhcccCcccc
Confidence            6 6899998764567799999999999999999999999   9999999999999999999999999988654322   1


Q ss_pred             ccccCCCCccCcccccCCC-CCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHH-------HHhh-hhhhhhhh
Q 044568          149 VIDKRDKGYMAPECYKRTP-ISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWV-------YKCF-INRELNKL  219 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~~~-~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~  219 (257)
                      ....++..|+|||.+.+.. ++.++|+||||+++||+++|+.||................       ++.. ..+.....
T Consensus       158 ~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (284)
T cd07860         158 THEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSLPDYKPS  237 (284)
T ss_pred             ccccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhhhhHHHHHHhh
Confidence            2234567799999887654 5889999999999999999999997553221111111000       0000 00000000


Q ss_pred             hcCC------CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          220 VRGT------KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       220 ~~~~------~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ....      .........+.+++.+||+.||.+|| ++|+++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~  280 (284)
T cd07860         238 FPKWARQDFSKVVPPLDEDGRDLLSQMLHYDPNKRISAKAALA  280 (284)
T ss_pred             cccccccCHHHHcccCCHHHHHHHHHhcCCCcccCCCHHHHhc
Confidence            0000      00112345678999999999999999 999975

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=100.00  E-value=1.5e-33  Score=237.10  Aligned_cols=234  Identities=16%  Similarity=0.130  Sum_probs=170.1

Q ss_pred             ccccceeeecccC-CCCCeeeccchhh-hHHHHhHhhhccccccc-cCCceeeeceeeee------cCceeEEEeecCCC
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSWTA-DIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKL------TSVSGKIERPVRNG   74 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~------~~~~~lV~E~~~~g   74 (257)
                      +.++.||+++... +..+++|...... +...+... .. .+.++ .|+|++++.+.+..      .+..++||||+++|
T Consensus        27 g~~~~v~~~~~~~~~~~~a~K~~~~~~~~~~~~~~e-~~-~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~iv~e~~~~~  104 (282)
T cd06636          27 GTYGQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKLE-IN-MLKKYSHHRNIATYYGAFIKKSPPGHDDQLWLVMEFCGAG  104 (282)
T ss_pred             CCCeEEEEEEEcCCCcEEEEEEEecChHHHHHHHHH-HH-HHHHhcCCCcEEEEeeehhcccccCCCCEEEEEEEeCCCC
Confidence            5688999999754 4445566543211 11111100 00 12244 59999999988753      46789999999999


Q ss_pred             CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC---Ccccc
Q 044568           75 SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE---DFVID  151 (257)
Q Consensus        75 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~---~~~~~  151 (257)
                      +|.+++.......+++..+..++.|++.|+.|||++   +++|+|++|+||++++++.++|+|||++.....   .....
T Consensus       105 ~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~---~ivH~dl~~~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~  181 (282)
T cd06636         105 SVTDLVKNTKGNALKEDWIAYICREILRGLAHLHAH---KVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTF  181 (282)
T ss_pred             cHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEeeCcchhhhhccccCCCcc
Confidence            999999764556688888999999999999999999   999999999999999999999999998764322   12334


Q ss_pred             cCCCCccCccccc-----CCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCC
Q 044568          152 KRDKGYMAPECYK-----RTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVD  226 (257)
Q Consensus       152 ~~~~~~~aPE~~~-----~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (257)
                      .++..|+|||.+.     ...++.++|+||||+++|||++|..||..........             ............
T Consensus       182 ~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~~~~~~~~-------------~~~~~~~~~~~~  248 (282)
T cd06636         182 IGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMHPMRALF-------------LIPRNPPPKLKS  248 (282)
T ss_pred             cccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCccccCHHhhhh-------------hHhhCCCCCCcc
Confidence            5778899999886     3457889999999999999999999996442111000             000111111112


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          227 KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       227 ~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ...+..+.+++.+||+.||.+|| +.|+++
T Consensus       249 ~~~~~~~~~li~~cl~~~p~~Rp~~~ell~  278 (282)
T cd06636         249 KKWSKKFIDFIEGCLVKNYLSRPSTEQLLK  278 (282)
T ss_pred             cccCHHHHHHHHHHhCCChhhCcCHHHHhc
Confidence            23456799999999999999999 999975

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=100.00  E-value=3.6e-33  Score=234.41  Aligned_cols=230  Identities=21%  Similarity=0.216  Sum_probs=175.2

Q ss_pred             ccccceeeeccc-CCCCCeeeccchhh---hHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHH
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSWTA---DIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDI   79 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~   79 (257)
                      +.++.||++... ++..+++|......   ..+.+. ... ....++.|+|++++.+.+...+..++||||+++++|.++
T Consensus        15 G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~-~e~-~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~   92 (277)
T cd06641          15 GSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQ-QEI-TVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDL   92 (277)
T ss_pred             cCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHH-HHH-HHHHhcCCCCEeEEEEEEEeCCeEEEEEEeCCCCcHHHH
Confidence            568999999864 55667777644211   111111 011 133388999999999999999999999999999999999


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---cccccCCCC
Q 044568           80 IFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---FVIDKRDKG  156 (257)
Q Consensus        80 l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~~~~~~~~~  156 (257)
                      +.   ...+++..+..++.|++.|+.+||++   +++|+|++|+||+++.++.++++|||++......   .....++..
T Consensus        93 i~---~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~  166 (277)
T cd06641          93 LE---PGPLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPF  166 (277)
T ss_pred             Hh---cCCCCHHHHHHHHHHHHHHHHHHccC---CeecCCCCHHhEEECCCCCEEEeecccceecccchhhhccccCCcc
Confidence            85   34689999999999999999999999   9999999999999999999999999987643322   123356777


Q ss_pred             ccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHH
Q 044568          157 YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKV  236 (257)
Q Consensus       157 ~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  236 (257)
                      |+|||.+.+..++.++|+||||+++|++++|..||.......   ...    .      ... ......+...+..+.++
T Consensus       167 y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~---~~~----~------~~~-~~~~~~~~~~~~~~~~~  232 (277)
T cd06641         167 WMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHSELHPMK---VLF----L------IPK-NNPPTLEGNYSKPLKEF  232 (277)
T ss_pred             ccChhhhccCCCCchhhHHHHHHHHHHHHcCCCCCCccchHH---HHH----H------Hhc-CCCCCCCcccCHHHHHH
Confidence            999999988888999999999999999999999996431110   000    0      000 00112233445778899


Q ss_pred             HHHcccCCCCCCC-hHHHHH
Q 044568          237 GLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       237 ~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +.+||+.+|.+|| +.++++
T Consensus       233 i~~~l~~~p~~Rp~~~~~l~  252 (277)
T cd06641         233 VEACLNKEPSFRPTAKELLK  252 (277)
T ss_pred             HHHHccCChhhCcCHHHHHh
Confidence            9999999999999 999986

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=1.8e-33  Score=235.39  Aligned_cols=236  Identities=19%  Similarity=0.163  Sum_probs=174.7

Q ss_pred             ccccceeeeccc-CCCCCeeeccchhh------------hHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSWTA------------DIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~~~------------~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||+|... ++..+++|......            ..+.+.  ..-..+.++.|+|++++.+.+...+..++||||
T Consensus        12 g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   89 (272)
T cd06629          12 GTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALR--SEIETLKDLDHLNIVQYLGFETTEEYLSIFLEY   89 (272)
T ss_pred             cCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHH--HHHHHHHhcCCCCcceEEEEeccCCceEEEEec
Confidence            568899999854 45667777653210            011111  000133488899999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---  147 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---  147 (257)
                      +++|+|.+++.+  ...+++..+..++.|++.|+.|||++   +++|+||+|+||+++.++.++++|||.+......   
T Consensus        90 ~~~~~L~~~l~~--~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~  164 (272)
T cd06629          90 VPGGSIGSCLRT--YGRFEEQLVRFFTEQVLEGLAYLHSK---GILHRDLKADNLLVDADGICKISDFGISKKSDDIYDN  164 (272)
T ss_pred             CCCCcHHHHHhh--ccCCCHHHHHHHHHHHHHHHHHHhhC---CeeecCCChhhEEEcCCCeEEEeeccccccccccccc
Confidence            999999999974  36789999999999999999999999   9999999999999999999999999988653321   


Q ss_pred             --cccccCCCCccCcccccCCC--CCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC
Q 044568          148 --FVIDKRDKGYMAPECYKRTP--ISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  223 (257)
Q Consensus       148 --~~~~~~~~~~~aPE~~~~~~--~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (257)
                        .....++..|+|||.+....  ++.++|+||||+++||+++|..||........   ...    .. ........ +.
T Consensus       165 ~~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~---~~~----~~-~~~~~~~~-~~  235 (272)
T cd06629         165 DQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEEAIAA---MFK----LG-NKRSAPPI-PP  235 (272)
T ss_pred             cccccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCCCCcCcchHHH---HHH----hh-ccccCCcC-Cc
Confidence              12335677899999987654  78999999999999999999999964311110   000    00 00000000 11


Q ss_pred             CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          224 KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       224 ~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ......+..+.+++.+||+.+|.+|| +.++++
T Consensus       236 ~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  268 (272)
T cd06629         236 DVSMNLSPVALDFLNACFTINPDNRPTARELLQ  268 (272)
T ss_pred             cccccCCHHHHHHHHHHhcCChhhCCCHHHHhh
Confidence            12223457899999999999999999 999986

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=100.00  E-value=1.4e-33  Score=239.77  Aligned_cols=237  Identities=14%  Similarity=0.155  Sum_probs=173.6

Q ss_pred             ccccceeeecccC-CCCCeeeccch----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +.++.||+++... ++.+++|....          .+|++.+.         ++.|+|++++.+.+...+..++||||++
T Consensus        17 g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~---------~l~h~nI~~~~~~~~~~~~~~lv~e~~~   87 (301)
T cd07873          17 GTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLK---------DLKHANIVTLHDIIHTEKSLTLVFEYLD   87 (301)
T ss_pred             CcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHH---------hcCCCCcceEEEEEecCCeEEEEEeccc
Confidence            5688999998654 55567776542          23444443         8899999999999999999999999997


Q ss_pred             CCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---cc
Q 044568           73 NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---FV  149 (257)
Q Consensus        73 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~~  149 (257)
                       ++|.+++.. ....+++..+..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||++......   ..
T Consensus        88 -~~l~~~l~~-~~~~~~~~~~~~~~~qi~~aL~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~  162 (301)
T cd07873          88 -KDLKQYLDD-CGNSINMHNVKLFLFQLLRGLNYCHRR---KVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYS  162 (301)
T ss_pred             -cCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHHHEEECCCCcEEECcCcchhccCCCCCccc
Confidence             599999875 455689999999999999999999999   9999999999999999999999999988643321   12


Q ss_pred             cccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC-----
Q 044568          150 IDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT-----  223 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  223 (257)
                      ...++..|+|||.+.+. .++.++|+||||+++|||++|+.||.................. .....+.......     
T Consensus       163 ~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  241 (301)
T cd07873         163 NEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGSTVEEQLHFIFRILGT-PTEETWPGILSNEEFKSY  241 (301)
T ss_pred             ccceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCC-CChhhchhhhcccccccc
Confidence            33557789999998754 4788999999999999999999999755221110000000000 0000000000000     


Q ss_pred             -----------CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          224 -----------KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       224 -----------~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                                 .........+.+++.+||+.||.+|| ++|+++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~eil~  285 (301)
T cd07873         242 NYPKYRADCLHNHAPRLDSDGAELLSKLLQFEGRKRISAEEAMK  285 (301)
T ss_pred             ccCccccccHHhhcCCCCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence                       00112345678999999999999999 999975

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=100.00  E-value=2.2e-34  Score=250.84  Aligned_cols=186  Identities=15%  Similarity=0.149  Sum_probs=149.9

Q ss_pred             ccccceeeecccC-CCCCeeeccchhh---hHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHH
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSWTA---DIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDI   79 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~   79 (257)
                      +.++.||+++... +..+++|...-..   .-..-.+......+..+.|++++++...+...+..++||||+++|+|.++
T Consensus        12 G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~   91 (360)
T cd05627          12 GAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIMEFLPGGDMMTL   91 (360)
T ss_pred             CCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEeCCCCccHHHH
Confidence            5688999998664 5566777654211   00000111111133478899999999999999999999999999999999


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC------------
Q 044568           80 IFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED------------  147 (257)
Q Consensus        80 l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~------------  147 (257)
                      +.  ....+++..+..++.|++.||.|||++   +++||||||+||+++.++.++|+|||++......            
T Consensus        92 l~--~~~~l~~~~~~~~~~qi~~~L~~lH~~---givHrDLkp~NIli~~~~~vkL~DfG~~~~~~~~~~~~~~~~~~~~  166 (360)
T cd05627          92 LM--KKDTLSEEATQFYIAETVLAIDAIHQL---GFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRTEFYRNLTHN  166 (360)
T ss_pred             HH--hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEccCCCHHHEEECCCCCEEEeeccCCcccccccccccccccccC
Confidence            97  456789999999999999999999999   9999999999999999999999999987633211            


Q ss_pred             --------------------------cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcC
Q 044568          148 --------------------------FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEID  194 (257)
Q Consensus       148 --------------------------~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~  194 (257)
                                                .....||+.|+|||++.+..++.++|+|||||++|||++|..||...
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvilyel~tG~~Pf~~~  239 (360)
T cd05627         167 PPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSE  239 (360)
T ss_pred             CcccccccccccccccccccccccccccccCCCccccCHHHHcCCCCCCcceeccccceeeecccCCCCCCCC
Confidence                                      01236888999999999989999999999999999999999999755

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=100.00  E-value=8.1e-34  Score=240.47  Aligned_cols=233  Identities=16%  Similarity=0.159  Sum_probs=174.1

Q ss_pred             ccccceeeeccc-CCCCCeeeccchhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHHHhc
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSWTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFC   82 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~   82 (257)
                      +.++.||++... ++..+++|..........-.....-..+..+.|+|++++.+.+...+..++||||+++++|.+++. 
T Consensus        33 g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~~~L~~~~~-  111 (292)
T cd06658          33 GSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFLEGGALTDIVT-  111 (292)
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEeCCCCCcHHHHHh-
Confidence            567889999865 456667776543111100000000012337889999999999999999999999999999999985 


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc---ccccCCCCccC
Q 044568           83 SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF---VIDKRDKGYMA  159 (257)
Q Consensus        83 ~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~---~~~~~~~~~~a  159 (257)
                        ...+++.++..++.|++.|+.|||++   +++|+||+|.||+++.++.++|+|||++.......   ....++..|+|
T Consensus       112 --~~~l~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~a  186 (292)
T cd06658         112 --HTRMNEEQIATVCLSVLRALSYLHNQ---GVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKRKSLVGTPYWMA  186 (292)
T ss_pred             --cCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEcCCCCEEEccCcchhhcccccccCceeecCccccC
Confidence              34689999999999999999999999   99999999999999999999999999876432221   23456788999


Q ss_pred             cccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC-CCCHHHHHHHHHHHH
Q 044568          160 PECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT-KVDKKNLENLVKVGL  238 (257)
Q Consensus       160 PE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~  238 (257)
                      ||.+.+..++.++|+||||+++||+++|..||.......   ....          ........ .........+.+++.
T Consensus       187 PE~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~---~~~~----------~~~~~~~~~~~~~~~~~~~~~li~  253 (292)
T cd06658         187 PEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQ---AMRR----------IRDNLPPRVKDSHKVSSVLRGFLD  253 (292)
T ss_pred             HHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH---HHHH----------HHhcCCCccccccccCHHHHHHHH
Confidence            999988888999999999999999999999997542111   0100          00111111 111223456888999


Q ss_pred             HcccCCCCCCC-hHHHHH
Q 044568          239 WCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       239 ~cl~~~p~~RP-~~ei~~  255 (257)
                      .||+.||.+|| ++|+++
T Consensus       254 ~~l~~~P~~Rpt~~~il~  271 (292)
T cd06658         254 LMLVREPSQRATAQELLQ  271 (292)
T ss_pred             HHccCChhHCcCHHHHhh
Confidence            99999999999 999975

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=100.00  E-value=2.7e-33  Score=233.72  Aligned_cols=224  Identities=18%  Similarity=0.172  Sum_probs=169.0

Q ss_pred             ccccceeeeccc-CCCCCeeeccch--------------hhhHHHHhHhhhccccccccCCceeeeceeeee--cCceeE
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW--------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL--TSVSGK   66 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~--------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~--~~~~~l   66 (257)
                      +.++.||++... ++..+++|....              .+|++.+.         +++|+|++++.+.+..  ....++
T Consensus        13 g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~---------~l~h~~i~~~~~~~~~~~~~~~~l   83 (266)
T cd06651          13 GAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLK---------NLQHERIVQYYGCLRDRAEKTLTI   83 (266)
T ss_pred             CCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHH---------HcCCCCeeeEEEEEEcCCCCEEEE
Confidence            467889999865 456667775432              22333333         8899999999998775  356789


Q ss_pred             EEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC
Q 044568           67 IERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE  146 (257)
Q Consensus        67 V~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~  146 (257)
                      ++||+++++|.+++.  ....+++.....++.|++.||.|||++   +++|+|++|+||+++.++.++|+|||++.....
T Consensus        84 ~~e~~~~~~L~~~l~--~~~~l~~~~~~~~~~qi~~~l~~LH~~---~i~H~~l~p~nil~~~~~~~~l~dfg~~~~~~~  158 (266)
T cd06651          84 FMEYMPGGSVKDQLK--AYGALTESVTRKYTRQILEGMSYLHSN---MIVHRDIKGANILRDSAGNVKLGDFGASKRLQT  158 (266)
T ss_pred             EEeCCCCCcHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEccCCCcccccc
Confidence            999999999999997  345689999999999999999999999   999999999999999999999999998864322


Q ss_pred             C------cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhh
Q 044568          147 D------FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLV  220 (257)
Q Consensus       147 ~------~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (257)
                      .      .....++..|+|||.+.+..++.++|+||||+++||+++|+.||....... .  ..          ......
T Consensus       159 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~~~~~-~--~~----------~~~~~~  225 (266)
T cd06651         159 ICMSGTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEYEAMA-A--IF----------KIATQP  225 (266)
T ss_pred             ccccCCccccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHHCCCCccccchHH-H--HH----------HHhcCC
Confidence            1      122346778999999988888999999999999999999999997441111 0  00          000000


Q ss_pred             cCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          221 RGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       221 ~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .....+....+.+..++ +||..+|++|| ++|+++
T Consensus       226 ~~~~~~~~~~~~~~~li-~~~~~~p~~Rp~~~eil~  260 (266)
T cd06651         226 TNPQLPSHISEHARDFL-GCIFVEARHRPSAEELLR  260 (266)
T ss_pred             CCCCCchhcCHHHHHHH-HHhcCChhhCcCHHHHhc
Confidence            11122333445566666 78889999999 999975

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.8e-33  Score=232.60  Aligned_cols=228  Identities=20%  Similarity=0.149  Sum_probs=175.5

Q ss_pred             ccccceeeecccCC-CCCeeeccc---------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCC
Q 044568            4 TKLSNFYRSSFNAR-NSPWISRVS---------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRN   73 (257)
Q Consensus         4 ~~~~~~y~~~~~~~-~~~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~   73 (257)
                      +.++.||++....+ ...++|...         +.++++.+         .++.|+|++++.+.+...+..+++|||+++
T Consensus        14 g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l---------~~~~h~~i~~~~~~~~~~~~~~l~~e~~~~   84 (262)
T cd06613          14 GTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISML---------KECRHPNIVAYFGSYLRRDKLWIVMEYCGG   84 (262)
T ss_pred             CCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHH---------HhCCCCChhceEEEEEeCCEEEEEEeCCCC
Confidence            56788999987654 445555433         23333333         388999999999999999999999999999


Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc---cc
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF---VI  150 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~---~~  150 (257)
                      ++|.+++.. ....++..++..++.|++.|+.|||++   +++|+|++|+||++++++.++++|||.+.......   ..
T Consensus        85 ~~l~~~~~~-~~~~l~~~~~~~~~~ql~~~l~~lh~~---~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~  160 (262)
T cd06613          85 GSLQDIYQV-TRGPLSELQIAYVCRETLKGLAYLHET---GKIHRDIKGANILLTEDGDVKLADFGVSAQLTATIAKRKS  160 (262)
T ss_pred             CcHHHHHHh-hccCCCHHHHHHHHHHHHHHHHHHHhC---CceecCCChhhEEECCCCCEEECccccchhhhhhhhcccc
Confidence            999999974 346799999999999999999999999   99999999999999999999999999886543221   23


Q ss_pred             ccCCCCccCcccccCC---CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC-CCC
Q 044568          151 DKRDKGYMAPECYKRT---PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT-KVD  226 (257)
Q Consensus       151 ~~~~~~~~aPE~~~~~---~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  226 (257)
                      ..++..|++||.+...   .++.++|+||||+++|||++|..||........   ......        ....... ...
T Consensus       161 ~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~~~~~---~~~~~~--------~~~~~~~~~~~  229 (262)
T cd06613         161 FIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLHPMRA---LFLISK--------SNFPPPKLKDK  229 (262)
T ss_pred             ccCCccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCCCHHHH---HHHHHh--------ccCCCccccch
Confidence            3567789999998766   788999999999999999999999975421111   000000        0000000 123


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          227 KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       227 ~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ...+..+.+++.+||+.+|.+|| +.+++.
T Consensus       230 ~~~~~~~~~li~~~l~~~p~~Rpt~~~il~  259 (262)
T cd06613         230 EKWSPVFHDFIKKCLTKDPKKRPTATKLLQ  259 (262)
T ss_pred             hhhhHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            34457799999999999999999 999975

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=100.00  E-value=5.6e-33  Score=236.78  Aligned_cols=224  Identities=21%  Similarity=0.187  Sum_probs=172.0

Q ss_pred             ccccceeeeccc-CCCCCeeeccch------------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||+++.. .+..+++|....            .+|++++.         ++.|+|++++.+.+...+..++||||
T Consensus        26 g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~---------~l~h~niv~~~~~~~~~~~~~lv~e~   96 (307)
T cd06607          26 GSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQ---------QLRHPNTIEYKGCYLREHTAWLVMEY   96 (307)
T ss_pred             CCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHH---------hCCCCCEEEEEEEEEeCCeEEEEHHh
Confidence            457899999875 455566765432            23333333         78999999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCccc
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVI  150 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~~  150 (257)
                      ++ |++.+.+.. ....+++.++..++.|++.||.|||+.   +++|+||+|+||++++++.++|+|||++...... ..
T Consensus        97 ~~-g~l~~~~~~-~~~~l~~~~~~~~~~ql~~~L~~LH~~---~i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~~~-~~  170 (307)
T cd06607          97 CL-GSASDILEV-HKKPLQEVEIAAICHGALQGLAYLHSH---ERIHRDIKAGNILLTEPGTVKLADFGSASLVSPA-NS  170 (307)
T ss_pred             hC-CCHHHHHHH-cccCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcccEEECCCCCEEEeecCcceecCCC-CC
Confidence            97 688887754 345689999999999999999999999   9999999999999999999999999988654322 33


Q ss_pred             ccCCCCccCccccc---CCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCH
Q 044568          151 DKRDKGYMAPECYK---RTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDK  227 (257)
Q Consensus       151 ~~~~~~~~aPE~~~---~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (257)
                      ..++..|+|||.+.   ...++.++|+||||+++||+++|..||.......   .    ....      .....+.....
T Consensus       171 ~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~~~~~---~----~~~~------~~~~~~~~~~~  237 (307)
T cd06607         171 FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMS---A----LYHI------AQNDSPTLSSN  237 (307)
T ss_pred             ccCCccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCCccHHH---H----HHHH------hcCCCCCCCch
Confidence            45677899999874   3557899999999999999999999996441111   0    0000      00001112233


Q ss_pred             HHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          228 KNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       228 ~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .....+.+++.+||+.+|++|| +.++++
T Consensus       238 ~~~~~~~~li~~~l~~~p~~Rp~~~~il~  266 (307)
T cd06607         238 DWSDYFRNFVDSCLQKIPQDRPSSEELLK  266 (307)
T ss_pred             hhCHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence            4567799999999999999999 999976

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=100.00  E-value=1.7e-33  Score=238.07  Aligned_cols=216  Identities=19%  Similarity=0.121  Sum_probs=173.4

Q ss_pred             ccccceeeecccC-CCCCeeeccch------------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||++.... +..+++|...-            .+|++.+.         ++.|+|++++.+.+...+..++||||
T Consensus        12 g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~---------~l~h~~i~~~~~~~~~~~~~~~v~e~   82 (290)
T cd05580          12 GSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQ---------SIRHPFLVNLYGSFQDDSNLYLVMEY   82 (290)
T ss_pred             CCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHH---------hCCCCCccceeeEEEcCCeEEEEEec
Confidence            5678999998765 45566665431            22333333         78899999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCccc
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVI  150 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~~  150 (257)
                      +++++|.+++.  ....++...+..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||++.........
T Consensus        83 ~~~~~L~~~~~--~~~~l~~~~~~~~~~qil~~l~~lH~~---~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~  157 (290)
T cd05580          83 VPGGELFSHLR--KSGRFPEPVARFYAAQVVLALEYLHSL---DIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGRTYT  157 (290)
T ss_pred             CCCCCHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEECCCCCEEEeeCCCccccCCCCCC
Confidence            99999999997  446789999999999999999999999   9999999999999999999999999998765555455


Q ss_pred             ccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc-CCCCCHHH
Q 044568          151 DKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR-GTKVDKKN  229 (257)
Q Consensus       151 ~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  229 (257)
                      ..+++.|++||.+.+...+.++|+||||+++|+|++|..||......   ....             .... ....+...
T Consensus       158 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~---~~~~-------------~~~~~~~~~~~~~  221 (290)
T cd05580         158 LCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDDNPI---QIYE-------------KILEGKVRFPSFF  221 (290)
T ss_pred             CCCCccccChhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHH---HHHH-------------HHhcCCccCCccC
Confidence            56788899999998888889999999999999999999999754210   0000             0111 11233344


Q ss_pred             HHHHHHHHHHcccCCCCCCC
Q 044568          230 LENLVKVGLWCVQDEPALRP  249 (257)
Q Consensus       230 ~~~l~~l~~~cl~~~p~~RP  249 (257)
                      ...+.+++.+||+.||.+||
T Consensus       222 ~~~l~~li~~~l~~~p~~R~  241 (290)
T cd05580         222 SPDAKDLIRNLLQVDLTKRL  241 (290)
T ss_pred             CHHHHHHHHHHccCCHHHcc
Confidence            67889999999999999998

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=100.00  E-value=2.3e-33  Score=235.13  Aligned_cols=229  Identities=15%  Similarity=0.183  Sum_probs=174.1

Q ss_pred             ccccceeeecccCC------CCCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEE
Q 044568            4 TKLSNFYRSSFNAR------NSPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~~~~------~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV   67 (257)
                      +.++.||+++....      ..+++|...          +.+|++.+.         ++.|+|++++.+.+...+..++|
T Consensus        16 g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~~~~~~~lv   86 (275)
T cd05046          16 GEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFR---------KLSHKNVVRLLGLCREAEPHYMI   86 (275)
T ss_pred             cceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHH---------hcCCcceeeeEEEECCCCcceEE
Confidence            56789999986532      345565543          233444444         88899999999999999999999


Q ss_pred             EeecCCCCHHHHHhccCC-------CCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecc
Q 044568           68 ERPVRNGSLTDIIFCSAE-------RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGL  140 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~~-------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~  140 (257)
                      |||+++|+|.+++.....       ..+++..+..++.|++.||.|||++   +++|+||+|+||+++.++.++++|||+
T Consensus        87 ~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~---~i~H~dlkp~Nili~~~~~~~l~~~~~  163 (275)
T cd05046          87 LEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNA---RFVHRDLAARNCLVSSQREVKVSLLSL  163 (275)
T ss_pred             EEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhc---CcccCcCccceEEEeCCCcEEEccccc
Confidence            999999999999974321       2689999999999999999999999   999999999999999999999999998


Q ss_pred             cccCCCCc----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhh
Q 044568          141 AKLPNEDF----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRE  215 (257)
Q Consensus       141 ~~~~~~~~----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~  215 (257)
                      +.......    ....++..|++||.+.+..++.++||||||+++|++++ |..||......   ......     ....
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~~~~---~~~~~~-----~~~~  235 (275)
T cd05046         164 SKDVYNSEYYKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLSDE---EVLNRL-----QAGK  235 (275)
T ss_pred             ccccCcccccccCCceeEEeecChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCccccchH---HHHHHH-----HcCC
Confidence            76432211    22234556999999988888899999999999999999 78888643111   001000     0000


Q ss_pred             hhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          216 LNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       216 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      .     ....+...+..+.+++.+||+.+|.+|| +.|+++.|
T Consensus       236 ~-----~~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~~l~~l  273 (275)
T cd05046         236 L-----ELPVPEGCPSRLYKLMTRCWAVNPKDRPSFSELVSAL  273 (275)
T ss_pred             c-----CCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHh
Confidence            0     0112234557899999999999999999 99999875

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=100.00  E-value=1.1e-33  Score=240.09  Aligned_cols=225  Identities=17%  Similarity=0.160  Sum_probs=174.4

Q ss_pred             ccccceeeeccc-CCCCCeeeccch---------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCC
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW---------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRN   73 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~---------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~   73 (257)
                      +.++.||++... .+..+++|....         .+|++         .+..+.|+|++++.+.+...+..++||||+++
T Consensus        32 g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~---------~l~~l~hp~i~~~~~~~~~~~~~~iv~e~~~~  102 (297)
T cd06659          32 GSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVV---------IMRDYQHQNVVEMYKSYLVGEELWVLMEFLQG  102 (297)
T ss_pred             CCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHH---------HHHhCCCCchhhhhhheeeCCeEEEEEecCCC
Confidence            467889999865 456677776542         22222         23378899999999999999999999999999


Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---ccc
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---FVI  150 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~~~  150 (257)
                      ++|.+++.   ...+++.++..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||++......   ...
T Consensus       103 ~~L~~~~~---~~~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~  176 (297)
T cd06659         103 GALTDIVS---QTRLNEEQIATVCESVLQALCYLHSQ---GVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKS  176 (297)
T ss_pred             CCHHHHHh---hcCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHeEEccCCcEEEeechhHhhcccccccccc
Confidence            99999884   35689999999999999999999999   9999999999999999999999999987643322   233


Q ss_pred             ccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHH
Q 044568          151 DKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNL  230 (257)
Q Consensus       151 ~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (257)
                      ..++..|+|||.+.+..++.++|+||||+++|||++|..||.......   ....+.     ...    ...........
T Consensus       177 ~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~---~~~~~~-----~~~----~~~~~~~~~~~  244 (297)
T cd06659         177 LVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDSPVQ---AMKRLR-----DSP----PPKLKNAHKIS  244 (297)
T ss_pred             eecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH---HHHHHh-----ccC----CCCccccCCCC
Confidence            457788999999988889999999999999999999999997442111   111100     000    00001122334


Q ss_pred             HHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          231 ENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       231 ~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ..+.+++.+||+.+|++|| +.|+++
T Consensus       245 ~~l~~~i~~~l~~~P~~Rps~~~ll~  270 (297)
T cd06659         245 PVLRDFLERMLTREPQERATAQELLD  270 (297)
T ss_pred             HHHHHHHHHHhcCCcccCcCHHHHhh
Confidence            6688999999999999999 999986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-34  Score=255.63  Aligned_cols=224  Identities=20%  Similarity=0.234  Sum_probs=181.5

Q ss_pred             ccceeeecccCCCCC-eeeccch---------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCC
Q 044568            6 LSNFYRSSFNARNSP-WISRVSW---------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGS   75 (257)
Q Consensus         6 ~~~~y~~~~~~~~~~-~i~~~~~---------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gs   75 (257)
                      -+.||.|...++.-. +||++.-         .+|+....         +++|.|||+..|.+...++.-|.||-.+|||
T Consensus       588 YG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~---------~LrHkNIVrYLGs~senGf~kIFMEqVPGGS  658 (1226)
T KOG4279|consen  588 YGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHS---------TLRHKNIVRYLGSVSENGFFKIFMEQVPGGS  658 (1226)
T ss_pred             eeEEEeeccccceeEEEeeecccccchhhccHHHHHHHHH---------HHhhHhHHHHhhccCCCCeEEEEeecCCCCc
Confidence            467999997766555 4676552         34444444         9999999999999999999999999999999


Q ss_pred             HHHHHhccCCCCC--CHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCC-CCceEEeeecccccCC---CCcc
Q 044568           76 LTDIIFCSAERNP--YWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE-FWTAKILDFGLAKLPN---EDFV  149 (257)
Q Consensus        76 L~~~l~~~~~~~l--~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~-~~~~kl~dfg~~~~~~---~~~~  149 (257)
                      |.+.++. .=++|  ++.+.-.+..||++||.|||++   .|+|||||.+|+|+.- .|.+||+|||.+++..   .-..
T Consensus       659 LSsLLrs-kWGPlKDNEstm~fYtkQILeGLkYLHen---~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAginP~TE  734 (1226)
T KOG4279|consen  659 LSSLLRS-KWGPLKDNESTMNFYTKQILEGLKYLHEN---KIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGINPCTE  734 (1226)
T ss_pred             HHHHHHh-ccCCCccchhHHHHHHHHHHHHhhhhhhc---ceeeccccCCcEEEeeccceEEecccccchhhccCCcccc
Confidence            9999985 44555  7778889999999999999999   9999999999999964 7899999999988643   3335


Q ss_pred             cccCCCCccCcccccCCC--CCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC-CCC
Q 044568          150 IDKRDKGYMAPECYKRTP--ISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT-KVD  226 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~~~--~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  226 (257)
                      ...||..|||||++..++  |+.++|||||||++.||.||++||..-.++....         +.   . .+.+.. ++|
T Consensus       735 TFTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~ElgspqAAM---------Fk---V-GmyKvHP~iP  801 (1226)
T KOG4279|consen  735 TFTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELGSPQAAM---------FK---V-GMYKVHPPIP  801 (1226)
T ss_pred             ccccchhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecCChhHhh---------hh---h-cceecCCCCc
Confidence            668899999999998764  8899999999999999999999997443332110         00   0 122222 678


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          227 KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       227 ~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .+...+...++++|+..||.+|| +.++++
T Consensus       802 eelsaeak~FilrcFepd~~~R~sA~~LL~  831 (1226)
T KOG4279|consen  802 EELSAEAKNFILRCFEPDPCDRPSAKDLLQ  831 (1226)
T ss_pred             HHHHHHHHHHHHHHcCCCcccCccHHHhcc
Confidence            88899999999999999999999 999875

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=4.2e-33  Score=234.87  Aligned_cols=227  Identities=18%  Similarity=0.240  Sum_probs=175.1

Q ss_pred             ccccceeeeccc-CCCCCeeeccch----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +.++.||++... .+..+++|....          .+|++.+         .++.|+|++++.+.+...+..++||||++
T Consensus        12 g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l---------~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   82 (286)
T cd06622          12 GNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDIL---------HKAVSPYIVDFYGAFFIEGAVYMCMEYMD   82 (286)
T ss_pred             cCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHH---------HhcCCCcHHhhhhheecCCeEEEEEeecC
Confidence            568899999876 566667775432          2233333         37889999999999999999999999999


Q ss_pred             CCCHHHHHhccC-CCCCCHHHHHHHHHHHHHHHHHHhh-CCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC-Ccc
Q 044568           73 NGSLTDIIFCSA-ERNPYWNQRVRIALDVAKGILYLHD-ECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE-DFV  149 (257)
Q Consensus        73 ~gsL~~~l~~~~-~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~-~~~  149 (257)
                      +++|.+++.... ...+++..+..++.|++.|+.|||+ .   +++|+||+|+||+++.++.++++|||.+..... ...
T Consensus        83 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~  159 (286)
T cd06622          83 AGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEH---NIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVASLAK  159 (286)
T ss_pred             CCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhcC---CEeeCCCCHHHEEECCCCCEEEeecCCcccccCCccc
Confidence            999999987421 3478999999999999999999996 5   899999999999999999999999998865322 223


Q ss_pred             cccCCCCccCcccccCCC------CCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc--
Q 044568          150 IDKRDKGYMAPECYKRTP------ISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR--  221 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~~~------~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  221 (257)
                      ...++..|+|||.+.+..      ++.++|+||||+++|++++|..||........   .          ........  
T Consensus       160 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~---~----------~~~~~~~~~~  226 (286)
T cd06622         160 TNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPETYANI---F----------AQLSAIVDGD  226 (286)
T ss_pred             cCCCccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCCCCCCcchhhH---H----------HHHHHHhhcC
Confidence            345677899999985443      47899999999999999999999964421110   0          00111111  


Q ss_pred             CCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          222 GTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       222 ~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ....+......+..++.+||+.+|.+|| +.++++
T Consensus       227 ~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~  261 (286)
T cd06622         227 PPTLPSGYSDDAQDFVAKCLNKIPNRRPTYAQLLE  261 (286)
T ss_pred             CCCCCcccCHHHHHHHHHHcccCcccCCCHHHHhc
Confidence            1123444667889999999999999999 999875

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=100.00  E-value=2e-33  Score=236.52  Aligned_cols=236  Identities=15%  Similarity=0.110  Sum_probs=172.7

Q ss_pred             ccccceeeecccC-CCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      +.++.||++.... ++.+++|...           +.+|++.+.         ++.|+|++++.+.+...+..++|+||+
T Consensus        11 g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~---------~l~h~~i~~~~~~~~~~~~~~lv~e~~   81 (284)
T cd07839          11 GTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLK---------ELKHKNIVRLYDVLHSDKKLTLVFEYC   81 (284)
T ss_pred             cCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHH---------hcCCCCeeeHHHHhccCCceEEEEecC
Confidence            4577899998764 4556666543           234555555         788999999999999999999999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc---
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF---  148 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~---  148 (257)
                      + ++|.+++.. ....+++..+..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||.+.......   
T Consensus        82 ~-~~l~~~~~~-~~~~~~~~~~~~~~~qi~~al~~LH~~---~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~  156 (284)
T cd07839          82 D-QDLKKYFDS-CNGDIDPEIVKSFMFQLLKGLAFCHSH---NVLHRDLKPQNLLINKNGELKLADFGLARAFGIPVRCY  156 (284)
T ss_pred             C-CCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEEcCCCcEEECccchhhccCCCCCCc
Confidence            7 588888864 456699999999999999999999999   99999999999999999999999999887543221   


Q ss_pred             ccccCCCCccCcccccCCC-CCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhh-----hhhhhhhhcC
Q 044568          149 VIDKRDKGYMAPECYKRTP-ISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFI-----NRELNKLVRG  222 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~~~-~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  222 (257)
                      ....++..|+|||.+.+.. ++.++||||||+++|||++|..||.......+  ...........     .+......+.
T Consensus       157 ~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (284)
T cd07839         157 SAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDD--QLKRIFRLLGTPTEESWPGVSKLPDY  234 (284)
T ss_pred             CCCccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcCCCCHHH--HHHHHHHHhCCCChHHhHHhhhcccc
Confidence            2345577899999987644 68999999999999999999998754322211  11111000000     0000000000


Q ss_pred             C------------CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          223 T------------KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       223 ~------------~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .            .......+.+.+++.+||+.||.+|| ++|+++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~il~  280 (284)
T cd07839         235 KPYPMYPATTSLVNVVPKLNSTGRDLLQNLLVCNPVQRISAEEALQ  280 (284)
T ss_pred             cccCCCCCcchhhhhcccCCHHHHHHHHHHhcCChhhcCCHHHHhc
Confidence            0            00112346788999999999999999 999975

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=100.00  E-value=3.1e-33  Score=231.52  Aligned_cols=226  Identities=17%  Similarity=0.214  Sum_probs=174.6

Q ss_pred             ccccceeeeccc-CCCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      +.++.+|++... ++...++|...           +.+|++.+.         ++.|+|++++.+.+...+..++||||+
T Consensus        11 g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~---------~~~~~~i~~~~~~~~~~~~~~lv~e~~   81 (256)
T cd08220          11 GAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLK---------LLSHPNIIEYYENFLEDKALMIVMEYA   81 (256)
T ss_pred             cCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHh---------hCCCCchhheeeeEecCCEEEEEEecC
Confidence            457889988754 44555666543           223333333         778999999999999999999999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCC-CceEEeeecccccCCCCc--
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF-WTAKILDFGLAKLPNEDF--  148 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~-~~~kl~dfg~~~~~~~~~--  148 (257)
                      ++++|.+++.......+++..+..++.|++.|+.|||++   +++|+|++|+||+++.+ ..++++|||.+.......  
T Consensus        82 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~---~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~~  158 (256)
T cd08220          82 PGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTK---LILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKSKA  158 (256)
T ss_pred             CCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEEccCCCceecCCCccc
Confidence            999999999764456689999999999999999999999   99999999999999854 467999999987543322  


Q ss_pred             ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHH
Q 044568          149 VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKK  228 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (257)
                      ....++..|+|||.+.+..++.++|+||||+++|++++|..||.......   .....         ....  ....+..
T Consensus       159 ~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~---~~~~~---------~~~~--~~~~~~~  224 (256)
T cd08220         159 YTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAANLPA---LVLKI---------MSGT--FAPISDR  224 (256)
T ss_pred             cccccCCcccCchhccCCCCCcccchHHHHHHHHHHHhCCCCcccCchHH---HHHHH---------HhcC--CCCCCCC
Confidence            23456778999999988888999999999999999999999997542111   00000         0000  0122333


Q ss_pred             HHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          229 NLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       229 ~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ....+.+++.+||+.+|.+|| +.|+++
T Consensus       225 ~~~~l~~li~~~l~~~p~~Rpt~~~ll~  252 (256)
T cd08220         225 YSPDLRQLILSMLNLDPSKRPQLSQIMA  252 (256)
T ss_pred             cCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence            566789999999999999999 999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=4.5e-34  Score=252.93  Aligned_cols=222  Identities=18%  Similarity=0.216  Sum_probs=181.1

Q ss_pred             ccccceeeecccCCCCC----eeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEe
Q 044568            4 TKLSNFYRSSFNARNSP----WISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIER   69 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~----~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E   69 (257)
                      +.|++|.+|.+.+....    ++|-+.          |.+|+..+.         +++|+++++++|...+ ....||||
T Consensus       121 GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~---------~L~H~hliRLyGvVl~-qp~mMV~E  190 (1039)
T KOG0199|consen  121 GSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHML---------KLQHPHLIRLYGVVLD-QPAMMVFE  190 (1039)
T ss_pred             cceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHH---------hccCcceeEEeeeecc-chhhHHhh
Confidence            57899999998876554    344332          455555555         9999999999999988 78889999


Q ss_pred             ecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcc
Q 044568           70 PVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFV  149 (257)
Q Consensus        70 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~  149 (257)
                      +++.|||.+.|++.....|.......|+.||+.|+.||.++   ++||||+.++|+++.....+||+|||+.+.......
T Consensus       191 LaplGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLesk---rlvHRDLAARNlllasprtVKI~DFGLmRaLg~ned  267 (1039)
T KOG0199|consen  191 LAPLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLESK---RLVHRDLAARNLLLASPRTVKICDFGLMRALGENED  267 (1039)
T ss_pred             hcccchHHHHHhhccccceeHHHHHHHHHHHHHHHHHHhhh---hhhhhhhhhhhheecccceeeeecccceeccCCCCc
Confidence            99999999999975566677788889999999999999999   999999999999999999999999999986554432


Q ss_pred             cc------cCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcC
Q 044568          150 ID------KRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRG  222 (257)
Q Consensus       150 ~~------~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (257)
                      ..      .-...|+|||.+....++.+||+|+||+++|||++ |..||.+...                 ..+...++.
T Consensus       268 ~Yvm~p~rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~~g-----------------~qIL~~iD~  330 (1039)
T KOG0199|consen  268 MYVMAPQRKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGCRG-----------------IQILKNIDA  330 (1039)
T ss_pred             ceEecCCCcCcccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCCCCCH-----------------HHHHHhccc
Confidence            22      22345999999999999999999999999999999 8899976521                 112222222


Q ss_pred             C---CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          223 T---KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       223 ~---~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .   .-++.|++++++++.+||..+|++|| +..|.+
T Consensus       331 ~erLpRPk~csedIY~imk~cWah~paDRptFsair~  367 (1039)
T KOG0199|consen  331 GERLPRPKYCSEDIYQIMKNCWAHNPADRPTFSAIRE  367 (1039)
T ss_pred             cccCCCCCCChHHHHHHHHHhccCCccccccHHHHHH
Confidence            2   34678899999999999999999999 998864

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=100.00  E-value=2.5e-33  Score=241.63  Aligned_cols=238  Identities=12%  Similarity=0.055  Sum_probs=169.4

Q ss_pred             ccccceeeecccCCCC-Ceeeccchh---hhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHH
Q 044568            4 TKLSNFYRSSFNARNS-PWISRVSWT---ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDI   79 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~-~~i~~~~~~---~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~   79 (257)
                      +.++.||+++...+.. +++|...-.   ...+...+......+....|++++++...+...+..++||||+++|+|.++
T Consensus        12 G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~ey~~~g~L~~~   91 (332)
T cd05623          12 GAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLVMDYYVGGDLLTL   91 (332)
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEEeccCCCcHHHH
Confidence            5688999999776554 556654311   111110011111133377899999999999999999999999999999999


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC----cccccCCC
Q 044568           80 IFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED----FVIDKRDK  155 (257)
Q Consensus        80 l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~----~~~~~~~~  155 (257)
                      +.. ....+++..+..++.|++.|+.|||++   +++||||||+||+++.++.++|+|||++......    .....||+
T Consensus        92 l~~-~~~~l~~~~~~~~~~qi~~al~~lH~~---~iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~~~~~~~~~~~~gt~  167 (332)
T cd05623          92 LSK-FEDRLPEDMARFYLAEMVIAIDSVHQL---HYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTP  167 (332)
T ss_pred             HHH-hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHEEECCCCCEEEeecchheecccCCcceecccccCc
Confidence            975 356789999999999999999999999   9999999999999999999999999988643221    12346889


Q ss_pred             CccCccccc-----CCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHH
Q 044568          156 GYMAPECYK-----RTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNL  230 (257)
Q Consensus       156 ~~~aPE~~~-----~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (257)
                      .|+|||++.     ...++.++|+|||||++|||++|+.||.......   .....     ....  .............
T Consensus       168 ~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~~~~~~~---~~~~i-----~~~~--~~~~~p~~~~~~s  237 (332)
T cd05623         168 DYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYAESLVE---TYGKI-----MNHK--ERFQFPAQVTDVS  237 (332)
T ss_pred             cccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCCCCCHHH---HHHHH-----hCCC--ccccCCCccccCC
Confidence            999999986     3457899999999999999999999997542111   01000     0000  0000001112335


Q ss_pred             HHHHHHHHHcccCCCCC--CC-hHHHHH
Q 044568          231 ENLVKVGLWCVQDEPAL--RP-MKCAVM  255 (257)
Q Consensus       231 ~~l~~l~~~cl~~~p~~--RP-~~ei~~  255 (257)
                      +.+.+++.+|+..+|.+  || ++|+++
T Consensus       238 ~~~~~li~~ll~~~~~r~~r~~~~~~~~  265 (332)
T cd05623         238 EDAKDLIRRLICSREHRLGQNGIEDFKQ  265 (332)
T ss_pred             HHHHHHHHHHccChhhhcCCCCHHHHhC
Confidence            67788888887654444  67 888764

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.4e-33  Score=241.71  Aligned_cols=236  Identities=12%  Similarity=0.038  Sum_probs=168.5

Q ss_pred             ccccceeeecccC-CCCCeeeccchh-----hhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHH
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSWT-----ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLT   77 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~   77 (257)
                      +.++.||+++... +..+++|...-.     .+.+.+.  ........+.|+|++.+...+...+..++||||+++|+|.
T Consensus        12 G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~--~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~g~~L~   89 (331)
T cd05597          12 GAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFR--EERDVLVNGDRRWITNLHYAFQDENNLYLVMDYYVGGDLL   89 (331)
T ss_pred             cCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHH--HHHHHHHhCCCCCCCceEEEEecCCeEEEEEecCCCCcHH
Confidence            5688999999665 556677765421     1111111  0111223678999999999999999999999999999999


Q ss_pred             HHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc----ccccC
Q 044568           78 DIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF----VIDKR  153 (257)
Q Consensus        78 ~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~----~~~~~  153 (257)
                      +++.. ....+++.++..++.|++.||.|||++   +++||||||+||+++.++.++|+|||++.......    ....+
T Consensus        90 ~~l~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~g  165 (331)
T cd05597          90 TLLSK-FEDRLPEDMARFYLAEMVLAIDSVHQL---GYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLADGTVQSNVAVG  165 (331)
T ss_pred             HHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEECCCCHHHEEECCCCCEEEEECCceeecCCCCCccccceec
Confidence            99974 356789999999999999999999999   99999999999999999999999999986533221    22458


Q ss_pred             CCCccCcccccC-----CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHH
Q 044568          154 DKGYMAPECYKR-----TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKK  228 (257)
Q Consensus       154 ~~~~~aPE~~~~-----~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (257)
                      |+.|+|||++..     ..++.++|||||||++|||++|+.||........   ..    ......   ....-......
T Consensus       166 t~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~---~~----~i~~~~---~~~~~~~~~~~  235 (331)
T cd05597         166 TPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVET---YG----KIMNHK---EHFQFPPDVTD  235 (331)
T ss_pred             cccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCCCCCCCCHHHH---HH----HHHcCC---CcccCCCccCC
Confidence            899999999863     3467899999999999999999999975421110   00    000000   00110011112


Q ss_pred             HHHHHHHHHHHcccC--CCCCCC-hHHHHH
Q 044568          229 NLENLVKVGLWCVQD--EPALRP-MKCAVM  255 (257)
Q Consensus       229 ~~~~l~~l~~~cl~~--~p~~RP-~~ei~~  255 (257)
                      .+..+.+++.+|+..  ++..|| +.++++
T Consensus       236 ~~~~~~~li~~ll~~~~~r~~r~~~~~~l~  265 (331)
T cd05597         236 VSEEAKDLIRRLICSPETRLGRNGLQDFKD  265 (331)
T ss_pred             CCHHHHHHHHHHccCcccccCCCCHHHHhc
Confidence            345677777776654  334488 888864

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.9e-33  Score=232.62  Aligned_cols=234  Identities=17%  Similarity=0.140  Sum_probs=174.2

Q ss_pred             ccccceeeeccc-CCCCCeeeccchh-----hhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHH
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSWT-----ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLT   77 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~   77 (257)
                      +.++.||+++.. .+..+++|.....     +...... ...........|+|++++.+.+...+..++||||+++++|.
T Consensus         7 g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~   85 (260)
T cd05611           7 GAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVK-AERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLNGGDCA   85 (260)
T ss_pred             CCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHH-HHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccCCCCHH
Confidence            468899999865 4566777765421     1111111 11111223557999999999999999999999999999999


Q ss_pred             HHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcccccCCCCc
Q 044568           78 DIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGY  157 (257)
Q Consensus        78 ~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~  157 (257)
                      +++.  ....+++..+..++.|++.||.|||+.   +++|+||+|.||+++.++.++|+|||++..... .....++..|
T Consensus        86 ~~l~--~~~~~~~~~~~~i~~qi~~aL~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~-~~~~~~~~~y  159 (260)
T cd05611          86 SLIK--TLGGLPEDWAKQYIAEVVLGVEDLHQR---GIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLE-NKKFVGTPDY  159 (260)
T ss_pred             HHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCcEEEeecccceeccc-cccCCCCcCc
Confidence            9997  445789999999999999999999999   999999999999999999999999998875332 2334577889


Q ss_pred             cCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHH
Q 044568          158 MAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVG  237 (257)
Q Consensus       158 ~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  237 (257)
                      ++||.+.+..++.++|+||||+++|++++|..||.....   ........        ......+.......+..+.+++
T Consensus       160 ~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~---~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~i  228 (260)
T cd05611         160 LAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAETP---DAVFDNIL--------SRRINWPEEVKEFCSPEAVDLI  228 (260)
T ss_pred             cChhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCCCH---HHHHHHHH--------hcccCCCCcccccCCHHHHHHH
Confidence            999999888889999999999999999999999964421   11111100        0000001112223457899999


Q ss_pred             HHcccCCCCCCC-hHHHHH
Q 044568          238 LWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       238 ~~cl~~~p~~RP-~~ei~~  255 (257)
                      .+||+.+|.+|| +.++.+
T Consensus       229 ~~~l~~~p~~R~~~~~~~~  247 (260)
T cd05611         229 NRLLCMDPAKRLGANGYQE  247 (260)
T ss_pred             HHHccCCHHHccCCCcHHH
Confidence            999999999999 864443

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=100.00  E-value=7e-34  Score=239.37  Aligned_cols=238  Identities=18%  Similarity=0.165  Sum_probs=174.1

Q ss_pred             ccccceeeecccC-CCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      +.++.||++.... +..+++|...           +.+|++.+.         .+.|+|++++.+.+...+..++||||+
T Consensus        12 g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~---------~l~h~~i~~~~~~~~~~~~~~lv~e~~   82 (286)
T cd07846          12 GSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLK---------QLRHENLVNLIEVFRRKKRLYLVFEFV   82 (286)
T ss_pred             CCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHH---------hcCCcchhhHHHhcccCCeEEEEEecC
Confidence            4578899999764 5666676532           223444444         788999999999999999999999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc---
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF---  148 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~---  148 (257)
                      ++++|..+..  ....+++.++..++.|++.|+.|||++   +++|+|++|+||++++++.++|+|||++.......   
T Consensus        83 ~~~~l~~~~~--~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~  157 (286)
T cd07846          83 DHTVLDDLEK--YPNGLDESRVRKYLFQILRGIEFCHSH---NIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVY  157 (286)
T ss_pred             CccHHHHHHh--ccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEECCCCcEEEEeeeeeeeccCCcccc
Confidence            9999988776  445689999999999999999999999   99999999999999999999999999876532221   


Q ss_pred             ccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHH-------hhhhhhhh-hh
Q 044568          149 VIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYK-------CFINRELN-KL  219 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~  219 (257)
                      ....++..|+|||++.+. .++.++|+||||+++||+++|..||..............+...       ........ ..
T Consensus       158 ~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (286)
T cd07846         158 TDYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDSDIDQLYHIIKCLGNLIPRHQEIFQKNPLFAGM  237 (286)
T ss_pred             CcccceeeccCcHHhccccccCchHhHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHhCCCchhhHHHhccchHhhcc
Confidence            223466779999998754 4678999999999999999999999755321111111111000       00000000 00


Q ss_pred             hcCC--------CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          220 VRGT--------KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       220 ~~~~--------~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ..+.        ......+..+.+++.+||+.+|++|| +.++++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~  282 (286)
T cd07846         238 RLPEVKEIEPLEKRFPKLSGLVLDLAKQCLRIDPDDRPSSSQLLH  282 (286)
T ss_pred             ccccccCcchHHHhCCCcCHHHHHHHHHHhcCCcccchhHHHHhc
Confidence            0000        00112356799999999999999999 999975

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=100.00  E-value=3.8e-33  Score=240.60  Aligned_cols=228  Identities=19%  Similarity=0.210  Sum_probs=171.0

Q ss_pred             ccccceeeecccCC--------CCCeeeccc----------hhhhHHHHhHhhhccccccc-cCCceeeeceeeeecCce
Q 044568            4 TKLSNFYRSSFNAR--------NSPWISRVS----------WTADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVS   64 (257)
Q Consensus         4 ~~~~~~y~~~~~~~--------~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~   64 (257)
                      +.++.||++.....        ..+++|...          +.+|++++.         ++ .|+|++++.+.+...+..
T Consensus        23 G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~---------~l~~h~~iv~~~~~~~~~~~~   93 (334)
T cd05100          23 GCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMK---------MIGKHKNIINLLGACTQDGPL   93 (334)
T ss_pred             ccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHH---------hhcCCCCeeeeeEEEccCCce
Confidence            46889998864321        134555433          223333333         66 699999999999999999


Q ss_pred             eEEEeecCCCCHHHHHhccC--------------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCC
Q 044568           65 GKIERPVRNGSLTDIIFCSA--------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF  130 (257)
Q Consensus        65 ~lV~E~~~~gsL~~~l~~~~--------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~  130 (257)
                      ++||||+++|+|.+++....              ...+++.++..++.|++.||.|||++   +++|+||+|+||+++.+
T Consensus        94 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~---givH~dlkp~Nill~~~  170 (334)
T cd05100          94 YVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQ---KCIHRDLAARNVLVTED  170 (334)
T ss_pred             EEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHC---CeeccccccceEEEcCC
Confidence            99999999999999997421              23578889999999999999999999   99999999999999999


Q ss_pred             CceEEeeecccccCCCCc-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHH
Q 044568          131 WTAKILDFGLAKLPNEDF-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILT  204 (257)
Q Consensus       131 ~~~kl~dfg~~~~~~~~~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~  204 (257)
                      +.++|+|||+++......     ....++..|+|||.+.+..++.++||||||+++|||++ |..||.....  ..    
T Consensus       171 ~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~--~~----  244 (334)
T cd05100         171 NVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPV--EE----  244 (334)
T ss_pred             CcEEECCcccceecccccccccccCCCcCceEcCHHHhccCCcCchhhhHHHHHHHHHHHhcCCCCCCCCCH--HH----
Confidence            999999999987543221     11222356999999988889999999999999999998 8888864311  10    


Q ss_pred             HHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          205 NWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                       +.... ...      .....+...+..+.+++.+||+.+|++|| +.|+++.|
T Consensus       245 -~~~~~-~~~------~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ell~~l  290 (334)
T cd05100         245 -LFKLL-KEG------HRMDKPANCTHELYMIMRECWHAVPSQRPTFKQLVEDL  290 (334)
T ss_pred             -HHHHH-HcC------CCCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHHHHH
Confidence             10000 000      00122334456789999999999999999 99998764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=100.00  E-value=4.3e-33  Score=235.38  Aligned_cols=237  Identities=15%  Similarity=0.174  Sum_probs=172.9

Q ss_pred             ccccceeeeccc-CCCCCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +.++.||+++.. +++.+++|...          +.+|++.+.         ++.|+|++++.+.+...+..++||||++
T Consensus        16 g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~i~~~~~~~~~~~~~~lv~e~~~   86 (291)
T cd07844          16 GSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLK---------DLKHANIVTLHDIIHTKKTLTLVFEYLD   86 (291)
T ss_pred             cCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHh---------hCCCcceeeEEEEEecCCeEEEEEecCC
Confidence            567899999976 45667777643          233555555         8889999999999999999999999998


Q ss_pred             CCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---cc
Q 044568           73 NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---FV  149 (257)
Q Consensus        73 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~~  149 (257)
                       ++|.+++.. ....+++..+..++.|+++||.|||++   +++|+||+|+||+++.++.++|+|||.++.....   ..
T Consensus        87 -~~L~~~~~~-~~~~~~~~~~~~~~~ql~~al~~lH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~  161 (291)
T cd07844          87 -TDLKQYMDD-CGGGLSMHNVRLFLFQLLRGLAYCHQR---RVLHRDLKPQNLLISERGELKLADFGLARAKSVPSKTYS  161 (291)
T ss_pred             -CCHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecccCCHHHEEEcCCCCEEECccccccccCCCCcccc
Confidence             499999875 445789999999999999999999999   9999999999999999999999999987643221   12


Q ss_pred             cccCCCCccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhh-hhhhhhhh--------
Q 044568          150 IDKRDKGYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCF-INRELNKL--------  219 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------  219 (257)
                      ...++..|+|||.+.+ ..++.++|+||+|+++|+|++|..||............. +..... ........        
T Consensus       162 ~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  240 (291)
T cd07844         162 NEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGSTDVEDQLHKI-FRVLGTPTEETWPGVSSNPEFKP  240 (291)
T ss_pred             ccccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHH-HHhcCCCChhhhhhhhhcccccc
Confidence            2235677999999875 457899999999999999999999997553211111000 000000 00000000        


Q ss_pred             -----hcCCC-----CCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          220 -----VRGTK-----VDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       220 -----~~~~~-----~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                           ..+..     ........+.+++.+||+.+|++|| +.|+++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~p~~Rps~~e~l~  287 (291)
T cd07844         241 YSFPFYPPRPLINHAPRLDRIPHGEELALKFLQYEPKKRISAAEAMK  287 (291)
T ss_pred             ccccccCChhHHHhCcCCCCchhHHHHHHHHhccCcccccCHHHHhc
Confidence                 00000     0011126778999999999999999 999875

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=100.00  E-value=5.1e-33  Score=231.46  Aligned_cols=239  Identities=20%  Similarity=0.208  Sum_probs=176.0

Q ss_pred             cccccceeeecccC-CCCCeeeccch---hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHH
Q 044568            3 CTKLSNFYRSSFNA-RNSPWISRVSW---TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTD   78 (257)
Q Consensus         3 ~~~~~~~y~~~~~~-~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~   78 (257)
                      .+.++.||++...+ +...++|....   ....+.+....  ..+..+.|+|++++.+.+...+..++|||++++++|.+
T Consensus        11 ~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~--~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~~~~~~l~~   88 (267)
T cd06610          11 VGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEV--QAMSQCNHPNVVKYYTSFVVGDELWLVMPYLSGGSLLD   88 (267)
T ss_pred             CCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHH--HHHHhcCCCCEEEEEEEEeeCCEEEEEEeccCCCcHHH
Confidence            35678999999654 44556665432   11111111000  02337889999999999999999999999999999999


Q ss_pred             HHhccCC-CCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-------cc
Q 044568           79 IIFCSAE-RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-------VI  150 (257)
Q Consensus        79 ~l~~~~~-~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-------~~  150 (257)
                      ++..... ..+++..+..++.|++.|+.|||++   +++|+|++|+||++++++.++|+|||++.......       ..
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~~---~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~  165 (267)
T cd06610          89 IMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSN---GQIHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKT  165 (267)
T ss_pred             HHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHhEEEcCCCCEEEcccchHHHhccCcccccccccc
Confidence            9975333 5789999999999999999999999   99999999999999999999999999876543322       22


Q ss_pred             ccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHH
Q 044568          151 DKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKN  229 (257)
Q Consensus       151 ~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (257)
                      ..++..|++||.+... .++.++|+||||+++|||++|+.||.......   .......     .. .............
T Consensus       166 ~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~---~~~~~~~-----~~-~~~~~~~~~~~~~  236 (267)
T cd06610         166 FVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYPPMK---VLMLTLQ-----ND-PPSLETGADYKKY  236 (267)
T ss_pred             ccCChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCccccChhh---hHHHHhc-----CC-CCCcCCccccccc
Confidence            2467789999998876 68899999999999999999999997542211   1111000     00 0001110111244


Q ss_pred             HHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          230 LENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       230 ~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ...+.+++.+||+.||++|| +.++++
T Consensus       237 ~~~~~~li~~~l~~~p~~Rp~~~~ll~  263 (267)
T cd06610         237 SKSFRKMISLCLQKDPSKRPTAEELLK  263 (267)
T ss_pred             cHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence            57789999999999999999 999975

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=100.00  E-value=4.4e-33  Score=234.41  Aligned_cols=235  Identities=16%  Similarity=0.125  Sum_probs=172.8

Q ss_pred             ccccceeeecccC-CCCCeeeccch-----hh-hHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCH
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW-----TA-DIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSL   76 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~-----~~-~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL   76 (257)
                      +.++.||++.... +..+++|...-     .. +.........-.......|++++.+...+...+..++||||+++|+|
T Consensus         5 G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L   84 (279)
T cd05633           5 GGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLMNGGDL   84 (279)
T ss_pred             CCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecCCCCCH
Confidence            5689999998754 55566764321     11 11011100000022245689999999999999999999999999999


Q ss_pred             HHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC-CcccccCCC
Q 044568           77 TDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE-DFVIDKRDK  155 (257)
Q Consensus        77 ~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~-~~~~~~~~~  155 (257)
                      .+++.  ....+++.++..++.|++.||.|||++   +++|+||+|+||+++.++.++++|||++..... ......++.
T Consensus        85 ~~~i~--~~~~l~~~~~~~i~~qi~~al~~lH~~---~ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~  159 (279)
T cd05633          85 HYHLS--QHGVFSEKEMRFYATEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTH  159 (279)
T ss_pred             HHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHC---CcCCCCCCHHHEEECCCCCEEEccCCcceeccccCccCcCCCc
Confidence            99997  445699999999999999999999999   999999999999999999999999998864332 223346788


Q ss_pred             CccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHH
Q 044568          156 GYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLV  234 (257)
Q Consensus       156 ~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  234 (257)
                      .|+|||.+.+ ..++.++|+||+|+++||+++|..||......... .....           ....+...+...+..+.
T Consensus       160 ~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~-~~~~~-----------~~~~~~~~~~~~~~~~~  227 (279)
T cd05633         160 GYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKH-EIDRM-----------TLTVNVELPDSFSPELK  227 (279)
T ss_pred             CccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCCCCCcCHH-HHHHH-----------hhcCCcCCccccCHHHH
Confidence            9999999864 45789999999999999999999999754322211 11100           00111123444567889


Q ss_pred             HHHHHcccCCCCCCC------hHHHHH
Q 044568          235 KVGLWCVQDEPALRP------MKCAVM  255 (257)
Q Consensus       235 ~l~~~cl~~~p~~RP------~~ei~~  255 (257)
                      +++.+||+.||.+||      ++|+++
T Consensus       228 ~li~~~l~~~p~~R~~~~~~~~~~~~~  254 (279)
T cd05633         228 SLLEGLLQRDVSKRLGCLGRGAQEVKE  254 (279)
T ss_pred             HHHHHHhcCCHHHhcCCCCCCHHHHHh
Confidence            999999999999998      666654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=100.00  E-value=6.4e-33  Score=231.27  Aligned_cols=231  Identities=16%  Similarity=0.149  Sum_probs=171.0

Q ss_pred             ccccceeeecccC-CCCCeeeccchh-------hhHHHHhHhhhccccccccCCceeeeceeeeec--CceeEEEeecCC
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSWT-------ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT--SVSGKIERPVRN   73 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~~-------~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~--~~~~lV~E~~~~   73 (257)
                      +.++.||++...+ +..+++|.....       .+++.+...  -..+.++.|+|++++.+.+...  ...++||||+++
T Consensus        13 g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E--~~~l~~l~h~~i~~~~~~~~~~~~~~~~~v~e~~~~   90 (265)
T cd06652          13 GAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECE--IQLLKNLLHERIVQYYGCLRDPMERTLSIFMEHMPG   90 (265)
T ss_pred             CCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHH--HHHHHhcCCCCeeeEEeEeccCCCceEEEEEEecCC
Confidence            5678999998654 566777765321       111111100  0123388899999999987763  467899999999


Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC------C
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE------D  147 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~------~  147 (257)
                      ++|.+++..  ...+++.....++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||.+.....      .
T Consensus        91 ~~L~~~l~~--~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~  165 (265)
T cd06652          91 GSIKDQLKS--YGALTENVTRKYTRQILEGVSYLHSN---MIVHRDIKGANILRDSVGNVKLGDFGASKRLQTICLSGTG  165 (265)
T ss_pred             CcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEecCCCCEEECcCccccccccccccccc
Confidence            999999973  35688899999999999999999999   999999999999999999999999998864321      1


Q ss_pred             cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCH
Q 044568          148 FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDK  227 (257)
Q Consensus       148 ~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (257)
                      .....++..|+|||.+.+..++.++|+||||+++||+++|+.||.......   ....          ..........+.
T Consensus       166 ~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~---~~~~----------~~~~~~~~~~~~  232 (265)
T cd06652         166 MKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAEFEAMA---AIFK----------IATQPTNPVLPP  232 (265)
T ss_pred             cccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCCccchHH---HHHH----------HhcCCCCCCCch
Confidence            223456778999999988888999999999999999999999996431110   0000          000000112344


Q ss_pred             HHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          228 KNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       228 ~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .....+..++.+||. +|++|| ++|+++
T Consensus       233 ~~~~~~~~~i~~~l~-~p~~Rp~~~~il~  260 (265)
T cd06652         233 HVSDHCRDFLKRIFV-EAKLRPSADELLR  260 (265)
T ss_pred             hhCHHHHHHHHHHhc-ChhhCCCHHHHhc
Confidence            455678888899984 999999 999985

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=100.00  E-value=5.5e-33  Score=231.71  Aligned_cols=235  Identities=17%  Similarity=0.220  Sum_probs=176.5

Q ss_pred             ccccceeeecc-cCCCCCeeeccchhh--------hHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCC
Q 044568            4 TKLSNFYRSSF-NARNSPWISRVSWTA--------DIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNG   74 (257)
Q Consensus         4 ~~~~~~y~~~~-~~~~~~~i~~~~~~~--------~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~g   74 (257)
                      +.++.||+++. .+++.+++|......        ..+.+.  ..-..+.+++|+|++++.+.+...+..++|+||++++
T Consensus        11 g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~--~e~~~l~~l~h~~iv~~~~~~~~~~~~~~v~e~~~~~   88 (268)
T cd06630          11 GAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALR--KEIRLMARLNHPHIIRMLGATCEDSHFNLFVEWMAGG   88 (268)
T ss_pred             cCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHH--HHHHHHHHcCCCceehhhceeccCCeEEEEEeccCCC
Confidence            46788999985 445666776654211        111111  0011333789999999999999999999999999999


Q ss_pred             CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCC-ceEEeeecccccCCCCc-----
Q 044568           75 SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW-TAKILDFGLAKLPNEDF-----  148 (257)
Q Consensus        75 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~-~~kl~dfg~~~~~~~~~-----  148 (257)
                      +|.+++.  ....+++.....++.|++.||.|||++   +++|+||+|+||+++.++ .++|+|||.+.......     
T Consensus        89 ~L~~~l~--~~~~~~~~~~~~~~~ql~~al~~LH~~---~i~H~~i~~~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~  163 (268)
T cd06630          89 SVSHLLS--KYGAFKEAVIINYTEQLLRGLSYLHEN---QIIHRDVKGANLLIDSTGQRLRIADFGAAARLAAKGTGAGE  163 (268)
T ss_pred             cHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEEcccccccccccccccCCc
Confidence            9999997  345788999999999999999999999   999999999999998765 59999999876543221     


Q ss_pred             --ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCC
Q 044568          149 --VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVD  226 (257)
Q Consensus       149 --~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (257)
                        ....++..|+|||.+.+..++.++|+||+|+++|++++|..||.............          ...........+
T Consensus       164 ~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~----------~~~~~~~~~~~~  233 (268)
T cd06630         164 FQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSNHLALIF----------KIASATTAPSIP  233 (268)
T ss_pred             cccccccccceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCcchHHHHH----------HHhccCCCCCCc
Confidence              12346778999999988888999999999999999999999997542211111000          001111122345


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          227 KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       227 ~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ....+.+.+++.+||+.+|.+|| +.|+++
T Consensus       234 ~~~~~~~~~~i~~~l~~~p~~R~~~~~ll~  263 (268)
T cd06630         234 EHLSPGLRDVTLRCLELQPEDRPPSRELLK  263 (268)
T ss_pred             hhhCHHHHHHHHHHcCCCcccCcCHHHHhc
Confidence            55667899999999999999999 999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=100.00  E-value=6.8e-33  Score=241.34  Aligned_cols=232  Identities=16%  Similarity=0.119  Sum_probs=168.7

Q ss_pred             ccccceeeeccc-CCCCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeecC------cee
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTS------VSG   65 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~------~~~   65 (257)
                      +.++.||++... .+..+++|....           .+|++.+         ..+.|+|++++.+.+...+      ..+
T Consensus        32 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l---------~~l~h~niv~~~~~~~~~~~~~~~~~~~  102 (359)
T cd07876          32 GAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLL---------KCVNHKNIISLLNVFTPQKSLEEFQDVY  102 (359)
T ss_pred             CCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHH---------HhCCCCCEeeeeeeeccCCCccccceeE
Confidence            568899999864 456677776531           2233333         3788999999999876543      468


Q ss_pred             EEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC
Q 044568           66 KIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN  145 (257)
Q Consensus        66 lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~  145 (257)
                      +||||+++ +|.+.+.    ..++...+..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++....
T Consensus       103 lv~e~~~~-~l~~~~~----~~~~~~~~~~~~~qi~~~L~~LH~~---~ivHrDlkp~NIl~~~~~~~kl~Dfg~a~~~~  174 (359)
T cd07876         103 LVMELMDA-NLCQVIH----MELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAC  174 (359)
T ss_pred             EEEeCCCc-CHHHHHh----ccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEEecCCCccccc
Confidence            99999975 6777764    2478889999999999999999999   99999999999999999999999999987532


Q ss_pred             CC--cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhh---------hhh
Q 044568          146 ED--FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCF---------INR  214 (257)
Q Consensus       146 ~~--~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~---------~~~  214 (257)
                      ..  .....+|..|+|||.+.+..++.++||||+|+++|+|++|+.||........   +........         ...
T Consensus       175 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~tg~~pf~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  251 (359)
T cd07876         175 TNFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGTDHIDQ---WNKVIEQLGTPSAEFMNRLQP  251 (359)
T ss_pred             cCccCCCCcccCCCCCchhccCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHH---HHHHHHhcCCCcHHHHHHHHH
Confidence            22  2344678889999999988899999999999999999999999985532111   000000000         000


Q ss_pred             hhhhh---------------hcCC------CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          215 ELNKL---------------VRGT------KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       215 ~~~~~---------------~~~~------~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .....               ....      .........+.+++.+||+.||++|| +.|+++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~  314 (359)
T cd07876         252 TVRNYVENRPQYPGISFEELFPDWIFPSESERDKLKTSQARDLLSKMLVIDPDKRISVDEALR  314 (359)
T ss_pred             HHHHHHhhCCCCCCcchhhhccccccccccccccccchhHHHHHHHHhccCcccCCCHHHHhc
Confidence            00000               0000      01111235688999999999999999 999975

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=100.00  E-value=9e-34  Score=227.29  Aligned_cols=192  Identities=21%  Similarity=0.235  Sum_probs=158.3

Q ss_pred             ccCCceeeeceeeeecCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCce
Q 044568           46 IRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNI  125 (257)
Q Consensus        46 ~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~ni  125 (257)
                      ..||+|+.+.+........++|+|.|+.|.|.|+|.  +..++++...+.++.|+.+|+.|||.+   +|+|||+||+||
T Consensus        80 ~GHP~II~l~D~yes~sF~FlVFdl~prGELFDyLt--s~VtlSEK~tR~iMrqlfegVeylHa~---~IVHRDLKpENI  154 (411)
T KOG0599|consen   80 MGHPYIIDLQDVYESDAFVFLVFDLMPRGELFDYLT--SKVTLSEKETRRIMRQLFEGVEYLHAR---NIVHRDLKPENI  154 (411)
T ss_pred             cCCCcEEEeeeeccCcchhhhhhhhcccchHHHHhh--hheeecHHHHHHHHHHHHHHHHHHHHh---hhhhcccChhhe
Confidence            359999999999999999999999999999999998  778899999999999999999999999   999999999999


Q ss_pred             eeCCCCceEEeeecccccCC--CCcccccCCCCccCcccccC------CCCCccccchhHHHHHHHHHhcCCCCCcCCCC
Q 044568          126 LMDEFWTAKILDFGLAKLPN--EDFVIDKRDKGYMAPECYKR------TPISVKADVYGYGIVLLETICCRKNMEIDASK  197 (257)
Q Consensus       126 l~~~~~~~kl~dfg~~~~~~--~~~~~~~~~~~~~aPE~~~~------~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~  197 (257)
                      |++++.+++|+|||++....  ......+||++|+|||.+..      ..|+...|+||+|+++|.++.|.+||--.   
T Consensus       155 Llddn~~i~isDFGFa~~l~~GekLrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwHR---  231 (411)
T KOG0599|consen  155 LLDDNMNIKISDFGFACQLEPGEKLRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFWHR---  231 (411)
T ss_pred             eeccccceEEeccceeeccCCchhHHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCchhHH---
Confidence            99999999999999987644  33467799999999999863      35889999999999999999999999522   


Q ss_pred             hhhHHHHHHHHHh--hhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          198 PEEIILTNWVYKC--FINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       198 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ..-..++....-.  +.+          +...+......+|+.+||+.||.+|- ++|.++
T Consensus       232 kQmlMLR~ImeGkyqF~s----------peWadis~~~KdLIsrlLqVdp~~Ritake~La  282 (411)
T KOG0599|consen  232 KQMLMLRMIMEGKYQFRS----------PEWADISATVKDLISRLLQVDPTKRITAKEALA  282 (411)
T ss_pred             HHHHHHHHHHhcccccCC----------cchhhccccHHHHHHHHHeeCchhcccHHHHhc
Confidence            1111111111000  111          22333456788999999999999999 998864

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=100.00  E-value=4.3e-33  Score=237.24  Aligned_cols=234  Identities=16%  Similarity=0.155  Sum_probs=171.8

Q ss_pred             ccccceeeecccCC-CCCeeeccchh-----hhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHH
Q 044568            4 TKLSNFYRSSFNAR-NSPWISRVSWT-----ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLT   77 (257)
Q Consensus         4 ~~~~~~y~~~~~~~-~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~   77 (257)
                      +.++.||++..... ..+++|...-.     +..+.+. .... .+..++|+|++++.+.+...+..++||||+++++|.
T Consensus        12 g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~-~e~~-~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~g~~L~   89 (305)
T cd05609          12 GAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVF-VERD-ILTFAENPFVVSMFCSFETKRHLCMVMEYVEGGDCA   89 (305)
T ss_pred             CCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHH-HHHH-HHHhCCCCCeeeeEEEEecCCEEEEEEecCCCCcHH
Confidence            45778999886554 45667654421     1111111 1111 344788999999999999999999999999999999


Q ss_pred             HHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc---------
Q 044568           78 DIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF---------  148 (257)
Q Consensus        78 ~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~---------  148 (257)
                      +++.  ....+++..+..++.|++.|+.|||++   +++|+|++|.||+++.++.++++|||.++......         
T Consensus        90 ~~l~--~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~NIll~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~  164 (305)
T cd05609          90 TLLK--NIGALPVDMARMYFAETVLALEYLHNY---GIVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMSLTTNLYEGHI  164 (305)
T ss_pred             HHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCchHHEEECCCCCEEEeeCCCccccCcCcccccccccc
Confidence            9997  345789999999999999999999999   99999999999999999999999999876311000         


Q ss_pred             ---------ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhh
Q 044568          149 ---------VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKL  219 (257)
Q Consensus       149 ---------~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (257)
                               ....++..|+|||.+.+..++.++|+||||+++||+++|..||.+....   ......     ...   ..
T Consensus       165 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~~~~~---~~~~~~-----~~~---~~  233 (305)
T cd05609         165 EKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPE---ELFGQV-----ISD---DI  233 (305)
T ss_pred             ccchhhccccCCccCccccCchhccCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH---HHHHHH-----Hhc---cc
Confidence                     1124566799999998888999999999999999999999999744211   111100     000   00


Q ss_pred             hcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHh
Q 044568          220 VRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMM  256 (257)
Q Consensus       220 ~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~  256 (257)
                      ..+ ......+..+.+++.+||+.+|++|| +.++.++
T Consensus       234 ~~~-~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~l  270 (305)
T cd05609         234 EWP-EGDEALPADAQDLISRLLRQNPLERLGTGGAFEV  270 (305)
T ss_pred             CCC-CccccCCHHHHHHHHHHhccChhhccCccCHHHH
Confidence            000 11113456789999999999999999 7665544

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=100.00  E-value=1.2e-32  Score=231.78  Aligned_cols=240  Identities=16%  Similarity=0.111  Sum_probs=177.5

Q ss_pred             cccccceeeecccC-CCCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCc-----ee
Q 044568            3 CTKLSNFYRSSFNA-RNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSV-----SG   65 (257)
Q Consensus         3 ~~~~~~~y~~~~~~-~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~-----~~   65 (257)
                      .+.++.||+++... +..+++|....           .+|++.+.      .+..+.|+|++++.+.+...+.     .+
T Consensus         9 ~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~------~l~~~~h~~i~~~~~~~~~~~~~~~~~~~   82 (287)
T cd07838           9 EGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLK------QLESFEHPNIVRLLDVCHGPRTDRELKLT   82 (287)
T ss_pred             ccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHH------HhhccCCCCcceEEEEEeeccCCCCceeE
Confidence            35688999999875 66777776642           23333333      2335679999999999988776     99


Q ss_pred             EEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC
Q 044568           66 KIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN  145 (257)
Q Consensus        66 lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~  145 (257)
                      ++|||++ ++|.+++.......+++..+..++.|++.||.|||+.   +++|+|++|+||+++.++.++|+|||.+....
T Consensus        83 l~~e~~~-~~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH~~---~i~h~~l~~~nili~~~~~~~l~dfg~~~~~~  158 (287)
T cd07838          83 LVFEHVD-QDLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHSH---RIVHRDLKPQNILVTSDGQVKIADFGLARIYS  158 (287)
T ss_pred             EEehhcc-cCHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCChhhEEEccCCCEEEeccCcceecc
Confidence            9999997 5899988753445799999999999999999999999   99999999999999999999999999887543


Q ss_pred             CCc--ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhh-------
Q 044568          146 EDF--VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINREL-------  216 (257)
Q Consensus       146 ~~~--~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~-------  216 (257)
                      ...  ....++..|+|||.+.+..++.++|+||||+++|||++|..||.......   ....+..........       
T Consensus       159 ~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  235 (287)
T cd07838         159 FEMALTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRGTSEAD---QLDKIFDVIGLPSEEEWPRNVS  235 (287)
T ss_pred             CCcccccccccccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCcccCCChHH---HHHHHHHHcCCCChHhcCCCcc
Confidence            221  23345777999999998889999999999999999999999997553221   111111111000000       


Q ss_pred             --hhhhcCC------CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          217 --NKLVRGT------KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       217 --~~~~~~~------~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                        .......      ....+....+.+++.+||+.||.+|| +.|+++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~il~  283 (287)
T cd07838         236 LPRSSFPSYTPRSFKSFVPEICEEGLDLLKKMLTFNPHKRISAFEALQ  283 (287)
T ss_pred             cchhhcccccccchhhhhhhhhHHHHHHHHHHhccCCccCCCHHHHhc
Confidence              0000000      11123457788999999999999999 999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=100.00  E-value=1.5e-33  Score=242.87  Aligned_cols=238  Identities=12%  Similarity=0.049  Sum_probs=170.1

Q ss_pred             ccccceeeecccCC-CCCeeeccchh---hhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHH
Q 044568            4 TKLSNFYRSSFNAR-NSPWISRVSWT---ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDI   79 (257)
Q Consensus         4 ~~~~~~y~~~~~~~-~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~   79 (257)
                      +.++.||+++...+ ..+++|...-.   ...+...+...........|++++++.+.+...+..++||||+++|+|.++
T Consensus        12 G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~Ey~~gg~L~~~   91 (331)
T cd05624          12 GAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYLVMDYYVGGDLLTL   91 (331)
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEeCCCCCcHHHH
Confidence            56889999996644 44567755321   111111111111133367899999999999999999999999999999999


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc----ccccCCC
Q 044568           80 IFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF----VIDKRDK  155 (257)
Q Consensus        80 l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~----~~~~~~~  155 (257)
                      +.. ....+++..+..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++.......    ....|++
T Consensus        92 l~~-~~~~l~~~~~~~~~~qi~~~L~~lH~~---~iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~  167 (331)
T cd05624          92 LSK-FEDRLPEDMARFYIAEMVLAIHSIHQL---HYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGTVQSSVAVGTP  167 (331)
T ss_pred             HHH-hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCchHHEEEcCCCCEEEEeccceeeccCCCceeeccccCCc
Confidence            975 356789999999999999999999999   99999999999999999999999999987543322    2246889


Q ss_pred             CccCcccccC-----CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHH
Q 044568          156 GYMAPECYKR-----TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNL  230 (257)
Q Consensus       156 ~~~aPE~~~~-----~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (257)
                      .|+|||.+..     ..++.++|+||||+++|||++|+.||........   ....     ....  ...+.........
T Consensus       168 ~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~---~~~i-----~~~~--~~~~~p~~~~~~~  237 (331)
T cd05624         168 DYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAESLVET---YGKI-----MNHE--ERFQFPSHITDVS  237 (331)
T ss_pred             ccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCccCCCHHHH---HHHH-----HcCC--CcccCCCccccCC
Confidence            9999999875     4578899999999999999999999975421110   0000     0000  0000001112235


Q ss_pred             HHHHHHHHHcccCCCCC--CC-hHHHHH
Q 044568          231 ENLVKVGLWCVQDEPAL--RP-MKCAVM  255 (257)
Q Consensus       231 ~~l~~l~~~cl~~~p~~--RP-~~ei~~  255 (257)
                      +.+.+++.+|+..++.+  |+ ++++++
T Consensus       238 ~~~~~li~~ll~~~~~~~~~~~~~~~~~  265 (331)
T cd05624         238 EEAKDLIQRLICSRERRLGQNGIEDFKK  265 (331)
T ss_pred             HHHHHHHHHHccCchhhcCCCCHHHHhc
Confidence            67888888988866554  45 666653

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=100.00  E-value=4.3e-33  Score=237.91  Aligned_cols=233  Identities=13%  Similarity=0.115  Sum_probs=169.9

Q ss_pred             ceeeecccCCCCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCH
Q 044568            8 NFYRSSFNARNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSL   76 (257)
Q Consensus         8 ~~y~~~~~~~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL   76 (257)
                      .+|+++. ++..+++|....           .+|++.+         ..++|+|++++.+.+...+..+++|||+++|+|
T Consensus        17 ~~~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l---------~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~l   86 (314)
T cd08216          17 HLAKHKP-TNTLVAVKKINLDSCSKEDLKLLQQEIITS---------RQLQHPNILPYVTSFIVDSELYVVSPLMAYGSC   86 (314)
T ss_pred             EEEEecC-CCCEEEEEEEeccccchhHHHHHHHHHHHH---------HhcCCcchhhhhheeecCCeEEEEEeccCCCCH
Confidence            4444444 577778887542           2333333         378899999999999999999999999999999


Q ss_pred             HHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---------
Q 044568           77 TDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---------  147 (257)
Q Consensus        77 ~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---------  147 (257)
                      .+++.......+++.....++.|++.||.|||++   +|+|+||+|+||+++.++.++++||+.+......         
T Consensus        87 ~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~---~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~~~~~~~  163 (314)
T cd08216          87 EDLLKTHFPEGLPELAIAFILKDVLNALDYIHSK---GFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQRVVHD  163 (314)
T ss_pred             HHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCcceEEEecCCceEEecCccceeecccccccccccc
Confidence            9999865556789999999999999999999999   9999999999999999999999999977532211         


Q ss_pred             -cccccCCCCccCcccccCC--CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHH---hhhhh-------
Q 044568          148 -FVIDKRDKGYMAPECYKRT--PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYK---CFINR-------  214 (257)
Q Consensus       148 -~~~~~~~~~~~aPE~~~~~--~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~---~~~~~-------  214 (257)
                       .....++..|+|||.+...  .++.++|+||||+++|||++|..||........  ........   .....       
T Consensus       164 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~g~~pf~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  241 (314)
T cd08216         164 FPKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGITACELANGHVPFKDMPATQM--LLEKVRGTVPCLLDKSTYPLYED  241 (314)
T ss_pred             ccccccccccccCHHHhcCCCCCCCcchhHHHHHHHHHHHHhCCCCCCCCCHHHH--HHHHHhccCccccccCchhhhcC
Confidence             1223455679999998763  478999999999999999999999975422111  11100000   00000       


Q ss_pred             hhh-----------hhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          215 ELN-----------KLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       215 ~~~-----------~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ...           ...............+.+++.+||+.||++|| +.|+++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~  294 (314)
T cd08216         242 SMSQSRSSNEHPNNRDSVDHPYTRTFSEHFHQFVELCLQRDPESRPSASQLLN  294 (314)
T ss_pred             CcCcccccccccchhhhhhcchhhHHHHHHHHHHHHHhhcCCCcCcCHHHHhc
Confidence            000           00000012233346788999999999999999 999976

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=100.00  E-value=6.5e-33  Score=231.96  Aligned_cols=229  Identities=16%  Similarity=0.133  Sum_probs=174.0

Q ss_pred             ccccceeeecccCCCCC-eeeccch--hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHHH
Q 044568            4 TKLSNFYRSSFNARNSP-WISRVSW--TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDII   80 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~-~i~~~~~--~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l   80 (257)
                      +.++.||++....+... +++...-  .++.+......      ...|+|++++.+.+...+..++||||+++|+|.+++
T Consensus        27 g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~e~~~~~~------~~~h~~iv~~~~~~~~~~~~~iv~e~~~~~~L~~~l  100 (267)
T PHA03390         27 GKFGKVSVLKHKPTQKLFVQKIIKAKNFNAIEPMVHQL------MKDNPNFIKLYYSVTTLKGHVLIMDYIKDGDLFDLL  100 (267)
T ss_pred             CCceEEEEEEEcCCCcEEEEEEEehhhcchhhHHHHHH------hhcCCCEEEEEEEEecCCeeEEEEEcCCCCcHHHHH
Confidence            45788999886655444 4444331  12222211111      125999999999999999999999999999999999


Q ss_pred             hccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCC-ceEEeeecccccCCCCcccccCCCCccC
Q 044568           81 FCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW-TAKILDFGLAKLPNEDFVIDKRDKGYMA  159 (257)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~-~~kl~dfg~~~~~~~~~~~~~~~~~~~a  159 (257)
                      ..  ...+++.++..++.|++.|+.|||+.   +++|+||+|.||+++.++ .++++|||.+...... ....++..|+|
T Consensus       101 ~~--~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~-~~~~~~~~y~a  174 (267)
T PHA03390        101 KK--EGKLSEAEVKKIIRQLVEALNDLHKH---NIIHNDIKLENVLYDRAKDRIYLCDYGLCKIIGTP-SCYDGTLDYFS  174 (267)
T ss_pred             Hh--cCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEEeCCCCeEEEecCccceecCCC-ccCCCCCcccC
Confidence            74  34899999999999999999999999   999999999999999988 9999999988754432 23467888999


Q ss_pred             cccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHH
Q 044568          160 PECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLW  239 (257)
Q Consensus       160 PE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  239 (257)
                      ||.+.+..++.++|+||+|+++||+++|..||.......  .....+....         .............+.+++.+
T Consensus       175 PE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~--~~~~~~~~~~---------~~~~~~~~~~~~~~~~li~~  243 (267)
T PHA03390        175 PEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDEE--LDLESLLKRQ---------QKKLPFIKNVSKNANDFVQS  243 (267)
T ss_pred             hhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCcch--hhHHHHHHhh---------cccCCcccccCHHHHHHHHH
Confidence            999998889999999999999999999999997442221  1111111110         11112233456789999999


Q ss_pred             cccCCCCCCC-h-HHHHH
Q 044568          240 CVQDEPALRP-M-KCAVM  255 (257)
Q Consensus       240 cl~~~p~~RP-~-~ei~~  255 (257)
                      ||+.+|.+|| . +|+++
T Consensus       244 ~l~~~p~~R~~~~~~~l~  261 (267)
T PHA03390        244 MLKYNINYRLTNYNEIIK  261 (267)
T ss_pred             HhccChhhCCchHHHHhc
Confidence            9999999999 5 88875

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.2e-33  Score=238.31  Aligned_cols=231  Identities=14%  Similarity=0.110  Sum_probs=174.5

Q ss_pred             ccccceeeecccC-CCCCeeeccchhh-----hHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHH
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSWTA-----DIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLT   77 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~   77 (257)
                      +.++.||++.... +..+++|......     ..+.+.  ..-..+..+.|++++++.+.+...+..++||||+.+++|.
T Consensus        12 g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~--~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~   89 (316)
T cd05574          12 GDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVL--TEQEILATLDHPFLPTLYASFQTETYLCLVMDYCPGGELF   89 (316)
T ss_pred             CccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHH--HHHHHHHhCCCCCchhheeeeecCCEEEEEEEecCCCCHH
Confidence            5678999998765 6666777654211     111111  1111333778999999999999999999999999999999


Q ss_pred             HHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc---------
Q 044568           78 DIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF---------  148 (257)
Q Consensus        78 ~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~---------  148 (257)
                      +++.......+++..+..++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||++.......         
T Consensus        90 ~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~  166 (316)
T cd05574          90 RLLQRQPGKCLSEEVARFYAAEVLLALEYLHLL---GIVYRDLKPENILLHESGHIMLSDFDLSKQSDVEPPPVSKALRK  166 (316)
T ss_pred             HHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHC---CeeccCCChHHeEEcCCCCEEEeecchhhccccccccccccccc
Confidence            999754456799999999999999999999999   99999999999999999999999999876432111         


Q ss_pred             -----------------------ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHH
Q 044568          149 -----------------------VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTN  205 (257)
Q Consensus       149 -----------------------~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~  205 (257)
                                             ....++..|+|||.+.+..++.++||||||+++|++++|..||.......   ... 
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~---~~~-  242 (316)
T cd05574         167 GSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTPFKGSNRDE---TFS-  242 (316)
T ss_pred             ccccccccccchhhhcccccCCCCCCcCccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCCCCCCCCchHH---HHH-
Confidence                                   12246777999999998888999999999999999999999997542211   110 


Q ss_pred             HHHHhhhhhhhhhhhcCC---CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          206 WVYKCFINRELNKLVRGT---KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                                  ......   ......+..+.+++.+||+.||++|| ++..++
T Consensus       243 ------------~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~s~~~~~~  284 (316)
T cd05574         243 ------------NILKKEVTFPGSPPVSSSARDLIRKLLVKDPSKRLGSKRGAA  284 (316)
T ss_pred             ------------HHhcCCccCCCccccCHHHHHHHHHHccCCHhHCCCchhhHH
Confidence                        011101   11112467899999999999999999 554443

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=100.00  E-value=8.9e-33  Score=232.52  Aligned_cols=235  Identities=17%  Similarity=0.146  Sum_probs=175.0

Q ss_pred             ccccceeeeccc-CCCCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      +.++.||+++.. ++..+++|....           .+|++.+.         ++.|+|++++.+.+...+..++||||+
T Consensus        11 g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~---------~~~~~~i~~~~~~~~~~~~~~~v~e~~   81 (286)
T cd07832          11 GAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQ---------ACQHPYVVKLLDVFPHGSGFVLVMEYM   81 (286)
T ss_pred             CCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHH---------hCCCCCCcceeeEEecCCeeEEEeccc
Confidence            567889999965 456667766542           23333333         778999999999999999999999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC----
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED----  147 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~----  147 (257)
                       +++|.+++.. ....+++.++..++.|++.||.|||++   +++|+||+|+||+++.++.++++|||.+......    
T Consensus        82 -~~~L~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~  156 (286)
T cd07832          82 -PSDLSEVLRD-EERPLPEAQVKSYMRMLLKGVAYMHAN---GIMHRDLKPANLLISADGVLKIADFGLARLFSEEEPRL  156 (286)
T ss_pred             -CCCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCcCHHHEEEcCCCcEEEeeeeecccccCCCCCc
Confidence             9999999975 446799999999999999999999999   9999999999999999999999999988754432    


Q ss_pred             cccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhh-----hhhh------
Q 044568          148 FVIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCF-----INRE------  215 (257)
Q Consensus       148 ~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~-----~~~~------  215 (257)
                      .....++..|+|||.+.+. .++.++||||+|+++||+++|.+||......   ..+........     ..+.      
T Consensus       157 ~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (286)
T cd07832         157 YSHQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGENDI---EQLAIVFRTLGTPNEETWPGLTSLPD  233 (286)
T ss_pred             cccccCcccccCceeeeccccCCchhHHHHHHHHHHHHHcCCcCcCCCCHH---HHHHHHHHHcCCCChHHHhhccCcch
Confidence            2334567789999998654 4689999999999999999998888654211   11111100000     0000      


Q ss_pred             hhhhhcCC-------CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          216 LNKLVRGT-------KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       216 ~~~~~~~~-------~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .....-+.       ....+....+.+++.+||+.+|++|| ++++++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~l~  281 (286)
T cd07832         234 YNKITFPESKPIPLEEIFPDASPEALDLLKGLLVYDPSKRLSAAEALR  281 (286)
T ss_pred             hhcccCCCCCcchHHHhCCCccHHHHHHHHHHhccChhhCCCHHHHhh
Confidence            00000000       01112347899999999999999999 999975

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=100.00  E-value=3.8e-33  Score=231.14  Aligned_cols=226  Identities=19%  Similarity=0.217  Sum_probs=175.6

Q ss_pred             ccccceeeecccC-CCCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      +.++.||++.... +..+++|....           .+|++.         +.+++|+|++++.+.+...+..++|+||+
T Consensus        11 g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~---------l~~~~h~~i~~~~~~~~~~~~~~lv~e~~   81 (257)
T cd08225          11 GSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVIL---------LAKMKHPNIVTFFASFQENGRLFIVMEYC   81 (257)
T ss_pred             CCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHH---------HHhCCCCChhhhhheeccCCeEEEEEecC
Confidence            5678999999765 45556776543           233333         33888999999999999999999999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCC-ceEEeeecccccCCCCc--
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW-TAKILDFGLAKLPNEDF--  148 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~-~~kl~dfg~~~~~~~~~--  148 (257)
                      ++++|.+++.......+++..+..++.|++.|+.|||++   +++|+|++|+||++++++ .++++|||.+.......  
T Consensus        82 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~~  158 (257)
T cd08225          82 DGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDR---KILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSMEL  158 (257)
T ss_pred             CCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEEcCCCCeEEecccccchhccCCccc
Confidence            999999999764445689999999999999999999999   999999999999998875 46999999886543322  


Q ss_pred             -ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCH
Q 044568          149 -VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDK  227 (257)
Q Consensus       149 -~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (257)
                       ....++..|+|||.+....++.++|+||||+++||+++|..||......       .+...     .......  ....
T Consensus       159 ~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~-------~~~~~-----~~~~~~~--~~~~  224 (257)
T cd08225         159 AYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGNNLH-------QLVLK-----ICQGYFA--PISP  224 (257)
T ss_pred             ccccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCccHH-------HHHHH-----HhcccCC--CCCC
Confidence             2335677899999998888899999999999999999999999644111       01000     0001111  1222


Q ss_pred             HHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          228 KNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       228 ~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .....+.+++.+||+.+|++|| +.|+++
T Consensus       225 ~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~  253 (257)
T cd08225         225 NFSRDLRSLISQLFKVSPRDRPSITSILK  253 (257)
T ss_pred             CCCHHHHHHHHHHhccChhhCcCHHHHhh
Confidence            3446789999999999999999 999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=100.00  E-value=3.5e-33  Score=234.49  Aligned_cols=226  Identities=19%  Similarity=0.220  Sum_probs=174.4

Q ss_pred             ccccceeeecccC-CCCCeeeccch------------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||++.... ++.+++|...-            .+|++.+         .+++|+|++++.+.+...+..++||||
T Consensus         4 g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l---------~~l~~~~i~~~~~~~~~~~~~~lv~e~   74 (277)
T cd05577           4 GGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKIL---------EKVSSRFIVSLAYAFETKDDLCLVMTL   74 (277)
T ss_pred             CCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHH---------HhCCCCCEeeeeeEEecCCeEEEEEec
Confidence            4678999987554 45556664431            2233333         377899999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC--Cc
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE--DF  148 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~--~~  148 (257)
                      +++++|.+++.......+++.++..++.|++.|+.|||++   +++|+||+|+||+++.++.++|+|||.+.....  ..
T Consensus        75 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~---~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~  151 (277)
T cd05577          75 MNGGDLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQR---RIVYRDLKPENVLLDDHGNVRISDLGLAVELKGGKKI  151 (277)
T ss_pred             CCCCcHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEEccCcchhhhccCCcc
Confidence            9999999999864445799999999999999999999999   999999999999999999999999998765332  12


Q ss_pred             ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHH
Q 044568          149 VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKK  228 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (257)
                      ....++..|++||.+.+..++.++|+||+|+++|++++|+.||...........+..        .   ........+..
T Consensus       152 ~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~--------~---~~~~~~~~~~~  220 (277)
T cd05577         152 KGRAGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKEKVEKEELKR--------R---TLEMAVEYPDK  220 (277)
T ss_pred             ccccCCCCcCCHHHhcCCCCCchhhhHHHHHHHHHHhhCCCCCCCCcccccHHHHHh--------c---cccccccCCcc
Confidence            234556789999999888889999999999999999999999975532111111100        0   00111123344


Q ss_pred             HHHHHHHHHHHcccCCCCCCC-hHH
Q 044568          229 NLENLVKVGLWCVQDEPALRP-MKC  252 (257)
Q Consensus       229 ~~~~l~~l~~~cl~~~p~~RP-~~e  252 (257)
                      ..+.+.+++.+||+.||.+|| ++|
T Consensus       221 ~~~~~~~li~~~l~~~p~~R~~~~~  245 (277)
T cd05577         221 FSPEAKDLCEALLQKDPEKRLGCRG  245 (277)
T ss_pred             CCHHHHHHHHHHccCChhHccCCCc
Confidence            567889999999999999999 777

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=5.2e-33  Score=241.28  Aligned_cols=226  Identities=16%  Similarity=0.162  Sum_probs=185.2

Q ss_pred             ccccceeeecccC-CCCCeeeccc------------hhhhHHHHhHhhhcccccccc-CCceeeeceeeeecCceeEEEe
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS------------WTADIEVLSVAMRGSKCTRIR-GGLLLNVPVRAKLTSVSGKIER   69 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~------------~~~~~~~~~~~~~~~~~~~~~-h~~i~~~~~~~~~~~~~~lV~E   69 (257)
                      ++|+.||+..... ++..++|.+.            ..+|++.+.         ++. |+|++.+...+...+..++|||
T Consensus        46 G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~---------~l~~hpniv~l~~~~e~~~~~~lvmE  116 (382)
T KOG0032|consen   46 GQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQ---------QLSGHPNIVQLKDAFEDPDSVYLVME  116 (382)
T ss_pred             CCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHH---------hccCCCCEEEEEEEEEcCCeEEEEEE
Confidence            5799999999877 6666765432            356666666         666 9999999999999999999999


Q ss_pred             ecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCC----CceEEeeecccccCC
Q 044568           70 PVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF----WTAKILDFGLAKLPN  145 (257)
Q Consensus        70 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~----~~~kl~dfg~~~~~~  145 (257)
                      +|.||.|.+.+...   .+++.++..++.|++.|+.|||+.   |++|||+||+|+|+...    +.+|++|||++....
T Consensus       117 L~~GGeLfd~i~~~---~~sE~da~~~~~~il~av~~lH~~---gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~  190 (382)
T KOG0032|consen  117 LCEGGELFDRIVKK---HYSERDAAGIIRQILEAVKYLHSL---GVVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIK  190 (382)
T ss_pred             ecCCchHHHHHHHc---cCCHHHHHHHHHHHHHHHHHHHhC---CceeccCCHHHeeeccccCCCCcEEEeeCCCceEcc
Confidence            99999999999863   499999999999999999999999   99999999999999743    479999999998765


Q ss_pred             C--CcccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC
Q 044568          146 E--DFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  223 (257)
Q Consensus       146 ~--~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (257)
                      .  ......||+.|+|||.+....|+..+|+||+|+++|.|++|.+||....+......+.        ..++   --..
T Consensus       191 ~~~~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~~~~~~~~i~--------~~~~---~f~~  259 (382)
T KOG0032|consen  191 PGERLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFWGETEFEIFLAIL--------RGDF---DFTS  259 (382)
T ss_pred             CCceEeeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCcCCChhHHHHHHH--------cCCC---CCCC
Confidence            5  4577899999999999999999999999999999999999999998774332221110        0111   0011


Q ss_pred             CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          224 KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       224 ~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ...........+++..++..||.+|+ +.++++
T Consensus       260 ~~w~~is~~akd~i~~ll~~dp~~R~ta~~~L~  292 (382)
T KOG0032|consen  260 EPWDDISESAKDFIRKLLEFDPRKRLTAAQALQ  292 (382)
T ss_pred             CCccccCHHHHHHHHHhcccCcccCCCHHHHhc
Confidence            33444567889999999999999999 999875

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=100.00  E-value=8.1e-33  Score=233.24  Aligned_cols=227  Identities=21%  Similarity=0.214  Sum_probs=176.7

Q ss_pred             ccccceeeeccc-CCCCCeeeccch--------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCC
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW--------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNG   74 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~--------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~g   74 (257)
                      +.++.||++... ++..+++|....        .+|++.+.         ++.|+|++++.+.+...+..++|+||++++
T Consensus        30 g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~---------~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~  100 (286)
T cd06614          30 GASGEVYKATDRATGKEVAIKKMRLRKQNKELIINEILIMK---------DCKHPNIVDYYDSYLVGDELWVVMEYMDGG  100 (286)
T ss_pred             CCCeEEEEEEEccCCcEEEEEEEecCchhHHHHHHHHHHHH---------HCCCCCeeEEEEEEEECCEEEEEEeccCCC
Confidence            467889999987 455566765543        23333333         888999999999999999999999999999


Q ss_pred             CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---cccc
Q 044568           75 SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---FVID  151 (257)
Q Consensus        75 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~~~~  151 (257)
                      +|.+++.. ....+++..+..++.|++.||.|||+.   +++|+|++|+||+++.++.++|+|||.+......   ....
T Consensus       101 ~L~~~l~~-~~~~l~~~~~~~i~~~i~~~L~~lH~~---gi~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~  176 (286)
T cd06614         101 SLTDIITQ-NFVRMNEPQIAYVCREVLQGLEYLHSQ---NVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKSKRNSV  176 (286)
T ss_pred             cHHHHHHH-hccCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCChhhEEEcCCCCEEECccchhhhhccchhhhccc
Confidence            99999985 224799999999999999999999999   9999999999999999999999999987643322   1233


Q ss_pred             cCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHH
Q 044568          152 KRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLE  231 (257)
Q Consensus       152 ~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (257)
                      .++..|++||.+.+..++.++|+||||+++|++++|..||.......   ....+.         .........+...+.
T Consensus       177 ~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~~~~~---~~~~~~---------~~~~~~~~~~~~~~~  244 (286)
T cd06614         177 VGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPPLR---ALFLIT---------TKGIPPLKNPEKWSP  244 (286)
T ss_pred             cCCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCHHH---HHHHHH---------hcCCCCCcchhhCCH
Confidence            46778999999988889999999999999999999999996441111   000000         000111111222456


Q ss_pred             HHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          232 NLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       232 ~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .+.+++.+||+.+|.+|| +.++++
T Consensus       245 ~l~~li~~~l~~~p~~Rpt~~~il~  269 (286)
T cd06614         245 EFKDFLNKCLVKDPEKRPSAEELLQ  269 (286)
T ss_pred             HHHHHHHHHhccChhhCcCHHHHhh
Confidence            789999999999999999 999975

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=100.00  E-value=5.2e-33  Score=231.48  Aligned_cols=228  Identities=21%  Similarity=0.263  Sum_probs=175.8

Q ss_pred             ccccceeeecccC-CCCCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +.++.||++.... +..+++|...          +.+|++.+.         ++.|+|++++.+.+...+..++|+||++
T Consensus        12 g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~---------~~~~~~i~~~~~~~~~~~~~~lv~e~~~   82 (265)
T cd06605          12 GNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILH---------KCNSPYIVGFYGAFYNNGDISICMEYMD   82 (265)
T ss_pred             CCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHH---------HCCCCchhhhheeeecCCEEEEEEEecC
Confidence            5678999999875 4445666433          222333333         7779999999999999999999999999


Q ss_pred             CCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhh-CCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-cc
Q 044568           73 NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHD-ECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-VI  150 (257)
Q Consensus        73 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-~~  150 (257)
                      +++|.+++.. ....++......++.|++.|+.|||+ .   +++|+||+|+||+++.++.++|+|||.+....... ..
T Consensus        83 ~~~L~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~lH~~~---~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~~  158 (265)
T cd06605          83 GGSLDKILKE-VQGRIPERILGKIAVAVLKGLTYLHEKH---KIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSLAKT  158 (265)
T ss_pred             CCcHHHHHHH-ccCCCCHHHHHHHHHHHHHHHHHHcCCC---CeecCCCCHHHEEECCCCCEEEeecccchhhHHHHhhc
Confidence            9999999975 33778999999999999999999999 8   99999999999999999999999999876432211 22


Q ss_pred             ccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcC--CCCCHH
Q 044568          151 DKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRG--TKVDKK  228 (257)
Q Consensus       151 ~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  228 (257)
                      ..++..|+|||.+.+..++.++|+||||+++|++++|..||..........  ...         .......  ...+..
T Consensus       159 ~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~--~~~---------~~~~~~~~~~~~~~~  227 (265)
T cd06605         159 FVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPENDPPDGI--FEL---------LQYIVNEPPPRLPSG  227 (265)
T ss_pred             ccCChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCccccccccH--HHH---------HHHHhcCCCCCCChh
Confidence            566778999999988889999999999999999999999997542211110  000         0111111  111222


Q ss_pred             -HHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          229 -NLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       229 -~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                       ....+.+++.+||..+|++|| +.|+++
T Consensus       228 ~~~~~~~~li~~~l~~~p~~Rpt~~~ll~  256 (265)
T cd06605         228 KFSPDFQDFVNLCLIKDPRERPSYKELLE  256 (265)
T ss_pred             hcCHHHHHHHHHHcCCCchhCcCHHHHhh
Confidence             556789999999999999999 999975

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=100.00  E-value=6.9e-33  Score=233.44  Aligned_cols=238  Identities=17%  Similarity=0.149  Sum_probs=175.4

Q ss_pred             ccccceeeecccC-CCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      +.++.||++.... ++.+++|...           +.+|++.+.         ++.|+|++++.+.+...+..++||||+
T Consensus        12 g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~---------~l~~~~i~~~~~~~~~~~~~~iv~e~~   82 (288)
T cd07833          12 GAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLR---------QLRHENIVNLKEAFRRKGRLYLVFEYV   82 (288)
T ss_pred             cCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHH---------hcCCCCeeehhheEEECCEEEEEEecC
Confidence            5678899998765 4556676543           234444444         788999999999999999999999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc---
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF---  148 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~---  148 (257)
                      +++.+..+..  ....+++.++..++.|++.|+.|||++   +++|+|++|+||++++++.++|+|||.+.......   
T Consensus        83 ~~~~l~~~~~--~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~~~~~  157 (288)
T cd07833          83 ERTLLELLEA--SPGGLPPDAVRSYIWQLLQAIAYCHSH---NIIHRDIKPENILVSESGVLKLCDFGFARALRARPASP  157 (288)
T ss_pred             CCCHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCCEEEEeeecccccCCCcccc
Confidence            9877766665  456689999999999999999999999   99999999999999999999999999987543322   


Q ss_pred             -ccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHH-------hh-hhhhhh-
Q 044568          149 -VIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYK-------CF-INRELN-  217 (257)
Q Consensus       149 -~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~-------~~-~~~~~~-  217 (257)
                       ....++..|+|||++... .++.++|+||||+++|++++|..||..................       .+ ...... 
T Consensus       158 ~~~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (288)
T cd07833         158 LTDYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGDSDIDQLYLIQKCLGPLPPSHQELFSSNPRFAG  237 (288)
T ss_pred             ccCcccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHhhhcccCccccc
Confidence             234556779999999887 7889999999999999999999999754221111111000000       00 000000 


Q ss_pred             ----hhhcCC----CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          218 ----KLVRGT----KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       218 ----~~~~~~----~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                          +.....    ..+...+..+.+++.+||+.+|++|| ++++++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  284 (288)
T cd07833         238 VAFPEPSQPESLERRYPGKVSSPALDFLKACLRMDPKERLTCDELLQ  284 (288)
T ss_pred             cccCCCCCcHHHHHhcCCccchHHHHHHHHHhccCchhcccHHHHhc
Confidence                000000    11222367899999999999999999 999986

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=6.2e-33  Score=232.70  Aligned_cols=227  Identities=19%  Similarity=0.155  Sum_probs=172.5

Q ss_pred             ccccceeeeccc-CCCCCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +.++.+|++... ++..+++|...          +.+|++.+.      .+....|+|++++.+.+...+..++||||++
T Consensus        12 g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~------~l~~~~~~~vi~~~~~~~~~~~~~lv~e~~~   85 (277)
T cd06917          12 GAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLS------QLRQSQPPNITKYYGSYLKGPRLWIIMEYAE   85 (277)
T ss_pred             cCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHH------HhccCCCCCeeeEeeeeeeCCEEEEEEecCC
Confidence            568899999964 55666777543          223333333      1223349999999999999999999999999


Q ss_pred             CCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---cc
Q 044568           73 NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---FV  149 (257)
Q Consensus        73 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~~  149 (257)
                      +++|.+++..   ..+++..+..++.|++.|+.|||+.   +++|+||+|+||+++.++.++++|||.+......   ..
T Consensus        86 ~~~L~~~~~~---~~l~~~~~~~i~~~i~~~l~~lh~~---~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~  159 (277)
T cd06917          86 GGSVRTLMKA---GPIAEKYISVIIREVLVALKYIHKV---GVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSSKRS  159 (277)
T ss_pred             CCcHHHHHHc---cCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCcCHHHEEEcCCCCEEEccCCceeecCCCccccc
Confidence            9999999863   3789999999999999999999999   9999999999999999999999999988754332   23


Q ss_pred             cccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHH
Q 044568          150 IDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKK  228 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (257)
                      ...++..|+|||.+.++ .++.++|+||||+++|+|++|..||........       ..      .......+......
T Consensus       160 ~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~-------~~------~~~~~~~~~~~~~~  226 (277)
T cd06917         160 TFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDVDAFRA-------MM------LIPKSKPPRLEDNG  226 (277)
T ss_pred             cccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHhCCCCCCCCChhhh-------hh------ccccCCCCCCCccc
Confidence            33567789999998754 468999999999999999999999975421110       00      00000011111112


Q ss_pred             HHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          229 NLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       229 ~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ....+.+++.+||+.||++|| +.|+++
T Consensus       227 ~~~~~~~~i~~~l~~~p~~R~~~~~il~  254 (277)
T cd06917         227 YSKLLREFVAACLDEEPKERLSAEELLK  254 (277)
T ss_pred             CCHHHHHHHHHHcCCCcccCcCHHHHhh
Confidence            456789999999999999999 999875

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=100.00  E-value=3.4e-33  Score=229.63  Aligned_cols=218  Identities=15%  Similarity=0.046  Sum_probs=169.0

Q ss_pred             ccccceeeecccC-CCCCeeeccchhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHHHhc
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSWTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFC   82 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~   82 (257)
                      +.++.||++.... +..+++|......+......     ......|+|++++.+.+...+..++||||+++|+|.+++..
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~   78 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSSEYSRERL-----TIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHISK   78 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchhhhhhHHH-----HHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHHHHHH
Confidence            4567889988654 45567777654322221111     11244589999999999999999999999999999999974


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcccccCCCCccCccc
Q 044568           83 SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMAPEC  162 (257)
Q Consensus        83 ~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~aPE~  162 (257)
                        ...+++.....++.|++.||.|||++   +++|+|++|+||+++.++.++++|||.+...........++..|+|||.
T Consensus        79 --~~~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~y~aPE~  153 (237)
T cd05576          79 --FLNIPEECVKRWAAEMVVALDALHRE---GIVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDSCDGEAVENMYCAPEV  153 (237)
T ss_pred             --hcCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEEcCCCCEEEecccchhccccccccCCcCccccCCcc
Confidence              44689999999999999999999999   9999999999999999999999999987655544444555677999999


Q ss_pred             ccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHccc
Q 044568          163 YKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQ  242 (257)
Q Consensus       163 ~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~  242 (257)
                      .....++.++|+||+|+++||+++|..|+.......                  .. ......+....+.+.+++.+||+
T Consensus       154 ~~~~~~~~~~DvwslG~il~el~~g~~~~~~~~~~~------------------~~-~~~~~~~~~~~~~~~~li~~~l~  214 (237)
T cd05576         154 GGISEETEACDWWSLGAILFELLTGKTLVECHPSGI------------------NT-HTTLNIPEWVSEEARSLLQQLLQ  214 (237)
T ss_pred             cCCCCCCchhhHHHHHHHHHHHHHCcchhhcCchhc------------------cc-ccccCCcccCCHHHHHHHHHHcc
Confidence            988888999999999999999999998875331100                  00 00001223345678899999999


Q ss_pred             CCCCCCC-h
Q 044568          243 DEPALRP-M  250 (257)
Q Consensus       243 ~~p~~RP-~  250 (257)
                      .||.+|| +
T Consensus       215 ~dp~~R~~~  223 (237)
T cd05576         215 FNPTERLGA  223 (237)
T ss_pred             CCHHHhcCC
Confidence            9999999 7

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=100.00  E-value=1.3e-32  Score=226.49  Aligned_cols=227  Identities=20%  Similarity=0.237  Sum_probs=177.9

Q ss_pred             ccccceeeecccC-CCCCeeeccch---------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCC
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW---------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRN   73 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~---------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~   73 (257)
                      +.++.+|++.... +..+++|....         .++++.+.         .+.|++++++.+.+...+..++++||+++
T Consensus        11 g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~---------~l~~~~i~~~~~~~~~~~~~~l~~e~~~~   81 (253)
T cd05122          11 GGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILK---------KCKHPNIVKYYGSYLKKDELWIVMEFCSG   81 (253)
T ss_pred             CCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHH---------hCCCCCEeEEEEEEecCCeEEEEEecCCC
Confidence            5678999999864 55566665443         23333333         77899999999999999999999999999


Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc--ccc
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF--VID  151 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~--~~~  151 (257)
                      ++|.+++.. ....+++..+..++.|++.|+.+||++   +++|+|++|+||++++++.++|+|||.+.......  ...
T Consensus        82 ~~L~~~~~~-~~~~~~~~~~~~i~~~i~~~l~~lh~~---~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~  157 (253)
T cd05122          82 GSLKDLLKS-TNQTLTESQIAYVCKELLKGLEYLHSN---GIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKARNTM  157 (253)
T ss_pred             CcHHHHHhh-cCCCCCHHHHHHHHHHHHHHHHHhhcC---CEecCCCCHHHEEEccCCeEEEeeccccccccccccccce
Confidence            999999975 336799999999999999999999999   99999999999999999999999999887654432  455


Q ss_pred             cCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHH
Q 044568          152 KRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLE  231 (257)
Q Consensus       152 ~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (257)
                      .++..|++||.+....++.++|+||||+++|++++|..||.........   ...         ..........+.....
T Consensus       158 ~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~---~~~---------~~~~~~~~~~~~~~~~  225 (253)
T cd05122         158 VGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSELPPMKAL---FKI---------ATNGPPGLRNPEKWSD  225 (253)
T ss_pred             ecCCcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCchHHHH---HHH---------HhcCCCCcCcccccCH
Confidence            6778899999998888899999999999999999999999754211100   000         0000000011111256


Q ss_pred             HHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          232 NLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       232 ~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .+.+++.+||+.||++|| +.|+++
T Consensus       226 ~~~~~i~~~l~~~p~~R~t~~~~l~  250 (253)
T cd05122         226 EFKDFLKKCLQKNPEKRPTAEQLLK  250 (253)
T ss_pred             HHHHHHHHHccCChhhCCCHHHHhc
Confidence            799999999999999999 999875

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=100.00  E-value=7.6e-33  Score=233.19  Aligned_cols=228  Identities=14%  Similarity=0.094  Sum_probs=169.1

Q ss_pred             ccccceeeecccCC-CCCeeeccc--------hhhhHHHHhHhhhccccccc-cCCceeeeceeee-----ecCceeEEE
Q 044568            4 TKLSNFYRSSFNAR-NSPWISRVS--------WTADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAK-----LTSVSGKIE   68 (257)
Q Consensus         4 ~~~~~~y~~~~~~~-~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~-----~~~~~~lV~   68 (257)
                      +.++.||+++...+ ..+++|...        +.+|++.+.         ++ .|+|++++.+.+.     .++..++||
T Consensus        29 g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~e~~~l~---------~l~~h~~i~~~~~~~~~~~~~~~~~~~lv~   99 (286)
T cd06638          29 GTYGKVFKVLNKKNGSKAAVKILDPIHDIDEEIEAEYNILK---------ALSDHPNVVKFYGMYYKKDVKNGDQLWLVL   99 (286)
T ss_pred             CCCcEEEEEEECCCCceeEEEeeccccchHHHHHHHHHHHH---------HHhcCCCeeeeeeeeeecccCCCCeEEEEE
Confidence            45789999986544 455666543        223333333         55 5999999999874     446789999


Q ss_pred             eecCCCCHHHHHhcc--CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC
Q 044568           69 RPVRNGSLTDIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE  146 (257)
Q Consensus        69 E~~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~  146 (257)
                      ||+++++|.+++...  ....+++..+..++.|++.|+.|||++   +++|+|++|+||+++.++.++|+|||++.....
T Consensus       100 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~  176 (286)
T cd06638         100 ELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVN---KTIHRDVKGNNILLTTEGGVKLVDFGVSAQLTS  176 (286)
T ss_pred             eecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhC---CccccCCCHHhEEECCCCCEEEccCCceeeccc
Confidence            999999999988632  345688899999999999999999999   999999999999999999999999998864332


Q ss_pred             ---CcccccCCCCccCcccccC-----CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhh
Q 044568          147 ---DFVIDKRDKGYMAPECYKR-----TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNK  218 (257)
Q Consensus       147 ---~~~~~~~~~~~~aPE~~~~-----~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (257)
                         ......++..|+|||.+..     ..++.++|+||+|+++||+++|+.||........   ....          ..
T Consensus       177 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~~~~~---~~~~----------~~  243 (286)
T cd06638         177 TRLRRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLADLHPMRA---LFKI----------PR  243 (286)
T ss_pred             CCCccccccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCCCCCCCchhHH---Hhhc----------cc
Confidence               1233467888999999853     3478899999999999999999999975421110   0000          00


Q ss_pred             hhcC-CCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHh
Q 044568          219 LVRG-TKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMM  256 (257)
Q Consensus       219 ~~~~-~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~  256 (257)
                      .... ...+......+.+++.+||+.||++|| +.|+++-
T Consensus       244 ~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~  283 (286)
T cd06638         244 NPPPTLHQPELWSNEFNDFIRKCLTKDYEKRPTVSDLLQH  283 (286)
T ss_pred             cCCCcccCCCCcCHHHHHHHHHHccCCcccCCCHHHHhhc
Confidence            0000 011222345788999999999999999 9999864

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=7e-34  Score=247.91  Aligned_cols=233  Identities=18%  Similarity=0.131  Sum_probs=182.7

Q ss_pred             ccccceeeec-ccCCCCCeeeccch---hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHH
Q 044568            4 TKLSNFYRSS-FNARNSPWISRVSW---TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDI   79 (257)
Q Consensus         4 ~~~~~~y~~~-~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~   79 (257)
                      ++|+-||-+. ..+++.++||+.++   +..-++-++...-.++..++|||++.+-+++-.+...+||||||- ||-.|+
T Consensus        37 GSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWLVMEYCl-GSAsDl  115 (948)
T KOG0577|consen   37 GSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLVMEYCL-GSASDL  115 (948)
T ss_pred             CccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccchHHHHHHHHh-ccHHHH
Confidence            4677777777 45556667988775   122222222222224559999999999999999999999999996 588888


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcccccCCCCccC
Q 044568           80 IFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA  159 (257)
Q Consensus        80 l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~a  159 (257)
                      +.- ..++|.+.+...|+.+.+.||.|||+.   +.+|||||+.|||+++.|.+||+|||.+.. ..+..+..|||.|+|
T Consensus       116 leV-hkKplqEvEIAAi~~gaL~gLaYLHS~---~~IHRDiKAGNILLse~g~VKLaDFGSAsi-~~PAnsFvGTPywMA  190 (948)
T KOG0577|consen  116 LEV-HKKPLQEVEIAAITHGALQGLAYLHSH---NRIHRDIKAGNILLSEPGLVKLADFGSASI-MAPANSFVGTPYWMA  190 (948)
T ss_pred             HHH-HhccchHHHHHHHHHHHHHHHHHHHHh---hHHhhhccccceEecCCCeeeeccccchhh-cCchhcccCCccccc
Confidence            865 567899999999999999999999999   999999999999999999999999998864 345577899999999


Q ss_pred             ccccc---CCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHH
Q 044568          160 PECYK---RTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKV  236 (257)
Q Consensus       160 PE~~~---~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  236 (257)
                      ||++.   .+.|+.++||||+|++..|+.-+++|+.+-+          .....+.-.   .--.|.....+....+.++
T Consensus       191 PEVILAMDEGqYdgkvDvWSLGITCIELAERkPPlFnMN----------AMSALYHIA---QNesPtLqs~eWS~~F~~F  257 (948)
T KOG0577|consen  191 PEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN----------AMSALYHIA---QNESPTLQSNEWSDYFRNF  257 (948)
T ss_pred             hhHheeccccccCCccceeeccchhhhhhhcCCCccCch----------HHHHHHHHH---hcCCCCCCCchhHHHHHHH
Confidence            99875   5789999999999999999999999975331          111111110   0111223356778899999


Q ss_pred             HHHcccCCCCCCC-hHHHHH
Q 044568          237 GLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       237 ~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +..||++-|.+|| .+++++
T Consensus       258 vd~CLqKipqeRptse~ll~  277 (948)
T KOG0577|consen  258 VDSCLQKIPQERPTSEELLK  277 (948)
T ss_pred             HHHHHhhCcccCCcHHHHhh
Confidence            9999999999999 888764

>PHA02882 putative serine/threonine kinase; Provisional

Probab=100.00  E-value=1.1e-32  Score=233.65  Aligned_cols=240  Identities=13%  Similarity=0.088  Sum_probs=169.5

Q ss_pred             ccccceeeecccCC---C-CCeeeccchhh-----hHHHHh-------HhhhccccccccCCceeeeceeeeecC----c
Q 044568            4 TKLSNFYRSSFNAR---N-SPWISRVSWTA-----DIEVLS-------VAMRGSKCTRIRGGLLLNVPVRAKLTS----V   63 (257)
Q Consensus         4 ~~~~~~y~~~~~~~---~-~~~i~~~~~~~-----~~~~~~-------~~~~~~~~~~~~h~~i~~~~~~~~~~~----~   63 (257)
                      +.|+.||+++...+   . ..++|...+.+     +...+.       +.... .+..+.|++++++.+.+....    .
T Consensus        23 G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~~h~~i~~~~~~~~~~~~~~~~  101 (294)
T PHA02882         23 GGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWK-NIHNIDHLGIPKYYGCGSFKRCRMYY  101 (294)
T ss_pred             CCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHH-HhccCCCCCCCcEEEeeeEecCCceE
Confidence            67899999997665   2 33444333222     111110       11111 344678999999988766544    4


Q ss_pred             eeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeeccccc
Q 044568           64 SGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKL  143 (257)
Q Consensus        64 ~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~  143 (257)
                      .++++|++. .++.+.+..  ....++.....++.|++.|+.|||++   +++||||||+||+++.++.++|+|||+++.
T Consensus       102 ~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~i~~qi~~~l~~lH~~---~iiHrDiKp~Nill~~~~~~~l~DFGla~~  175 (294)
T PHA02882        102 RFILLEKLV-ENTKEIFKR--IKCKNKKLIKNIMKDMLTTLEYIHEH---GISHGDIKPENIMVDGNNRGYIIDYGIASH  175 (294)
T ss_pred             EEEEEehhc-cCHHHHHHh--hccCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCcEEEEEcCCcee
Confidence            467888774 477777753  23467888899999999999999999   999999999999999999999999999875


Q ss_pred             CCC----------CcccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhh
Q 044568          144 PNE----------DFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFIN  213 (257)
Q Consensus       144 ~~~----------~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~  213 (257)
                      ...          ......+|+.|+|||...+..++.++||||||+++|||++|+.||................      
T Consensus       176 ~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~~~~~~~~~~------  249 (294)
T PHA02882        176 FIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNGNLIHAAKCD------  249 (294)
T ss_pred             eccCCcccccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCccccchHHHHHhHHH------
Confidence            321          1123368889999999998899999999999999999999999998663332211111110      


Q ss_pred             hhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          214 RELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                       -...+..+......+++.+.+++..||+.+|++|| ++++.+.|
T Consensus       250 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~l~~~~  293 (294)
T PHA02882        250 -FIKRLHEGKIKIKNANKFIYDFIECVTKLSYEEKPDYDALIKIF  293 (294)
T ss_pred             -HHHHhhhhhhccCCCCHHHHHHHHHHHhCCCCCCCCHHHHHHhh
Confidence             00111111111223457799999999999999999 99998864

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=100.00  E-value=5.1e-33  Score=235.61  Aligned_cols=234  Identities=15%  Similarity=0.095  Sum_probs=174.4

Q ss_pred             ccccceeeeccc-CCCCCeeeccchhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHHHhc
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSWTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFC   82 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~   82 (257)
                      +.++.||++... ++..+++|..........-.....-....++.|+|++++.+.+...+..++|+||+++++|.+++.+
T Consensus        30 g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~  109 (293)
T cd06647          30 GASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTE  109 (293)
T ss_pred             CCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEEEecCCCCcHHHHHhh
Confidence            568899999854 4556677765431111100000000123378899999999999999999999999999999999953


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc---ccccCCCCccC
Q 044568           83 SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF---VIDKRDKGYMA  159 (257)
Q Consensus        83 ~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~---~~~~~~~~~~a  159 (257)
                         ..+++.++..++.|++.|+.|||++   +++|+|++|+||+++.++.++|+|||++.......   ....++..|++
T Consensus       110 ---~~l~~~~~~~i~~~l~~al~~LH~~---gi~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~~  183 (293)
T cd06647         110 ---TCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMA  183 (293)
T ss_pred             ---cCCCHHHHHHHHHHHHHHHHHHHhC---CEeeccCCHHHEEEcCCCCEEEccCcceecccccccccccccCChhhcC
Confidence               4588999999999999999999999   99999999999999999999999999876432221   23356777999


Q ss_pred             cccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHH
Q 044568          160 PECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLW  239 (257)
Q Consensus       160 PE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  239 (257)
                      ||.+....++.++|+||||+++|++++|+.||..........   ..    ..     ........+......+.+++.+
T Consensus       184 PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~~~~~~~---~~----~~-----~~~~~~~~~~~~~~~l~~li~~  251 (293)
T cd06647         184 PEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALY---LI----AT-----NGTPELQNPEKLSAIFRDFLNR  251 (293)
T ss_pred             chhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCChhhhee---eh----hc-----CCCCCCCCccccCHHHHHHHHH
Confidence            999988888999999999999999999999997542211100   00    00     0000011223345678899999


Q ss_pred             cccCCCCCCC-hHHHHH
Q 044568          240 CVQDEPALRP-MKCAVM  255 (257)
Q Consensus       240 cl~~~p~~RP-~~ei~~  255 (257)
                      ||+.+|++|| +.+++.
T Consensus       252 ~l~~~p~~Rp~~~~il~  268 (293)
T cd06647         252 CLEMDVEKRGSAKELLQ  268 (293)
T ss_pred             HccCChhhCcCHHHHhc
Confidence            9999999999 999975

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=1.4e-32  Score=232.05  Aligned_cols=236  Identities=22%  Similarity=0.222  Sum_probs=174.3

Q ss_pred             ccccceeeecccC-CCCCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeec--CceeEEEee
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT--SVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~--~~~~lV~E~   70 (257)
                      +.++.||++.... +..+++|...          +.+|++.+.         ++.|+|++++.+.+...  +..++||||
T Consensus        12 g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~---------~l~h~~iv~~~~~~~~~~~~~~~lv~e~   82 (287)
T cd06621          12 GAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINK---------SCKSPYIVKYYGAFLDESSSSIGIAMEY   82 (287)
T ss_pred             CCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHH---------hCCCCCeeeeeeEEEccCCCeEEEEEEe
Confidence            4568899999754 4555666443          234444444         88999999999987654  467999999


Q ss_pred             cCCCCHHHHHhcc--CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc
Q 044568           71 VRNGSLTDIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF  148 (257)
Q Consensus        71 ~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~  148 (257)
                      +++++|.+++...  ....++......++.|++.||.|||+.   +++|+|++|.||+++.++.++|+|||++.......
T Consensus        83 ~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~---~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~  159 (287)
T cd06621          83 CEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSR---KIIHRDIKPSNILLTRKGQVKLCDFGVSGELVNSL  159 (287)
T ss_pred             cCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEecCCeEEEeeccccccccccc
Confidence            9999999987532  345688899999999999999999999   99999999999999999999999999876433222


Q ss_pred             -ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCCh-hhHHHHHHHHHhhhhhhhhhhhcCCCCC
Q 044568          149 -VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKP-EEIILTNWVYKCFINRELNKLVRGTKVD  226 (257)
Q Consensus       149 -~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (257)
                       ....++..|++||.+.+..++.++|+||+|+++|+|++|..||.....+. .......+...    .....+.......
T Consensus       160 ~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  235 (287)
T cd06621         160 AGTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELLSYIVN----MPNPELKDEPGNG  235 (287)
T ss_pred             cccccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccCCCCChHHHHHHHhc----CCchhhccCCCCC
Confidence             23345677999999988889999999999999999999999998653211 11111111111    0000111111111


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          227 KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       227 ~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ....+.+.+++.+||+.+|.+|| +.|+++
T Consensus       236 ~~~~~~~~~li~~~l~~~p~~Rpt~~eil~  265 (287)
T cd06621         236 IKWSEEFKDFIKQCLEKDPTRRPTPWDMLE  265 (287)
T ss_pred             CchHHHHHHHHHHHcCCCcccCCCHHHHHh
Confidence            23457789999999999999999 999976

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=100.00  E-value=1.3e-32  Score=232.62  Aligned_cols=228  Identities=15%  Similarity=0.108  Sum_probs=168.6

Q ss_pred             ccccceeeecccC-CCCCeeeccch--------hhhHHHHhHhhhccccccc-cCCceeeeceeeeec-----CceeEEE
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW--------TADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLT-----SVSGKIE   68 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~--------~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~-----~~~~lV~   68 (257)
                      +.++.||++...+ +..+++|....        .+++..+.         ++ .|+|++++.+.+...     +..++||
T Consensus        33 g~~~~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~---------~l~~h~ni~~~~~~~~~~~~~~~~~~~lv~  103 (291)
T cd06639          33 GTYGKVYKVTNKKDGSLAAVKILDPISDVDEEIEAEYNILQ---------SLPNHPNVVKFYGMFYKADKLVGGQLWLVL  103 (291)
T ss_pred             CCCeEEEEEEECCCCCEEEEEEecccccHHHHHHHHHHHHH---------HhcCCCCeEEEEEEEEeccccCCCeeEEEE
Confidence            4578899998754 44556665532        12222222         44 699999999988754     3579999


Q ss_pred             eecCCCCHHHHHhcc--CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC
Q 044568           69 RPVRNGSLTDIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE  146 (257)
Q Consensus        69 E~~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~  146 (257)
                      ||+++|+|.+++...  ....+++..+..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||++.....
T Consensus       104 ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dlkp~nili~~~~~~kl~dfg~~~~~~~  180 (291)
T cd06639         104 ELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNN---RIIHRDVKGNNILLTTEGGVKLVDFGVSAQLTS  180 (291)
T ss_pred             EECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEEcCCCCEEEeecccchhccc
Confidence            999999999988632  345689999999999999999999999   999999999999999999999999998775332


Q ss_pred             C---cccccCCCCccCcccccCCC-----CCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhh
Q 044568          147 D---FVIDKRDKGYMAPECYKRTP-----ISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNK  218 (257)
Q Consensus       147 ~---~~~~~~~~~~~aPE~~~~~~-----~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (257)
                      .   .....++..|+|||.+....     ++.++|+||||+++||+++|+.||.......   ....+.         ..
T Consensus       181 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~~~~~---~~~~~~---------~~  248 (291)
T cd06639         181 TRLRRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDMHPVK---TLFKIP---------RN  248 (291)
T ss_pred             ccccccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCCCCCCcHHH---HHHHHh---------cC
Confidence            1   12345677899999986432     5789999999999999999999996442111   011100         00


Q ss_pred             hhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          219 LVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       219 ~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .......+......+.+++.+||+.+|++|| +.|+++
T Consensus       249 ~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~il~  286 (291)
T cd06639         249 PPPTLLHPEKWCRSFNHFISQCLIKDFEARPSVTHLLE  286 (291)
T ss_pred             CCCCCCcccccCHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence            0000011233446789999999999999999 999975

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=100.00  E-value=6.6e-33  Score=234.00  Aligned_cols=233  Identities=16%  Similarity=0.139  Sum_probs=173.8

Q ss_pred             ccccceeeeccc-CCCCCeeeccchhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHHHhc
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSWTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFC   82 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~   82 (257)
                      +.++.+|++... ++..+++|..........-........+..+.|+|++++.+.+...+..++|+||+++++|.+++..
T Consensus        30 g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~  109 (285)
T cd06648          30 GSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEFLEGGALTDIVTH  109 (285)
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEeccCCCCHHHHHHh
Confidence            456899999854 4556677765421110000000000123377899999999999999999999999999999999963


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---cccccCCCCccC
Q 044568           83 SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---FVIDKRDKGYMA  159 (257)
Q Consensus        83 ~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~~~~~~~~~~~a  159 (257)
                         ..+++.++..++.|++.|+.|||++   +++|+||+|+||+++.++.++++|||.+......   .....++..|+|
T Consensus       110 ---~~~~~~~~~~~~~ql~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~a  183 (285)
T cd06648         110 ---TRMNEEQIATVCLAVLKALSFLHAQ---GVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMA  183 (285)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCChhhEEEcCCCcEEEcccccchhhccCCcccccccCCccccC
Confidence               5689999999999999999999999   9999999999999999999999999987643221   123357788999


Q ss_pred             cccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC-CCCHHHHHHHHHHHH
Q 044568          160 PECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT-KVDKKNLENLVKVGL  238 (257)
Q Consensus       160 PE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~  238 (257)
                      ||.+.+..++.++|+||||+++||+++|..||.......   ....          ......+. ..+...+..+.+++.
T Consensus       184 PE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~~~~~---~~~~----------~~~~~~~~~~~~~~~~~~l~~li~  250 (285)
T cd06648         184 PEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEPPLQ---AMKR----------IRDNLPPKLKNLHKVSPRLRSFLD  250 (285)
T ss_pred             HHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcCCCHHH---HHHH----------HHhcCCCCCcccccCCHHHHHHHH
Confidence            999988889999999999999999999999996542110   0000          00000000 112224567999999


Q ss_pred             HcccCCCCCCC-hHHHHH
Q 044568          239 WCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       239 ~cl~~~p~~RP-~~ei~~  255 (257)
                      +||+.+|++|| +.++++
T Consensus       251 ~~l~~~p~~Rpt~~~il~  268 (285)
T cd06648         251 RMLVRDPAQRATAAELLN  268 (285)
T ss_pred             HHcccChhhCcCHHHHcc
Confidence            99999999999 999975

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=100.00  E-value=8e-33  Score=230.22  Aligned_cols=221  Identities=18%  Similarity=0.127  Sum_probs=173.2

Q ss_pred             ccccceeeecccC-CCCCeeeccch------------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||+++... +..+++|...-            .+|++.         +.++.|+|++++.+.+..++..++||||
T Consensus         4 g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~---------l~~l~h~~i~~~~~~~~~~~~~~lv~e~   74 (262)
T cd05572           4 GGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEI---------LEECNHPFIVKLYRTFKDKKYIYMLMEY   74 (262)
T ss_pred             CCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHH---------HHhCCCCCEeeeeeeEEcCCccEEEEec
Confidence            5678899999765 55666665431            223333         3388899999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC--c
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED--F  148 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~--~  148 (257)
                      +++++|.+++.+  ...++...+..++.|+++||.|||++   +++|+|++|.||+++.++.++|+|||.+......  .
T Consensus        75 ~~~~~L~~~l~~--~~~l~~~~~~~~~~~i~~~l~~lH~~---~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~~~~  149 (262)
T cd05572          75 CLGGELWTILRD--RGLFDEYTARFYIACVVLAFEYLHNR---GIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQKT  149 (262)
T ss_pred             CCCCcHHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCHHHEEEcCCCCEEEeeCCcccccCccccc
Confidence            999999999973  45689999999999999999999999   9999999999999999999999999998754432  2


Q ss_pred             ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHH
Q 044568          149 VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKK  228 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (257)
                      ....++..|++||.+....++.++|+||+|+++|++++|..||......... ...          ...........+..
T Consensus       150 ~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~-~~~----------~~~~~~~~~~~~~~  218 (262)
T cd05572         150 WTFCGTPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGEDDEDPME-IYN----------DILKGNGKLEFPNY  218 (262)
T ss_pred             ccccCCcCccChhHhcCCCCCChhhhhhhHHHHHHHHhCCCCcCCCCCCHHH-HHH----------HHhccCCCCCCCcc
Confidence            3345677899999998888899999999999999999999999765321110 000          00000111123333


Q ss_pred             HHHHHHHHHHHcccCCCCCCC
Q 044568          229 NLENLVKVGLWCVQDEPALRP  249 (257)
Q Consensus       229 ~~~~l~~l~~~cl~~~p~~RP  249 (257)
                      ....+.+++.+||+.+|.+||
T Consensus       219 ~~~~~~~~i~~~l~~~p~~R~  239 (262)
T cd05572         219 IDKAAKDLIKQLLRRNPEERL  239 (262)
T ss_pred             cCHHHHHHHHHHccCChhhCc
Confidence            467899999999999999999

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=100.00  E-value=8.4e-33  Score=239.40  Aligned_cols=229  Identities=20%  Similarity=0.239  Sum_probs=168.7

Q ss_pred             ccccceeeecc------cCCCCCeeeccch----------hhhHHHHhHhhhccccccc-cCCceeeeceeeeec-Ccee
Q 044568            4 TKLSNFYRSSF------NARNSPWISRVSW----------TADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLT-SVSG   65 (257)
Q Consensus         4 ~~~~~~y~~~~------~~~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~-~~~~   65 (257)
                      +.++.||++..      ..+..+++|...-          .+|++.+.         ++ .|+|++++.+.+... ...+
T Consensus        18 G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~---------~l~~h~niv~~~~~~~~~~~~~~   88 (343)
T cd05103          18 GAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILI---------HIGHHLNVVNLLGACTKPGGPLM   88 (343)
T ss_pred             CccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHH---------hccCCccHhhhcceeecCCCceE
Confidence            56899999863      3455677776531          23443333         55 579999999877654 4678


Q ss_pred             EEEeecCCCCHHHHHhccC-------------------------------------------------------------
Q 044568           66 KIERPVRNGSLTDIIFCSA-------------------------------------------------------------   84 (257)
Q Consensus        66 lV~E~~~~gsL~~~l~~~~-------------------------------------------------------------   84 (257)
                      +||||+++|+|.+++....                                                             
T Consensus        89 lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (343)
T cd05103          89 VIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAEQ  168 (343)
T ss_pred             EEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccchhhhhhh
Confidence            9999999999999986421                                                             


Q ss_pred             ----CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-----ccccCCC
Q 044568           85 ----ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-----VIDKRDK  155 (257)
Q Consensus        85 ----~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-----~~~~~~~  155 (257)
                          ...+++.+...++.|++.||.|||++   +++||||||.||+++.++.++++|||++.......     ....++.
T Consensus       169 ~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~  245 (343)
T cd05103         169 EDLYKKVLTLEDLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPL  245 (343)
T ss_pred             hhhhhccCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCccCeEEEcCCCcEEEEecccccccccCcchhhcCCCCCCc
Confidence                12367888899999999999999999   99999999999999999999999999887532211     1123345


Q ss_pred             CccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHH
Q 044568          156 GYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLV  234 (257)
Q Consensus       156 ~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  234 (257)
                      .|+|||.+.+..++.++|+||||+++||+++ |..||........   ....         ...... ...+....+.+.
T Consensus       246 ~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~---~~~~---------~~~~~~-~~~~~~~~~~~~  312 (343)
T cd05103         246 KWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE---FCRR---------LKEGTR-MRAPDYTTPEMY  312 (343)
T ss_pred             ceECcHHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCccccHH---HHHH---------HhccCC-CCCCCCCCHHHH
Confidence            6999999988889999999999999999997 8999865421111   0000         000000 011222345789


Q ss_pred             HHHHHcccCCCCCCC-hHHHHHhC
Q 044568          235 KVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       235 ~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      +++..||+.+|++|| +.||++.|
T Consensus       313 ~~~~~cl~~~p~~Rps~~eil~~l  336 (343)
T cd05103         313 QTMLDCWHGEPSQRPTFSELVEHL  336 (343)
T ss_pred             HHHHHHccCChhhCcCHHHHHHHH
Confidence            999999999999999 99998764

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=100.00  E-value=5.1e-33  Score=230.88  Aligned_cols=233  Identities=18%  Similarity=0.138  Sum_probs=178.7

Q ss_pred             ccccceeeecccC-CCCCeeeccchh-----hhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHH
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSWT-----ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLT   77 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~   77 (257)
                      +.++.||+++... +..+++|.....     ...+.+. ... ..+.++.|+|++++...+...+..++|+||+++++|.
T Consensus        11 g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~-~e~-~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~   88 (258)
T cd05578          11 GAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVL-NER-RILQELNHPFLVNLWYSFQDEENMYLVVDLLLGGDLR   88 (258)
T ss_pred             CCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHH-HHH-HHHHhCCCCChHHHHHhhcCCCeEEEEEeCCCCCCHH
Confidence            5688999999764 566666654321     1111111 000 1333889999999999999999999999999999999


Q ss_pred             HHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC--cccccCCC
Q 044568           78 DIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED--FVIDKRDK  155 (257)
Q Consensus        78 ~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~--~~~~~~~~  155 (257)
                      +++..  ...+++.++..++.|+++||.|||++   +++|+||+|+||++++++.++|+|||.+......  .....++.
T Consensus        89 ~~l~~--~~~l~~~~~~~~~~~i~~~l~~lh~~---~i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~  163 (258)
T cd05578          89 YHLSQ--KVKFSEEQVKFWICEIVLALEYLHSK---GIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDTLTTSTSGTP  163 (258)
T ss_pred             HHHHh--cCCcCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeEEcCCCCEEEeecccccccCCCccccccCCCh
Confidence            99974  36789999999999999999999999   9999999999999999999999999988754332  23345677


Q ss_pred             CccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHH
Q 044568          156 GYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVK  235 (257)
Q Consensus       156 ~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  235 (257)
                      .|+|||.+.+..++.++|+||+|+++|++++|..||............     .     ....  .....+...+..+.+
T Consensus       164 ~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~-----~-----~~~~--~~~~~~~~~~~~~~~  231 (258)
T cd05578         164 GYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRTIRDQIR-----A-----KQET--ADVLYPATWSTEAID  231 (258)
T ss_pred             hhcCHHHHcccCCCCcccchhhHHHHHHHHhCCCCCCCCCccHHHHHH-----H-----Hhcc--ccccCcccCcHHHHH
Confidence            899999998888899999999999999999999999865332111100     0     0000  122344455688999


Q ss_pred             HHHHcccCCCCCCC-h--HHHHH
Q 044568          236 VGLWCVQDEPALRP-M--KCAVM  255 (257)
Q Consensus       236 l~~~cl~~~p~~RP-~--~ei~~  255 (257)
                      ++.+||+.||.+|| +  +|+++
T Consensus       232 ~i~~~l~~~p~~R~~~~~~~l~~  254 (258)
T cd05578         232 AINKLLERDPQKRLGDNLKDLKN  254 (258)
T ss_pred             HHHHHccCChhHcCCccHHHHhc
Confidence            99999999999999 9  77754

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=9e-33  Score=230.78  Aligned_cols=228  Identities=17%  Similarity=0.158  Sum_probs=170.6

Q ss_pred             ccccceeeecccC-CCCCeeeccch--------hhhHHHHhHhhhccccccc-cCCceeeeceeeeecC------ceeEE
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW--------TADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTS------VSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~--------~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~------~~~lV   67 (257)
                      +.++.+|+++... +...++|....        .+|++.+.         ++ .|+|++++.+.+....      ..++|
T Consensus        17 g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~~~l~---------~~~~h~~i~~~~~~~~~~~~~~~~~~~~lv   87 (275)
T cd06608          17 GTYGKVYKARHKKTGQLVAIKIMDIIEDEEEEIKEEYNILR---------KYSNHPNIATFYGAFIKKNPPGNDDQLWLV   87 (275)
T ss_pred             CCCeEEEEEEECCCCcEEEEEEEecCchhHHHHHHHHHHHH---------HhcCCCChheEEEEEEecCCCCcceEEEEE
Confidence            4678899999754 44556665442        23333333         55 5999999999887644      48999


Q ss_pred             EeecCCCCHHHHHhccC--CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC
Q 044568           68 ERPVRNGSLTDIIFCSA--ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN  145 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~--~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~  145 (257)
                      |||+++++|.+++....  +..+++..+..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||.+....
T Consensus        88 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~---~i~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~  164 (275)
T cd06608          88 MELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHEN---KVIHRDIKGQNILLTKNAEVKLVDFGVSAQLD  164 (275)
T ss_pred             EEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHHHEEEccCCeEEECCCccceecc
Confidence            99999999999987432  56789999999999999999999999   99999999999999999999999999876433


Q ss_pred             CC---cccccCCCCccCcccccC-----CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhh
Q 044568          146 ED---FVIDKRDKGYMAPECYKR-----TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELN  217 (257)
Q Consensus       146 ~~---~~~~~~~~~~~aPE~~~~-----~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (257)
                      ..   .....++..|+|||.+..     ..++.++|+||||+++|++++|..||.......   .....         ..
T Consensus       165 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~---~~~~~---------~~  232 (275)
T cd06608         165 STLGRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCDMHPMR---ALFKI---------PR  232 (275)
T ss_pred             cchhhhcCccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCCCCccccchHH---HHHHh---------hc
Confidence            22   133456778999998753     246788999999999999999999996431111   00000         00


Q ss_pred             hhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          218 KLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       218 ~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ........+......+.+++.+||+.||++|| +.|+++
T Consensus       233 ~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~ll~  271 (275)
T cd06608         233 NPPPTLKSPENWSKKFNDFISECLIKNYEQRPFMEELLE  271 (275)
T ss_pred             cCCCCCCchhhcCHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence            00111122233556889999999999999999 999975

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=100.00  E-value=1.8e-32  Score=227.80  Aligned_cols=227  Identities=19%  Similarity=0.204  Sum_probs=178.2

Q ss_pred             ccccceeeecccC-CCCCeeeccch----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +.++.+|+++... +..+++|....          .++++.         ..++.|+|++++.+.+...+..++||||++
T Consensus        12 g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~---------l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~   82 (264)
T cd06623          12 GSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKT---------LRSCESPYVVKCYGAFYKEGEISIVLEYMD   82 (264)
T ss_pred             cCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHH---------HHhcCCCCeeeEEEEEccCCeEEEEEEecC
Confidence            4578899999775 66667766443          222333         337789999999999999999999999999


Q ss_pred             CCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhh-CCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc---
Q 044568           73 NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHD-ECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF---  148 (257)
Q Consensus        73 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~---  148 (257)
                      +++|.+++..  ...++...+..++.|++.|+.|||+ .   +++|+|++|+||+++.++.++|+|||.+.......   
T Consensus        83 ~~~L~~~l~~--~~~l~~~~~~~~~~~l~~~l~~lh~~~---~~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~~~~~~  157 (264)
T cd06623          83 GGSLADLLKK--VGKIPEPVLAYIARQILKGLDYLHTKR---HIIHRDIKPSNLLINSKGEVKIADFGISKVLENTLDQC  157 (264)
T ss_pred             CCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHhccC---CCccCCCCHHHEEECCCCCEEEccCccceecccCCCcc
Confidence            9999999973  4778999999999999999999999 9   99999999999999999999999999887543322   


Q ss_pred             ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHH
Q 044568          149 VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKK  228 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (257)
                      ....++..|+|||.+....++.++|+||||+++|++++|+.||..............          .... .....+..
T Consensus       158 ~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~----------~~~~-~~~~~~~~  226 (264)
T cd06623         158 NTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQPSFFELMQA----------ICDG-PPPSLPAE  226 (264)
T ss_pred             cceeecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCccccccCHHHHHHH----------HhcC-CCCCCCcc
Confidence            134567789999999888889999999999999999999999976532111000000          0000 00122233


Q ss_pred             -HHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          229 -NLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       229 -~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                       .+..+.+++.+||+.+|++|| +.|+++
T Consensus       227 ~~~~~l~~li~~~l~~~p~~R~~~~~ll~  255 (264)
T cd06623         227 EFSPEFRDFISACLQKDPKKRPSAAELLQ  255 (264)
T ss_pred             cCCHHHHHHHHHHccCChhhCCCHHHHHh
Confidence             567899999999999999999 999986

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=100.00  E-value=1.2e-32  Score=228.68  Aligned_cols=233  Identities=16%  Similarity=0.168  Sum_probs=174.8

Q ss_pred             ccccceeeecccCC-CCCeeeccch----hhhHHHHhHhhhccccccccCCceeeeceeeee--cCceeEEEeecCCCCH
Q 044568            4 TKLSNFYRSSFNAR-NSPWISRVSW----TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL--TSVSGKIERPVRNGSL   76 (257)
Q Consensus         4 ~~~~~~y~~~~~~~-~~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~--~~~~~lV~E~~~~gsL   76 (257)
                      +.++.||++....+ ..+++|....    ....+.+.. .. ..+.++.|+|++++.+.+..  ....+++|||+++++|
T Consensus        11 g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~-e~-~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~e~~~~~~L   88 (265)
T cd08217          11 GSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVS-EV-NILRELKHPNIVRYYDRIIDRSNQTLYIVMEYCEGGDL   88 (265)
T ss_pred             CCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHH-HH-HHHHhcCCCccceeeeeeecCCCCEEEEEehhccCCCH
Confidence            56789999986544 4455665432    111111110 00 12338899999999887653  4567899999999999


Q ss_pred             HHHHhcc--CCCCCCHHHHHHHHHHHHHHHHHHh-----hCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-
Q 044568           77 TDIIFCS--AERNPYWNQRVRIALDVAKGILYLH-----DECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-  148 (257)
Q Consensus        77 ~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh-----~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-  148 (257)
                      .+++...  ....+++..+..++.|++.||.|||     +.   +++|+|++|+||+++.++.++++|||.+....... 
T Consensus        89 ~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~---~i~h~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~  165 (265)
T cd08217          89 AQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGN---TVLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSS  165 (265)
T ss_pred             HHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccC---cceecCCCHHHEEEecCCCEEEecccccccccCCcc
Confidence            9999642  2567899999999999999999999     77   99999999999999999999999999987543322 


Q ss_pred             --ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCC
Q 044568          149 --VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVD  226 (257)
Q Consensus       149 --~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (257)
                        ....++..|+|||.+.+..++.++|+||||+++|++++|+.||....   .......          .... .....+
T Consensus       166 ~~~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~---~~~~~~~----------~~~~-~~~~~~  231 (265)
T cd08217         166 FAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTARN---QLQLASK----------IKEG-KFRRIP  231 (265)
T ss_pred             cccccccCCCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCCcccCcC---HHHHHHH----------HhcC-CCCCCc
Confidence              23467888999999988888999999999999999999999997552   1111100          0000 011234


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          227 KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       227 ~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ...+..+.+++.+||+.+|.+|| +.+|++
T Consensus       232 ~~~~~~~~~l~~~~l~~~p~~Rp~~~~il~  261 (265)
T cd08217         232 YRYSSELNEVIKSMLNVDPDKRPSTEELLQ  261 (265)
T ss_pred             cccCHHHHHHHHHHccCCcccCCCHHHHhh
Confidence            45567899999999999999999 999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=100.00  E-value=6.2e-33  Score=235.19  Aligned_cols=237  Identities=16%  Similarity=0.120  Sum_probs=173.9

Q ss_pred             ccccceeeeccc-CCCCCeeeccch--------------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEE
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW--------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIE   68 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~--------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~   68 (257)
                      +.++.||+|... ++..+++|....              .+|++.+         .++.|+|++++.+.+...+..++||
T Consensus        11 g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l---------~~~~h~~i~~~~~~~~~~~~~~lv~   81 (298)
T cd07841          11 GTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLL---------QELKHPNIIGLLDVFGHKSNINLVF   81 (298)
T ss_pred             ccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHH---------hhcCCCCChhhhheeecCCEEEEEE
Confidence            567899999965 466777776542              1233333         3788999999999999999999999


Q ss_pred             eecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc
Q 044568           69 RPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF  148 (257)
Q Consensus        69 E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~  148 (257)
                      ||+ +|+|.+++.. ....+++..+..++.|+++||.|||++   +++|+||+|+||+++.++.++|+|||++.......
T Consensus        82 e~~-~~~L~~~i~~-~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~  156 (298)
T cd07841          82 EFM-ETDLEKVIKD-KSIVLTPADIKSYMLMTLRGLEYLHSN---WILHRDLKPNNLLIASDGVLKLADFGLARSFGSPN  156 (298)
T ss_pred             ccc-CCCHHHHHhc-cCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCChhhEEEcCCCCEEEccceeeeeccCCC
Confidence            999 8999999975 224799999999999999999999999   99999999999999999999999999987543321


Q ss_pred             ---ccccCCCCccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhh---------h
Q 044568          149 ---VIDKRDKGYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINR---------E  215 (257)
Q Consensus       149 ---~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~---------~  215 (257)
                         ....++..|+|||.+.+ ..++.++|+||||+++||+++|..||................. .....         .
T Consensus       157 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  235 (298)
T cd07841         157 RKMTHQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPFLPGDSDIDQLGKIFEALG-TPTEENWPGVTSLPD  235 (298)
T ss_pred             ccccccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCccccCCccHHHHHHHHHHcC-CCchhhhhhcccccc
Confidence               22344667999998865 4578999999999999999999888865432111111100000 00000         0


Q ss_pred             hhhhhcCC-----CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          216 LNKLVRGT-----KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       216 ~~~~~~~~-----~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ........     .........+.+++.+||+.+|++|| +.|+++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~e~l~  281 (298)
T cd07841         236 YVEFKPFPPTPLKQIFPAASDDALDLLQRLLTLNPNKRITARQALE  281 (298)
T ss_pred             cccccccCCcchhhhcccccHHHHHHHHHHhcCCcccCcCHHHHhh
Confidence            00000000     11123357889999999999999999 999986

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=100.00  E-value=5.9e-33  Score=233.51  Aligned_cols=239  Identities=18%  Similarity=0.141  Sum_probs=174.5

Q ss_pred             ccccceeeeccc-CCCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      +.++.||++... ++..+++|...           +.+|++.+.         ++.|+|++++.+.+...+..++||||+
T Consensus        10 g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~---------~l~~~~iv~~~~~~~~~~~~~iv~e~~   80 (283)
T cd07835          10 GTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLK---------ELNHPNIVRLLDVVHSENKLYLVFEFL   80 (283)
T ss_pred             CCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHH---------hcCCCCccCHhheeccCCeEEEEEecc
Confidence            567899999865 56666677543           234555544         788999999999999999999999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc---
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF---  148 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~---  148 (257)
                      + ++|.+++.......+++..+..++.|++.||.|||++   +++|+|++|+||+++.++.++|+|||.+.......   
T Consensus        81 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~~---~~~H~dl~p~nil~~~~~~~~l~df~~~~~~~~~~~~~  156 (283)
T cd07835          81 D-LDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSH---RVLHRDLKPQNLLIDREGALKLADFGLARAFGVPVRTY  156 (283)
T ss_pred             C-cCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCHHHEEEcCCCcEEEeecccccccCCCcccc
Confidence            5 6999999753335789999999999999999999999   99999999999999999999999999987543221   


Q ss_pred             ccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHH-------HHhh-hhhhhhhh
Q 044568          149 VIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWV-------YKCF-INRELNKL  219 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~  219 (257)
                      ....++..|+|||.+.+. .++.++|+||||+++|++++|+.||................       +... ..++....
T Consensus       157 ~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (283)
T cd07835         157 THEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGDSEIDQLFRIFRTLGTPDEDVWPGVTSLPDYKPT  236 (283)
T ss_pred             CccccccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhhhhhchhhhhh
Confidence            223456779999988654 46889999999999999999999997542211111110000       0000 00000000


Q ss_pred             hc-CC-----CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          220 VR-GT-----KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       220 ~~-~~-----~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .. ..     .........+.+++.+||+.+|++|| ++|+++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~  279 (283)
T cd07835         237 FPKWARQDLSKVVPNLDEDGLDLLSKMLVYDPAKRISAKAALQ  279 (283)
T ss_pred             cccccccchhhhcCCCCHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence            00 00     11122336788999999999999999 999975

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=100.00  E-value=2.5e-32  Score=230.75  Aligned_cols=237  Identities=14%  Similarity=0.166  Sum_probs=171.4

Q ss_pred             ccccceeeeccc-CCCCCeeeccch----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +.++.||++... +++.+++|....          .+|++.+.         .++|+|++++.+.+...+..++||||+.
T Consensus        16 g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~---------~l~h~ni~~~~~~~~~~~~~~lv~e~~~   86 (291)
T cd07870          16 GSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLK---------GLKHANIVLLHDIIHTKETLTFVFEYMH   86 (291)
T ss_pred             cCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHH---------hcCCCCEeEEEEEEecCCeEEEEEeccc
Confidence            467899999754 566777776432          23444444         7889999999999999999999999996


Q ss_pred             CCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---cc
Q 044568           73 NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---FV  149 (257)
Q Consensus        73 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~~  149 (257)
                       ++|.+.+.. ....+++..+..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||+++.....   ..
T Consensus        87 -~~l~~~~~~-~~~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~  161 (291)
T cd07870          87 -TDLAQYMIQ-HPGGLHPYNVRLFMFQLLRGLAYIHGQ---HILHRDLKPQNLLISYLGELKLADFGLARAKSIPSQTYS  161 (291)
T ss_pred             -CCHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChHHEEEcCCCcEEEeccccccccCCCCCCCC
Confidence             688887764 445688888999999999999999999   9999999999999999999999999988643221   23


Q ss_pred             cccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhh-hhh---hhh-------
Q 044568          150 IDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCF-INR---ELN-------  217 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~-~~~---~~~-------  217 (257)
                      ...++..|+|||.+.+. .++.++|+||||+++||+++|..||.......+ .....|..... ...   ...       
T Consensus       162 ~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (291)
T cd07870         162 SEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGVSDVFE-QLEKIWTVLGVPTEDTWPGVSKLPNYKP  240 (291)
T ss_pred             CccccccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCCchhHHH-HHHHHHHHcCCCChhhhhhhhhcccccc
Confidence            33467789999998754 478899999999999999999999975432111 11111110000 000   000       


Q ss_pred             hhhc---CCC-----CCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          218 KLVR---GTK-----VDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       218 ~~~~---~~~-----~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ....   +..     ........+.+++.+|++.||.+|| +.|++.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dp~~R~t~~~~l~  287 (291)
T cd07870         241 EWFLPCKPQQLRVVWKRLSRPPKAEDLASQMLMMFPKDRISAQDALL  287 (291)
T ss_pred             hhccccCCcchhhhccccCCChHHHHHHHHHhCcCcccCcCHHHHhc
Confidence            0000   000     0001245788999999999999999 999874

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=100.00  E-value=4e-32  Score=232.59  Aligned_cols=224  Identities=19%  Similarity=0.173  Sum_probs=172.3

Q ss_pred             ccccceeeeccc-CCCCCeeeccch------------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||+++.. ++..+++|....            .+|++.         +.++.|+|++++.+.+...+..++||||
T Consensus        36 G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~---------l~~l~h~~iv~~~~~~~~~~~~~lv~e~  106 (317)
T cd06635          36 GSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKF---------LQRIKHPNSIEYKGCYLREHTAWLVMEY  106 (317)
T ss_pred             CCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHH---------HHhCCCCCEEEEEEEEeeCCeEEEEEeC
Confidence            567899999965 455666776542            223333         3388899999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCccc
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVI  150 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~~  150 (257)
                      ++ |+|.+.+.. ....+++.++..++.|++.|+.|||++   +++|+||+|+||+++.++.++|+|||++..... ...
T Consensus       107 ~~-g~l~~~~~~-~~~~l~~~~~~~i~~~i~~~l~~lH~~---~i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~~-~~~  180 (317)
T cd06635         107 CL-GSASDLLEV-HKKPLQEVEIAAITHGALQGLAYLHSH---NMIHRDIKAGNILLTEPGQVKLADFGSASIASP-ANS  180 (317)
T ss_pred             CC-CCHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcccEEECCCCCEEEecCCCccccCC-ccc
Confidence            97 588888764 456689999999999999999999999   999999999999999999999999998764332 234


Q ss_pred             ccCCCCccCccccc---CCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCH
Q 044568          151 DKRDKGYMAPECYK---RTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDK  227 (257)
Q Consensus       151 ~~~~~~~~aPE~~~---~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (257)
                      ..++..|+|||.+.   ...++.++|+||||+++|||++|..||.......   ....+.          ....+.....
T Consensus       181 ~~~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~---~~~~~~----------~~~~~~~~~~  247 (317)
T cd06635         181 FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMS---ALYHIA----------QNESPTLQSN  247 (317)
T ss_pred             ccCCccccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCCccHHH---HHHHHH----------hccCCCCCCc
Confidence            46778899999974   3567899999999999999999999986431111   111110          0001111223


Q ss_pred             HHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          228 KNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       228 ~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .....+.+++.+||+.+|.+|| +.++++
T Consensus       248 ~~~~~l~~li~~~l~~~p~~Rpt~~~il~  276 (317)
T cd06635         248 EWSDYFRNFVDSCLQKIPQDRPTSEELLK  276 (317)
T ss_pred             cccHHHHHHHHHHccCCcccCcCHHHHHh
Confidence            3456789999999999999999 999986

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=100.00  E-value=1.4e-32  Score=239.74  Aligned_cols=232  Identities=16%  Similarity=0.131  Sum_probs=168.2

Q ss_pred             ccccceeeeccc-CCCCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeec------Ccee
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT------SVSG   65 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~------~~~~   65 (257)
                      +.++.||++... .+..+++|...-           .+|+..         +..+.|+|++++.+.+...      ...+
T Consensus        35 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~---------l~~l~h~~ii~~~~~~~~~~~~~~~~~~~  105 (364)
T cd07875          35 GAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVL---------MKCVNHKNIIGLLNVFTPQKSLEEFQDVY  105 (364)
T ss_pred             CCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHH---------HHhcCCCCccccceeecccccccccCeEE
Confidence            568899999854 455567776531           122222         3378899999998876543      3579


Q ss_pred             EEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC
Q 044568           66 KIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN  145 (257)
Q Consensus        66 lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~  145 (257)
                      +||||++ ++|.+.+..    .+++..+..++.|++.||.|||++   +++||||||+||+++.++.+||+|||+++...
T Consensus       106 lv~e~~~-~~l~~~~~~----~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~  177 (364)
T cd07875         106 IVMELMD-ANLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAG  177 (364)
T ss_pred             EEEeCCC-CCHHHHHHh----cCCHHHHHHHHHHHHHHHHHHhhC---CeecCCCCHHHEEECCCCcEEEEeCCCccccC
Confidence            9999997 478887752    478889999999999999999999   99999999999999999999999999987544


Q ss_pred             CCc--ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHh---------hhhh
Q 044568          146 EDF--VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKC---------FINR  214 (257)
Q Consensus       146 ~~~--~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~---------~~~~  214 (257)
                      ...  ....++..|+|||.+.+..++.++|||||||++|||++|+.||........   ........         ....
T Consensus       178 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  254 (364)
T cd07875         178 TSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQ---WNKVIEQLGTPCPEFMKKLQP  254 (364)
T ss_pred             CCCcccCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhCCCCCCCCCHHHH---HHHHHHhcCCCCHHHHHhhhH
Confidence            322  344678889999999998899999999999999999999999975422111   11100000         0000


Q ss_pred             hh---------------hhhhcCC------CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          215 EL---------------NKLVRGT------KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       215 ~~---------------~~~~~~~------~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ..               ..+....      .........+.+++.+||+.||.+|| +.|+++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~R~t~~e~L~  317 (364)
T cd07875         255 TVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQ  317 (364)
T ss_pred             HHHHHHhhCCCcCCCChHhhCccccccccccccccccHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence            00               0000000      01111235688999999999999999 999975

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=100.00  E-value=1.5e-32  Score=232.43  Aligned_cols=237  Identities=18%  Similarity=0.158  Sum_probs=172.8

Q ss_pred             ccccceeeecccC-CCCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeec--CceeEEEe
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT--SVSGKIER   69 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~--~~~~lV~E   69 (257)
                      +.++.||+++... +...++|....           .+|++.+.         +++|+|++++.+.+...  +..++|||
T Consensus        16 g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~---------~l~h~ni~~~~~~~~~~~~~~~~lv~e   86 (293)
T cd07843          16 GTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILL---------KLQHPNIVTVKEVVVGSNLDKIYMVME   86 (293)
T ss_pred             CCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHH---------hcCCCCEEEEEEEEEecCCCcEEEEeh
Confidence            5688999999765 44556665542           23333333         88899999999988877  89999999


Q ss_pred             ecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC--
Q 044568           70 PVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED--  147 (257)
Q Consensus        70 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~--  147 (257)
                      |++ ++|.+.+.. ....+++.+...++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||.+......  
T Consensus        87 ~~~-~~L~~~~~~-~~~~l~~~~~~~i~~qi~~aL~~LH~~---~i~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~  161 (293)
T cd07843          87 YVE-HDLKSLMET-MKQPFLQSEVKCLMLQLLSGVAHLHDN---WILHRDLKTSNLLLNNRGILKICDFGLAREYGSPLK  161 (293)
T ss_pred             hcC-cCHHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHHHEEECCCCcEEEeecCceeeccCCcc
Confidence            997 599999875 344689999999999999999999999   9999999999999999999999999988754332  


Q ss_pred             -cccccCCCCccCcccccCCC-CCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHH-HH------HHhhhh-hhhh
Q 044568          148 -FVIDKRDKGYMAPECYKRTP-ISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTN-WV------YKCFIN-RELN  217 (257)
Q Consensus       148 -~~~~~~~~~~~aPE~~~~~~-~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~-~~------~~~~~~-~~~~  217 (257)
                       .....++..|+|||.+.+.. ++.++|+||+|+++|||++|..||...........+.. +.      ++.+.. ....
T Consensus       162 ~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (293)
T cd07843         162 PYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGKSEIDQLNKIFKLLGTPTEKIWPGFSELPGAK  241 (293)
T ss_pred             ccccccccccccCchhhcCCccccchhhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchHHHHHhhccchhc
Confidence             12345567799999987644 68899999999999999999999975532211110000 00      000000 0000


Q ss_pred             --h-------hhcCCCCCHH-HHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          218 --K-------LVRGTKVDKK-NLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       218 --~-------~~~~~~~~~~-~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                        .       .+.. .++.. ..+.+.+++.+||+.+|++|| +.|+++
T Consensus       242 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~l~~~p~~R~t~~ell~  289 (293)
T cd07843         242 KKTFTKYPYNQLRK-KFPALSLSDNGFDLLNRLLTYDPAKRISAEDALK  289 (293)
T ss_pred             ccccccccchhhhc-cccccCCChHHHHHHHHHhccCccccCCHHHHhc
Confidence              0       0000 11111 356788999999999999999 999975

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=100.00  E-value=1.4e-32  Score=228.56  Aligned_cols=232  Identities=18%  Similarity=0.184  Sum_probs=173.4

Q ss_pred             ccccceeeeccc-CCCCCeeeccchhhh----HHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHH
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSWTAD----IEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTD   78 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~   78 (257)
                      +.++.+|++... ++..+++|.......    .+.+.  ..-..+.+++|+|++++.+.....+..++|+||+++++|.+
T Consensus        11 G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~--~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~   88 (264)
T cd06626          11 GTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIA--DEMKVLELLKHPNLVKYYGVEVHREKVYIFMEYCSGGTLEE   88 (264)
T ss_pred             CCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHH--HHHHHHHhCCCCChhheeeeEecCCEEEEEEecCCCCcHHH
Confidence            467899999865 455566665442111    11111  01113338899999999999999999999999999999999


Q ss_pred             HHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcc-------cc
Q 044568           79 IIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFV-------ID  151 (257)
Q Consensus        79 ~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~-------~~  151 (257)
                      ++.  ....+++..+..++.|++.|+.|||++   +++|+||+|+||++++++.++|+|||.+........       ..
T Consensus        89 ~~~--~~~~~~~~~~~~i~~~i~~~l~~lh~~---~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~  163 (264)
T cd06626          89 LLE--HGRILDEHVIRVYTLQLLEGLAYLHSH---GIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSL  163 (264)
T ss_pred             HHh--hcCCCChHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEcccccccccCCCCCcccccccCC
Confidence            997  345688899999999999999999999   999999999999999999999999998875432221       23


Q ss_pred             cCCCCccCcccccCCC---CCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCH-
Q 044568          152 KRDKGYMAPECYKRTP---ISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDK-  227 (257)
Q Consensus       152 ~~~~~~~aPE~~~~~~---~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  227 (257)
                      .++..|+|||.+....   ++.++|+||||+++|++++|..||........ .     ....  .    . ......+. 
T Consensus       164 ~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~~~~~~-~-----~~~~--~----~-~~~~~~~~~  230 (264)
T cd06626         164 AGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSELDNEFQ-I-----MFHV--G----A-GHKPPIPDS  230 (264)
T ss_pred             cCCcCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCccCCcchHH-H-----HHHH--h----c-CCCCCCCcc
Confidence            4567899999998765   78999999999999999999999964421110 0     0000  0    0 00111122 


Q ss_pred             -HHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          228 -KNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       228 -~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                       .....+.+++.+||+.+|++|| +.|+++
T Consensus       231 ~~~~~~~~~li~~~l~~~p~~R~~~~~i~~  260 (264)
T cd06626         231 LQLSPEGKDFLDRCLESDPKKRPTASELLQ  260 (264)
T ss_pred             cccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence             2256788999999999999999 999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=7.7e-33  Score=238.32  Aligned_cols=231  Identities=14%  Similarity=0.159  Sum_probs=187.6

Q ss_pred             ccccceeeec-ccCCCCCeeeccchh--hhHHHHh-HhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHH
Q 044568            4 TKLSNFYRSS-FNARNSPWISRVSWT--ADIEVLS-VAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDI   79 (257)
Q Consensus         4 ~~~~~~y~~~-~~~~~~~~i~~~~~~--~~~~~~~-~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~   79 (257)
                      +-|++|-.++ ..+++.+++|.++-.  .++..-. ++... |+.-..|+|||+++.........|||+|+-++|+|.|+
T Consensus        29 GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVR-CMKLVQHpNiVRLYEViDTQTKlyLiLELGD~GDl~Dy  107 (864)
T KOG4717|consen   29 GHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVR-CMKLVQHPNIVRLYEVIDTQTKLYLILELGDGGDLFDY  107 (864)
T ss_pred             CceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHH-HHHHhcCcCeeeeeehhcccceEEEEEEecCCchHHHH
Confidence            3466666665 567788888765521  1111111 11222 55578899999999999999999999999999999999


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceee-CCCCceEEeeecccccC--CCCcccccCCCC
Q 044568           80 IFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM-DEFWTAKILDFGLAKLP--NEDFVIDKRDKG  156 (257)
Q Consensus        80 l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~-~~~~~~kl~dfg~~~~~--~~~~~~~~~~~~  156 (257)
                      |-+ ...++.++.+.+|+.||+.|+.|+|+-   .++||||||+|+.+ .+-|-+||.|||++..+  +......+|+..
T Consensus       108 ImK-He~Gl~E~La~kYF~QI~~AI~YCHqL---HVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~PG~kL~TsCGSLA  183 (864)
T KOG4717|consen  108 IMK-HEEGLNEDLAKKYFAQIVHAISYCHQL---HVVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQPGKKLTTSCGSLA  183 (864)
T ss_pred             HHh-hhccccHHHHHHHHHHHHHHHHHHhhh---hhhcccCCcceeEEeeecCceEeeeccccccCCCcchhhcccchhh
Confidence            987 678899999999999999999999999   99999999999966 46789999999998754  334467788999


Q ss_pred             ccCcccccCCCCC-ccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC-CCCHHHHHHHH
Q 044568          157 YMAPECYKRTPIS-VKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT-KVDKKNLENLV  234 (257)
Q Consensus       157 ~~aPE~~~~~~~~-~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~  234 (257)
                      |-|||++.+..|+ ++.||||+|++||-+.+|+.||+...                ..+.+..+++.. ..|.....++.
T Consensus       184 YSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeAN----------------DSETLTmImDCKYtvPshvS~eCr  247 (864)
T KOG4717|consen  184 YSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEAN----------------DSETLTMIMDCKYTVPSHVSKECR  247 (864)
T ss_pred             ccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCcccccc----------------chhhhhhhhcccccCchhhhHHHH
Confidence            9999999999997 78899999999999999999998552                223444566655 66777888999


Q ss_pred             HHHHHcccCCCCCCC-hHHHHH
Q 044568          235 KVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       235 ~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +||..||..||++|. .+||+.
T Consensus       248 dLI~sMLvRdPkkRAslEeI~s  269 (864)
T KOG4717|consen  248 DLIQSMLVRDPKKRASLEEIVS  269 (864)
T ss_pred             HHHHHHHhcCchhhccHHHHhc
Confidence            999999999999999 999863

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=100.00  E-value=1e-32  Score=229.03  Aligned_cols=229  Identities=15%  Similarity=0.139  Sum_probs=173.4

Q ss_pred             ccccceeeecccC-CCCCeeeccchh-----hhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHH
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSWT-----ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLT   77 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~   77 (257)
                      +.++.||+++... +..+++|.....     +..+.+.  ..-..+.++.|+|++++.+.+...+..++||||+++++|.
T Consensus         4 g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~--~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~   81 (265)
T cd05579           4 GAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVL--TERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDLA   81 (265)
T ss_pred             CCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHH--HHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCcHH
Confidence            4678999999875 666677754321     1111111  0011333788999999999999999999999999999999


Q ss_pred             HHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC----------
Q 044568           78 DIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED----------  147 (257)
Q Consensus        78 ~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~----------  147 (257)
                      +++.+  ...+++..+..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||++......          
T Consensus        82 ~~l~~--~~~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~  156 (265)
T cd05579          82 SLLEN--VGSLDEDVARIYIAEIVLALEYLHSN---GIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEK  156 (265)
T ss_pred             HHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHc---CeecCCCCHHHeEEcCCCCEEEEecccchhcccCcccccccccc
Confidence            99974  34789999999999999999999999   9999999999999999999999999987643222          


Q ss_pred             -cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc-CCCC
Q 044568          148 -FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR-GTKV  225 (257)
Q Consensus       148 -~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  225 (257)
                       .....++..|++||.......+.++|+||||+++|++++|..||......   .....             ... ....
T Consensus       157 ~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~---~~~~~-------------~~~~~~~~  220 (265)
T cd05579         157 EDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPPFHGETPE---EIFQN-------------ILNGKIEW  220 (265)
T ss_pred             cccCcccCccccCHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHH---HHHHH-------------HhcCCcCC
Confidence             12234567799999998888899999999999999999999999754211   00100             000 0011


Q ss_pred             CHH--HHHHHHHHHHHcccCCCCCCC-h---HHHHH
Q 044568          226 DKK--NLENLVKVGLWCVQDEPALRP-M---KCAVM  255 (257)
Q Consensus       226 ~~~--~~~~l~~l~~~cl~~~p~~RP-~---~ei~~  255 (257)
                      +..  .+..+.+++.+||+.+|.+|| +   .|+++
T Consensus       221 ~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~~~~~l~  256 (265)
T cd05579         221 PEDVEVSDEAIDLISKLLVPDPEKRLGAKSIEEIKN  256 (265)
T ss_pred             CccccCCHHHHHHHHHHhcCCHhhcCCCccHHHHhc
Confidence            122  267889999999999999999 9   55543

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=100.00  E-value=5.9e-33  Score=230.15  Aligned_cols=245  Identities=17%  Similarity=0.143  Sum_probs=179.4

Q ss_pred             cccccceeeecccCCC-CCeeeccchhhhHH---HHhHhhhccccccccCCc-eeeeceeeeecC------ceeEEEeec
Q 044568            3 CTKLSNFYRSSFNARN-SPWISRVSWTADIE---VLSVAMRGSKCTRIRGGL-LLNVPVRAKLTS------VSGKIERPV   71 (257)
Q Consensus         3 ~~~~~~~y~~~~~~~~-~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~h~~-i~~~~~~~~~~~------~~~lV~E~~   71 (257)
                      ++-.++||+|.....+ .+++|++....+-+   .-.+...- .+.+++|+| ++.+.+.+...+      ..+||+||+
T Consensus        21 eGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREis-llk~L~~~~~iv~L~dv~~~~~~~~~~~~l~lvfe~~   99 (323)
T KOG0594|consen   21 EGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREIS-LLKRLSHANHIVRLHDVIHTSNNHRGIGKLYLVFEFL   99 (323)
T ss_pred             CCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHH-HHHHhCCCcceEEEEeeeeecccccccceEEEEEEee
Confidence            4567899999955554 78899887644311   11111111 233888999 999999999887      788999999


Q ss_pred             CCCCHHHHHhccCC--CCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC--
Q 044568           72 RNGSLTDIIFCSAE--RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED--  147 (257)
Q Consensus        72 ~~gsL~~~l~~~~~--~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~--  147 (257)
                      . -+|.+++.....  ..++...++.++.|++.|++|||++   +|+||||||.|+|+++.+.+||+|||+++....+  
T Consensus       100 d-~DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~---~IlHRDLKPQNlLi~~~G~lKlaDFGlAra~~ip~~  175 (323)
T KOG0594|consen  100 D-RDLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHSH---GILHRDLKPQNLLISSSGVLKLADFGLARAFSIPMR  175 (323)
T ss_pred             c-ccHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHhC---CeecccCCcceEEECCCCcEeeeccchHHHhcCCcc
Confidence            6 499999986433  4788889999999999999999999   9999999999999999999999999999865433  


Q ss_pred             -cccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhh-----hhhhhh
Q 044568          148 -FVIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINR-----ELNKLV  220 (257)
Q Consensus       148 -~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  220 (257)
                       ......|.-|.|||.+.+. .|+...||||+||++.||++++.-|.+..+.+   .+.........+.     ....+-
T Consensus       176 ~yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~se~~---ql~~If~~lGtP~e~~Wp~v~~~~  252 (323)
T KOG0594|consen  176 TYTPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPGDSEID---QLFRIFRLLGTPNEKDWPGVSSLP  252 (323)
T ss_pred             cccccEEEeeccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCCCCCCCCcHHH---HHHHHHHHcCCCCccCCCCccccc
Confidence             3455666779999999987 68999999999999999999999998764321   2222211111110     000000


Q ss_pred             c----------CCCCCH---HHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          221 R----------GTKVDK---KNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       221 ~----------~~~~~~---~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +          +.....   .......+++..|++++|.+|. ++.++.
T Consensus       253 ~~k~~f~~~~~~~~l~~~~~~~~~~~~dll~~~L~y~p~~R~Sa~~al~  301 (323)
T KOG0594|consen  253 DYKAPFPKWPGPKDLSSILPKLDPDGIELLSKLLQYDPAKRISAKGALT  301 (323)
T ss_pred             cccccCcCCCCccchHHhccccCccHHHHHHHHhccCcccCcCHHHHhc
Confidence            0          000001   1114789999999999999999 888765

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=6.2e-33  Score=236.62  Aligned_cols=190  Identities=18%  Similarity=0.194  Sum_probs=152.7

Q ss_pred             cccccCCceeeeceeeee--cCceeEEEeecCCCCHHHHHhccCCCC-CCHHHHHHHHHHHHHHHHHHhhCCCCCeeecc
Q 044568           43 CTRIRGGLLLNVPVRAKL--TSVSGKIERPVRNGSLTDIIFCSAERN-PYWNQRVRIALDVAKGILYLHDECEPPILHCD  119 (257)
Q Consensus        43 ~~~~~h~~i~~~~~~~~~--~~~~~lV~E~~~~gsL~~~l~~~~~~~-l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~d  119 (257)
                      +.++.|+|+|++.....+  .+..|||+|||..|.+...=   .+.. +++.++++|+.+++.||+|||.+   ||+|||
T Consensus       162 lKkl~H~nVV~LiEvLDDP~s~~~YlVley~s~G~v~w~p---~d~~els~~~Ar~ylrDvv~GLEYLH~Q---giiHRD  235 (576)
T KOG0585|consen  162 LKKLHHPNVVKLIEVLDDPESDKLYLVLEYCSKGEVKWCP---PDKPELSEQQARKYLRDVVLGLEYLHYQ---GIIHRD  235 (576)
T ss_pred             HHhcCCcCeeEEEEeecCcccCceEEEEEeccCCccccCC---CCcccccHHHHHHHHHHHHHHHHHHHhc---Ceeccc
Confidence            339999999999998875  57899999999998876654   4444 89999999999999999999999   999999


Q ss_pred             CCCCceeeCCCCceEEeeecccccCCCC--------cccccCCCCccCcccccCCC---C-CccccchhHHHHHHHHHhc
Q 044568          120 IKPQNILMDEFWTAKILDFGLAKLPNED--------FVIDKRDKGYMAPECYKRTP---I-SVKADVYGYGIVLLETICC  187 (257)
Q Consensus       120 l~~~nil~~~~~~~kl~dfg~~~~~~~~--------~~~~~~~~~~~aPE~~~~~~---~-~~~~Di~s~G~~l~el~~g  187 (257)
                      |||+|+|++.++++||+|||.+......        .....||+.|+|||.+..+.   + +.+.||||+|++||-++.|
T Consensus       236 IKPsNLLl~~~g~VKIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG  315 (576)
T KOG0585|consen  236 IKPSNLLLSSDGTVKISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFG  315 (576)
T ss_pred             cchhheEEcCCCcEEeeccceeeecccCCccccHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhc
Confidence            9999999999999999999998754111        14568999999999998632   3 4778999999999999999


Q ss_pred             CCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC---CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHH
Q 044568          188 RKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT---KVDKKNLENLVKVGLWCVQDEPALRP-MKCAV  254 (257)
Q Consensus       188 ~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~  254 (257)
                      +.||-++...                .....+....   +...+..+.+.+|+.++|++||++|- ..+|.
T Consensus       316 ~~PF~~~~~~----------------~l~~KIvn~pL~fP~~pe~~e~~kDli~~lL~KdP~~Ri~l~~ik  370 (576)
T KOG0585|consen  316 QLPFFDDFEL----------------ELFDKIVNDPLEFPENPEINEDLKDLIKRLLEKDPEQRITLPDIK  370 (576)
T ss_pred             cCCcccchHH----------------HHHHHHhcCcccCCCcccccHHHHHHHHHHhhcChhheeehhhhe
Confidence            9999754111                0111122211   22234578899999999999999999 88874

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=100.00  E-value=2e-32  Score=231.92  Aligned_cols=224  Identities=17%  Similarity=0.161  Sum_probs=173.6

Q ss_pred             ccccceeeeccc-CCCCCeeeccch---------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCC
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW---------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRN   73 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~---------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~   73 (257)
                      +.++.||++... ++..+++|....         .+|+..+.         ++.|+|+++..+.+...+..++||||+++
T Consensus        31 g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~---------~l~h~~iv~~~~~~~~~~~~~lv~e~~~~  101 (292)
T cd06657          31 GSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMR---------DYQHENVVEMYNSYLVGDELWVVMEFLEG  101 (292)
T ss_pred             CCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHH---------hcCCcchhheeeEEEeCCEEEEEEecCCC
Confidence            356889999875 566677776542         22333333         78899999999999999999999999999


Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---ccc
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---FVI  150 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~~~  150 (257)
                      ++|.+++.   ...+++.....++.|++.|+.|||++   +++|+|++|.||+++.++.++++|||.+......   ...
T Consensus       102 ~~L~~~~~---~~~~~~~~~~~~~~ql~~~l~~lH~~---givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~~~~~~  175 (292)
T cd06657         102 GALTDIVT---HTRMNEEQIAAVCLAVLKALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKS  175 (292)
T ss_pred             CcHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEEcccccceecccccccccc
Confidence            99999884   34689999999999999999999999   9999999999999999999999999987643321   123


Q ss_pred             ccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC-CCCHHH
Q 044568          151 DKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT-KVDKKN  229 (257)
Q Consensus       151 ~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  229 (257)
                      ..++..|++||.+....++.++|+||+|+++|++++|..||.......   .....          ....+.. ......
T Consensus       176 ~~~~~~y~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~~~~~---~~~~~----------~~~~~~~~~~~~~~  242 (292)
T cd06657         176 LVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLK---AMKMI----------RDNLPPKLKNLHKV  242 (292)
T ss_pred             cccCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH---HHHHH----------HhhCCcccCCcccC
Confidence            456778999999988888999999999999999999999997542111   00000          0011111 111223


Q ss_pred             HHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          230 LENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       230 ~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +..+.+++.+||+.+|.+|| +.++++
T Consensus       243 ~~~l~~li~~~l~~~P~~R~~~~~ll~  269 (292)
T cd06657         243 SPSLKGFLDRLLVRDPAQRATAAELLK  269 (292)
T ss_pred             CHHHHHHHHHHHhCCcccCcCHHHHhc
Confidence            45688899999999999999 999875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=100.00  E-value=1.8e-32  Score=238.29  Aligned_cols=232  Identities=16%  Similarity=0.140  Sum_probs=168.6

Q ss_pred             ccccceeeeccc-CCCCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeec------Ccee
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT------SVSG   65 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~------~~~~   65 (257)
                      +.++.||++... .+..+++|...-           .+|+..         +..+.|+|++++.+.+...      ...+
T Consensus        28 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~---------l~~l~h~niv~~~~~~~~~~~~~~~~~~~   98 (355)
T cd07874          28 GAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVL---------MKCVNHKNIISLLNVFTPQKSLEEFQDVY   98 (355)
T ss_pred             cCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHH---------HHHhCCCchhceeeeeeccccccccceeE
Confidence            568899998754 456667776542           122222         3377899999999887643      3568


Q ss_pred             EEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC
Q 044568           66 KIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN  145 (257)
Q Consensus        66 lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~  145 (257)
                      +||||+++ +|.+.+..    .+++..+..++.|++.||.|||++   +++||||||+||+++.++.+||+|||+++...
T Consensus        99 lv~e~~~~-~l~~~~~~----~l~~~~~~~~~~qi~~aL~~LH~~---givHrDikp~Nill~~~~~~kl~Dfg~~~~~~  170 (355)
T cd07874          99 LVMELMDA-NLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAG  170 (355)
T ss_pred             EEhhhhcc-cHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChHHEEECCCCCEEEeeCcccccCC
Confidence            99999974 77777742    488889999999999999999999   99999999999999999999999999987543


Q ss_pred             CCc--ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhh---------hhh
Q 044568          146 EDF--VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCF---------INR  214 (257)
Q Consensus       146 ~~~--~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~---------~~~  214 (257)
                      ...  ....+|..|+|||.+.+..++.++|+|||||++|||++|+.||........   .........         ...
T Consensus       171 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  247 (355)
T cd07874         171 TSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQ---WNKVIEQLGTPCPEFMKKLQP  247 (355)
T ss_pred             CccccCCccccCCccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH---HHHHHHHhCCCCHHHHHhhcH
Confidence            322  344678899999999988899999999999999999999999975421111   000000000         000


Q ss_pred             hhhhhhc---------------CC------CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          215 ELNKLVR---------------GT------KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       215 ~~~~~~~---------------~~------~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .......               ..      .........+.+++.+||+.||++|| +.|+++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rps~~ell~  310 (355)
T cd07874         248 TVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDEALQ  310 (355)
T ss_pred             HHHHHHhcCCccccccchhhccccccccccccccccchHHHHHHHHHhcCCchhcCCHHHHhc
Confidence            0000000               00      11112245788999999999999999 999986

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=100.00  E-value=3.2e-32  Score=228.90  Aligned_cols=236  Identities=18%  Similarity=0.147  Sum_probs=173.4

Q ss_pred             cccccceeeeccc-CCCCCeeeccchh----hhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHH
Q 044568            3 CTKLSNFYRSSFN-ARNSPWISRVSWT----ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLT   77 (257)
Q Consensus         3 ~~~~~~~y~~~~~-~~~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~   77 (257)
                      .+.++.||++... +++.+++|.....    .+.+.+.  ..........|+|++++.+.+...+..++||||++ |+|.
T Consensus        11 ~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~--e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~~~-~~l~   87 (283)
T cd06617          11 RGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLM--DLDISMRSVDCPYTVTFYGALFREGDVWICMEVMD-TSLD   87 (283)
T ss_pred             ccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHH--HHHHHHHHcCCCCeeeeeEEEecCCcEEEEhhhhc-ccHH
Confidence            3578899999976 4677788865421    1222221  11112335679999999999999999999999996 6888


Q ss_pred             HHHhcc--CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc--ccccC
Q 044568           78 DIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF--VIDKR  153 (257)
Q Consensus        78 ~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~--~~~~~  153 (257)
                      +++...  ....+++.++..++.|++.|+.|||++.  +++|+||+|+||+++.++.+||+|||.+.......  ....+
T Consensus        88 ~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~--~i~h~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~  165 (283)
T cd06617          88 KFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKL--SVIHRDVKPSNVLINRNGQVKLCDFGISGYLVDSVAKTIDAG  165 (283)
T ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcC--CeecCCCCHHHEEECCCCCEEEeecccccccccccccccccC
Confidence            887642  3356899999999999999999999853  89999999999999999999999999987543222  23456


Q ss_pred             CCCccCcccccC----CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHH
Q 044568          154 DKGYMAPECYKR----TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKN  229 (257)
Q Consensus       154 ~~~~~aPE~~~~----~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (257)
                      +..|+|||.+.+    ..++.++|+||||+++|+|++|+.||.......+.  +...         . .-..+.......
T Consensus       166 ~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~--~~~~---------~-~~~~~~~~~~~~  233 (283)
T cd06617         166 CKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDSWKTPFQQ--LKQV---------V-EEPSPQLPAEKF  233 (283)
T ss_pred             CccccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCCCccccCHHH--HHHH---------H-hcCCCCCCcccc
Confidence            778999998864    34688999999999999999999999643211111  0000         0 000011111234


Q ss_pred             HHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          230 LENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       230 ~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +..+.+++.+||+.+|.+|| +.++++
T Consensus       234 ~~~l~~li~~~l~~~p~~Rp~~~~il~  260 (283)
T cd06617         234 SPEFQDFVNKCLKKNYKERPNYPELLQ  260 (283)
T ss_pred             CHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            56789999999999999999 999875

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=1.3e-32  Score=258.85  Aligned_cols=228  Identities=18%  Similarity=0.150  Sum_probs=168.7

Q ss_pred             ccccceeeecccCCCCC-eeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeec--CceeEEEe
Q 044568            4 TKLSNFYRSSFNARNSP-WISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT--SVSGKIER   69 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~-~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~--~~~~lV~E   69 (257)
                      +.|+.||+++....... ++|.+.           +..|++++.         .+.|+||+++.+.+...  ...+||||
T Consensus        24 GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~---------~L~HPNIVrl~d~f~de~~~~lyIVME   94 (1021)
T PTZ00266         24 GRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMR---------ELKHKNIVRYIDRFLNKANQKLYILME   94 (1021)
T ss_pred             CCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHH---------HcCCCCcCeEEEEEEecCCCEEEEEEe
Confidence            56899999997766544 444332           233444444         88999999999987643  56899999


Q ss_pred             ecCCCCHHHHHhcc--CCCCCCHHHHHHHHHHHHHHHHHHhhCCC----CCeeeccCCCCceeeCC--------------
Q 044568           70 PVRNGSLTDIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECE----PPILHCDIKPQNILMDE--------------  129 (257)
Q Consensus        70 ~~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~----~~i~h~dl~~~nil~~~--------------  129 (257)
                      |+++|+|.++|...  ....+++..++.|+.||+.||.|||+...    .+|+|+||||+|||++.              
T Consensus        95 Y~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~~~~~n  174 (1021)
T PTZ00266         95 FCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITAQANN  174 (1021)
T ss_pred             CCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCccccccccccccc
Confidence            99999999999642  23569999999999999999999998510    15999999999999964              


Q ss_pred             ---CCceEEeeecccccCCCC--cccccCCCCccCcccccC--CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHH
Q 044568          130 ---FWTAKILDFGLAKLPNED--FVIDKRDKGYMAPECYKR--TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEII  202 (257)
Q Consensus       130 ---~~~~kl~dfg~~~~~~~~--~~~~~~~~~~~aPE~~~~--~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~  202 (257)
                         ...+||+|||++......  .....+|+.|+|||++..  ..++.++|||||||++|||++|..||........   
T Consensus       175 ~ng~~iVKLsDFGlAr~l~~~s~~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~~~~~~q---  251 (1021)
T PTZ00266        175 LNGRPIAKIGDFGLSKNIGIESMAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKANNFSQ---  251 (1021)
T ss_pred             cCCCCceEEccCCccccccccccccccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCcCCcHHH---
Confidence               235899999998754322  234468899999999864  3578999999999999999999999974421110   


Q ss_pred             HHHHHHHhhhhhhhhhhhcCC-CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          203 LTNWVYKCFINRELNKLVRGT-KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                         ...         .+.... ......+..+.+|+..||+.+|.+|| +.|++.
T Consensus       252 ---li~---------~lk~~p~lpi~~~S~eL~dLI~~~L~~dPeeRPSa~QlL~  294 (1021)
T PTZ00266        252 ---LIS---------ELKRGPDLPIKGKSKELNILIKNLLNLSAKERPSALQCLG  294 (1021)
T ss_pred             ---HHH---------HHhcCCCCCcCCCCHHHHHHHHHHhcCChhHCcCHHHHhc
Confidence               000         000001 11112346789999999999999999 999874

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=100.00  E-value=3.8e-32  Score=224.51  Aligned_cols=233  Identities=18%  Similarity=0.193  Sum_probs=178.6

Q ss_pred             ccccceeeeccc-CCCCCeeeccchhh----hHHHHhHhhhccccccccCCceeeeceeeeec--CceeEEEeecCCCCH
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSWTA----DIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT--SVSGKIERPVRNGSL   76 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~--~~~~lV~E~~~~gsL   76 (257)
                      +.++.+|+|... ++..+++|......    +.+.+... . ..+.++.|+|++++.+.+...  +..++|+||+++++|
T Consensus        11 g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e-~-~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L   88 (260)
T cd06606          11 GSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALERE-I-RILSSLQHPNIVRYYGSERDEEKNTLNIFLEYVSGGSL   88 (260)
T ss_pred             cCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHH-H-HHHHHcCCCCEeeEEEEEecCCCCeEEEEEEecCCCcH
Confidence            467899999987 45556666543221    11111110 0 023378899999999999988  899999999999999


Q ss_pred             HHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC-----cccc
Q 044568           77 TDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED-----FVID  151 (257)
Q Consensus        77 ~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~-----~~~~  151 (257)
                      .+++..  ...+++.++..++.|++.|+.|||+.   +++|+|++|+||+++.++.++|+|||.+......     ....
T Consensus        89 ~~~~~~--~~~~~~~~~~~~~~~l~~~l~~lh~~---~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~  163 (260)
T cd06606          89 SSLLKK--FGKLPEPVIRKYTRQILEGLAYLHSN---GIVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGSV  163 (260)
T ss_pred             HHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEcCCCCEEEcccccEEecccccccccccCC
Confidence            999974  33899999999999999999999999   9999999999999999999999999988754433     2344


Q ss_pred             cCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHH
Q 044568          152 KRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLE  231 (257)
Q Consensus       152 ~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (257)
                      .++..|.+||.+.....+.++|+||||+++|++++|..||........  ..    ..      ..........+...+.
T Consensus       164 ~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~--~~----~~------~~~~~~~~~~~~~~~~  231 (260)
T cd06606         164 RGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELGNPMA--AL----YK------IGSSGEPPEIPEHLSE  231 (260)
T ss_pred             CCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHH--HH----Hh------ccccCCCcCCCcccCH
Confidence            667789999999888889999999999999999999999975531100  00    00      0000111133444567


Q ss_pred             HHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          232 NLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       232 ~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .+.+++.+|++.+|.+|| +.|+++
T Consensus       232 ~l~~~i~~~l~~~p~~Rp~~~~ll~  256 (260)
T cd06606         232 EAKDFLRKCLRRDPKKRPTADELLQ  256 (260)
T ss_pred             HHHHHHHHhCcCChhhCCCHHHHhh
Confidence            899999999999999999 999975

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=5e-34  Score=266.45  Aligned_cols=225  Identities=19%  Similarity=0.204  Sum_probs=180.8

Q ss_pred             ccccceeeec-ccCCCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            4 TKLSNFYRSS-FNARNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~-~~~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      |-|+.||.+- .++|+.-++|...           ..+|++++.         .+.|+|+++.+|+-.+.+..+|-||||
T Consensus      1246 G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE---------~lnHpNlV~YyGVEvHRekv~IFMEyC 1316 (1509)
T KOG4645|consen 1246 GTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLE---------GLNHPNLVRYYGVEVHREKVYIFMEYC 1316 (1509)
T ss_pred             cceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHH---------hccCccccccCceeecHHHHHHHHHHh
Confidence            5678899887 5555555666543           356777777         899999999999999999999999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc---
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF---  148 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~---  148 (257)
                      .+|+|.+.+.  .++..++....-+..|++.|+.|||++   ||||||+||.||+++.+|.+|++|||.+.......   
T Consensus      1317 ~~GsLa~ll~--~gri~dE~vt~vyt~qll~gla~LH~~---gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki~~~~~~~ 1391 (1509)
T KOG4645|consen 1317 EGGSLASLLE--HGRIEDEMVTRVYTKQLLEGLAYLHEH---GIVHRDIKPANILLDFNGLIKYGDFGSAVKIKNNAQTM 1391 (1509)
T ss_pred             ccCcHHHHHH--hcchhhhhHHHHHHHHHHHHHHHHHhc---CceecCCCccceeeecCCcEEeecccceeEecCchhcC
Confidence            9999999997  566677777778999999999999999   99999999999999999999999999987654332   


Q ss_pred             ----ccccCCCCccCcccccCCC---CCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc
Q 044568          149 ----VIDKRDKGYMAPECYKRTP---ISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR  221 (257)
Q Consensus       149 ----~~~~~~~~~~aPE~~~~~~---~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (257)
                          ....||+.|||||.+.+..   -..++||||+||++.||+||+.||..-+..        |+  .+..-   ..-.
T Consensus      1392 ~~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~dne--------~a--IMy~V---~~gh 1458 (1509)
T KOG4645|consen 1392 PGELQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAELDNE--------WA--IMYHV---AAGH 1458 (1509)
T ss_pred             CHHHHhhcCCchhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchhhccch--------hH--HHhHH---hccC
Confidence                4568999999999997643   457899999999999999999999643111        11  11110   1111


Q ss_pred             CCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          222 GTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       222 ~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ....|.....+-.+++.+|++.||++|- +.|+++
T Consensus      1459 ~Pq~P~~ls~~g~dFle~Cl~~dP~~Rw~~~qlle 1493 (1509)
T KOG4645|consen 1459 KPQIPERLSSEGRDFLEHCLEQDPKMRWTASQLLE 1493 (1509)
T ss_pred             CCCCchhhhHhHHHHHHHHHhcCchhhhHHHHHHH
Confidence            2245666778889999999999999999 888875

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-32  Score=227.46  Aligned_cols=241  Identities=14%  Similarity=0.138  Sum_probs=174.2

Q ss_pred             ceeeec-ccCCCCCeeeccc--hhhhHHHHhH-hhhccccccccCCceeeeceeeee-----cCceeEEEeecCCCCHHH
Q 044568            8 NFYRSS-FNARNSPWISRVS--WTADIEVLSV-AMRGSKCTRIRGGLLLNVPVRAKL-----TSVSGKIERPVRNGSLTD   78 (257)
Q Consensus         8 ~~y~~~-~~~~~~~~i~~~~--~~~~~~~~~~-~~~~~~~~~~~h~~i~~~~~~~~~-----~~~~~lV~E~~~~gsL~~   78 (257)
                      +|-.+. -.+++.++||+..  |.+.+..... .... .+.+++|+||+.+.++...     -+..|+|+|+|+ .+|.+
T Consensus        37 vVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElk-lLr~~~HeNIi~l~di~~p~~~~~f~DvYiV~elMe-tDL~~  114 (359)
T KOG0660|consen   37 VVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELK-LLRHLRHENIIGLLDIFRPPSRDKFNDVYLVFELME-TDLHQ  114 (359)
T ss_pred             eEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHH-HHHHhcCCCcceEEeecccccccccceeEEehhHHh-hHHHH
Confidence            344443 4556778898877  5444432221 1111 4449999999999988875     357899999995 59999


Q ss_pred             HHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC-----CCcccccC
Q 044568           79 IIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN-----EDFVIDKR  153 (257)
Q Consensus        79 ~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~-----~~~~~~~~  153 (257)
                      +|+  ....|+..-+..++.|++.||.|+|+.   +++|||+||.|+++..+..+|++|||+++...     ...+...-
T Consensus       115 iik--~~~~L~d~H~q~f~YQiLrgLKyiHSA---nViHRDLKPsNll~n~~c~lKI~DFGLAR~~~~~~~~~~mTeYVa  189 (359)
T KOG0660|consen  115 IIK--SQQDLTDDHAQYFLYQILRGLKYIHSA---NVIHRDLKPSNLLLNADCDLKICDFGLARYLDKFFEDGFMTEYVA  189 (359)
T ss_pred             HHH--cCccccHHHHHHHHHHHHHhcchhhcc---cccccccchhheeeccCCCEEeccccceeeccccCcccchhccee
Confidence            997  556699999999999999999999999   99999999999999999999999999999764     23345566


Q ss_pred             CCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHH-------HHHhhhhhhhhhhhc----
Q 044568          154 DKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNW-------VYKCFINRELNKLVR----  221 (257)
Q Consensus       154 ~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~----  221 (257)
                      |.-|.|||.+... .|+.+.||||.||++.||++|++.|.+.+.-..-..+...       ......+..+...+.    
T Consensus       190 TRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d~v~Ql~lI~~~lGtP~~e~l~~i~s~~ar~yi~slp~  269 (359)
T KOG0660|consen  190 TRWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFPGKDYVHQLQLILELLGTPSEEDLQKIRSEKARPYIKSLPQ  269 (359)
T ss_pred             eeeecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCCCCCchHHHHHHHHHhcCCCCHHHHHHhccHHHHHHHHhCCC
Confidence            7779999998754 6999999999999999999999999875322211000000       001111111111111    


Q ss_pred             CCCC-----CHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          222 GTKV-----DKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       222 ~~~~-----~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ....     -....+..++|+.+||..||.+|+ ++|.++
T Consensus       270 ~p~~~f~~~fp~a~p~AidLlekmL~fdP~kRita~eAL~  309 (359)
T KOG0660|consen  270 IPKQPFSSIFPNANPLAIDLLEKMLVFDPKKRITAEEALA  309 (359)
T ss_pred             CCCCCHHHHcCCCCHHHHHHHHHHhccCccccCCHHHHhc
Confidence            1111     113347889999999999999999 999875

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=100.00  E-value=3e-32  Score=230.68  Aligned_cols=239  Identities=17%  Similarity=0.174  Sum_probs=171.2

Q ss_pred             ccccceeeeccc-CCCCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      +.++.||+|+.. +++.+++|....           .+|++.+.         ++.|+|++++.+.+...+..++||||+
T Consensus        13 g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~---------~l~h~~i~~~~~~~~~~~~~~lv~e~~   83 (294)
T PLN00009         13 GTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLK---------EMQHGNIVRLQDVVHSEKRLYLVFEYL   83 (294)
T ss_pred             CCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHH---------hccCCCEeeEEEEEecCCeEEEEEecc
Confidence            457899999976 455677775432           23444444         888999999999999999999999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCC-CCceEEeeecccccCCCC---
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE-FWTAKILDFGLAKLPNED---  147 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~-~~~~kl~dfg~~~~~~~~---  147 (257)
                      + ++|.+.+.......+++..+..++.|++.||.|||++   +++|+||+|+||+++. ++.+|++|||++......   
T Consensus        84 ~-~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~i~H~dl~p~nill~~~~~~~kl~dfg~~~~~~~~~~~  159 (294)
T PLN00009         84 D-LDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSH---RVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRT  159 (294)
T ss_pred             c-ccHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCcceEEEECCCCEEEEcccccccccCCCccc
Confidence            6 5888888653444568888889999999999999999   9999999999999985 557899999998653322   


Q ss_pred             cccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHH----hhh----hhhhhh
Q 044568          148 FVIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYK----CFI----NRELNK  218 (257)
Q Consensus       148 ~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~----~~~----~~~~~~  218 (257)
                      .....++..|+|||.+.+. .++.++|+||+|+++|++++|..||..............+...    .+.    -+....
T Consensus       160 ~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (294)
T PLN00009        160 FTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGDSEIDELFKIFRILGTPNEETWPGVTSLPDYKS  239 (294)
T ss_pred             cccCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhccccccchhhhh
Confidence            1233456789999988664 5789999999999999999999999765322111110000000    000    000000


Q ss_pred             hhcC---C---CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          219 LVRG---T---KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       219 ~~~~---~---~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ....   .   .......+.+.+++.+|++.+|++|| +.++++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~~l~  283 (294)
T PLN00009        240 AFPKWPPKDLATVVPTLEPAGVDLLSKMLRLDPSKRITARAALE  283 (294)
T ss_pred             hcccCCCCCHHHhCcCCChHHHHHHHHHccCChhhCcCHHHHhc
Confidence            0000   0   01122346689999999999999999 999875

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=100.00  E-value=3.8e-32  Score=233.84  Aligned_cols=247  Identities=15%  Similarity=0.110  Sum_probs=172.8

Q ss_pred             ccccceeeeccc-CCCCCeeeccchh----hhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHH
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSWT----ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTD   78 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~   78 (257)
                      ..++.||+++.. .++.+++|.....    ...+.+....  .....+.|+|++++.+.+...+..++||||+.+++|.+
T Consensus        11 ~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~--~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~~~~l~~   88 (328)
T cd08226          11 CNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEV--VLSHFFRHPNIMTSWTVFTTGSWLWVISPFMAYGSANS   88 (328)
T ss_pred             cCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHH--HHHHhCCCCCcceEeeeEecCCceEEEEecccCCCHHH
Confidence            356789999865 5677777765421    1122111100  02226789999999999999999999999999999999


Q ss_pred             HHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc----------
Q 044568           79 IIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF----------  148 (257)
Q Consensus        79 ~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~----------  148 (257)
                      ++.......+++..+..++.|++.||.|||++   +++||||||+||+++.++.++++||+.+.......          
T Consensus        89 ~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~---~ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (328)
T cd08226          89 LLKTYFPEGMSEALIGNILFGALRGLNYLHQN---GYIHRNIKASHILISGDGLVSLSGLSHLYSLVRNGQKAKVVYDFP  165 (328)
T ss_pred             HHHhhcccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEeCCCcEEEechHHHhhhhccCcccccccccc
Confidence            99764456789999999999999999999999   99999999999999999999999997543211110          


Q ss_pred             ccccCCCCccCcccccCC--CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHH-------------HHHhhhh
Q 044568          149 VIDKRDKGYMAPECYKRT--PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNW-------------VYKCFIN  213 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~~--~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~-------------~~~~~~~  213 (257)
                      ....++..|++||.+.+.  .++.++|+||||+++||+++|..||...............             .......
T Consensus       166 ~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (328)
T cd08226         166 QFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITACELATGRVPFQDMLRTQMLLQKLKGPPYSPLDITTFPCEESRMKN  245 (328)
T ss_pred             ccccCccCccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCCCCCcChHHHHHHHhcCCCCCCccccccchhhhhhcc
Confidence            111234569999998764  4789999999999999999999999754221110000000             0000000


Q ss_pred             h--hh---------h-----hhhc---CCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          214 R--EL---------N-----KLVR---GTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       214 ~--~~---------~-----~~~~---~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .  ..         .     ....   ....+......+.+++.+||+.||++|| +.|+++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpta~e~l~  307 (328)
T cd08226         246 SQSGVDSGIGESVVAAGMTQTMTSERLRTPSSKTFSPAFQNLVELCLQQDPEKRPSASSLLS  307 (328)
T ss_pred             chhhhhcccccchhccccccccccccccchhhhhhhHHHHHHHHHHccCCcccCCCHHHHhh
Confidence            0  00         0     0000   0012234567899999999999999999 999975

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=100.00  E-value=2.4e-32  Score=229.75  Aligned_cols=238  Identities=16%  Similarity=0.137  Sum_probs=173.6

Q ss_pred             ccccceeeecccC-CCCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeec--CceeEEEe
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT--SVSGKIER   69 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~--~~~~lV~E   69 (257)
                      +.++.||+++..+ +...++|....           .+|++.+.         .+.|+|++++.+.+...  +..++|||
T Consensus        10 g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~---------~l~~~~i~~~~~~~~~~~~~~~~lv~e   80 (287)
T cd07840          10 GTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQ---------KLRHPNIVRLKEIVTSKGKGSIYMVFE   80 (287)
T ss_pred             CCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHH---------hccCCCeeeheeeEecCCCCcEEEEec
Confidence            5678999999765 55566665542           23444444         77899999999999988  89999999


Q ss_pred             ecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-
Q 044568           70 PVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-  148 (257)
Q Consensus        70 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-  148 (257)
                      |+++ +|.+++.. ....+++.++..++.|++.|+.|||++   +++|+||+|+||++++++.++++|||.+....... 
T Consensus        81 ~~~~-~l~~~~~~-~~~~~~~~~~~~i~~~i~~al~~LH~~---~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~~~~  155 (287)
T cd07840          81 YMDH-DLTGLLDS-PEVKFTESQIKCYMKQLLEGLQYLHSN---GILHRDIKGSNILINNDGVLKLADFGLARPYTKRNS  155 (287)
T ss_pred             cccc-cHHHHHhc-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCcHHHeEEcCCCCEEEccccceeeccCCCc
Confidence            9974 99999875 335789999999999999999999999   99999999999999999999999999987544332 


Q ss_pred             ---ccccCCCCccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHH-------HHhhhhh-hh
Q 044568          149 ---VIDKRDKGYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWV-------YKCFINR-EL  216 (257)
Q Consensus       149 ---~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~-------~~~~~~~-~~  216 (257)
                         ....++..|+|||.+.+ ..++.++|+||||+++||+++|..||................       ++....- ..
T Consensus       156 ~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (287)
T cd07840         156 ADYTNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGSTELEQLEKIFELCGSPTDENWPGVSKLPWF  235 (287)
T ss_pred             ccccccccccccCCceeeEccccCChHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchhhccccccchhh
Confidence               23345677999998765 457899999999999999999999997653221111110000       0000000 00


Q ss_pred             hhhhcCCC--------CCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          217 NKLVRGTK--------VDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       217 ~~~~~~~~--------~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ........        .....+..+.+++.+||+.+|++|| ++++++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~  283 (287)
T cd07840         236 ENLKPKKPYKRRLREFFKHLIDPSALDLLDKLLTLDPKKRISADQALQ  283 (287)
T ss_pred             hhccccccchhHHHHHhcccCCHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence            00000000        0111257889999999999999999 999975

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=7.9e-32  Score=226.55  Aligned_cols=247  Identities=15%  Similarity=0.140  Sum_probs=174.7

Q ss_pred             ccccceeeecccC-CCCCeeeccchh--hhHHHHhHhhhcccccccc-CCceeeeceeeeecCceeEEEeecCCCCHHHH
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSWT--ADIEVLSVAMRGSKCTRIR-GGLLLNVPVRAKLTSVSGKIERPVRNGSLTDI   79 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~-h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~   79 (257)
                      +.++.||+|+..+ +..+++|+..-.  ..-+........ .+.+++ |+|++++.+.+...+..++||||+ +|+|.+.
T Consensus        10 g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~-~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~-~~~l~~~   87 (283)
T cd07830          10 GTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVK-SLRKLNEHPNIVKLKEVFRENDELYFVFEYM-EGNLYQL   87 (283)
T ss_pred             CCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHH-HHHhccCCCCchhHHHHhhcCCcEEEEEecC-CCCHHHH
Confidence            5678999999865 455667764321  000000000111 333777 999999999999999999999999 7899999


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc--ccccCCCCc
Q 044568           80 IFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF--VIDKRDKGY  157 (257)
Q Consensus        80 l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~  157 (257)
                      +.......+++.++..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||.+.......  ....++..|
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~---~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~  164 (283)
T cd07830          88 MKDRKGKPFSESVIRSIIYQILQGLAHIHKH---GFFHRDLKPENLLVSGPEVVKIADFGLAREIRSRPPYTDYVSTRWY  164 (283)
T ss_pred             HHhcccccCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEEcCCCCEEEeecccceeccCCCCcCCCCCcccc
Confidence            9753445789999999999999999999999   99999999999999999999999999887543321  234567789


Q ss_pred             cCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHH---------HHHHhhhhhhhhhhhcCC----
Q 044568          158 MAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTN---------WVYKCFINRELNKLVRGT----  223 (257)
Q Consensus       158 ~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~----  223 (257)
                      +|||.+.. ..++.++|+||||+++||+++|+.||..............         |.............+...    
T Consensus       165 ~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (283)
T cd07830         165 RAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFPGSSEIDQLYKICSVLGTPTKQDWPEGYKLASKLGFRFPQFAPTS  244 (283)
T ss_pred             cCceeeecCcCcCCccchhhHHHHHHHHHhCCCccCCCChHHHHHHHHHhcCCCChhhhhhHhhhhcccccccccccccc
Confidence            99998854 4578999999999999999999999975532221111110         000000000000000000    


Q ss_pred             --CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          224 --KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       224 --~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                        .........+.+++.+||+.+|++|| +.|+++
T Consensus       245 ~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~  279 (283)
T cd07830         245 LHQLIPNASPEAIDLIKDMLRWDPKKRPTASQALQ  279 (283)
T ss_pred             HHHHcccCCHHHHHHHHHhcccCcccCCCHHHHhh
Confidence              00011246799999999999999999 999975

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=100.00  E-value=6.8e-32  Score=226.71  Aligned_cols=245  Identities=16%  Similarity=0.086  Sum_probs=169.1

Q ss_pred             ccccceeeecccC-CCCCeeeccch--hhhHHHHhHhhhccccccc-cCCceeeeceeeeec--CceeEEEeecCCCCHH
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW--TADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLT--SVSGKIERPVRNGSLT   77 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~--~~~~lV~E~~~~gsL~   77 (257)
                      +.++.||+++... +..+++|....  ............. .+.++ .|+|++++.+.+...  +..++||||++ |+|.
T Consensus        10 g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~-~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~e~~~-~~l~   87 (282)
T cd07831          10 GTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQ-ALRRLSPHPNILRLIEVLFDRKTGRLALVFELMD-MNLY   87 (282)
T ss_pred             cccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHH-HHhhcCCCCCccceEEEEecCCCCcEEEEEecCC-ccHH
Confidence            4578899998654 55556665332  1100000001111 22245 399999999999887  88999999997 5888


Q ss_pred             HHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc--ccccCCC
Q 044568           78 DIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF--VIDKRDK  155 (257)
Q Consensus        78 ~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~  155 (257)
                      +.+.. ....+++.++..++.|++.||.|||++   +++|+||+|.||+++. +.++|+|||.+.......  ....++.
T Consensus        88 ~~l~~-~~~~~~~~~~~~~~~qi~~~L~~LH~~---~i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~~~~~~~~~~~~~~  162 (282)
T cd07831          88 ELIKG-RKRPLPEKRVKSYMYQLLKSLDHMHRN---GIFHRDIKPENILIKD-DILKLADFGSCRGIYSKPPYTEYISTR  162 (282)
T ss_pred             HHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHHC---CceecccCHHHEEEcC-CCeEEEecccccccccCCCcCCCCCCc
Confidence            88864 345789999999999999999999999   9999999999999999 999999999987543221  2335677


Q ss_pred             CccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHH-------HHhhhhhhhhhhhcCC----
Q 044568          156 GYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWV-------YKCFINRELNKLVRGT----  223 (257)
Q Consensus       156 ~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~----  223 (257)
                      .|+|||.+.. ..++.++|+||+|+++|||++|..||......+.........       .............-+.    
T Consensus       163 ~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (282)
T cd07831         163 WYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGTNELDQIAKIHDVLGTPDAEVLKKFRKSRHMNYNFPSKKGT  242 (282)
T ss_pred             ccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCCCHHHHHHHHHHHcCCCCHHHHHhhcccccccccCcccccc
Confidence            8999997654 456889999999999999999999997653221101110000       0000000000000000    


Q ss_pred             ---CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          224 ---KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       224 ---~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                         ......+..+.+++.+||+.+|++|| ++++++
T Consensus       243 ~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~  278 (282)
T cd07831         243 GLRKLLPNASAEGLDLLKKLLAYDPDERITAKQALR  278 (282)
T ss_pred             cHHHHcccccHHHHHHHHHHhccCcccccCHHHHhh
Confidence               00123457899999999999999999 999975

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=100.00  E-value=6.1e-32  Score=227.32  Aligned_cols=229  Identities=17%  Similarity=0.128  Sum_probs=169.9

Q ss_pred             ccccceeeeccc-CCCCCeeeccch------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCH
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSL   76 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL   76 (257)
                      +.++.||++... +++.+++|....      ..+.................|++++.+...+...+..++||||+++|+|
T Consensus         5 g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~g~~L   84 (278)
T cd05606           5 GGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDL   84 (278)
T ss_pred             CCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecCCCCcH
Confidence            467899999865 456777775431      1111111100000022245689999999999999999999999999999


Q ss_pred             HHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC-CcccccCCC
Q 044568           77 TDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE-DFVIDKRDK  155 (257)
Q Consensus        77 ~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~-~~~~~~~~~  155 (257)
                      .+++.  ....+++..+..++.|++.|+.|||++   +++|+|++|+||+++.++.++|+|||++..... ......++.
T Consensus        85 ~~~l~--~~~~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~di~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~  159 (278)
T cd05606          85 HYHLS--QHGVFSEAEMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTH  159 (278)
T ss_pred             HHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHC---CEEcCCCCHHHEEECCCCCEEEccCcCccccCccCCcCcCCCc
Confidence            99997  456799999999999999999999999   999999999999999999999999998764322 223446788


Q ss_pred             CccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHH
Q 044568          156 GYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLV  234 (257)
Q Consensus       156 ~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  234 (257)
                      .|+|||.+.++ .++.++|+||+|+++|||++|+.||..............            ........+......+.
T Consensus       160 ~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~~~~~~~~~------------~~~~~~~~~~~~s~~~~  227 (278)
T cd05606         160 GYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRM------------TLTMAVELPDSFSPELR  227 (278)
T ss_pred             CCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCCCCccchHHHHHH------------hhccCCCCCCcCCHHHH
Confidence            89999998754 588999999999999999999999975532221110000            00011122333457789


Q ss_pred             HHHHHcccCCCCCCC
Q 044568          235 KVGLWCVQDEPALRP  249 (257)
Q Consensus       235 ~l~~~cl~~~p~~RP  249 (257)
                      +++.+|++.+|.+||
T Consensus       228 ~li~~~l~~~p~~R~  242 (278)
T cd05606         228 SLLEGLLQRDVNRRL  242 (278)
T ss_pred             HHHHHHhhcCHHhcc
Confidence            999999999999999

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-33  Score=221.40  Aligned_cols=197  Identities=18%  Similarity=0.196  Sum_probs=158.3

Q ss_pred             ccccccCCceeeeceeeeecCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCC
Q 044568           42 KCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIK  121 (257)
Q Consensus        42 ~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~  121 (257)
                      .|..+.|||||++..........+||+|+|.|++|-.-|-  ...-+++..+.+++.||++||.|+|.+   +|+|||+|
T Consensus        63 IC~~LqHP~IvrL~~ti~~~~~~ylvFe~m~G~dl~~eIV--~R~~ySEa~aSH~~rQiLeal~yCH~n---~IvHRDvk  137 (355)
T KOG0033|consen   63 ICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIV--AREFYSEADASHCIQQILEALAYCHSN---GIVHRDLK  137 (355)
T ss_pred             HHHhcCCCcEeehhhhhcccceeEEEEecccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhc---CceeccCC
Confidence            6779999999999999999999999999999998866553  235578888999999999999999999   99999999


Q ss_pred             CCceeeC---CCCceEEeeecccccCCCCc--ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCC
Q 044568          122 PQNILMD---EFWTAKILDFGLAKLPNEDF--VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDAS  196 (257)
Q Consensus       122 ~~nil~~---~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~  196 (257)
                      |+|+++.   ...-+||+|||++...+...  ....|||.|++||++++.+|+..+|||+.|++||-++.|..||.+++.
T Consensus       138 P~nllLASK~~~A~vKL~~FGvAi~l~~g~~~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~~~  217 (355)
T KOG0033|consen  138 PENLLLASKAKGAAVKLADFGLAIEVNDGEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQ  217 (355)
T ss_pred             hhheeeeeccCCCceeecccceEEEeCCccccccccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCccH
Confidence            9999996   34568999999998655322  456889999999999999999999999999999999999999986421


Q ss_pred             ChhhHHHHHHHHHhhhhhhhhhhhc-CCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          197 KPEEIILTNWVYKCFINRELNKLVR-GTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ..   .....     ....    .+ +........++..+|+.+||..||.+|. +.|.++
T Consensus       218 ~r---lye~I-----~~g~----yd~~~~~w~~is~~Ak~LvrrML~~dP~kRIta~EAL~  266 (355)
T KOG0033|consen  218 HR---LYEQI-----KAGA----YDYPSPEWDTVTPEAKSLIRRMLTVNPKKRITADEALK  266 (355)
T ss_pred             HH---HHHHH-----hccc----cCCCCcccCcCCHHHHHHHHHHhccChhhhccHHHHhC
Confidence            11   11111     0011    11 1122333456788899999999999999 998864

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=100.00  E-value=5.2e-32  Score=226.52  Aligned_cols=228  Identities=17%  Similarity=0.247  Sum_probs=169.3

Q ss_pred             ccccceeeecccC----CCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecC------
Q 044568            4 TKLSNFYRSSFNA----RNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTS------   62 (257)
Q Consensus         4 ~~~~~~y~~~~~~----~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~------   62 (257)
                      +.++.||++....    +..+++|...           +.+|++.+.         ++.|+|++++.+.+...+      
T Consensus        10 g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~i~~~~~~~~~~~~~~~~~   80 (273)
T cd05074          10 GEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMK---------EFDHPNVIKLIGVSLRSRAKGRLP   80 (273)
T ss_pred             CCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHh---------cCCCCCcceEEEEEccCCCCCccc
Confidence            4578999998643    3556776433           223333333         889999999999776532      


Q ss_pred             ceeEEEeecCCCCHHHHHhcc----CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeee
Q 044568           63 VSGKIERPVRNGSLTDIIFCS----AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDF  138 (257)
Q Consensus        63 ~~~lV~E~~~~gsL~~~l~~~----~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~df  138 (257)
                      ..++++||+++|+|.+++...    ....+++.....++.|++.|+.|||++   +++|+||+|+||+++.++.++++||
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~nili~~~~~~kl~df  157 (273)
T cd05074          81 IPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSK---NFIHRDLAARNCMLNENMTVCVADF  157 (273)
T ss_pred             ceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CEeecccchhhEEEcCCCCEEECcc
Confidence            347899999999999987532    223578899999999999999999999   9999999999999999999999999


Q ss_pred             cccccCCCCc-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhh
Q 044568          139 GLAKLPNEDF-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFI  212 (257)
Q Consensus       139 g~~~~~~~~~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~  212 (257)
                      |.++......     ....++..|++||.+.+..++.++||||||+++||+++ |..||......    ....+..    
T Consensus       158 g~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~~~~----~~~~~~~----  229 (273)
T cd05074         158 GLSKKIYSGDYYRQGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVENS----EIYNYLI----  229 (273)
T ss_pred             cccccccCCcceecCCCccCchhhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCCCHH----HHHHHHH----
Confidence            9887543211     12233456999999988888999999999999999999 88888644211    1111100    


Q ss_pred             hhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          213 NRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ..      .....+...+..+.+++.+||+.+|.+|| +.|+++.|
T Consensus       230 ~~------~~~~~~~~~~~~~~~l~~~~l~~~p~~Rps~~~~~~~l  269 (273)
T cd05074         230 KG------NRLKQPPDCLEDVYELMCQCWSPEPKCRPSFQHLRDQL  269 (273)
T ss_pred             cC------CcCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            00      00112234557899999999999999999 99998754

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=100.00  E-value=2.9e-32  Score=228.97  Aligned_cols=238  Identities=16%  Similarity=0.170  Sum_probs=174.4

Q ss_pred             ccccceeeeccc-CCCCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      +.++.||++... +++..++|....           .+|++.+.         ++.|++++++.+.+...+..++|+||+
T Consensus        10 g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~---------~l~~~~i~~~~~~~~~~~~~~~v~e~~   80 (283)
T cd05118          10 GTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLK---------ELNHPNIIKLLDVFRHKGDLYLVFEFM   80 (283)
T ss_pred             CCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHH---------HhcCCCcchHHHhhccCCCEEEEEecc
Confidence            567889999875 455566665432           22333333         778999999999999999999999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc---
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF---  148 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~---  148 (257)
                      ++ +|.+++.. ....+++.++..++.|++.||.|||++   +++|+|++|+||+++.++.++++|||.+.......   
T Consensus        81 ~~-~l~~~l~~-~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~p~nili~~~~~~~l~df~~~~~~~~~~~~~  155 (283)
T cd05118          81 DT-DLYKLIKD-RQRGLPESLIKSYLYQLLQGLAFCHSH---GILHRDLKPENLLINTEGVLKLADFGLARSFGSPVRPY  155 (283)
T ss_pred             CC-CHHHHHHh-hcccCCHHHHHHHHHHHHHHHHHHHHC---CeeecCcCHHHEEECCCCcEEEeeeeeeEecCCCcccc
Confidence            75 99998875 346789999999999999999999999   99999999999999999999999999887544322   


Q ss_pred             ccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHH-------HHHhhhh--hhh-h
Q 044568          149 VIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNW-------VYKCFIN--REL-N  217 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~-------~~~~~~~--~~~-~  217 (257)
                      ....++..|.|||.+.+. .++.++|+||+|+++|++++|+.||......+........       .+.....  ... .
T Consensus       156 ~~~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (283)
T cd05118         156 THYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKSEIDQLFKIFRTLGTPDPEVWPKFTSLARNYKF  235 (283)
T ss_pred             cCccCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCchHhcccchhhhhhhhh
Confidence            234566779999998876 6889999999999999999999999754321110000000       0000000  000 0


Q ss_pred             hhhcCC-----CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          218 KLVRGT-----KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       218 ~~~~~~-----~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ......     .........+.+++.+||+.||.+|| +.++++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~ll~  279 (283)
T cd05118         236 SFPKKAGMPLPKLFPNASPQALDLLSQMLHYDPHKRITAEQALA  279 (283)
T ss_pred             hhccccccCHHHhhhhhCHHHHHHHHHHhccCcccCcCHHHHhh
Confidence            000000     11223457899999999999999999 999985

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=100.00  E-value=6.2e-32  Score=228.63  Aligned_cols=240  Identities=16%  Similarity=0.141  Sum_probs=169.5

Q ss_pred             cccccceeeecccC-CCCCeeeccch-----------hhhHHHHhHhhhcccccccc-CCceeeeceeeeecCc-----e
Q 044568            3 CTKLSNFYRSSFNA-RNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIR-GGLLLNVPVRAKLTSV-----S   64 (257)
Q Consensus         3 ~~~~~~~y~~~~~~-~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~-h~~i~~~~~~~~~~~~-----~   64 (257)
                      .+.++.||++.... +..+++|....           .+|++.+.         .+. |+|++++.+.+...+.     .
T Consensus        11 ~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~---------~l~~~~~i~~~~~~~~~~~~~~~~~~   81 (295)
T cd07837          11 EGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQ---------MLSESIYIVRLLDVEHVEEKNGKPSL   81 (295)
T ss_pred             ccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHH---------HccCCCCccceeeeEeecCCCCCceE
Confidence            35788999999764 55666775432           23444443         553 5999999998887665     7


Q ss_pred             eEEEeecCCCCHHHHHhccC---CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCC-CCceEEeeecc
Q 044568           65 GKIERPVRNGSLTDIIFCSA---ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE-FWTAKILDFGL  140 (257)
Q Consensus        65 ~lV~E~~~~gsL~~~l~~~~---~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~-~~~~kl~dfg~  140 (257)
                      ++||||+++ +|.+++....   ...+++..+..++.|++.||.|||++   +++|+||+|+||+++. ++.++|+|||.
T Consensus        82 ~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~---~i~H~dl~~~nil~~~~~~~~kl~dfg~  157 (295)
T cd07837          82 YLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKH---GVMHRDLKPQNLLVDKQKGLLKIADLGL  157 (295)
T ss_pred             EEEeeccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChHHEEEecCCCeEEEeeccc
Confidence            999999985 8999886422   34689999999999999999999999   9999999999999998 88999999998


Q ss_pred             cccCCCC---cccccCCCCccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHH-Hhh-hhh
Q 044568          141 AKLPNED---FVIDKRDKGYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVY-KCF-INR  214 (257)
Q Consensus       141 ~~~~~~~---~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~-~~~-~~~  214 (257)
                      +......   .....+++.|+|||.+.+ ..++.++|+||||+++|+|++|..||................. +.. ...
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (295)
T cd07837         158 GRAFSIPVKSYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGDSELQQLLHIFKLLGTPTEQVWP  237 (295)
T ss_pred             ceecCCCccccCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCCChhhCc
Confidence            8743322   122345677999998865 4578999999999999999999999975532211111100000 000 000


Q ss_pred             hhhhhh-----cC-C-----CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          215 ELNKLV-----RG-T-----KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       215 ~~~~~~-----~~-~-----~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ......     .. .     .........+.+++.+||+.||.+|| +.|+++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~R~~~~eil~  290 (295)
T cd07837         238 GVSKLRDWHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKRISAKAALT  290 (295)
T ss_pred             chhhccchhhcCcccchhHHHhccccCHHHHHHHHHHccCChhhcCCHHHHhc
Confidence            000000     00 0     00112456789999999999999999 999975

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=100.00  E-value=4.6e-32  Score=230.71  Aligned_cols=238  Identities=16%  Similarity=0.148  Sum_probs=167.7

Q ss_pred             ccccceeeeccc-CCCCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeecC--------c
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTS--------V   63 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~--------~   63 (257)
                      +.++.||+++.. ++..+++|....           .+|++.+.         ++.|+|++++.+.+...+        .
T Consensus        23 g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~---------~l~h~~iv~~~~~~~~~~~~~~~~~~~   93 (310)
T cd07865          23 GTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQ---------LLKHENVVNLIEICRTKATPYNRYKGS   93 (310)
T ss_pred             CCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHH---------hCCCCCccceEEEEecccccccCCCce
Confidence            467899999865 455666765432           22333433         888999999998876554        4


Q ss_pred             eeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeeccccc
Q 044568           64 SGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKL  143 (257)
Q Consensus        64 ~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~  143 (257)
                      .++||||+. ++|.+.+.. ....+++.++..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||.+..
T Consensus        94 ~~lv~e~~~-~~l~~~l~~-~~~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~  168 (310)
T cd07865          94 FYLVFEFCE-HDLAGLLSN-KNVKFTLSEIKKVMKMLLNGLYYIHRN---KILHRDMKAANILITKDGILKLADFGLARA  168 (310)
T ss_pred             EEEEEcCCC-cCHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEECCCCcEEECcCCCccc
Confidence            499999996 588888864 445789999999999999999999999   999999999999999999999999998875


Q ss_pred             CCCCc-------ccccCCCCccCcccccCCC-CCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHH-------
Q 044568          144 PNEDF-------VIDKRDKGYMAPECYKRTP-ISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVY-------  208 (257)
Q Consensus       144 ~~~~~-------~~~~~~~~~~aPE~~~~~~-~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~-------  208 (257)
                      .....       ....++..|+|||.+.+.. ++.++|+||||+++||+++|..||...........+.....       
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (310)
T cd07865         169 FSLSKNSKPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGNTEQHQLTLISQLCGSITPEVW  248 (310)
T ss_pred             ccCCcccCCCCccCcccCccccCcHHhcCCcccCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhc
Confidence            43221       1234566799999887643 68899999999999999999999976532211111111000       


Q ss_pred             Hhhhhhhh-hhhhcCCC---------CCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          209 KCFINREL-NKLVRGTK---------VDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       209 ~~~~~~~~-~~~~~~~~---------~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +....... .....+..         .+......+.+++.+||+.||.+|| ++|+++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~dli~~~l~~~P~~R~t~~e~l~  306 (310)
T cd07865         249 PGVDKLELFKKMELPQGQKRKVKERLKPYVKDPHALDLIDKLLVLDPAKRIDADTALN  306 (310)
T ss_pred             ccccchhhhhhccCCCccchhhHHhcccccCCHHHHHHHHHHhcCChhhccCHHHHhc
Confidence            00000000 00000000         0011234567899999999999999 999975

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=100.00  E-value=4.5e-32  Score=228.83  Aligned_cols=238  Identities=18%  Similarity=0.179  Sum_probs=168.2

Q ss_pred             ccccceeeecccC-CCCCeeeccchh---hhHHHHhHhhhcccccccc-CCceeeeceeeeecCceeEEEeecCCCCHHH
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSWT---ADIEVLSVAMRGSKCTRIR-GGLLLNVPVRAKLTSVSGKIERPVRNGSLTD   78 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~-h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~   78 (257)
                      +.++.||+++... +..+++|.....   .....+. ... ..+.++. |+|++++.+.+...+..+++|||+.. ++.+
T Consensus        15 G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~-~e~-~~l~~~~~~~~iv~~~~~~~~~~~~~~~~e~~~~-~l~~   91 (288)
T cd06616          15 GAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLL-MDL-DVVMRSSDCPYIVKFYGALFREGDCWICMELMDI-SLDK   91 (288)
T ss_pred             CCceEEEEEEECCCCCEEEEEEehhccChHHHHHHH-HHH-HHHHHhcCCCCEeeeeeEEecCCcEEEEEecccC-CHHH
Confidence            4578999998654 455667755421   1111110 000 0223554 99999999999999999999999864 6555


Q ss_pred             H---HhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC--cccccC
Q 044568           79 I---IFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED--FVIDKR  153 (257)
Q Consensus        79 ~---l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~--~~~~~~  153 (257)
                      +   +.......+++..+..++.|++.|+.|||+..  +++||||+|+||+++.++.++|+|||++......  .....+
T Consensus        92 l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~--~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~  169 (288)
T cd06616          92 FYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEEL--KIIHRDVKPSNILLDRNGNIKLCDFGISGQLVDSIAKTRDAG  169 (288)
T ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhcC--CeeccCCCHHHEEEccCCcEEEeecchhHHhccCCccccccC
Confidence            4   33223467999999999999999999999731  8999999999999999999999999998643322  233456


Q ss_pred             CCCccCcccccCC---CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHH
Q 044568          154 DKGYMAPECYKRT---PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNL  230 (257)
Q Consensus       154 ~~~~~aPE~~~~~---~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (257)
                      +..|+|||.+.+.   .++.++|+||||+++||+++|+.||......     .... .... ...... + ........+
T Consensus       170 ~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~-----~~~~-~~~~-~~~~~~-~-~~~~~~~~~  240 (288)
T cd06616         170 CRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPKWNSV-----FDQL-TQVV-KGDPPI-L-SNSEEREFS  240 (288)
T ss_pred             ccCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCCCchhcchH-----HHHH-hhhc-CCCCCc-C-CCcCCCccC
Confidence            7889999998766   5889999999999999999999999644200     0000 0000 000000 0 011122356


Q ss_pred             HHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          231 ENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       231 ~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ..+.+++.+||+.+|++|| +.||++
T Consensus       241 ~~l~~li~~~l~~~p~~Rpt~~~i~~  266 (288)
T cd06616         241 PSFVNFINLCLIKDESKRPKYKELLE  266 (288)
T ss_pred             HHHHHHHHHHccCChhhCcCHHHHhc
Confidence            7899999999999999999 999875

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=100.00  E-value=1.6e-31  Score=228.57  Aligned_cols=231  Identities=17%  Similarity=0.149  Sum_probs=170.3

Q ss_pred             ccccceeeecccC-CCCCeeeccchh-----hhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHH
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSWT-----ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLT   77 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~   77 (257)
                      +.++.||+|+... +..+++|.....     ...+.+.. .. ..+.+++|+|++++.+.+...+..++||||+. |++.
T Consensus        32 g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~-E~-~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~  108 (313)
T cd06633          32 GSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIK-EV-KFLQQLKHPNTIEYKGCYLKEHTAWLVMEYCL-GSAS  108 (313)
T ss_pred             CCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHH-HH-HHHHhCCCCCCccEEEEEEeCCEEEEEEecCC-CCHH
Confidence            4578999998654 445566654321     11111110 01 13348889999999999999999999999996 5888


Q ss_pred             HHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcccccCCCCc
Q 044568           78 DIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGY  157 (257)
Q Consensus        78 ~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~  157 (257)
                      +.+.. ....+++.++..++.|++.|+.|||++   +++|+|++|+||+++.++.++|+|||.+.... ......++..|
T Consensus       109 ~~l~~-~~~~l~~~~~~~~~~qi~~al~~LH~~---gi~H~dl~p~nili~~~~~~kL~dfg~~~~~~-~~~~~~~~~~y  183 (313)
T cd06633         109 DLLEV-HKKPLQEVEIAAITHGALQGLAYLHSH---NMIHRDIKAGNILLTEPGQVKLADFGSASKSS-PANSFVGTPYW  183 (313)
T ss_pred             HHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCChhhEEECCCCCEEEeecCCCcccC-CCCCccccccc
Confidence            88864 456789999999999999999999999   99999999999999999999999999876432 22344677889


Q ss_pred             cCccccc---CCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHH
Q 044568          158 MAPECYK---RTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLV  234 (257)
Q Consensus       158 ~aPE~~~---~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  234 (257)
                      +|||.+.   ...++.++|+||||+++|+|++|..||........   ...    ..      ....+..........+.
T Consensus       184 ~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~~~~~~---~~~----~~------~~~~~~~~~~~~~~~l~  250 (313)
T cd06633         184 MAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSA---LYH----IA------QNDSPTLQSNEWTDSFR  250 (313)
T ss_pred             cChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCChHHH---HHH----HH------hcCCCCCCccccCHHHH
Confidence            9999984   35678899999999999999999999965421110   000    00      00001111222345688


Q ss_pred             HHHHHcccCCCCCCC-hHHHHH
Q 044568          235 KVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       235 ~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +++.+||+.+|++|| +.++++
T Consensus       251 ~li~~~l~~~P~~Rp~~~~~l~  272 (313)
T cd06633         251 GFVDYCLQKIPQERPASAELLR  272 (313)
T ss_pred             HHHHHHccCChhhCcCHHHHhc
Confidence            999999999999999 999875

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=100.00  E-value=1e-31  Score=222.06  Aligned_cols=226  Identities=18%  Similarity=0.226  Sum_probs=177.6

Q ss_pred             ccccceeeecccC-CCCCeeeccchh-----------hhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSWT-----------ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~~-----------~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      +.++.||++.... +..+++|.....           +++++         +.+++|+|++++.+.+...+..++|+||+
T Consensus        11 g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~---------l~~l~~~~~~~~~~~~~~~~~~~lv~e~~   81 (258)
T cd08215          11 GSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKI---------LKKLNHPNIIKYYESFEEKGKLCIVMEYA   81 (258)
T ss_pred             CCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHH---------HHhcCCCChhheEEEEecCCEEEEEEEec
Confidence            5678999999764 555566665432           22333         33778999999999999999999999999


Q ss_pred             CCCCHHHHHhccC--CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-
Q 044568           72 RNGSLTDIIFCSA--ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-  148 (257)
Q Consensus        72 ~~gsL~~~l~~~~--~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-  148 (257)
                      ++++|.+++....  ...+++.+...++.+++.|+.|||++   +++|+|++|+||+++.++.++|+|||.+....... 
T Consensus        82 ~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~---~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~  158 (258)
T cd08215          82 DGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSR---KILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTVD  158 (258)
T ss_pred             CCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhC---CEecccCChHHeEEcCCCcEEECCccceeecccCcc
Confidence            9999999997532  47799999999999999999999999   99999999999999999999999999887543322 


Q ss_pred             --ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCC
Q 044568          149 --VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVD  226 (257)
Q Consensus       149 --~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (257)
                        ....+++.|+|||.+....++.++|+||+|+++|++++|..||.......   ...    .     .....  ....+
T Consensus       159 ~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~---~~~----~-----~~~~~--~~~~~  224 (258)
T cd08215         159 LAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGENLLE---LAL----K-----ILKGQ--YPPIP  224 (258)
T ss_pred             eecceeeeecccChhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCCcHHH---HHH----H-----HhcCC--CCCCC
Confidence              23456778999999988888999999999999999999999996542110   000    0     00000  11223


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          227 KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       227 ~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ......+.+++.+||+.+|.+|| +.|+++
T Consensus       225 ~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~  254 (258)
T cd08215         225 SQYSSELRNLVSSLLQKDPEERPSIAQILQ  254 (258)
T ss_pred             CCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence            34557789999999999999999 999975

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-32  Score=233.29  Aligned_cols=191  Identities=19%  Similarity=0.236  Sum_probs=165.3

Q ss_pred             cccCCceeeeceeeeecCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCc
Q 044568           45 RIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQN  124 (257)
Q Consensus        45 ~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~n  124 (257)
                      ++..+.||.+.-.+...+..|||+..|.||+|.-+|....+..+++..++.++.+|+.||++||..   +|++||+||+|
T Consensus       241 kV~s~FiVslaYAfeTkd~LClVLtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~~---~iVYRDLKPeN  317 (591)
T KOG0986|consen  241 KVSSPFIVSLAYAFETKDALCLVLTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHRR---RIVYRDLKPEN  317 (591)
T ss_pred             HhccCcEEEEeeeecCCCceEEEEEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHhc---ceeeccCChhh
Confidence            777889999999999999999999999999999999977778999999999999999999999999   99999999999


Q ss_pred             eeeCCCCceEEeeecccccCC--CCcccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHH
Q 044568          125 ILMDEFWTAKILDFGLAKLPN--EDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEII  202 (257)
Q Consensus       125 il~~~~~~~kl~dfg~~~~~~--~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~  202 (257)
                      ||+|+.|+++|+|+|++..+.  .+.....||.+|||||++.+..|+...|+||+||++|||+.|+.||....+      
T Consensus       318 ILLDd~GhvRISDLGLAvei~~g~~~~~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~Ke------  391 (591)
T KOG0986|consen  318 ILLDDHGHVRISDLGLAVEIPEGKPIRGRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQRKE------  391 (591)
T ss_pred             eeeccCCCeEeeccceEEecCCCCccccccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhhhhh------
Confidence            999999999999999987543  334556899999999999999999999999999999999999999964421      


Q ss_pred             HHHHHHHhhhhhhhhh--hhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hH
Q 044568          203 LTNWVYKCFINRELNK--LVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MK  251 (257)
Q Consensus       203 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~  251 (257)
                             .....++..  +-++..+++...++...++...|+.||++|. .+
T Consensus       392 -------Kvk~eEvdrr~~~~~~ey~~kFS~eakslc~~LL~Kdp~~RLGcr  436 (591)
T KOG0986|consen  392 -------KVKREEVDRRTLEDPEEYSDKFSEEAKSLCEGLLTKDPEKRLGCR  436 (591)
T ss_pred             -------hhhHHHHHHHHhcchhhcccccCHHHHHHHHHHHccCHHHhccCC
Confidence                   122223333  2233367777888999999999999999997 54

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.3e-31  Score=221.21  Aligned_cols=224  Identities=21%  Similarity=0.203  Sum_probs=175.6

Q ss_pred             ccccceeeecccC-CCCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      +.++.+|+++... +..+++|....           .++++.+.         +++|+|++++.+.+...+..++||||+
T Consensus        11 g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~---------~l~~~~i~~~~~~~~~~~~~~~v~e~~   81 (254)
T cd06627          11 GAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLK---------NLKHPNIVKYIGSIETSDSLYIILEYA   81 (254)
T ss_pred             cCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHH---------hCCCCCccEEEEEEEeCCEEEEEEecC
Confidence            4578899998664 44566665432           23333333         788999999999999999999999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc---
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF---  148 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~---  148 (257)
                      ++++|.+++..  ...+++..+..++.|++.|+.+||++   +++|+|++|+||+++.++.++|+|||.+.......   
T Consensus        82 ~~~~L~~~~~~--~~~l~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~  156 (254)
T cd06627          82 ENGSLRQIIKK--FGPFPESLVAVYVYQVLQGLAYLHEQ---GVIHRDIKAANILTTKDGVVKLADFGVATKLNDVSKDD  156 (254)
T ss_pred             CCCcHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCHHHEEECCCCCEEEeccccceecCCCcccc
Confidence            99999999974  36789999999999999999999999   99999999999999999999999999887544322   


Q ss_pred             ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHH
Q 044568          149 VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKK  228 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (257)
                      ....++..|++||......++.++|+||+|+++|++++|..||.......   .  .+...         .......+..
T Consensus       157 ~~~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~~~~---~--~~~~~---------~~~~~~~~~~  222 (254)
T cd06627         157 ASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLNPMA---A--LFRIV---------QDDHPPLPEG  222 (254)
T ss_pred             cccccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCccHHH---H--HHHHh---------ccCCCCCCCC
Confidence            23456778999999987778899999999999999999999997442110   0  00000         0011123334


Q ss_pred             HHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          229 NLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       229 ~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ....+.+++.+||+.+|++|| +.+++.
T Consensus       223 ~~~~~~~~i~~~l~~~p~~R~~~~~~l~  250 (254)
T cd06627         223 ISPELKDFLMQCFQKDPNLRPTAKQLLK  250 (254)
T ss_pred             CCHHHHHHHHHHHhCChhhCcCHHHHhc
Confidence            467889999999999999999 999875

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=100.00  E-value=7.5e-32  Score=232.51  Aligned_cols=234  Identities=15%  Similarity=0.131  Sum_probs=172.8

Q ss_pred             ccccceeeeccc-CCCCCeeeccch-----------------------hhhHHHHhHhhhccccccccCCceeeeceeee
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW-----------------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAK   59 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~   59 (257)
                      +.++.||++... .+..+++|....                       .+|++++.         ++.|+|++++.+.+.
T Consensus        20 G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~   90 (335)
T PTZ00024         20 GTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMN---------EIKHENIMGLVDVYV   90 (335)
T ss_pred             CCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHH---------hCCCcceeeeeEEEe
Confidence            568899999854 566677775432                       23444444         888999999999999


Q ss_pred             ecCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeec
Q 044568           60 LTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFG  139 (257)
Q Consensus        60 ~~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg  139 (257)
                      ..+..++||||+. |+|.+++.  ....+++.....++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||
T Consensus        91 ~~~~~~lv~e~~~-~~l~~~l~--~~~~~~~~~~~~~~~ql~~aL~~LH~~---~i~H~dl~~~nill~~~~~~kl~dfg  164 (335)
T PTZ00024         91 EGDFINLVMDIMA-SDLKKVVD--RKIRLTESQVKCILLQILNGLNVLHKW---YFMHRDLSPANIFINSKGICKIADFG  164 (335)
T ss_pred             cCCcEEEEEeccc-cCHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHhC---CeecccccHHHeEECCCCCEEECCcc
Confidence            9999999999997 69999996  455689999999999999999999999   99999999999999999999999999


Q ss_pred             ccccCCC-----------------CcccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhH
Q 044568          140 LAKLPNE-----------------DFVIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEI  201 (257)
Q Consensus       140 ~~~~~~~-----------------~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~  201 (257)
                      .+.....                 ......++..|+|||.+.+. .++.++|+||+|+++||+++|..||........  
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~--  242 (335)
T PTZ00024        165 LARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGENEIDQ--  242 (335)
T ss_pred             ceeecccccccccccccccccccccccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHH--
Confidence            8865431                 11122346679999998764 468999999999999999999999976532211  


Q ss_pred             HHHHHHHHhhhh--hhhh---hh---------hcCC--CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          202 ILTNWVYKCFIN--RELN---KL---------VRGT--KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       202 ~~~~~~~~~~~~--~~~~---~~---------~~~~--~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                       +..........  ..+.   .+         .+..  .........+.+++.+||+.+|++|| ++|++.
T Consensus       243 -~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~  312 (335)
T PTZ00024        243 -LGRIFELLGTPNEDNWPQAKKLPLYTEFTPRKPKDLKTIFPNASDDAIDLLQSLLKLNPLERISAKEALK  312 (335)
T ss_pred             -HHHHHHHhCCCchhhCcchhhcccccccCcCCcccHHHhCcCCChHHHHHHHHHcCCCchhccCHHHHhc
Confidence             11110000000  0000   00         0000  01112346788999999999999999 999975

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=100.00  E-value=1e-31  Score=229.32  Aligned_cols=239  Identities=18%  Similarity=0.110  Sum_probs=172.1

Q ss_pred             ccccceeeecccC---CCCCeeeccch------------hhhHHHHhHhhhccccccccCCceeeeceeeeec--CceeE
Q 044568            4 TKLSNFYRSSFNA---RNSPWISRVSW------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT--SVSGK   66 (257)
Q Consensus         4 ~~~~~~y~~~~~~---~~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~--~~~~l   66 (257)
                      +.++.||+++...   +..+++|....            .+|++.+.         ++.|+|++++.+.+...  +..++
T Consensus        11 g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~---------~l~h~~i~~~~~~~~~~~~~~~~l   81 (316)
T cd07842          11 GTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLR---------ELKHENVVSLVEVFLEHADKSVYL   81 (316)
T ss_pred             CCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHH---------hcCCCCccceEEEEeCCCCceEEE
Confidence            5678999999765   56667765543            23444444         88899999999999988  88999


Q ss_pred             EEeecCCCCHHHHHhcc---CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCC----CCceEEeeec
Q 044568           67 IERPVRNGSLTDIIFCS---AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE----FWTAKILDFG  139 (257)
Q Consensus        67 V~E~~~~gsL~~~l~~~---~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~----~~~~kl~dfg  139 (257)
                      ||||+++ +|.+.+...   ....++...+..++.|++.||.|||++   +++|+||+|+||+++.    ++.+|++|||
T Consensus        82 v~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg  157 (316)
T cd07842          82 LFDYAEH-DLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSN---WVLHRDLKPANILVMGEGPERGVVKIGDLG  157 (316)
T ss_pred             EEeCCCc-CHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhC---CEeeCCCCHHHEEEcCCCCccceEEECCCc
Confidence            9999975 777776432   223688999999999999999999999   9999999999999999    8999999999


Q ss_pred             ccccCCCCc------ccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChh------hHHHHHH
Q 044568          140 LAKLPNEDF------VIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPE------EIILTNW  206 (257)
Q Consensus       140 ~~~~~~~~~------~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~------~~~~~~~  206 (257)
                      ++.......      ....++..|+|||.+.+. .++.++|+||||+++|+|++|+.||........      ...+..+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (316)
T cd07842         158 LARLFNAPLKPLADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIFKGREAKIKKSNPFQRDQLERI  237 (316)
T ss_pred             cccccCCCcccccccCCccccccccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhcCCCCcCCcccccccchhHHHHHHHH
Confidence            887543221      223456779999988764 578999999999999999999999976533220      0011111


Q ss_pred             HHHhh-----------hhhhhhh---hhcCCCCC-----------HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          207 VYKCF-----------INRELNK---LVRGTKVD-----------KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       207 ~~~~~-----------~~~~~~~---~~~~~~~~-----------~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .....           ..++...   .......+           ......+.+++.+||+.||++|| +.|+++
T Consensus       238 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~eil~  312 (316)
T cd07842         238 FEVLGTPTEKDWPDIKKMPEYDTLMKDFKTKTYPSNSLAKWMEKHKKPDSQGFDLLRKLLEYDPTKRITAEEALE  312 (316)
T ss_pred             HHHhCCCchhHHHHHhhcccchhhhhhccCCCCCCccHHHHHHhccCCCHHHHHHHHHHhcCCcccCcCHHHHhc
Confidence            00000           0000000   00000111           02345789999999999999999 999975

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.98  E-value=7.9e-32  Score=231.96  Aligned_cols=236  Identities=17%  Similarity=0.191  Sum_probs=172.0

Q ss_pred             ccccceeeeccc-CCCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeee-cCceeEEEee
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL-TSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~-~~~~~lV~E~   70 (257)
                      +.++.||++... ++..+++|...           +.+|++.+.         ++.|+|++++.+.+.. .+..++||||
T Consensus        21 g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~---------~l~hpniv~~~~~~~~~~~~~~lv~e~   91 (328)
T cd07856          21 GAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLK---------HLRHENIISLSDIFISPLEDIYFVTEL   91 (328)
T ss_pred             cCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHH---------hcCCCCeeeEeeeEecCCCcEEEEeeh
Confidence            467899999855 66667777532           233444444         8889999999998865 5678999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCccc
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVI  150 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~~  150 (257)
                      + +++|.+++.   ...++......++.|+++||.|||++   +++|+|++|+||+++.++.++|+|||.+.........
T Consensus        92 ~-~~~L~~~~~---~~~~~~~~~~~~~~ql~~aL~~LH~~---~iiH~dl~p~Nili~~~~~~~l~dfg~~~~~~~~~~~  164 (328)
T cd07856          92 L-GTDLHRLLT---SRPLEKQFIQYFLYQILRGLKYVHSA---GVVHRDLKPSNILINENCDLKICDFGLARIQDPQMTG  164 (328)
T ss_pred             h-ccCHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEeECCCCCEEeCccccccccCCCcCC
Confidence            9 469999885   34578888889999999999999999   9999999999999999999999999998765544444


Q ss_pred             ccCCCCccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHH--------HHHhhhhhh---hhh
Q 044568          151 DKRDKGYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNW--------VYKCFINRE---LNK  218 (257)
Q Consensus       151 ~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~--------~~~~~~~~~---~~~  218 (257)
                      ..++..|+|||.+.+ ..++.++|+||||+++|++++|..||...........+.++        .........   ...
T Consensus       165 ~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (328)
T cd07856         165 YVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITDLLGTPPDDVINTICSENTLRFVQS  244 (328)
T ss_pred             CcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhccchhhHHHHhh
Confidence            566778999998765 46889999999999999999999999754221111111110        000000000   000


Q ss_pred             hhcCCCCC-----HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          219 LVRGTKVD-----KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       219 ~~~~~~~~-----~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +......+     ......+.+++.+||+.+|++|| +.|++.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~ell~  287 (328)
T cd07856         245 LPKREPVPFSEKFKNADPSAIDLLEKMLVFDPQKRISAAEALA  287 (328)
T ss_pred             ccccCCCcHHHHcCCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            00000111     12347899999999999999999 999875

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.98  E-value=1.8e-31  Score=227.73  Aligned_cols=224  Identities=18%  Similarity=0.155  Sum_probs=170.3

Q ss_pred             ccccceeeecccCC-CCCeeeccch------------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFNAR-NSPWISRVSW------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~~~-~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||+|+...+ ..++++....            .++++.         +..+.|+|++++.+.+...+..++||||
T Consensus        26 g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~---------l~~l~h~~i~~~~~~~~~~~~~~lv~e~   96 (308)
T cd06634          26 GSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRF---------LQKLRHPNTIQYRGCYLREHTAWLVMEY   96 (308)
T ss_pred             CCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHH---------HHhCCCCCcccEEEEEEcCCeeEEEEEc
Confidence            56789999996544 4456665432            123333         3378899999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCccc
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVI  150 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~~  150 (257)
                      +. |++.+.+.. ....+++.++..++.|++.|+.|||++   +++|+||+|+||+++.++.++++|||.+..... ...
T Consensus        97 ~~-~~l~~~~~~-~~~~l~~~~~~~~~~~l~~~l~~LH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~-~~~  170 (308)
T cd06634          97 CL-GSASDLLEV-HKKPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP-ANX  170 (308)
T ss_pred             cC-CCHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHhEEECCCCcEEECCcccceeecC-ccc
Confidence            96 688888764 445689999999999999999999999   999999999999999999999999998765432 233


Q ss_pred             ccCCCCccCccccc---CCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCH
Q 044568          151 DKRDKGYMAPECYK---RTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDK  227 (257)
Q Consensus       151 ~~~~~~~~aPE~~~---~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (257)
                      ..++..|+|||.+.   ...++.++||||||+++|++++|..||.......   ....+.          ....+.....
T Consensus       171 ~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~---~~~~~~----------~~~~~~~~~~  237 (308)
T cd06634         171 FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMS---ALYHIA----------QNESPALQSG  237 (308)
T ss_pred             ccCCccccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCccccHHH---HHHHHh----------hcCCCCcCcc
Confidence            45678899999975   3457889999999999999999999986431110   000000          0000111122


Q ss_pred             HHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          228 KNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       228 ~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .....+.+++.+||+.+|++|| +.++++
T Consensus       238 ~~~~~~~~li~~cl~~~P~~Rp~~~~ll~  266 (308)
T cd06634         238 HWSEYFRNFVDSCLQKIPQDRPTSEVLLK  266 (308)
T ss_pred             cccHHHHHHHHHHhhCCcccCCCHHHHhh
Confidence            3456788999999999999999 999875

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.98  E-value=1.7e-32  Score=229.30  Aligned_cols=233  Identities=18%  Similarity=0.186  Sum_probs=190.8

Q ss_pred             ccccceeee------cccCCCCCeeecc-chhhhHHHHhHhhhccccccccCCceeeeceeeee-cCceeEEEeecCCCC
Q 044568            4 TKLSNFYRS------SFNARNSPWISRV-SWTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL-TSVSGKIERPVRNGS   75 (257)
Q Consensus         4 ~~~~~~y~~------~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~-~~~~~lV~E~~~~gs   75 (257)
                      +.|+.+|+|      ++++.+++.+|.+ ++..++++......+..+..+.|+|++++.+.+.. .+..+.++.++.-|+
T Consensus       295 GtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nll~V~~V~ie~~~~P~V~y~~~~~gN  374 (563)
T KOG1024|consen  295 GTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNLLSVLGVSIEDYATPFVLYPATGVGN  374 (563)
T ss_pred             CchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCccceeEEEeeccCcceEEEeccCcch
Confidence            468999999      7777777777764 56888888887777777788889999999998875 567788899999999


Q ss_pred             HHHHHh-----cc-CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcc
Q 044568           76 LTDIIF-----CS-AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFV  149 (257)
Q Consensus        76 L~~~l~-----~~-~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~  149 (257)
                      |+.++.     +. ..++++..+.+.++.|++.|++|||++   +++|.||.++|+++++.-.+||+|=.+++-......
T Consensus       375 LK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~---~ViHkDiAaRNCvIdd~LqVkltDsaLSRDLFP~DY  451 (563)
T KOG1024|consen  375 LKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNH---GVIHKDIAARNCVIDDQLQVKLTDSALSRDLFPGDY  451 (563)
T ss_pred             HHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhc---CcccchhhhhcceehhheeEEeccchhccccCcccc
Confidence            999997     22 345678889999999999999999999   999999999999999999999999888874333322


Q ss_pred             cc-----cCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc-C
Q 044568          150 ID-----KRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR-G  222 (257)
Q Consensus       150 ~~-----~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  222 (257)
                      ..     .....|++||.+.+..|+.++|+||||+++||++| |+.|+..-++                 .+....++ +
T Consensus       452 hcLGDnEnRPvkWMslEal~n~~yssasDvWsfGVllWELmtlg~~PyaeIDP-----------------fEm~~ylkdG  514 (563)
T KOG1024|consen  452 HCLGDNENRPVKWMSLEALQNSHYSSASDVWSFGVLLWELMTLGKLPYAEIDP-----------------FEMEHYLKDG  514 (563)
T ss_pred             cccCCCCCCcccccCHHHHhhhhhcchhhhHHHHHHHHHHHhcCCCCccccCH-----------------HHHHHHHhcc
Confidence            22     23345999999999999999999999999999999 9999863311                 12222222 2


Q ss_pred             C--CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHh
Q 044568          223 T--KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMM  256 (257)
Q Consensus       223 ~--~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~  256 (257)
                      .  ..|.+++.+|..++.-||..+|++|| +++++.-
T Consensus       515 yRlaQP~NCPDeLf~vMacCWallpeeRPsf~Qlv~c  551 (563)
T KOG1024|consen  515 YRLAQPFNCPDELFTVMACCWALLPEERPSFSQLVIC  551 (563)
T ss_pred             ceecCCCCCcHHHHHHHHHHHhcCcccCCCHHHHHHH
Confidence            2  56888999999999999999999999 9998764

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.98  E-value=2e-31  Score=222.27  Aligned_cols=224  Identities=18%  Similarity=0.151  Sum_probs=171.4

Q ss_pred             ccccceeeeccc-CCCCCeeeccc--------------hhhhHHHHhHhhhccccccccCCceeeeceeeeec--CceeE
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS--------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT--SVSGK   66 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~--------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~--~~~~l   66 (257)
                      +.++.||++... ++..+++|...              +.+|++.+.         ++.|+|++++.+.+...  ...++
T Consensus        13 g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~---------~l~h~~i~~~~~~~~~~~~~~~~~   83 (264)
T cd06653          13 GAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLK---------NLRHDRIVQYYGCLRDPEEKKLSI   83 (264)
T ss_pred             CCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHH---------HcCCCCcceEEEEEEcCCCCEEEE
Confidence            567899999864 46666777542              122333333         88899999999988764  45789


Q ss_pred             EEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC
Q 044568           67 IERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE  146 (257)
Q Consensus        67 V~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~  146 (257)
                      |+||+++++|.+++.  ....+++.....++.|++.|+.|||++   +++|+|++|+||+++.++.++|+|||+++....
T Consensus        84 v~e~~~~~~L~~~~~--~~~~l~~~~~~~~~~~i~~al~~LH~~---~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~  158 (264)
T cd06653          84 FVEYMPGGSIKDQLK--AYGALTENVTRRYTRQILQGVSYLHSN---MIVHRDIKGANILRDSAGNVKLGDFGASKRIQT  158 (264)
T ss_pred             EEEeCCCCcHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCEEECcccccccccc
Confidence            999999999999997  345588999999999999999999999   999999999999999999999999999875322


Q ss_pred             C------cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhh
Q 044568          147 D------FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLV  220 (257)
Q Consensus       147 ~------~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (257)
                      .      .....++..|+|||.+.+..++.++|+||||+++|++++|+.||.......   ....          ....-
T Consensus       159 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~---~~~~----------~~~~~  225 (264)
T cd06653         159 ICMSGTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAEYEAMA---AIFK----------IATQP  225 (264)
T ss_pred             ccccCccccccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCccCHHH---HHHH----------HHcCC
Confidence            1      123356778999999988888999999999999999999999997441110   0000          00000


Q ss_pred             cCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          221 RGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       221 ~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .....+....+.+.+++.+||+ +|..|| +.+++.
T Consensus       226 ~~~~~p~~~~~~~~~~i~~~l~-~~~~r~~~~~~~~  260 (264)
T cd06653         226 TKPMLPDGVSDACRDFLKQIFV-EEKRRPTAEFLLR  260 (264)
T ss_pred             CCCCCCcccCHHHHHHHHHHhc-CcccCccHHHHhc
Confidence            1123455566789999999999 579999 888864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.98  E-value=8.7e-32  Score=243.75  Aligned_cols=207  Identities=16%  Similarity=0.131  Sum_probs=149.1

Q ss_pred             cccCCceeeeceeeeecCceeEEEeecCCCCHHHHHhccC---CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCC
Q 044568           45 RIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSA---ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIK  121 (257)
Q Consensus        45 ~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~---~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~  121 (257)
                      ++.|+||+++.+++...+..++|+|++. ++|.+++....   .......++..++.|++.||.|||++   +|+|||||
T Consensus       219 ~l~HpnIv~l~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~~---gIiHrDLK  294 (501)
T PHA03210        219 RLNHENILKIEEILRSEANTYMITQKYD-FDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHDK---KLIHRDIK  294 (501)
T ss_pred             hCCCCCcCcEeEEEEECCeeEEEEeccc-cCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHhC---CeecCCCC
Confidence            8899999999999999999999999995 57888775321   12234566778999999999999999   99999999


Q ss_pred             CCceeeCCCCceEEeeecccccCCCCc----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCC
Q 044568          122 PQNILMDEFWTAKILDFGLAKLPNEDF----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASK  197 (257)
Q Consensus       122 ~~nil~~~~~~~kl~dfg~~~~~~~~~----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~  197 (257)
                      |+|||++.++.+||+|||++.......    ....|+..|+|||.+.+..++.++|||||||++|||++|..++......
T Consensus       295 P~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~~~~~p~~~~~~  374 (501)
T PHA03210        295 LENIFLNCDGKIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDMLSHDFCPIGDGGG  374 (501)
T ss_pred             HHHEEECCCCCEEEEeCCCceecCcccccccccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCccCCCC
Confidence            999999999999999999987543321    2346889999999999989999999999999999999988654332221


Q ss_pred             hhhHHHHHHHHHhh-hh-------hhhhhhhcCC-------CC-----CHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          198 PEEIILTNWVYKCF-IN-------RELNKLVRGT-------KV-----DKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       198 ~~~~~~~~~~~~~~-~~-------~~~~~~~~~~-------~~-----~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .....+........ ..       ..+.+.+...       ..     .......+.+++.+||+.||.+|| +.|+++
T Consensus       375 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~li~kmL~~DP~~Rpsa~elL~  453 (501)
T PHA03210        375 KPGKQLLKIIDSLSVCDEEFPDPPCKLFDYIDSAEIDHAGHSVPPLIRNLGLPADFEYPLVKMLTFDWHLRPGAAELLA  453 (501)
T ss_pred             CHHHHHHHHHHhcccChhhcCCcHHHHHHHhhhhhcccCccchhhHHHhcCCChHHHHHHHHHhccCcccCcCHHHHhh
Confidence            11111111110000 00       0000010000       00     001224567789999999999999 999975

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.98  E-value=1.5e-31  Score=225.72  Aligned_cols=228  Identities=17%  Similarity=0.129  Sum_probs=170.8

Q ss_pred             ccccceeeeccc----CCCCCeeeccch-------------hhhHHHHhHhhhccccccc-cCCceeeeceeeeecCcee
Q 044568            4 TKLSNFYRSSFN----ARNSPWISRVSW-------------TADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVSG   65 (257)
Q Consensus         4 ~~~~~~y~~~~~----~~~~~~i~~~~~-------------~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~~   65 (257)
                      +.++.||+++..    ++..+++|....             .+|++++.         ++ .|+|++++.+.+......+
T Consensus        11 G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~---------~~~~~~~i~~~~~~~~~~~~~~   81 (288)
T cd05583          11 GAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLE---------AVRRCPFLVTLHYAFQTDTKLH   81 (288)
T ss_pred             CCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHH---------hccCCcchhhhheeeecCCEEE
Confidence            567889988743    345566665432             22333333         56 4899999999999999999


Q ss_pred             EEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC
Q 044568           66 KIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN  145 (257)
Q Consensus        66 lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~  145 (257)
                      +||||+++|+|.+++.  ....+++.....++.|++.||.|||+.   +++|+|++|.||+++.++.++++|||++....
T Consensus        82 lv~e~~~~~~L~~~~~--~~~~~~~~~~~~~~~ql~~~l~~lH~~---~~~H~dl~p~nil~~~~~~~~l~dfg~~~~~~  156 (288)
T cd05583          82 LILDYVNGGELFTHLY--QREHFTESEVRVYIAEIVLALDHLHQL---GIIYRDIKLENILLDSEGHVVLTDFGLSKEFL  156 (288)
T ss_pred             EEEecCCCCcHHHHHh--hcCCcCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEEEECccccccc
Confidence            9999999999999997  345689999999999999999999999   99999999999999999999999999876533


Q ss_pred             CCc----ccccCCCCccCcccccCCC--CCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhh
Q 044568          146 EDF----VIDKRDKGYMAPECYKRTP--ISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKL  219 (257)
Q Consensus       146 ~~~----~~~~~~~~~~aPE~~~~~~--~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (257)
                      ...    ....++..|++||.+.+..  .+.++|+||||+++|||++|..||..........   .....      ....
T Consensus       157 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~---~~~~~------~~~~  227 (288)
T cd05583         157 AEEEERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVDGEQNSQS---EISRR------ILKS  227 (288)
T ss_pred             cccccccccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcccCcccchHH---HHHHH------HHcc
Confidence            221    1234677899999987654  6789999999999999999999996442211111   11000      0000


Q ss_pred             hcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHh
Q 044568          220 VRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMM  256 (257)
Q Consensus       220 ~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~  256 (257)
                        ....+......+.+++.+||+.||++|| +.++.+.
T Consensus       228 --~~~~~~~~~~~l~~li~~~l~~~p~~R~t~~~~~~~  263 (288)
T cd05583         228 --KPPFPKTMSAEARDFIQKLLEKDPKKRLGANGADEI  263 (288)
T ss_pred             --CCCCCcccCHHHHHHHHHHhcCCHhhccCcchHHHH
Confidence              1122333456788999999999999999 8777543

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.98  E-value=1.8e-31  Score=224.46  Aligned_cols=239  Identities=16%  Similarity=0.163  Sum_probs=173.4

Q ss_pred             ccccceeeecccC-CCCCeeeccch----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +.++.||+++... +..+++|....          .+|++.+.         ++.|+|++++.+.+...+..++||||++
T Consensus        11 g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~i~~~~~~~~~~~~~~lv~e~~~   81 (284)
T cd07836          11 GTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMK---------ELKHENIVRLHDVIHTENKLMLVFEYMD   81 (284)
T ss_pred             CCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHH---------hhcCCCEeeeeeeEeeCCcEEEEEecCC
Confidence            4578899999764 55566775442          23333333         7789999999999999999999999998


Q ss_pred             CCCHHHHHhccC-CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---c
Q 044568           73 NGSLTDIIFCSA-ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---F  148 (257)
Q Consensus        73 ~gsL~~~l~~~~-~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~  148 (257)
                      + +|.+++.... ...+++..+..++.|++.||.|||++   +++|+|++|+||++++++.++++|||.+......   .
T Consensus        82 ~-~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~~~~~~~  157 (284)
T cd07836          82 K-DLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHEN---RVLHRDLKPQNLLINKRGELKLADFGLARAFGIPVNTF  157 (284)
T ss_pred             c-cHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEECCCCcEEEeecchhhhhcCCcccc
Confidence            4 8999886422 35689999999999999999999999   9999999999999999999999999988643321   1


Q ss_pred             ccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHH-------Hhhh-hhhhhhh
Q 044568          149 VIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVY-------KCFI-NRELNKL  219 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~  219 (257)
                      ....++..|++||.+.+. .++.++|+||||+++|++++|+.||.............+...       +... .+....-
T Consensus       158 ~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (284)
T cd07836         158 SNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGTNNEDQLLKIFRIMGTPTESTWPGISQLPEYKPT  237 (284)
T ss_pred             ccccccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhHHHHhcCchhccc
Confidence            234557789999988654 468899999999999999999999976533221111111000       0000 0000000


Q ss_pred             hcCC------CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          220 VRGT------KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       220 ~~~~------~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ....      .........+.+++.+||+.||.+|| +.|+++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~  280 (284)
T cd07836         238 FPRYPPQDLQQLFPHADPLGIDLLHRLLQLNPELRISAHDALQ  280 (284)
T ss_pred             ccCCChHHHHHHhhhcCcHHHHHHHHHhcCCcccCCCHHHHhc
Confidence            0000      01112346788999999999999999 999975

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.98  E-value=2.4e-32  Score=240.01  Aligned_cols=236  Identities=16%  Similarity=0.148  Sum_probs=179.7

Q ss_pred             ccccceeeecccCCCCCee-eccchhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHHHhc
Q 044568            4 TKLSNFYRSSFNARNSPWI-SRVSWTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFC   82 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~   82 (257)
                      +-|+.||++...++...+. |.++...+-+.-++...-..+....||+|+.+++.++.++..+|..|||+||-.+.++-+
T Consensus        43 GAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwiliEFC~GGAVDaimlE  122 (1187)
T KOG0579|consen   43 GAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILIEFCGGGAVDAIMLE  122 (1187)
T ss_pred             ccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEEeecCCchHhHHHHH
Confidence            3578899998886665543 333322222222211111133366799999999999999999999999999999999886


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---cccccCCCCccC
Q 044568           83 SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---FVIDKRDKGYMA  159 (257)
Q Consensus        83 ~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~~~~~~~~~~~a  159 (257)
                       -+..|++.+..-++.|++.||.|||++   +|+|||||+.|||+..+|.++|+|||++-.....   .....||+.|+|
T Consensus       123 -L~r~LtE~QIqvvc~q~ldALn~LHs~---~iIHRDLKAGNiL~TldGdirLADFGVSAKn~~t~qkRDsFIGTPYWMA  198 (1187)
T KOG0579|consen  123 -LGRVLTEDQIQVVCYQVLDALNWLHSQ---NIIHRDLKAGNILLTLDGDIRLADFGVSAKNKSTRQKRDSFIGTPYWMA  198 (1187)
T ss_pred             -hccccchHHHHHHHHHHHHHHHHHhhc---chhhhhccccceEEEecCcEeeecccccccchhHHhhhccccCCccccc
Confidence             788999999999999999999999999   9999999999999999999999999987543322   256689999999


Q ss_pred             ccccc-----CCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHH
Q 044568          160 PECYK-----RTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLV  234 (257)
Q Consensus       160 PE~~~-----~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  234 (257)
                      ||+..     ..+|+.++||||||++|.||..+.+|-..-.       -.+...+ ...++.-.+    ..|......+.
T Consensus       199 PEVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHheln-------pMRVllK-iaKSePPTL----lqPS~Ws~~F~  266 (1187)
T KOG0579|consen  199 PEVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHHELN-------PMRVLLK-IAKSEPPTL----LQPSHWSRSFS  266 (1187)
T ss_pred             chheeeccccCCCchhhhhHHhhhhHHHHHhccCCCccccc-------hHHHHHH-HhhcCCCcc----cCcchhhhHHH
Confidence            99874     4579999999999999999999888865221       0111100 001111112    33556778899


Q ss_pred             HHHHHcccCCCCCCC-hHHHHH
Q 044568          235 KVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       235 ~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +++.+||.+||..|| ++++++
T Consensus       267 DfLk~cL~Knp~~Rp~aaqll~  288 (1187)
T KOG0579|consen  267 DFLKRCLVKNPRNRPPAAQLLK  288 (1187)
T ss_pred             HHHHHHHhcCCccCCCHHHHhh
Confidence            999999999999999 999975

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.98  E-value=1.7e-31  Score=227.76  Aligned_cols=238  Identities=17%  Similarity=0.155  Sum_probs=170.9

Q ss_pred             ccccceeeecccC-CCCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeec--CceeEEEe
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT--SVSGKIER   69 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~--~~~~lV~E   69 (257)
                      +.++.||++.... ++.+++|....           .+|++.+.         ++.|+|++++.+.+...  +..++|||
T Consensus        18 g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~i~~~~~~~~~~~~~~~~lv~e   88 (309)
T cd07845          18 GTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLL---------NLRHPNIVELKEVVVGKHLDSIFLVME   88 (309)
T ss_pred             cCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHH---------hCCCCCCcceEEEEecCCCCeEEEEEe
Confidence            5678999999754 56667776542           23444444         88999999999887654  56899999


Q ss_pred             ecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC--
Q 044568           70 PVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED--  147 (257)
Q Consensus        70 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~--  147 (257)
                      |+. ++|.+++.. ....+++.++..++.|++.|+.|||++   +++|+||+|+||+++.++.++|+|||.+......  
T Consensus        89 ~~~-~~l~~~l~~-~~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~kL~dfg~~~~~~~~~~  163 (309)
T cd07845          89 YCE-QDLASLLDN-MPTPFSESQVKCLMLQLLRGLQYLHEN---FIIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPAK  163 (309)
T ss_pred             cCC-CCHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEECccceeeecCCccC
Confidence            996 589988875 346789999999999999999999999   9999999999999999999999999998754332  


Q ss_pred             -cccccCCCCccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHH-------HHhhhhhhhhh
Q 044568          148 -FVIDKRDKGYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWV-------YKCFINRELNK  218 (257)
Q Consensus       148 -~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~-------~~~~~~~~~~~  218 (257)
                       ......+..|+|||.+.+ ..++.++|+||+|+++|||++|..||................       ++.........
T Consensus       164 ~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (309)
T cd07845         164 PMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPGKSEIEQLDLIIQLLGTPNESIWPGFSDLPLVG  243 (309)
T ss_pred             CCCcccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChhhchhhhcccccc
Confidence             122234667999999875 457899999999999999999999997543221111111100       00000000000


Q ss_pred             hh--cCCCC------CHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          219 LV--RGTKV------DKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       219 ~~--~~~~~------~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ..  .....      .....+.+.+++.+||+.||++|| +.|+++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~~il~  289 (309)
T cd07845         244 KFTLPKQPYNNLKHKFPWLSEAGLRLLNFLLMYDPKKRATAEEALE  289 (309)
T ss_pred             cccccCCCCCchHHhccccCHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence            00  00000      011246678899999999999999 999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.98  E-value=2.4e-31  Score=231.10  Aligned_cols=232  Identities=16%  Similarity=0.160  Sum_probs=169.7

Q ss_pred             ccccceeeeccc-CCCCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeec------Ccee
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT------SVSG   65 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~------~~~~   65 (257)
                      +.++.||++... ++..+++|...-           .+|++.+.         ++.|+|++++.+.+...      ...+
T Consensus        27 g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~~~~~~~~~~~~~   97 (353)
T cd07850          27 GAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMK---------LVNHKNIIGLLNVFTPQKSLEEFQDVY   97 (353)
T ss_pred             CCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHH---------hcCCCCCcceeeeeccCCCccccCcEE
Confidence            467889999855 566677776531           12333333         78899999999877543      3579


Q ss_pred             EEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC
Q 044568           66 KIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN  145 (257)
Q Consensus        66 lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~  145 (257)
                      +||||+. ++|.+.+..    .++...+..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||.+....
T Consensus        98 lv~e~~~-~~l~~~~~~----~l~~~~~~~~~~ql~~aL~~LH~~---gi~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~  169 (353)
T cd07850          98 LVMELMD-ANLCQVIQM----DLDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAG  169 (353)
T ss_pred             EEEeccC-CCHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEccCccceeCC
Confidence            9999996 589998853    288899999999999999999999   99999999999999999999999999987544


Q ss_pred             CCc--ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHh-------------
Q 044568          146 EDF--VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKC-------------  210 (257)
Q Consensus       146 ~~~--~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~-------------  210 (257)
                      ...  ....++..|+|||.+.+..++.++|+||||+++|+|++|+.||........   ........             
T Consensus       170 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  246 (353)
T cd07850         170 TSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPGTDHIDQ---WNKIIEQLGTPSDEFMSRLQP  246 (353)
T ss_pred             CCCCCCCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHHHHCCCCCCCCCHHHH---HHHHHHhcCCCCHHHHHHhhh
Confidence            322  233567789999999988899999999999999999999999975422110   10000000             


Q ss_pred             ----hhh-------hhhhhhhcCC-------CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          211 ----FIN-------RELNKLVRGT-------KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       211 ----~~~-------~~~~~~~~~~-------~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                          +..       .....+.+..       ..+......+.+++.+||+.||++|| +.|+++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eiL~  310 (353)
T cd07850         247 TVRNYVENRPKYAGYSFEELFPDVLFPPDSESHNKLKASQARDLLSKMLVIDPEKRISVDDALQ  310 (353)
T ss_pred             hhhHHhhcCCCCCCcchhhhCcccccCcccccccccchhHHHHHHHHHcCCChhhCcCHHHHhc
Confidence                000       0000111100       00123356788999999999999999 999975

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.98  E-value=2.2e-31  Score=219.71  Aligned_cols=223  Identities=17%  Similarity=0.137  Sum_probs=174.9

Q ss_pred             ccccceeeecccC-CCCCeeeccch------------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.+|+++... ++.+++|...-            .++++.         +.++.|+|++++.+.+...+..++||||
T Consensus         4 G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~---------l~~l~h~~i~~~~~~~~~~~~~~~v~e~   74 (250)
T cd05123           4 GSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNI---------LSRINHPFIVKLHYAFQTEEKLYLVLEY   74 (250)
T ss_pred             CCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHH---------HHHcCCCcHHHHHHHeecCCeeEEEEec
Confidence            5678999999764 55556665332            222333         3378899999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---  147 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---  147 (257)
                      +++++|.+++.  ....+++.+...++.|++.|+.|+|+.   +++|+|++|.||+++.++.++++|||.+......   
T Consensus        75 ~~~~~L~~~l~--~~~~l~~~~~~~~~~qi~~~l~~lh~~---~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~~  149 (250)
T cd05123          75 APGGELFSHLS--KEGRFSEERARFYAAEIVLALEYLHSL---GIIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSR  149 (250)
T ss_pred             CCCCcHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcceEEEcCCCcEEEeecCcceecccCCCc
Confidence            99999999997  344689999999999999999999999   9999999999999999999999999988754332   


Q ss_pred             cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCH
Q 044568          148 FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDK  227 (257)
Q Consensus       148 ~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (257)
                      .....++..|++||...+...+.++|+||||+++|++++|+.||.....   .......         ..   .....+.
T Consensus       150 ~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~---~~~~~~~---------~~---~~~~~~~  214 (250)
T cd05123         150 TNTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAEDR---KEIYEKI---------LK---DPLRFPE  214 (250)
T ss_pred             ccCCcCCccccChHHhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH---HHHHHHH---------hc---CCCCCCC
Confidence            2344567789999999888888999999999999999999999964421   1111000         00   1112334


Q ss_pred             HHHHHHHHHHHHcccCCCCCCC-h---HHHHH
Q 044568          228 KNLENLVKVGLWCVQDEPALRP-M---KCAVM  255 (257)
Q Consensus       228 ~~~~~l~~l~~~cl~~~p~~RP-~---~ei~~  255 (257)
                      ..+..+.+++.+||..||++|| +   .++.+
T Consensus       215 ~~~~~l~~~i~~~l~~~p~~R~~~~~~~~l~~  246 (250)
T cd05123         215 FLSPEARDLISGLLQKDPTKRLGSGGAEEIKA  246 (250)
T ss_pred             CCCHHHHHHHHHHhcCCHhhCCCcccHHHHHh
Confidence            4467889999999999999999 8   66654

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.98  E-value=2e-31  Score=221.61  Aligned_cols=234  Identities=17%  Similarity=0.198  Sum_probs=171.1

Q ss_pred             ccccceeeecccCCCCC----eeeccch--hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHH
Q 044568            4 TKLSNFYRSSFNARNSP----WISRVSW--TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLT   77 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~----~i~~~~~--~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~   77 (257)
                      ++++.||+++.......    +++....  .+.-+............++.|+|++++.+.+...+..++||||+++++|.
T Consensus        11 g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~   90 (260)
T cd08222          11 GSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCIITEYCEGRDLD   90 (260)
T ss_pred             CCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEEEEEeCCCCCHH
Confidence            57889999987665332    2222110  00000111111111233888999999999999999999999999999999


Q ss_pred             HHHhcc--CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---ccccc
Q 044568           78 DIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---FVIDK  152 (257)
Q Consensus        78 ~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~~~~~  152 (257)
                      +.+...  ....+++.++..++.|++.|+.|||++   +++|+|++|+||+++. +.++++|||.+......   .....
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~h~~l~~~nili~~-~~~~l~d~g~~~~~~~~~~~~~~~~  166 (260)
T cd08222          91 CKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQR---RILHRDLKAKNIFLKN-NLLKIGDFGVSRLLMGSCDLATTFT  166 (260)
T ss_pred             HHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHc---CccccCCChhheEeec-CCEeecccCceeecCCCcccccCCC
Confidence            998642  346789999999999999999999999   9999999999999986 47999999988654322   12345


Q ss_pred             CCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHH
Q 044568          153 RDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLEN  232 (257)
Q Consensus       153 ~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (257)
                      ++..|+|||.+....++.++|+||||+++|++++|..||....  . .....    .      ... ......+...+..
T Consensus       167 ~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~~~--~-~~~~~----~------~~~-~~~~~~~~~~~~~  232 (260)
T cd08222         167 GTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQN--F-LSVVL----R------IVE-GPTPSLPETYSRQ  232 (260)
T ss_pred             CCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCcc--H-HHHHH----H------HHc-CCCCCCcchhcHH
Confidence            6778999999988888899999999999999999999996331  1 00000    0      000 0111234455678


Q ss_pred             HHHHHHHcccCCCCCCC-hHHHHH
Q 044568          233 LVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       233 l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +.+++.+||+.+|++|| +.|+++
T Consensus       233 ~~~li~~~l~~~p~~Rp~~~~il~  256 (260)
T cd08222         233 LNSIMQSMLNKDPSLRPSAAEILR  256 (260)
T ss_pred             HHHHHHHHhcCChhhCcCHHHHhh
Confidence            99999999999999999 999975

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.98  E-value=1.9e-31  Score=226.06  Aligned_cols=233  Identities=17%  Similarity=0.191  Sum_probs=169.3

Q ss_pred             ccccceeeecccC-CCCCeeeccchh----hhHHHHh-HhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHH
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSWT----ADIEVLS-VAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLT   77 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~~----~~~~~~~-~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~   77 (257)
                      +.++.||+++... +..+++|.....    ...+.+. ...   ......|+|++++.+.+......++||||++ +++.
T Consensus        26 g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~---~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~-~~l~  101 (296)
T cd06618          26 GTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDV---VLKSHDCPYIVKCYGYFITDSDVFICMELMS-TCLD  101 (296)
T ss_pred             cCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHH---HHhccCCCchHhhheeeecCCeEEEEeeccC-cCHH
Confidence            5678999999876 666677765421    1111111 111   1113359999999999999999999999985 5788


Q ss_pred             HHHhccCCCCCCHHHHHHHHHHHHHHHHHHhh-CCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC--cccccCC
Q 044568           78 DIIFCSAERNPYWNQRVRIALDVAKGILYLHD-ECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED--FVIDKRD  154 (257)
Q Consensus        78 ~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~--~~~~~~~  154 (257)
                      +.+.. ....+++.++..++.|++.|+.|||+ .   +++|+||+|+||++++++.++|+|||.+......  .....++
T Consensus       102 ~l~~~-~~~~l~~~~~~~i~~~i~~~l~~lH~~~---~i~H~dl~p~nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~  177 (296)
T cd06618         102 KLLKR-IQGPIPEDILGKMTVAIVKALHYLKEKH---GVIHRDVKPSNILLDASGNVKLCDFGISGRLVDSKAKTRSAGC  177 (296)
T ss_pred             HHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHhhC---CEecCCCcHHHEEEcCCCCEEECccccchhccCCCcccCCCCC
Confidence            77764 34578999999999999999999997 6   9999999999999999999999999988654322  1233466


Q ss_pred             CCccCcccccCCC----CCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHH
Q 044568          155 KGYMAPECYKRTP----ISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNL  230 (257)
Q Consensus       155 ~~~~aPE~~~~~~----~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (257)
                      ..|+|||.+....    ++.++|+||||+++|+|++|+.||......  ...+..+         ...............
T Consensus       178 ~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~--~~~~~~~---------~~~~~~~~~~~~~~~  246 (296)
T cd06618         178 AAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKNCKTE--FEVLTKI---------LQEEPPSLPPNEGFS  246 (296)
T ss_pred             ccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCcchhH--HHHHHHH---------hcCCCCCCCCCCCCC
Confidence            7899999987543    788999999999999999999999643111  0011110         000000011111245


Q ss_pred             HHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          231 ENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       231 ~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ..+.+++.+||+.||.+|| +.++++
T Consensus       247 ~~l~~li~~~l~~~p~~Rp~~~~il~  272 (296)
T cd06618         247 PDFCSFVDLCLTKDHRKRPKYRELLQ  272 (296)
T ss_pred             HHHHHHHHHHccCChhhCCCHHHHhc
Confidence            6789999999999999999 999975

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.98  E-value=2.8e-31  Score=225.32  Aligned_cols=235  Identities=16%  Similarity=0.133  Sum_probs=170.0

Q ss_pred             ccccceeeecccC-CCCCeeeccchh-----------hhHHHHhHhhhccccccccCCceeeeceeeeecC---------
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSWT-----------ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTS---------   62 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~~-----------~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~---------   62 (257)
                      +.++.||+|.... +..+++|.....           +|++.+.         +++|+|++++.+.+...+         
T Consensus        18 g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~---------~l~h~~i~~~~~~~~~~~~~~~~~~~~   88 (302)
T cd07864          18 GTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILR---------QLNHRNIVNLKEIVTDKQDALDFKKDK   88 (302)
T ss_pred             cCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHH---------hCCCCCeeeeeheecCcchhhhccccC
Confidence            4578999999765 556667765432           2333333         889999999998887654         


Q ss_pred             -ceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeeccc
Q 044568           63 -VSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA  141 (257)
Q Consensus        63 -~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~  141 (257)
                       ..++|+||+++ ++.+.+.. ....+++..+..++.|++.||.|||++   +++|+|++|+||++++++.+||+|||.+
T Consensus        89 ~~~~lv~e~~~~-~l~~~l~~-~~~~~~~~~~~~i~~qi~~aL~~LH~~---~i~H~dl~p~nili~~~~~~kl~dfg~~  163 (302)
T cd07864          89 GAFYLVFEYMDH-DLMGLLES-GLVHFSEDHIKSFMKQLLEGLNYCHKK---NFLHRDIKCSNILLNNKGQIKLADFGLA  163 (302)
T ss_pred             CcEEEEEcccCc-cHHHHHhc-CCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCcEEeCccccc
Confidence             78999999975 78787764 355799999999999999999999999   9999999999999999999999999988


Q ss_pred             ccCCCCc----ccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhh--h
Q 044568          142 KLPNEDF----VIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFIN--R  214 (257)
Q Consensus       142 ~~~~~~~----~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~--~  214 (257)
                      .......    ....++..|++||.+.+. .++.++||||||+++||+++|+.||.......   .+..........  .
T Consensus       164 ~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~  240 (302)
T cd07864         164 RLYNSEESRPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIFQANQELA---QLELISRLCGSPCPA  240 (302)
T ss_pred             ccccCCcccccccceeccCccChHHhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCChHH---HHHHHHHHhCCCChh
Confidence            7543222    222346679999988654 46889999999999999999999997542211   111111100000  0


Q ss_pred             hhhhhhc--------C------C--CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          215 ELNKLVR--------G------T--KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       215 ~~~~~~~--------~------~--~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .......        .      .  ......+..+.+++.+||+.+|.+|| +.++++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~  298 (302)
T cd07864         241 VWPDVIKLPYFNTMKPKKQYRRRLREEFSFIPTPALDLLDHMLTLDPSKRCTAEEALN  298 (302)
T ss_pred             hcccccccccccccccccccccchhhhcCCCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            0000000        0      0  00112356789999999999999999 999975

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.98  E-value=1.3e-31  Score=224.45  Aligned_cols=229  Identities=16%  Similarity=0.157  Sum_probs=174.0

Q ss_pred             ccccceeeeccc-CCCCCeeeccch-----hhhHHHHhHhhhcccccccc-CCceeeeceeeeecCceeEEEeecCCCCH
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW-----TADIEVLSVAMRGSKCTRIR-GGLLLNVPVRAKLTSVSGKIERPVRNGSL   76 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~-----~~~~~~~~~~~~~~~~~~~~-h~~i~~~~~~~~~~~~~~lV~E~~~~gsL   76 (257)
                      +.++.||+++.. ++..+++|....     .+..+.+.  .......++. |+|++++.+.+...+..++||||+++++|
T Consensus        12 g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~--~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L   89 (280)
T cd05581          12 GSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVK--IEKEVLTRLNGHPGIIKLYYTFQDEENLYFVLEYAPNGEL   89 (280)
T ss_pred             CCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHH--HHHHHHHhcccCCCchhHHHHhcCCceEEEEEcCCCCCcH
Confidence            567899999976 455556665432     01111110  0001222666 99999999999999999999999999999


Q ss_pred             HHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc--------
Q 044568           77 TDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF--------  148 (257)
Q Consensus        77 ~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~--------  148 (257)
                      .+++..  ...+++.++..++.|++.||.+||++   +++|+|++|+||+++.++.++++|||++.......        
T Consensus        90 ~~~l~~--~~~l~~~~~~~i~~ql~~~l~~Lh~~---~~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~~~~~~~~~~~~  164 (280)
T cd05581          90 LQYIRK--YGSLDEKCTRFYAAEILLALEYLHSK---GIIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPESNKGD  164 (280)
T ss_pred             HHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHeEECCCCCEEecCCccccccCCccccccCCCC
Confidence            999974  45799999999999999999999999   99999999999999999999999999877543222        


Q ss_pred             ---------------ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhh
Q 044568          149 ---------------VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFIN  213 (257)
Q Consensus       149 ---------------~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~  213 (257)
                                     ....++..|++||......++.++|+||||++++++++|..||.....   .....         
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~---~~~~~---------  232 (280)
T cd05581         165 ATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSNE---YLTFQ---------  232 (280)
T ss_pred             CccccccccccccccccccCCccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCccH---HHHHH---------
Confidence                           122456679999998888889999999999999999999999975521   11010         


Q ss_pred             hhhhhhhc-CCCCCHHHHHHHHHHHHHcccCCCCCCC-h----HHHHH
Q 044568          214 RELNKLVR-GTKVDKKNLENLVKVGLWCVQDEPALRP-M----KCAVM  255 (257)
Q Consensus       214 ~~~~~~~~-~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~----~ei~~  255 (257)
                          .... ....+...++.+.+++.+||+.+|.+|| +    +++++
T Consensus       233 ----~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~ll~  276 (280)
T cd05581         233 ----KILKLEYSFPPNFPPDAKDLIEKLLVLDPQDRLGVNEGYDELKA  276 (280)
T ss_pred             ----HHHhcCCCCCCccCHHHHHHHHHHhcCCHhhCCCcccCHHHHhc
Confidence                1111 1123344467799999999999999999 9    88865

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.98  E-value=2.1e-31  Score=235.30  Aligned_cols=184  Identities=17%  Similarity=0.245  Sum_probs=155.1

Q ss_pred             ccccceeeec-ccCCCCCeeeccc----h----hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCC
Q 044568            4 TKLSNFYRSS-FNARNSPWISRVS----W----TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNG   74 (257)
Q Consensus         4 ~~~~~~y~~~-~~~~~~~~i~~~~----~----~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~g   74 (257)
                      +.|+.|.|+. ..+++.++||-+.    |    ..|++.+.....   ...-.-.|+|+...++...++.|||+|.+. -
T Consensus       197 GtFGQVvk~~d~~T~e~VAIKIiKN~k~f~~Q~~~Ei~iL~~ln~---~d~~~~~n~Vrm~d~F~fr~HlciVfELL~-~  272 (586)
T KOG0667|consen  197 GSFGQVVKAYDHKTGEIVAIKIIKNKKRFLRQAQIEIRILELLNK---HDPDDKYNIVRMLDYFYFRNHLCIVFELLS-T  272 (586)
T ss_pred             cccceeEEEEecCCCcEEEEEeeccChHHHHHHHHHHHHHHHHhc---cCCCCCeeEEEeeeccccccceeeeehhhh-h
Confidence            3577788887 5557788887543    3    344555552221   114456789999999999999999999995 5


Q ss_pred             CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCC--CceEEeeecccccCCCCccccc
Q 044568           75 SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF--WTAKILDFGLAKLPNEDFVIDK  152 (257)
Q Consensus        75 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~--~~~kl~dfg~~~~~~~~~~~~~  152 (257)
                      ||+++|....-.+++....+.++.||+.||.+||+.   +|||+||||+|||+.+.  ..+||+|||.+...........
T Consensus       273 NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~l---~IIHcDLKPENILL~~~~r~~vKVIDFGSSc~~~q~vytYi  349 (586)
T KOG0667|consen  273 NLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHEL---GIIHCDLKPENILLKDPKRSRIKVIDFGSSCFESQRVYTYI  349 (586)
T ss_pred             hHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCChhheeeccCCcCceeEEecccccccCCcceeee
Confidence            999999987788899999999999999999999999   99999999999999753  4799999999987777767778


Q ss_pred             CCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcC
Q 044568          153 RDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEID  194 (257)
Q Consensus       153 ~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~  194 (257)
                      .+..|+|||++.+.+|+.+.|+|||||++.||.+|.+.|.++
T Consensus       350 QSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PLfpG~  391 (586)
T KOG0667|consen  350 QSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEPLFPGD  391 (586)
T ss_pred             eccccccchhhccCCCCCccceeehhhhHHhHhcCccccCCC
Confidence            888999999999999999999999999999999999888876

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.97  E-value=3.5e-31  Score=219.12  Aligned_cols=235  Identities=19%  Similarity=0.162  Sum_probs=176.1

Q ss_pred             ccccceeeeccc-CCCCCeeeccchh--hhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHHH
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSWT--ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDII   80 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l   80 (257)
                      +.++.+|+++.. ++...++|.....  ...+.......-..+.++.|+|++++.+.+......++||||+++++|.+++
T Consensus        11 g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~   90 (256)
T cd08530          11 GSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVMEYAPFGDLSKAI   90 (256)
T ss_pred             CCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEehhcCCCCHHHHH
Confidence            356889998755 4455666654421  1111111111111334788999999999999999999999999999999998


Q ss_pred             hcc--CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC-cccccCCCCc
Q 044568           81 FCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED-FVIDKRDKGY  157 (257)
Q Consensus        81 ~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~-~~~~~~~~~~  157 (257)
                      .+.  ....+++..+..++.|++.|+.|||+.   +++|+|++|.||+++.++.++|+|||.+...... .....++..|
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~---~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~  167 (256)
T cd08530          91 SKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQ---KILHRDLKSANILLVANDLVKIGDLGISKVLKKNMAKTQIGTPHY  167 (256)
T ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCcceEEEecCCcEEEeeccchhhhccCCcccccCCccc
Confidence            642  235689999999999999999999999   9999999999999999999999999988754332 2334567789


Q ss_pred             cCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHH
Q 044568          158 MAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVG  237 (257)
Q Consensus       158 ~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  237 (257)
                      ++||.+.+..++.++|+||+|+++||+++|+.||......   ......         ....  ....+......+.+++
T Consensus       168 ~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~---~~~~~~---------~~~~--~~~~~~~~~~~~~~li  233 (256)
T cd08530         168 MAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEARSMQ---DLRYKV---------QRGK--YPPIPPIYSQDLQNFI  233 (256)
T ss_pred             cCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH---HHHHHH---------hcCC--CCCCchhhCHHHHHHH
Confidence            9999998888899999999999999999999999754211   000000         0000  1122335567799999


Q ss_pred             HHcccCCCCCCC-hHHHHH
Q 044568          238 LWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       238 ~~cl~~~p~~RP-~~ei~~  255 (257)
                      .+||+.+|++|| +.|+++
T Consensus       234 ~~~l~~~p~~Rp~~~~~l~  252 (256)
T cd08530         234 RSMLQVKPKLRPNCDKILA  252 (256)
T ss_pred             HHHcCCCcccCCCHHHHhc
Confidence            999999999999 999975

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.97  E-value=3.5e-32  Score=238.83  Aligned_cols=203  Identities=21%  Similarity=0.289  Sum_probs=164.4

Q ss_pred             hhhhHHHHhHhhhccccccccCCceeeeceeeeecCc--eeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHH
Q 044568           27 WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSV--SGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGI  104 (257)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~--~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l  104 (257)
                      |.+|+.++.         .+.|+||+++...+.....  ..+|+|+|..|+|.++..  ..+.++....+.|++||+.||
T Consensus        88 ~~~Ev~lLK---------sL~H~NIirfy~SW~d~~n~~in~iTEL~TSGtLr~Y~k--k~~~vn~kaik~W~RQILkGL  156 (632)
T KOG0584|consen   88 LYSEVHLLK---------SLKHPNIIRFYDSWVDTDNKTINFITELFTSGTLREYRK--KHRRVNIKAIKSWCRQILKGL  156 (632)
T ss_pred             HHHHHHHHc---------cCCCCceeeeeeheecCCCceeeeeeecccCCcHHHHHH--HhccCCHHHHHHHHHHHHHHh
Confidence            455565665         8999999999999987765  678999999999999998  456677789999999999999


Q ss_pred             HHHhhCCCCCeeeccCCCCceeeCC-CCceEEeeecccccCCCCc-ccccCCCCccCcccccCCCCCccccchhHHHHHH
Q 044568          105 LYLHDECEPPILHCDIKPQNILMDE-FWTAKILDFGLAKLPNEDF-VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLL  182 (257)
Q Consensus       105 ~~lh~~~~~~i~h~dl~~~nil~~~-~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~  182 (257)
                      .|||++ +|+|+|||||.+||++.+ .|.+||+|+|++....... ....|||.|||||+.. ..|+...||||||++++
T Consensus       157 ~yLHs~-~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r~s~aksvIGTPEFMAPEmYE-E~YnE~VDVYaFGMCmL  234 (632)
T KOG0584|consen  157 VYLHSQ-DPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLRKSHAKSVIGTPEFMAPEMYE-ENYNELVDVYAFGMCML  234 (632)
T ss_pred             hhhhcC-CCCccccccccceEEEcCCcCceeecchhHHHHhhccccceeccCccccChHHHh-hhcchhhhhhhhhHHHH
Confidence            999999 999999999999999975 5899999999998655443 4569999999999987 67999999999999999


Q ss_pred             HHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          183 ETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       183 el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ||+|+..||.-...+.       ..|+..     ...++|..+.+-..+++.++|.+|+.. ..+|| +.|+++
T Consensus       235 EMvT~eYPYsEC~n~A-------QIYKKV-----~SGiKP~sl~kV~dPevr~fIekCl~~-~~~R~sa~eLL~  295 (632)
T KOG0584|consen  235 EMVTSEYPYSECTNPA-------QIYKKV-----TSGIKPAALSKVKDPEVREFIEKCLAT-KSERLSAKELLK  295 (632)
T ss_pred             HHHhccCChhhhCCHH-------HHHHHH-----HcCCCHHHhhccCCHHHHHHHHHHhcC-chhccCHHHHhh
Confidence            9999999997442111       112211     122222233333457788999999999 99999 999986

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.97  E-value=9.9e-32  Score=231.96  Aligned_cols=232  Identities=18%  Similarity=0.225  Sum_probs=167.0

Q ss_pred             ccccceeeeccc-CCCCCeeeccch----------hhhHHHHhHhhhccccccccCCceeeeceeeeec-----CceeEE
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT-----SVSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~-----~~~~lV   67 (257)
                      +.++.||++... ++..+++|....          .+|++.+.         +++|+|++++.+.+...     ...++|
T Consensus        16 G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~---------~l~h~niv~~~~~~~~~~~~~~~~~~lv   86 (336)
T cd07849          16 GAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILR---------RFKHENIIGILDIIRPPSFESFNDVYIV   86 (336)
T ss_pred             cCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHH---------hCCCCCcCchhheeecccccccceEEEE
Confidence            467899999854 456677776531          22333333         78899999999876644     357899


Q ss_pred             EeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC
Q 044568           68 ERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED  147 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~  147 (257)
                      +||++ ++|.+.+.   ...+++..+..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||++......
T Consensus        87 ~e~~~-~~l~~~~~---~~~l~~~~~~~i~~ql~~aL~~LH~~---~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~  159 (336)
T cd07849          87 QELME-TDLYKLIK---TQHLSNDHIQYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTNCDLKICDFGLARIADPE  159 (336)
T ss_pred             ehhcc-cCHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEECCCCCEEECcccceeecccc
Confidence            99996 58888884   45799999999999999999999999   9999999999999999999999999988653321


Q ss_pred             c------ccccCCCCccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhh---hhhh
Q 044568          148 F------VIDKRDKGYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFIN---RELN  217 (257)
Q Consensus       148 ~------~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~---~~~~  217 (257)
                      .      ....++..|+|||.+.+ ..++.++|+||+|+++|+|++|+.||.......   ....+. .....   ....
T Consensus       160 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~f~~~~~~~---~~~~~~-~~~~~~~~~~~~  235 (336)
T cd07849         160 HDHTGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGKDYLH---QLNLIL-GVLGTPSQEDLN  235 (336)
T ss_pred             ccccCCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH---HHHHHH-HHcCCCCHHHHH
Confidence            1      22356778999998754 457899999999999999999999996542111   000000 00000   0000


Q ss_pred             --------hhhc----CCCCC-----HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          218 --------KLVR----GTKVD-----KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       218 --------~~~~----~~~~~-----~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                              ....    ....+     ......+.+++.+||+.+|++|| +.|+++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~e~l~  291 (336)
T cd07849         236 CIISLRARNYIKSLPFKPKVPWNKLFPNADPKALDLLDKMLTFNPHKRITVEEALA  291 (336)
T ss_pred             HhhchhhhhHHhhcCcCCcccHHHHhcccCcHHHHHHHHHcCCChhhCcCHHHHhc
Confidence                    0000    00000     12246788999999999999999 999875

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.97  E-value=1.3e-31  Score=231.07  Aligned_cols=234  Identities=15%  Similarity=0.151  Sum_probs=169.2

Q ss_pred             ccccceeeecccC-CCCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeee----cCceeEE
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL----TSVSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~----~~~~~lV   67 (257)
                      +.++.||++.... +..+++|....           .+|++.         +.++.|+|++++.+.+..    ....++|
T Consensus        16 g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~---------l~~l~h~~iv~~~~~~~~~~~~~~~~~lv   86 (334)
T cd07855          16 GAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKI---------LRHFKHDNIIAIRDILRPPGADFKDVYVV   86 (334)
T ss_pred             CCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHH---------HHhcCCCCccCHHHhccccCCCCceEEEE
Confidence            4578899998654 55666665432           123333         337889999999887653    3467899


Q ss_pred             EeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC
Q 044568           68 ERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED  147 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~  147 (257)
                      |||+. |+|.+++.  ....+++..+..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||++......
T Consensus        87 ~e~~~-~~l~~~~~--~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~  160 (334)
T cd07855          87 MDLME-SDLHHIIH--SDQPLTEEHIRYFLYQLLRGLKYIHSA---NVIHRDLKPSNLLVNEDCELRIGDFGMARGLSSS  160 (334)
T ss_pred             Eehhh-hhHHHHhc--cCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCcEEecccccceeeccc
Confidence            99996 69999987  445699999999999999999999999   9999999999999999999999999988643221


Q ss_pred             c-------ccccCCCCccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhh--------
Q 044568          148 F-------VIDKRDKGYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCF--------  211 (257)
Q Consensus       148 ~-------~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~--------  211 (257)
                      .       ....++..|+|||.+.+ ..++.++|+||||+++|||++|+.||........   +........        
T Consensus       161 ~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~~~~~~---~~~~~~~~g~~~~~~~~  237 (334)
T cd07855         161 PTEHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYVHQ---LKLILSVLGSPSEEVLN  237 (334)
T ss_pred             CcCCCcccccccccccccChHHhcCCcccccccchHHHHHHHHHHHcCCCccCCCChHHH---HHHHHHHhCCChhHhhh
Confidence            1       23356778999999865 4578999999999999999999999975422111   110000000        


Q ss_pred             --hhhhhhhhh---cCC-CC-----CHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          212 --INRELNKLV---RGT-KV-----DKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       212 --~~~~~~~~~---~~~-~~-----~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                        .........   ... ..     .......+.+++.+||+.+|.+|| ++++++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~  293 (334)
T cd07855         238 RIGSDRVRKYIQNLPRKQPVPWSKIFPKASPEALDLLSQMLQFDPEERITVEQALQ  293 (334)
T ss_pred             hhchhhHHHHHhhcccCCCCCHHHHcccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence              000011111   100 11     122457899999999999999999 999875

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.97  E-value=5.7e-31  Score=222.41  Aligned_cols=220  Identities=16%  Similarity=0.149  Sum_probs=167.7

Q ss_pred             ccccceeeecc----cCCCCCeeeccch-------------hhhHHHHhHhhhccccccc-cCCceeeeceeeeecCcee
Q 044568            4 TKLSNFYRSSF----NARNSPWISRVSW-------------TADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVSG   65 (257)
Q Consensus         4 ~~~~~~y~~~~----~~~~~~~i~~~~~-------------~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~~   65 (257)
                      +.++.||+++.    .++..+++|....             .+|++.+.         ++ .|+|++.+...+......+
T Consensus        11 G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~---------~l~~~~~i~~~~~~~~~~~~~~   81 (290)
T cd05613          11 GAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLE---------HIRQSPFLVTLHYAFQTDTKLH   81 (290)
T ss_pred             CCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHH---------hcccCCChhceeeEeecCCeEE
Confidence            45788998875    3566677775432             22333333         55 4899999999999889999


Q ss_pred             EEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC
Q 044568           66 KIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN  145 (257)
Q Consensus        66 lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~  145 (257)
                      +||||+++++|.+++.  ....+++.++..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||++....
T Consensus        82 lv~e~~~~~~L~~~l~--~~~~l~~~~~~~~~~qi~~al~~lH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~  156 (290)
T cd05613          82 LILDYINGGELFTHLS--QRERFKEQEVQIYSGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGLSKEFH  156 (290)
T ss_pred             EEEecCCCCcHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeEECCCCCEEEeeCccceecc
Confidence            9999999999999997  445688899999999999999999999   99999999999999999999999999887543


Q ss_pred             CCc----ccccCCCCccCcccccCC--CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhh
Q 044568          146 EDF----VIDKRDKGYMAPECYKRT--PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKL  219 (257)
Q Consensus       146 ~~~----~~~~~~~~~~aPE~~~~~--~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (257)
                      ...    ....++..|++||.+...  .++.++|+||||+++|++++|..||..........   .+..         ..
T Consensus       157 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~~~---~~~~---------~~  224 (290)
T cd05613         157 EDEVERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVDGEKNSQA---EISR---------RI  224 (290)
T ss_pred             cccccccccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCCCCCcCCccccHH---HHHH---------Hh
Confidence            221    234567789999998753  46789999999999999999999997542211111   1100         11


Q ss_pred             hc-CCCCCHHHHHHHHHHHHHcccCCCCCCC
Q 044568          220 VR-GTKVDKKNLENLVKVGLWCVQDEPALRP  249 (257)
Q Consensus       220 ~~-~~~~~~~~~~~l~~l~~~cl~~~p~~RP  249 (257)
                      .. ....+......+.+++.+||+.||.+||
T Consensus       225 ~~~~~~~~~~~~~~~~~ll~~~l~~~p~~R~  255 (290)
T cd05613         225 LKSEPPYPQEMSALAKDIIQRLLMKDPKKRL  255 (290)
T ss_pred             hccCCCCCccCCHHHHHHHHHHhcCCHHHhc
Confidence            11 1123444567889999999999999995

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.97  E-value=1.8e-31  Score=245.84  Aligned_cols=235  Identities=18%  Similarity=0.211  Sum_probs=175.2

Q ss_pred             ccccceeeecccC--------CCCCeeeccc---hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSFNA--------RNSPWISRVS---WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~~--------~~~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +-|+.|++|.+..        .-.+++|...   ...+.+.+...+.- .+.-..|+|++++.+.+...+..++|+||+.
T Consensus       307 g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~-m~~~g~H~niv~llG~~t~~~~~~~v~Ey~~  385 (609)
T KOG0200|consen  307 GAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNV-LKELGKHPNIVNLLGACTQDGPLYVIVEYAE  385 (609)
T ss_pred             ccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHH-HHHhcCCcchhhheeeeccCCceEEEEEecc
Confidence            4567788877442        2334555432   12223322222221 2335569999999999999999999999999


Q ss_pred             CCCHHHHHhccC------C--------CCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeee
Q 044568           73 NGSLTDIIFCSA------E--------RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDF  138 (257)
Q Consensus        73 ~gsL~~~l~~~~------~--------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~df  138 (257)
                      +|+|.++++...      .        ..++..+.+.++.||+.|++||+++   +++|||+.++|||+..+..+|++||
T Consensus       386 ~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~---~~vHRDLAaRNVLi~~~~~~kIaDF  462 (609)
T KOG0200|consen  386 HGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASV---PCVHRDLAARNVLITKNKVIKIADF  462 (609)
T ss_pred             CCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhC---CccchhhhhhhEEecCCCEEEEccc
Confidence            999999998532      0        2388899999999999999999999   9999999999999999999999999


Q ss_pred             cccccCCCCccc----ccC--CCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhh
Q 044568          139 GLAKLPNEDFVI----DKR--DKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCF  211 (257)
Q Consensus       139 g~~~~~~~~~~~----~~~--~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~  211 (257)
                      |+++........    ..+  ...|+|||.+....|+.+|||||||+++||+++ |..||.+-. ...+.  ..+     
T Consensus       463 Glar~~~~~~~y~~~~~~~~LP~kWmApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~~-~~~~l--~~~-----  534 (609)
T KOG0200|consen  463 GLARDHYNKDYYRTKSSAGTLPVKWMAPESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPGIP-PTEEL--LEF-----  534 (609)
T ss_pred             cceeccCCCCceEecCCCCccceeecCHHHhccCcccccchhhHHHHHHHHHhhCCCCCCCCCC-cHHHH--HHH-----
Confidence            999853332211    111  223999999999999999999999999999999 889987521 11111  111     


Q ss_pred             hhhhhhhhhcCC--CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          212 INRELNKLVRGT--KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       212 ~~~~~~~~~~~~--~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                             +-++.  ..|..+..++..+++.||+.+|++|| +.|+.+.|
T Consensus       535 -------l~~G~r~~~P~~c~~eiY~iM~~CW~~~p~~RP~F~~~~~~~  576 (609)
T KOG0200|consen  535 -------LKEGNRMEQPEHCSDEIYDLMKSCWNADPEDRPTFSECVEFF  576 (609)
T ss_pred             -------HhcCCCCCCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHHH
Confidence                   11111  44667788999999999999999999 99998754

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.97  E-value=4.5e-31  Score=227.91  Aligned_cols=236  Identities=15%  Similarity=0.119  Sum_probs=168.2

Q ss_pred             ccccceeeecccC-CCCCeeeccc-----------hhhhHHHHhHhhhccccccc-cCCceeeeceeeeec--CceeEEE
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS-----------WTADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLT--SVSGKIE   68 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~--~~~~lV~   68 (257)
                      +.++.||+|.... +..+++|+..           +.+|++.+.         ++ .|+|++++.+.+...  ...++||
T Consensus        18 g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~---------~l~~h~ni~~~~~~~~~~~~~~~~lv~   88 (337)
T cd07852          18 GAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQ---------ELGDHPNIVKLLNVIKAENDKDIYLVF   88 (337)
T ss_pred             CCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHH---------HhcCCCCccceeeeeccCCCceEEEEe
Confidence            4578999998764 4556666542           122333333         77 899999999987654  3679999


Q ss_pred             eecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc
Q 044568           69 RPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF  148 (257)
Q Consensus        69 E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~  148 (257)
                      ||++ ++|.+++..   ..+++..+..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||.+.......
T Consensus        89 e~~~-~~L~~~~~~---~~~~~~~~~~i~~qi~~~L~~LH~~---~i~H~dl~p~nill~~~~~~kl~d~g~~~~~~~~~  161 (337)
T cd07852          89 EYME-TDLHAVIRA---NILEDVHKRYIMYQLLKALKYIHSG---NVIHRDLKPSNILLNSDCRVKLADFGLARSLSELE  161 (337)
T ss_pred             cccc-cCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCcEEEeeccchhcccccc
Confidence            9997 599999863   2788999999999999999999999   99999999999999999999999999887432211


Q ss_pred             --------ccccCCCCccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHH-------Hhhh
Q 044568          149 --------VIDKRDKGYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVY-------KCFI  212 (257)
Q Consensus       149 --------~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~-------~~~~  212 (257)
                              ....++..|+|||.+.+ ..++.++|+||||+++|+|++|+.||.................       ....
T Consensus       162 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (337)
T cd07852         162 ENPENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTSTLNQLEKIIEVIGPPSAEDIESIK  241 (337)
T ss_pred             ccccCcchhcccccccccCceeeeccccccccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHHH
Confidence                    22346778999998765 4578899999999999999999999975422211100000000       0000


Q ss_pred             hhhhhhhhc----CC-----CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          213 NRELNKLVR----GT-----KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       213 ~~~~~~~~~----~~-----~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ......+++    ..     ......+..+.+++.+||+.||.+|| +.++++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rps~~~il~  294 (337)
T cd07852         242 SPFAATMLDSLPSRPRKPLDELLPKASDDALDLLKKLLVFNPNKRLTAEEALE  294 (337)
T ss_pred             hhhHHHhhhhcccccccchhhhccCCCHHHHHHHHHhccCCcccccCHHHHhh
Confidence            000001110    00     11112457789999999999999999 999975

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.97  E-value=3.5e-31  Score=225.38  Aligned_cols=238  Identities=18%  Similarity=0.144  Sum_probs=167.9

Q ss_pred             ccccceeeecccC-CCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecC--------c
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTS--------V   63 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~--------~   63 (257)
                      +.++.||+++... +..+++|...           +.+|++.+.         +++|+|++++.+.+....        .
T Consensus        19 g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~---------~l~h~~i~~~~~~~~~~~~~~~~~~~~   89 (311)
T cd07866          19 GTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILK---------KLKHPNVVPLIDMAVERPDKSKRKRGS   89 (311)
T ss_pred             CCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHH---------hcCCCCccchhhheecccccccccCce
Confidence            4678999999664 4556666542           234555555         888999999988765433        4


Q ss_pred             eeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeeccccc
Q 044568           64 SGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKL  143 (257)
Q Consensus        64 ~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~  143 (257)
                      .++||||+.+ +|.+.+.. ....+++.++..++.|+++||.|||++   +++|+|++|+||+++.++.++|+|||++..
T Consensus        90 ~~lv~~~~~~-~l~~~~~~-~~~~~~~~~~~~i~~~l~~al~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~  164 (311)
T cd07866          90 VYMVTPYMDH-DLSGLLEN-PSVKLTESQIKCYMLQLLEGINYLHEN---HILHRDIKAANILIDNQGILKIADFGLARP  164 (311)
T ss_pred             EEEEEecCCc-CHHHHHhc-cccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEECcCccchh
Confidence            6999999974 78887764 456799999999999999999999999   999999999999999999999999998875


Q ss_pred             CCCCc--------------ccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHH-
Q 044568          144 PNEDF--------------VIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWV-  207 (257)
Q Consensus       144 ~~~~~--------------~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~-  207 (257)
                      .....              ....+++.|+|||.+.+. .++.++|+||||+++|||++|+.||................ 
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~~~~~~~~~~~~~~~~~~~~  244 (311)
T cd07866         165 YDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKSDIDQLHLIFKLCG  244 (311)
T ss_pred             ccCCCcccccCCcccccccccceeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhC
Confidence            33221              112346679999988654 47899999999999999999999997553222111111000 


Q ss_pred             ------HHhhhh-hhhhh-hhcCC-C-----CCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          208 ------YKCFIN-RELNK-LVRGT-K-----VDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       208 ------~~~~~~-~~~~~-~~~~~-~-----~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                            .+.+.. ..... ..... .     ......+.+.+++.+||+.||++|| +.|++.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~ell~  307 (311)
T cd07866         245 TPTEETWPGWRSLPGCEGVHSFTNYPRTLEERFGKLGPEGLDLLSKLLSLDPYKRLTASDALE  307 (311)
T ss_pred             CCChhhchhhhhcccccccccCCCCCccHHHHcccCChhHHHHHHHHcccCcccCcCHHHHhc
Confidence                  000000 00000 00000 0     0011226788999999999999999 999875

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.97  E-value=3.6e-31  Score=228.61  Aligned_cols=237  Identities=16%  Similarity=0.171  Sum_probs=169.9

Q ss_pred             ccccceeeecccC-CCCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeec-----CceeE
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT-----SVSGK   66 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~-----~~~~l   66 (257)
                      +.++.||+++... +..+++|...-           .+|++.         +.++.|+|++++.+.+...     ...++
T Consensus        16 G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~---------l~~l~h~ni~~~~~~~~~~~~~~~~~~~l   86 (337)
T cd07858          16 GAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKL---------LRHLDHENVIAIKDIMPPPHREAFNDVYI   86 (337)
T ss_pred             CCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHH---------HHhcCCCCccchHHheecccccccCcEEE
Confidence            4578899998654 55666775431           223333         3378899999998877643     35799


Q ss_pred             EEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC
Q 044568           67 IERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE  146 (257)
Q Consensus        67 V~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~  146 (257)
                      |+||+. ++|.+++.  ....+++..+..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||++.....
T Consensus        87 v~e~~~-~~L~~~~~--~~~~l~~~~~~~i~~qi~~aL~~LH~~---~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~  160 (337)
T cd07858          87 VYELMD-TDLHQIIR--SSQTLSDDHCQYFLYQLLRGLKYIHSA---NVLHRDLKPSNLLLNANCDLKICDFGLARTTSE  160 (337)
T ss_pred             EEeCCC-CCHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCEEECcCccccccCC
Confidence            999996 69999987  456799999999999999999999999   999999999999999999999999999875433


Q ss_pred             C---cccccCCCCccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHH-------Hhhhhhh
Q 044568          147 D---FVIDKRDKGYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVY-------KCFINRE  215 (257)
Q Consensus       147 ~---~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~-------~~~~~~~  215 (257)
                      .   .....++..|+|||.+.. ..++.++|+||||+++|+|++|+.||.................       .......
T Consensus       161 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (337)
T cd07858         161 KGDFMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGKDYVHQLKLITELLGSPSEEDLGFIRNEK  240 (337)
T ss_pred             CcccccccccccCccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCChHHhhhcCchh
Confidence            2   123356778999998865 4588999999999999999999999975422111100100000       0000000


Q ss_pred             hhhhh---cCC------CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          216 LNKLV---RGT------KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       216 ~~~~~---~~~------~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .....   ...      .........+.+++.+||+.+|++|| ++|+++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rps~~ell~  290 (337)
T cd07858         241 ARRYIRSLPYTPRQSFARLFPHANPLAIDLLEKMLVFDPSKRITVEEALA  290 (337)
T ss_pred             hhHHHHhcCcccccCHHHHcccCCHHHHHHHHHHhcCChhhccCHHHHHc
Confidence            00000   000      01123457789999999999999999 999875

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.97  E-value=2.1e-31  Score=229.16  Aligned_cols=237  Identities=16%  Similarity=0.179  Sum_probs=174.2

Q ss_pred             ccccceeeecccC-CCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecC-----ceeE
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTS-----VSGK   66 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~-----~~~l   66 (257)
                      +.++.||+++... ++.+++|...           +.++++.+.         .+.|+|++++.+.+...+     ..++
T Consensus        11 g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~---------~l~~~~i~~~~~~~~~~~~~~~~~~~l   81 (330)
T cd07834          11 GAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLR---------HLRHENIIGLLDILRPPSPEDFNDVYI   81 (330)
T ss_pred             CCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHH---------hcCCcchhhhhhhhcccCcccccceEE
Confidence            5788999999765 5666676433           223333333         778999999999888765     7899


Q ss_pred             EEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC
Q 044568           67 IERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE  146 (257)
Q Consensus        67 V~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~  146 (257)
                      ||||++ ++|.+++.  ....+++..+..++.|++.||.|||++   +++|+||+|.||+++.++.++|+|||.+.....
T Consensus        82 v~e~~~-~~l~~~l~--~~~~l~~~~~~~i~~~l~~~l~~LH~~---gi~H~dlkp~nili~~~~~~~L~dfg~~~~~~~  155 (330)
T cd07834          82 VTELME-TDLHKVIK--SPQPLTDDHIQYFLYQILRGLKYLHSA---NVIHRDLKPSNILVNSNCDLKICDFGLARGVDP  155 (330)
T ss_pred             Eecchh-hhHHHHHh--CCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEcccCceEeecc
Confidence            999997 58999987  444899999999999999999999999   999999999999999999999999999875443


Q ss_pred             C------cccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHH-------Hhhh
Q 044568          147 D------FVIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVY-------KCFI  212 (257)
Q Consensus       147 ~------~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~-------~~~~  212 (257)
                      .      .....++..|+|||.+.+. .++.++|+||+|+++|+|++|..||.................       ....
T Consensus       156 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~  235 (330)
T cd07834         156 DEDEKGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDYIDQLNLIVEVLGTPSEEDLKFIT  235 (330)
T ss_pred             cccccccccccccccCcCCceeeecccCCCcchhHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHhcCCCChhHhhhcc
Confidence            2      2234567779999999877 789999999999999999999999976532111000000000       0000


Q ss_pred             hhhhhhhhc---CC------CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          213 NRELNKLVR---GT------KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       213 ~~~~~~~~~---~~------~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .......+.   ..      ......+..+.+++.+||+.+|.+|| ++++++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~  288 (330)
T cd07834         236 SEKARNYLKSLPKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKRITADEALA  288 (330)
T ss_pred             ccchhhHHhhcccCCcchhHHhcccCCHHHHHHHHHHccCChhhCCCHHHHHh
Confidence            000000000   00      01122356789999999999999999 999976

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.97  E-value=1.6e-31  Score=235.29  Aligned_cols=187  Identities=17%  Similarity=0.174  Sum_probs=157.1

Q ss_pred             cCCceeeeceeeeecCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCcee
Q 044568           47 RGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNIL  126 (257)
Q Consensus        47 ~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil  126 (257)
                      .|+|+++..+.+...-+.++|||++.++-+.+.+..  ...+. .++..|+.+++.|+.|||++   |++|||+||+|||
T Consensus       374 ~h~niv~~~~v~~~~~~~~~v~e~l~g~ell~ri~~--~~~~~-~e~~~w~~~lv~Av~~LH~~---gvvhRDLkp~NIL  447 (612)
T KOG0603|consen  374 DHPNIVKSHDVYEDGKEIYLVMELLDGGELLRRIRS--KPEFC-SEASQWAAELVSAVDYLHEQ---GVVHRDLKPGNIL  447 (612)
T ss_pred             CCCcceeecceecCCceeeeeehhccccHHHHHHHh--cchhH-HHHHHHHHHHHHHHHHHHhc---CeeecCCChhhee
Confidence            599999999999999999999999999988888763  23333 77888999999999999999   9999999999999


Q ss_pred             e-CCCCceEEeeecccccCCCCcccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHH
Q 044568          127 M-DEFWTAKILDFGLAKLPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTN  205 (257)
Q Consensus       127 ~-~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~  205 (257)
                      + ++.++++|+|||.++..........-|..|.|||.+....|++++||||||++||+|++|+.||......        
T Consensus       448 ~~~~~g~lrltyFG~a~~~~~~~~tp~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~~--------  519 (612)
T KOG0603|consen  448 LDGSAGHLRLTYFGFWSELERSCDTPALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPAG--------  519 (612)
T ss_pred             ecCCCCcEEEEEechhhhCchhhcccchhhcccChhhhccCCCCcchhhHHHHHHHHHHHhCCCccccCCch--------
Confidence            9 5889999999999987666555566778899999999989999999999999999999999999866322        


Q ss_pred             HHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          206 WVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                              .++...+....++........+|+.+||+.||.+|| +.++..
T Consensus       520 --------~ei~~~i~~~~~s~~vS~~AKdLl~~LL~~dP~~Rl~~~~i~~  562 (612)
T KOG0603|consen  520 --------IEIHTRIQMPKFSECVSDEAKDLLQQLLQVDPALRLGADEIGA  562 (612)
T ss_pred             --------HHHHHhhcCCccccccCHHHHHHHHHhccCChhhCcChhhhcc
Confidence                    122333333344455567788899999999999999 999853

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.97  E-value=9.1e-31  Score=226.68  Aligned_cols=236  Identities=14%  Similarity=0.130  Sum_probs=170.9

Q ss_pred             ccccceeeeccc-CCCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecC------cee
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTS------VSG   65 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~------~~~   65 (257)
                      +.++.||++... ++..+++|...           +.+|++.+.         ++.|+|++++.+.+...+      ..+
T Consensus        26 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~~~~~~~~~~~~~   96 (343)
T cd07880          26 GAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLK---------HMKHENVIGLLDVFTPDLSLDRFHDFY   96 (343)
T ss_pred             cCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHH---------hcCCCCccceeeeecCCccccccceEE
Confidence            567889999744 56667777642           123333333         889999999998876543      358


Q ss_pred             EEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC
Q 044568           66 KIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN  145 (257)
Q Consensus        66 lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~  145 (257)
                      +||||+ +++|.+++.   ...+++..+..++.|++.|+.|||++   +++|+||+|+||+++.++.++++|||++....
T Consensus        97 lv~e~~-~~~l~~~~~---~~~l~~~~~~~i~~qi~~al~~LH~~---gi~H~dlkp~Nill~~~~~~kl~dfg~~~~~~  169 (343)
T cd07880          97 LVMPFM-GTDLGKLMK---HEKLSEDRIQFLVYQMLKGLKYIHAA---GIIHRDLKPGNLAVNEDCELKILDFGLARQTD  169 (343)
T ss_pred             EEEecC-CCCHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeecccccccc
Confidence            999999 679999885   35689999999999999999999999   99999999999999999999999999988655


Q ss_pred             CCcccccCCCCccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHH-------HHhhhhhhhh
Q 044568          146 EDFVIDKRDKGYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWV-------YKCFINRELN  217 (257)
Q Consensus       146 ~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~-------~~~~~~~~~~  217 (257)
                      .......++..|++||.+.+ ..++.++|+||+|+++|++++|..||................       ..........
T Consensus       170 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (343)
T cd07880         170 SEMTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHDHLDQLMEIMKVTGTPSKEFVQKLQSEDAK  249 (343)
T ss_pred             cCccccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhhcchhHH
Confidence            54445567788999999876 357899999999999999999999997542211111100000       0000000000


Q ss_pred             hhhc----CC-----CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          218 KLVR----GT-----KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       218 ~~~~----~~-----~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ....    ..     .........+.+++.+|++.||++|| +.++++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~t~~~~l~  297 (343)
T cd07880         250 NYVKKLPRFRKKDFRSLLPNANPLAVNVLEKMLVLDAESRITAAEALA  297 (343)
T ss_pred             HHHHhccccCcchHHHhccCCChHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            0000    00     01122345688999999999999999 999874

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.97  E-value=6e-31  Score=220.83  Aligned_cols=238  Identities=18%  Similarity=0.153  Sum_probs=173.3

Q ss_pred             ccccceeeecccC-CCCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      +.++.||+++... ++.+++|....           .++++.+.         ++.|+|++++.+.+...+..++||||+
T Consensus        10 g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~---------~~~~~~i~~~~~~~~~~~~~~~v~e~~   80 (282)
T cd07829          10 GTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLK---------ELKHPNIVKLLDVIHTERKLYLVFEYC   80 (282)
T ss_pred             cCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHH---------hcCCCCHHHHHhhhhcCCceEEEecCc
Confidence            4678899999876 55666664442           22333333         777999999999999999999999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc---
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF---  148 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~---  148 (257)
                      + ++|.+++.. ....+++..+..++.|++.||.|||++   +++|+|++|+||++++++.++|+|||.+.......   
T Consensus        81 ~-~~l~~~i~~-~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~~  155 (282)
T cd07829          81 D-MDLKKYLDK-RPGPLSPNLIKSIMYQLLRGLAYCHSH---RILHRDLKPQNILINRDGVLKLADFGLARAFGIPLRTY  155 (282)
T ss_pred             C-cCHHHHHHh-hccCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChheEEEcCCCCEEEecCCcccccCCCcccc
Confidence            7 599999975 335799999999999999999999999   99999999999999999999999999887543322   


Q ss_pred             ccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHH-------HHhhhhh-hhhhh
Q 044568          149 VIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWV-------YKCFINR-ELNKL  219 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~  219 (257)
                      .....+..|+|||.+... .++.++|+||||+++||+++|..||................       +.....- .....
T Consensus       156 ~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (282)
T cd07829         156 THEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDSEIDQLFKIFQILGTPTEESWPGVTKLPDYKPT  235 (282)
T ss_pred             CccccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCCcHHHHHhhccccccccc
Confidence            223445679999998766 68899999999999999999999997653211100000000       0000000 00000


Q ss_pred             hcCC------CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          220 VRGT------KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       220 ~~~~------~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .+..      .........+.+++.+||+.+|++|| +.+++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~  278 (282)
T cd07829         236 FPKFPPKDLEKVLPRLDPEGIDLLSKMLQYNPAKRISAKEALK  278 (282)
T ss_pred             ccccCccchHHhcccccHHHHHHHHHhhccCcccCCCHHHHhh
Confidence            0000      00011246799999999999999999 999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.97  E-value=9.6e-31  Score=226.43  Aligned_cols=232  Identities=16%  Similarity=0.157  Sum_probs=167.8

Q ss_pred             ccccceeeeccc-CCCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecC------cee
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTS------VSG   65 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~------~~~   65 (257)
                      +.++.||++... ++..+++|...           +.++++++.         ++.|+|++++.+.+....      ..+
T Consensus        26 g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~---------~l~h~niv~~~~~~~~~~~~~~~~~~~   96 (342)
T cd07879          26 GAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLK---------HMQHENVIGLLDVFTSAVSGDEFQDFY   96 (342)
T ss_pred             cCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHH---------hcCCCCccchhheecccccCCCCceEE
Confidence            467889999854 56667777543           123344443         788999999998876543      468


Q ss_pred             EEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC
Q 044568           66 KIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN  145 (257)
Q Consensus        66 lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~  145 (257)
                      +|+||+. .+|.+++.    ..+++..+..++.|++.||.|||++   +++||||+|+||+++.++.++|+|||+++...
T Consensus        97 lv~e~~~-~~l~~~~~----~~~~~~~~~~~~~qi~~aL~~LH~~---~i~H~dlkp~NIll~~~~~~kL~dfg~~~~~~  168 (342)
T cd07879          97 LVMPYMQ-TDLQKIMG----HPLSEDKVQYLVYQMLCGLKYIHSA---GIIHRDLKPGNLAVNEDCELKILDFGLARHAD  168 (342)
T ss_pred             EEecccc-cCHHHHHc----CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEeeCCCCcCCC
Confidence            9999996 47777652    3589999999999999999999999   99999999999999999999999999987654


Q ss_pred             CCcccccCCCCccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHH----------hhhhh
Q 044568          146 EDFVIDKRDKGYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYK----------CFINR  214 (257)
Q Consensus       146 ~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~----------~~~~~  214 (257)
                      .......++..|+|||.+.+ ..++.++|+||||+++|||++|+.||........   .......          .....
T Consensus       169 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~pf~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  245 (342)
T cd07879         169 AEMTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQ---LTQILKVTGVPGPEFVQKLEDK  245 (342)
T ss_pred             CCCCCceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhCCCCCCCCCHHHH---HHHHHHhcCCCCHHHHHHhccc
Confidence            44444566778999999876 4578999999999999999999999975421111   1100000          00000


Q ss_pred             hhhhhhcC-CCC--------CHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          215 ELNKLVRG-TKV--------DKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       215 ~~~~~~~~-~~~--------~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ........ ...        .......+.+++.+||+.||++|| ++|++.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~e~l~  296 (342)
T cd07879         246 AAKSYIKSLPKYPRKDFSTLFPKASPQAVDLLEKMLELDVDKRLTATEALE  296 (342)
T ss_pred             chHHHHhhcCCcccchHHHHhcCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence            00000000 000        011345688999999999999999 999974

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.97  E-value=2e-31  Score=236.83  Aligned_cols=187  Identities=16%  Similarity=0.201  Sum_probs=154.5

Q ss_pred             ccccceeeec-ccCCCCCeeeccch-----hhhHHHHhHhhhccccccccCCceeeeceeeeec------CceeEEEeec
Q 044568            4 TKLSNFYRSS-FNARNSPWISRVSW-----TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT------SVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~-~~~~~~~~i~~~~~-----~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~------~~~~lV~E~~   71 (257)
                      +.++.||+|. -..|+.+|||..+-     +.+.....+....    ++.|+|||+..++-...      +...+|||||
T Consensus        24 Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~Eieilk----KLnh~NIVk~f~iee~~~~~~~~~~~vlvmEyC   99 (732)
T KOG4250|consen   24 GAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILK----KLNHPNIVKLFDIEETKFLGLVTRLPVLVMEYC   99 (732)
T ss_pred             CccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHH----HcCchhhhhhcccCCccccCcccccceEEEeec
Confidence            4689999999 77888889987663     2333333333333    88899999998877653      4778999999


Q ss_pred             CCCCHHHHHhcc-CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCC--CC--ceEEeeecccccCCC
Q 044568           72 RNGSLTDIIFCS-AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE--FW--TAKILDFGLAKLPNE  146 (257)
Q Consensus        72 ~~gsL~~~l~~~-~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~--~~--~~kl~dfg~~~~~~~  146 (257)
                      .+|||...+.+. +..+|++.+.+.++.+++.||.|||++   +|+||||||.||++..  ++  ..||+|||.++..+.
T Consensus       100 ~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrEn---~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Arel~d  176 (732)
T KOG4250|consen  100 SGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLREN---GIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAARELDD  176 (732)
T ss_pred             CCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHHc---CceeccCCCCcEEEeecCCCceEEeeecccccccCCC
Confidence            999999999865 456899999999999999999999999   9999999999998843  23  369999999997654


Q ss_pred             Cc--ccccCCCCccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCC
Q 044568          147 DF--VIDKRDKGYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASK  197 (257)
Q Consensus       147 ~~--~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~  197 (257)
                      ..  .+..||..|++||.+.. ..|+...|.|||||++|+++||..||-....+
T Consensus       177 ~s~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caTG~lPF~p~~~p  230 (732)
T KOG4250|consen  177 NSLFTSLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYECATGELPFIPFGGP  230 (732)
T ss_pred             CCeeeeecCchhhcChHHHhhccCcCceeehhhhhhHHHHHhccCCCCCcCCCc
Confidence            43  67789999999999984 77899999999999999999999999765444

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=6e-32  Score=221.56  Aligned_cols=183  Identities=21%  Similarity=0.223  Sum_probs=158.9

Q ss_pred             cccCCceeeeceeeeecCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCc
Q 044568           45 RIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQN  124 (257)
Q Consensus        45 ~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~n  124 (257)
                      ..+||.+..+--.++..+..|+||||..||.|.-+|.  ..+.+++...+.+...|++||.|||++   +|++||+|.+|
T Consensus       224 ~~~HPFLt~LKYsFQt~drlCFVMeyanGGeLf~HLs--rer~FsE~RtRFYGaEIvsAL~YLHs~---~ivYRDlKLEN  298 (516)
T KOG0690|consen  224 NCRHPFLTSLKYSFQTQDRLCFVMEYANGGELFFHLS--RERVFSEDRTRFYGAEIVSALGYLHSR---NIVYRDLKLEN  298 (516)
T ss_pred             hccCcHHHHhhhhhccCceEEEEEEEccCceEeeehh--hhhcccchhhhhhhHHHHHHhhhhhhC---Ceeeeechhhh
Confidence            7789999999999999999999999999999999997  578899999999999999999999999   99999999999


Q ss_pred             eeeCCCCceEEeeeccccc---CCCCcccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhH
Q 044568          125 ILMDEFWTAKILDFGLAKL---PNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEI  201 (257)
Q Consensus       125 il~~~~~~~kl~dfg~~~~---~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~  201 (257)
                      .+++.+|++|+.|||+++.   .+......+||+.|+|||++....|+.+.|+|.+|+++|||++|+.||...+..    
T Consensus       299 LlLDkDGHIKitDFGLCKE~I~~g~t~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~dh~----  374 (516)
T KOG0690|consen  299 LLLDKDGHIKITDFGLCKEEIKYGDTTKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNKDHE----  374 (516)
T ss_pred             heeccCCceEeeecccchhcccccceeccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCcccccchh----
Confidence            9999999999999999974   344557789999999999999999999999999999999999999999855211    


Q ss_pred             HHHHHHHHhhhhhhhhh--hhcCCCCCHHHHHHHHHHHHHcccCCCCCCC
Q 044568          202 ILTNWVYKCFINRELNK--LVRGTKVDKKNLENLVKVGLWCVQDEPALRP  249 (257)
Q Consensus       202 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP  249 (257)
                                   .+-.  +.....+|....++...|+...|.+||.+|.
T Consensus       375 -------------kLFeLIl~ed~kFPr~ls~eAktLLsGLL~kdP~kRL  411 (516)
T KOG0690|consen  375 -------------KLFELILMEDLKFPRTLSPEAKTLLSGLLKKDPKKRL  411 (516)
T ss_pred             -------------HHHHHHHhhhccCCccCCHHHHHHHHHHhhcChHhhc
Confidence                         1111  1122245666667778888899999999995

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.97  E-value=3.3e-31  Score=225.96  Aligned_cols=241  Identities=20%  Similarity=0.287  Sum_probs=177.0

Q ss_pred             ccccceeeecccCCCCCeeeccc------hhhhHHHHhHhhhccccccccCCceeeeceeeeecC----ceeEEEeecCC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTS----VSGKIERPVRN   73 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~----~~~lV~E~~~~   73 (257)
                      ++|+.||||++.+ +.++||...      |.+|-+.++       ...+.|+||+++.+.-+..+    ..+||+||.+.
T Consensus       221 Grfg~V~KaqL~~-~~VAVKifp~~~kqs~~~Ek~Iy~-------lp~m~h~nIl~Fi~~ekr~t~~~~eywLVt~fh~k  292 (534)
T KOG3653|consen  221 GRFGCVWKAQLDN-RLVAVKIFPEQEKQSFQNEKNIYS-------LPGMKHENILQFIGAEKRGTADRMEYWLVTEFHPK  292 (534)
T ss_pred             CccceeehhhccC-ceeEEEecCHHHHHHHHhHHHHHh-------ccCccchhHHHhhchhccCCccccceeEEeeeccC
Confidence            6899999999988 788888765      445554444       44778999999999988777    89999999999


Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCC------CCCeeeccCCCCceeeCCCCceEEeeecccccCCC-
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDEC------EPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE-  146 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~------~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~-  146 (257)
                      |||.++|   ...+.+|....+++..++.||+|||+--      +++|+|||+|..|||+.++++..|+|||++.+... 
T Consensus       293 GsL~dyL---~~ntisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFGLAl~~~p~  369 (534)
T KOG3653|consen  293 GSLCDYL---KANTISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFGLALRLEPG  369 (534)
T ss_pred             CcHHHHH---HhccccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeeccceeEEecCC
Confidence            9999999   5578999999999999999999999863      67899999999999999999999999999876432 


Q ss_pred             ----CcccccCCCCccCcccccCCC-CC-----ccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHH---------HHH
Q 044568          147 ----DFVIDKRDKGYMAPECYKRTP-IS-----VKADVYGYGIVLLETICCRKNMEIDASKPEEIILT---------NWV  207 (257)
Q Consensus       147 ----~~~~~~~~~~~~aPE~~~~~~-~~-----~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~---------~~~  207 (257)
                          +.....||.+|||||++.+.. +.     .+.||||+|.++||++++-.-++....++......         .-.
T Consensus       370 ~~~~d~~~qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~~~~vp~Yqlpfe~evG~hPt~e~m  449 (534)
T KOG3653|consen  370 KPQGDTHGQVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDADPGPVPEYQLPFEAEVGNHPTLEEM  449 (534)
T ss_pred             CCCcchhhhhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcccCchhHHhcCCCCHHHH
Confidence                224578999999999997542 22     46899999999999998654442110111000000         000


Q ss_pred             HHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          208 YKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +........+..++...........+.+.+..||+.||+.|. +.-+-+
T Consensus       450 q~~VV~kK~RP~~p~~W~~h~~~~~l~et~EeCWDhDaeARLTA~Cv~e  498 (534)
T KOG3653|consen  450 QELVVRKKQRPKIPDAWRKHAGMAVLCETIEECWDHDAEARLTAGCVEE  498 (534)
T ss_pred             HHHHHhhccCCCChhhhhcCccHHHHHHHHHHHcCCchhhhhhhHHHHH
Confidence            111111111122221111224467889999999999999999 665543

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.97  E-value=7.8e-31  Score=227.06  Aligned_cols=236  Identities=16%  Similarity=0.182  Sum_probs=170.6

Q ss_pred             ccccceeeecccCC-CCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCc------ee
Q 044568            4 TKLSNFYRSSFNAR-NSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSV------SG   65 (257)
Q Consensus         4 ~~~~~~y~~~~~~~-~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~------~~   65 (257)
                      +.++.||+++...+ ..+++|....           .++++         .+.++.|+|++++.+.+...+.      .+
T Consensus        26 g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~---------~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~   96 (343)
T cd07851          26 GAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELR---------LLKHMDHENVIGLLDVFTPASSLEDFQDVY   96 (343)
T ss_pred             CCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHH---------HHHhccCCCHHHHHHHhhccccccccccEE
Confidence            45789999997654 4556665432           12222         3347889999999887765554      89


Q ss_pred             EEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC
Q 044568           66 KIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN  145 (257)
Q Consensus        66 lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~  145 (257)
                      +|+||+ +++|.+++..   ..+++.++..++.|++.|+.|||+.   +++|+||+|+||+++.++.++|+|||.+....
T Consensus        97 lv~e~~-~~~L~~~~~~---~~l~~~~~~~~~~ql~~aL~~LH~~---gi~H~dlkp~Nill~~~~~~kL~dfg~~~~~~  169 (343)
T cd07851          97 LVTHLM-GADLNNIVKC---QKLSDDHIQFLVYQILRGLKYIHSA---GIIHRDLKPSNIAVNEDCELKILDFGLARHTD  169 (343)
T ss_pred             EEEecC-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCCEEEcccccccccc
Confidence            999999 5699999953   5699999999999999999999999   99999999999999999999999999987655


Q ss_pred             CCcccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHH-------HHhhhhhhhh
Q 044568          146 EDFVIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWV-------YKCFINRELN  217 (257)
Q Consensus       146 ~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~-------~~~~~~~~~~  217 (257)
                      .......++..|+|||.+.+. .++.++|+||||+++||+++|+.||...........+....       ..........
T Consensus       170 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  249 (343)
T cd07851         170 DEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGSDHIDQLKRIMNLVGTPDEELLQKISSESAR  249 (343)
T ss_pred             ccccCCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHhcCCCCHHHHhhccchhHH
Confidence            444455677789999998653 57899999999999999999999997542211100000000       0000000011


Q ss_pred             hhhcCC---------CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          218 KLVRGT---------KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       218 ~~~~~~---------~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ..+...         .........+.+++.+||+.+|++|| +.|+++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~s~~l~dli~~~l~~~P~~Rpt~~ell~  297 (343)
T cd07851         250 NYIQSLPQMPKKDFKEVFSGANPLAIDLLEKMLVLDPDKRITAAEALA  297 (343)
T ss_pred             HHHHhccccCCCCHHHHhccCCHHHHHHHHHhCCCChhhCCCHHHHhc
Confidence            111100         00011256789999999999999999 999875

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.97  E-value=4.1e-30  Score=222.78  Aligned_cols=245  Identities=14%  Similarity=0.120  Sum_probs=169.1

Q ss_pred             ccccceeeeccc-CCCCCeeeccch--hhhHHHHhHhhhccccccccCCceeeeceeeeec------CceeEEEeecCCC
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW--TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT------SVSGKIERPVRNG   74 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~------~~~~lV~E~~~~g   74 (257)
                      +.++.||++... ++..+++|...-  ............-..+.+++|+|++++.+.+...      ...+++++++ ++
T Consensus        28 G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~~~~-~~  106 (345)
T cd07877          28 GAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLM-GA  106 (345)
T ss_pred             cCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeeeecccccccccEEEEehhc-cc
Confidence            567889999854 566667776531  1110000000000133388999999998877543      3468888887 67


Q ss_pred             CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcccccCC
Q 044568           75 SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRD  154 (257)
Q Consensus        75 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~  154 (257)
                      +|.+++.   ...+++..+..++.|++.|+.|||++   +++|+||+|+||++++++.++|+|||++...........++
T Consensus       107 ~L~~~~~---~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIll~~~~~~kl~dfg~~~~~~~~~~~~~~~  180 (345)
T cd07877         107 DLNNIVK---CQKLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVAT  180 (345)
T ss_pred             CHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChHHEEEcCCCCEEEecccccccccccccccccC
Confidence            9999885   34689999999999999999999999   99999999999999999999999999987655554555678


Q ss_pred             CCccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHH-------HHhhhhhhhhhh---hcCC
Q 044568          155 KGYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWV-------YKCFINRELNKL---VRGT  223 (257)
Q Consensus       155 ~~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~---~~~~  223 (257)
                      ..|+|||.+.+ ..++.++|+||||+++||+++|+.||................       ............   ++..
T Consensus       181 ~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (345)
T cd07877         181 RWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQM  260 (345)
T ss_pred             CCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHhhcccHhHHHHHHHhccc
Confidence            88999998866 457889999999999999999999996542211100000000       000000000000   0000


Q ss_pred             ---CC---CHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          224 ---KV---DKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       224 ---~~---~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                         .+   .....+.+.+++.+|++.||.+|| +.|+++
T Consensus       261 ~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~  299 (345)
T cd07877         261 PKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA  299 (345)
T ss_pred             CCcchhhhcCCCCHHHHHHHHHHcCCChhhcCCHHHHhc
Confidence               00   001345688999999999999999 999875

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.97  E-value=1.5e-31  Score=240.43  Aligned_cols=229  Identities=21%  Similarity=0.238  Sum_probs=180.8

Q ss_pred             cccccceeeecc-cCCCCC----eeeccch-h---hhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCC
Q 044568            3 CTKLSNFYRSSF-NARNSP----WISRVSW-T---ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRN   73 (257)
Q Consensus         3 ~~~~~~~y~~~~-~~~~~~----~i~~~~~-~---~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~   73 (257)
                      .+-|+.||||-+ .+++.+    +||.+.- .   .-.+++.   ....+.+++|+|++++.+.+.... ..||++||+.
T Consensus       706 sgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~Ld---eAl~masldHpnl~RLLgvc~~s~-~qlvtq~mP~  781 (1177)
T KOG1025|consen  706 SGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLD---EALRMASLDHPNLLRLLGVCMLST-LQLVTQLMPL  781 (1177)
T ss_pred             cccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHH---HHHHHhcCCCchHHHHhhhcccch-HHHHHHhccc
Confidence            356889999984 444443    3444332 1   1122222   222344999999999999999877 8899999999


Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcccc--
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID--  151 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~--  151 (257)
                      |+|.++++. ...++.....+.|..||++|+.|||++   .++||||.++|+|+.....+|+.|||+++.........  
T Consensus       782 G~LlDyvr~-hr~~igsq~lLnw~~QIAkgM~YLe~q---rlVHrdLaaRNVLVksP~hvkitdfgla~ll~~d~~ey~~  857 (1177)
T KOG1025|consen  782 GCLLDYVRE-HRDNIGSQDLLNWCYQIAKGMKYLEEQ---RLVHRDLAARNVLVKSPNHVKITDFGLAKLLAPDEKEYSA  857 (1177)
T ss_pred             chHHHHHHH-hhccccHHHHHHHHHHHHHHHHHHHhc---chhhhhhhhhheeecCCCeEEEEecchhhccCcccccccc
Confidence            999999987 667788899999999999999999999   99999999999999999999999999998755443221  


Q ss_pred             -cC--CCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC---C
Q 044568          152 -KR--DKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT---K  224 (257)
Q Consensus       152 -~~--~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  224 (257)
                       .+  .+-|+|-|.+....|+.++||||||+++||++| |..|+++..-                 .++.++++..   +
T Consensus       858 ~~gK~pikwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~~-----------------~eI~dlle~geRLs  920 (1177)
T KOG1025|consen  858 PGGKVPIKWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIPA-----------------EEIPDLLEKGERLS  920 (1177)
T ss_pred             cccccCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccCCCCH-----------------HHhhHHHhccccCC
Confidence             22  234999999999999999999999999999999 9999976521                 2222333322   5


Q ss_pred             CCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHh
Q 044568          225 VDKKNLENLVKVGLWCVQDEPALRP-MKCAVMM  256 (257)
Q Consensus       225 ~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~  256 (257)
                      .|.-+.-.++-++.+||..|+..|| ++++...
T Consensus       921 qPpiCtiDVy~~mvkCwmid~~~rp~fkel~~~  953 (1177)
T KOG1025|consen  921 QPPICTIDVYMVMVKCWMIDADSRPTFKELAEE  953 (1177)
T ss_pred             CCCCccHHHHHHHHHHhccCcccCccHHHHHHH
Confidence            6777888999999999999999999 9998754

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.97  E-value=6.9e-31  Score=212.95  Aligned_cols=193  Identities=17%  Similarity=0.165  Sum_probs=158.1

Q ss_pred             cCCceeeeceeeee----cCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCC
Q 044568           47 RGGLLLNVPVRAKL----TSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKP  122 (257)
Q Consensus        47 ~h~~i~~~~~~~~~----~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~  122 (257)
                      .|+|||++...+.+    .....+|||.|+||.|...+.+.....+++.++..++.||+.|+.|||+.   +|.|||+||
T Consensus       113 ~h~~iV~IidVyeNs~~~rkcLLiVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH~~---nIAHRDlKp  189 (400)
T KOG0604|consen  113 GHPHIVSIIDVYENSYQGRKCLLIVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLHSM---NIAHRDLKP  189 (400)
T ss_pred             CCCceEEeehhhhhhccCceeeEeeeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhc---chhhccCCh
Confidence            59999999987775    34556899999999999999987888899999999999999999999999   999999999


Q ss_pred             CceeeC---CCCceEEeeecccccCC--CCcccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCC
Q 044568          123 QNILMD---EFWTAKILDFGLAKLPN--EDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASK  197 (257)
Q Consensus       123 ~nil~~---~~~~~kl~dfg~~~~~~--~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~  197 (257)
                      +|+|..   .+..+||+|||+++...  ......+.|+.|.|||.+....|+...|+||+|+++|-|++|.+||.+....
T Consensus       190 ENLLyt~t~~na~lKLtDfGFAK~t~~~~~L~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPFYS~hg~  269 (400)
T KOG0604|consen  190 ENLLYTTTSPNAPLKLTDFGFAKETQEPGDLMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGL  269 (400)
T ss_pred             hheeeecCCCCcceEecccccccccCCCccccCCcccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCcccccCCc
Confidence            999986   45679999999998755  4456778899999999999888999999999999999999999999865332


Q ss_pred             hhhHHHHHHHHHhhhhhhhhhhhcCC------CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          198 PEEIILTNWVYKCFINRELNKLVRGT------KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .-...             ....+...      +......+...++++.+|..+|.+|. +.|++.
T Consensus       270 aispg-------------Mk~rI~~gqy~FP~pEWs~VSe~aKdlIR~LLkt~PteRlTI~~~m~  321 (400)
T KOG0604|consen  270 AISPG-------------MKRRIRTGQYEFPEPEWSCVSEAAKDLIRKLLKTEPTERLTIEEVMD  321 (400)
T ss_pred             cCChh-------------HHhHhhccCccCCChhHhHHHHHHHHHHHHHhcCCchhheeHHHhhc
Confidence            21111             11111111      12233457788999999999999999 998864

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.97  E-value=6.5e-31  Score=230.49  Aligned_cols=223  Identities=15%  Similarity=0.153  Sum_probs=180.2

Q ss_pred             ccccceeeec-ccCCCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            4 TKLSNFYRSS-FNARNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~-~~~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      ++|+.|..++ -+++.+++||-..           +.+|++.+.         .+.|||||++..........++||||+
T Consensus        67 g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk---------~l~HPnIvkl~~v~~t~~~lylV~eya  137 (596)
T KOG0586|consen   67 GNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMK---------SLNHPNIVKLFSVIETEATLYLVMEYA  137 (596)
T ss_pred             ceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHH---------hcCCcceeeeeeeeeecceeEEEEEec
Confidence            5677787777 4566677776433           234444444         899999999999999999999999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC--Ccc
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE--DFV  149 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~--~~~  149 (257)
                      .+|.+.+++.  ....+.+..+..++.|+++|++|||++   +|+|||||+.|++++.+.++||+|||++.....  ...
T Consensus       138 ~~ge~~~yl~--~~gr~~e~~ar~~F~q~vsaveYcH~k---~ivHrdLk~eNilL~~~mnikIaDfgfS~~~~~~~~lq  212 (596)
T KOG0586|consen  138 SGGELFDYLV--KHGRMKEKEARAKFRQIVSAVEYCHSK---NIVHRDLKAENILLDENMNIKIADFGFSTFFDYGLMLQ  212 (596)
T ss_pred             cCchhHHHHH--hcccchhhhhhhhhHHHHHHHHHHhhc---ceeccccchhhcccccccceeeeccccceeeccccccc
Confidence            9999999998  566777799999999999999999999   999999999999999999999999999886543  336


Q ss_pred             cccCCCCccCcccccCCCCC-ccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHH
Q 044568          150 IDKRDKGYMAPECYKRTPIS-VKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKK  228 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~~~~~-~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (257)
                      ..+|++.|.|||.+.+..|. +++|+||+|+++|-++.|..||++..-..            .....   +......+.-
T Consensus       213 t~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG~~lk~------------Lr~rv---l~gk~rIp~~  277 (596)
T KOG0586|consen  213 TFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDGQNLKE------------LRPRV---LRGKYRIPFY  277 (596)
T ss_pred             ccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeecccccCCccccc------------ccchh---eeeeecccce
Confidence            77899999999999988874 89999999999999999999998652111            00001   1111134445


Q ss_pred             HHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          229 NLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       229 ~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ...++.+++.+++-.+|.+|+ +++|.+
T Consensus       278 ms~dce~lLrk~lvl~Pskr~~~dqim~  305 (596)
T KOG0586|consen  278 MSCDCEDLLRKFLVLNPSKRGPCDQIMK  305 (596)
T ss_pred             eechhHHHHHHhhccCccccCCHHHhhh
Confidence            556788888999999999999 998864

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.97  E-value=5.7e-30  Score=220.65  Aligned_cols=236  Identities=16%  Similarity=0.119  Sum_probs=165.7

Q ss_pred             ccccceeeecccCC---CCCeeeccch-----------hhhHHHHhHhhhccccccc-cCCceeeeceeeee----cCce
Q 044568            4 TKLSNFYRSSFNAR---NSPWISRVSW-----------TADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKL----TSVS   64 (257)
Q Consensus         4 ~~~~~~y~~~~~~~---~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~----~~~~   64 (257)
                      +.++.||++.....   ..+++|...-           .+|++.+.         ++ .|+|++++.+.+..    ....
T Consensus        11 G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~---------~l~~h~~iv~~~~~~~~~~~~~~~~   81 (332)
T cd07857          11 GAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLR---------HFRGHKNITCLYDMDIVFPGNFNEL   81 (332)
T ss_pred             cCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHH---------HhcCCCChheeeeeeeeccccCCcE
Confidence            46789999997653   4566775431           22333222         45 49999999886543    2457


Q ss_pred             eEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccC
Q 044568           65 GKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLP  144 (257)
Q Consensus        65 ~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~  144 (257)
                      ++++||+. ++|.+.+.  ....+++..+..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||.+...
T Consensus        82 ~~~~e~~~-~~L~~~l~--~~~~~~~~~~~~~~~qi~~aL~~LH~~---givH~dlkp~Nili~~~~~~kl~Dfg~a~~~  155 (332)
T cd07857          82 YLYEELME-ADLHQIIR--SGQPLTDAHFQSFIYQILCGLKYIHSA---NVLHRDLKPGNLLVNADCELKICDFGLARGF  155 (332)
T ss_pred             EEEEeccc-CCHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHeEEcCCCCEEeCcCCCceec
Confidence            88999986 69999986  556799999999999999999999999   9999999999999999999999999998743


Q ss_pred             CCC-------cccccCCCCccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhH------------HHH
Q 044568          145 NED-------FVIDKRDKGYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEI------------ILT  204 (257)
Q Consensus       145 ~~~-------~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~------------~~~  204 (257)
                      ...       .....++..|+|||.+.+ ..++.++|+||+|+++|++++|..||..........            .+.
T Consensus       156 ~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~  235 (332)
T cd07857         156 SENPGENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKGKDYVDQLNQILQVLGTPDEETLS  235 (332)
T ss_pred             ccccccccccccCcccCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcCCCCCCHHHHHHHHHHHhCCCCHHHHH
Confidence            321       122356788999998765 468899999999999999999999997542111000            000


Q ss_pred             HHHHHhhhhhhhhhhhcCC-----CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          205 NWVYKCFINRELNKLVRGT-----KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .+..+.. .......-...     .........+.+++.+||+.||++|| +.|+++
T Consensus       236 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~ll~  291 (332)
T cd07857         236 RIGSPKA-QNYIRSLPNIPKKPFESIFPNANPLALDLLEKLLAFDPTKRISVEEALE  291 (332)
T ss_pred             hhhhhhH-HHHHHhccccCCcchHhhCCCCCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence            0000000 00000000000     00111246788999999999999999 999874

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.97  E-value=5e-30  Score=209.51  Aligned_cols=225  Identities=19%  Similarity=0.176  Sum_probs=175.2

Q ss_pred             ccceeeecccC-CCCCeeeccch----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCC
Q 044568            6 LSNFYRSSFNA-RNSPWISRVSW----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNG   74 (257)
Q Consensus         6 ~~~~y~~~~~~-~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~g   74 (257)
                      ++.+|++.... ++.+++|....          .++++.+.         ++.|++++++.+.+...+..++++||++++
T Consensus         2 ~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~---------~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~   72 (244)
T smart00220        2 FGKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILK---------KLKHPNIVRLYDVFEDEDKLYLVMEYCDGG   72 (244)
T ss_pred             ceEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHH---------hCCCCcHHHHHhheeeCCEEEEEEeCCCCC
Confidence            67899999875 66677776543          23333333         678999999999999999999999999999


Q ss_pred             CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC--ccccc
Q 044568           75 SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED--FVIDK  152 (257)
Q Consensus        75 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~--~~~~~  152 (257)
                      +|.+++..  ...+++..+..++.+++.++.+||+.   +++|+|++|.||++++++.++++|||.+......  .....
T Consensus        73 ~L~~~~~~--~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~  147 (244)
T smart00220       73 DLFDLLKK--RGRLSEDEARFYARQILSALEYLHSN---GIIHRDLKPENILLDEDGHVKLADFGLARQLDPGGLLTTFV  147 (244)
T ss_pred             CHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHHHHc---CeecCCcCHHHeEECCCCcEEEccccceeeecccccccccc
Confidence            99999974  23388999999999999999999999   9999999999999999999999999998765442  34456


Q ss_pred             CCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHH
Q 044568          153 RDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLEN  232 (257)
Q Consensus       153 ~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (257)
                      ++..|++||.+....++.++|+||+|+++|++++|..||.......   .......    .    ............+..
T Consensus       148 ~~~~~~~pE~~~~~~~~~~~Di~slG~~l~~l~~~~~p~~~~~~~~---~~~~~~~----~----~~~~~~~~~~~~~~~  216 (244)
T smart00220      148 GTPEYMAPEVLLGKGYGKAVDVWSLGVILYELLTGKPPFPGDDQLL---ELFKKIG----K----PKPPFPPPEWKISPE  216 (244)
T ss_pred             CCcCCCCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCcHH---HHHHHHh----c----cCCCCccccccCCHH
Confidence            6778999999988888999999999999999999999997531111   0000000    0    000000111114567


Q ss_pred             HHHHHHHcccCCCCCCC-hHHHHH
Q 044568          233 LVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       233 l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +.+++.+||..+|++|| +.++++
T Consensus       217 ~~~~i~~~l~~~p~~Rp~~~~~~~  240 (244)
T smart00220      217 AKDLIRKLLVKDPEKRLTAEEALQ  240 (244)
T ss_pred             HHHHHHHHccCCchhccCHHHHhh
Confidence            89999999999999999 999986

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.97  E-value=3e-30  Score=223.35  Aligned_cols=236  Identities=13%  Similarity=0.147  Sum_probs=164.3

Q ss_pred             ccccceeeecccC-CCCCeeeccc---------hhhhHHHHhHhhhccccccccCCceeeeceeeeec------------
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS---------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT------------   61 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~------------   61 (257)
                      +.++.||++.... +..+++|...         +.+|++.+.         ++.|+|++++.+.....            
T Consensus        16 g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~---------~l~h~~i~~~~~~~~~~~~~~~~~~~~~~   86 (342)
T cd07854          16 GSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIR---------RLDHDNIVKVYEVLGPSGSDLTEDVGSLT   86 (342)
T ss_pred             CCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHH---------hcCCCcchhhHhhhccccccccccccccc
Confidence            5678999998654 5566666543         234444444         88899999988655543            


Q ss_pred             --CceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCC-CCceEEeee
Q 044568           62 --SVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE-FWTAKILDF  138 (257)
Q Consensus        62 --~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~-~~~~kl~df  138 (257)
                        ...++||||++ ++|.+++.   ...+++..+..++.|+++||.|||++   +++|+||+|+||+++. ++.++++||
T Consensus        87 ~~~~~~lv~e~~~-~~L~~~~~---~~~l~~~~~~~~~~qi~~aL~~LH~~---givH~dikp~Nili~~~~~~~kl~df  159 (342)
T cd07854          87 ELNSVYIVQEYME-TDLANVLE---QGPLSEEHARLFMYQLLRGLKYIHSA---NVLHRDLKPANVFINTEDLVLKIGDF  159 (342)
T ss_pred             ccceEEEEeeccc-ccHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEcCCCceEEECCc
Confidence              35789999997 59998885   34689999999999999999999999   9999999999999974 557899999


Q ss_pred             cccccCCCCc------ccccCCCCccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHH-H----
Q 044568          139 GLAKLPNEDF------VIDKRDKGYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTN-W----  206 (257)
Q Consensus       139 g~~~~~~~~~------~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~-~----  206 (257)
                      |.+.......      ....++..|+|||.+.. ..++.++|||||||++|+|++|+.||.............. .    
T Consensus       160 g~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~  239 (342)
T cd07854         160 GLARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAHELEQMQLILESVPVVR  239 (342)
T ss_pred             ccceecCCccccccccccccccccccCHHHHhCccccCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCC
Confidence            9886532211      22345677999998754 4578899999999999999999999975422111100000 0    


Q ss_pred             --HHHhhhhhhhhhhh---cCCC-----CCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          207 --VYKCFINRELNKLV---RGTK-----VDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       207 --~~~~~~~~~~~~~~---~~~~-----~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                        ..............   ....     ........+.+++.+||+.||++|| +.|+++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~ell~  299 (342)
T cd07854         240 EEDRNELLNVIPSFVRNDGGEPRRPLRDLLPGVNPEALDFLEQILTFNPMDRLTAEEALM  299 (342)
T ss_pred             hHHhhhhhhhhhhhhhhcccccCCCHHHHccCCCHHHHHHHHHHhCCCchhccCHHHHhC
Confidence              00000000000000   0000     0112346788999999999999999 999974

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.97  E-value=9.4e-32  Score=218.47  Aligned_cols=223  Identities=20%  Similarity=0.176  Sum_probs=180.9

Q ss_pred             ccceeeecccCCCCC-eeeccc----hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHHH
Q 044568            6 LSNFYRSSFNARNSP-WISRVS----WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDII   80 (257)
Q Consensus         6 ~~~~y~~~~~~~~~~-~i~~~~----~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l   80 (257)
                      .+.||++-..+.+.+ +||++.    ++.+++-+++      +.....+.+|+++|.....+..++|||||.-||+.+++
T Consensus        46 YGSV~KAIH~EsG~v~AIK~VPV~sDLQEIIKEISI------MQQC~S~yVVKYYGSYFK~sDLWIVMEYCGAGSiSDI~  119 (502)
T KOG0574|consen   46 YGSVHKAIHRESGHVLAIKKVPVDTDLQEIIKEISI------MQQCKSKYVVKYYGSYFKHSDLWIVMEYCGAGSISDIM  119 (502)
T ss_pred             chHHHHHHHhccCcEEEEEecCccchHHHHHHHHHH------HHHcCCchhhhhhhhhccCCceEeehhhcCCCcHHHHH
Confidence            355677766665554 577755    4566665553      22456788999999998999999999999999999999


Q ss_pred             hccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc---ccccCCCCc
Q 044568           81 FCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF---VIDKRDKGY  157 (257)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~---~~~~~~~~~  157 (257)
                      +- .+++|++.+...++.+.+.||+|||..   .-+|||||+.|||+.-+|..||+|||++-....+.   ....||+.|
T Consensus       120 R~-R~K~L~E~EIs~iL~~TLKGL~YLH~~---~KIHRDIKAGNILLNT~G~AKLADFGVAGQLTDTMAKRNTVIGTPFW  195 (502)
T KOG0574|consen  120 RA-RRKPLSEQEISAVLRDTLKGLQYLHDL---KKIHRDIKAGNILLNTDGIAKLADFGVAGQLTDTMAKRNTVIGTPFW  195 (502)
T ss_pred             HH-hcCCccHHHHHHHHHHHHhHHHHHHHH---HHHHhhcccccEEEcccchhhhhhccccchhhhhHHhhCccccCccc
Confidence            86 778999999999999999999999999   99999999999999999999999999986554443   456899999


Q ss_pred             cCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc---CC--CCCHHHHHH
Q 044568          158 MAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR---GT--KVDKKNLEN  232 (257)
Q Consensus       158 ~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~  232 (257)
                      +|||++..-.|+.++||||+|+...||.-|++||..-.+-.                 ..-+++   +.  .-+.....+
T Consensus       196 MAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDIHPMR-----------------AIFMIPT~PPPTF~KPE~WS~~  258 (502)
T KOG0574|consen  196 MAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDIHPMR-----------------AIFMIPTKPPPTFKKPEEWSSE  258 (502)
T ss_pred             ccHHHHHHhccchhhhHhhhcchhhhhhcCCCCcccccccc-----------------eeEeccCCCCCCCCChHhhhhH
Confidence            99999999999999999999999999999999997431100                 001111   11  235667788


Q ss_pred             HHHHHHHcccCCCCCCC-hHHHHH
Q 044568          233 LVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       233 l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +.+++..||-++|++|- +.++++
T Consensus       259 F~DFi~~CLiK~PE~R~TA~~L~~  282 (502)
T KOG0574|consen  259 FNDFIRSCLIKKPEERKTALRLCE  282 (502)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHhh
Confidence            99999999999999999 888765

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.97  E-value=3.3e-30  Score=206.81  Aligned_cols=236  Identities=16%  Similarity=0.185  Sum_probs=171.1

Q ss_pred             ccccceeeecccCCCCC-eeeccch---hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHH
Q 044568            4 TKLSNFYRSSFNARNSP-WISRVSW---TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDI   79 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~-~i~~~~~---~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~   79 (257)
                      +.++.|.+..+..++.. ++|+..-   ..|.+-+-.-+.- -+....-+.||+..|++......++.||.|. ..++..
T Consensus       103 GtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldv-v~~s~dcpyIV~c~GyFi~n~dV~IcMelMs-~C~ekL  180 (391)
T KOG0983|consen  103 GTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDV-VLKSHDCPYIVQCFGYFITNTDVFICMELMS-TCAEKL  180 (391)
T ss_pred             CCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhH-HhhccCCCeeeeeeeEEeeCchHHHHHHHHH-HHHHHH
Confidence            45677888887765444 4665431   2222221111111 1113335889999999999999999999994 356666


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC--cccccCCCCc
Q 044568           80 IFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED--FVIDKRDKGY  157 (257)
Q Consensus        80 l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~--~~~~~~~~~~  157 (257)
                      +.. -...+++...-++...+++||.||-++  ++|+|||+||+|||+|+.|++|++|||.+-+....  .....|.+.|
T Consensus       181 lkr-ik~piPE~ilGk~tva~v~AL~YLKeK--H~viHRDvKPSNILlDe~GniKlCDFGIsGrlvdSkAhtrsAGC~~Y  257 (391)
T KOG0983|consen  181 LKR-IKGPIPERILGKMTVAIVKALYYLKEK--HGVIHRDVKPSNILLDERGNIKLCDFGISGRLVDSKAHTRSAGCAAY  257 (391)
T ss_pred             HHH-hcCCchHHhhhhhHHHHHHHHHHHHHh--cceeecccCccceEEccCCCEEeecccccceeecccccccccCCccc
Confidence            654 556688888889999999999999887  59999999999999999999999999998754433  3566788899


Q ss_pred             cCccccc---CCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHH
Q 044568          158 MAPECYK---RTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLV  234 (257)
Q Consensus       158 ~aPE~~~---~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  234 (257)
                      +|||.+.   +..|+.++||||||+.++|+.||+.||.+...+-  ..+...     .+.+. ..+++.   ....+.+.
T Consensus       258 MaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~tdF--e~ltkv-----ln~eP-P~L~~~---~gFSp~F~  326 (391)
T KOG0983|consen  258 MAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGCKTDF--EVLTKV-----LNEEP-PLLPGH---MGFSPDFQ  326 (391)
T ss_pred             cCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCCCCccH--HHHHHH-----HhcCC-CCCCcc---cCcCHHHH
Confidence            9999986   3468999999999999999999999998753221  111111     11111 222222   12557789


Q ss_pred             HHHHHcccCCCCCCC-hHHHHH
Q 044568          235 KVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       235 ~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +++..||.+|+.+|| -.++++
T Consensus       327 ~fv~~CL~kd~r~RP~Y~~Ll~  348 (391)
T KOG0983|consen  327 SFVKDCLTKDHRKRPKYNKLLE  348 (391)
T ss_pred             HHHHHHhhcCcccCcchHHHhc
Confidence            999999999999999 998875

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=7.5e-30  Score=216.30  Aligned_cols=236  Identities=23%  Similarity=0.265  Sum_probs=182.1

Q ss_pred             ccccceeeecccCCCCCeeeccc------hhhhHHHHhHhhhccccccccCCceeeeceeeeec----CceeEEEeecCC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT----SVSGKIERPVRN   73 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~----~~~~lV~E~~~~   73 (257)
                      +.+++|.||++ .|+.+++|-+.      +.+|.|.+.       -.-+||+||+.+++....+    .+.+||++|.++
T Consensus       222 GRyGEVwrG~w-rGe~VAVKiF~srdE~SWfrEtEIYq-------TvmLRHENILgFIaaD~~~~gs~TQLwLvTdYHe~  293 (513)
T KOG2052|consen  222 GRFGEVWRGRW-RGEDVAVKIFSSRDERSWFRETEIYQ-------TVMLRHENILGFIAADNKDNGSWTQLWLVTDYHEH  293 (513)
T ss_pred             ccccceeeccc-cCCceEEEEecccchhhhhhHHHHHH-------HHHhccchhhhhhhccccCCCceEEEEEeeecccC
Confidence            56889999998 47888988654      566676665       2356799999998877654    378899999999


Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhC-----CCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC-
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDE-----CEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED-  147 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~-----~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~-  147 (257)
                      |||.|+|.   ..+++....++++..+++||.|||..     ++|.|.|||||+.|||+.+++.+-|+|+|++...... 
T Consensus       294 GSL~DyL~---r~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLGLAv~h~~~t  370 (513)
T KOG2052|consen  294 GSLYDYLN---RNTVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSDT  370 (513)
T ss_pred             CcHHHHHh---hccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEeeceeeEEecccC
Confidence            99999994   47899999999999999999999964     5889999999999999999999999999998754333 


Q ss_pred             ------cccccCCCCccCcccccCCC----CC--ccccchhHHHHHHHHHhc----------CCCCCcCCCChhhHHHHH
Q 044568          148 ------FVIDKRDKGYMAPECYKRTP----IS--VKADVYGYGIVLLETICC----------RKNMEIDASKPEEIILTN  205 (257)
Q Consensus       148 ------~~~~~~~~~~~aPE~~~~~~----~~--~~~Di~s~G~~l~el~~g----------~~pf~~~~~~~~~~~~~~  205 (257)
                            .....||.+|||||++...-    +.  ..+||||||.++||++-+          +.||..-.+.+.....  
T Consensus       371 ~~idi~~N~rVGTKRYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~Vp~DPs~ee--  448 (513)
T KOG2052|consen  371 DTIDIPPNPRVGTKRYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLPYYDVVPSDPSFEE--  448 (513)
T ss_pred             CcccCCCCCccceeeccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcccCCCCCCCHHH--
Confidence                  36779999999999997532    21  468999999999999852          4677654333221110  


Q ss_pred             HHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHH
Q 044568          206 WVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCA  253 (257)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei  253 (257)
                       ..+..-...++..+++...+.+....+.+++..||..+|..|- +=-|
T Consensus       449 -MrkVVCv~~~RP~ipnrW~s~~~l~~m~klMkeCW~~Np~aRltALri  496 (513)
T KOG2052|consen  449 -MRKVVCVQKLRPNIPNRWKSDPALRVMAKLMKECWYANPAARLTALRI  496 (513)
T ss_pred             -HhcceeecccCCCCCcccccCHHHHHHHHHHHHhhcCCchhhhHHHHH
Confidence             0111112334455555566788889999999999999999998 5433

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.96  E-value=5.2e-29  Score=232.37  Aligned_cols=132  Identities=17%  Similarity=0.195  Sum_probs=106.5

Q ss_pred             ccccceeeeccc-CCCCCeeeccchhh-----hHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHH
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSWTA-----DIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLT   77 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~   77 (257)
                      +.++.||++... ++..+++|.+....     ..+.+.  ..-..+..++|+||+++...+...+..+|||||+.+++|.
T Consensus        15 G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~--~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lVmEy~~g~~L~   92 (669)
T cd05610          15 GAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQ--AERDALALSKSPFIVHLYYSLQSANNVYLVMEYLIGGDVK   92 (669)
T ss_pred             CCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHH--HHHHHHHhcCCCCcCeEEEEEEECCEEEEEEeCCCCCCHH
Confidence            568899999977 45667777654210     011111  0011223778999999999999999999999999999999


Q ss_pred             HHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccc
Q 044568           78 DIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK  142 (257)
Q Consensus        78 ~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~  142 (257)
                      +++.  ....+++..++.++.|++.||.|||++   +|+||||||+|||++.++.++|+|||+++
T Consensus        93 ~li~--~~~~l~~~~~~~i~~qil~aL~yLH~~---gIiHrDLKP~NILl~~~g~vkL~DFGls~  152 (669)
T cd05610          93 SLLH--IYGYFDEEMAVKYISEVALALDYLHRH---GIIHRDLKPDNMLISNEGHIKLTDFGLSK  152 (669)
T ss_pred             HHHH--hcCCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCccHHHEEEcCCCCEEEEeCCCCc
Confidence            9997  345688899999999999999999999   99999999999999999999999999864

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=1.1e-29  Score=214.07  Aligned_cols=182  Identities=19%  Similarity=0.234  Sum_probs=157.4

Q ss_pred             cCCceeeeceeeeecCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCcee
Q 044568           47 RGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNIL  126 (257)
Q Consensus        47 ~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil  126 (257)
                      +.+.++++...++..+..|+||||+.||+|--+|+  +-+.+.+..+..++..|+-||-+||++   +|++||||.+|++
T Consensus       408 kppFL~qlHScFQTmDRLyFVMEyvnGGDLMyhiQ--Q~GkFKEp~AvFYAaEiaigLFFLh~k---gIiYRDLKLDNvm  482 (683)
T KOG0696|consen  408 KPPFLVQLHSCFQTMDRLYFVMEYVNGGDLMYHIQ--QVGKFKEPVAVFYAAEIAIGLFFLHSK---GIIYRDLKLDNVM  482 (683)
T ss_pred             CCchHHHHHHHhhhhhheeeEEEEecCchhhhHHH--HhcccCCchhhhhhHHHHHHhhhhhcC---CeeeeeccccceE
Confidence            56788899999999999999999999999999997  667888899999999999999999999   9999999999999


Q ss_pred             eCCCCceEEeeeccccc---CCCCcccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHH
Q 044568          127 MDEFWTAKILDFGLAKL---PNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIIL  203 (257)
Q Consensus       127 ~~~~~~~kl~dfg~~~~---~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~  203 (257)
                      ++.+|++||+|||+++.   .+.+....+||+.|+|||++...+|+..+|+||||++||||+.|++||+++++.+   ..
T Consensus       483 Ld~eGHiKi~DFGmcKEni~~~~TTkTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFdGeDE~e---lF  559 (683)
T KOG0696|consen  483 LDSEGHIKIADFGMCKENIFDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDE---LF  559 (683)
T ss_pred             eccCCceEeeecccccccccCCcceeeecCCCcccccceEEecccccchhHHHHHHHHHHHHcCCCCCCCCCHHH---HH
Confidence            99999999999999874   2344467799999999999999999999999999999999999999999773222   11


Q ss_pred             HHHHHHhhhhhhhhhhhc-CCCCCHHHHHHHHHHHHHcccCCCCCCC
Q 044568          204 TNWVYKCFINRELNKLVR-GTKVDKKNLENLVKVGLWCVQDEPALRP  249 (257)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~cl~~~p~~RP  249 (257)
                                   +++.+ .-.+|+....+...++...+.+.|.+|.
T Consensus       560 -------------~aI~ehnvsyPKslSkEAv~ickg~ltK~P~kRL  593 (683)
T KOG0696|consen  560 -------------QAIMEHNVSYPKSLSKEAVAICKGLLTKHPGKRL  593 (683)
T ss_pred             -------------HHHHHccCcCcccccHHHHHHHHHHhhcCCcccc
Confidence                         12222 2256677777888888999999999996

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.96  E-value=6.3e-29  Score=227.10  Aligned_cols=240  Identities=18%  Similarity=0.118  Sum_probs=150.3

Q ss_pred             ccccceeeecccCC-----CCCeeeccchhhhHHHHhHhhhccccccccCCceeeecee------eeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSFNAR-----NSPWISRVSWTADIEVLSVAMRGSKCTRIRGGLLLNVPVR------AKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~------~~~~~~~~lV~E~~~   72 (257)
                      +.|+.||+++...+     ..+++|+..-..+.+........    +..+.++..+...      ....+..+|||||++
T Consensus       143 G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~~e~~~~e~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~LV~ey~~  218 (566)
T PLN03225        143 GAFGVVYKASLVNKQSKKEGKYVLKKATEYGAVEIWMNERVR----RACPNSCADFVYGFLEPVSSKKEDEYWLVWRYEG  218 (566)
T ss_pred             CCCeEEEEEEEcCCccccCcEEEEEEecccchhHHHHHHHHH----hhchhhHHHHHHhhhcccccccCCceEEEEEecC
Confidence            67899999998764     66778875532222211100000    1111111111111      345678899999999


Q ss_pred             CCCHHHHHhccCCC------------------CCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCC-CCce
Q 044568           73 NGSLTDIIFCSAER------------------NPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE-FWTA  133 (257)
Q Consensus        73 ~gsL~~~l~~~~~~------------------~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~-~~~~  133 (257)
                      +++|.+++......                  ......+..++.|++.||.|||++   +|+||||||+|||++. ++.+
T Consensus       219 ~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~---gIiHRDLKP~NILl~~~~~~~  295 (566)
T PLN03225        219 ESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHST---GIVHRDVKPQNIIFSEGSGSF  295 (566)
T ss_pred             CCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHC---CEEeCcCCHHHEEEeCCCCcE
Confidence            99999999642100                  011234567999999999999999   9999999999999985 5789


Q ss_pred             EEeeecccccCCCC----cccccCCCCccCcccccCC----------------------CCCccccchhHHHHHHHHHhc
Q 044568          134 KILDFGLAKLPNED----FVIDKRDKGYMAPECYKRT----------------------PISVKADVYGYGIVLLETICC  187 (257)
Q Consensus       134 kl~dfg~~~~~~~~----~~~~~~~~~~~aPE~~~~~----------------------~~~~~~Di~s~G~~l~el~~g  187 (257)
                      ||+|||++......    .....+++.|+|||.+...                      .++.++|||||||++|||+++
T Consensus       296 KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~DVwSlGviL~el~~~  375 (566)
T PLN03225        296 KIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSAGLIFLQMAFP  375 (566)
T ss_pred             EEEeCCCccccccccccCCcccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCCcccHHHHHHHHHHHhC
Confidence            99999998743221    1344678899999965422                      133466999999999999997


Q ss_pred             CCCCCcCCCChhhHHHHHHHHH-hhhhhhhhhhhcCC---------CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          188 RKNMEIDASKPEEIILTNWVYK-CFINRELNKLVRGT---------KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       188 ~~pf~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ..|++..     .......... ......+.....+.         ...+......++|+.+||+.||++|| ++|+++
T Consensus       376 ~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~dLi~~mL~~dP~kR~ta~e~L~  449 (566)
T PLN03225        376 NLRSDSN-----LIQFNRQLKRNDYDLVAWRKLVEPRASPDLRRGFEVLDLDGGAGWELLKSMMRFKGRQRISAKAALA  449 (566)
T ss_pred             cCCCchH-----HHHHHHHHHhcCCcHHHHHHhhccccchhhhhhhhhccccchHHHHHHHHHccCCcccCCCHHHHhC
Confidence            7765422     1111100000 00001111111111         11111234567899999999999999 999975

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=2.8e-30  Score=222.02  Aligned_cols=189  Identities=17%  Similarity=0.142  Sum_probs=164.1

Q ss_pred             cccccCCceeeeceeeeecCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCC
Q 044568           43 CTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKP  122 (257)
Q Consensus        43 ~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~  122 (257)
                      +-..+.+.||+++-.+.+....|+.||-|-||.|..+++  ..+.+...+++.++..+++|++|||++   +|++|||||
T Consensus       474 m~~~~s~fIvrLYrTfrd~kyvYmLmEaClGGElWTiLr--dRg~Fdd~tarF~~acv~EAfeYLH~k---~iIYRDLKP  548 (732)
T KOG0614|consen  474 MMECRSDFIVRLYRTFRDSKYVYMLMEACLGGELWTILR--DRGSFDDYTARFYVACVLEAFEYLHRK---GIIYRDLKP  548 (732)
T ss_pred             HHhcCchHHHHHHHHhccchhhhhhHHhhcCchhhhhhh--hcCCcccchhhhhHHHHHHHHHHHHhc---CceeccCCh
Confidence            336678999999999999999999999999999999998  567899999999999999999999999   999999999


Q ss_pred             CceeeCCCCceEEeeecccccCCCC--cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhh
Q 044568          123 QNILMDEFWTAKILDFGLAKLPNED--FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEE  200 (257)
Q Consensus       123 ~nil~~~~~~~kl~dfg~~~~~~~~--~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~  200 (257)
                      +|++++.+|.+||.|||+++.....  ....+||+.|.|||++.+...+.++|.||+|+++||+++|++||.+.++-   
T Consensus       549 ENllLd~~Gy~KLVDFGFAKki~~g~KTwTFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs~~dpm---  625 (732)
T KOG0614|consen  549 ENLLLDNRGYLKLVDFGFAKKIGSGRKTWTFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFSGVDPM---  625 (732)
T ss_pred             hheeeccCCceEEeehhhHHHhccCCceeeecCCcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCCCCchH---
Confidence            9999999999999999999975543  35668999999999999999999999999999999999999999866321   


Q ss_pred             HHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC
Q 044568          201 IILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP  249 (257)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP  249 (257)
                                ..-..+..-++-..+|....++..+|+++....+|.+|.
T Consensus       626 ----------ktYn~ILkGid~i~~Pr~I~k~a~~Lik~LCr~~P~ERL  664 (732)
T KOG0614|consen  626 ----------KTYNLILKGIDKIEFPRRITKTATDLIKKLCRDNPTERL  664 (732)
T ss_pred             ----------HHHHHHHhhhhhhhcccccchhHHHHHHHHHhcCcHhhh
Confidence                      111223334444467777888889999999999999996

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=3.3e-29  Score=231.82  Aligned_cols=145  Identities=17%  Similarity=0.184  Sum_probs=131.8

Q ss_pred             cccCCceeeeceeeeecCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCc
Q 044568           45 RIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQN  124 (257)
Q Consensus        45 ~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~n  124 (257)
                      ....+.|+++.-.+++.+..|+|||||+||+|...+.+. + .+|++.++.|+..++.||.-+|+.   |+|||||||+|
T Consensus       131 ~~ns~Wiv~LhyAFQD~~~LYlVMdY~pGGDlltLlSk~-~-~~pE~~ArFY~aEiVlAldslH~m---gyVHRDiKPDN  205 (1317)
T KOG0612|consen  131 FGNSEWIVQLHYAFQDERYLYLVMDYMPGGDLLTLLSKF-D-RLPEDWARFYTAEIVLALDSLHSM---GYVHRDIKPDN  205 (1317)
T ss_pred             cCCcHHHHHHHHHhcCccceEEEEecccCchHHHHHhhc-C-CChHHHHHHHHHHHHHHHHHHHhc---cceeccCCcce
Confidence            555788999999999999999999999999999999852 3 899999999999999999999999   99999999999


Q ss_pred             eeeCCCCceEEeeecccccCCCCc----ccccCCCCccCccccc----C-CCCCccccchhHHHHHHHHHhcCCCCCcC
Q 044568          125 ILMDEFWTAKILDFGLAKLPNEDF----VIDKRDKGYMAPECYK----R-TPISVKADVYGYGIVLLETICCRKNMEID  194 (257)
Q Consensus       125 il~~~~~~~kl~dfg~~~~~~~~~----~~~~~~~~~~aPE~~~----~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~  194 (257)
                      ||+|..|++||+|||.+-.+..++    ....|||-|.+||++.    + +.|+...|+||+|+++|||++|.+||..+
T Consensus       206 vLld~~GHikLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFYad  284 (1317)
T KOG0612|consen  206 VLLDKSGHIKLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFYAD  284 (1317)
T ss_pred             eEecccCcEeeccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcchHH
Confidence            999999999999999887665443    5668999999999996    2 56899999999999999999999999855

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.96  E-value=5.9e-30  Score=221.07  Aligned_cols=224  Identities=15%  Similarity=0.240  Sum_probs=178.4

Q ss_pred             cccccceeeecccCC-CCCeeeccc---h--------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            3 CTKLSNFYRSSFNAR-NSPWISRVS---W--------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         3 ~~~~~~~y~~~~~~~-~~~~i~~~~---~--------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +++|+.||.|+...+ ..++||.++   |        .+|+..+.         .+.||-|+++...+...+..+.|||-
T Consensus       574 SGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq---------~l~HPGiV~le~M~ET~ervFVVMEK  644 (888)
T KOG4236|consen  574 SGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQ---------NLHHPGIVNLECMFETPERVFVVMEK  644 (888)
T ss_pred             CCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHH---------hcCCCCeeEEEEeecCCceEEEEehh
Confidence            679999999997654 555665433   3        45555555         88999999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCC---CCceEEeeecccccCCCC
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE---FWTAKILDFGLAKLPNED  147 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~---~~~~kl~dfg~~~~~~~~  147 (257)
                      +. |+..++|-.++.++|++.....+..||+.||.|||.+   +|+|+||||+|+|+..   -..+||+|||++++++..
T Consensus       645 l~-GDMLEMILSsEkgRL~er~TkFlvtQIL~ALr~LH~k---nIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEk  720 (888)
T KOG4236|consen  645 LH-GDMLEMILSSEKGRLPERITKFLVTQILVALRYLHFK---NIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEK  720 (888)
T ss_pred             hc-chHHHHHHHhhcccchHHHHHHHHHHHHHHHHHhhhc---ceeeccCCchheeeccCCCCCceeeccccceeecchh
Confidence            95 5777776666889999999999999999999999999   9999999999999964   347899999999987755


Q ss_pred             c--ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCC
Q 044568          148 F--VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKV  225 (257)
Q Consensus       148 ~--~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (257)
                      .  .+-.||+.|+|||++.+..|+..-|+||.|+++|--++|..||..+..-.+.+....+             +-+...
T Consensus       721 sFRrsVVGTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFNEdEdIndQIQNAaF-------------MyPp~P  787 (888)
T KOG4236|consen  721 SFRRSVVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNEDEDINDQIQNAAF-------------MYPPNP  787 (888)
T ss_pred             hhhhhhcCCccccCHHHHhhccccccccceeeeEEEEEEecccccCCCccchhHHhhcccc-------------ccCCCc
Confidence            4  5568999999999999999999999999999999999999999754222222222222             222223


Q ss_pred             CHHHHHHHHHHHHHcccCCCCCCC-hHH
Q 044568          226 DKKNLENLVKVGLWCVQDEPALRP-MKC  252 (257)
Q Consensus       226 ~~~~~~~l~~l~~~cl~~~p~~RP-~~e  252 (257)
                      ..+.....+++|...|+..-++|- ...
T Consensus       788 W~eis~~AidlIn~LLqVkm~kRysvdk  815 (888)
T KOG4236|consen  788 WSEISPEAIDLINNLLQVKMRKRYSVDK  815 (888)
T ss_pred             hhhcCHHHHHHHHHHHHHHHHHhcchHh
Confidence            344556778888888888888887 543

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.96  E-value=1.2e-28  Score=205.46  Aligned_cols=201  Identities=18%  Similarity=0.180  Sum_probs=158.5

Q ss_pred             eeeeceeeeecCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeC--
Q 044568           51 LLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD--  128 (257)
Q Consensus        51 i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~--  128 (257)
                      .++..+++...++.|||+|.+ |-|+.++|...+-..++...++.++.|+++++.+||+.   +++|.||||+|||+.  
T Consensus       153 cv~m~~wFdyrghiCivfell-G~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh~~---kl~HTDLKPENILfvss  228 (415)
T KOG0671|consen  153 CVQMRDWFDYRGHICIVFELL-GLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLHDL---KLTHTDLKPENILFVSS  228 (415)
T ss_pred             EEeeehhhhccCceEEEEecc-ChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHHhc---ceeecCCChheEEEecc
Confidence            356778899999999999999 45999999876677899999999999999999999999   999999999999984  


Q ss_pred             ------------------CCCceEEeeecccccCCCCcccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCC
Q 044568          129 ------------------EFWTAKILDFGLAKLPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKN  190 (257)
Q Consensus       129 ------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~p  190 (257)
                                        .+..++++|||.+............|..|.|||++.+-.++..+||||+||+|.|+.+|...
T Consensus       229 ~~~~~~~~k~~~~~~r~~ks~~I~vIDFGsAtf~~e~hs~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~L  308 (415)
T KOG0671|consen  229 EYFKTYNPKKKVCFIRPLKSTAIKVIDFGSATFDHEHHSTIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETL  308 (415)
T ss_pred             ceEEEeccCCccceeccCCCcceEEEecCCcceeccCcceeeeccccCCchheeccCcCCccCceeeeeEEEEeecccee
Confidence                              23468999999998877777888899999999999999999999999999999999999999


Q ss_pred             CCcCCCChhhHHHHHHH-------------HHhhhhhh------------------hhhhhcCCCCCHHHHHHHHHHHHH
Q 044568          191 MEIDASKPEEIILTNWV-------------YKCFINRE------------------LNKLVRGTKVDKKNLENLVKVGLW  239 (257)
Q Consensus       191 f~~~~~~~~~~~~~~~~-------------~~~~~~~~------------------~~~~~~~~~~~~~~~~~l~~l~~~  239 (257)
                      |+.....+.........             .+.+....                  ...+-.-....+.....|.+|+.+
T Consensus       309 FqtHen~EHLaMMerIlGp~P~~mi~r~~~~Kyf~~~rldw~e~~~~~~~k~v~~~ckpl~~~~~~~d~e~~~LfDLl~~  388 (415)
T KOG0671|consen  309 FQTHENLEHLAMMERILGPIPSRMIKKTRKEKYFRRGRLDWPEVSSKGKSKYVFEPCKPLKKYMLQDDLEHVQLFDLLRR  388 (415)
T ss_pred             cccCCcHHHHHHHHHhhCCCcHHHhhhhhhHhhhhcccccCccccccccchhhhcCCccHHHHhccCcHHHhHHHHHHHH
Confidence            98775333211111110             00000000                  000001113345566789999999


Q ss_pred             cccCCCCCCC-hHHHHH
Q 044568          240 CVQDEPALRP-MKCAVM  255 (257)
Q Consensus       240 cl~~~p~~RP-~~ei~~  255 (257)
                      +|.+||.+|+ ++|++.
T Consensus       389 mL~fDP~~RiTl~EAL~  405 (415)
T KOG0671|consen  389 MLEFDPARRITLREALS  405 (415)
T ss_pred             HHccCccccccHHHHhc
Confidence            9999999999 999874

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.96  E-value=4.1e-28  Score=190.34  Aligned_cols=161  Identities=20%  Similarity=0.185  Sum_probs=122.6

Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcccccC
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR  153 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~  153 (257)
                      |||.+++.. ....+++.++..++.|++.||.|||++   +      ||+||+++.++.+++  ||.+......  ...+
T Consensus         1 GsL~~~l~~-~~~~l~~~~~~~i~~qi~~~L~~lH~~---~------kp~Nil~~~~~~~~~--fG~~~~~~~~--~~~g   66 (176)
T smart00750        1 VSLADILEV-RGRPLNEEEIWAVCLQCLRALRELHRQ---A------KSGNILLTWDGLLKL--DGSVAFKTPE--QSRV   66 (176)
T ss_pred             CcHHHHHHH-hCCCCCHHHHHHHHHHHHHHHHHHHhc---C------CcccEeEcCccceee--ccceEeeccc--cCCC
Confidence            799999975 456799999999999999999999999   6      999999999999998  9988754432  2367


Q ss_pred             CCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcC-CCCCHHHHH-
Q 044568          154 DKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRG-TKVDKKNLE-  231 (257)
Q Consensus       154 ~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-  231 (257)
                      ++.|+|||.+.+..++.++|||||||++|||++|+.||........  ....+...      ....... ...+..... 
T Consensus        67 ~~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~~~~--~~~~~~~~------~~~~~~~~~~~~~~~~~~  138 (176)
T smart00750       67 DPYFMAPEVIQGQSYTEKADIYSLGITLYEALDYELPYNEERELSA--ILEILLNG------MPADDPRDRSNLESVSAA  138 (176)
T ss_pred             cccccChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCccccchhcH--HHHHHHHH------hccCCccccccHHHHHhh
Confidence            8999999999999999999999999999999999999965422111  11111100      0000000 011222223 


Q ss_pred             -HHHHHHHHcccCCCCCCC-hHHHHHh
Q 044568          232 -NLVKVGLWCVQDEPALRP-MKCAVMM  256 (257)
Q Consensus       232 -~l~~l~~~cl~~~p~~RP-~~ei~~~  256 (257)
                       .+.+++.+||+.+|.+|| +.|+++.
T Consensus       139 ~~~~~~i~~cl~~~p~~Rp~~~~ll~~  165 (176)
T smart00750      139 RSFADFMRVCASRLPQRREAANHYLAH  165 (176)
T ss_pred             hhHHHHHHHHHhcccccccCHHHHHHH
Confidence             699999999999999999 9999864

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=3.2e-29  Score=199.16  Aligned_cols=237  Identities=16%  Similarity=0.218  Sum_probs=170.0

Q ss_pred             cccceeeecccCCCCC-eeeccchh-----------hhHHHHhHhhhccccccccCCceeeeceeeeec--------Cce
Q 044568            5 KLSNFYRSSFNARNSP-WISRVSWT-----------ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT--------SVS   64 (257)
Q Consensus         5 ~~~~~y~~~~~~~~~~-~i~~~~~~-----------~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~--------~~~   64 (257)
                      -|..|+++...+++.- +++.+-+.           ++++++.         .+.|+|++++..++...        ...
T Consensus        29 tfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~---------~lkHenv~nliEic~tk~Tp~~r~r~t~   99 (376)
T KOG0669|consen   29 TFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQ---------LLKHENVVNLIEICRTKATPTNRDRATF   99 (376)
T ss_pred             hHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHH---------HhcchhHHHHHHHHhhccCCccccccee
Confidence            4566888876665554 66554432           3444444         77899999998877642        358


Q ss_pred             eEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccC
Q 044568           65 GKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLP  144 (257)
Q Consensus        65 ~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~  144 (257)
                      ||||.+|++ +|..++.+ ....++..+..+++.++.+||.|+|..   .|+|||+|+.|+|++.++.+||+|||+++..
T Consensus       100 ylVf~~ceh-DLaGlLsn-~~vr~sls~Ikk~Mk~Lm~GL~~iHr~---kilHRDmKaaNvLIt~dgilklADFGlar~f  174 (376)
T KOG0669|consen  100 YLVFDFCEH-DLAGLLSN-RKVRFSLSEIKKVMKGLMNGLYYIHRN---KILHRDMKAANVLITKDGILKLADFGLARAF  174 (376)
T ss_pred             eeeHHHhhh-hHHHHhcC-ccccccHHHHHHHHHHHHHHHHHHHHh---hHHhhcccHhhEEEcCCceEEeeccccccce
Confidence            999999987 99999975 557899999999999999999999999   9999999999999999999999999999754


Q ss_pred             CCCc-------ccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHH-------HHH
Q 044568          145 NEDF-------VIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNW-------VYK  209 (257)
Q Consensus       145 ~~~~-------~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~-------~~~  209 (257)
                      ....       +...-|.-|++||.+.+. .|++..|+|.-||++.||++|++.+++..+...-..+...       .|+
T Consensus       175 s~~~n~~kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeMwtrspimqgnteqqql~~Is~LcGs~tkevWP  254 (376)
T KOG0669|consen  175 STSKNVVKPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWTRSPIMQGNTEQQQLHLISQLCGSITKEVWP  254 (376)
T ss_pred             ecccccCCCCcccceeeeecCCHHHhhcccccCCcchhHhHHHHHHHHHccCccccCChHHHHHHHHHHHhccCCcccCC
Confidence            4322       233346679999999875 5899999999999999999999999876433321111111       011


Q ss_pred             h------hhhhhhhhhhcCC-CCCHH------HHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          210 C------FINRELNKLVRGT-KVDKK------NLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       210 ~------~~~~~~~~~~~~~-~~~~~------~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .      +..-+...+-.+. .--++      ......+|+..++.+||.+|| +.+++.
T Consensus       255 ~~d~lpL~~sie~ePl~~~~~rkv~n~~kp~~kd~~a~dLle~ll~~DP~kR~~ad~aln  314 (376)
T KOG0669|consen  255 NVDNLPLYQSIELEPLPKGQKRKVKNRLKPYVKDDEALDLLEKLLKLDPTKRIDADQALN  314 (376)
T ss_pred             CcccchHHHhccCCCCCcchhhhhhhhcccccCChhHHHHHHHHhccCcccCcchHhhhc
Confidence            1      1111111000000 00000      113667889999999999999 988764

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.95  E-value=6.5e-29  Score=224.01  Aligned_cols=222  Identities=21%  Similarity=0.241  Sum_probs=167.8

Q ss_pred             cceeeecccCCCCCeeeccc-----h-hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHHH
Q 044568            7 SNFYRSSFNARNSPWISRVS-----W-TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDII   80 (257)
Q Consensus         7 ~~~y~~~~~~~~~~~i~~~~-----~-~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l   80 (257)
                      .+||+|.+..+ .+++|++-     | ++|++.+.        ..-.|+|+|++.+.-++..+.||+.|+|.. ||.+++
T Consensus       524 t~Vf~G~ye~R-~VAVKrll~e~~~~A~rEi~lL~--------eSD~H~NviRyyc~E~d~qF~YIalELC~~-sL~dli  593 (903)
T KOG1027|consen  524 TVVFRGVYEGR-EVAVKRLLEEFFDFAQREIQLLQ--------ESDEHPNVIRYYCSEQDRQFLYIALELCAC-SLQDLI  593 (903)
T ss_pred             cEEEEEeeCCc-eehHHHHhhHhHHHHHHHHHHHH--------hccCCCceEEEEeeccCCceEEEEehHhhh-hHHHHH
Confidence            57999999877 78888754     1 45555444        144699999999999999999999999975 999999


Q ss_pred             hcc-CCCCC-CHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCC---C--CceEEeeecccccCCCCc-----
Q 044568           81 FCS-AERNP-YWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE---F--WTAKILDFGLAKLPNEDF-----  148 (257)
Q Consensus        81 ~~~-~~~~l-~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~---~--~~~kl~dfg~~~~~~~~~-----  148 (257)
                      ..+ ....+ .......+..|+++|+++||+-   +|+||||||.|||++.   +  ..++|+|||+++......     
T Consensus       594 e~~~~d~~~~~~i~~~~~l~q~~~GlaHLHsl---~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~~sS~~r  670 (903)
T KOG1027|consen  594 ESSGLDVEMQSDIDPISVLSQIASGLAHLHSL---KIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAGGKSSFSR  670 (903)
T ss_pred             hccccchhhcccccHHHHHHHHHHHHHHHHhc---ccccccCCCceEEEEccCCCcceeEEecccccccccCCCcchhhc
Confidence            753 11111 1145678899999999999998   9999999999999976   2  468999999998754333     


Q ss_pred             -ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhc-CCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCC
Q 044568          149 -VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICC-RKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVD  226 (257)
Q Consensus       149 -~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g-~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (257)
                       ....||-+|.|||++....-+.++||+|+||++|+.++| .+||.....++.++...+        ..+..+ .  . .
T Consensus       671 ~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~HpFGd~~~R~~NIl~~~--------~~L~~L-~--~-~  738 (903)
T KOG1027|consen  671 LSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHPFGDSLERQANILTGN--------YTLVHL-E--P-L  738 (903)
T ss_pred             ccCCCCcccccCHHHHhccccCcccchhhcCceEEEEecCCccCCCchHHhhhhhhcCc--------cceeee-c--c-C
Confidence             345778889999999988878899999999999999995 999986643333222111        001111 1  1 1


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          227 KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       227 ~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .++  +..+||.+|++.+|..|| +.+|+.
T Consensus       739 ~d~--eA~dLI~~ml~~dP~~RPsa~~VL~  766 (903)
T KOG1027|consen  739 PDC--EAKDLISRMLNPDPQLRPSATDVLN  766 (903)
T ss_pred             chH--HHHHHHHHhcCCCcccCCCHHHHhC
Confidence            111  678899999999999999 999874

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.95  E-value=1.2e-27  Score=216.93  Aligned_cols=224  Identities=17%  Similarity=0.149  Sum_probs=175.6

Q ss_pred             ccceeeecccCCCCCe-eec--cc--hhhhHHHHhHhhhccccccccCCceeeeceeeee-----cCceeEEEeecCCCC
Q 044568            6 LSNFYRSSFNARNSPW-ISR--VS--WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL-----TSVSGKIERPVRNGS   75 (257)
Q Consensus         6 ~~~~y~~~~~~~~~~~-i~~--~~--~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~-----~~~~~lV~E~~~~gs   75 (257)
                      .+-||+++.....+-+ +|-  ..  ...|+|.-.--+..    ...|+|++.+.+++..     +++.+||||||.+||
T Consensus        32 ygkv~k~k~~~~~~~aa~kI~~~~~d~deEiE~eynil~~----~~~hpnv~~fyg~~~k~~~~~~DqLWLVMEfC~gGS  107 (953)
T KOG0587|consen   32 YGKVYKGRHVKTGQLAAIKIMDPTEDEEEEIELEYNMLKK----YSHHPNVATFYGAFIKKDPGNGDQLWLVMEFCGGGS  107 (953)
T ss_pred             ceeEEEEeeeecCceeeeEeecCCccccHHHHHHHHHHHh----ccCCCCcceEEEEEEEecCCCCCeEEEEeeccCCcc
Confidence            4568888865555543 332  22  34444433322222    4469999999998874     579999999999999


Q ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---ccccc
Q 044568           76 LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---FVIDK  152 (257)
Q Consensus        76 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~~~~~  152 (257)
                      ..|++.+..+..+.|....-|++.++.|+.+||.+   .++|||+|-.|||+..++.+||.|||++.-...+   .....
T Consensus       108 VTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH~n---kviHRDikG~NiLLT~e~~VKLvDFGvSaQldsT~grRnT~i  184 (953)
T KOG0587|consen  108 VTDLVKNTKGNRLKEEWIAYILREILRGLAHLHNN---KVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDSTVGRRNTFI  184 (953)
T ss_pred             HHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhhc---ceeeecccCceEEEeccCcEEEeeeeeeeeeecccccccCcC
Confidence            99999987788899999999999999999999999   9999999999999999999999999997644332   35668


Q ss_pred             CCCCccCcccccCC-----CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc---CC-
Q 044568          153 RDKGYMAPECYKRT-----PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR---GT-  223 (257)
Q Consensus       153 ~~~~~~aPE~~~~~-----~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-  223 (257)
                      ||+.|+|||++...     .|+..+|+||+|++..||.-|.+|+...-+                   ...++.   .. 
T Consensus       185 GtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~PPl~DmHP-------------------mraLF~IpRNPP  245 (953)
T KOG0587|consen  185 GTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAPPLCDMHP-------------------MRALFLIPRNPP  245 (953)
T ss_pred             CCcccccceeeecccCCCCCcccccchhhccceeehhcCCCCCccCcch-------------------hhhhccCCCCCC
Confidence            99999999998643     367899999999999999999999864411                   111111   11 


Q ss_pred             ---CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          224 ---KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       224 ---~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                         .-+....+.+.++|..||.+|-++|| +.++++
T Consensus       246 PkLkrp~kWs~~FndFIs~cL~Kd~e~RP~~~~ll~  281 (953)
T KOG0587|consen  246 PKLKRPKKWSKKFNDFISTCLVKDYEQRPSTEELLK  281 (953)
T ss_pred             ccccchhhHHHHHHHHHHHHHhhccccCcchhhhcc
Confidence               22667788999999999999999999 998875

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=6.3e-28  Score=212.27  Aligned_cols=170  Identities=19%  Similarity=0.191  Sum_probs=146.1

Q ss_pred             HHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCC
Q 044568           33 VLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECE  112 (257)
Q Consensus        33 ~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~  112 (257)
                      +..+.-..+.+.....+.+|++...+++.+..|+||+|.+||++-.+|.  ..+.|++..++.|+..+..|+++.|+.  
T Consensus       673 vaHVKAERDILAEADn~WVVrLyySFQDkdnLYFVMdYIPGGDmMSLLI--rmgIFeE~LARFYIAEltcAiesVHkm--  748 (1034)
T KOG0608|consen  673 VAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMDYIPGGDMMSLLI--RMGIFEEDLARFYIAELTCAIESVHKM--  748 (1034)
T ss_pred             hhhhhhhhhhHhhcCCcceEEEEEEeccCCceEEEEeccCCccHHHHHH--HhccCHHHHHHHHHHHHHHHHHHHHhc--
Confidence            3444444446668889999999999999999999999999999999987  678899999999999999999999999  


Q ss_pred             CCeeeccCCCCceeeCCCCceEEeeecccccCCCCc--------------------------------------------
Q 044568          113 PPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF--------------------------------------------  148 (257)
Q Consensus       113 ~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~--------------------------------------------  148 (257)
                       |++||||||+|||||.+|++||.|||++.-+.-+.                                            
T Consensus       749 -GFIHRDiKPDNILIDrdGHIKLTDFGLCTGfRWTHdskYYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~  827 (1034)
T KOG0608|consen  749 -GFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRIL  827 (1034)
T ss_pred             -cceecccCccceEEccCCceeeeeccccccceeccccccccCCCccccccCCCchhhccccccchHHHHHHHhhhhhhh
Confidence             99999999999999999999999999975211000                                            


Q ss_pred             -ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHH
Q 044568          149 -VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWV  207 (257)
Q Consensus       149 -~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~  207 (257)
                       ....||+.|+|||++....|+...|+||.|++||||+.|+.||-.+.+......+.+|.
T Consensus       828 ahslvgt~nyiapevl~r~g~~q~cdwws~gvil~em~~g~~pf~~~tp~~tq~kv~nw~  887 (1034)
T KOG0608|consen  828 AHSLVGTPNYIAPEVLARTGYTQLCDWWSVGVILYEMLVGQPPFLADTPGETQYKVINWR  887 (1034)
T ss_pred             hhhhcCCCcccChHHhcccCccccchhhHhhHHHHHHhhCCCCccCCCCCcceeeeeehh
Confidence             24478899999999999999999999999999999999999998776665555555654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.95  E-value=3.1e-28  Score=231.75  Aligned_cols=173  Identities=17%  Similarity=0.232  Sum_probs=125.4

Q ss_pred             CceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCC-----------
Q 044568           62 SVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF-----------  130 (257)
Q Consensus        62 ~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~-----------  130 (257)
                      +..+.++|++ +++|.++|.. ....+++.+++.++.||+.||.|||++   +|+||||||+|||++..           
T Consensus        53 ~~~~~~~e~~-~~~L~~~l~~-~~~~~~~~~~~~i~~qi~~al~~lH~~---gIvHrDlKP~NiLl~~~~~~k~~d~~~~  127 (793)
T PLN00181         53 DSIVRALECE-DVSLRQWLDN-PDRSVDAFECFHVFRQIVEIVNAAHSQ---GIVVHNVRPSCFVMSSFNHVSFIESASC  127 (793)
T ss_pred             chhhhhhccC-CccHHHHHhc-ccccccHHHHHHHHHHHHHHHHHHHhC---CeeeccCCchhEEEcccCcEEEeecccc
Confidence            3456778987 5699999974 456699999999999999999999999   99999999999999654           


Q ss_pred             --------CceEEeeecccccCCCC-------------------cccccCCCCccCcccccCCCCCccccchhHHHHHHH
Q 044568          131 --------WTAKILDFGLAKLPNED-------------------FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLE  183 (257)
Q Consensus       131 --------~~~kl~dfg~~~~~~~~-------------------~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~e  183 (257)
                              +.+|++|||+++.....                   .....+|+.|+|||.+.+..++.++|||||||++||
T Consensus       128 ~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~sDVwSlGviL~E  207 (793)
T PLN00181        128 SDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMSWYTSPEEDNGSSSNCASDVYRLGVLLFE  207 (793)
T ss_pred             CcccccccCcccccccccccccccccccchhhhhccccCCCcccccccCCCcceEChhhhccCCCCchhhhhhHHHHHHH
Confidence                    44556666665431100                   011246777999999999899999999999999999


Q ss_pred             HHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          184 TICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       184 l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      |++|..|+....     .....+..         ...++. . .........++.+||+.+|.+|| +.|+++
T Consensus       208 Ll~~~~~~~~~~-----~~~~~~~~---------~~~~~~-~-~~~~~~~~~~~~~~L~~~P~~Rps~~eil~  264 (793)
T PLN00181        208 LFCPVSSREEKS-----RTMSSLRH---------RVLPPQ-I-LLNWPKEASFCLWLLHPEPSCRPSMSELLQ  264 (793)
T ss_pred             HhhCCCchhhHH-----HHHHHHHH---------hhcChh-h-hhcCHHHHHHHHHhCCCChhhCcChHHHhh
Confidence            999888874220     01111100         011110 0 11123456788899999999999 999975

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.95  E-value=3e-29  Score=200.53  Aligned_cols=240  Identities=18%  Similarity=0.146  Sum_probs=170.5

Q ss_pred             ccccceeeecccCCCCC-eeeccchhhh---HHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHH
Q 044568            4 TKLSNFYRSSFNARNSP-WISRVSWTAD---IEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDI   79 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~-~i~~~~~~~~---~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~   79 (257)
                      +.|+.|+|..+...+.. ++|+++..++   .+-+-..... -...-.-+|||++.|+.-.++.++|.||+|. .||+.+
T Consensus        75 G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~-~mks~~cp~IVkfyGa~F~EGdcWiCMELMd-~SlDkl  152 (361)
T KOG1006|consen   75 GAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDT-VMKSSNCPNIVKFYGALFSEGDCWICMELMD-ISLDKL  152 (361)
T ss_pred             CcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHH-HHhhcCCcHHHHHhhhhhcCCceeeeHHHHh-hhHHHH
Confidence            45778888887666555 5787765332   2211111111 2224456899999999999999999999995 476655


Q ss_pred             H---hccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC--cccccCC
Q 044568           80 I---FCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED--FVIDKRD  154 (257)
Q Consensus        80 l---~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~--~~~~~~~  154 (257)
                      .   .......+++...-++..-.+.||.||-+.  ..|+|||+||+|||++..|.+||+|||.+-.....  .+...|.
T Consensus       153 Yk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~--lkiIHRDvKPSNILldr~G~vKLCDFGIcGqLv~SiAkT~daGC  230 (361)
T KOG1006|consen  153 YKRVYSVQKSRIPENILGHITVATVDALDYLKEE--LKIIHRDVKPSNILLDRHGDVKLCDFGICGQLVDSIAKTVDAGC  230 (361)
T ss_pred             HHHHHHHHhccCcHhhhhheeeeehhHHHHHHHH--hhhhhccCChhheEEecCCCEeeecccchHhHHHHHHhhhccCC
Confidence            3   344677899988889999999999999886  49999999999999999999999999987532221  2445677


Q ss_pred             CCccCcccccCC--CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHH
Q 044568          155 KGYMAPECYKRT--PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLEN  232 (257)
Q Consensus       155 ~~~~aPE~~~~~--~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (257)
                      .+|+|||.+...  .|+.+||+||+|+++||+.||+.|+..-.+.-+  .++.     ...+....+.. .....+....
T Consensus       231 rpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~w~svfe--ql~~-----Vv~gdpp~l~~-~~~~~~~s~~  302 (361)
T KOG1006|consen  231 RPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYRKWDSVFE--QLCQ-----VVIGDPPILLF-DKECVHYSFS  302 (361)
T ss_pred             ccccChhccCCccCCcchhhhhhhhcceEeeeecCCCCcchHHHHHH--HHHH-----HHcCCCCeecC-cccccccCHH
Confidence            889999998743  489999999999999999999999963211000  0000     00011100111 1112224567


Q ss_pred             HHHHHHHcccCCCCCCC-hHHHHH
Q 044568          233 LVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       233 l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +.+++..|+-+|-..|| ..++.+
T Consensus       303 ~~~fintCl~Kd~~~Rpky~~Lk~  326 (361)
T KOG1006|consen  303 MVRFINTCLIKDRSDRPKYDDLKK  326 (361)
T ss_pred             HHHHHHHHhhcccccCcchhhhhc
Confidence            89999999999999999 998865

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=8.4e-28  Score=198.13  Aligned_cols=193  Identities=16%  Similarity=0.250  Sum_probs=157.4

Q ss_pred             cccCCceeeeceeeeecCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCc
Q 044568           45 RIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQN  124 (257)
Q Consensus        45 ~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~n  124 (257)
                      .-.||.++-+...++.++..++|.||.+||+|--++.  ..+.+|++-++.+...|+.||.|||++   ||++||+|.+|
T Consensus       307 asn~pflvglhscfqtesrlffvieyv~ggdlmfhmq--rqrklpeeharfys~ei~lal~flh~r---giiyrdlkldn  381 (593)
T KOG0695|consen  307 ASNNPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQ--RQRKLPEEHARFYSAEICLALNFLHER---GIIYRDLKLDN  381 (593)
T ss_pred             ccCCCeEEehhhhhcccceEEEEEEEecCcceeeehh--hhhcCcHHHhhhhhHHHHHHHHHHhhc---Ceeeeeccccc
Confidence            4468999999999999999999999999999988887  667899999999999999999999999   99999999999


Q ss_pred             eeeCCCCceEEeeeccccc---CCCCcccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhH
Q 044568          125 ILMDEFWTAKILDFGLAKL---PNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEI  201 (257)
Q Consensus       125 il~~~~~~~kl~dfg~~~~---~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~  201 (257)
                      +|++..+++||.|+|+++.   .+......+||+.|.|||++.+..|....|+|++|++++||+.|+.||+--..+..+.
T Consensus       382 vlldaeghikltdygmcke~l~~gd~tstfcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfdivgm~n~d~  461 (593)
T KOG0695|consen  382 VLLDAEGHIKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIVGMDNPDM  461 (593)
T ss_pred             eEEccCCceeecccchhhcCCCCCcccccccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCCCcceecCCCccc
Confidence            9999999999999999874   3444577799999999999999999999999999999999999999998443222211


Q ss_pred             HHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC
Q 044568          202 ILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP  249 (257)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP  249 (257)
                      ....+.++.....++       ..|.........++..-|++||.+|.
T Consensus       462 ntedylfqvilekqi-------riprslsvkas~vlkgflnkdp~erl  502 (593)
T KOG0695|consen  462 NTEDYLFQVILEKQI-------RIPRSLSVKASHVLKGFLNKDPKERL  502 (593)
T ss_pred             chhHHHHHHHhhhcc-------cccceeehhhHHHHHHhhcCCcHHhc
Confidence            222222222222111       23444445566777889999999986

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.95  E-value=1.3e-27  Score=194.98  Aligned_cols=149  Identities=21%  Similarity=0.187  Sum_probs=128.5

Q ss_pred             ccccccCCceeeeceeeee-cCceeEEEeecCCCCHHHHHhcc---CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeee
Q 044568           42 KCTRIRGGLLLNVPVRAKL-TSVSGKIERPVRNGSLTDIIFCS---AERNPYWNQRVRIALDVAKGILYLHDECEPPILH  117 (257)
Q Consensus        42 ~~~~~~h~~i~~~~~~~~~-~~~~~lV~E~~~~gsL~~~l~~~---~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h  117 (257)
                      .|+.+.|+|++.+...+-. +...+|++||.++ +|.++|+-+   ..+.++...++.++.||+.|+.|||++   =++|
T Consensus        80 L~REl~h~nvi~Lv~Vfl~~d~~v~l~fdYAEh-DL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~N---WvlH  155 (438)
T KOG0666|consen   80 LLRELKHPNVISLVKVFLSHDKKVWLLFDYAEH-DLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSN---WVLH  155 (438)
T ss_pred             HHHHhcCCcchhHHHHHhccCceEEEEehhhhh-hHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhh---heee
Confidence            5669999999999998887 7889999999987 999999633   345689999999999999999999999   8999


Q ss_pred             ccCCCCceeeCCC----CceEEeeecccccCCCCcccc------cCCCCccCcccccCCC-CCccccchhHHHHHHHHHh
Q 044568          118 CDIKPQNILMDEF----WTAKILDFGLAKLPNEDFVID------KRDKGYMAPECYKRTP-ISVKADVYGYGIVLLETIC  186 (257)
Q Consensus       118 ~dl~~~nil~~~~----~~~kl~dfg~~~~~~~~~~~~------~~~~~~~aPE~~~~~~-~~~~~Di~s~G~~l~el~~  186 (257)
                      |||||.|||+..+    |.+||+|||+++....+....      .-|.-|.|||.+.+.. |+.+.|+||.||+..||++
T Consensus       156 RDLKPaNIlvmgdgperG~VKIaDlGlaR~~~~plkpl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElLt  235 (438)
T KOG0666|consen  156 RDLKPANILVMGDGPERGRVKIADLGLARLFNNPLKPLASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELLT  235 (438)
T ss_pred             ccCCcceEEEeccCCccCeeEeecccHHHHhhccccccccCCceEEEEEecChHHhcccccccchhhhHHHHHHHHHHHc
Confidence            9999999999877    899999999999766554222      2344499999999865 8999999999999999999


Q ss_pred             cCCCCCcC
Q 044568          187 CRKNMEID  194 (257)
Q Consensus       187 g~~pf~~~  194 (257)
                      -.+.|.+.
T Consensus       236 l~PlF~g~  243 (438)
T KOG0666|consen  236 LEPLFKGR  243 (438)
T ss_pred             cCccccch
Confidence            99888754

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.95  E-value=7.6e-28  Score=196.99  Aligned_cols=212  Identities=17%  Similarity=0.193  Sum_probs=157.1

Q ss_pred             hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHH
Q 044568           27 WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILY  106 (257)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~  106 (257)
                      ..+|++.+.      .|.  .|+||++++.++.+++.+|||||-|.||+|..+|.  +..-+++.++..+..+|++||.|
T Consensus       122 vfREVe~f~------~Cq--gh~nilqLiefFEdd~~FYLVfEKm~GGplLshI~--~~~~F~E~EAs~vvkdia~aLdF  191 (463)
T KOG0607|consen  122 VFREVETFY------QCQ--GHKNILQLIEFFEDDTRFYLVFEKMRGGPLLSHIQ--KRKHFNEREASRVVKDIASALDF  191 (463)
T ss_pred             HHHHHHHHH------Hhc--CCccHHHHHHHhcccceEEEEEecccCchHHHHHH--HhhhccHHHHHHHHHHHHHHHHH
Confidence            345555555      232  49999999999999999999999999999999998  67789999999999999999999


Q ss_pred             HhhCCCCCeeeccCCCCceeeCCCCc---eEEeeecccccCC--C--------CcccccCCCCccCccccc-----CCCC
Q 044568          107 LHDECEPPILHCDIKPQNILMDEFWT---AKILDFGLAKLPN--E--------DFVIDKRDKGYMAPECYK-----RTPI  168 (257)
Q Consensus       107 lh~~~~~~i~h~dl~~~nil~~~~~~---~kl~dfg~~~~~~--~--------~~~~~~~~~~~~aPE~~~-----~~~~  168 (257)
                      ||.+   ||.|||+||+|||-.....   +||+||.+..-+.  .        ......|+..|||||+..     ..-|
T Consensus       192 lH~k---gIAHRDlKPENiLC~~pn~vsPvKiCDfDLgSg~k~~~~~spastP~L~tPvGSAEfMAPEVVd~fv~qA~~Y  268 (463)
T KOG0607|consen  192 LHTK---GIAHRDLKPENILCESPNKVSPVKICDFDLGSGIKLNNDCSPASTPELLTPVGSAEFMAPEVVDVFVDQATFY  268 (463)
T ss_pred             Hhhc---CcccccCCccceeecCCCCcCceeeeccccccccccCCCCCCCCCccccCcccchhhcchhHHhhhccccccc
Confidence            9999   9999999999999986654   6999998765321  1        113446666799999874     2347


Q ss_pred             CccccchhHHHHHHHHHhcCCCCCcCCCCh---hhHHHHHHHHHhhhhhhhhhhhcCC-CCCHHH----HHHHHHHHHHc
Q 044568          169 SVKADVYGYGIVLLETICCRKNMEIDASKP---EEIILTNWVYKCFINRELNKLVRGT-KVDKKN----LENLVKVGLWC  240 (257)
Q Consensus       169 ~~~~Di~s~G~~l~el~~g~~pf~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~l~~l~~~c  240 (257)
                      +.+.|.||+|+++|-|++|.+||.+.-..+   +....++.-...    -...+-++. ++|+++    ..+..+++...
T Consensus       269 DKrCDlwSLGvIlYImLsGYpPFvG~Cg~dCGWdrGe~Cr~CQ~~----LFesIQEGkYeFPdkdWahIS~eakdlisnL  344 (463)
T KOG0607|consen  269 DKRCDLWSLGVILYIMLSGYPPFVGHCGADCGWDRGEVCRVCQNK----LFESIQEGKYEFPDKDWAHISSEAKDLISNL  344 (463)
T ss_pred             cccccHHHHHHHHHHHHhCCCCccCccCCcCCccCCCccHHHHHH----HHHHHhccCCcCChhhhHHhhHHHHHHHHHH
Confidence            899999999999999999999998652221   111111110000    011122222 444443    35677888888


Q ss_pred             ccCCCCCCC-hHHHHH
Q 044568          241 VQDEPALRP-MKCAVM  255 (257)
Q Consensus       241 l~~~p~~RP-~~ei~~  255 (257)
                      +-.|+.+|. +.++++
T Consensus       345 lvrda~~rlsa~~vln  360 (463)
T KOG0607|consen  345 LVRDAKQRLSAAQVLN  360 (463)
T ss_pred             HhccHHhhhhhhhccC
Confidence            999999999 887754

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.94  E-value=2.9e-27  Score=201.01  Aligned_cols=235  Identities=19%  Similarity=0.258  Sum_probs=169.5

Q ss_pred             ccccceeeecccCCCCCe-eecc----chhhhHH--HHhH-hhhccccccccCCceeeeceeeee-cCceeEEEeecCCC
Q 044568            4 TKLSNFYRSSFNARNSPW-ISRV----SWTADIE--VLSV-AMRGSKCTRIRGGLLLNVPVRAKL-TSVSGKIERPVRNG   74 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~-i~~~----~~~~~~~--~~~~-~~~~~~~~~~~h~~i~~~~~~~~~-~~~~~lV~E~~~~g   74 (257)
                      +.||.||++=..+....+ +|--    ++..|-+  +... ...-.....+.|+-||++.+++.. .+.+|-|+|||+|.
T Consensus       474 GGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtdsFCTVLEYceGN  553 (775)
T KOG1151|consen  474 GGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTDSFCTVLEYCEGN  553 (775)
T ss_pred             ccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeeccccceeeeeecCCC
Confidence            578999998755554443 3321    1222221  1110 111112337889999999999985 56788999999999


Q ss_pred             CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCC---CceEEeeecccccCCCCc---
Q 044568           75 SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF---WTAKILDFGLAKLPNEDF---  148 (257)
Q Consensus        75 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~---~~~kl~dfg~~~~~~~~~---  148 (257)
                      +|+-+|.  ..+-+++.+++.|+.||++||.||-+. +++|+|-||||.|||+.+.   |.+||.|||+++.++...   
T Consensus       554 DLDFYLK--QhklmSEKEARSIiMQiVnAL~YLNEi-kpPIIHYDLKPgNILLv~GtacGeIKITDFGLSKIMdddSy~~  630 (775)
T KOG1151|consen  554 DLDFYLK--QHKLMSEKEARSIIMQIVNALKYLNEI-KPPIIHYDLKPGNILLVNGTACGEIKITDFGLSKIMDDDSYNS  630 (775)
T ss_pred             chhHHHH--hhhhhhHHHHHHHHHHHHHHHHHHhcc-CCCeeeeccCCccEEEecCcccceeEeeecchhhhccCCccCc
Confidence            9999998  778899999999999999999999998 8999999999999999654   578999999999876544   


Q ss_pred             -------ccccCCCCccCcccccCC----CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhh
Q 044568          149 -------VIDKRDKGYMAPECYKRT----PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELN  217 (257)
Q Consensus       149 -------~~~~~~~~~~aPE~~~~~----~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (257)
                             ....||.-|++||.+.-+    .++.++||||.|++.|.++.|+.||.......+ +...         .   
T Consensus       631 vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhnqsQQd-ILqe---------N---  697 (775)
T KOG1151|consen  631 VDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHNQSQQD-ILQE---------N---  697 (775)
T ss_pred             ccceeeecccCceeeecCcceeecCCCCCccccceeeEeeehhhhhhhccCCCCCCchhHHH-HHhh---------h---
Confidence                   233566779999998643    368999999999999999999999975522211 1111         1   


Q ss_pred             hhhcCC--CC--CHHHHHHHHHHHHHcccCCCCCCC-hHHHH
Q 044568          218 KLVRGT--KV--DKKNLENLVKVGLWCVQDEPALRP-MKCAV  254 (257)
Q Consensus       218 ~~~~~~--~~--~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~  254 (257)
                      .+++..  .+  -+-...+...+|.+||++.-++|- ..+++
T Consensus       698 TIlkAtEVqFP~KPvVsseAkaFIRRCLaYRKeDR~DV~qLA  739 (775)
T KOG1151|consen  698 TILKATEVQFPPKPVVSSEAKAFIRRCLAYRKEDRIDVQQLA  739 (775)
T ss_pred             chhcceeccCCCCCccCHHHHHHHHHHHHhhhhhhhhHHHHc
Confidence            111111  11  111234567788899999999998 77765

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.94  E-value=5.4e-26  Score=181.15  Aligned_cols=195  Identities=27%  Similarity=0.348  Sum_probs=164.1

Q ss_pred             ccccceeeecccC-CCCCeeeccch----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +.++.+|+++..+ ++..++|....          .++++.+.         ++.|++++++...+...+..++++|+++
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~---------~l~~~~i~~~~~~~~~~~~~~~~~e~~~   74 (215)
T cd00180           4 GGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILK---------KLNHPNIVKLYGVFEDENHLYLVMEYCE   74 (215)
T ss_pred             CCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHH---------hcCCCCeeeEeeeeecCCeEEEEEecCC
Confidence            5678999999876 55566665443          23344444         7788999999999999999999999999


Q ss_pred             CCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCC-CCceEEeeecccccCCCC---c
Q 044568           73 NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE-FWTAKILDFGLAKLPNED---F  148 (257)
Q Consensus        73 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~-~~~~kl~dfg~~~~~~~~---~  148 (257)
                      +++|.+++.. ....+++..+..++.+++.++.+||++   +++|+|++|.||+++. ++.++++|||.+......   .
T Consensus        75 ~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~lh~~---~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~~~  150 (215)
T cd00180          75 GGSLKDLLKE-NEGKLSEDEILRILLQILEGLEYLHSN---GIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKSLL  150 (215)
T ss_pred             CCcHHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcchh
Confidence            9999999974 225689999999999999999999999   9999999999999999 889999999988755443   3


Q ss_pred             ccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCH
Q 044568          149 VIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDK  227 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (257)
                      ....+...|.+||..... ..+.++|+|++|++++++                                           
T Consensus       151 ~~~~~~~~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l-------------------------------------------  187 (215)
T cd00180         151 KTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL-------------------------------------------  187 (215)
T ss_pred             hcccCCCCccChhHhcccCCCCchhhhHHHHHHHHHH-------------------------------------------
Confidence            445567779999998876 778999999999999998                                           


Q ss_pred             HHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          228 KNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       228 ~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                         ..+.+++..|++.+|.+|| +.++++.|
T Consensus       188 ---~~~~~~l~~~l~~~p~~R~~~~~l~~~~  215 (215)
T cd00180         188 ---PELKDLIRKMLQKDPEKRPSAKEILEHL  215 (215)
T ss_pred             ---HHHHHHHHHHhhCCcccCcCHHHHhhCC
Confidence               3577888899999999999 99998754

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.94  E-value=5.6e-26  Score=203.71  Aligned_cols=185  Identities=19%  Similarity=0.154  Sum_probs=129.0

Q ss_pred             cCceeEEEeecCCCCHHHHHhccC----------------------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeec
Q 044568           61 TSVSGKIERPVRNGSLTDIIFCSA----------------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHC  118 (257)
Q Consensus        61 ~~~~~lV~E~~~~gsL~~~l~~~~----------------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~  118 (257)
                      .+..+|||||+++|+|.++++...                      ...+++..+..++.|++.||.|+|++   +++||
T Consensus       257 ~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~~~~~~~~~~~~i~~ql~~aL~~lH~~---~ivHr  333 (507)
T PLN03224        257 KGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMPQDKRDINVIKGVMRQVLTGLRKLHRI---GIVHR  333 (507)
T ss_pred             CCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHHHHHHHHC---CeecC
Confidence            456899999999999999997421                      11245677889999999999999999   99999


Q ss_pred             cCCCCceeeCCCCceEEeeecccccCCCCc----ccccCCCCccCcccccCCCC----------------------Cccc
Q 044568          119 DIKPQNILMDEFWTAKILDFGLAKLPNEDF----VIDKRDKGYMAPECYKRTPI----------------------SVKA  172 (257)
Q Consensus       119 dl~~~nil~~~~~~~kl~dfg~~~~~~~~~----~~~~~~~~~~aPE~~~~~~~----------------------~~~~  172 (257)
                      ||||+||+++.++.+||+|||++.......    .....++.|++||.+.....                      ..+.
T Consensus       334 DLKp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~g~~tp~Y~aPE~l~~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~  413 (507)
T PLN03224        334 DIKPENLLVTVDGQVKIIDFGAAVDMCTGINFNPLYGMLDPRYSPPEELVMPQSCPRAPAPAMAALLSPFAWLYGRPDLF  413 (507)
T ss_pred             CCchHhEEECCCCcEEEEeCcCccccccCCccCccccCCCcceeChhhhcCCCCCCccchhhhhhhhhhhHHhcCCCCcc
Confidence            999999999999999999999986432211    12234678999998764321                      1246


Q ss_pred             cchhHHHHHHHHHhcCC-CCCcCCCChhhH-----HHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCC-
Q 044568          173 DVYGYGIVLLETICCRK-NMEIDASKPEEI-----ILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEP-  245 (257)
Q Consensus       173 Di~s~G~~l~el~~g~~-pf~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p-  245 (257)
                      |+||+||++|+|++|.. ||.....-..+.     ....|..  +...    ..+ ....+......++++.+++..+| 
T Consensus       414 DvwSlGvil~em~~~~l~p~~~~~~f~~~~~~~~~~~~~~r~--~~~~----~~~-~~~~d~~s~~~~dLi~~LL~~~~~  486 (507)
T PLN03224        414 DSYTAGVLLMQMCVPELRPVANIRLFNTELRQYDNDLNRWRM--YKGQ----KYD-FSLLDRNKEAGWDLACKLITKRDQ  486 (507)
T ss_pred             chhhHHHHHHHHHhCCCCCccchhhhhhHHhhccchHHHHHh--hccc----CCC-cccccccChHHHHHHHHHhccCCC
Confidence            99999999999999875 664321110000     1111110  0000    000 01223345788999999999876 


Q ss_pred             --CCCC-hHHHHH
Q 044568          246 --ALRP-MKCAVM  255 (257)
Q Consensus       246 --~~RP-~~ei~~  255 (257)
                        .+|+ ++|+++
T Consensus       487 ~~~~RlSa~eaL~  499 (507)
T PLN03224        487 ANRGRLSVGQALS  499 (507)
T ss_pred             CcccCCCHHHHhC
Confidence              6899 999875

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=3.4e-26  Score=213.40  Aligned_cols=171  Identities=27%  Similarity=0.388  Sum_probs=131.6

Q ss_pred             ceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccc
Q 044568           63 VSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK  142 (257)
Q Consensus        63 ~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~  142 (257)
                      ..||=||||+.-.+.+++++ +...-......+++.+|++||.|+|++   |++||||||.||+++.+..+||+|||++.
T Consensus       670 ~LYIQMEyCE~~ll~~iI~~-N~~~~~~d~~wrLFreIlEGLaYIH~~---giIHRDLKP~NIFLd~~~~VKIGDFGLAt  745 (1351)
T KOG1035|consen  670 ILYIQMEYCEKTLLRDIIRR-NHFNSQRDEAWRLFREILEGLAYIHDQ---GIIHRDLKPRNIFLDSRNSVKIGDFGLAT  745 (1351)
T ss_pred             EEEEEHhhhhhhHHHHHHHh-cccchhhHHHHHHHHHHHHHHHHHHhC---ceeeccCCcceeEEcCCCCeeecccccch
Confidence            35789999999888888864 221114577889999999999999999   99999999999999999999999999986


Q ss_pred             cCC---------------------CCcccccCCCCccCcccccCCC---CCccccchhHHHHHHHHHhcCCCCCcCCCCh
Q 044568          143 LPN---------------------EDFVIDKRDKGYMAPECYKRTP---ISVKADVYGYGIVLLETICCRKNMEIDASKP  198 (257)
Q Consensus       143 ~~~---------------------~~~~~~~~~~~~~aPE~~~~~~---~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~  198 (257)
                      ...                     ...+...||..|+|||.+.+..   |+.|+|+||+|++++||+.   ||....++ 
T Consensus       746 ~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~~~~~~~Yn~KiDmYSLGIVlFEM~y---PF~TsMER-  821 (1351)
T KOG1035|consen  746 DLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLSDTSSNKYNSKIDMYSLGIVLFEMLY---PFGTSMER-  821 (1351)
T ss_pred             hhhhhhhhHhhccCccccccCCCCcccccccceeeeecHHHhcccccccccchhhhHHHHHHHHHHhc---cCCchHHH-
Confidence            510                     1125668888999999998654   9999999999999999995   56533111 


Q ss_pred             hhHHHHHHHHHhhhhhhhhhhhcCC-----CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          199 EEIILTNWVYKCFINRELNKLVRGT-----KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                                    ...+.++-++.     .+..+..+.-.+++.++++.||.+|| +.|+++
T Consensus       822 --------------a~iL~~LR~g~iP~~~~f~~~~~~~e~slI~~Ll~hdP~kRPtA~eLL~  870 (1351)
T KOG1035|consen  822 --------------ASILTNLRKGSIPEPADFFDPEHPEEASLIRWLLSHDPSKRPTATELLN  870 (1351)
T ss_pred             --------------HHHHHhcccCCCCCCcccccccchHHHHHHHHHhcCCCccCCCHHHHhh
Confidence                          01112222221     23444556778999999999999999 999985

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=4.7e-25  Score=189.12  Aligned_cols=119  Identities=20%  Similarity=0.239  Sum_probs=90.2

Q ss_pred             cccceeeecccCCCCC-e---eeccch-----hhhHHHHhHhhhccccccccCCceeeeceeee----ecCceeEEEeec
Q 044568            5 KLSNFYRSSFNARNSP-W---ISRVSW-----TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAK----LTSVSGKIERPV   71 (257)
Q Consensus         5 ~~~~~y~~~~~~~~~~-~---i~~~~~-----~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~----~~~~~~lV~E~~   71 (257)
                      -||.|+.+-.-++... +   +|.++|     ..|++.+...-.+ .-....-.++|+++..|.    ++.+.|||+|++
T Consensus        90 HFSTVWLawDtq~~r~VAlKVvKSAqhYtEaAlDEIklL~~v~~~-Dp~~~~~~~VV~LlD~FkhsGpNG~HVCMVfEvL  168 (590)
T KOG1290|consen   90 HFSTVWLAWDTQNKRYVALKVVKSAQHYTEAALDEIKLLQQVREG-DPNDPGKKCVVQLLDHFKHSGPNGQHVCMVFEVL  168 (590)
T ss_pred             ccceeEEEeeccCCeEEEEEEEehhhHHHHHHHHHHHHHHHHHhc-CCCCCCCceeeeeeccceecCCCCcEEEEEehhh
Confidence            4666666665544433 2   345555     3455555533333 122344567888888776    466999999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceee
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM  127 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~  127 (257)
                       |-+|..+|....-++++...++.|+.|++.||.|||..|  +|+|.||||+|||+
T Consensus       169 -GdnLLklI~~s~YrGlpl~~VK~I~~qvL~GLdYLH~ec--gIIHTDlKPENvLl  221 (590)
T KOG1290|consen  169 -GDNLLKLIKYSNYRGLPLSCVKEICRQVLTGLDYLHREC--GIIHTDLKPENVLL  221 (590)
T ss_pred             -hhHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHhc--CccccCCCcceeee
Confidence             459999998878899999999999999999999999998  99999999999998

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.92  E-value=4.5e-25  Score=173.38  Aligned_cols=235  Identities=15%  Similarity=0.206  Sum_probs=171.0

Q ss_pred             ccccceeeecccCCCCC-ee------eccchhhhHHHHhHhhhcccccccc-CCceeeeceeeeec--CceeEEEeecCC
Q 044568            4 TKLSNFYRSSFNARNSP-WI------SRVSWTADIEVLSVAMRGSKCTRIR-GGLLLNVPVRAKLT--SVSGKIERPVRN   73 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~-~i------~~~~~~~~~~~~~~~~~~~~~~~~~-h~~i~~~~~~~~~~--~~~~lV~E~~~~   73 (257)
                      +|-|.|+.|....+++- +|      |.+...+|++.+.         .++ |+||+.+..+..+.  ....||+||..+
T Consensus        49 GKYSEVFeg~~~~~~eK~ViKiLKPVkkkKIkREikIL~---------nL~gg~NIi~L~DiV~Dp~SktpaLiFE~v~n  119 (338)
T KOG0668|consen   49 GKYSEVFEGINITNNEKCVIKILKPVKKKKIKREIKILQ---------NLRGGPNIIKLLDIVKDPESKTPSLIFEYVNN  119 (338)
T ss_pred             ccHhhHhcccccCCCceEEEeeechHHHHHHHHHHHHHH---------hccCCCCeeehhhhhcCccccCchhHhhhhcc
Confidence            57788999985555444 33      3445678888877         333 99999999988864  467899999999


Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCC-CCceEEeeecccccCCCCc--cc
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE-FWTAKILDFGLAKLPNEDF--VI  150 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~-~~~~kl~dfg~~~~~~~~~--~~  150 (257)
                      .+..+...     +|+..+.+.++.+++.||.|+|+.   ||+|||+||+|++++. ...++|+|.|++.+.....  ..
T Consensus       120 ~Dfk~ly~-----tl~d~dIryY~~elLkALdyCHS~---GImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~~eYnV  191 (338)
T KOG0668|consen  120 TDFKQLYP-----TLTDYDIRYYIYELLKALDYCHSM---GIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNV  191 (338)
T ss_pred             ccHHHHhh-----hhchhhHHHHHHHHHHHHhHHHhc---CcccccCCcceeeechhhceeeeeecchHhhcCCCceeee
Confidence            88887763     478889999999999999999999   9999999999999996 4579999999998654433  44


Q ss_pred             ccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhh-HHHHHH-----------HHHhhhhhhhh
Q 044568          151 DKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEE-IILTNW-----------VYKCFINRELN  217 (257)
Q Consensus       151 ~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~-~~~~~~-----------~~~~~~~~~~~  217 (257)
                      ...+..|.-||.+..- .|+..-|+|||||++..|+..+.||--..+..+. ..+...           .+....+++..
T Consensus       192 RVASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~dN~DQLVkIakVLGt~el~~Yl~KY~i~Ldp~~~  271 (338)
T KOG0668|consen  192 RVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVKIAKVLGTDELYAYLNKYQIDLDPQFE  271 (338)
T ss_pred             eeehhhcCCchheeechhccccHHHHHHHHHHHHHHhccCcccCCCCCHHHHHHHHHHhChHHHHHHHHHHccCCChhHh
Confidence            4555668899999865 4788899999999999999999998644332221 111111           01111223333


Q ss_pred             hhhcCC----------CCCHH-HHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          218 KLVRGT----------KVDKK-NLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       218 ~~~~~~----------~~~~~-~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +++...          +.... ..++.++++...|.+|..+|| +.|...
T Consensus       272 ~i~~~~~rk~w~~Fi~~~n~hl~~peaiDlldklLrYDHqeRlTakEam~  321 (338)
T KOG0668|consen  272 DILGRHSRKPWSRFINSENQHLVSPEAIDLLDKLLRYDHQERLTAKEAMA  321 (338)
T ss_pred             hHhhccccccHHHhCCccccccCChHHHHHHHHHHhhccccccchHHHhc
Confidence            322211          00111 126788999999999999999 998753

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.92  E-value=4.6e-25  Score=167.63  Aligned_cols=233  Identities=16%  Similarity=0.131  Sum_probs=173.9

Q ss_pred             ccceeeec-ccCCCCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCC
Q 044568            6 LSNFYRSS-FNARNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRN   73 (257)
Q Consensus         6 ~~~~y~~~-~~~~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~   73 (257)
                      .+.|++++ .++.+.+++|+++.           .+|+..+.         .+.|.||+++......+...-+|+|||..
T Consensus        15 ygtvfkarn~~t~eivalkrvrlddddegvpssalreicllk---------elkhknivrl~dvlhsdkkltlvfe~cdq   85 (292)
T KOG0662|consen   15 YGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLK---------ELKHKNIVRLHDVLHSDKKLTLVFEFCDQ   85 (292)
T ss_pred             ceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHH---------HhhhcceeehhhhhccCceeEEeHHHhhH
Confidence            35678888 45566678888774           23444444         88999999999999999999999999965


Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc---cc
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF---VI  150 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~---~~  150 (257)
                       +|..+... -++.++...++.++.|++.|+.|+|++   +++|||+||.|.++..+|.+|++|||+++..+.+.   ..
T Consensus        86 -dlkkyfds-lng~~d~~~~rsfmlqllrgl~fchsh---nvlhrdlkpqnllin~ngelkladfglarafgipvrcysa  160 (292)
T KOG0662|consen   86 -DLKKYFDS-LNGDLDPEIVRSFMLQLLRGLGFCHSH---NVLHRDLKPQNLLINRNGELKLADFGLARAFGIPVRCYSA  160 (292)
T ss_pred             -HHHHHHHh-cCCcCCHHHHHHHHHHHHhhhhhhhhh---hhhhccCCcceEEeccCCcEEecccchhhhcCCceEeeec
Confidence             88888765 677899999999999999999999999   99999999999999999999999999998765543   33


Q ss_pred             ccCCCCccCcccccCCC-CCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhh--h---hhhhhcCC
Q 044568          151 DKRDKGYMAPECYKRTP-ISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINR--E---LNKLVRGT  223 (257)
Q Consensus       151 ~~~~~~~~aPE~~~~~~-~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~  223 (257)
                      ..-|.-|.+|.++.+.. |+...|+||-||++.|+.. |++.|.+.+   ....+.+..+......  +   ...+-+-.
T Consensus       161 evvtlwyrppdvlfgakly~tsidmwsagcifaelanagrplfpg~d---vddqlkrif~~lg~p~ed~wps~t~lpdyk  237 (292)
T KOG0662|consen  161 EVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGND---VDDQLKRIFRLLGTPTEDQWPSMTKLPDYK  237 (292)
T ss_pred             eeeeeeccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCc---HHHHHHHHHHHhCCCccccCCccccCCCCc
Confidence            34566699999998765 7899999999999999998 666676542   2223333322222111  1   11111111


Q ss_pred             C------------CCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          224 K------------VDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       224 ~------------~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .            ........-.+++...+.-+|.+|. +++.++
T Consensus       238 ~yp~ypattswsqivp~lns~grdllqkll~cnp~qrisaeaalq  282 (292)
T KOG0662|consen  238 PYPIYPATTSWSQIVPKLNSTGRDLLQKLLKCNPAQRISAEAALQ  282 (292)
T ss_pred             ccCCccccchHHHHhhhhcchhHHHHHHHhccCcccccCHHHHhc
Confidence            0            1112224556788889999999999 887765

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.92  E-value=2.6e-25  Score=181.95  Aligned_cols=206  Identities=19%  Similarity=0.150  Sum_probs=154.7

Q ss_pred             ccccccCCceeeeceeeeec------CceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCe
Q 044568           42 KCTRIRGGLLLNVPVRAKLT------SVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPI  115 (257)
Q Consensus        42 ~~~~~~h~~i~~~~~~~~~~------~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i  115 (257)
                      +...+.|+|+++..+.+.-.      ...|+|||||. +||.+.+.    -.++-.+...+..|.+.|++|||+.   +|
T Consensus        68 l~~~v~~~nii~l~n~ftP~~~l~~~~e~y~v~e~m~-~nl~~vi~----~elDH~tis~i~yq~~~~ik~lhs~---~I  139 (369)
T KOG0665|consen   68 LMKCVNHKNIISLLNVFTPQKTLEEFQEVYLVMELMD-ANLCQVIL----MELDHETISYILYQMLCGIKHLHSA---GI  139 (369)
T ss_pred             hhhhhcccceeeeeeccCccccHHHHHhHHHHHHhhh-hHHHHHHH----HhcchHHHHHHHHHHHHHHHHHHhc---ce
Confidence            44478899999999988743      37899999995 69999986    2356678889999999999999999   99


Q ss_pred             eeccCCCCceeeCCCCceEEeeecccccCCCC--cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCc
Q 044568          116 LHCDIKPQNILMDEFWTAKILDFGLAKLPNED--FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEI  193 (257)
Q Consensus       116 ~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~--~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~  193 (257)
                      +||||||+||++..+..+|+.|||+++..+.+  .+....|..|.|||++.+..+.+.+||||.||++.||++|..-|.+
T Consensus       140 ihRdLkPsnivv~~~~~lKi~dfg~ar~e~~~~~mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~gEli~~~Vlf~g  219 (369)
T KOG0665|consen  140 IHRDLKPSNIVVNSDCTLKILDFGLARTEDTDFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELILGTVLFPG  219 (369)
T ss_pred             eecccCcccceecchhheeeccchhhcccCcccccCchhheeeccCchheeccCCcccchhhhhhhHHHHHhhceEEecC
Confidence            99999999999999999999999999865544  3555677789999999998899999999999999999999999985


Q ss_pred             CCCChhhHH---------------HHHHHH------HhhhhhhhhhhhcCC------CCCHHHHHHHHHHHHHcccCCCC
Q 044568          194 DASKPEEII---------------LTNWVY------KCFINRELNKLVRGT------KVDKKNLENLVKVGLWCVQDEPA  246 (257)
Q Consensus       194 ~~~~~~~~~---------------~~~~~~------~~~~~~~~~~~~~~~------~~~~~~~~~l~~l~~~cl~~~p~  246 (257)
                      ...-+.-..               +.....      +.+..-....+++..      +.+.........++.+||-.||+
T Consensus       220 ~d~idQ~~ki~~~lgtpd~~F~~qL~~~~r~yv~~~~~y~~~~f~~~fpD~~f~~~~e~~~~~~~~ardll~~MLvi~pe  299 (369)
T KOG0665|consen  220 KDHIDQWNKIIEQLGTPDPSFMKQLQPTVRNYVENRPQYQAISFSELFPDSLFPVVLEGSKLDCSLARDLLSKMLVIDPE  299 (369)
T ss_pred             chHHHHHHHHHHHhcCCCHHHHHHhhHHHHHHhhcChHhhccchhhhCCcccccccccCCccchHHHHHHHHHhhccChh
Confidence            422111000               000000      000001111122211      12223446778899999999999


Q ss_pred             CCC-hHHHHH
Q 044568          247 LRP-MKCAVM  255 (257)
Q Consensus       247 ~RP-~~ei~~  255 (257)
                      +|- ++++++
T Consensus       300 ~Risv~daL~  309 (369)
T KOG0665|consen  300 KRISVDDALR  309 (369)
T ss_pred             hcccHHHHhc
Confidence            999 999875

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.92  E-value=2.6e-25  Score=172.17  Aligned_cols=147  Identities=24%  Similarity=0.251  Sum_probs=124.6

Q ss_pred             cccCCceeeeceeeeecCceeEEEeecCCCCHHHHHhcc--CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCC
Q 044568           45 RIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKP  122 (257)
Q Consensus        45 ~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~  122 (257)
                      ...-+.++.+.|........++.||.|. -||+.+-.+.  .+..+++...-+++..++.||.|||++-  .++|||+||
T Consensus       101 ~~~CPf~V~FyGa~~regdvwIcME~M~-tSldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~kL--~vIHRDvKP  177 (282)
T KOG0984|consen  101 TVDCPFTVHFYGALFREGDVWICMELMD-TSLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSKL--SVIHRDVKP  177 (282)
T ss_pred             CCCCCeEEEeehhhhccccEEEeHHHhh-hhHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHHh--hhhhccCCc
Confidence            4456778999998889999999999996 4887765432  5778899888999999999999999984  999999999


Q ss_pred             CceeeCCCCceEEeeecccccCCCCc--ccccCCCCccCcccccC----CCCCccccchhHHHHHHHHHhcCCCCCcC
Q 044568          123 QNILMDEFWTAKILDFGLAKLPNEDF--VIDKRDKGYMAPECYKR----TPISVKADVYGYGIVLLETICCRKNMEID  194 (257)
Q Consensus       123 ~nil~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~aPE~~~~----~~~~~~~Di~s~G~~l~el~~g~~pf~~~  194 (257)
                      +|||++.+|++|++|||.+-...+..  +...|...|+|||.+..    ..|+.+|||||+|+.+.||.+++.||+.-
T Consensus       178 sNiLIn~~GqVKiCDFGIsG~L~dSiAkt~daGCkpYmaPEri~~e~n~~gY~vksDvWSLGItmiElA~lr~PY~~w  255 (282)
T KOG0984|consen  178 SNILINYDGQVKICDFGISGYLVDSIAKTMDAGCKPYMAPERINPELNQKGYSVKSDVWSLGITMIEMAILRFPYESW  255 (282)
T ss_pred             ceEEEccCCcEEEcccccceeehhhhHHHHhcCCCccCChhhcCcccCcccceeehhhhhhhhhhhhhhhcccccccc
Confidence            99999999999999999876543322  33567788999999863    36899999999999999999999999744

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.92  E-value=2.1e-24  Score=174.65  Aligned_cols=184  Identities=17%  Similarity=0.170  Sum_probs=147.2

Q ss_pred             ccccceeeecccC-CCCCeeeccchhh---hHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHH
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSWTA---DIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDI   79 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~   79 (257)
                      +.++.+|++...+ +...++|...-..   ..+.+...  -....+++|+|++++.+.+...+..++++||+++++|.++
T Consensus        10 g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e--~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~   87 (225)
T smart00221       10 GAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLRE--IRILKKLKHPNIVKLYGVFEDPEPLYLVMEYCEGGDLFDY   87 (225)
T ss_pred             CCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHH--HHHHHhCCCCChhhheeeeecCCceEEEEeccCCCCHHHH
Confidence            5678999999876 5566666654211   11111100  0123377899999999999999999999999999999999


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc----ccccCCC
Q 044568           80 IFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF----VIDKRDK  155 (257)
Q Consensus        80 l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~----~~~~~~~  155 (257)
                      +.. ....+++.....++.+++.++.+||++   +++|+|+++.|++++.++.++++|||.+.......    ....++.
T Consensus        88 ~~~-~~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~  163 (225)
T smart00221       88 LRK-KGGKLSEEEARFYLRQILEALEYLHSL---GIVHRDLKPENILLGMDGLVKLADFGLARFIHRDLAALLKTVKGTP  163 (225)
T ss_pred             HHh-cccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeeCceeeEecCcccccccceeccC
Confidence            974 222288999999999999999999999   99999999999999999999999999887544332    3445667


Q ss_pred             CccCcccc-cCCCCCccccchhHHHHHHHHHhcCCCCCc
Q 044568          156 GYMAPECY-KRTPISVKADVYGYGIVLLETICCRKNMEI  193 (257)
Q Consensus       156 ~~~aPE~~-~~~~~~~~~Di~s~G~~l~el~~g~~pf~~  193 (257)
                      .|++||.+ ....++.++|+|+||++++|+++|+.||..
T Consensus       164 ~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~~  202 (225)
T smart00221      164 FYLAPEVLLGGKGYGEAVDIWSLGVILYELLWGPEPFSG  202 (225)
T ss_pred             CcCCHhHhcCCCCCCchhhHHHHHHHHHHHHHCCCCccc
Confidence            79999998 566678899999999999999999999965

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=1.6e-25  Score=180.07  Aligned_cols=236  Identities=18%  Similarity=0.201  Sum_probs=166.5

Q ss_pred             cccceeeecccC-CCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecC-----ceeEE
Q 044568            5 KLSNFYRSSFNA-RNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTS-----VSGKI   67 (257)
Q Consensus         5 ~~~~~y~~~~~~-~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~-----~~~lV   67 (257)
                      -|++|+..+... ++.+++|+.-           +-++.+++.         ..+|.|++...++.+-..     +.|.+
T Consensus        65 AFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLc---------fFkHdNVLSaLDILQPph~dfFqEiYV~  135 (449)
T KOG0664|consen   65 AFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLS---------SFRHDNVLSLLDILQPANPSFFQELYVL  135 (449)
T ss_pred             ceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHH---------hhccccHHHHHHhcCCCCchHHHHHHHH
Confidence            467777766443 4444444432           333444444         778999999888877543     66789


Q ss_pred             EeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC
Q 044568           68 ERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED  147 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~  147 (257)
                      +|+|. .+|..+|-  ++..++.+-++-+..||+.||.|||+.   +|+||||||.|.|+..+..+|++|||+++.-..+
T Consensus       136 TELmQ-SDLHKIIV--SPQ~Ls~DHvKVFlYQILRGLKYLHsA---~ILHRDIKPGNLLVNSNCvLKICDFGLARvee~d  209 (449)
T KOG0664|consen  136 TELMQ-SDLHKIIV--SPQALTPDHVKVFVYQILRGLKYLHTA---NILHRDIKPGNLLVNSNCILKICDFGLARTWDQR  209 (449)
T ss_pred             HHHHH-hhhhheec--cCCCCCcchhhhhHHHHHhhhHHHhhc---chhhccCCCccEEeccCceEEecccccccccchh
Confidence            99995 59999887  778899888889999999999999999   9999999999999999999999999999864433


Q ss_pred             c----ccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHH-----------HHHhh
Q 044568          148 F----VIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNW-----------VYKCF  211 (257)
Q Consensus       148 ~----~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~-----------~~~~~  211 (257)
                      .    +...-|..|.|||.+.+. .|+.+.||||.||+..|++.++..|+...+-.....+...           +-+.-
T Consensus       210 ~~~hMTqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrILFQAq~PiqQL~lItdLLGTPs~EaMr~ACEGA  289 (449)
T KOG0664|consen  210 DRLNMTHEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQAAGPIEQLQMIIDLLGTPSQEAMKYACEGA  289 (449)
T ss_pred             hhhhhHHHHHHHHhccHHHhhcchhhcCccceehhhHHHHHHHhhhhhhhccChHHHHHHHHHHhCCCcHHHHHHHhhhh
Confidence            2    344556679999999876 4899999999999999999999999755332221111111           11111


Q ss_pred             hhhhhhhhhcCC--------CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          212 INRELNKLVRGT--------KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       212 ~~~~~~~~~~~~--------~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ...-++...+..        .-+.....+-..+...++..||.+|. .++.+.
T Consensus       290 k~H~LR~~~k~Ps~~vLYtlsS~~~~~heav~~~~~~l~~d~dkris~~~A~~  342 (449)
T KOG0664|consen  290 KNHVLRAGLRAPDTQRLYKIASPDDKNHEAVDLLQKLLHFDPDKRISVEEALQ  342 (449)
T ss_pred             HHHhhccCCCCCCccceeeecCCcccchHHHHHHHHHhCCCCcccccHhhhcc
Confidence            111111111111        11223335667788889999999999 777654

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.91  E-value=8.1e-25  Score=175.72  Aligned_cols=235  Identities=13%  Similarity=0.165  Sum_probs=159.1

Q ss_pred             ccceeeecccCCCCCeeeccch---hhhHHHHhHhhhccccccccCCcee-eeceeeeecCceeEEEeecCCCCHHHHHh
Q 044568            6 LSNFYRSSFNARNSPWISRVSW---TADIEVLSVAMRGSKCTRIRGGLLL-NVPVRAKLTSVSGKIERPVRNGSLTDIIF   81 (257)
Q Consensus         6 ~~~~y~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~h~~i~-~~~~~~~~~~~~~lV~E~~~~gsL~~~l~   81 (257)
                      |+.+....+...+..++-+.-.   ..+.++..-.-.+  ..--.|.+|+ ..-+.++..+...+++||++.|+|..-+ 
T Consensus        37 FgkIlL~eHr~s~t~ivlKavp~p~tt~~dF~rEfhY~--~~Ls~H~hIi~tY~vaFqt~d~YvF~qE~aP~gdL~snv-  113 (378)
T KOG1345|consen   37 FGKILLAEHRQSKTRIVLKAVPRPQTTQADFVREFHYS--FFLSPHQHIIDTYEVAFQTSDAYVFVQEFAPRGDLRSNV-  113 (378)
T ss_pred             eeeEEeeeccCCceEEEeeccCcchhhHHHHHHHhccc--eeeccchhhhHHHHHHhhcCceEEEeeccCccchhhhhc-
Confidence            4455555666666555432221   1222222211112  1223466666 4445677888888999999999999998 


Q ss_pred             ccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeC--CCCceEEeeecccccCCCCcccccCCCCccC
Q 044568           82 CSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD--EFWTAKILDFGLAKLPNEDFVIDKRDKGYMA  159 (257)
Q Consensus        82 ~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~--~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~a  159 (257)
                        .+.++-+.-...++.|+++|+.|||++   +++|||||.+|||+-  +...+||+|||..+..+........+..|.+
T Consensus       114 --~~~GigE~~~K~v~~ql~SAi~fMHsk---nlVHRdlK~eNiLif~~df~rvKlcDFG~t~k~g~tV~~~~~~~~y~~  188 (378)
T KOG1345|consen  114 --EAAGIGEANTKKVFAQLLSAIEFMHSK---NLVHRDLKAENILIFDADFYRVKLCDFGLTRKVGTTVKYLEYVNNYHA  188 (378)
T ss_pred             --CcccccHHHHHHHHHHHHHHHHHhhcc---chhhcccccceEEEecCCccEEEeeecccccccCceehhhhhhcccCC
Confidence              567788889999999999999999999   999999999999995  3458999999998876666666666778999


Q ss_pred             ccccc---CCC--CCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHH
Q 044568          160 PECYK---RTP--ISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLV  234 (257)
Q Consensus       160 PE~~~---~~~--~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  234 (257)
                      ||.+.   ++.  ..+.+|+|.||++++.+++|..||+.....+  ...  |.+..|......   .....-....+.+.
T Consensus       189 pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQka~~~d--~~Y--~~~~~w~~rk~~---~~P~~F~~fs~~a~  261 (378)
T KOG1345|consen  189 PELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQKASIMD--KPY--WEWEQWLKRKNP---ALPKKFNPFSEKAL  261 (378)
T ss_pred             cHHHhhccccceEecccccchheeeeeeeeecCCCcchhhhccC--chH--HHHHHHhcccCc---cCchhhcccCHHHH
Confidence            98764   232  4688999999999999999999998442221  112  222222221111   10011112335667


Q ss_pred             HHHHHcccCCCCCCC-hHHHHH
Q 044568          235 KVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       235 ~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ++..+-+..+|++|- ..+..+
T Consensus       262 r~Fkk~lt~~~~drcki~~~kk  283 (378)
T KOG1345|consen  262 RLFKKSLTPRFKDRCKIWTAKK  283 (378)
T ss_pred             HHHHHhcCCcccccchhHHHHH
Confidence            777888999999997 666544

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.91  E-value=5.8e-25  Score=194.52  Aligned_cols=234  Identities=16%  Similarity=0.088  Sum_probs=176.0

Q ss_pred             ccccceeeecccCCC-CCeeeccchhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHHHhc
Q 044568            4 TKLSNFYRSSFNARN-SPWISRVSWTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFC   82 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~   82 (257)
                      +.-++|||++..... -.++|-+...--..+-..+..-.-....+|+||+.+.+.....+..+++||||.+|+|.++-+ 
T Consensus        26 gTygdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~~dc~h~nivay~gsylr~dklwicMEycgggslQdiy~-  104 (829)
T KOG0576|consen   26 GTYGDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWICMEYCGGGSLQDIYH-  104 (829)
T ss_pred             CcccchhhhcccccCchhhheeeeccCCccccccccceeeeecCCCcChHHHHhhhhhhcCcEEEEEecCCCcccceee-
Confidence            445789999865544 445666554222222222222224558899999999999999999999999999999999987 


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---cccccCCCCccC
Q 044568           83 SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---FVIDKRDKGYMA  159 (257)
Q Consensus        83 ~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~~~~~~~~~~~a  159 (257)
                       ....+++.+....++..+.|+.|||++   +=+|||||-.||++.+.+.+|++|||.+-.+..+   .....||+.|+|
T Consensus       105 -~TgplselqiayvcRetl~gl~ylhs~---gk~hRdiKGanilltd~gDvklaDfgvsaqitati~KrksfiGtpywma  180 (829)
T KOG0576|consen  105 -VTGPLSELQIAYVCRETLQGLKYLHSQ---GKIHRDIKGANILLTDEGDVKLADFGVSAQITATIAKRKSFIGTPYWMA  180 (829)
T ss_pred             -ecccchhHHHHHHHhhhhccchhhhcC---CcccccccccceeecccCceeecccCchhhhhhhhhhhhcccCCccccc
Confidence             678899999999999999999999999   9999999999999999999999999987544333   256689999999


Q ss_pred             ccccc---CCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC--CCCHHHHHHHH
Q 044568          160 PECYK---RTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT--KVDKKNLENLV  234 (257)
Q Consensus       160 PE~~~---~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~  234 (257)
                      ||+..   ++.|+..+|||+.|+...|+.--++|....-      ..+..  ..+..    ...++.  .......+.+-
T Consensus       181 pEvaaverkggynqlcdiwa~gitAiel~eLqpplfdlh------pmr~l--~LmTk----S~~qpp~lkDk~kws~~fh  248 (829)
T KOG0576|consen  181 PEVAAVERKGGYNQLCDIWALGITAIELGELQPPLFDLH------PMRAL--FLMTK----SGFQPPTLKDKTKWSEFFH  248 (829)
T ss_pred             hhHHHHHhcccccccccccccccchhhhhhcCCcccccc------hHHHH--HHhhc----cCCCCCcccCCccchHHHH
Confidence            99874   5679999999999999999987777753220      01100  11111    111111  22444567899


Q ss_pred             HHHHHcccCCCCCCC-hHHHH
Q 044568          235 KVGLWCVQDEPALRP-MKCAV  254 (257)
Q Consensus       235 ~l~~~cl~~~p~~RP-~~ei~  254 (257)
                      ++++.|+-++|++|| ++.++
T Consensus       249 ~fvK~altknpKkRptaeklL  269 (829)
T KOG0576|consen  249 NFVKGALTKNPKKRPTAEKLL  269 (829)
T ss_pred             HHHHHHhcCCCccCCChhhhe
Confidence            999999999999999 77654

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.90  E-value=1.5e-24  Score=187.40  Aligned_cols=184  Identities=20%  Similarity=0.149  Sum_probs=141.3

Q ss_pred             cccceeeecc-cCCCCCeeeccc-----h---hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCC
Q 044568            5 KLSNFYRSSF-NARNSPWISRVS-----W---TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGS   75 (257)
Q Consensus         5 ~~~~~y~~~~-~~~~~~~i~~~~-----~---~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gs   75 (257)
                      =||.|.++.. ..+..++||-+.     +   ..|++++.......   .-.-.+.+.+.-.|...++.|||+|-+ ..+
T Consensus       444 vFs~Vvra~D~~r~~~vAiKIIRnNE~M~KtGl~EleiLkKL~~AD---~Edk~Hclrl~r~F~hknHLClVFE~L-slN  519 (752)
T KOG0670|consen  444 VFSTVVRARDQARGQEVAIKIIRNNEVMHKTGLKELEILKKLNDAD---PEDKFHCLRLFRHFKHKNHLCLVFEPL-SLN  519 (752)
T ss_pred             eeeeeeeccccCCCCeeEEEEeecchHHhhhhhHHHHHHHHhhccC---chhhhHHHHHHHHhhhcceeEEEehhh-hch
Confidence            3778888884 445566776544     1   45555555222111   111223356667778889999999987 579


Q ss_pred             HHHHHhcc-CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCC-CceEEeeecccccCCCCc-cccc
Q 044568           76 LTDIIFCS-AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF-WTAKILDFGLAKLPNEDF-VIDK  152 (257)
Q Consensus        76 L~~~l~~~-~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~-~~~kl~dfg~~~~~~~~~-~~~~  152 (257)
                      |.++|... .+.+|....+..|+.|+..||..|-..   +++|.||||.|||+.+. ..+||+|||.+...+... +...
T Consensus       520 LRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~c---~vlHaDIKPDNiLVNE~k~iLKLCDfGSA~~~~eneitPYL  596 (752)
T KOG0670|consen  520 LREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKKC---GVLHADIKPDNILVNESKNILKLCDFGSASFASENEITPYL  596 (752)
T ss_pred             HHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHhc---CeeecccCccceEeccCcceeeeccCccccccccccccHHH
Confidence            99999754 466788899999999999999999998   99999999999999864 467999999987654332 3334


Q ss_pred             CCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCC
Q 044568          153 RDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDA  195 (257)
Q Consensus       153 ~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~  195 (257)
                      -+..|.|||++.+-+|+...|+||.||+|||+.||+..|.+..
T Consensus       597 VSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFpG~T  639 (752)
T KOG0670|consen  597 VSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFPGRT  639 (752)
T ss_pred             HHHhccCcceeecCcccCCccceeeceeeEEeeccceecCCCC
Confidence            4556999999999999999999999999999999999998753

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.90  E-value=1.4e-23  Score=177.28  Aligned_cols=236  Identities=17%  Similarity=0.182  Sum_probs=171.6

Q ss_pred             ccccceeeecccC----CCCCeeeccc-------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSFNA----RNSPWISRVS-------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~~----~~~~~i~~~~-------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +.|+.||++++.+    ++.+++|.+.       ..+|++.+. .       -..+.|++++.+.+.+.++..+|+||++
T Consensus        47 GsFssv~~a~~~~~~~~~~~valk~i~~ts~p~ri~~El~~L~-~-------~gG~~ni~~~~~~~rnnd~v~ivlp~~~  118 (418)
T KOG1167|consen   47 GSFSSVYKATDIEQDTKRRYVALKAIYRTSSPSRILNELEMLY-R-------LGGSDNIIKLNGCFRNNDQVAIVLPYFE  118 (418)
T ss_pred             cchhhhhhhhHhhhccccceEeeeecccccCchHHHHHHHHHH-H-------hccchhhhcchhhhccCCeeEEEecccC
Confidence            5689999999766    4556676644       356666555 2       2348899999999999999999999999


Q ss_pred             CCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCC-CCceEEeeecccccC-------
Q 044568           73 NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE-FWTAKILDFGLAKLP-------  144 (257)
Q Consensus        73 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~-~~~~kl~dfg~~~~~-------  144 (257)
                      +....++..+     ++..++..++..+..||.++|++   ||+|||+||+|+|.+. .+.-.|.|||++...       
T Consensus       119 H~~f~~l~~~-----l~~~~i~~Yl~~ll~Al~~~h~~---GIvHRDiKpsNFL~n~~t~rg~LvDFgLA~~~d~~~~~~  190 (418)
T KOG1167|consen  119 HDRFRDLYRS-----LSLAEIRWYLRNLLKALAHLHKN---GIVHRDIKPSNFLYNRRTQRGVLVDFGLAQRYDGYQQTE  190 (418)
T ss_pred             ccCHHHHHhc-----CCHHHHHHHHHHHHHHhhhhhcc---CccccCCCccccccccccCCceEEechhHHHHHhhhhhh
Confidence            9999999975     67899999999999999999999   9999999999999985 456688999998610       


Q ss_pred             ----------CC-Cc-----------------------------ccccCCCCccCcccccCCC-CCccccchhHHHHHHH
Q 044568          145 ----------NE-DF-----------------------------VIDKRDKGYMAPECYKRTP-ISVKADVYGYGIVLLE  183 (257)
Q Consensus       145 ----------~~-~~-----------------------------~~~~~~~~~~aPE~~~~~~-~~~~~Di~s~G~~l~e  183 (257)
                                .. ..                             ....||++|.|||++.+.+ .++++||||.|++++-
T Consensus       191 ~s~~~~~~~~~~~~g~~~~~~~~~~~~~p~g~~~~~~~~r~~~~anrAGT~GfRaPEvL~k~~~QttaiDiws~GVI~Ls  270 (418)
T KOG1167|consen  191 HSRSYSGRHATPAMGKDVHCQSVATASKPAGYYRRCNDGRPSERANRAGTPGFRAPEVLFRCPRQTTAIDIWSAGVILLS  270 (418)
T ss_pred             hhhhhhcccCCccccCcccccccccccCCCCceeccCCCccceecccCCCCCCCchHHHhhccCcCCccceeeccceeeh
Confidence                      00 00                             2347888999999998765 5789999999999999


Q ss_pred             HHhcCCCCCcCCCChhhHH----------HHHHHHHh-----hh------hhh---------hhhhhcCC-------CCC
Q 044568          184 TICCRKNMEIDASKPEEII----------LTNWVYKC-----FI------NRE---------LNKLVRGT-------KVD  226 (257)
Q Consensus       184 l~~g~~pf~~~~~~~~~~~----------~~~~~~~~-----~~------~~~---------~~~~~~~~-------~~~  226 (257)
                      +++++.||-....+...+.          +...+...     +.      ..+         ...+.+..       ...
T Consensus       271 lls~~~PFf~a~dd~~al~ei~tifG~~~mrk~A~l~g~~~l~~ksn~~~~~e~~~~f~s~~~~~~~~~~q~n~~~~~~~  350 (418)
T KOG1167|consen  271 LLSRRYPFFKAKDDADALAEIATIFGSAEMRKCAALPGRILLWQKSNIPTIPELRVNFETLHIESIYKSRQPNTEREIGS  350 (418)
T ss_pred             hhccccccccCccccchHHHHHHHhChHHHHHHhhcCCceeeeccccccccHHHHhchhccChhhcccccccceeecccc
Confidence            9999999975433222110          11111000     00      000         01111100       111


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          227 KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       227 ~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +..+..+.+++.+|++.||.+|- ++|.++
T Consensus       351 d~~~~~~~dlLdk~le~np~kRitAEeALk  380 (418)
T KOG1167|consen  351 DVFPALLLDLLDKCLELNPQKRITAEDALK  380 (418)
T ss_pred             ccccHHHHHHHHHHccCChhhcccHHHHhc
Confidence            22235899999999999999999 999875

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.90  E-value=4.1e-24  Score=186.61  Aligned_cols=155  Identities=22%  Similarity=0.209  Sum_probs=137.0

Q ss_pred             hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec-CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHH
Q 044568           27 WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV-RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGIL  105 (257)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~-~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~  105 (257)
                      .+.|++.++      .+.+..|+||+++...+.+.+.++|+||-. ++.+|.++|.  -...+++.++..++.|++.|++
T Consensus       613 Vp~EIqIla------~l~~~sH~NIlKlLdfFEddd~yyl~te~hg~gIDLFd~IE--~kp~m~E~eAk~IFkQV~agi~  684 (772)
T KOG1152|consen  613 VPSEIQILA------TLNKHSHENILKLLDFFEDDDYYYLETEVHGEGIDLFDFIE--FKPRMDEPEAKLIFKQVVAGIK  684 (772)
T ss_pred             cchhHHHHH------HhhhcCccchhhhhheeecCCeeEEEecCCCCCcchhhhhh--ccCccchHHHHHHHHHHHhccc
Confidence            366777666      444666999999999999999999999976 4559999997  6778999999999999999999


Q ss_pred             HHhhCCCCCeeeccCCCCceeeCCCCceEEeeeccccc-CCCCcccccCCCCccCcccccCCCCC-ccccchhHHHHHHH
Q 044568          106 YLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKL-PNEDFVIDKRDKGYMAPECYKRTPIS-VKADVYGYGIVLLE  183 (257)
Q Consensus       106 ~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~-~~~~~~~~~~~~~~~aPE~~~~~~~~-~~~Di~s~G~~l~e  183 (257)
                      +||++   +|+|||||-+|+.++.+|.+||+|||.+.. .+.+.....||..|.|||.+.+.+|- ...|||++|+++|.
T Consensus       685 hlh~~---~ivhrdikdenvivd~~g~~klidfgsaa~~ksgpfd~f~gtv~~aapevl~g~~y~gk~qdiwalgillyt  761 (772)
T KOG1152|consen  685 HLHDQ---GIVHRDIKDENVIVDSNGFVKLIDFGSAAYTKSGPFDVFVGTVDYAAPEVLGGEKYLGKPQDIWALGILLYT  761 (772)
T ss_pred             ccccc---CceecccccccEEEecCCeEEEeeccchhhhcCCCcceeeeeccccchhhhCCCccCCCcchhhhhhheeeE
Confidence            99999   999999999999999999999999998753 45566778899999999999998874 66899999999999


Q ss_pred             HHhcCCCCC
Q 044568          184 TICCRKNME  192 (257)
Q Consensus       184 l~~g~~pf~  192 (257)
                      ++...-||.
T Consensus       762 ivykenpyy  770 (772)
T KOG1152|consen  762 IVYKENPYY  770 (772)
T ss_pred             EEeccCCCc
Confidence            999988886

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.88  E-value=3.4e-22  Score=176.02  Aligned_cols=202  Identities=22%  Similarity=0.277  Sum_probs=155.7

Q ss_pred             cccCCceeeeceeeeecCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCe-eeccCCCC
Q 044568           45 RIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPI-LHCDIKPQ  123 (257)
Q Consensus        45 ~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i-~h~dl~~~  123 (257)
                      .+.|.|+.++.+.+.++...+.|.+||..|+|.|.+.. ....+++.-...+..+++.|+.|+|..   .| .|+.++..
T Consensus         3 ~l~h~n~~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~~-~~~~~d~~F~~s~~rdi~~Gl~ylh~s---~i~~hg~l~s~   78 (484)
T KOG1023|consen    3 QLDHDNLNKFIGASVDGPEMIVIWEYCSRGSLLDILSN-EDIKLDYFFILSFIRDISKGLAYLHNS---PIGYHGALKSS   78 (484)
T ss_pred             ccchhhhhhheeeEecCCceEEEEeeecCccHHhHHhc-cccCccHHHHHHHHHHHHHHHHHHhcC---cceeeeeeccc
Confidence            67899999999999999999999999999999999986 678889999999999999999999998   66 99999999


Q ss_pred             ceeeCCCCceEEeeecccccCCCCc-----ccccCCCCccCcccccCCC-------CCccccchhHHHHHHHHHhcCCCC
Q 044568          124 NILMDEFWTAKILDFGLAKLPNEDF-----VIDKRDKGYMAPECYKRTP-------ISVKADVYGYGIVLLETICCRKNM  191 (257)
Q Consensus       124 nil~~~~~~~kl~dfg~~~~~~~~~-----~~~~~~~~~~aPE~~~~~~-------~~~~~Di~s~G~~l~el~~g~~pf  191 (257)
                      |++++....+|++|||+........     ........|.|||.+....       .+.+.|+||||++++|+++.+.||
T Consensus        79 nClvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~~~~  158 (484)
T KOG1023|consen   79 NCLVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILFRSGPF  158 (484)
T ss_pred             cceeeeeEEEEechhhhcccccccccccccchhHHHHhccCHHHhcccccccccccccccCCeehHHHHHHHHHhccCcc
Confidence            9999999999999999976543211     1112233499999997641       357799999999999999999999


Q ss_pred             CcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCC-CHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          192 EIDASKPEEIILTNWVYKCFINRELNKLVRGTKV-DKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +..........+......     .....+.|... ..+..+.+..++..||..+|.+|| ++.|-.
T Consensus       159 ~~~~~~~~~~eii~~~~~-----~~~~~~rP~i~~~~e~~~~l~~l~~~cw~e~P~~rPs~~~i~~  219 (484)
T KOG1023|consen  159 DLRNLVEDPDEIILRVKK-----GGSNPFRPSIELLNELPPELLLLVARCWEEIPEKRPSIEQIRS  219 (484)
T ss_pred             ccccccCChHHHHHHHHh-----cCCCCcCcchhhhhhcchHHHHHHHHhcccChhhCccHHHHHh
Confidence            875443332111111111     11112222211 114455899999999999999999 988754

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.86  E-value=4e-22  Score=160.59  Aligned_cols=196  Identities=22%  Similarity=0.260  Sum_probs=147.5

Q ss_pred             ccccCCceeeeceeeeecCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCC
Q 044568           44 TRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQ  123 (257)
Q Consensus        44 ~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~  123 (257)
                      .-..||||+.+.+.+....+..++..||+.|||+..+++......+..++++++.+++.|+.|||+- .+-|.--.+...
T Consensus       242 rifshpnilpvlgacnsppnlv~isq~mp~gslynvlhe~t~vvvd~sqav~faldiargmaflhsl-ep~ipr~~lns~  320 (448)
T KOG0195|consen  242 RIFSHPNILPVLGACNSPPNLVIISQYMPFGSLYNVLHEQTSVVVDHSQAVRFALDIARGMAFLHSL-EPMIPRFYLNSK  320 (448)
T ss_pred             eeecCCchhhhhhhccCCCCceEeeeeccchHHHHHHhcCccEEEecchHHHHHHHHHhhHHHHhhc-chhhhhhhcccc
Confidence            3567999999999999999999999999999999999976666678899999999999999999997 444555668899


Q ss_pred             ceeeCCCCceEEeeecccccCCCCcccccCCCCccCcccccCCCCC---ccccchhHHHHHHHHHhcCCCCCcCCCChhh
Q 044568          124 NILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMAPECYKRTPIS---VKADVYGYGIVLLETICCRKNMEIDASKPEE  200 (257)
Q Consensus       124 nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~---~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~  200 (257)
                      .++++++.+.+++- +-.++ +.........+.|++||.+...+.+   .++|+|||++++||+.|+..||..-.+-+-.
T Consensus       321 hvmidedltarism-ad~kf-sfqe~gr~y~pawmspealqrkped~n~raadmwsfaillwel~trevpfadlspmecg  398 (448)
T KOG0195|consen  321 HVMIDEDLTARISM-ADTKF-SFQEVGRAYSPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREVPFADLSPMECG  398 (448)
T ss_pred             eEEecchhhhheec-cccee-eeeccccccCcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhccccccccCCchhhh
Confidence            99999988877632 21111 1111233456789999999876643   5789999999999999999999754211100


Q ss_pred             HHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          201 IILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                                 ..-.++.+-.  ..|......+.+|+.-|+..||.+|| +..|+-
T Consensus       399 -----------mkialeglrv--~ippgis~hm~klm~icmnedpgkrpkfdmivp  441 (448)
T KOG0195|consen  399 -----------MKIALEGLRV--HIPPGISRHMNKLMNICMNEDPGKRPKFDMIVP  441 (448)
T ss_pred             -----------hhhhhccccc--cCCCCccHHHHHHHHHHhcCCCCcCCCcceehh
Confidence                       0011111111  23445567788999999999999999 988764

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=1e-21  Score=179.82  Aligned_cols=201  Identities=15%  Similarity=0.122  Sum_probs=153.0

Q ss_pred             ccccCCceeeeceeeeecCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCC
Q 044568           44 TRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQ  123 (257)
Q Consensus        44 ~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~  123 (257)
                      ..+.|+|++.............-+||||++ +|...+.  ....+...++..++.|++.|++|+|+.   |+.|||+|++
T Consensus       376 ~~l~h~~~~e~l~~~~~~~~~~~~mE~~~~-Dlf~~~~--~~~~~~~~e~~c~fKqL~~Gv~y~h~~---GiahrdlK~e  449 (601)
T KOG0590|consen  376 SSLSHPNIIETLDIVQEIDGILQSMEYCPY-DLFSLVM--SNGKLTPLEADCFFKQLLRGVKYLHSM---GLAHRDLKLE  449 (601)
T ss_pred             ccccCCchhhhHHHHhhcccchhhhhcccH-HHHHHHh--cccccchhhhhHHHHHHHHHHHHHHhc---CceeccCccc
Confidence            367899987777766665555555999998 9999996  345788899999999999999999999   9999999999


Q ss_pred             ceeeCCCCceEEeeecccccCCCCc-------ccccCCCCccCcccccCCCCCc-cccchhHHHHHHHHHhcCCCCCcCC
Q 044568          124 NILMDEFWTAKILDFGLAKLPNEDF-------VIDKRDKGYMAPECYKRTPISV-KADVYGYGIVLLETICCRKNMEIDA  195 (257)
Q Consensus       124 nil~~~~~~~kl~dfg~~~~~~~~~-------~~~~~~~~~~aPE~~~~~~~~~-~~Di~s~G~~l~el~~g~~pf~~~~  195 (257)
                      |+++..++.+|++|||.+.......       ....|+.+|+|||.+.+..|++ ..||||.|+++..|.+|+.||....
T Consensus       450 nll~~~~g~lki~Dfg~~~vf~~~~e~~~~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~  529 (601)
T KOG0590|consen  450 NLLVTENGILKIIDFGAASVFRYPWEKNIHESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGRFPWKVAK  529 (601)
T ss_pred             cEEEecCCceEEeecCcceeeccCcchhhhhhcCcccCCcCcCcccccccccCcchhhhhhccceEEEEecCCCcccccc
Confidence            9999999999999999877533222       3457778899999999999975 4699999999999999999998663


Q ss_pred             CChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHh
Q 044568          196 SKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMM  256 (257)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~  256 (257)
                      ..+....      .............+.......+.+...++.++|+.||.+|- +.+|++.
T Consensus       530 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~P~~R~ti~~i~~d  585 (601)
T KOG0590|consen  530 KSDNSFK------TNNYSDQRNIFEGPNRLLSLLPRETRIIIYRMLQLDPTKRITIEQILND  585 (601)
T ss_pred             ccccchh------hhccccccccccChHHHHHhchhhHHHHHHHHccCChhheecHHHHhhC
Confidence            3322110      00000000001111122334457788899999999999999 9999863

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.81  E-value=1.1e-18  Score=149.93  Aligned_cols=233  Identities=16%  Similarity=0.085  Sum_probs=163.5

Q ss_pred             ccccceeeecccCCC--CCeeeccc---------hhhhHHHHhHhhhccccccccCCceeeeceee-eecCceeEEEeec
Q 044568            4 TKLSNFYRSSFNARN--SPWISRVS---------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRA-KLTSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~--~~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~-~~~~~~~lV~E~~   71 (257)
                      +.|+.||.+......  ..++|...         +..|.+++.....     ......+..+...+ ......++||+.+
T Consensus        29 G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~-----~~~~~~~~~~~~~G~~~~~~~~iVM~l~  103 (322)
T KOG1164|consen   29 GGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEK-----KNGPSHFPKLLDHGRSTEDFNFIVMSLL  103 (322)
T ss_pred             cCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhh-----hcCCCCCCEEEEeccCCCceeEEEEecc
Confidence            568899999977764  44444322         3345555552221     11124556777777 4777899999988


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCC-----CceEEeeecccc--cC
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF-----WTAKILDFGLAK--LP  144 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~-----~~~kl~dfg~~~--~~  144 (257)
                       |.||.++......+.++..++..++.|++.+|+++|+.   |++||||||.|++++..     ..+.+.|||+++  ..
T Consensus       104 -G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~~---G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar~~~~  179 (322)
T KOG1164|consen  104 -GPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLHSK---GFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLARRFKY  179 (322)
T ss_pred             -CccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHHhc---CcccCCcCHHHeeecCCCCcccceEEEEecCCCccccc
Confidence             67999988654568899999999999999999999999   99999999999999865     468999999998  31


Q ss_pred             CCC-----------cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhh
Q 044568          145 NED-----------FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFIN  213 (257)
Q Consensus       145 ~~~-----------~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~  213 (257)
                      ...           .....||..|.++.+..+...+.+.|+||++.++.|+..|..||...................   
T Consensus       180 ~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~g~LPW~~~~~~~~~~~~~~~~~~~---  256 (322)
T KOG1164|consen  180 VGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGRRDDLESLFYMLLELLKGSLPWEALEMTDLKSKFEKDPRKL---  256 (322)
T ss_pred             cCCCCcccccCCCCccCCCCccccccHHHhCCCccCCchhhhhHHHHHHHHhcCCCCCccccccchHHHHHHHhhhh---
Confidence            111           112348889999999999999999999999999999999999997653332211111111111   


Q ss_pred             hhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          214 RELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                           ....  .....+..+..+...+-..+..++| ...+.+
T Consensus       257 -----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Pdy~~~~~  292 (322)
T KOG1164|consen  257 -----LTDR--FGDLKPEEFAKILEYIDSLDYEDKPDYEKLAE  292 (322)
T ss_pred             -----cccc--ccCCChHHHHHHHHHhhccCCcCCCCHHHHHH
Confidence                 1100  1222345566666666668888888 666644

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.78  E-value=1.1e-17  Score=141.13  Aligned_cols=244  Identities=18%  Similarity=0.165  Sum_probs=165.2

Q ss_pred             ccccceeeecccCCCCCeeeccchhhhHH---HHhHhhhccccccccCC-ceeeeceeeeecCceeEEEeecCCCCHHHH
Q 044568            4 TKLSNFYRSSFNARNSPWISRVSWTADIE---VLSVAMRGSKCTRIRGG-LLLNVPVRAKLTSVSGKIERPVRNGSLTDI   79 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~h~-~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~   79 (257)
                      +.++.||++...  ...+++.........   ...+.........+.|+ +++.+...+......++++|++.++++.++
T Consensus        11 g~~~~v~~~~~~--~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~   88 (384)
T COG0515          11 GSFGEVYLARDR--KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVMEYVDGGSLEDL   88 (384)
T ss_pred             CCCeEEEEEEec--cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEecCCCCcHHHH
Confidence            455788888877  444554433211110   00000000023377777 699999999777778999999999999977


Q ss_pred             HhccCC-CCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCC-ceEEeeecccccCCCC---------c
Q 044568           80 IFCSAE-RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW-TAKILDFGLAKLPNED---------F  148 (257)
Q Consensus        80 l~~~~~-~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~-~~kl~dfg~~~~~~~~---------~  148 (257)
                      +..... ..++......+..|++.++.|+|+.   +++|||+||.|++++... .+++.|||.+......         .
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~~---~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~  165 (384)
T COG0515          89 LKKIGRKGPLSESEALFILAQILSALEYLHSK---GIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALP  165 (384)
T ss_pred             HHhcccccCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeeecCCCCeEEEeccCcceecCCCCccccccccc
Confidence            763111 2788999999999999999999999   999999999999999888 7999999988743322         3


Q ss_pred             ccccCCCCccCcccccC---CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCC
Q 044568          149 VIDKRDKGYMAPECYKR---TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKV  225 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~---~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (257)
                      ....++..|.+||.+..   ..++...|+||+|++++++++|..||...................... ........ ..
T Consensus       166 ~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~  243 (384)
T COG0515         166 STSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPTP-SLASPLSP-SN  243 (384)
T ss_pred             cccccccccCCHHHhcCCCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCccccHHHHHHHHHhcCCc-ccccccCc-cc
Confidence            56678888999999987   567899999999999999999999976553210000111100000000 00000000 00


Q ss_pred             CHHHHHHHHHHHHHcccCCCCCCC-hHHHH
Q 044568          226 DKKNLENLVKVGLWCVQDEPALRP-MKCAV  254 (257)
Q Consensus       226 ~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~  254 (257)
                      .......+.+++..++..+|..|. +.+..
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  273 (384)
T COG0515         244 PELISKAASDLLKKLLAKDPKNRLSSSSDL  273 (384)
T ss_pred             cchhhHHHHHHHHHHHhcCchhcCCHHHHh
Confidence            012235788899999999999999 66543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.78  E-value=1.9e-19  Score=167.46  Aligned_cols=225  Identities=18%  Similarity=0.203  Sum_probs=159.8

Q ss_pred             cccccceeeecccCCCCCeeec----c------chhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            3 CTKLSNFYRSSFNARNSPWISR----V------SWTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         3 ~~~~~~~y~~~~~~~~~~~i~~----~------~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +|-|-.+.|++..+|. +++|.    .      .|.+.++-+..       .-.+++|.+.+.-.-....-.|||-+|..
T Consensus        33 stRFlKv~r~k~~eG~-vVvKVFvk~~p~~sL~~~~qrL~~ik~-------~l~~~pn~lPfqk~~~t~kAAylvRqyvk  104 (1431)
T KOG1240|consen   33 STRFLKVARAKDREGL-VVVKVFVKQDPTISLRPFKQRLEEIKF-------ALMKAPNCLPFQKVLVTDKAAYLVRQYVK  104 (1431)
T ss_pred             chhhhhhhhccCCCce-EEEEEEeccCCCCCchHHHHHHHHHHH-------HhhcCCcccchHHHHHhhHHHHHHHHHHh
Confidence            4567778888888888 44443    1      14444443332       24568898888888777888899999998


Q ss_pred             CCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccC----CCCc
Q 044568           73 NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLP----NEDF  148 (257)
Q Consensus        73 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~----~~~~  148 (257)
                      + +|+|.|.  ...=+...+++-|+-|++.|+.-+|+.   ||.|||||.+|||+..=+++.|+||.--+..    +.+.
T Consensus       105 h-nLyDRlS--TRPFL~~iEKkWiaFQLL~al~qcH~~---gVcHGDIKsENILiTSWNW~~LtDFAsFKPtYLPeDNPa  178 (1431)
T KOG1240|consen  105 H-NLYDRLS--TRPFLVLIEKKWIAFQLLKALSQCHKL---GVCHGDIKSENILITSWNWLYLTDFASFKPTYLPEDNPA  178 (1431)
T ss_pred             h-hhhhhhc--cchHHHHHHHHHHHHHHHHHHHHHHHc---CccccccccceEEEeeechhhhhcccccCCccCCCCCcc
Confidence            6 9999994  333356667778899999999999999   9999999999999999889999999764421    1111


Q ss_pred             ------ccccCCCCccCcccccCC----------C-CCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHh
Q 044568          149 ------VIDKRDKGYMAPECYKRT----------P-ISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKC  210 (257)
Q Consensus       149 ------~~~~~~~~~~aPE~~~~~----------~-~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~  210 (257)
                            .......+|.|||.+...          + .+++.||||+||++.|+++ |++||...       .+  .++..
T Consensus       179 df~fFFDTSrRRtCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~LS-------QL--~aYr~  249 (1431)
T KOG1240|consen  179 DFTFFFDTSRRRTCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFTLS-------QL--LAYRS  249 (1431)
T ss_pred             cceEEEecCCceeeecChHhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCcccHH-------HH--HhHhc
Confidence                  222333459999988531          2 5678899999999999999 78888632       11  11221


Q ss_pred             hhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          211 FINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ......+.++...+     ...+.+|+..|++.||.+|- +++.++
T Consensus       250 ~~~~~~e~~Le~Ie-----d~~~Rnlil~Mi~rdPs~RlSAedyL~  290 (1431)
T KOG1240|consen  250 GNADDPEQLLEKIE-----DVSLRNLILSMIQRDPSKRLSAEDYLQ  290 (1431)
T ss_pred             cCccCHHHHHHhCc-----CccHHHHHHHHHccCchhccCHHHHHH
Confidence            11222222333221     13688999999999999999 998875

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.77  E-value=2.6e-18  Score=148.49  Aligned_cols=138  Identities=22%  Similarity=0.181  Sum_probs=102.5

Q ss_pred             ccccceeeecccC--CCCCeeeccc--------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEE
Q 044568            4 TKLSNFYRSSFNA--RNSPWISRVS--------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~~~--~~~~~i~~~~--------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV   67 (257)
                      +.++.||++....  +..+++|...              +.+|++.+.         ++.|+|++.....   .+..+||
T Consensus        29 G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~---------~L~h~~iv~~l~~---~~~~~LV   96 (365)
T PRK09188         29 DVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALK---------TVRGIGVVPQLLA---TGKDGLV   96 (365)
T ss_pred             cCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHH---------hccCCCCCcEEEE---cCCcEEE
Confidence            5789999998764  3444776532              345555555         8889998743222   2567999


Q ss_pred             EeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccC-CCCceeeCCCCceEEeeecccccCCC
Q 044568           68 ERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDI-KPQNILMDEFWTAKILDFGLAKLPNE  146 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl-~~~nil~~~~~~~kl~dfg~~~~~~~  146 (257)
                      |||++|++|... .  ...      ...++.|+++||.|||++   +|+|||| ||.||+++.++.++|+|||+++....
T Consensus        97 mE~~~G~~L~~~-~--~~~------~~~~~~~i~~aL~~lH~~---gIiHrDL~KP~NILv~~~~~ikLiDFGlA~~~~~  164 (365)
T PRK09188         97 RGWTEGVPLHLA-R--PHG------DPAWFRSAHRALRDLHRA---GITHNDLAKPQNWLMGPDGEAAVIDFQLASVFRR  164 (365)
T ss_pred             EEccCCCCHHHh-C--ccc------hHHHHHHHHHHHHHHHHC---CCeeCCCCCcceEEEcCCCCEEEEECccceeccc
Confidence            999999999732 1  111      146789999999999999   9999999 99999999889999999999885433


Q ss_pred             Cc-----------ccccCCCCccCcccccC
Q 044568          147 DF-----------VIDKRDKGYMAPECYKR  165 (257)
Q Consensus       147 ~~-----------~~~~~~~~~~aPE~~~~  165 (257)
                      ..           ....+++.|.+||++..
T Consensus       165 ~~~~~~~~~~~d~~~~~~~~~~~~pe~~~~  194 (365)
T PRK09188        165 RGALYRIAAYEDLRHLLKHKRTYAPDALTP  194 (365)
T ss_pred             CcchhhhhhhhhhhhhhccCccCCcccCCh
Confidence            32           23355667999999863

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.76  E-value=1.2e-17  Score=132.70  Aligned_cols=183  Identities=18%  Similarity=0.113  Sum_probs=141.9

Q ss_pred             cccccceeeecc-cCCCCCeeec----cch---hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCC
Q 044568            3 CTKLSNFYRSSF-NARNSPWISR----VSW---TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNG   74 (257)
Q Consensus         3 ~~~~~~~y~~~~-~~~~~~~i~~----~~~---~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~g   74 (257)
                      |++|+++|.|.. ..++.++||-    +.+   .-|.+++.....|..+.++        ..++.+.+.-.|||++. |.
T Consensus        25 sGSFGdIy~~~~i~~ge~VAiK~Es~~a~hpqL~yEskvY~iL~~g~GiP~i--------~~y~~e~~ynvlVMdLL-GP   95 (341)
T KOG1163|consen   25 SGSFGDIYLGISITSGEEVAIKLESSKAKHPQLLYESKVYRILQGGVGIPHI--------RHYGTEKDYNVLVMDLL-GP   95 (341)
T ss_pred             CCchhheeeeeeccCCceEEEEeecccCCCcchhHHHHHHHHhccCCCCchh--------hhhccccccceeeeecc-Cc
Confidence            789999999995 5566677753    223   4566676654444333333        33455677788999998 57


Q ss_pred             CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCC---CceEEeeecccccCCCCc---
Q 044568           75 SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF---WTAKILDFGLAKLPNEDF---  148 (257)
Q Consensus        75 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~---~~~kl~dfg~~~~~~~~~---  148 (257)
                      ||++...= -.+.++..+++.++-|++.-++|+|.+   +.+||||||+|+|++-+   ..+.++|||+++...+..   
T Consensus        96 sLEdLfnf-C~R~ftmkTvLMLaDQml~RiEyvH~r---~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky~d~~t~~  171 (341)
T KOG1163|consen   96 SLEDLFNF-CSRRFTMKTVLMLADQMLSRIEYVHLR---NFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKYRDIRTRQ  171 (341)
T ss_pred             cHHHHHHH-HhhhhhHHhHHHHHHHHHHHHHHHHhh---ccccccCCccceeeccccccceEEEEeccchhhhccccccc
Confidence            99998753 567799999999999999999999999   99999999999999854   357899999998643222   


Q ss_pred             -------ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCCh
Q 044568          149 -------VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKP  198 (257)
Q Consensus       149 -------~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~  198 (257)
                             ....||..|.+-.+..+...+.+.|+-|+|.++...--|+.||++-....
T Consensus       172 HIpyre~r~ltGTaRYASinAh~g~eqSRRDDmeSvgYvLmYfnrG~LPWQglka~t  228 (341)
T KOG1163|consen  172 HIPYREDRNLTGTARYASINAHLGIEQSRRDDMESVGYVLMYFNRGSLPWQGLKAAT  228 (341)
T ss_pred             cCccccCCccceeeeehhhhhhhhhhhhhhhhhhhhcceeeeeecCCCcccccchhh
Confidence                   44577888998888877777889999999999999999999999764443

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.75  E-value=8.8e-18  Score=141.93  Aligned_cols=184  Identities=16%  Similarity=0.196  Sum_probs=133.6

Q ss_pred             ccCCceeeeceeeeec---------------------------CceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHH
Q 044568           46 IRGGLLLNVPVRAKLT---------------------------SVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIAL   98 (257)
Q Consensus        46 ~~h~~i~~~~~~~~~~---------------------------~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~   98 (257)
                      .+|||||.+.+.+-+.                           ...|+||.-.++ +|.+++.   ....+.....-++.
T Consensus       273 a~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~~-tLr~yl~---~~~~s~r~~~~~la  348 (598)
T KOG4158|consen  273 AKHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYRQ-TLREYLW---TRHRSYRTGRVILA  348 (598)
T ss_pred             CCCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcchh-hHHHHHh---cCCCchHHHHHHHH
Confidence            5789998877665432                           256789987765 9999995   34466677888999


Q ss_pred             HHHHHHHHHhhCCCCCeeeccCCCCceeeC--CC--CceEEeeecccccCCC---------CcccccCCCCccCcccccC
Q 044568           99 DVAKGILYLHDECEPPILHCDIKPQNILMD--EF--WTAKILDFGLAKLPNE---------DFVIDKRDKGYMAPECYKR  165 (257)
Q Consensus        99 ~i~~~l~~lh~~~~~~i~h~dl~~~nil~~--~~--~~~kl~dfg~~~~~~~---------~~~~~~~~~~~~aPE~~~~  165 (257)
                      |+++|+.|||++   |+.|||+|.+|||+.  ++  ..+.++|||++---+.         .....-|+-..+|||+...
T Consensus       349 QlLEav~hL~~h---gvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lmAPEi~ta  425 (598)
T KOG4158|consen  349 QLLEAVTHLHKH---GVAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLMAPEIATA  425 (598)
T ss_pred             HHHHHHHHHHHc---cchhhcccccceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCCcceecchhhhhc
Confidence            999999999999   999999999999984  33  3568999998642211         1234455666899998864


Q ss_pred             CC-----C-CccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHH
Q 044568          166 TP-----I-SVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLW  239 (257)
Q Consensus       166 ~~-----~-~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  239 (257)
                      .+     . -.++|.|+.|.+.||+++..-||....+-.  ....+     +...++-      ..+..+++.+.+++..
T Consensus       426 ~PGp~avvny~kAD~WA~GalaYEIfg~~NPFY~rGem~--L~~r~-----Yqe~qLP------alp~~vpp~~rqlV~~  492 (598)
T KOG4158|consen  426 VPGPNAVVNYEKADTWAAGALAYEIFGRSNPFYKRGEML--LDTRT-----YQESQLP------ALPSRVPPVARQLVFD  492 (598)
T ss_pred             CCCCceeeccchhhhhhhhhhHHHHhccCCcccccchhe--echhh-----hhhhhCC------CCcccCChHHHHHHHH
Confidence            32     1 268999999999999999999998631111  01111     1222221      3455677889999999


Q ss_pred             cccCCCCCCC
Q 044568          240 CVQDEPALRP  249 (257)
Q Consensus       240 cl~~~p~~RP  249 (257)
                      .|+.||.+||
T Consensus       493 lL~r~pskRv  502 (598)
T KOG4158|consen  493 LLKRDPSKRV  502 (598)
T ss_pred             HhcCCccccC
Confidence            9999999999

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.74  E-value=1.5e-18  Score=153.82  Aligned_cols=204  Identities=16%  Similarity=0.123  Sum_probs=157.7

Q ss_pred             eeeecccCCCCCeeeccch-hhhHHHHhHhhhcccccccc-CCceeeeceeeeecCceeEEEeecCCCCHHHHHhccCCC
Q 044568            9 FYRSSFNARNSPWISRVSW-TADIEVLSVAMRGSKCTRIR-GGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSAER   86 (257)
Q Consensus         9 ~y~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~-h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~   86 (257)
                      .|+.+.........+...+ ..+..++.         ..+ |+.++++.-.++.+...+++++|..+|.|...+.  ...
T Consensus        24 ~yamkvl~k~t~~~~~~~~t~~er~il~---------~~~~~~f~v~lhyafqt~~kl~l~ld~~rgg~lft~l~--~~~   92 (612)
T KOG0603|consen   24 LYAMKVLKKATLKVRDRTHTKQERIILA---------FVHNTPFLVKLHYAFQTDGKLYLILDFLRGGDLFTRLS--KEV   92 (612)
T ss_pred             hhhhhcccccccccccccccccHHHHHh---------hccCCCceeeeeeeeccccchhHhhhhcccchhhhccc--cCC
Confidence            3444444444444444444 23333444         333 8999999999999999999999999999999987  566


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcccccCCCCccCcccccCC
Q 044568           87 NPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMAPECYKRT  166 (257)
Q Consensus        87 ~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~aPE~~~~~  166 (257)
                      .+.......+...++.|++++|+.   +++|+|+|++||+++.+|++++.|||+++..-.... .+||..|+|||+..  
T Consensus        93 ~f~~~~~~~~~aelaLald~lh~l---~iiyrd~k~enilld~~Ghi~~tdfglske~v~~~~-~cgt~eymApEI~~--  166 (612)
T KOG0603|consen   93 MFDELDVAFYLAELALALDHLHKL---GIAYRDYKLENVLLLLEGHIKLTDFGLSKEAVKEKI-ACGTYEYRAPEIIN--  166 (612)
T ss_pred             chHHHHHHHHHHHHHHHHhhcchh---HHHHhcccccceeecccCccccCCchhhhHhHhhhh-cccchhhhhhHhhh--
Confidence            778888889999999999999999   999999999999999999999999999875433222 28899999999998  


Q ss_pred             CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc-CCCCCHHHHHHHHHHHHHcccCCC
Q 044568          167 PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR-GTKVDKKNLENLVKVGLWCVQDEP  245 (257)
Q Consensus       167 ~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~cl~~~p  245 (257)
                      .....+|.||||++.+|+++|..||..+                    ....++. ...+|.......-.++..+...+|
T Consensus       167 gh~~a~D~ws~gvl~felltg~~pf~~~--------------------~~~~Il~~~~~~p~~l~~~a~~~~~~l~~r~p  226 (612)
T KOG0603|consen  167 GHLSAADWWSFGVLAFELLTGTLPFGGD--------------------TMKRILKAELEMPRELSAEARSLFRQLFKRNP  226 (612)
T ss_pred             ccCCcccchhhhhhHHHHhhCCCCCchH--------------------HHHHHhhhccCCchhhhHHHHHHHHHHHhhCH
Confidence            4578899999999999999999999741                    1112222 224556666667777778888888


Q ss_pred             CCCC
Q 044568          246 ALRP  249 (257)
Q Consensus       246 ~~RP  249 (257)
                      .+|.
T Consensus       227 ~nrL  230 (612)
T KOG0603|consen  227 ENRL  230 (612)
T ss_pred             HHHh
Confidence            8887

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.74  E-value=9.7e-19  Score=152.24  Aligned_cols=165  Identities=21%  Similarity=0.254  Sum_probs=128.9

Q ss_pred             ceeEEEeecCCCCHHHHHhcc-CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeeccc
Q 044568           63 VSGKIERPVRNGSLTDIIFCS-AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA  141 (257)
Q Consensus        63 ~~~lV~E~~~~gsL~~~l~~~-~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~  141 (257)
                      ..++.|++|..++|.++|.+. .....++...+.++.|++.|++|   +   +.+|+|++|.||....+..+||.|||+.
T Consensus       330 ~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~y---k---~~ihrdlkp~nif~~~d~q~kIgDFgl~  403 (516)
T KOG1033|consen  330 YLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEY---K---GLIHRDLKPSNIFFSDDDQLKIGDFGLV  403 (516)
T ss_pred             chhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhh---c---cchhhhccccccccccchhhhhhhhhhe
Confidence            578999999999999999632 44557788899999999999999   7   9999999999999999989999999987


Q ss_pred             ccCCC---------CcccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhh
Q 044568          142 KLPNE---------DFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCF  211 (257)
Q Consensus       142 ~~~~~---------~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~  211 (257)
                      .....         ..+...+|..|++||.+.+..|+.++||||+|++++|++. -..++...                 
T Consensus       404 ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~~f~T~~er~-----------------  466 (516)
T KOG1033|consen  404 TSQDKDETVAPAAASHTQQVGTLLYMSPEQIRGQQYSEKVDIYALGLILAELLIQFSTQFERI-----------------  466 (516)
T ss_pred             eecccCCcccchhhhhhhcccccccCCHHHHhhhhhhhhcchhhHHHHHHHHHHHhccHHHHH-----------------
Confidence            64322         2356688999999999999999999999999999999997 45554311                 


Q ss_pred             hhhhhhhhhcCCCCC---HHHHHHHHHHHHHcccCCCCCCC-hHHH
Q 044568          212 INRELNKLVRGTKVD---KKNLENLVKVGLWCVQDEPALRP-MKCA  253 (257)
Q Consensus       212 ~~~~~~~~~~~~~~~---~~~~~~l~~l~~~cl~~~p~~RP-~~ei  253 (257)
                        ....++-++. +|   ....+.-..|+.+++...|.+|| +.+.
T Consensus       467 --~t~~d~r~g~-ip~~~~~d~p~e~~ll~~lls~~p~~RP~~~~~  509 (516)
T KOG1033|consen  467 --ATLTDIRDGI-IPPEFLQDYPEEYTLLQQLLSPSPEERPSAIEV  509 (516)
T ss_pred             --HhhhhhhcCC-CChHHhhcCcHHHHHHHHhcCCCcccCchHHHH
Confidence              1111222211 11   11224456788899999999999 7654

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.74  E-value=1.2e-17  Score=132.76  Aligned_cols=124  Identities=14%  Similarity=0.115  Sum_probs=92.4

Q ss_pred             cccccceeeecccCCCCCeeeccchh-----h------------------------------hHHHHhHhhhcccccccc
Q 044568            3 CTKLSNFYRSSFNARNSPWISRVSWT-----A------------------------------DIEVLSVAMRGSKCTRIR   47 (257)
Q Consensus         3 ~~~~~~~y~~~~~~~~~~~i~~~~~~-----~------------------------------~~~~~~~~~~~~~~~~~~   47 (257)
                      .++++.||++...+++.+++|.....     +                              |.+.         +.++.
T Consensus         7 ~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~---------l~~l~   77 (190)
T cd05147           7 TGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRN---------LKRLV   77 (190)
T ss_pred             cccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHH---------HHHHH
Confidence            46899999999888889999875421     1                              2222         22444


Q ss_pred             CCceeeeceeeeecCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHH-hhCCCCCeeeccCCCCcee
Q 044568           48 GGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYL-HDECEPPILHCDIKPQNIL  126 (257)
Q Consensus        48 h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~l-h~~~~~~i~h~dl~~~nil  126 (257)
                      ++++ ..+..... ...+|||||++++++.....  ....++..+...++.|++.+|.++ |+.   +++|||+||+||+
T Consensus        78 ~~~v-~~p~~~~~-~~~~iVmE~i~g~~l~~~~~--~~~~~~~~~~~~i~~qi~~~L~~l~H~~---giiHrDlkP~NIl  150 (190)
T cd05147          78 TAGI-PCPEPILL-KSHVLVMEFIGDDGWAAPRL--KDAPLSESKARELYLQVIQIMRILYQDC---RLVHADLSEYNLL  150 (190)
T ss_pred             HCCC-CCCcEEEe-cCCEEEEEEeCCCCCcchhh--hcCCCCHHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEE
Confidence            4443 22222222 23489999999887766543  346789999999999999999999 798   9999999999999


Q ss_pred             eCCCCceEEeeeccccc
Q 044568          127 MDEFWTAKILDFGLAKL  143 (257)
Q Consensus       127 ~~~~~~~kl~dfg~~~~  143 (257)
                      +++ +.++|+|||++..
T Consensus       151 i~~-~~v~LiDFG~a~~  166 (190)
T cd05147         151 YHD-GKLYIIDVSQSVE  166 (190)
T ss_pred             EEC-CcEEEEEcccccc
Confidence            984 6899999999864

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.73  E-value=4.4e-17  Score=134.75  Aligned_cols=182  Identities=16%  Similarity=0.115  Sum_probs=144.8

Q ss_pred             cccccceeeec-ccCCCCCeeeccc-------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCC
Q 044568            3 CTKLSNFYRSS-FNARNSPWISRVS-------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNG   74 (257)
Q Consensus         3 ~~~~~~~y~~~-~~~~~~~~i~~~~-------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~g   74 (257)
                      |++|++.+.|+ +.+++.++||--.       +.-|-..+.  +.+      ..+.|=++.-.++.+-+-.||+|++ |-
T Consensus        38 eGsFG~lf~G~Nl~nne~VAIKfEPrkS~APQLrdEYr~YK--lL~------g~~GIP~vYYFGqeG~~NiLVidLL-GP  108 (449)
T KOG1165|consen   38 EGSFGVLFLGKNLYNNEPVAIKFEPRKSEAPQLRDEYRTYK--LLG------GTEGIPQVYYFGQEGKYNILVIDLL-GP  108 (449)
T ss_pred             cCcceeeecccccccCceEEEEeccccCCcchHHHHHHHHH--HHc------CCCCCCceeeeccccchhhhhhhhh-Cc
Confidence            88999999999 6677777886422       222333333  222      2344555666777888888999999 56


Q ss_pred             CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCC-----CceEEeeecccccCCCCc-
Q 044568           75 SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF-----WTAKILDFGLAKLPNEDF-  148 (257)
Q Consensus        75 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~-----~~~kl~dfg~~~~~~~~~-  148 (257)
                      ||+|+.. .-++.|+..++..++.|++.-++++|++   .+|+|||||+|+||+..     ..+.++|||+++...++. 
T Consensus       109 SLEDLFD-~CgR~FSvKTV~miA~Qmi~rie~vH~k---~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp~T  184 (449)
T KOG1165|consen  109 SLEDLFD-LCGRRFSVKTVAMIAKQMITRIEYVHEK---DLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRDPKT  184 (449)
T ss_pred             CHHHHHH-HhcCcccHHhHHHHHHHHHHHHHHHHhc---ceeecccCccceeecCCCCCCCceEEEEeccchhhhcCccc
Confidence            9999764 3788999999999999999999999999   99999999999999743     357899999998654333 


Q ss_pred             ---------ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCC
Q 044568          149 ---------VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASK  197 (257)
Q Consensus       149 ---------~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~  197 (257)
                               .+..||.+||+.....+...+.+.|+-|+|.+....+-|..||++--.+
T Consensus       185 kqHIPYrE~KSLsGTARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRGsLPWQGLKA~  242 (449)
T KOG1165|consen  185 KQHIPYREHKSLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAD  242 (449)
T ss_pred             cccCccccccccccceeeeEeeccccchhhhhhhHHHhhhhhhhhccCCCccccccCc
Confidence                     4557888999999999988899999999999999999999999976333

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.70  E-value=1e-16  Score=127.53  Aligned_cols=134  Identities=12%  Similarity=0.004  Sum_probs=93.0

Q ss_pred             cccccceeeecccCCCCCeeeccchh-----hhHHH-------------------Hh--HhhhccccccccCCceeeece
Q 044568            3 CTKLSNFYRSSFNARNSPWISRVSWT-----ADIEV-------------------LS--VAMRGSKCTRIRGGLLLNVPV   56 (257)
Q Consensus         3 ~~~~~~~y~~~~~~~~~~~i~~~~~~-----~~~~~-------------------~~--~~~~~~~~~~~~h~~i~~~~~   56 (257)
                      .++++.||+++..+++.+++|...-.     +..+.                   ..  ....-..+.++.++++.. +.
T Consensus         7 ~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~-p~   85 (190)
T cd05145           7 TGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGVPV-PE   85 (190)
T ss_pred             cCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCCCC-ce
Confidence            36789999999888889998865521     00000                   00  000111333555655421 22


Q ss_pred             eeeecCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhh-CCCCCeeeccCCCCceeeCCCCceEE
Q 044568           57 RAKLTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHD-ECEPPILHCDIKPQNILMDEFWTAKI  135 (257)
Q Consensus        57 ~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~dl~~~nil~~~~~~~kl  135 (257)
                      .... ...+|||||++++++.....  ....++..+...++.|++.++.++|+ +   |++|||+||.||+++ ++.++|
T Consensus        86 ~~~~-~~~~lVmE~~~g~~~~~~~l--~~~~~~~~~~~~i~~~l~~~l~~lH~~~---givHrDlkP~NIll~-~~~~~l  158 (190)
T cd05145          86 PILL-KKNVLVMEFIGDDGSPAPRL--KDVPLEEEEAEELYEQVVEQMRRLYQEA---GLVHGDLSEYNILYH-DGKPYI  158 (190)
T ss_pred             EEEe-cCCEEEEEEecCCCchhhhh--hhccCCHHHHHHHHHHHHHHHHHHHHhC---CEecCCCChhhEEEE-CCCEEE
Confidence            2211 23589999999886544422  33567888999999999999999999 8   999999999999998 789999


Q ss_pred             eeecccccC
Q 044568          136 LDFGLAKLP  144 (257)
Q Consensus       136 ~dfg~~~~~  144 (257)
                      +|||++...
T Consensus       159 iDFG~a~~~  167 (190)
T cd05145         159 IDVSQAVEL  167 (190)
T ss_pred             EEcccceec
Confidence            999998754

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.70  E-value=1.3e-17  Score=138.70  Aligned_cols=163  Identities=18%  Similarity=0.240  Sum_probs=109.6

Q ss_pred             ceeEEEeecCCCCHHHHHh---ccCCC--CCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEee
Q 044568           63 VSGKIERPVRNGSLTDIIF---CSAER--NPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILD  137 (257)
Q Consensus        63 ~~~lV~E~~~~gsL~~~l~---~~~~~--~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d  137 (257)
                      ..+++|+-+ .+||.+++.   .....  .+....+..+..|++..+++||+.   |++|+||+++|++++.+|.+.|+|
T Consensus       113 n~~~l~P~~-~~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~~---GlVHgdi~~~nfll~~~G~v~Lg~  188 (288)
T PF14531_consen  113 NRFLLMPRA-QGDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHSY---GLVHGDIKPENFLLDQDGGVFLGD  188 (288)
T ss_dssp             SEEEEEE---SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT---TEEEST-SGGGEEE-TTS-EEE--
T ss_pred             hhhhccchh-hhcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhhc---ceEecccceeeEEEcCCCCEEEcC
Confidence            336677777 468888864   21222  233344566779999999999999   999999999999999999999999


Q ss_pred             ecccccCCCCcccccCCCCccCcccccCC--------CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHH
Q 044568          138 FGLAKLPNEDFVIDKRDKGYMAPECYKRT--------PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYK  209 (257)
Q Consensus       138 fg~~~~~~~~~~~~~~~~~~~aPE~~~~~--------~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~  209 (257)
                      |+.....+........+..|.|||.....        .++.+.|.|++|+++|.++++..||....+......       
T Consensus       189 F~~~~r~g~~~~~~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~lWC~~lPf~~~~~~~~~~~-------  261 (288)
T PF14531_consen  189 FSSLVRAGTRYRCSEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITLYSLWCGRLPFGLSSPEADPEW-------  261 (288)
T ss_dssp             GGGEEETTEEEEGGGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHHHHHHHSS-STCCCGGGSTSGG-------
T ss_pred             hHHHeecCceeeccCCCcccCChhhhhhhcccCcccceeeeccCHHHHHHHHHHHHHccCCCCCCCccccccc-------
Confidence            99877666554445556779999976432        467889999999999999999999986522211100       


Q ss_pred             hhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCC
Q 044568          210 CFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALR  248 (257)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~R  248 (257)
                               .+.  .+. +.++.+..|+..+|+.+|++|
T Consensus       262 ---------~f~--~C~-~~Pe~v~~LI~~lL~~~~~~R  288 (288)
T PF14531_consen  262 ---------DFS--RCR-DMPEPVQFLIRGLLQRNPEDR  288 (288)
T ss_dssp             ---------GGT--TSS----HHHHHHHHHHT-SSGGGS
T ss_pred             ---------cch--hcC-CcCHHHHHHHHHHccCCcccC
Confidence                     111  233 667888999999999999988

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.67  E-value=1.2e-16  Score=129.21  Aligned_cols=149  Identities=12%  Similarity=0.041  Sum_probs=105.5

Q ss_pred             ccccceeeecccCCCCCeeeccc------------------hhhhHHHHhHhhhccccccccCCceeeeceeeee-----
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS------------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL-----   60 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~------------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~-----   60 (257)
                      ++++.||...- ++...++|...                  +.++++.         +.++.|+++......+..     
T Consensus        42 ~~f~~v~l~~~-~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~---------l~rL~~~GI~~~~d~~~~~~~~~  111 (232)
T PRK10359         42 IDDTKVSLIDT-DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQ---------TDRVRSEGLASLNDFYLLAERKT  111 (232)
T ss_pred             CCceEEEEEec-CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHH---------HHHHHHCCCCcceEeeeeccccc
Confidence            57888888544 56778888764                  1222222         336778887766655442     


Q ss_pred             ---cCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEee
Q 044568           61 ---TSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILD  137 (257)
Q Consensus        61 ---~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d  137 (257)
                         .+..+|||||++|.+|.++..      ++.    ....+++.++..+|+.   |++|+|++|+|++++.++ ++++|
T Consensus       112 ~~~~~~~~lvmEyi~G~tL~~~~~------~~~----~~~~~i~~~l~~lH~~---gi~H~Dikp~Nili~~~g-i~liD  177 (232)
T PRK10359        112 LRYAHTYIMLIEYIEGVELNDMPE------ISE----DVKAKIKASIESLHQH---GMVSGDPHKGNFIVSKNG-LRIID  177 (232)
T ss_pred             ccccCCeEEEEEEECCccHHHhhh------ccH----HHHHHHHHHHHHHHHc---CCccCCCChHHEEEeCCC-EEEEE
Confidence               245789999999999988742      222    3456999999999999   999999999999999888 99999


Q ss_pred             ecccccCCCCcccccCCCCccCcccccCCCCCccccchhHHHHHHHHH
Q 044568          138 FGLAKLPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETI  185 (257)
Q Consensus       138 fg~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~  185 (257)
                      ||..........         ...+.....++.++|+||||+.+.-..
T Consensus       178 fg~~~~~~e~~a---------~d~~vler~y~~~~di~~lg~~~~~~~  216 (232)
T PRK10359        178 LSGKRCTAQRKA---------KDRIDLERHYGIKNEIKDLGYYLLIYK  216 (232)
T ss_pred             CCCcccccchhh---------HHHHHHHhHhcccccccceeEeehHHH
Confidence            998754321110         011333445678999999998876543

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.62  E-value=3.9e-15  Score=118.35  Aligned_cols=143  Identities=14%  Similarity=0.022  Sum_probs=100.6

Q ss_pred             hhhhHHHHhHhhhccccccccC-CceeeeceeeeecCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHH
Q 044568           27 WTADIEVLSVAMRGSKCTRIRG-GLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGIL  105 (257)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~h-~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~  105 (257)
                      +.+|++.+.         ++.| +++.++..+    +..+++|||+.|.+|.+.+..         ....++.|++.++.
T Consensus        48 ~~rE~~iL~---------~L~~~~~vP~ll~~----~~~~lvmeyI~G~~L~~~~~~---------~~~~~~~qi~~~L~  105 (218)
T PRK12274         48 ARREALALR---------QLDGLPRTPRLLHW----DGRHLDRSYLAGAAMYQRPPR---------GDLAYFRAARRLLQ  105 (218)
T ss_pred             HHHHHHHHH---------hcCCCCCCCEEEEE----cCEEEEEeeecCccHHhhhhh---------hhHHHHHHHHHHHH
Confidence            356666666         4433 444444443    456999999999998765421         12357889999999


Q ss_pred             HHhhCCCCCeeeccC-CCCceeeCCCCceEEeeecccccCCCCcc----------------cccCCCCccCcccccCC-C
Q 044568          106 YLHDECEPPILHCDI-KPQNILMDEFWTAKILDFGLAKLPNEDFV----------------IDKRDKGYMAPECYKRT-P  167 (257)
Q Consensus       106 ~lh~~~~~~i~h~dl-~~~nil~~~~~~~kl~dfg~~~~~~~~~~----------------~~~~~~~~~aPE~~~~~-~  167 (257)
                      ++|++   |++|||| ||.||+++.++.++|+|||++........                ....++.++.|+...-- .
T Consensus       106 ~lH~~---GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~~~~~~~r~L~~rDl~~llk~~~~y~~~~l~~~~~~~l~~  182 (218)
T PRK12274        106 QLHRC---GVAHNDLAKEANWLVQEDGSPAVIDFQLAVRGNPRARWMRLLAREDLRHLLKHKRMYCPAALTPVERRVLKR  182 (218)
T ss_pred             HHHHC---cCccCCCCCcceEEEcCCCCEEEEECCCceecCCcchHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhhcc
Confidence            99999   9999999 79999999999999999999975443321                11223445555432211 2


Q ss_pred             CC-ccccchhHHHHHHHHHhcCCCCCcC
Q 044568          168 IS-VKADVYGYGIVLLETICCRKNMEID  194 (257)
Q Consensus       168 ~~-~~~Di~s~G~~l~el~~g~~pf~~~  194 (257)
                      .+ ...++++-|..+|.++|+..|.-++
T Consensus       183 ~~~~~~~w~~~g~~~~~~~~~~~~~~~~  210 (218)
T PRK12274        183 TSWIRELWFATGKPVYRFVTRRVLHWED  210 (218)
T ss_pred             chhHHHHHHHhcchHHHHHhccCCcccc
Confidence            33 5678888999999999999987655

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.61  E-value=1.4e-15  Score=143.33  Aligned_cols=178  Identities=15%  Similarity=0.164  Sum_probs=136.9

Q ss_pred             ccccceeeecccCCCCCeeeccchhhhHHHH-hHhhhcccccccc---CCceeeeceeeeecCceeEEEeecCCCCHHHH
Q 044568            4 TKLSNFYRSSFNARNSPWISRVSWTADIEVL-SVAMRGSKCTRIR---GGLLLNVPVRAKLTSVSGKIERPVRNGSLTDI   79 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~---h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~   79 (257)
                      +..+-||+|+..+++.+++|.-.=++-.+++ ..++..    |++   -+.|..+.......+...||+||.+.|+|.++
T Consensus       709 g~y~~vy~a~~~~~~~~alK~e~P~~~WEfYI~~q~~~----RLk~~~~~~~~~~~~a~~~~~~S~lv~ey~~~Gtlld~  784 (974)
T KOG1166|consen  709 GSYGSVYVATHSNGKLVALKVEKPPNPWEFYICLQVME----RLKPQMLPSIMHISSAHVFQNASVLVSEYSPYGTLLDL  784 (974)
T ss_pred             ccceEEEEeecCCCcEEEEEeecCCCceeeeehHHHHH----hhchhhhcchHHHHHHHccCCcceeeeeccccccHHHh
Confidence            3567899999999999999864422222211 111111    222   12333444444456778899999999999999


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeC-------CCCceEEeeeccccc----CCC-C
Q 044568           80 IFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD-------EFWTAKILDFGLAKL----PNE-D  147 (257)
Q Consensus        80 l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~-------~~~~~kl~dfg~~~~----~~~-~  147 (257)
                      +.  ..+.+++..+..++.|++.-+++||..   +|||+||||+|+++.       +...++|+|||.+.-    .+. .
T Consensus       785 ~N--~~~~m~e~lv~~~~~qml~ive~lH~~---~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~siDm~lfp~~~~  859 (974)
T KOG1166|consen  785 IN--TNKVMDEYLVMFFSCQMLRIVEHLHAM---GIIHGDIKPDNFLLRREICADSDSKGLYLIDFGRSIDMKLFPDGTK  859 (974)
T ss_pred             hc--cCCCCCchhhhHHHHHHHHHHHHHHhc---ceecccCCcceeEeecccCCCCcccceEEEecccceeeeEcCCCcE
Confidence            98  778899999999999999999999999   999999999999995       345689999998752    222 2


Q ss_pred             cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCC
Q 044568          148 FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKN  190 (257)
Q Consensus       148 ~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~p  190 (257)
                      .....+|-.+-.+|+..+.+++..+|.|.++.+++-|+.|+..
T Consensus       860 F~~~~~td~f~C~EM~~grpWtYq~DyfGlAa~~h~mLFG~y~  902 (974)
T KOG1166|consen  860 FKAVWHTDLFDCIEMREGRPWTYQIDYFGLAATVHVMLFGKYM  902 (974)
T ss_pred             EeeeeccccchhHHHhcCCCCchhhhhHHHHHHHHHHHHHHHH
Confidence            3455667789999999999999999999999999999998754

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=99.59  E-value=2.4e-15  Score=124.49  Aligned_cols=194  Identities=19%  Similarity=0.219  Sum_probs=135.7

Q ss_pred             ccccccCCceeeeceeeeec-----CceeEEEeecCCCCHHHHHhcc--CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCC
Q 044568           42 KCTRIRGGLLLNVPVRAKLT-----SVSGKIERPVRNGSLTDIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPP  114 (257)
Q Consensus        42 ~~~~~~h~~i~~~~~~~~~~-----~~~~lV~E~~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~  114 (257)
                      .+..+.|.|++++.-++.+.     ....++.|||..|++.++|++.  ....+......+|+.||.+||.|||+. +|.
T Consensus       120 nllqlvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs~-~Pp  198 (458)
T KOG1266|consen  120 NLLQLVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHSC-DPP  198 (458)
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhcc-CCc
Confidence            56677799999888777643     3567899999999999999854  345677788889999999999999996 999


Q ss_pred             eeeccCCCCceeeCCCCceEEeeeccccc-CC------CCcccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhc
Q 044568          115 ILHCDIKPQNILMDEFWTAKILDFGLAKL-PN------EDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICC  187 (257)
Q Consensus       115 i~h~dl~~~nil~~~~~~~kl~dfg~~~~-~~------~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g  187 (257)
                      |+|+++..+.+.+..++.+|+....-... ..      .......+.++|.+||+=.....+.++|||+||....||..+
T Consensus       199 iihgnlTc~tifiq~ngLIkig~~ap~s~h~s~~~~~~~Ek~~~~~~~g~~a~~sg~~tn~~~a~dIy~fgmcAlemail  278 (458)
T KOG1266|consen  199 IIHGNLTCDTIFIQHNGLIKIGSVAPDSTHPSVNSTREAEKSVNTSLPGFSAPESGTTTNTTGASDIYKFGMCALEMAIL  278 (458)
T ss_pred             cccCCcchhheeecCCceEEecccCccccchhhhhhhHhhhhccccCCccccCCcCcccccccchhhhhhhHHHHHHHHh
Confidence            99999999999999988888744221111 00      001222345678899987666778899999999999999987


Q ss_pred             CCCCCcCCCCh-hhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHH
Q 044568          188 RKNMEIDASKP-EEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAV  254 (257)
Q Consensus       188 ~~pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~  254 (257)
                      ..-.....+.- .+....+.         +..+-+         ..-..++..|++-.|..|| |++++
T Consensus       279 Eiq~tnseS~~~~ee~ia~~---------i~~len---------~lqr~~i~kcl~~eP~~rp~ar~ll  329 (458)
T KOG1266|consen  279 EIQSTNSESKVEVEENIANV---------IIGLEN---------GLQRGSITKCLEGEPNGRPDARLLL  329 (458)
T ss_pred             eeccCCCcceeehhhhhhhh---------eeeccC---------ccccCcCcccccCCCCCCcchhhhh
Confidence            76433221111 11111110         000001         1123455689999999999 99875

>smart00090 RIO RIO-like kinase

Probab=99.56  E-value=1.9e-14  Score=118.23  Aligned_cols=131  Identities=14%  Similarity=0.084  Sum_probs=89.0

Q ss_pred             ccccceeeec--ccCCCCCeeeccchhh-------------------------hHHHHhHhhhccccccccCCceeeece
Q 044568            4 TKLSNFYRSS--FNARNSPWISRVSWTA-------------------------DIEVLSVAMRGSKCTRIRGGLLLNVPV   56 (257)
Q Consensus         4 ~~~~~~y~~~--~~~~~~~~i~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~h~~i~~~~~   56 (257)
                      ++++.||++.  ..++..+++|......                         +++... ...-..+.++.+ +.+.++.
T Consensus        39 G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~E~~~L~~L~~-~~i~~p~  116 (237)
T smart00090       39 GKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWA-EKEFRNLQRLYE-AGVPVPK  116 (237)
T ss_pred             CcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHH-HHHHHHHHHHHh-cCCCCCe
Confidence            5789999998  6788888888654211                         000000 000001123322 1222232


Q ss_pred             eeeecCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCC-eeeccCCCCceeeCCCCceEE
Q 044568           57 RAKLTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPP-ILHCDIKPQNILMDEFWTAKI  135 (257)
Q Consensus        57 ~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~-i~h~dl~~~nil~~~~~~~kl  135 (257)
                      .... ...+|||||+++++|.....  ....+...+...++.|++.++.+||++   + ++|+|++|+||+++ ++.+++
T Consensus       117 ~~~~-~~~~lV~E~~~g~~L~~~~~--~~~~~~~~~~~~i~~qi~~~l~~LH~~---g~iiH~Dikp~NIli~-~~~i~L  189 (237)
T smart00090      117 PIAW-RRNVLVMEFIGGDGLPAPRL--KDVEPEEEEEFELYDDILEEMRKLYKE---GELVHGDLSEYNILVH-DGKVVI  189 (237)
T ss_pred             eeEe-cCceEEEEEecCCccccccc--ccCCcchHHHHHHHHHHHHHHHHHHhc---CCEEeCCCChhhEEEE-CCCEEE
Confidence            2222 34589999999988877653  233456667789999999999999999   9 99999999999999 779999


Q ss_pred             eeeccccc
Q 044568          136 LDFGLAKL  143 (257)
Q Consensus       136 ~dfg~~~~  143 (257)
                      +|||.+..
T Consensus       190 iDFg~a~~  197 (237)
T smart00090      190 IDVSQSVE  197 (237)
T ss_pred             EEChhhhc
Confidence            99998764

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.56  E-value=2.3e-14  Score=115.52  Aligned_cols=120  Identities=18%  Similarity=0.196  Sum_probs=92.3

Q ss_pred             ccccceeeecccCCCCCeeeccc-----------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeE
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS-----------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGK   66 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~-----------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~l   66 (257)
                      +.++.||+|.. .+..+++|...                 +.+|++.+.         .+.|+++......+...+..++
T Consensus         7 G~~~~vy~~~~-~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~---------~l~~~~i~~p~~~~~~~~~~~l   76 (211)
T PRK14879          7 GAEAEIYLGDF-LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMS---------RARKAGVNVPAVYFVDPENFII   76 (211)
T ss_pred             CceEEEEEEee-CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHH---------HHHHCCCCCCeEEEEeCCCCEE
Confidence            67899999987 56667777422                 122333333         5556665544445556778899


Q ss_pred             EEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeeccccc
Q 044568           67 IERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKL  143 (257)
Q Consensus        67 V~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~  143 (257)
                      ||||++|++|.+.+...     .. ....++.+++.++.++|+.   +++|+|++|.||+++ ++.++++|||.+..
T Consensus        77 v~e~~~G~~L~~~~~~~-----~~-~~~~i~~~i~~~l~~lH~~---~i~H~Dl~p~Nil~~-~~~~~liDf~~a~~  143 (211)
T PRK14879         77 VMEYIEGEPLKDLINSN-----GM-EELELSREIGRLVGKLHSA---GIIHGDLTTSNMILS-GGKIYLIDFGLAEF  143 (211)
T ss_pred             EEEEeCCcCHHHHHHhc-----cH-HHHHHHHHHHHHHHHHHhC---CcccCCCCcccEEEE-CCCEEEEECCcccC
Confidence            99999999999998631     12 7789999999999999999   999999999999999 67899999998763

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.54  E-value=4.2e-14  Score=113.05  Aligned_cols=117  Identities=20%  Similarity=0.204  Sum_probs=86.8

Q ss_pred             ccccceeeecccCCCCCeeeccc-----------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeE
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS-----------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGK   66 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~-----------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~l   66 (257)
                      ++++.||+|.+ ++..+++|...                 +.+|++.+.         .+.|.++..........+..++
T Consensus         5 G~~~~vy~~~~-~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~---------~l~~~~i~~p~~~~~~~~~~~l   74 (199)
T TIGR03724         5 GAEAIIYLGDF-LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLS---------RARKAGVNTPVVYDVDPDNKTI   74 (199)
T ss_pred             CceEEEEEeec-CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHH---------HHHHCCCCCCEEEEEECCCCEE
Confidence            57899999985 45667776522                 112333333         4445544333334445667799


Q ss_pred             EEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeeccccc
Q 044568           67 IERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKL  143 (257)
Q Consensus        67 V~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~  143 (257)
                      ||||++|++|.+.+...  ..       .++.+++.+|.++|+.   +++|+|++|.||+++ ++.++++|||.+..
T Consensus        75 v~e~~~g~~l~~~~~~~--~~-------~~~~~i~~~l~~lH~~---gi~H~Dl~~~Nil~~-~~~~~liDfg~a~~  138 (199)
T TIGR03724        75 VMEYIEGKPLKDVIEEG--ND-------ELLREIGRLVGKLHKA---GIVHGDLTTSNIIVR-DDKLYLIDFGLGKY  138 (199)
T ss_pred             EEEEECCccHHHHHhhc--HH-------HHHHHHHHHHHHHHHC---CeecCCCCcceEEEE-CCcEEEEECCCCcC
Confidence            99999999999988531  11       7899999999999999   999999999999999 78999999998764

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PRK10345 hypothetical protein; Provisional

Probab=99.53  E-value=7.5e-14  Score=112.26  Aligned_cols=124  Identities=17%  Similarity=0.052  Sum_probs=89.5

Q ss_pred             ccccceeeecccCCCCCeeeccc---------hhhhHHHHhHhhhccccccccCCceeeeceeeeecC---c-eeEEEee
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS---------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTS---V-SGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~---~-~~lV~E~   70 (257)
                      +.++.||.  ..+....+||...         +.+|++.+....+.    ...|+||+++.+.+....   . ..+|+||
T Consensus        13 G~~~~Vy~--hp~~~~k~IKv~~~~~~~~~~~~~rEi~~l~~L~~~----~~~h~nIvr~yg~~et~~g~g~v~~~I~e~   86 (210)
T PRK10345         13 GRHRKCYA--HPEDAQRCIKIVYHRGDGGDKEIRRELKYYAHLSRR----LIDWSGIPRYYGTVETDCGTGYVYDVIADF   86 (210)
T ss_pred             CCceEEEE--CCCCcCeEEEEEeccccchHHHHHHHHHHHHHhhcc----CCCCcccceeeEEEEeCCCCeEEEEEEecC
Confidence            46788886  4344444676433         46677766622111    246899999999998864   3 3378999


Q ss_pred             --cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHH-HHHhhCCCCCeeeccCCCCceeeCC----CCceEEeeeccc
Q 044568           71 --VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGI-LYLHDECEPPILHCDIKPQNILMDE----FWTAKILDFGLA  141 (257)
Q Consensus        71 --~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l-~~lh~~~~~~i~h~dl~~~nil~~~----~~~~kl~dfg~~  141 (257)
                        +.+|+|.+++.+   ..+++.  ..++.|++.++ +|||++   +|+||||||+||+++.    +..++|+|++.+
T Consensus        87 ~G~~~~tL~~~l~~---~~~~e~--~~~~~~~L~~l~~yLh~~---~IvhrDlKp~NILl~~~~~~~~~~~LiDg~G~  156 (210)
T PRK10345         87 DGKPSITLTEFAEQ---CRYEED--VAQLRQLLKKLKRYLLDN---RIVTMELKPQNILCQRISESEVIPVVCDNIGE  156 (210)
T ss_pred             CCCcchhHHHHHHc---ccccHh--HHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEeccCCCCCcEEEEECCCC
Confidence              557999999964   246554  46678888777 999999   9999999999999973    347999995443

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.52  E-value=6e-14  Score=128.41  Aligned_cols=117  Identities=18%  Similarity=0.217  Sum_probs=91.3

Q ss_pred             ccccceeeecccCCCCCeeeccc----------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEE
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS----------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~----------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV   67 (257)
                      ++++.||++.+..+...+.+...                +.+|++.+.         .++|++++.........+..++|
T Consensus       344 G~~g~Vy~~~~~~~~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~---------~l~~~~i~~p~~~~~~~~~~~lv  414 (535)
T PRK09605        344 GAEADIKKGEYLGRDAVIKERVPKGYRHPELDERLRTERTRAEARLLS---------EARRAGVPTPVIYDVDPEEKTIV  414 (535)
T ss_pred             CCcEEEEEEeecCccceeEEEecccccchhHHHHHHHHHHHHHHHHHH---------hhcccCCCeeEEEEEeCCCCEEE
Confidence            56899999987666544322111                223333333         67788877666666667788999


Q ss_pred             EeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeeccccc
Q 044568           68 ERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKL  143 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~  143 (257)
                      |||+++++|.+++.          ....++.+++.++.+||+.   +++|||+||+||++ .++.++++|||+++.
T Consensus       415 ~E~~~g~~L~~~l~----------~~~~~~~~i~~~L~~lH~~---giiHrDlkp~NILl-~~~~~~liDFGla~~  476 (535)
T PRK09605        415 MEYIGGKDLKDVLE----------GNPELVRKVGEIVAKLHKA---GIVHGDLTTSNFIV-RDDRLYLIDFGLGKY  476 (535)
T ss_pred             EEecCCCcHHHHHH----------HHHHHHHHHHHHHHHHHhC---CCccCCCChHHEEE-ECCcEEEEeCccccc
Confidence            99999999999884          3567899999999999999   99999999999999 567999999999864

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.51  E-value=1.4e-14  Score=135.16  Aligned_cols=134  Identities=22%  Similarity=0.268  Sum_probs=103.5

Q ss_pred             HHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc------------------ccccCCCCccCccc
Q 044568          101 AKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF------------------VIDKRDKGYMAPEC  162 (257)
Q Consensus       101 ~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~------------------~~~~~~~~~~aPE~  162 (257)
                      +.+++|+|+-   +|+|||+||+|.++..-|++|+.|||+.+......                  ..-.+|+.|.|||+
T Consensus       153 vla~Eylh~y---givhrdlkpdnllIT~mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPeV  229 (1205)
T KOG0606|consen  153 VLAVEYLHSY---GIVHRDLKPDNLLITSMGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPEV  229 (1205)
T ss_pred             hHHhHhhccC---CeecCCCCCCcceeeecccccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCccccChhh
Confidence            7899999999   99999999999999999999999999987532111                  33478999999999


Q ss_pred             ccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHccc
Q 044568          163 YKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQ  242 (257)
Q Consensus       163 ~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~  242 (257)
                      +....|...+|+|++|+++||.+.|..||.++.+++   .+..+..         +.+.-.+-+....++...++.+.|+
T Consensus       230 ilrqgygkpvdwwamGiIlyeFLVgcvpffGdtpee---lfg~vis---------d~i~wpE~dea~p~Ea~dli~~LL~  297 (1205)
T KOG0606|consen  230 ILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEE---LFGQVIS---------DDIEWPEEDEALPPEAQDLIEQLLR  297 (1205)
T ss_pred             hhhhccCCCccHHHHHHHHHHHheeeeeccCCCHHH---HHhhhhh---------hhccccccCcCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999998773332   1221111         1111111133344667788889999


Q ss_pred             CCCCCCC
Q 044568          243 DEPALRP  249 (257)
Q Consensus       243 ~~p~~RP  249 (257)
                      .+|..|-
T Consensus       298 qnp~~Rl  304 (1205)
T KOG0606|consen  298 QNPLCRL  304 (1205)
T ss_pred             hChHhhc
Confidence            9999997

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.45  E-value=5e-13  Score=106.88  Aligned_cols=128  Identities=14%  Similarity=0.044  Sum_probs=86.3

Q ss_pred             cccccceeeecccCCCCCeeeccchhh-----h---HHHHh--------------HhhhccccccccCCceeeeceeeee
Q 044568            3 CTKLSNFYRSSFNARNSPWISRVSWTA-----D---IEVLS--------------VAMRGSKCTRIRGGLLLNVPVRAKL   60 (257)
Q Consensus         3 ~~~~~~~y~~~~~~~~~~~i~~~~~~~-----~---~~~~~--------------~~~~~~~~~~~~h~~i~~~~~~~~~   60 (257)
                      .+.++.||++...+++.+++|......     .   .+...              ....-..+..+.+.++ .++... .
T Consensus        25 ~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i-~v~~~~-~  102 (198)
T cd05144          25 VGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEEGF-PVPKPI-D  102 (198)
T ss_pred             cCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHcCC-CCCcee-e
Confidence            367899999998888889998533210     0   00000              0000001223333321 112111 1


Q ss_pred             cCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecc
Q 044568           61 TSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGL  140 (257)
Q Consensus        61 ~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~  140 (257)
                      ....++||||+++++|.+....        .....++.+++.++.++|+.   +++|+|++|.||+++.++.++|+|||.
T Consensus       103 ~~~~~lv~e~~~g~~L~~~~~~--------~~~~~~~~~i~~~l~~lh~~---gi~H~Dl~p~Nill~~~~~~~liDfg~  171 (198)
T cd05144         103 WNRHAVVMEYIDGVELYRVRVL--------EDPEEVLDEILEEIVKAYKH---GIIHGDLSEFNILVDDDEKIYIIDWPQ  171 (198)
T ss_pred             cCCceEEEEEeCCcchhhcccc--------ccHHHHHHHHHHHHHHHHHC---CCCcCCCCcccEEEcCCCcEEEEECCc
Confidence            2455899999999999876431        33567889999999999999   999999999999999999999999998


Q ss_pred             ccc
Q 044568          141 AKL  143 (257)
Q Consensus       141 ~~~  143 (257)
                      +..
T Consensus       172 ~~~  174 (198)
T cd05144         172 MVS  174 (198)
T ss_pred             ccc
Confidence            853

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.38  E-value=8.2e-14  Score=128.03  Aligned_cols=192  Identities=20%  Similarity=0.197  Sum_probs=148.5

Q ss_pred             CCceeeeceeeeecCceeEEEeecCCCCHHHHHhccCCC-CCCHHHHHHHHHHHHHHHHHHh-hCCCCCeeeccCCCCce
Q 044568           48 GGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSAER-NPYWNQRVRIALDVAKGILYLH-DECEPPILHCDIKPQNI  125 (257)
Q Consensus        48 h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~-~l~~~~~~~~~~~i~~~l~~lh-~~~~~~i~h~dl~~~ni  125 (257)
                      |.|++..++.....+..++++||..+|++.+.+.. .+. .++...+..++.|+..++.|+| ..   ++.|+|++|+|.
T Consensus        80 h~n~~~~~~~~~~~~~~~~~~~~s~g~~~f~~i~~-~~~~~~~~~~~~~~~~ql~s~l~~~H~~~---~~~h~~ikP~n~  155 (601)
T KOG0590|consen   80 HSNTVHMIEPSSSPRSYLLSLSYSDGGSLFSKISH-PDSTGTSSSSASRYLPQLNSGLSYLHPEN---GVTHRDIKPSNS  155 (601)
T ss_pred             cccccccCCccCCCcccccccCccccccccccccc-CCccCCCCcchhhhhhhhccCccccCccc---ccccCCCCCccc
Confidence            99999999999999999999999999999999943 333 6777889999999999999999 88   999999999999


Q ss_pred             eeCCCC-ceEEeeecccccCCC-C-----cccccC-CCCccCcccccCCCC-CccccchhHHHHHHHHHhcCCCCCcCCC
Q 044568          126 LMDEFW-TAKILDFGLAKLPNE-D-----FVIDKR-DKGYMAPECYKRTPI-SVKADVYGYGIVLLETICCRKNMEIDAS  196 (257)
Q Consensus       126 l~~~~~-~~kl~dfg~~~~~~~-~-----~~~~~~-~~~~~aPE~~~~~~~-~~~~Di~s~G~~l~el~~g~~pf~~~~~  196 (257)
                      +++..+ ..+++|||++..... .     .....| ++.|.+||...+..+ .+..|+||.|+++.-+++|..|+.....
T Consensus       156 ~l~~s~~~l~~~df~~At~~~~~~g~~~~~~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S~g~~l~~~~~g~~p~~~~~~  235 (601)
T KOG0590|consen  156 LLDESGSALKIADFGLATAYRNKNGAERSLKDRCGSSPPYGAPEHLSGKAYRGPSVDVWSLGIVLSAMLTGELPWDFPSR  235 (601)
T ss_pred             hhccCCCcccCCCchhhccccccCCcceeeecccCCCCCCCCcccccchhhcCCCcccccccccccccccCCCCcccccc
Confidence            999999 999999999875433 1     144566 889999999988544 5778999999999999999999986643


Q ss_pred             ChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHH
Q 044568          197 KPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCA  253 (257)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei  253 (257)
                      ....  ...|...     .  .. ..............+++..++..+|..|. .+++
T Consensus       236 ~~~~--~~~~~~~-----~--~~-~~~~~~~~~~~~~~~~l~k~l~~~~~~r~s~~~~  283 (601)
T KOG0590|consen  236 KDGR--YSSWKSN-----K--GR-FTQLPWNSISDQAHDLLHKILKENPSNRLSIEEL  283 (601)
T ss_pred             cccc--ceeeccc-----c--cc-cccCccccCChhhhhcccccccCCchhccccccc
Confidence            3311  1111100     0  00 00012223345567777788889999998 7765

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.31  E-value=2e-11  Score=100.45  Aligned_cols=69  Identities=19%  Similarity=0.224  Sum_probs=59.0

Q ss_pred             eEEEeecCC-CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeeccccc
Q 044568           65 GKIERPVRN-GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKL  143 (257)
Q Consensus        65 ~lV~E~~~~-gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~  143 (257)
                      ++|||++++ .+|.+++.+   ..++..    .+.+++.++.+||++   ||+|+|++|.|||++.++.++|+|||.+..
T Consensus       122 ~lV~e~l~G~~~L~~~l~~---~~l~~~----~~~~i~~~l~~lH~~---GI~HrDlkp~NILv~~~~~v~LIDfg~~~~  191 (239)
T PRK01723        122 DILIERIEGARDLVALLQE---APLSEE----QWQAIGQLIARFHDA---GVYHADLNAHNILLDPDGKFWLIDFDRGEL  191 (239)
T ss_pred             eEEEEecCCCCCHHHHHhc---CCCCHH----HHHHHHHHHHHHHHC---CCCCCCCCchhEEEcCCCCEEEEECCCccc
Confidence            599999997 699999853   345543    357899999999999   999999999999999888999999998764

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.29  E-value=1.5e-11  Score=97.22  Aligned_cols=76  Identities=13%  Similarity=0.040  Sum_probs=59.2

Q ss_pred             CceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhh-CCCCCeeeccCCCCceeeCCCCceEEeeecc
Q 044568           62 SVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHD-ECEPPILHCDIKPQNILMDEFWTAKILDFGL  140 (257)
Q Consensus        62 ~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~  140 (257)
                      ...++||||++++++......  ..... .++..++.+++.++.++|. .   +++|+|++|+||+++ ++.++++|||.
T Consensus        88 ~~~~lv~e~~~g~~~~~~~l~--~~~~~-~~~~~~~~~~~~~l~~lh~~~---~ivH~Dl~p~Nili~-~~~~~liDfg~  160 (187)
T cd05119          88 NRHVLVMEFIGGDGIPAPRLK--DVRLL-EDPEELYDQILELMRKLYREA---GLVHGDLSEYNILVD-DGKVYIIDVPQ  160 (187)
T ss_pred             CCCEEEEEEeCCCCccChhhh--hhhhc-ccHHHHHHHHHHHHHHHhhcc---CcCcCCCChhhEEEE-CCcEEEEECcc
Confidence            346899999998544322110  00111 6678899999999999999 8   999999999999999 88999999999


Q ss_pred             cccC
Q 044568          141 AKLP  144 (257)
Q Consensus       141 ~~~~  144 (257)
                      +...
T Consensus       161 a~~~  164 (187)
T cd05119         161 AVEI  164 (187)
T ss_pred             cccc
Confidence            8643

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.26  E-value=3.9e-11  Score=90.63  Aligned_cols=120  Identities=17%  Similarity=0.132  Sum_probs=90.2

Q ss_pred             ccccceeeecccCCCCCeeeccc-------hhhhHHHHhHhhhccccccccC--CceeeeceeeeecCceeEEEeecCCC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS-------WTADIEVLSVAMRGSKCTRIRG--GLLLNVPVRAKLTSVSGKIERPVRNG   74 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~-------~~~~~~~~~~~~~~~~~~~~~h--~~i~~~~~~~~~~~~~~lV~E~~~~g   74 (257)
                      +.++.+|+++..+ ...++|...       +.+|.+.+.         .+.+  ..+.++.......+..+++|||++++
T Consensus         9 g~~~~v~~~~~~~-~~~~iK~~~~~~~~~~~~~e~~~~~---------~l~~~~~~~p~~~~~~~~~~~~~~v~e~~~g~   78 (155)
T cd05120           9 GLTNRVYLLGTKD-EDYVLKINPSREKGADREREVAILQ---------LLARKGLPVPKVLASGESDGWSYLLMEWIEGE   78 (155)
T ss_pred             ccccceEEEEecC-CeEEEEecCCCCchhHHHHHHHHHH---------HHHHcCCCCCeEEEEcCCCCccEEEEEecCCe
Confidence            4578899999766 566666542       445555554         3333  35556666666667899999999887


Q ss_pred             CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccc
Q 044568           75 SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK  142 (257)
Q Consensus        75 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~  142 (257)
                      ++...         +......++.+++.++.++|.....+++|+|++|.|+++++.+.++++||+.+.
T Consensus        79 ~~~~~---------~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~  137 (155)
T cd05120          79 TLDEV---------SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAG  137 (155)
T ss_pred             ecccC---------CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEeccccc
Confidence            76654         456677889999999999999522369999999999999998899999999875

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.16  E-value=1.9e-10  Score=102.63  Aligned_cols=92  Identities=23%  Similarity=0.162  Sum_probs=68.9

Q ss_pred             CCceeeeceeeee-cCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHH-HHHHHhhCCCCCeeeccCCCCce
Q 044568           48 GGLLLNVPVRAKL-TSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAK-GILYLHDECEPPILHCDIKPQNI  125 (257)
Q Consensus        48 h~~i~~~~~~~~~-~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~-~l~~lh~~~~~~i~h~dl~~~ni  125 (257)
                      +.+-+.++..+.. .+..+|||||++|++|.+.... .....   ....++.+++. .+..+|..   |++|+|++|.||
T Consensus       216 ~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~~-~~~~~---~~~~ia~~~~~~~l~ql~~~---g~~H~D~hPgNi  288 (437)
T TIGR01982       216 NDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAAL-DEAGL---DRKALAENLARSFLNQVLRD---GFFHADLHPGNI  288 (437)
T ss_pred             CCCCEEeCCEehhhcCCceEEEEeECCcccccHHHH-HhcCC---CHHHHHHHHHHHHHHHHHhC---CceeCCCCcccE
Confidence            4445666665543 4567999999999999988753 11122   23456666665 46788999   999999999999


Q ss_pred             eeCCCCceEEeeecccccCCC
Q 044568          126 LMDEFWTAKILDFGLAKLPNE  146 (257)
Q Consensus       126 l~~~~~~~kl~dfg~~~~~~~  146 (257)
                      ++..++.++++|||++...+.
T Consensus       289 lv~~~g~i~liDfG~~~~l~~  309 (437)
T TIGR01982       289 FVLKDGKIIALDFGIVGRLSE  309 (437)
T ss_pred             EECCCCcEEEEeCCCeeECCH
Confidence            999999999999999876543

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.10  E-value=5e-10  Score=101.01  Aligned_cols=135  Identities=13%  Similarity=0.113  Sum_probs=103.5

Q ss_pred             ccccCCceeeeceeeeecCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCC
Q 044568           44 TRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQ  123 (257)
Q Consensus        44 ~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~  123 (257)
                      ..+|||||+++.......+..|||+|-+  -.|..++..     +......--+.||+.||.|||..|  +++|+|+...
T Consensus        64 KtlRHP~Il~yL~t~e~~~~~ylvTErV--~Pl~~~lk~-----l~~~~v~~Gl~qIl~AL~FL~~d~--~lvHgNv~~~  134 (690)
T KOG1243|consen   64 KTLRHPNILSYLDTTEEEGTLYLVTERV--RPLETVLKE-----LGKEEVCLGLFQILAALSFLNDDC--NLVHGNVCKD  134 (690)
T ss_pred             hhccCchhhhhhhhhcccCceEEEeecc--ccHHHHHHH-----hHHHHHHHHHHHHHHHHHHHhccC--CeeeccEeee
Confidence            3899999999999999999999999988  478888864     334555566889999999999766  9999999999


Q ss_pred             ceeeCCCCceEEeeecccccCCCCcc---cccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCC
Q 044568          124 NILMDEFWTAKILDFGLAKLPNEDFV---IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRK  189 (257)
Q Consensus       124 nil~~~~~~~kl~dfg~~~~~~~~~~---~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~  189 (257)
                      .+++...|.-||++|.++........   ....-..|..|+......  -..|.|.||+++||++.|..
T Consensus       135 SVfVn~~GeWkLggle~v~~~~~~~~~~~~~~~~~s~~~P~~~~~s~--~s~D~~~Lg~li~el~ng~~  201 (690)
T KOG1243|consen  135 SVFVNESGEWKLGGLELVSKASGFNAPAKSLYLIESFDDPEEIDPSE--WSIDSWGLGCLIEELFNGSL  201 (690)
T ss_pred             eEEEcCCCcEEEeeeEEEeccccCCcccccchhhhcccChhhcCccc--cchhhhhHHHHHHHHhCccc
Confidence            99999999999999988764333221   111111255555433222  23599999999999999843

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.06  E-value=1.5e-10  Score=108.78  Aligned_cols=177  Identities=16%  Similarity=0.111  Sum_probs=131.3

Q ss_pred             eeecCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEee
Q 044568           58 AKLTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILD  137 (257)
Q Consensus        58 ~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d  137 (257)
                      +...+..+||++|..+++|...++  .....+.+-++.+...+..+.++||+.   .+.|+|++|.|.+...++..++.+
T Consensus       873 ~~~rsP~~L~~~~~~~~~~~Skl~--~~~~~saepaRs~i~~~vqs~e~L~s~---~r~h~~~~p~~~l~~~~gh~~l~~  947 (1205)
T KOG0606|consen  873 FPCRSPLPLVGHYLNGGDLPSKLH--NSGCLSAEPARSPILERVQSLESLHSS---LRKHRDLKPDSLLIAYDGHRPLTD  947 (1205)
T ss_pred             CCCCCCcchhhHHhccCCchhhhh--cCCCcccccccchhHHHHhhhhccccc---hhhcccccccchhhcccCCcccCc
Confidence            456778899999999999999998  444566677778888999999999998   899999999999999999999999


Q ss_pred             ecccccCCCC----------------------------------cccccCCCCccCcccccCCCCCccccchhHHHHHHH
Q 044568          138 FGLAKLPNED----------------------------------FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLE  183 (257)
Q Consensus       138 fg~~~~~~~~----------------------------------~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~e  183 (257)
                      |+........                                  .....+|+.|.+||.+.+......+|+|++|++++|
T Consensus       948 ~~t~~~vg~~~p~~~~sg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~t~~~laPe~~lg~~hgs~ad~~~~g~~l~e 1027 (1205)
T KOG0606|consen  948 FGTLSKVGLIPPTTDLSGPSSSGTPRRLSRSERRPQLSADEARRKHAVVGTPDYLAPEILLGRRHGSAADWWSSGVCLFE 1027 (1205)
T ss_pred             cccccccccccCcCCcccccccCccccccccccccccccchhhccccccCCCcccCCcccccccCCCcchhhhhhhhhhh
Confidence            9743211000                                  023356777999999999998999999999999999


Q ss_pred             HHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hH
Q 044568          184 TICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MK  251 (257)
Q Consensus       184 l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~  251 (257)
                      .++|.+||.....+...   .         .-+..-+....-+.....+.-+++...+..+|.+|- +.
T Consensus      1028 ~l~g~pp~na~tpq~~f---~---------ni~~~~~~~p~g~~~~s~~aq~~~~~ll~~~~~qr~~a~ 1084 (1205)
T KOG0606|consen 1028 VLTGIPPFNAETPQQIF---E---------NILNRDIPWPEGPEEGSYEAQDLINRLLTEEPTQRLGAK 1084 (1205)
T ss_pred             hhcCCCCCCCcchhhhh---h---------ccccCCCCCCCCccccChhhhhhhhhhhccCchhccCcc
Confidence            99999999866333211   0         001011111122334445666777788888998887 43

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.98  E-value=7.1e-10  Score=98.78  Aligned_cols=188  Identities=19%  Similarity=0.144  Sum_probs=133.1

Q ss_pred             cCCceeeeceeeeecCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHH----HHHHHhhCCCCCeeeccCCC
Q 044568           47 RGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAK----GILYLHDECEPPILHCDIKP  122 (257)
Q Consensus        47 ~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~----~l~~lh~~~~~~i~h~dl~~  122 (257)
                      .|+|.++..-.+...+..++-+|+|. .+|.++... ...-++.........+..+    |+.++|+.   +++|-|++|
T Consensus       176 ~~~~~v~~~~~~e~~~~lfiqtE~~~-~sl~~~~~~-~~~~~p~~~l~~~~~~~~~~~~~al~~~hs~---~~~~~~~kp  250 (524)
T KOG0601|consen  176 SHENPVRDSPAWEGSGILFIQTELCG-ESLQSYCHT-PCNFLPDNLLWNSLRDWLSRDVTALSHLHSN---NIVHDDLKP  250 (524)
T ss_pred             ccccccccCcccccCCcceeeecccc-chhHHhhhc-ccccCCchhhhhHHhhhhhcccccccccCCC---cccccccch
Confidence            47777776666777888888999985 688888863 2233666777777777777    99999999   999999999


Q ss_pred             CceeeCCC-CceEEeeecccccCCCCc--------ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCc
Q 044568          123 QNILMDEF-WTAKILDFGLAKLPNEDF--------VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEI  193 (257)
Q Consensus       123 ~nil~~~~-~~~kl~dfg~~~~~~~~~--------~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~  193 (257)
                      .|+.+..+ ...+++|||+...++...        ....+...|++||...+ -++..+|++++|.+..+..++..++..
T Consensus       251 ~~i~~~~~~~s~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~-l~~~~~di~sl~ev~l~~~l~~~~~~~  329 (524)
T KOG0601|consen  251 ANIFTTSDWTSCKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNG-LATFASDIFSLGEVILEAILGSHLPSV  329 (524)
T ss_pred             hheecccccceeecCCcceeEEccCCccccceeeeecCCCCceEeChhhhcc-ccchHhhhcchhhhhHhhHhhcccccC
Confidence            99999988 889999999887554332        11245566999998754 468899999999999999998887753


Q ss_pred             CCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHH
Q 044568          194 DASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAV  254 (257)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~  254 (257)
                      .-.       ..|       .+.+....+.++-..-..++...+.++++.+|..|+ ++.+.
T Consensus       330 g~~-------~~W-------~~~r~~~ip~e~~~~~s~~l~~~~~~~~d~~~~~~~~~q~~~  377 (524)
T KOG0601|consen  330 GKN-------SSW-------SQLRQGYIPLEFCEGGSSSLRSVTSQMLDEDPRLRLTAQILT  377 (524)
T ss_pred             CCC-------CCc-------cccccccCchhhhcCcchhhhhHHHHhcCcchhhhhHHHHHh
Confidence            300       011       111111111111111123455588899999999999 66554

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=98.91  E-value=4.9e-09  Score=95.15  Aligned_cols=90  Identities=19%  Similarity=0.113  Sum_probs=62.1

Q ss_pred             CCceeeeceeeee-cCceeEEEeecCCCCHHHHHhccCCC----CCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCC
Q 044568           48 GGLLLNVPVRAKL-TSVSGKIERPVRNGSLTDIIFCSAER----NPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKP  122 (257)
Q Consensus        48 h~~i~~~~~~~~~-~~~~~lV~E~~~~gsL~~~l~~~~~~----~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~  122 (257)
                      +...+.++....+ .+..+|||||++|+++.++-.-...+    .+....+..++.|+       ...   |++|+|++|
T Consensus       219 ~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~~~l~~~g~d~~~la~~~v~~~~~Qi-------f~~---GffHaDpHP  288 (537)
T PRK04750        219 DSDMLYVPEVYWDYCSETVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVEVFFTQV-------FRD---GFFHADMHP  288 (537)
T ss_pred             CCCCeecceeecccCCCceEEEeeecCccHHhHHHHHhcCCCHHHHHHHHHHHHHHHH-------HhC---CeeeCCCCh
Confidence            4455666666654 56788999999999998753210111    13333333344444       456   999999999


Q ss_pred             CceeeCCCC----ceEEeeecccccCCCC
Q 044568          123 QNILMDEFW----TAKILDFGLAKLPNED  147 (257)
Q Consensus       123 ~nil~~~~~----~~kl~dfg~~~~~~~~  147 (257)
                      .||+++.++    .++++|||+....+..
T Consensus       289 GNIlv~~~g~~~~~i~llDFGivg~l~~~  317 (537)
T PRK04750        289 GNIFVSYDPPENPRYIALDFGIVGSLNKE  317 (537)
T ss_pred             HHeEEecCCCCCCeEEEEecceEEECCHH
Confidence            999999887    8999999998765443

>cd05151 ChoK Choline Kinase (ChoK)

Probab=98.87  E-value=8.4e-09  Score=79.97  Aligned_cols=113  Identities=17%  Similarity=0.058  Sum_probs=74.8

Q ss_pred             cccceeeecccCCCCCeeecc--------chhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCH
Q 044568            5 KLSNFYRSSFNARNSPWISRV--------SWTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSL   76 (257)
Q Consensus         5 ~~~~~y~~~~~~~~~~~i~~~--------~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL   76 (257)
                      .++.+|+.+.. ++..++|..        .+.+|.+.+....         +.+++.-+ .....+..++||||++|.++
T Consensus        10 ~~~~vy~~~~~-~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~---------~~~~~P~~-~~~~~~~~~lv~e~i~G~~l   78 (170)
T cd05151          10 MTNKNYRVEVA-NKKYVVRIPGNGTELLINRENEAENSKLAA---------EAGIGPKL-YYFDPETGVLITEFIEGSEL   78 (170)
T ss_pred             ccCceEEEEEC-CeEEEEEeCCCCcccccCHHHHHHHHHHHH---------HhCCCCce-EEEeCCCCeEEEEecCCCcc
Confidence            45688888865 555666553        2345555555221         11222111 12233456899999999887


Q ss_pred             HHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCC-----eeeccCCCCceeeCCCCceEEeeecccc
Q 044568           77 TDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPP-----ILHCDIKPQNILMDEFWTAKILDFGLAK  142 (257)
Q Consensus        77 ~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~-----i~h~dl~~~nil~~~~~~~kl~dfg~~~  142 (257)
                      .+.-          .....+..+++.++..||+.   +     ++|+|+++.||+++ ++.++++||+.+.
T Consensus        79 ~~~~----------~~~~~~~~~l~~~l~~LH~~---~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~  135 (170)
T cd05151          79 LTED----------FSDPENLEKIAKLLKKLHSS---PLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAG  135 (170)
T ss_pred             cccc----------ccCHHHHHHHHHHHHHHhCC---CCCCceeecCCCCcCcEEEE-CCeEEEEeccccc
Confidence            6530          11234567899999999998   6     59999999999999 5689999999764

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=98.84  E-value=2.8e-08  Score=78.90  Aligned_cols=76  Identities=11%  Similarity=0.086  Sum_probs=59.0

Q ss_pred             CceeEEEeecCCCCHHH-HHhccCCCCCCHHHHHHHHHHHHHHHHHH-hhCCCCCeeeccCCCCceeeCCCCceEEeeec
Q 044568           62 SVSGKIERPVRNGSLTD-IIFCSAERNPYWNQRVRIALDVAKGILYL-HDECEPPILHCDIKPQNILMDEFWTAKILDFG  139 (257)
Q Consensus        62 ~~~~lV~E~~~~gsL~~-~l~~~~~~~l~~~~~~~~~~~i~~~l~~l-h~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg  139 (257)
                      ...+|||||+.++.+.. .+.   +..++..+...+..+++.++..+ |+.   +++|+|+++.||++.+ +.+.++|||
T Consensus        97 ~~~~lvME~Ig~~~~~~~~Lk---d~~~~~~~~~~i~~~i~~~l~~l~H~~---glVHGDLs~~NIL~~~-~~v~iIDF~  169 (197)
T cd05146          97 KKHVLVMSFIGDDQVPAPKLK---DAKLNDEEMKNAYYQVLSMMKQLYKEC---NLVHADLSEYNMLWHD-GKVWFIDVS  169 (197)
T ss_pred             cCCEEEEEEcCCCCccchhhh---ccccCHHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEEC-CcEEEEECC
Confidence            56788999997654422 232   23455566778889999999988 888   9999999999999974 589999999


Q ss_pred             ccccC
Q 044568          140 LAKLP  144 (257)
Q Consensus       140 ~~~~~  144 (257)
                      .+...
T Consensus       170 qav~~  174 (197)
T cd05146         170 QSVEP  174 (197)
T ss_pred             CceeC
Confidence            87643

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.74  E-value=5.3e-08  Score=75.51  Aligned_cols=79  Identities=22%  Similarity=0.291  Sum_probs=62.9

Q ss_pred             eeeceeee-ecCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCC
Q 044568           52 LNVPVRAK-LTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF  130 (257)
Q Consensus        52 ~~~~~~~~-~~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~  130 (257)
                      ++.|.... +.+...|+|||.+|..|.+.+...         ...++..+-.-+.-||..   +|+|+|++++|+++.++
T Consensus        61 V~~P~v~dvD~~~~~I~me~I~G~~lkd~l~~~---------~~~~~r~vG~~vg~lH~~---givHGDLTtsNiIl~~~  128 (204)
T COG3642          61 VPVPIVYDVDPDNGLIVMEYIEGELLKDALEEA---------RPDLLREVGRLVGKLHKA---GIVHGDLTTSNIILSGG  128 (204)
T ss_pred             CCCCeEEEEcCCCCEEEEEEeCChhHHHHHHhc---------chHHHHHHHHHHHHHHhc---CeecCCCccceEEEeCC
Confidence            34444444 456667999999999999999742         245677777778889999   99999999999999987


Q ss_pred             CceEEeeeccccc
Q 044568          131 WTAKILDFGLAKL  143 (257)
Q Consensus       131 ~~~kl~dfg~~~~  143 (257)
                       .+.++|||++..
T Consensus       129 -~i~~IDfGLg~~  140 (204)
T COG3642         129 -RIYFIDFGLGEF  140 (204)
T ss_pred             -cEEEEECCcccc
Confidence             489999999863

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.73  E-value=1.3e-07  Score=78.88  Aligned_cols=78  Identities=21%  Similarity=0.081  Sum_probs=65.5

Q ss_pred             CceeEEEeecCCC-CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCC-------CCce
Q 044568           62 SVSGKIERPVRNG-SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE-------FWTA  133 (257)
Q Consensus        62 ~~~~lV~E~~~~g-sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~-------~~~~  133 (257)
                      ...+||||++++. +|.+++........+...+..++.+++..+.-||..   |++|+|++++|||++.       +..+
T Consensus       108 ~~s~LVte~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~la~~i~~LH~~---Gi~HgDL~~~NiLl~~~~~~~~~~~~~  184 (268)
T PRK15123        108 RTSFIITEDLAPTISLEDYCADWATNPPDPRLKRMLIKRVATMVRDMHAA---GINHRDCYICHFLLHLPFPGREEDLKL  184 (268)
T ss_pred             ceeEEEEeeCCCCccHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHC---cCccCCCChhhEEEeccccCCCCCceE
Confidence            3578999999876 899998643334556677889999999999999999   9999999999999975       4678


Q ss_pred             EEeeecccc
Q 044568          134 KILDFGLAK  142 (257)
Q Consensus       134 kl~dfg~~~  142 (257)
                      .++||+.+.
T Consensus       185 ~LIDl~r~~  193 (268)
T PRK15123        185 SVIDLHRAQ  193 (268)
T ss_pred             EEEECCccc
Confidence            999999775

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.69  E-value=9.6e-09  Score=91.66  Aligned_cols=184  Identities=16%  Similarity=0.064  Sum_probs=125.9

Q ss_pred             CCceeeeceeeeecCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceee
Q 044568           48 GGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM  127 (257)
Q Consensus        48 h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~  127 (257)
                      |.+.+.....+...++.++=.|||+++++...+.  ....+.....+.+..|++.++.++|+.   .++|+|++|.||++
T Consensus       325 ~~~~~g~~~~W~~~r~~~ip~e~~~~~s~~l~~~--~~~~~d~~~~~~~~~q~~~~l~~i~s~---~~~~~d~~psni~i  399 (524)
T KOG0601|consen  325 HLPSVGKNSSWSQLRQGYIPLEFCEGGSSSLRSV--TSQMLDEDPRLRLTAQILTALNVIHSK---LFVHLDVKPSNILI  399 (524)
T ss_pred             ccccCCCCCCccccccccCchhhhcCcchhhhhH--HHHhcCcchhhhhHHHHHhccccccch---hhhcccccccceee
Confidence            4555555555556667778889999998888773  556678888999999999999999999   99999999999999


Q ss_pred             CCC-CceEEeeecccccCCCCcccccCCCCcc--CcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHH
Q 044568          128 DEF-WTAKILDFGLAKLPNEDFVIDKRDKGYM--APECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILT  204 (257)
Q Consensus       128 ~~~-~~~kl~dfg~~~~~~~~~~~~~~~~~~~--aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~  204 (257)
                      ..+ +..++.||+++....-..........+.  ++.......+..+.|++|||.-+.|.+++..--.....        
T Consensus       400 ~~~~~~~~~~~~~~~t~~~~~~~~~~~~~r~~p~~~~~~e~~~~~~~~~~~sl~~~~~e~~~~~~ls~~~~~--------  471 (524)
T KOG0601|consen  400 SNDGFFSKLGDFGCWTRLAFSSGVFHHIDRLYPIAEILLEDYPHLSKADIFSLGLSVDEAITGSPLSESGVQ--------  471 (524)
T ss_pred             ccchhhhhccccccccccceecccccccccccccchhhccccccccccccccccccccccccCcccCccccc--------
Confidence            986 7889999998754222222222222333  45555566788999999999999999987754432100        


Q ss_pred             HHHHHhhhhhhhhhhhcCC-CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          205 NWVYKCFINRELNKLVRGT-KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                                 +..+..+. .........+-.+...+...++..|| +.++..
T Consensus       472 -----------~~~i~~~~~p~~~~~~~~~q~~~kv~~~~~~~~~~l~~~l~~  513 (524)
T KOG0601|consen  472 -----------SLTIRSGDTPNLPGLKLQLQVLLKVMINPDRKRRPSAVELSL  513 (524)
T ss_pred             -----------ceeeecccccCCCchHHhhhhhhhhhcCCccccchhhhhhcc
Confidence                       00011110 00111114455566678889999999 776643

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.64  E-value=1.7e-08  Score=91.70  Aligned_cols=151  Identities=15%  Similarity=0.203  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc------------ccccCCCCcc
Q 044568           91 NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF------------VIDKRDKGYM  158 (257)
Q Consensus        91 ~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~------------~~~~~~~~~~  158 (257)
                      ++...=+.+++.|+.|+|.+.  +++|+++.|++|.+...+..|++.|+.+.......            ........|.
T Consensus        99 e~~f~nl~~v~dgl~flh~sA--k~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~  176 (700)
T KOG2137|consen   99 EDGFANLGNVADGLAFLHRSA--KVVHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFL  176 (700)
T ss_pred             cHhhhhhhcccchhhhhccCc--ceeecccchhheeeccCcceeeccchhhhccCCCCccccccCCCCCChhhccCcccc
Confidence            444455667779999999984  99999999999999999999999998765433211            1112233499


Q ss_pred             CcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHH
Q 044568          159 APECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVG  237 (257)
Q Consensus       159 aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  237 (257)
                      +||++.....+.++|++|+|+++|.+.. |+.-+.............           ...-......+.+.+.++.+-+
T Consensus       177 apE~~~~~~~~~~sd~fSlG~li~~i~~~gk~i~~a~~~~~~~~~~~-----------~~~~~~~~~~s~~~p~el~~~l  245 (700)
T KOG2137|consen  177 APEYLLGTTNTPASDVFSLGVLIYTIYNGGKSIIAANGGLLSYSFSR-----------NLLNAGAFGYSNNLPSELRESL  245 (700)
T ss_pred             cchhhccccccccccceeeeeEEEEEecCCcchhhccCCcchhhhhh-----------cccccccccccccCcHHHHHHH
Confidence            9999998777899999999999999994 555554332221110000           0000001123455667888888


Q ss_pred             HHcccCCCCCCC-hHHHH
Q 044568          238 LWCVQDEPALRP-MKCAV  254 (257)
Q Consensus       238 ~~cl~~~p~~RP-~~ei~  254 (257)
                      ...+..++..|| +.++.
T Consensus       246 ~k~l~~~~~~rp~~~~l~  263 (700)
T KOG2137|consen  246 KKLLNGDSAVRPTLDLLL  263 (700)
T ss_pred             HHHhcCCcccCcchhhhh
Confidence            899999999999 77764

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.58  E-value=1.9e-07  Score=72.32  Aligned_cols=83  Identities=23%  Similarity=0.271  Sum_probs=63.1

Q ss_pred             eeeecCceeEEEeecCC-CCHHHHHhccCCCCCCHHHH-HHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCC---
Q 044568           57 RAKLTSVSGKIERPVRN-GSLTDIIFCSAERNPYWNQR-VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW---  131 (257)
Q Consensus        57 ~~~~~~~~~lV~E~~~~-gsL~~~l~~~~~~~l~~~~~-~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~---  131 (257)
                      ++.+...-.|+|||.++ .++.+++... ...-..+.. ..++.++-+.+.-||..   +++|+||+.+||++..++   
T Consensus        78 ~~~D~~~~~i~ME~~~g~~~vk~~i~~~-~~~~~~d~~~~~~~~~iG~~igklH~n---diiHGDLTTSNill~~~~~~~  153 (229)
T KOG3087|consen   78 IFIDTYGGQIYMEFIDGASTVKDFILST-MEDESEDEGLAELARRIGELIGKLHDN---DIIHGDLTTSNILLRSDGNQI  153 (229)
T ss_pred             EEEecCCCeEEEEeccchhHHHHHHHHH-ccCcccchhHHHHHHHHHHHHHHhhhC---CeecccccccceEEecCCCcC
Confidence            34455566789999976 3889998753 222233333 67889999999999999   999999999999986554   


Q ss_pred             ceEEeeeccccc
Q 044568          132 TAKILDFGLAKL  143 (257)
Q Consensus       132 ~~kl~dfg~~~~  143 (257)
                      .+.++|||++..
T Consensus       154 ~~~lIdfgls~~  165 (229)
T KOG3087|consen  154 TPILIDFGLSSV  165 (229)
T ss_pred             ceEEEeecchhc
Confidence            357999999763

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=98.57  E-value=9e-07  Score=76.72  Aligned_cols=188  Identities=12%  Similarity=0.131  Sum_probs=121.7

Q ss_pred             eeEEEeecCCC-CHHHHHhcc----CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeee
Q 044568           64 SGKIERPVRNG-SLTDIIFCS----AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDF  138 (257)
Q Consensus        64 ~~lV~E~~~~g-sL~~~l~~~----~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~df  138 (257)
                      .++.|...++- -+.+++.-.    +-.-..|.-.+..+..++.+..-||.+   |..-+|+++.|+|+++++.+.|.|-
T Consensus        85 iGflmP~v~g~~pI~~~y~p~tRRqs~P~~~w~fllrvaRnlA~aFA~lH~~---Gh~vGDVn~~~~lVsd~~~V~LVds  161 (637)
T COG4248          85 IGFLMPKVSGKEPIHMIYSPATRRQSYPHCAWDFLLRVARNLASAFATLHEH---GHVVGDVNQNSFLVSDDSKVVLVDS  161 (637)
T ss_pred             eEEecccCCCccchhhhcCchhhcccCCccccHHHHHHHHHHHHHHHHHHhc---CCcccccCccceeeecCceEEEEcc
Confidence            67888877654 344444311    122367889999999999999999999   9999999999999999999999885


Q ss_pred             ccccc--CCCCcccccCCCCccCccccc-----CCCCCccccchhHHHHHHHHHhc-CCCCCcCCCC-----hhhHHHHH
Q 044568          139 GLAKL--PNEDFVIDKRDKGYMAPECYK-----RTPISVKADVYGYGIVLLETICC-RKNMEIDASK-----PEEIILTN  205 (257)
Q Consensus       139 g~~~~--~~~~~~~~~~~~~~~aPE~~~-----~~~~~~~~Di~s~G~~l~el~~g-~~pf~~~~~~-----~~~~~~~~  205 (257)
                      ..-..  .+.......+...|.+||.-.     +-.-+...|.|.+|+++++++.| ++||.+....     ..+..+..
T Consensus       162 Dsfqi~~ng~~~~cpVg~~eftPPElQ~~~sf~g~~r~~~hD~FGLavLiF~lL~ggrHPysGI~~~~~ap~p~E~~Ia~  241 (637)
T COG4248         162 DSFQINANGTLHLCPVGVSEFTPPELQTLPSFVGFERTANHDNFGLAVLIFHLLFGGRHPYSGIPLISDAPNPLETDIAH  241 (637)
T ss_pred             cceeeccCCceEecccCccccCCHHHhccccccccCCCccccchhHHHHHHHHHhcCCCCCCcccccCCCCCcchhhhhc
Confidence            43222  222234556777899999765     22346789999999999999996 9999864211     11111111


Q ss_pred             HHHHhhhhhhhhhhhc--CCCCCHHH-HHHHHHHHHHcccCC--CCCCC-hHHHHHh
Q 044568          206 WVYKCFINRELNKLVR--GTKVDKKN-LENLVKVGLWCVQDE--PALRP-MKCAVMM  256 (257)
Q Consensus       206 ~~~~~~~~~~~~~~~~--~~~~~~~~-~~~l~~l~~~cl~~~--p~~RP-~~ei~~~  256 (257)
                      ..+.  ..++.+....  +++.+.+. ++.+-.|..+|+...  +.-|| ++-.+..
T Consensus       242 g~f~--ya~~~~~g~~p~P~~~P~~~Lpp~vqAlF~qaF~~~~~~~~RP~a~aW~aA  296 (637)
T COG4248         242 GRFA--YASDQRRGLKPPPRSIPLSMLPPDVQALFQQAFTESGVATPRPTAKAWVAA  296 (637)
T ss_pred             ceee--echhccCCCCCCCCCCChhhcCHHHHHHHHHHhcccCCCCCCCCHHHHHHH
Confidence            1111  1111111111  22333333 356666677887654  56899 8776654

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=98.57  E-value=1.7e-06  Score=76.72  Aligned_cols=158  Identities=13%  Similarity=0.090  Sum_probs=116.4

Q ss_pred             ccceeeec-ccCCCCCeeecc-----chh----hhHHHHhHhhhccccccccCCceeeeceeeee----cCceeEEEeec
Q 044568            6 LSNFYRSS-FNARNSPWISRV-----SWT----ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL----TSVSGKIERPV   71 (257)
Q Consensus         6 ~~~~y~~~-~~~~~~~~i~~~-----~~~----~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~----~~~~~lV~E~~   71 (257)
                      ++..||.. --+|....+++.     .+.    ..++.+.         ++.|.|+|.+...+..    +...++|+.|.
T Consensus       289 ~~Ttyk~~s~~DG~~YvLkRlhg~r~~~~nk~t~lve~wk---------kl~h~NvV~frevf~t~tF~D~SlvlvYDYy  359 (655)
T KOG3741|consen  289 SITTYKATSNVDGNAYVLKRLHGDRDQSTNKDTSLVEAWK---------KLCHTNVVPFREVFLTYTFGDLSLVLVYDYY  359 (655)
T ss_pred             cceeEeeeeccCCceeeeeeeccccccCcccchHHHHHHH---------HhccCceeehhhhhhhhccCcceEEEEEecC
Confidence            44566766 557777788887     232    2244444         8889999999888873    45778999998


Q ss_pred             CC-CCHHHHHhcc-------------CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEee
Q 044568           72 RN-GSLTDIIFCS-------------AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILD  137 (257)
Q Consensus        72 ~~-gsL~~~l~~~-------------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d  137 (257)
                      ++ ++|.+.-+..             ++...++...+.++.|+..||.++|+.   |+.-+-+.+.+|+++++.+++++.
T Consensus       360 P~s~TL~d~~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIHss---GLAck~L~~~kIlv~G~~RIriS~  436 (655)
T KOG3741|consen  360 PSSPTLYDLYFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIHSS---GLACKTLDLKKILVTGKMRIRISG  436 (655)
T ss_pred             CCCchHHHHHccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHhc---CceeecccHhHeEeeCcceEEEec
Confidence            75 5898887643             223466788899999999999999999   999999999999999988898887


Q ss_pred             ecccccCCCCcccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCC
Q 044568          138 FGLAKLPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRK  189 (257)
Q Consensus       138 fg~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~  189 (257)
                      .|.......+.         .  +.+.   -..+.|.-.||.++.-+.||..
T Consensus       437 C~i~Dvl~~d~---------~--~~le---~~Qq~D~~~lG~ll~aLAt~~~  474 (655)
T KOG3741|consen  437 CGIMDVLQEDP---------T--EPLE---SQQQNDLRDLGLLLLALATGTE  474 (655)
T ss_pred             ccceeeecCCC---------C--cchh---HHhhhhHHHHHHHHHHHhhccc
Confidence            77654332221         0  1111   1246799999999999999854

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=98.52  E-value=1.4e-06  Score=70.28  Aligned_cols=128  Identities=17%  Similarity=0.140  Sum_probs=83.6

Q ss_pred             cccceeeecccCCCCCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeec---CceeEEEeec
Q 044568            5 KLSNFYRSSFNARNSPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT---SVSGKIERPV   71 (257)
Q Consensus         5 ~~~~~y~~~~~~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~---~~~~lV~E~~   71 (257)
                      ....+|+.+..+++..++|...          +.+|.+.+......    .+..+   ++.......   +..++||||+
T Consensus        10 ~~n~~~~v~~~~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~----~~~vp---~~~~~~~~~~~~~~~~~v~e~i   82 (223)
T cd05154          10 QSNLTYLLTAGGGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGT----GVPVP---KVLALCEDPSVLGTPFYVMERV   82 (223)
T ss_pred             ccceEEEEEecCCcceEEEeCCCcccCcccccHHHHHHHHHHhhCC----CCCCC---CEEEECCCCCccCCceEEEEEe
Confidence            4667888887766677776433          24455544411111    12222   233333332   3568999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCC----------------------------------------
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDEC----------------------------------------  111 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~----------------------------------------  111 (257)
                      +|.++.+.+..   ..++..+...++.+++.++..||+..                                        
T Consensus        83 ~G~~l~~~~~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (223)
T cd05154          83 DGRVLRDRLLR---PELSPEERRALARALADTLAALHSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDEPPAMER  159 (223)
T ss_pred             CCEecCCCCCC---CCCCHHHHHHHHHHHHHHHHHHhCCChhhcCCcccCCCCchHHHHHHHHHHHHHhhcccccHHHHH
Confidence            99888776531   34666777777888888887777531                                        


Q ss_pred             -------------CCCeeeccCCCCceeeCC--CCceEEeeecccc
Q 044568          112 -------------EPPILHCDIKPQNILMDE--FWTAKILDFGLAK  142 (257)
Q Consensus       112 -------------~~~i~h~dl~~~nil~~~--~~~~kl~dfg~~~  142 (257)
                                   ...++|+|+++.||+++.  ++.+.++||+.+.
T Consensus       160 ~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~  205 (223)
T cd05154         160 LLRWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELAT  205 (223)
T ss_pred             HHHHHHhhCCCCCCcEEEECCCCcccEEEcCCCCcEEEEEeccccc
Confidence                         136799999999999998  5668899998765

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.51  E-value=4.1e-07  Score=73.17  Aligned_cols=76  Identities=26%  Similarity=0.271  Sum_probs=65.1

Q ss_pred             ceeEEEeecCCC-CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCC---ceEEeee
Q 044568           63 VSGKIERPVRNG-SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW---TAKILDF  138 (257)
Q Consensus        63 ~~~lV~E~~~~g-sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~---~~kl~df  138 (257)
                      ..+||+|++++. +|.+++...  ..++......++.+++..+.-||+.   |++|+|+++.|||+..+.   .+.++||
T Consensus        91 ~s~lite~l~~~~~L~~~~~~~--~~~~~~~~~~ll~~l~~~i~~lH~~---gi~H~Dl~~~NILv~~~~~~~~~~lIDl  165 (206)
T PF06293_consen   91 RSYLITEALPGAQDLRDLLQQW--EQLDPSQRRELLRALARLIAKLHDA---GIYHGDLNPSNILVDPDDGQYRFYLIDL  165 (206)
T ss_pred             eEEEEEEeCCCcccHHHHHHhh--cccchhhHHHHHHHHHHHHHHHHHC---cCCCCCCCcccEEEeCCCCceeEEEEcc
Confidence            458999999874 899999742  2266677889999999999999999   999999999999999886   7899999


Q ss_pred             ccccc
Q 044568          139 GLAKL  143 (257)
Q Consensus       139 g~~~~  143 (257)
                      +.++.
T Consensus       166 d~~~~  170 (206)
T PF06293_consen  166 DRMRF  170 (206)
T ss_pred             hhcee
Confidence            87653

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>PRK09902 hypothetical protein; Provisional

Probab=98.44  E-value=5.8e-06  Score=66.12  Aligned_cols=77  Identities=16%  Similarity=-0.000  Sum_probs=64.9

Q ss_pred             ceeEEEeecCC-CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCc--eEEeeec
Q 044568           63 VSGKIERPVRN-GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT--AKILDFG  139 (257)
Q Consensus        63 ~~~lV~E~~~~-gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~--~kl~dfg  139 (257)
                      ..+||+|-+++ -||.+++.+..-..++...+..+..+++..+.-||+.   |+.|+|+.+.||+++.++.  +.++||.
T Consensus        99 rA~LVTe~L~g~~~L~~~l~~~~~~~~~~~~k~~il~~va~~ia~LH~~---Gv~Hgdly~khIll~~~g~~~v~lIDlE  175 (216)
T PRK09902         99 RALLVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSV---NRQHGCCYVRHIYVKTEGKAEAGFLDLE  175 (216)
T ss_pred             EEEEEEEeCCCCccHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHhheeecCCCCeeEEEEEhh
Confidence            46799997754 4999998754445667788889999999999999999   9999999999999986566  8999997


Q ss_pred             ccc
Q 044568          140 LAK  142 (257)
Q Consensus       140 ~~~  142 (257)
                      .++
T Consensus       176 k~r  178 (216)
T PRK09902        176 KSR  178 (216)
T ss_pred             ccc
Confidence            655

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.31  E-value=4.4e-07  Score=71.70  Aligned_cols=74  Identities=22%  Similarity=0.237  Sum_probs=49.9

Q ss_pred             CceeEEEeecC--CCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHH-HhhCCCCCeeeccCCCCceeeCCCCceEEeee
Q 044568           62 SVSGKIERPVR--NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILY-LHDECEPPILHCDIKPQNILMDEFWTAKILDF  138 (257)
Q Consensus        62 ~~~~lV~E~~~--~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~-lh~~~~~~i~h~dl~~~nil~~~~~~~kl~df  138 (257)
                      +...|||||++  |..+..+...    .++......++.+++..+.. +|..   |++|+|+++.||+++++ .+.++||
T Consensus        79 ~~~~ivME~I~~~G~~~~~l~~~----~~~~~~~~~~~~~il~~~~~~~~~~---givHGDLs~~NIlv~~~-~~~iIDf  150 (188)
T PF01163_consen   79 NRNVIVMEYIGEDGVPLPRLKDV----DLSPEEPKELLEEILEEIIKMLHKA---GIVHGDLSEYNILVDDG-KVYIIDF  150 (188)
T ss_dssp             ETTEEEEE--EETTEEGGCHHHC----GGGGSTHHHHHHHHHHHHHHHHHCT---TEEESS-STTSEEEETT-CEEE--G
T ss_pred             eCCEEEEEecCCCccchhhHHhc----cccchhHHHHHHHHHHHHHHHHHhc---CceecCCChhhEEeecc-eEEEEec
Confidence            35579999998  5555444321    12234556778888885555 5788   99999999999999988 9999999


Q ss_pred             ccccc
Q 044568          139 GLAKL  143 (257)
Q Consensus       139 g~~~~  143 (257)
                      |.+..
T Consensus       151 ~qav~  155 (188)
T PF01163_consen  151 GQAVD  155 (188)
T ss_dssp             TTEEE
T ss_pred             Cccee
Confidence            98764

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=98.13  E-value=1.6e-05  Score=72.08  Aligned_cols=88  Identities=18%  Similarity=0.109  Sum_probs=60.9

Q ss_pred             eeeceeeee-cCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHH-HHHhhCCCCCeeeccCCCCceeeCC
Q 044568           52 LNVPVRAKL-TSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGI-LYLHDECEPPILHCDIKPQNILMDE  129 (257)
Q Consensus        52 ~~~~~~~~~-~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l-~~lh~~~~~~i~h~dl~~~nil~~~  129 (257)
                      +.+|.+..+ .+...|+||||+|..+.|.-.- ...+++...   ++..+.++. .-+-..   |.+|+|-+|.||++..
T Consensus       264 V~VP~Vy~~~st~RVLtME~~~G~~i~Dl~~i-~~~gi~~~~---i~~~l~~~~~~qIf~~---GffHaDPHPGNilv~~  336 (538)
T KOG1235|consen  264 VLVPKVYWDLSTKRVLTMEYVDGIKINDLDAI-DKRGISPHD---ILNKLVEAYLEQIFKT---GFFHADPHPGNILVRP  336 (538)
T ss_pred             eeCCeehhhcCcceEEEEEecCCccCCCHHHH-HHcCCCHHH---HHHHHHHHHHHHHHhc---CCccCCCCCCcEEEec
Confidence            557777775 4688999999999877666332 344555553   333333332 333444   9999999999999983


Q ss_pred             ----CCceEEeeecccccCCC
Q 044568          130 ----FWTAKILDFGLAKLPNE  146 (257)
Q Consensus       130 ----~~~~kl~dfg~~~~~~~  146 (257)
                          +..+.+.|||+......
T Consensus       337 ~~~~~~~ivllDhGl~~~is~  357 (538)
T KOG1235|consen  337 NPEGDEEIVLLDHGLYAVISH  357 (538)
T ss_pred             CCCCCccEEEEcccccccccH
Confidence                66889999998765443

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=98.11  E-value=1.1e-05  Score=64.80  Aligned_cols=68  Identities=24%  Similarity=0.191  Sum_probs=54.3

Q ss_pred             cCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecc
Q 044568           61 TSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGL  140 (257)
Q Consensus        61 ~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~  140 (257)
                      ....+|||||++|..|.+...      ++.    .+...+.+++.-+|+.   |+.|+|.+|+|++++++ .++++||+.
T Consensus       115 ~~~~~ll~EYIeG~~l~d~~~------i~e----~~~~ki~~~ikqlH~~---G~~HGD~hpgNFlv~~~-~i~iID~~~  180 (229)
T PF06176_consen  115 TSSYVLLMEYIEGVELNDIED------IDE----DLAEKIVEAIKQLHKH---GFYHGDPHPGNFLVSNN-GIRIIDTQG  180 (229)
T ss_pred             eeEEEEEEEEecCeecccchh------cCH----HHHHHHHHHHHHHHHc---CCccCCCCcCcEEEECC-cEEEEECcc
Confidence            456678999999988877642      222    3556677889999999   99999999999999966 589999976


Q ss_pred             cc
Q 044568          141 AK  142 (257)
Q Consensus       141 ~~  142 (257)
                      -+
T Consensus       181 k~  182 (229)
T PF06176_consen  181 KR  182 (229)
T ss_pred             cc
Confidence            54

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=98.05  E-value=2.6e-05  Score=70.76  Aligned_cols=93  Identities=19%  Similarity=0.138  Sum_probs=66.1

Q ss_pred             CCceeeeceeeee-cCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHH-HHHHhhCCCCCeeeccCCCCce
Q 044568           48 GGLLLNVPVRAKL-TSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKG-ILYLHDECEPPILHCDIKPQNI  125 (257)
Q Consensus        48 h~~i~~~~~~~~~-~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~-l~~lh~~~~~~i~h~dl~~~ni  125 (257)
                      ...-+.+|..+.. .+...|+|||++|-.+.+...- ...+.+   ...++..++.+ +..+-..   |+.|+|.+|.||
T Consensus       224 ~~~~v~VP~V~we~t~~~VLtmE~i~Gi~i~d~~~l-~~~g~d---~k~ia~~~~~~f~~q~~~d---gffHaDpHpGNi  296 (517)
T COG0661         224 DDPDVYVPKVYWEYTTRRVLTMEWIDGIKISDIAAL-KSAGID---RKELAELLVRAFLRQLLRD---GFFHADPHPGNI  296 (517)
T ss_pred             CCCCeEeceeehhccCCcEEEEEeeCCEecccHHHH-HhcCCC---HHHHHHHHHHHHHHHHHhc---CccccCCCccce
Confidence            3444677776664 6778899999999999988532 224454   33344433332 3334445   999999999999


Q ss_pred             eeCCCCceEEeeecccccCCCC
Q 044568          126 LMDEFWTAKILDFGLAKLPNED  147 (257)
Q Consensus       126 l~~~~~~~kl~dfg~~~~~~~~  147 (257)
                      ++..++.+.+.|||+....+..
T Consensus       297 ~v~~~g~i~~lDfGi~g~l~~~  318 (517)
T COG0661         297 LVRSDGRIVLLDFGIVGRLDPK  318 (517)
T ss_pred             EEecCCcEEEEcCcceecCCHH
Confidence            9999999999999998765443

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=97.95  E-value=7.4e-05  Score=60.94  Aligned_cols=77  Identities=16%  Similarity=0.078  Sum_probs=56.1

Q ss_pred             ceeEEEeecCCC-CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeeccc
Q 044568           63 VSGKIERPVRNG-SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA  141 (257)
Q Consensus        63 ~~~lV~E~~~~g-sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~  141 (257)
                      ...|||||+... .-.-.|   .+..+...+...+..+++..+.-|-..+  +++|+||+.-|||+. ++.+.++|++-+
T Consensus       140 ~nVLvMEfIg~~g~pAP~L---kDv~~e~~e~~~~~~~~v~~~~~l~~~a--~LVHgDLSEyNiL~~-~~~p~iID~~Qa  213 (268)
T COG1718         140 NNVLVMEFIGDDGLPAPRL---KDVPLELEEAEGLYEDVVEYMRRLYKEA--GLVHGDLSEYNILVH-DGEPYIIDVSQA  213 (268)
T ss_pred             CCeEEEEeccCCCCCCCCc---ccCCcCchhHHHHHHHHHHHHHHHHHhc--CcccccchhhheEEE-CCeEEEEECccc
Confidence            345899999543 111122   2233444478888899999988887732  999999999999999 679999999987


Q ss_pred             ccCC
Q 044568          142 KLPN  145 (257)
Q Consensus       142 ~~~~  145 (257)
                      ....
T Consensus       214 V~~~  217 (268)
T COG1718         214 VTID  217 (268)
T ss_pred             cccC
Confidence            6443

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=97.86  E-value=6.1e-05  Score=62.14  Aligned_cols=70  Identities=16%  Similarity=0.078  Sum_probs=50.1

Q ss_pred             ceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccc
Q 044568           63 VSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK  142 (257)
Q Consensus        63 ~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~  142 (257)
                      --.+||||.+|--|...=       ++......++..|+.-+...-..   |++|+|++.-||++++++.+.++||--+.
T Consensus       181 RHaVvMe~ieG~eL~~~r-------~~~en~~~il~~il~~~~~~~~~---GiVHGDlSefNIlV~~dg~~~vIDwPQ~v  250 (304)
T COG0478         181 RHAVVMEYIEGVELYRLR-------LDVENPDEILDKILEEVRKAYRR---GIVHGDLSEFNILVTEDGDIVVIDWPQAV  250 (304)
T ss_pred             cceeeeehcccceeeccc-------CcccCHHHHHHHHHHHHHHHHHc---CccccCCchheEEEecCCCEEEEeCcccc
Confidence            345799999875544321       12344445555666555555566   99999999999999999999999996543

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=97.74  E-value=0.00016  Score=70.02  Aligned_cols=185  Identities=16%  Similarity=0.095  Sum_probs=126.6

Q ss_pred             ccccccCCceeeeceeeeecCcee----EEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeee
Q 044568           42 KCTRIRGGLLLNVPVRAKLTSVSG----KIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILH  117 (257)
Q Consensus        42 ~~~~~~h~~i~~~~~~~~~~~~~~----lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h  117 (257)
                      +..++.|.|+....++.-..-...    +..|+|..-++.+.+.  .-...+..+.+.+..++..|+.|+|+.   ...|
T Consensus       235 ~l~k~~~~n~~~~~~~~le~~~~g~~~~v~~~~~s~~~~~~~~q--~v~~i~~~~~r~~~~~~~~GL~~~h~~---~l~~  309 (1351)
T KOG1035|consen  235 SLSKIAHDNLGGYFVYGLERLFRGIVLDVLQEICSKVELRSLLQ--SVGSIPLETLRILHQKLLEGLAYLHSL---SLEH  309 (1351)
T ss_pred             HHHhhccccccceeEEeehhhcchHHHHHHHhhcCccchHHHHh--hccccCHHHHHHHHHHHhhhHHHHHHh---ccce
Confidence            455788999988888777655444    3447888888888887  556678889999999999999999999   7777


Q ss_pred             ccCCCC---ceeeCCCCceEEe--eecccccCCCCc--ccccCCCCccCcccccCCCCC--ccccchhHHHHHHHHHhcC
Q 044568          118 CDIKPQ---NILMDEFWTAKIL--DFGLAKLPNEDF--VIDKRDKGYMAPECYKRTPIS--VKADVYGYGIVLLETICCR  188 (257)
Q Consensus       118 ~dl~~~---nil~~~~~~~kl~--dfg~~~~~~~~~--~~~~~~~~~~aPE~~~~~~~~--~~~Di~s~G~~l~el~~g~  188 (257)
                      .-+..+   +...+..+....+  +|+.+.......  ........+.++|......+.  ...|+|.+|.....+..|.
T Consensus       310 v~L~~s~~~~~~~~~e~~~~~sl~~~~ss~~l~d~~~~~~~~~~~~~~~~e~~~~~~~~~~r~~dL~~lgll~~~~~~~~  389 (1351)
T KOG1035|consen  310 VVLSASSSKESTVDGEGVVAISLSDFDSSKPLPDNEKSFSDLLAEIRNADEDLKENTAKKSRLTDLWCLGLLLLQLSQGE  389 (1351)
T ss_pred             eEEecccccccccCccceeecchhhhcccccCCCcccchhhcCccccccccccccccchhhhhhHHHHHHHHHhhhhhcC
Confidence            766666   4455555566555  777665433222  222334447778877766554  4479999999999999877


Q ss_pred             CCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          189 KNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       189 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .+-....                   ....+++.-.     ...+......|+..++++|+ +.+++.
T Consensus       390 ~i~~~~~-------------------~~~~~l~~~~-----~~~~~d~~~~~~~~~~~~Rl~~~~ll~  433 (1351)
T KOG1035|consen  390 DISEKSA-------------------VPVSLLDVLS-----TSELLDALPKCLDEDSEERLSALELLT  433 (1351)
T ss_pred             ccccccc-------------------chhhhhcccc-----chhhhhhhhhhcchhhhhccchhhhhh
Confidence            7653221                   1111111110     11455666789999999999 988875

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=97.40  E-value=0.0024  Score=52.54  Aligned_cols=30  Identities=23%  Similarity=0.206  Sum_probs=26.1

Q ss_pred             CCeeeccCCCCceeeCCCCceEEeeecccc
Q 044568          113 PPILHCDIKPQNILMDEFWTAKILDFGLAK  142 (257)
Q Consensus       113 ~~i~h~dl~~~nil~~~~~~~kl~dfg~~~  142 (257)
                      +.++|+|+.+.|++++++....|+||+.+.
T Consensus       163 ~~l~HgD~~~~Nil~~~~~~~~iIDwe~a~  192 (244)
T cd05150         163 LVVTHGDACLPNIIVDPGKFSGFIDLGRLG  192 (244)
T ss_pred             eEEECCCCCCccEEEeCCcEEEEEEccccc
Confidence            368999999999999998778899998664

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=97.31  E-value=9.2e-05  Score=67.59  Aligned_cols=140  Identities=16%  Similarity=0.020  Sum_probs=101.8

Q ss_pred             cccCCc-eeeeceeeeecCceeEEEeecCCC-CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCC
Q 044568           45 RIRGGL-LLNVPVRAKLTSVSGKIERPVRNG-SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKP  122 (257)
Q Consensus        45 ~~~h~~-i~~~~~~~~~~~~~~lV~E~~~~g-sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~  122 (257)
                      +..|+| .+...+-.+.++..+++++++.++ |-..-... ....+...+...+...-..+++++|+.   .-+|+|   
T Consensus       289 K~n~P~~~v~~~~d~~~E~~~~i~~~i~s~~rs~~~~~~~-se~~~~~~~~~~~~r~et~~l~~l~~~---~~~~~d---  361 (829)
T KOG0576|consen  289 KVNNPNPVVRYLEDYDGEDYLWIPMRICSTGRSSALEMTV-SEIALEQYQFAYPLRKETRPLAELHSS---YKVHRD---  361 (829)
T ss_pred             HccCCCCcccccccCCcccccchhhhhhcCCccccccCCh-hhHhhhhhhhhhhhhhhcccccccccc---cccCcc---
Confidence            888999 666666666778889999999877 32222211 223333344455666777889999997   668887   


Q ss_pred             CceeeCCCCceEEeeecccccCCCC--cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCc
Q 044568          123 QNILMDEFWTAKILDFGLAKLPNED--FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEI  193 (257)
Q Consensus       123 ~nil~~~~~~~kl~dfg~~~~~~~~--~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~  193 (257)
                       ||+..+ ...+..+|+........  .....+++.+++||....+.+..+.|.|+.|.-..++.-|.+|-..
T Consensus       362 -~~l~s~-~~~~~~~~~v~~~L~~~~~~~t~~~~~~~~~pev~~~~~~~~~p~~~~~~~~~~~~ap~~pPr~~  432 (829)
T KOG0576|consen  362 -NILGSE-EEVKLLDFAVPPQLTRTMKPRTAIGTPEPLAPEVIQENTIDGCPDSGSLAVSAIQMAPGLPPRSS  432 (829)
T ss_pred             -cccccc-cccccccccCCcccCcccccccCCCCCCCCCchhhcccccccCCCccCCCcchhhcCCCCCCCCC
Confidence             776655 47888999887655544  3556778899999999999999999999999877777777776543

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=97.11  E-value=0.0053  Score=49.50  Aligned_cols=29  Identities=38%  Similarity=0.520  Sum_probs=20.1

Q ss_pred             CeeeccCCCCceeeC-CCCceEEeeecccc
Q 044568          114 PILHCDIKPQNILMD-EFWTAKILDFGLAK  142 (257)
Q Consensus       114 ~i~h~dl~~~nil~~-~~~~~kl~dfg~~~  142 (257)
                      .++|+|+.+.||+++ +++.+.++||+.+.
T Consensus       167 ~~~HgD~~~~Nil~~~~~~~i~iID~e~a~  196 (239)
T PF01636_consen  167 VLIHGDLHPGNILVDPSDGRIGIIDFEDAG  196 (239)
T ss_dssp             EEE-SS-SGGGEEEESSTTEEEE--GTT-E
T ss_pred             EEEEeccccccceeeeccceeEEEecccce
Confidence            799999999999999 55566799998654

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=97.10  E-value=0.0019  Score=51.11  Aligned_cols=89  Identities=21%  Similarity=0.162  Sum_probs=67.1

Q ss_pred             ceeeeceeeeecCceeEEEeecCCCCHHHHHhc-cCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeC
Q 044568           50 LLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFC-SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD  128 (257)
Q Consensus        50 ~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~-~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~  128 (257)
                      ++.++.|.|    ..++|.||.+.+++...-.. ..-...+|..+.+++.+++..+.+++......+.-.|++++|+-+.
T Consensus        21 ~~pk~lG~C----G~~~v~E~~~~~~~~~~~~~l~~~~~~~w~~R~~iA~~lL~~l~~l~~~~~~~~~lcDv~~~nfgv~   96 (188)
T PF12260_consen   21 PFPKLLGSC----GRFYVVEYVGAGSLYGIYRPLSQFLQSPWEQRAKIALQLLELLEELDHGPLGFFYLCDVSPDNFGVN   96 (188)
T ss_pred             CCCCeeeEC----CCEEEEEeecCccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecchHHeEEe
Confidence            556667666    23579999987766432000 0112368999999999999999999985333678899999999999


Q ss_pred             CCCceEEeeecccc
Q 044568          129 EFWTAKILDFGLAK  142 (257)
Q Consensus       129 ~~~~~kl~dfg~~~  142 (257)
                      +++.+|++|...+.
T Consensus        97 ~~~~lk~iDld~v~  110 (188)
T PF12260_consen   97 DDGRLKLIDLDDVF  110 (188)
T ss_pred             CCCcEEEEechhcc
Confidence            99999999997654

Proteins in this uncharacterised family are described as transmembrane proteins.

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=97.01  E-value=0.0031  Score=56.80  Aligned_cols=185  Identities=16%  Similarity=0.106  Sum_probs=98.8

Q ss_pred             ceeeecccCCCCCeeeccch-hhhHHHHhHhhhccccccccCCceeeeceeeeecCc-eeEEEeecCCCCHHHHHhccCC
Q 044568            8 NFYRSSFNARNSPWISRVSW-TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSV-SGKIERPVRNGSLTDIIFCSAE   85 (257)
Q Consensus         8 ~~y~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~-~~lV~E~~~~gsL~~~l~~~~~   85 (257)
                      ..+.++...+..- ...... ++.++.++...   .+..+.|++++......+.... ..+|||++ +.||++.+.... 
T Consensus         4 ~~~~a~~~~~~~c-~nglplt~~s~~ilgr~~---~lktl~~~~l~~yl~~~r~~~~r~IVV~e~~-~~Sled~~~~~~-   77 (725)
T KOG1093|consen    4 FTFFAQEKPGDVC-SNGLPLTPNSIQILGRFQ---YLKSLQHDNLCQYLDFSRGKHERVIVVMEHY-TMSLEDILKTGN-   77 (725)
T ss_pred             eEEehhcCCCccc-cCCCcCCCcHHHHhhhhH---HHHhhcCccceeeEeeecCccceEEEEehhh-ccchHHHHHhcc-
Confidence            3444444444333 333333 56666666322   2237789999988887775433 56789998 469999986422 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcccccCCCCccCcccccC
Q 044568           86 RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMAPECYKR  165 (257)
Q Consensus        86 ~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~aPE~~~~  165 (257)
                        +-..+          ++    .+   ++.|-++            .+.+| .+...             |  |     
T Consensus        78 --l~~~s----------~~----~~---~~~~~~~------------~~~td-~~~t~-------------~--~-----  105 (725)
T KOG1093|consen   78 --LKDES----------LL----AH---GVLHLNI------------IYITD-HFLTK-------------Y--P-----  105 (725)
T ss_pred             --cchhh----------hc----cc---ccceehh------------hhccc-ccccc-------------C--C-----
Confidence              21111          00    22   3333222            11222 11100             0  0     


Q ss_pred             CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhh-hhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCC
Q 044568          166 TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCF-INRELNKLVRGTKVDKKNLENLVKVGLWCVQDE  244 (257)
Q Consensus       166 ~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~  244 (257)
                      .+..+|+||||+|.++.|+.-|..-+.....    ........+.+ .+.+...+.....+..++.+.+.++...|+-..
T Consensus       106 ~~~~pKsdVwsl~~i~~el~L~~~l~~~~~~----s~~l~~i~k~~~~d~~~~~~a~e~~~~~~~d~~~~~~~~~c~~~~  181 (725)
T KOG1093|consen  106 SPIGPKSDVWSLGFIILELYLGISLEAELTE----SEYLEILLKYYTDDQELLSTAMEHLIQLLADKKRLPLLKKCLWLE  181 (725)
T ss_pred             CCCCcchhhhhHHHHHHHHHHhhHHHHHHHH----HHHHHHHHHhccCchhHHHHHHHHHHHHhhhHhHHHHhccCCccc
Confidence            0112599999999999999998887753211    11111111111 111111111111334556678899999999999


Q ss_pred             CCCCC-hHHHH
Q 044568          245 PALRP-MKCAV  254 (257)
Q Consensus       245 p~~RP-~~ei~  254 (257)
                      |..|| ..+..
T Consensus       182 ~~ir~l~~~~~  192 (725)
T KOG1093|consen  182 PIIRPLPMELS  192 (725)
T ss_pred             cccccchhHHh
Confidence            99999 66553

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=96.93  E-value=0.008  Score=49.01  Aligned_cols=29  Identities=21%  Similarity=0.204  Sum_probs=25.3

Q ss_pred             CCeeeccCCCCceeeCCCCceEEeeecccc
Q 044568          113 PPILHCDIKPQNILMDEFWTAKILDFGLAK  142 (257)
Q Consensus       113 ~~i~h~dl~~~nil~~~~~~~kl~dfg~~~  142 (257)
                      +.++|+|+.|.|+++++++ +.++||+.+.
T Consensus       153 ~~~~HgD~~~~Nii~~~~~-~~iIDwe~a~  181 (226)
T TIGR02172       153 STCLHGDFQIGNLITSGKG-TYWIDLGDFG  181 (226)
T ss_pred             CceEecCCCCCcEEEcCCC-cEEEechhcC
Confidence            3678999999999999887 9999998764

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>KOG1826 consensus Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms]

Probab=96.76  E-value=0.00019  Score=71.54  Aligned_cols=184  Identities=14%  Similarity=0.085  Sum_probs=124.1

Q ss_pred             ceeeecccCCCCCee-----eccchhhhHHHHh---HhhhccccccccCCceeeeceeeee--cCceeEEEeecCCCCHH
Q 044568            8 NFYRSSFNARNSPWI-----SRVSWTADIEVLS---VAMRGSKCTRIRGGLLLNVPVRAKL--TSVSGKIERPVRNGSLT   77 (257)
Q Consensus         8 ~~y~~~~~~~~~~~i-----~~~~~~~~~~~~~---~~~~~~~~~~~~h~~i~~~~~~~~~--~~~~~lV~E~~~~gsL~   77 (257)
                      ...|+++......+.     ++..|++--+-+.   +.... ..+...|+++...+.....  ....+.+++|+.+|.+.
T Consensus      1241 ~~~R~k~Lr~kid~Fk~~I~ke~d~e~LsePlkemll~e~d-e~~~~~h~~~~~~p~rI~ps~s~ee~~r~~~~~~g~~f 1319 (2724)
T KOG1826|consen 1241 FHFRNKWLRSKIDWFKFSIYKEYDFENLSEPLKEMLLSERD-ELREAKHYLTEVDPLRIPPSESTEEYIRSLYVEFGKLF 1319 (2724)
T ss_pred             eeeccchHhhhhceeEEEeehhhhHHHHhhHHHHhhhhhhh-hhhhhhceeeecccccCCCCCChHHHHHHHHHHHhHHH
Confidence            356777777777663     3344433222222   22222 3345678988877776653  45778999999999999


Q ss_pred             HHHhccCCCCCC-HHHHHHHHHHH-HHHHHHHhhCCCC--CeeeccCCCCceeeCCCCceEEeeecccccCCCCc---cc
Q 044568           78 DIIFCSAERNPY-WNQRVRIALDV-AKGILYLHDECEP--PILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF---VI  150 (257)
Q Consensus        78 ~~l~~~~~~~l~-~~~~~~~~~~i-~~~l~~lh~~~~~--~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~---~~  150 (257)
                      +.|-++.....+ ........+++ +.+..-+|+..+.  --+|+++++.|.++..+..++++++|+.+......   ..
T Consensus      1320 ~iIikg~ee~~~ld~~~v~~~~kvsvl~~~~~ls~tnlg~T~v~~~Lkf~lpmIVtny~v~~gk~gLdKIknp~~sf~Gl 1399 (2724)
T KOG1826|consen 1320 SIIIKGLEESPDLDRSPVHLRHKVSVLNRNVILSLTNLGNTNVSKSLKFTLPMIVTNYNVKLGKGGLDKIKNPVLSFFGL 1399 (2724)
T ss_pred             HHHHhccccCCcchhchHHHHHHHHHhccchhhhcccCCccchhhhhhhhccceecCCcccccccccccccCchHhhhhh
Confidence            999764332222 12333444444 6777776766422  24789999999999999999999999987322221   33


Q ss_pred             ccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCC
Q 044568          151 DKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNME  192 (257)
Q Consensus       151 ~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~  192 (257)
                      ..+++-|+.|+....-.++.++|+|..|+-+|+...|..+|-
T Consensus      1400 ~l~sp~~v~qli~N~ik~t~rsdilr~s~~ly~rs~~n~~fi 1441 (2724)
T KOG1826|consen 1400 ELCSPIYVLQLIKNEIKFTKRSDILRRSLSLYLRSDGNAYFI 1441 (2724)
T ss_pred             hhCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccHHHH
Confidence            355556778887777778888999999999999998888873

>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]

Probab=96.22  E-value=0.025  Score=49.23  Aligned_cols=79  Identities=10%  Similarity=0.116  Sum_probs=59.1

Q ss_pred             ceeEEEeecCCCC-HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeeccc
Q 044568           63 VSGKIERPVRNGS-LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA  141 (257)
Q Consensus        63 ~~~lV~E~~~~gs-L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~  141 (257)
                      ...|||+|+..-. -.-.|   .+..++...+..+-.|++.-+.-|-+.|  +++|.||+--|+|+-+ |.+.++|.+-+
T Consensus       238 ~hVLVM~FlGrdgw~aPkL---Kd~~ls~~ka~~~Y~~~v~~MR~lY~~c--~LVHADLSEfN~Lyhd-G~lyiIDVSQS  311 (520)
T KOG2270|consen  238 NHVLVMEFLGRDGWAAPKL---KDASLSTSKARELYQQCVRIMRRLYQKC--RLVHADLSEFNLLYHD-GKLYIIDVSQS  311 (520)
T ss_pred             cceEeeeeccCCCCcCccc---ccccCChHHHHHHHHHHHHHHHHHHHHh--ceeccchhhhhheEEC-CEEEEEEcccc
Confidence            3458999995322 12222   3456777888889899999888888877  9999999999999875 48999999877


Q ss_pred             ccCCCC
Q 044568          142 KLPNED  147 (257)
Q Consensus       142 ~~~~~~  147 (257)
                      .....+
T Consensus       312 VE~DHP  317 (520)
T KOG2270|consen  312 VEHDHP  317 (520)
T ss_pred             ccCCCh
Confidence            654443

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=96.09  E-value=0.058  Score=43.05  Aligned_cols=97  Identities=14%  Similarity=0.096  Sum_probs=66.3

Q ss_pred             hhhhHHHHhHhh-hccccccccCCceeeeceeeeecCceeEEEeecCC------CCHHHHHhccCCCCCCHHHHHHHHHH
Q 044568           27 WTADIEVLSVAM-RGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRN------GSLTDIIFCSAERNPYWNQRVRIALD   99 (257)
Q Consensus        27 ~~~~~~~~~~~~-~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~------gsL~~~l~~~~~~~l~~~~~~~~~~~   99 (257)
                      ..+|++.+.... .+    ...+..|-++.|...+.-..++|+|...+      -+|.+++.+   ..++.    .+...
T Consensus        58 ~~~E~~~y~~l~~~~----~~~~~~i~r~~G~veT~~G~Glv~e~I~d~dG~~s~TL~~~l~~---~~~~~----~~~~~  126 (199)
T PF10707_consen   58 NRRELRYYKQLSLRR----GVDWSHIPRFYGFVETNLGLGLVVELIRDADGNISPTLEDYLKE---GGLTE----ELRQA  126 (199)
T ss_pred             HHHHHHHHHHHhhcc----CCcccccccEeEEEecCCceEEEEEEEECCCCCcCccHHHHHHc---CCccH----HHHHH
Confidence            345555444222 22    55677888999999999999999997632      278888843   34554    33333


Q ss_pred             HHHHHHHHhhCCCCCeeeccCCCCceeeCCCC----ceEEee
Q 044568          100 VAKGILYLHDECEPPILHCDIKPQNILMDEFW----TAKILD  137 (257)
Q Consensus       100 i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~----~~kl~d  137 (257)
                      +-.-..||-+.   +|+.+|++|.||++....    .+.++|
T Consensus       127 L~~f~~~l~~~---~Iv~~dl~~~NIv~~~~~~~~~~lvlID  165 (199)
T PF10707_consen  127 LDEFKRYLLDH---HIVIRDLNPHNIVVQRRDSGEFRLVLID  165 (199)
T ss_pred             HHHHHHHHHHc---CCeecCCCcccEEEEecCCCceEEEEEe
Confidence            33456777888   999999999999996432    466676

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>PLN02876 acyl-CoA dehydrogenase

Probab=95.88  E-value=0.13  Score=50.17  Aligned_cols=30  Identities=30%  Similarity=0.488  Sum_probs=23.7

Q ss_pred             CeeeccCCCCceeeCCC--CceEEeeeccccc
Q 044568          114 PILHCDIKPQNILMDEF--WTAKILDFGLAKL  143 (257)
Q Consensus       114 ~i~h~dl~~~nil~~~~--~~~kl~dfg~~~~  143 (257)
                      .++|+|.++.|++++.+  ...-|.|+..+..
T Consensus       226 ~LvHGD~~~~Nvl~~~~~~~v~aVLDWE~a~~  257 (822)
T PLN02876        226 GIVHGDFRIDNLVFHPTEDRVIGILDWELSTL  257 (822)
T ss_pred             ceEecCcccccEEEcCCCCeEEEEEeeecccc
Confidence            59999999999999752  2356889987654

>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]

Probab=95.82  E-value=0.019  Score=49.13  Aligned_cols=68  Identities=16%  Similarity=0.161  Sum_probs=49.4

Q ss_pred             ceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeeccc
Q 044568           63 VSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA  141 (257)
Q Consensus        63 ~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~  141 (257)
                      ..++|||+..+-.|.+.-+-        .....+...+..-+--|..+   |++|+|..--||++.++..++++||--.
T Consensus       182 RH~Vvmelv~g~Pl~~v~~v--------~d~~~ly~~lm~~Iv~la~~---GlIHgDFNEFNimv~dd~~i~vIDFPQm  249 (465)
T KOG2268|consen  182 RHCVVMELVDGYPLRQVRHV--------EDPPTLYDDLMGLIVRLANH---GLIHGDFNEFNIMVKDDDKIVVIDFPQM  249 (465)
T ss_pred             ceeeHHHhhcccceeeeeec--------CChHHHHHHHHHHHHHHHHc---CceecccchheeEEecCCCEEEeechHh
Confidence            34679999988777765421        11223444444445667778   9999999999999999999999999543

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=95.67  E-value=0.088  Score=46.64  Aligned_cols=28  Identities=29%  Similarity=0.445  Sum_probs=24.6

Q ss_pred             CeeeccCCCCceeeCCCCceEEeeecccc
Q 044568          114 PILHCDIKPQNILMDEFWTAKILDFGLAK  142 (257)
Q Consensus       114 ~i~h~dl~~~nil~~~~~~~kl~dfg~~~  142 (257)
                      .++|||+++.||++..+ .++++|+.++.
T Consensus       224 ~l~HgDl~~gni~~~~~-~~~viD~E~a~  251 (401)
T PRK09550        224 ALLHGDLHTGSIFVTEE-ETKVIDPEFAF  251 (401)
T ss_pred             ceeeccCCcccEEeeCC-CcEEEeccccc
Confidence            78999999999999876 68999998664

>PRK10593 hypothetical protein; Provisional

Probab=95.55  E-value=0.24  Score=42.14  Aligned_cols=28  Identities=18%  Similarity=0.226  Sum_probs=21.7

Q ss_pred             CCCeeeccCCCCceeeCCC-Cc-eEEeeec
Q 044568          112 EPPILHCDIKPQNILMDEF-WT-AKILDFG  139 (257)
Q Consensus       112 ~~~i~h~dl~~~nil~~~~-~~-~kl~dfg  139 (257)
                      .+.++|||+++.|++++.+ +. +.+.|..
T Consensus       192 ~psLlHGDlw~gNvl~~~~~~~i~~liDPa  221 (297)
T PRK10593        192 NCVLVHGNFTLRSMLKDPRSDQLLAMLNPG  221 (297)
T ss_pred             CCeeEeCCCCcccEEECCCCCceEEEECch
Confidence            3578999999999999854 33 5677765

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=95.28  E-value=0.06  Score=45.58  Aligned_cols=28  Identities=25%  Similarity=0.340  Sum_probs=18.9

Q ss_pred             CCCeeeccCCCCceeeCCCCceEEeeec
Q 044568          112 EPPILHCDIKPQNILMDEFWTAKILDFG  139 (257)
Q Consensus       112 ~~~i~h~dl~~~nil~~~~~~~kl~dfg  139 (257)
                      .|.++|+||.+.|++.+.++.+.|.|-.
T Consensus       187 ~PsLlHGDLW~GN~~~~~~g~p~l~DPa  214 (288)
T PF03881_consen  187 KPSLLHGDLWSGNVGFDADGEPVLFDPA  214 (288)
T ss_dssp             --EEE-SS-SGGGEEEETTE-EEE-S--
T ss_pred             CceeeEcCccccceeecCCCCceeeccc
Confidence            5678999999999999999889998854

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=95.23  E-value=0.12  Score=40.32  Aligned_cols=115  Identities=14%  Similarity=0.095  Sum_probs=70.4

Q ss_pred             cccceeeecccCCCCCeee------ccchhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHH
Q 044568            5 KLSNFYRSSFNARNSPWIS------RVSWTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTD   78 (257)
Q Consensus         5 ~~~~~y~~~~~~~~~~~i~------~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~   78 (257)
                      -.|+||.|.+..+...+..      +.++..|.+++....         .   ..+.......+..++.|||..|-+|.+
T Consensus        34 ~~s~Vyl~~~~~~~~a~Kvrr~ds~r~~l~kEakiLeil~---------g---~~~~p~vy~yg~~~i~me~i~G~~L~~  101 (201)
T COG2112          34 TTSVVYLGEWRGGEVALKVRRRDSPRRNLEKEAKILEILA---------G---EGVTPEVYFYGEDFIRMEYIDGRPLGK  101 (201)
T ss_pred             cccEEEEeeccCceEEEEEecCCcchhhHHHHHHHHHHhh---------h---cCCCceEEEechhhhhhhhhcCcchhh
Confidence            3688999988776433332      244678888777221         1   122333344555667799999888887


Q ss_pred             HHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCC-ceeeCCCCceEEeeeccccc
Q 044568           79 IIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQ-NILMDEFWTAKILDFGLAKL  143 (257)
Q Consensus        79 ~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~-nil~~~~~~~kl~dfg~~~~  143 (257)
                      .-..     .+    .+-...+++...-|-..   ||-|+.++-. ..++.++..+.|+||.-+..
T Consensus       102 ~~~~-----~~----rk~l~~vlE~a~~LD~~---GI~H~El~~~~k~vlv~~~~~~iIDFd~At~  155 (201)
T COG2112         102 LEIG-----GD----RKHLLRVLEKAYKLDRL---GIEHGELSRPWKNVLVNDRDVYIIDFDSATF  155 (201)
T ss_pred             hhhc-----cc----HHHHHHHHHHHHHHHHh---ccchhhhcCCceeEEecCCcEEEEEccchhh
Confidence            7642     11    22334455554445555   9999988643 33444445999999988763

>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

Probab=94.85  E-value=0.064  Score=46.67  Aligned_cols=71  Identities=17%  Similarity=0.175  Sum_probs=53.8

Q ss_pred             ceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccc
Q 044568           63 VSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK  142 (257)
Q Consensus        63 ~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~  142 (257)
                      ..+++|++- |+++.-+      ..-.+.++..++.+.+.-+.-+..+  ...-|||+.-.||+++ .|.+.|+||.+++
T Consensus       300 y~yl~~kdh-gt~is~i------k~~~~~e~lsff~s~~sil~~lekk--f~fehrnlt~~niLId-~GnvtLIDfklsR  369 (488)
T COG5072         300 YLYLHFKDH-GTPISII------KADRSEEELSFFWSCISILDILEKK--FPFEHRNLTLDNILID-EGNVTLIDFKLSR  369 (488)
T ss_pred             EEEEEEecC-Cceeeee------ecccHHHHHHHHHHHHHHHhhhhhc--CCcccccccccceeee-cCceEEEEeeeee
Confidence            345666655 3344322      1235688999999888877777766  4889999999999999 8899999999988


Q ss_pred             c
Q 044568          143 L  143 (257)
Q Consensus       143 ~  143 (257)
                      .
T Consensus       370 l  370 (488)
T COG5072         370 L  370 (488)
T ss_pred             c
Confidence            4

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=93.99  E-value=0.3  Score=41.95  Aligned_cols=33  Identities=33%  Similarity=0.603  Sum_probs=28.6

Q ss_pred             CCCeeeccCCCCceeeCCCCceEEeeecccccC
Q 044568          112 EPPILHCDIKPQNILMDEFWTAKILDFGLAKLP  144 (257)
Q Consensus       112 ~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~  144 (257)
                      .+.++|+|+++.|+++++..-+-+.||+.+...
T Consensus       197 ~~~lvHGD~~~gNlii~~~~~~gVlDwe~~~lG  229 (321)
T COG3173         197 PPVLVHGDYRPGNLIIDPGRPTGVLDWELATLG  229 (321)
T ss_pred             CceeeeCCcccCCEEEeCCCeeEEEeccccccC
Confidence            347999999999999999888999999987643

>PLN02756 S-methyl-5-thioribose kinase

Probab=93.71  E-value=0.87  Score=40.54  Aligned_cols=30  Identities=13%  Similarity=0.281  Sum_probs=24.6

Q ss_pred             CCCeeeccCCCCceeeCCCCceEEeeecccc
Q 044568          112 EPPILHCDIKPQNILMDEFWTAKILDFGLAK  142 (257)
Q Consensus       112 ~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~  142 (257)
                      .+.++|||+++.||++.+++ .+++|..++.
T Consensus       229 ~~~L~HGDl~~g~i~~~~~~-~~~id~ef~~  258 (418)
T PLN02756        229 AQALVHGDLHTGSVMVTPDS-TQVIDPEFAF  258 (418)
T ss_pred             ccceeecCCCCCcEEEcCCC-ceEecchhhc
Confidence            45899999999999999874 7888876553

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=92.75  E-value=0.11  Score=42.40  Aligned_cols=30  Identities=30%  Similarity=0.584  Sum_probs=25.5

Q ss_pred             CCeeeccCCCCceeeCCCCceEEeeecccc
Q 044568          113 PPILHCDIKPQNILMDEFWTAKILDFGLAK  142 (257)
Q Consensus       113 ~~i~h~dl~~~nil~~~~~~~kl~dfg~~~  142 (257)
                      +.++|+|+.+.|++++++....++||+.+.
T Consensus       164 ~~l~HGD~~~~Nvlv~~~~i~giIDw~~a~  193 (235)
T cd05155         164 PVWFHGDLAPGNLLVQDGRLSAVIDFGCLG  193 (235)
T ss_pred             ceEEeCCCCCCcEEEECCCEEEEEeCcccC
Confidence            368999999999999987666799999764

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=92.02  E-value=0.26  Score=41.95  Aligned_cols=30  Identities=30%  Similarity=0.500  Sum_probs=26.3

Q ss_pred             CCeeeccCCCCceeeCCCCceEEeeecccc
Q 044568          113 PPILHCDIKPQNILMDEFWTAKILDFGLAK  142 (257)
Q Consensus       113 ~~i~h~dl~~~nil~~~~~~~kl~dfg~~~  142 (257)
                      .+++|+|+++.|+++++++...++||+.+.
T Consensus       187 ~~l~HgD~~~~Nvl~~~~~~~~vIDfd~~~  216 (307)
T TIGR00938       187 RGVIHADLFPDNVLFDGDSVKGVIDFYFAC  216 (307)
T ss_pred             CccCCCCCCcCcEEEECCceEEEeeccccc
Confidence            389999999999999988767899998764

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>PF07387 Seadorna_VP7: Seadornavirus VP7; InterPro: IPR009973 This family consists of several Seadornavirus specific VP7 proteins of around 305 residues in length

Probab=91.76  E-value=0.18  Score=41.00  Aligned_cols=66  Identities=23%  Similarity=0.221  Sum_probs=45.9

Q ss_pred             ecCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeec
Q 044568           60 LTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFG  139 (257)
Q Consensus        60 ~~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg  139 (257)
                      +.-..+++.|.|...           ..++.    .++.--+.+|.-.|+. +.+.+|+|..|+||+-|+.|.+||.|-+
T Consensus       125 n~~~yGvIlE~Cy~~-----------~i~~~----N~i~agi~~L~~fH~~-~~~~lHGD~np~NiM~D~~G~lKlVDP~  188 (308)
T PF07387_consen  125 NNYKYGVILERCYKI-----------KINFS----NFITAGIKDLMDFHSE-NQHCLHGDCNPDNIMCDKFGYLKLVDPV  188 (308)
T ss_pred             CCceeEEEEeeccCc-----------ccchh----HHHHHhHHHHHHhhcc-CCCeecCCCChhheeecCCCCEEecChh
Confidence            444667888988432           11111    1222224667888965 5699999999999999999999999976


Q ss_pred             cc
Q 044568          140 LA  141 (257)
Q Consensus       140 ~~  141 (257)
                      ..
T Consensus       189 ~L  190 (308)
T PF07387_consen  189 CL  190 (308)
T ss_pred             hh
Confidence            53

The function of this family is unknown.

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=91.32  E-value=0.57  Score=39.66  Aligned_cols=31  Identities=26%  Similarity=0.297  Sum_probs=26.6

Q ss_pred             CCCeeeccCCCCceeeCCC----CceEEeeecccc
Q 044568          112 EPPILHCDIKPQNILMDEF----WTAKILDFGLAK  142 (257)
Q Consensus       112 ~~~i~h~dl~~~nil~~~~----~~~kl~dfg~~~  142 (257)
                      ...++|+|+.+.||+++++    +.+.++||..+.
T Consensus       178 ~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya~  212 (302)
T cd05156         178 PVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYAS  212 (302)
T ss_pred             CceEEecCCCcCeEEecCCCCCCCcEEEEeeCCCC
Confidence            3478999999999999874    789999998764

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=91.11  E-value=0.53  Score=39.96  Aligned_cols=29  Identities=24%  Similarity=0.377  Sum_probs=25.0

Q ss_pred             CCeeeccCCCCceeeCCCCceEEeeecccc
Q 044568          113 PPILHCDIKPQNILMDEFWTAKILDFGLAK  142 (257)
Q Consensus       113 ~~i~h~dl~~~nil~~~~~~~kl~dfg~~~  142 (257)
                      .+++|+|+.+.|++++. +.+.++||+.+.
T Consensus       187 ~~liHgD~~~~Nil~~~-~~i~lIDfd~~~  215 (313)
T TIGR02906       187 RGFCHQDYAYHNILLKD-NEVYVIDFDYCT  215 (313)
T ss_pred             CceEcCCCCcccEEEeC-CcEEEEECcccc
Confidence            38899999999999987 578899998654

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>PRK05231 homoserine kinase; Provisional

Probab=90.97  E-value=0.16  Score=43.45  Aligned_cols=29  Identities=24%  Similarity=0.405  Sum_probs=25.4

Q ss_pred             CeeeccCCCCceeeCCCCceEEeeecccc
Q 044568          114 PILHCDIKPQNILMDEFWTAKILDFGLAK  142 (257)
Q Consensus       114 ~i~h~dl~~~nil~~~~~~~kl~dfg~~~  142 (257)
                      +++|+|+.+.||+++++....++||+.+.
T Consensus       188 ~liHgD~~~~Nil~~~~~~~~iIDf~~~~  216 (319)
T PRK05231        188 GVIHADLFRDNVLFEGDRLSGFIDFYFAC  216 (319)
T ss_pred             ccCCCCCCCCcEEEECCceEEEEeccccc
Confidence            89999999999999977556899998764

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=90.79  E-value=0.4  Score=38.91  Aligned_cols=29  Identities=28%  Similarity=0.402  Sum_probs=25.6

Q ss_pred             CeeeccCCCCceeeCC-CCceEEeeecccc
Q 044568          114 PILHCDIKPQNILMDE-FWTAKILDFGLAK  142 (257)
Q Consensus       114 ~i~h~dl~~~nil~~~-~~~~kl~dfg~~~  142 (257)
                      .++|+|+.+.||++++ +..+.++||..+.
T Consensus       171 ~l~H~Dl~~~Nil~~~~~~~~~lIDwe~a~  200 (235)
T cd05157         171 VFCHNDLLSGNIIYNEEKNSVKFIDYEYAG  200 (235)
T ss_pred             EEEcCCCCcCcEEEeCCCCCEEEEEcccCC
Confidence            6899999999999997 5789999998664

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=90.49  E-value=0.43  Score=40.21  Aligned_cols=29  Identities=28%  Similarity=0.421  Sum_probs=25.8

Q ss_pred             CeeeccCCCCceeeCCCCceEEeeecccc
Q 044568          114 PILHCDIKPQNILMDEFWTAKILDFGLAK  142 (257)
Q Consensus       114 ~i~h~dl~~~nil~~~~~~~kl~dfg~~~  142 (257)
                      +++|+|+.|.|++++++..+.++||+.+.
T Consensus       176 ~l~HgD~~~~Nil~~~~~~~~iIDfe~a~  204 (296)
T cd05153         176 GVIHADLFRDNVLFDGDELSGVIDFYFAC  204 (296)
T ss_pred             cCCccCcCcccEEEeCCceEEEeehhhhc
Confidence            79999999999999988777899998764

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>PRK10271 thiK thiamine kinase; Provisional

Probab=89.06  E-value=0.32  Score=38.34  Aligned_cols=29  Identities=21%  Similarity=0.314  Sum_probs=25.0

Q ss_pred             CeeeccCCCCceeeCCCCceEEeeeccccc
Q 044568          114 PILHCDIKPQNILMDEFWTAKILDFGLAKL  143 (257)
Q Consensus       114 ~i~h~dl~~~nil~~~~~~~kl~dfg~~~~  143 (257)
                      ..+|+|+.|.|+++.+++ ++++|++.+..
T Consensus        78 ~p~H~D~~~~N~~~~~~~-~~lIDwe~a~~  106 (188)
T PRK10271         78 APLHMDVHAGNLVHSASG-LRLIDWEYAGD  106 (188)
T ss_pred             eeecCCCCCccEEEECCC-EEEEeCCcccC
Confidence            569999999999998876 88999987653

>TIGR02721 ycfN_thiK thiamine kinase

Probab=88.83  E-value=0.34  Score=40.06  Aligned_cols=28  Identities=25%  Similarity=0.409  Sum_probs=24.6

Q ss_pred             CeeeccCCCCceeeCCCCceEEeeecccc
Q 044568          114 PILHCDIKPQNILMDEFWTAKILDFGLAK  142 (257)
Q Consensus       114 ~i~h~dl~~~nil~~~~~~~kl~dfg~~~  142 (257)
                      .++|+|+.+.||++++++ +.++||..+.
T Consensus       147 ~l~H~Dl~~~Nil~~~~~-~~lIDwE~a~  174 (256)
T TIGR02721       147 APLHMDVHAYNLVVTPQG-LKLIDWEYAS  174 (256)
T ss_pred             eeecCCCCcCcEEEeCCC-CEEEeccccC
Confidence            689999999999999876 7899998764

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]

Probab=87.29  E-value=1.5  Score=37.86  Aligned_cols=28  Identities=36%  Similarity=0.622  Sum_probs=24.9

Q ss_pred             eeeccCCCCceeeCCCCc-eEEeeecccc
Q 044568          115 ILHCDIKPQNILMDEFWT-AKILDFGLAK  142 (257)
Q Consensus       115 i~h~dl~~~nil~~~~~~-~kl~dfg~~~  142 (257)
                      ++|+|+.+.||+++.+.. ..++||+-+.
T Consensus       199 iIH~D~~~~NVl~d~~~~~~g~iDFdDa~  227 (331)
T COG2334         199 IIHGDLHPDNVLFDDDTDVSGFIDFDDAG  227 (331)
T ss_pred             eeecCCCccceeEcCCCCeeeEEEccccc
Confidence            899999999999998874 8899998764

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=86.95  E-value=0.61  Score=39.22  Aligned_cols=29  Identities=34%  Similarity=0.556  Sum_probs=24.5

Q ss_pred             CeeeccCCCCceeeCCCCc-eEEeeecccc
Q 044568          114 PILHCDIKPQNILMDEFWT-AKILDFGLAK  142 (257)
Q Consensus       114 ~i~h~dl~~~nil~~~~~~-~kl~dfg~~~  142 (257)
                      .++|+|+++.|+++++++. ..++||+.+.
T Consensus       186 ~lvHGD~~~~Nilv~~~~~~~gviDWe~a~  215 (276)
T cd05152         186 VLVHGDLHPGHILIDEDARVTGLIDWTEAK  215 (276)
T ss_pred             eeEeCCCCCCcEEEeCCCCEEEEECcHhcc
Confidence            6899999999999997444 5699999775

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>KOG1236 consensus Predicted unusual protein kinase [General function prediction only]

Probab=86.92  E-value=1.9  Score=38.49  Aligned_cols=61  Identities=16%  Similarity=0.118  Sum_probs=44.0

Q ss_pred             CceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHH-HHHhhCCCCCeeeccCCCCceeeC
Q 044568           62 SVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGI-LYLHDECEPPILHCDIKPQNILMD  128 (257)
Q Consensus        62 ~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l-~~lh~~~~~~i~h~dl~~~nil~~  128 (257)
                      ....|+-+|++|.++..++.   ....++..+..++.--+.|+ ..+--.   +.+|.|++|.||++.
T Consensus       318 ~~~vl~E~~~~Gl~v~~~v~---~~~~pe~l~kkva~lg~~AllkMl~vD---NFvHaDlHPGNVlir  379 (565)
T KOG1236|consen  318 TDLVLVETYERGLSVLRFVK---WKSQPEALVKKVAKLGVNALLKMLIVD---NFVHADLHPGNVLIR  379 (565)
T ss_pred             ccceeeeeccccccHHhhhh---cccChHHHHHHHHHHHHHHHHHHHHhh---cceecccCCCcEEEE
Confidence            34456778999999999995   34455556666666666665 333444   899999999999985

>COG3001 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.81  E-value=5  Score=33.07  Aligned_cols=26  Identities=27%  Similarity=0.326  Sum_probs=21.8

Q ss_pred             CCCeeeccCCCCceeeCCCCceEEeee
Q 044568          112 EPPILHCDIKPQNILMDEFWTAKILDF  138 (257)
Q Consensus       112 ~~~i~h~dl~~~nil~~~~~~~kl~df  138 (257)
                      .|..+|+||...|+....++ +.+.|-
T Consensus       186 qPsLlHGDLW~gN~a~~~~G-Pv~fDP  211 (286)
T COG3001         186 QPSLLHGDLWSGNCAFGKDG-PVIFDP  211 (286)
T ss_pred             CcceeecccccccccccCCC-Ceeecc
Confidence            46899999999999999887 666563

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=85.78  E-value=0.52  Score=37.70  Aligned_cols=29  Identities=34%  Similarity=0.541  Sum_probs=20.3

Q ss_pred             CeeeccCCCCceee-CCCCceEEeeecccc
Q 044568          114 PILHCDIKPQNILM-DEFWTAKILDFGLAK  142 (257)
Q Consensus       114 ~i~h~dl~~~nil~-~~~~~~kl~dfg~~~  142 (257)
                      .+.|+|+.+.||++ ..++.++++||..+.
T Consensus       144 v~cHnDl~~~Nil~~~~~~~~~lIDfEya~  173 (211)
T PF01633_consen  144 VFCHNDLNPGNILINNKDGEVKLIDFEYAG  173 (211)
T ss_dssp             EEE-S--SGGGEEETSSSSCEEE--GTT-E
T ss_pred             eEeeccCccccEEeccCCCeEEEecHHHHh
Confidence            67899999999999 778899999998764

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>smart00587 CHK ZnF_C4 abd HLH domain containing kinases domain

Probab=84.94  E-value=0.93  Score=35.92  Aligned_cols=29  Identities=24%  Similarity=0.335  Sum_probs=24.3

Q ss_pred             CeeeccCCCCceeeCCCC-----ceEEeeecccc
Q 044568          114 PILHCDIKPQNILMDEFW-----TAKILDFGLAK  142 (257)
Q Consensus       114 ~i~h~dl~~~nil~~~~~-----~~kl~dfg~~~  142 (257)
                      .++|||+.+.|+++..+.     .+.++||..+.
T Consensus       121 vl~HgD~~~~N~~~~~~~~~~~~~~~liDfq~~~  154 (196)
T smart00587      121 VLNHGDLWANNIMFKYDDEGKPEDVALIDFQLSH  154 (196)
T ss_pred             EEeeCCCCccceeeccCCCCCccceEEEecccCC
Confidence            789999999999997543     57899998765

subfamily of choline kinases

>TIGR02904 spore_ysxE spore coat protein YsxE

Probab=84.38  E-value=0.62  Score=39.71  Aligned_cols=30  Identities=20%  Similarity=0.319  Sum_probs=26.8

Q ss_pred             CCeeeccCCCCceeeCCCCceEEeeecccc
Q 044568          113 PPILHCDIKPQNILMDEFWTAKILDFGLAK  142 (257)
Q Consensus       113 ~~i~h~dl~~~nil~~~~~~~kl~dfg~~~  142 (257)
                      .+++|+|+.++|+++++++.+.++||..+.
T Consensus       196 ~~lcHgD~~~~Nvl~~~~~~~~iIDfd~~~  225 (309)
T TIGR02904       196 TVLVHGKLSLSHFLYDETRGGYFINFEKAS  225 (309)
T ss_pred             eeeeCCCCcHHhEEEcCCCCEEEEEhhhcc
Confidence            379999999999999988889999998764

Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat.

>COG0510 ycfN Thiamine kinase and related kinases [Coenzyme transport and metabolism]

Probab=84.30  E-value=0.9  Score=38.06  Aligned_cols=29  Identities=24%  Similarity=0.355  Sum_probs=26.4

Q ss_pred             CeeeccCCCCceeeCCCCceEEeeecccc
Q 044568          114 PILHCDIKPQNILMDEFWTAKILDFGLAK  142 (257)
Q Consensus       114 ~i~h~dl~~~nil~~~~~~~kl~dfg~~~  142 (257)
                      -.+|+|+.+.|++.++.+.++|+||..+.
T Consensus       154 v~cH~Dl~~~N~l~t~~~~l~LIDWEyAg  182 (269)
T COG0510         154 VPCHNDLNPGNLLLTDKGGLFLIDWEYAG  182 (269)
T ss_pred             eeecCCCCccceEEcCCCcEEEEecccCC
Confidence            48999999999999998899999998764

>TIGR01767 MTRK 5-methylthioribose kinase

Probab=83.81  E-value=3.4  Score=36.19  Aligned_cols=29  Identities=28%  Similarity=0.474  Sum_probs=24.2

Q ss_pred             CCeeeccCCCCceeeCCCCceEEeeecccc
Q 044568          113 PPILHCDIKPQNILMDEFWTAKILDFGLAK  142 (257)
Q Consensus       113 ~~i~h~dl~~~nil~~~~~~~kl~dfg~~~  142 (257)
                      ..++|||+.+.||++.++ .++++|+..+.
T Consensus       192 ~~llHGDl~~gNi~~~~~-~~~~iD~e~~~  220 (370)
T TIGR01767       192 ETLLHGDLHSGSIFVSEH-ETKVIDPEFAF  220 (370)
T ss_pred             ceeeeccCCcccEEEcCC-CCEEEcCcccc
Confidence            378999999999999876 57789987654

This enzyme is involved in the methionine salvage pathway in certain bacteria.

>PLN02236 choline kinase

Probab=83.39  E-value=2  Score=37.36  Aligned_cols=29  Identities=31%  Similarity=0.493  Sum_probs=25.3

Q ss_pred             CeeeccCCCCceeeCC-CCceEEeeecccc
Q 044568          114 PILHCDIKPQNILMDE-FWTAKILDFGLAK  142 (257)
Q Consensus       114 ~i~h~dl~~~nil~~~-~~~~kl~dfg~~~  142 (257)
                      .++|+|+++.||++++ ++.+.++||..+.
T Consensus       201 ~~cH~Dl~~~Nil~~~~~~~~~lID~Eya~  230 (344)
T PLN02236        201 GFCHNDLQYGNIMIDEETRAITIIDYEYAS  230 (344)
T ss_pred             eEEeCCCCcCcEEEeCCCCcEEEEeehhcc
Confidence            6899999999999986 4679999998765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	257
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		3e-26
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		3e-26
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		1e-18
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		1e-18
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		3e-17
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		4e-17
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		5e-17
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		2e-16
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		6e-16
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		2e-15
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		2e-10
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		2e-10
3omv_A	307	Crystal Structure Of C-Raf (Raf-1) Length = 307		4e-09
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		5e-09
3ii5_A	306	The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi		5e-09
3s95_A	310	Crystal Structure Of The Human Limk1 Kinase Domain		5e-09
3q96_A	282	B-Raf Kinase Domain In Complex With A Tetrahydronap		5e-09
4dbn_A	284	Crystal Structure Of The Kinase Domain Of Human B-R		5e-09
2fb8_A	281	Structure Of The B-Raf Kinase Domain Bound To Sb-59		6e-09
3q4t_A	322	Crystal Structure Of Activin Receptor Type-Iia (Acv		6e-09
1uwh_A	276	The Complex Of Wild Type B-Raf And Bay439006 Length		6e-09
4h58_A	275	Braf In Complex With Compound 3 Length = 275		6e-09
4g9r_A	307	B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr		1e-08
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		1e-08
3idp_A	300	B-Raf V600e Kinase Domain In Complex With An Aminoi		1e-08
1uwj_A	276	The Complex Of Mutant V599e B-raf And Bay439006 Len		2e-08
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		3e-08
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		3e-08
1zy4_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		3e-08
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		4e-08
1qpd_A	279	Structural Analysis Of The Lymphocyte-specific Kina		5e-08
3cok_A	278	Crystal Structure Of Plk4 Kinase Length = 278		5e-08
2og8_A	265	Crystal Structure Of Aminoquinazoline 36 Bound To L		5e-08
3pls_A	298	Ron In Complex With Ligand Amp-Pnp Length = 298		5e-08
3bym_A	272	X-Ray Co-Crystal Structure Aminobenzimidazole Triaz		5e-08
3lck_A	271	The Kinase Domain Of Human Lymphocyte Kinase (Lck),		6e-08
2ofu_A	273	X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam		6e-08
2of2_A	271	Crystal Structure Of Furanopyrimidine 8 Bound To Lc		6e-08
3kmm_A	288	Structure Of Human Lck Kinase With A Small Molecule		6e-08
3bys_A	277	Co-Crystal Structure Of Lck And Aminopyrimidine Ami		6e-08
2ofv_A	277	Crystal Structure Of Aminoquinazoline 1 Bound To Lc		7e-08
2zm1_A	285	Crystal Structure Of Imidazo Pyrazin 1 Bound To The		7e-08
3kxz_A	287	The Complex Crystal Structure Of Lck With A Probe M		7e-08
2pl0_A	289	Lck Bound To Imatinib Length = 289		7e-08
1qpe_A	279	Structural Analysis Of The Lymphocyte-Specific Kina		7e-08
4eqm_A	294	Structural Analysis Of Staphylococcus Aureus Serine		8e-08
2w5a_A	279	Human Nek2 Kinase Adp-Bound Length = 279		1e-07
2jav_A	279	Human Kinase With Pyrrole-Indolinone Ligand Length		1e-07
4an2_A	301	Crystal Structures Of Human Mek1 With Carboxamide-B		1e-07
3fme_A	290	Crystal Structure Of Human Mitogen-Activated Protei		2e-07
4a4x_A	279	Nek2-Ede Bound To Cct248662 Length = 279		2e-07
3mpm_A	267	Lck Complexed With A Pyrazolopyrimidine Length = 26		2e-07
2z7q_A	321	Crystal Structure Of The N-Terminal Kinase Domain O		2e-07
1s9i_A	354	X-Ray Structure Of The Human Mitogen-Activated Prot		3e-07
1zyc_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		4e-07
2qlu_A	314	Crystal Structure Of Activin Receptor Type Ii Kinas		4e-07
3sls_A	304	Crystal Structure Of Human Mek-1 Kinase In Complex		4e-07
2wd1_A	292	Human C-Met Kinase In Complex With Azaindole Inhibi		5e-07
3lq8_A	302	Structure Of The Kinase Domain Of C-Met Bound To Xl		5e-07
2y4i_C	395	Ksr2-Mek1 Heterodimer Length = 395		5e-07
3i5n_A	309	Crystal Structure Of C-Met With Triazolopyridazine		5e-07
2rfn_A	310	X-ray Structure Of C-met With Inhibitor. Length = 3		5e-07
3q6u_A	308	Structure Of The Apo Met Receptor Kinase In The Dua		5e-07
4gg5_A	319	Crystal Structure Of Cmet In Complex With Novel Inh		5e-07
2g15_A	318	Structural Characterization Of Autoinhibited C-Met		5e-07
3f66_A	298	Human C-Met Kinase In Complex With Quinoxaline Inhi		5e-07
3vn9_A	340	Rifined Crystal Structure Of Non-Phosphorylated Map		5e-07
2wgj_A	306	X-Ray Structure Of Pf-02341066 Bound To The Kinase		6e-07
2oo8_X	317	Synthesis, Structural Analysis, And Sar Studies Of		6e-07
1fvr_A	327	Tie2 Kinase Domain Length = 327		6e-07
3eqc_A	360	X-Ray Structure Of The Human Mitogen-Activated Prot		7e-07
1k3a_A	299	Structure Of The Insulin-Like Growth Factor 1 Recep		7e-07
3dkg_A	317	Sgx Clone 5698a109kfg1h1 Length = 317		7e-07
3orn_A	307	Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In		8e-07
3dkc_A	317	Sgx Clone 5698a65kfg1h1 Length = 317		8e-07
3lm0_A	327	Crystal Structure Of Human SerineTHREONINE KINASE 1		8e-07
1s9j_A	341	X-Ray Structure Of The Human Mitogen-Activated Prot		8e-07
2z8c_A	303	Phosphorylated Insulin Receptor Tyrosine Kinase In		8e-07
2zm3_A	308	Complex Structure Of Insulin-Like Growth Factor Rec		8e-07
2p55_A	333	X-Ray Structure Of The Human Mitogen-Activated Prot		8e-07
3ckx_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		8e-07
3a4p_A	319	Human C-Met Kinase Domain Complexed With 6-Benzylox		9e-07
3cth_A	314	Crystal Structure Of The Tyrosine Kinase Domain Of		9e-07
3ckw_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		9e-07
1r0p_A	312	Crystal Structure Of The Tyrosine Kinase Domain Of		9e-07
3mbl_A	328	Crystal Structure Of The Human Mitogen-Activated Pr		9e-07
3dv3_A	322	Mek1 With Pf-04622664 Bound Length = 322		9e-07
1i44_A	306	Crystallographic Studies Of An Activation Loop Muta		9e-07
3zhp_C	294	Human Mst3 (stk24) In Complex With Mo25beta Length		9e-07
3a7f_A	303	Human Mst3 Kinase Length = 303		9e-07
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		1e-06
1ir3_A	306	Phosphorylated Insulin Receptor Tyrosine Kinase In		1e-06
3qti_A	314	C-Met Kinase In Complex With Nvp-Bvu972 Length = 31		1e-06
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		1e-06
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		1e-06
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		1e-06
1rqq_A	306	Crystal Structure Of The Insulin Receptor Kinase In		1e-06
3c1x_A	373	Crystal Structure Of The Tyrosine Kinase Domain Of		1e-06
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		1e-06
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		1e-06
3o23_A	305	Human Unphosphorylated Igf1-R Kinase Domain In Comp		1e-06
3qqu_A	301	Cocrystal Structure Of Unphosphorylated Igf With Py		1e-06
3q6w_A	307	Structure Of Dually-phosphorylated Met Receptor Kin		1e-06
1jqh_A	308	Igf-1 Receptor Kinase Domain Length = 308		1e-06
1irk_A	306	Crystal Structure Of The Tyrosine Kinase Domain Of		1e-06
3lw0_A	304	Igf-1rk In Complex With Ligand Msc1609119a-1 Length		1e-06
2oj9_A	307	Structure Of Igf-1r Kinase Domain Complexed With A		1e-06
3zgw_A	347	Crystal Structure Of Maternal Embryonic Leucine Zip		1e-06
3i81_A	315	Crystal Structure Of Insulin-Like Growth Factor 1 R		1e-06
1a06_A	332	Calmodulin-Dependent Protein Kinase From Rat Length		1e-06
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		1e-06
3lvp_A	336	Crystal Structure Of Bisphosphorylated Igf1-R Kinas		2e-06
3eta_A	317	Kinase Domain Of Insulin Receptor Complexed With A		2e-06
4fg9_A	320	Crystal Structure Of Human Calcium/calmodulin-depen		2e-06
2f57_A	317	Crystal Structure Of The Human P21-activated Kinase		2e-06
1p4o_A	322	Structure Of Apo Unactivated Igf-1r Kinase Domain A		2e-06
4fg8_A	315	Crystal Structure Of Human Calcium/calmodulin-depen		2e-06
1m7n_A	322	Crystal Structure Of Unactivated Apo Insulin-Like G		2e-06
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		2e-06
4fg7_A	293	Crystal Structure Of Human Calcium/calmodulin-depen		2e-06
2wqb_A	324	Structure Of The Tie2 Kinase Domain In Complex With		2e-06
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		2e-06
3lxn_A	318	Structural And Thermodynamic Characterization Of Th		2e-06
1zxe_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		2e-06
4f0f_A	287	Crystal Structure Of The Roco4 Kinase Domain Bound		2e-06
3aln_A	327	Crystal Structure Of Human Non-Phosphorylated Mkk4		2e-06
2xik_A	294	Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related K		2e-06
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		2e-06
3d94_A	301	Crystal Structure Of The Insulin-Like Growth Factor		3e-06
3q5i_A	504	Crystal Structure Of Pbanka_031420 Length = 504		3e-06
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		3e-06
3eyg_A	290	Crystal Structures Of Jak1 And Jak2 Inhibitor Compl		3e-06
4apc_A	350	Crystal Structure Of Human Nima-Related Kinase 1 (N		3e-06
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		3e-06
4ft3_A	279	Crystal Structure Of The Chk1 Length = 279		3e-06
4fsz_A	279	Crystal Structure Of The Chk1 Length = 279		3e-06
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		3e-06
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		3e-06
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		3e-06
1yol_A	283	Crystal Structure Of Src Kinase Domain In Complex W		3e-06
4fsw_A	279	Crystal Structure Of The Chk1 Length = 279		3e-06
4el9_A	305	Structure Of N-Terminal Kinase Domain Of Rsk2 With		3e-06
3ubd_A	304	Structure Of N-Terminal Domain Of Rsk2 Kinase In Co		3e-06
2ydj_A	276	Discovery Of Checkpoint Kinase Inhibitor Azd7762 By		3e-06
4e4l_A	302	Jak1 Kinase (Jh1 Domain) In Complex With Compound 3		3e-06
3svv_A	286	Crystal Structure Of T338c C-Src Covalently Bound T		3e-06
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		3e-06
2r0u_A	323	Crystal Structure Of Chek1 In Complex With Inhibito		3e-06
2hog_A	322	Crystal Structure Of Chek1 In Complex With Inhibito		3e-06
3o17_A	370	Crystal Structure Of Jnk1-Alpha1 Isoform Length = 3		4e-06
4fst_A	269	Crystal Structure Of The Chk1 Length = 269		4e-06
2xa4_A	298	Inhibitors Of Jak2 Kinase Domain Length = 298		4e-06
1ua2_A	346	Crystal Structure Of Human Cdk7 Length = 346		4e-06
3g51_A	325	Structural Diversity Of The Active Conformation Of		4e-06
3enm_A	316	The Structure Of The Map2k Mek6 Reveals An Autoinhi		4e-06
3nyx_A	302	Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-T		4e-06
2i1m_A	333	Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An		4e-06
2br1_A	297	Structure-Based Design Of Novel Chk1 Inhibitors: In		4e-06
1ia8_A	289	The 1.7 A Crystal Structure Of Human Cell Cycle Che		4e-06
1zlt_A	295	Crystal Structure Of Chk1 Complexed With A Hymenald		4e-06
4fsu_A	279	Crystal Structure Of The Chk1 Length = 279		5e-06
4fsy_A	279	Crystal Structure Of The Chk1 Length = 279		5e-06
4fsn_A	278	Crystal Structure Of The Chk1 Length = 278		5e-06
2ivv_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		5e-06
4fsm_A	279	Crystal Structure Of The Chk1 Length = 279		5e-06
3ggf_A	301	Crystal Structure Of Human SerineTHREONINE-Protein		5e-06
2ivs_A	314	Crystal Structure Of Non-Phosphorylated Ret Tyrosin		5e-06
1yoj_A	283	Crystal Structure Of Src Kinase Domain Length = 283		6e-06
2x8e_A	276	Discovery Of A Novel Class Of Triazolones As Checkp		6e-06
3geq_A	286	Structural Basis For The Chemical Rescue Of Src Kin		6e-06
2ghg_A	269	H-Chk1 Complexed With A431994 Length = 269		6e-06
2ayp_A	269	Crystal Structure Of Chk1 With An Indol Inhibitor L		6e-06
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		6e-06
2ivt_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		6e-06
2e9v_A	268	Structure Of H-Chk1 Complexed With A859017 Length =		6e-06
2g01_A	370	Pyrazoloquinolones As Novel, Selective Jnk1 Inhibit		6e-06
3jvr_A	271	Characterization Of The Chk1 Allosteric Inhibitor B		6e-06
3nz0_A	302	Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 3		6e-06
1zys_A	273	Co-Crystal Structure Of Checkpoint Kinase Chk1 With		6e-06
3ekk_A	307	Insulin Receptor Kinase Complexed With An Inhibitor		6e-06
3ot3_A	273	X-Ray Crystal Structure Of Compound 22k Bound To Hu		6e-06
1p14_A	306	Crystal Structure Of A Catalytic-Loop Mutant Of The		7e-06
4e1z_A	291	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		7e-06
4ejn_A	446	Crystal Structure Of Autoinhibited Form Of Akt1 In		7e-06
3bea_A	333	Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A P		8e-06
2hk5_A	270	Hck Kinase In Complex With Lck Targetted Inhibitor		8e-06
4e20_A	290	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		8e-06
3o96_A	446	Crystal Structure Of Human Akt1 With An Allosteric		8e-06
1u59_A	287	Crystal Structure Of The Zap-70 Kinase Domain In Co		9e-06
2w96_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		9e-06
4f1o_A	287	Crystal Structure Of The L1180t Mutant Roco4 Kinase		9e-06
3tzm_A	309	Tgf-Beta Receptor Type 1 In Complex With Sb431542 L		9e-06
1ad5_A	438	Src Family Kinase Hck-Amp-Pnp Complex Length = 438		9e-06
3is5_A	285	Crystal Structure Of Cdpk Kinase Domain From Toxopl		9e-06
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		9e-06
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		1e-05
1rw8_A	301	Crystal Structure Of Tgf-Beta Receptor I Kinase Wit		1e-05
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		1e-05
1py5_A	326	Crystal Structure Of Tgf-Beta Receptor I Kinase Wit		1e-05
4gv1_A	340	Pkb Alpha In Complex With Azd5363 Length = 340		1e-05
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		1e-05
1vjy_A	303	Crystal Structure Of A Naphthyridine Inhibitor Of H		1e-05
2wot_A	306	Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl)		1e-05
3nyn_A	576	Crystal Structure Of G Protein-Coupled Receptor Kin		1e-05
2jam_A	304	Crystal Structure Of Human Calmodulin-Dependent Pro		1e-05
3ocb_A	341	Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor		1e-05
2acx_A	576	Crystal Structure Of G Protein Coupled Receptor Kin		1e-05
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		1e-05
2dq7_X	283	Crystal Structure Of Fyn Kinase Domain Complexed Wi		1e-05
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		1e-05
3vum_A	370	Crystal Structure Of A Cysteine-deficient Mutant M7		1e-05
3cqu_A	342	Crystal Structure Of Akt-1 Complexed With Substrate		1e-05
2dyl_A	318	Crystal Structure Of Human Mitogen-Activated Protei		1e-05
2y94_A	476	Structure Of An Active Form Of Mammalian Ampk Lengt		1e-05
1b6c_B	342	Crystal Structure Of The Cytoplasmic Domain Of The		1e-05
3vul_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		1e-05
4f1m_A	287	Crystal Structure Of The G1179s Roco4 Kinase Domain		1e-05
2yza_A	276	Crystal Structure Of Kinase Domain Of Human 5'-Amp-		1e-05
3ugc_A	295	Structural Basis Of Jak2 Inhibition By The Type Ii		1e-05
3p1a_A	311	Structure Of Human Membrane-Associated Tyrosine- An		1e-05
3uiu_A	306	Crystal Structure Of Apo-Pkr Kinase Domain Length =		1e-05
3orm_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain D76a		1e-05
1mru_A	311	Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycob		2e-05
3f69_A	311	Crystal Structure Of The Mycobacterium Tuberculosis		2e-05
3h9r_A	330	Crystal Structure Of The Kinase Domain Of Type I Ac		2e-05
1o6y_A	299	Catalytic Domain Of Pknb Kinase From Mycobacterium		2e-05
2qq7_A	286	Crystal Structure Of Drug Resistant Src Kinase Doma		2e-05
1mrv_A	339	Crystal Structure Of An Inactive Akt2 Kinase Domain		2e-05
3ori_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain L33d		2e-05
2hwo_A	286	Crystal Structure Of Src Kinase Domain In Complex W		2e-05
1gzk_A	315	Molecular Mechanism For The Regulation Of Protein K		2e-05
1gzn_A	335	Structure Of Pkb Kinase Domain Length = 335		2e-05
3iw4_A	360	Crystal Structure Of Pkc Alpha In Complex With Nvp-		2e-05
3elj_A	369	Jnk1 Complexed With A Bis-Anilino-Pyrrolopyrimidine		2e-05
1o6l_A	337	Crystal Structure Of An Activated Akt/protein Kinas		2e-05
1kob_A	387	Twitchin Kinase Fragment (Aplysia), Autoregulated P		2e-05
1o6k_A	336	Structure Of Activated Form Of Pkb Kinase Domain S4		2e-05
3f61_A	311	Crystal Structure Of M. Tuberculosis Pknb Leu33aspV		2e-05
1fot_A	318	Structure Of The Unliganded Camp-Dependent Protein		2e-05
4dym_A	301	Crystal Structure Of The Acvr1 Kinase Domain In Com		2e-05
3e87_A	335	Crystal Structures Of The Kinase Domain Of Akt2 In		2e-05
3mtf_A	301	Crystal Structure Of The Acvr1 Kinase In Complex Wi		2e-05
2r4b_A	321	Erbb4 Kinase Domain Complexed With A Thienopyrimidi		2e-05
3jy9_A	311	Janus Kinase 2 Inhibitors Length = 311		2e-05
2jdo_A	342	Structure Of Pkb-Beta (Akt2) Complexed With Isoquin		2e-05
3pze_A	358	Jnk1 In Complex With Inhibitor Length = 358		2e-05
3bbt_B	328	Crystal Structure Of The Erbb4 Kinase In Complex Wi		2e-05
3io7_A	313	2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel		2e-05
1rjb_A	344	Crystal Structure Of Flt3 Length = 344		2e-05
3a4o_X	286	Lyn Kinase Domain Length = 286		2e-05
2i0v_A	335	C-Fms Tyrosine Kinase In Complex With A Quinolone I		3e-05
3q32_A	301	Structure Of Janus Kinase 2 With A Pyrrolotriazine		3e-05
3lpb_A	295	Crystal Structure Of Jak2 Complexed With A Potent 2		3e-05
2jc6_A	334	Crystal Structure Of Human Calmodulin-Dependent Pro		3e-05
3hng_A	360	Crystal Structure Of Vegfr1 In Complex With N-(4-ch		3e-05
3e62_A	293	Fragment Based Discovery Of Jak-2 Inhibitors Length		3e-05
3tjc_A	298	Co-Crystal Structure Of Jak2 With Thienopyridine 8		3e-05
2b7a_A	293	The Structural Basis Of Janus Kinase 2 Inhibition B		3e-05
4hge_A	300	Jak2 Kinase (Jh1 Domain) In Complex With Compound 8		3e-05
3mfr_A	351	Cask-4m Cam Kinase Domain, Native Length = 351		3e-05
2ogv_A	317	Crystal Structure Of The Autoinhibited Human C-Fms		3e-05
4e4m_A	302	Jak2 Kinase (Jh1 Domain) In Complex With Compound 3		3e-05
3rvg_A	303	Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido		3e-05
4aqc_A	301	Triazolopyridine-Based Inhibitor Of Janus Kinase 2		3e-05
2w1i_A	326	Structure Determination Of Aurora Kinase In Complex		3e-05
4fr4_A	384	Crystal Structure Of Human SerineTHREONINE-Protein		3e-05
3lco_A	324	Inhibitor Bound To A Dfg-Out Structure Of The Kinas		3e-05
3lcd_A	329	Inhibitor Bound To A Dfg-In Structure Of The Kinase		3e-05
3t8o_A	543	Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolu		4e-05
3c4x_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		4e-05
4hvd_A	314	Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h		4e-05
3c4w_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		4e-05
3qc9_A	543	Crystal Structure Of Cross-Linked Bovine Grk1 T8cN4		4e-05
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		4e-05
3lxk_A	327	Structural And Thermodynamic Characterization Of Th		4e-05
3pjc_A	315	Crystal Structure Of Jak3 Complexed With A Potent A		5e-05
3sxr_A	268	Crystal Structure Of Bmx Non-Receptor Tyrosine Kina		5e-05
3v3v_A	379	Structural And Functional Analysis Of Quercetagetin		5e-05
2h6d_A	276	Protein Kinase Domain Of The Human 5'-Amp-Activated		5e-05
3pp0_A	338	Crystal Structure Of The Kinase Domain Of Human Her		5e-05
3g33_A	308	Crystal Structure Of Cdk4CYCLIN D3 Length = 308		5e-05
3txo_A	353	Pkc Eta Kinase In Complex With A Naphthyridine Leng		5e-05
4f4p_A	273	Syk In Complex With Ligand Lasw836 Length = 273		6e-05
4e5a_X	360	The W197a Mutant Of P38a Map Kinase Length = 360		6e-05
3vuh_A	370	Crystal Structure Of A Cysteine-deficient Mutant M3		6e-05
4dfl_A	274	Crystal Structure Of Spleen Tyrosine Kinase Complex		6e-05
3vui_A	370	Crystal Structure Of A Cysteine-deficient Mutant M2		6e-05
3vuk_A	370	Crystal Structure Of A Cysteine-deficient Mutant M5		6e-05
1yvj_A	290	Crystal Structure Of The Jak3 Kinase Domain In Comp		6e-05
2w99_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		6e-05
1xba_A	291	Crystal Structure Of Apo Syk Tyrosine Kinase Domain		7e-05
2qok_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		7e-05
3srv_A	277	Crystal Structure Of Spleen Tyrosine Kinase (Syk) I		7e-05
3srv_B	277	Crystal Structure Of Spleen Tyrosine Kinase (Syk) I		7e-05
2zv7_A	279	Lyn Tyrosine Kinase Domain, Apo Form Length = 279		7e-05
3fi2_A	353	Crystal Structure Of Jnk3 With Amino-Pyrazole Inhib		8e-05
3emg_A	291	Discovery And Sar Of Novel 4-Thiazolyl-2- Phenylami		8e-05
2pml_X	348	Crystal Structure Of Pfpk7 In Complex With An Atp A		8e-05
1ukh_A	369	Structural Basis For The Selective Inhibition Of Jn		8e-05
2ozo_A	613	Autoinhibited Intact Human Zap-70 Length = 613		8e-05
2zv2_A	298	Crystal Structure Of Human CalciumCALMODULIN-Depend		8e-05
2xrw_A	371	Linear Binding Motifs For Jnk And For Calcineurin A		9e-05
3vud_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		9e-05
3tub_A	293	Crystal Structure Of Syk Kinase Domain With 1-(5-(6		9e-05
4e6d_A	298	Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex W		9e-05
3vf8_A	299	Crystal Structure Of Spleen Tyrosine Kinase Syk Cat		9e-05
3fv8_A	355	Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774 Le		9e-05
3npc_A	364	Crystal Structure Of Jnk2 Complexed With Birb796 Le		9e-05
4bbe_A	298	Aminoalkylpyrimidine Inhibitor Complexes With Jak2		9e-05
3vug_A	370	Crystal Structure Of A Cysteine-deficient Mutant M2		9e-05
2cdz_A	303	Crystal Structure Of The Human P21-Activated Kinase		9e-05
3e7o_A	360	Crystal Structure Of Jnk2 Length = 360		9e-05
2q0n_A	301	Structure Of Human P21 Activating Kinase 4 (Pak4) I		9e-05
2bal_A	365	P38alpha Map Kinase Bound To Pyrazoloamine Length =		1e-04
3d83_A	360	Crystal Structure Of P38 Kinase In Complex With A B		1e-04
3e92_A	371	Crystal Structure Of P38 Kinase In Complex With A B		1e-04
4fie_A	423	Full-Length Human Pak4 Length = 423		1e-04
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		1e-04
2bva_A	292	Crystal Structure Of The Human P21-Activated Kinase		1e-04
3gc8_A	370	The Structure Of P38beta C162s In Complex With A Di		1e-04
4fif_A	346	Catalytic Domain Of Human Pak4 With Rpkplvdp Peptid		1e-04
3nnx_A	354	Crystal Structure Of Phosphorylated P38 Alpha In Co		1e-04
3kvx_A	364	Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562 Le		1e-04
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		1e-04
2x4z_A	296	Crystal Structure Of The Human P21-Activated Kinase		1e-04
2baq_A	365	P38alpha Bound To Ro3201195 Length = 365		1e-04
2w9f_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		1e-04
3fi3_A	364	Crystal Structure Of Jnk3 With Indazole Inhibitor,		1e-04
2r9s_A	356	C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Qu		1e-04
1ove_A	366	The Structure Of P38 Alpha In Complex With A Dihydr		1e-04
2y8o_A	362	Crystal Structure Of Human P38alpha Complexed With		1e-04
2qob_A	344	Human Epha3 Kinase Domain, Base Structure Length =		1e-04
3rzf_A	677	Crystal Structure Of Inhibitor Of Kappab Kinase Bet		1e-04
3qa8_A	676	Crystal Structure Of Inhibitor Of Kappa B Kinase Be		1e-04
2c30_A	321	Crystal Structure Of The Human P21-Activated Kinase		1e-04
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		1e-04
2qoc_A	344	Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp		1e-04
4fl3_A	635	Structural And Biophysical Characterization Of The		1e-04
3ttj_A	464	Crystal Structure Of Jnk3 Complexed With Cc-359, A		1e-04
4g31_A	299	Crystal Structure Of Gsk6414 Bound To Perk (R587-R1		1e-04
4fl2_A	636	Structural And Biophysical Characterization Of The		1e-04
2a19_B	284	Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Leng		1e-04
3igo_A	486	Crystal Structure Of Cryptosporidium Parvum Cdpk1,		1e-04
1pmn_A	364	Crystal Structure Of Jnk3 In Complex With An Imidaz		1e-04
3ll6_A	337	Crystal Structure Of The Human Cyclin G Associated		1e-04
3ptg_A	363	Design And Synthesis Of A Novel, Orally Efficacious		1e-04
3gc9_A	370	The Structure Of P38beta C119s, C162s In Complex Wi		1e-04
2qon_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		1e-04
1jnk_A	423	The C-Jun N-Terminal Kinase (Jnk3s) Complexed With		1e-04
2ok1_A	365	Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3		1e-04
3oxi_A	362	Design And Synthesis Of Disubstituted Thiophene And		1e-04
3py3_A	380	Crystal Structure Of Phosphorylated P38alpha Map Ki		1e-04
3odz_X	360	Crystal Structure Of P38alpha Y323r Active Mutant L		1e-04
3od6_X	360	Crystal Structure Of P38alpha Y323t Active Mutant L		1e-04
3gp0_A	348	Crystal Structure Of Human Mitogen Activated Protei		1e-04
2o0u_A	364	Crystal Structure Of Human Jnk3 Complexed With N-{3		1e-04
1oz1_A	372	P38 Mitogen-Activated Kinase In Complex With 4-Azai		1e-04
3kul_B	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		1e-04
3dae_A	283	Crystal Structure Of Phosphorylated Snf1 Kinase Dom		1e-04
2gfs_A	372	P38 Kinase Crystal Structure In Complex With Ro3201		1e-04
3fi4_A	372	P38 Kinase Crystal Structure In Complex With Ro4499		1e-04
3hyh_A	275	Crystal Structure Of The Protein Kinase Domain Of Y		1e-04
2uv2_A	287	Crystal Structure Of Human Ste20-Like Kinase Bound		1e-04
4h36_A	356	Crystal Structure Of Jnk3 In Complex With Atf2 Pept		1e-04
3ody_X	360	Crystal Structure Of P38alpha Y323q Active Mutant L		2e-04
2qo7_A	373	Human Epha3 Kinase And Juxtamembrane Region, Dephos		2e-04
2b1p_A	355	Inhibitor Complex Of Jnk3 Length = 355		2e-04
3rny_A	346	Crystal Structure Of Human Rsk1 C-Terminal Kinase D		2e-04
3oef_X	360	Crystal Structure Of Y323f Inactive Mutant Of P38al		2e-04
3k3j_A	362	P38alpha Bound To Novel Dfg-Out Compound Pf-0041612		2e-04
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-04
2npq_A	367	A Novel Lipid Binding Site In The P38 Alpha Map Kin		2e-04
2gsf_A	373	The Human Epha3 Receptor Tyrosine Kinase And Juxtam		2e-04
3oht_A	389	Crystal Structure Of Salmo Salar P38alpha Length =		2e-04
3d7z_A	360	Crystal Structure Of P38 Kinase In Complex With A B		2e-04
2baj_A	365	P38alpha Bound To Pyrazolourea Length = 365		2e-04
3mpt_A	371	Crystal Structure Of P38 Kinase In Complex With A P		2e-04
3kq7_A	380	Structure Of Human P38alpha With N-[4-Methyl-3-(6-{		2e-04
3hrb_A	359	P38 Kinase Crystal Structure In Complex With Small		2e-04
2qof_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f		2e-04
2qod_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y602f		2e-04
1di9_A	360	The Structure Of P38 Mitogen-Activated Protein Kina		2e-04
1lew_A	360	Crystal Structure Of Map Kinase P38 Complexed To Th		2e-04
3gcu_A	360	Human P38 Map Kinase In Complex With Rl48 Length =		2e-04
2i0e_A	353	Structure Of Catalytic Domain Of Human Protein Kina		2e-04
3zsg_A	362	X-Ray Structure Of P38alpha Bound To Tak-715 Length		2e-04
3s3i_A	349	P38 Kinase Crystal Structure In Complex With Small		2e-04
2lgc_A	359	Joint Nmr And X-Ray Refinement Reveals The Structur		2e-04
3k3i_A	350	P38alpha Bound To Novel Dgf-Out Compound Pf-0021595		2e-04
3fxx_A	371	Human Epha3 Kinase And Juxtamembrane Region Bound T		2e-04
2exc_X	356	Inhibitor Complex Of Jnk3 Length = 356		2e-04
1bl6_A	379	The Complex Structure Of The Map Kinase P38SB216995		2e-04
3hec_A	348	P38 In Complex With Imatinib Length = 348		2e-04
3dt1_A	383	P38 Complexed With A Quinazoline Inhibitor Length =		2e-04
3hvc_A	362	Crystal Structure Of Human P38alpha Map Kinase Leng		2e-04
2fh9_A	274	Structure And Dimerization Of The Kinase Domain Fro		2e-04
3p4k_A	370	The Third Conformation Of P38a Map Kinase Observed		2e-04
3nnu_A	354	Crystal Structure Of P38 Alpha In Complex With Dp13		2e-04
3mn3_A	271	An Inhibited Conformation For The Protein Kinase Do		2e-04
2wei_A	287	Crystal Structure Of The Kinase Domain Of Cryptospo		2e-04
3tg1_A	380	Crystal Structure Of P38alpha In Complex With A Map		2e-04
2xs0_A	386	Linear Binding Motifs For Jnk And For Calcineurin A		2e-04
2x4f_A	373	The Crystal Structure Of The Human Myosin Light Cha		2e-04
1m7q_A	366	Crystal Structure Of P38 Map Kinase In Complex With		2e-04
1bmk_A	379	The Complex Structure Of The Map Kinase P38SB218655		2e-04
1zzl_A	351	Crystal Structure Of P38 With Triazolopyridine Leng		2e-04
1ywr_A	360	Crystal Structure Analysis Of Inactive P38 Kinase D		2e-04
2ya9_A	361	Crystal Structure Of The Autoinhibited Form Of Mous		2e-04
2puu_A	348	Crystal Structure Of P38 Complex With 1-(5-Tert-But		2e-04
2qol_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596:y		2e-04
3dfa_A	286	Crystal Structure Of Kinase Domain Of Calcium-depen		2e-04
2gtm_A	348	Mutated Mouse P38 Map Kinase Domain In Complex With		2e-04
1yw2_A	360	Mutated Mus Musculus P38 Kinase (Mp38) Length = 360		2e-04
1z9x_A	321	Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal		2e-04
3kul_A	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		2e-04
2a2a_A	321	High-resolution Crystallographic Analysis Of The Au		2e-04
2a27_A	321	Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal		2e-04
4ewq_A	383	Human P38 Alpha Mapk In Complex With A Pyridazine B		2e-04
2oza_B	366	Structure Of P38alpha Complex Length = 366		2e-04
2ghl_A	348	Mutant Mus Musculus P38 Kinase Domain In Complex Wi		2e-04
3mtl_A	324	Crystal Structure Of The Pctaire1 Kinase In Complex		2e-04
1wmk_A	321	Human Death-Associated Kinase Drp-1, Mutant S308d D		2e-04
1ian_A	366	Human P38 Map Kinase Inhibitor Complex Length = 366		2e-04
2wnt_A	330	Crystal Structure Of The Human Ribosomal Protein S6		2e-04
2vwi_A	303	Structure Of The Osr1 Kinase, A Hypertension Drug T		2e-04
1zws_A	288	Crystal Structure Of The Catalytic Domain Of Human		2e-04
3dak_A	290	Crystal Structure Of Domain-Swapped Osr1 Kinase Dom		2e-04
3fpq_A	290	Crystal Structure Of The Kinase Domain Of Wnk1 Leng		3e-04
3cjf_A	309	Crystal Structure Of Vegfr2 In Complex With A 3,4,5		3e-04
3g0f_A	336	Kit Kinase Domain Mutant D816h In Complex With Suni		3e-04
2fsl_X	367	Mitogen Activated Protein Kinase P38alpha (D176a+f3		3e-04
2fso_X	367	Mitogen Activated Protein Kinase P38alpha (D176a) A		3e-04
1how_A	373	The X-Ray Crystal Structure Of Sky1p, An Sr Protein		3e-04
2r2p_A	295	Kinase Domain Of Human Ephrin Type-A Receptor 5 (Ep		3e-04
4hzs_A	341	Crystal Structure Of Ack1 Kinase Domain With C-term		3e-04
1q8y_A	373	The Structure Of The Yeast Sr Protein Kinase, Sky1p		3e-04
2fst_X	367	Mitogen Activated Protein Kinase P38alpha (d176a+f3		3e-04
1v0b_A	288	Crystal Structure Of The T198a Mutant Of Pfpk5 Leng		3e-04
1v0o_A	288	Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulpho		3e-04
1cm8_A	367	Phosphorylated Map Kinase P38-Gamma Length = 367		4e-04
2xuu_A	334	Crystal Structure Of A Dap-Kinase 1 Mutant Length =		4e-04
2y6m_A	291	Crystal Structure Of Epha4 Kinase Domain Length = 2		4e-04
4hzr_A	277	Crystal Structure Of Ack1 Kinase Domain Length = 27		4e-04
1pkg_A	329	Structure Of A C-kit Kinase Product Complex Length		4e-04
1ob3_A	288	Structure Of P. Falciparum Pfpk5 Length = 288		4e-04
3sa0_A	360	Complex Of Erk2 With Norathyriol Length = 360		4e-04
1luf_A	343	Crystal Structure Of The Musk Tyrosine Kinase: Insi		4e-04
3qd2_B	332	Crsytal Structure Of Mouse Perk Kinase Domain Lengt		4e-04
1yhv_A	297	Crystal Structure Of Pak1 Kinase Domain With Two Po		4e-04
3c7q_A	316	Structure Of Vegfr2 Kinase Domain In Complex With B		4e-04
2xyu_A	285	Crystal Structure Of Epha4 Kinase Domain In Complex		4e-04
3mh2_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		4e-04
2hel_A	306	Crystal Structure Of A Mutant Epha4 Kinase Domain (		4e-04
1t45_A	331	Structural Basis For The Autoinhibition And Sti-571		4e-04
2p2h_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		4e-04
2j51_A	325	Crystal Structure Of Human Ste20-Like Kinase Bound		4e-04
1u46_A	291	Crystal Structure Of The Unphosphorylated Kinase Do		4e-04
2p2i_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		4e-04
1t46_A	313	Structural Basis For The Autoinhibition And Sti-571		4e-04
4id7_A	273	Ack1 Kinase In Complex With The Inhibitor Cis-3-[8-		5e-04
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		5e-04
2iwi_A	312	Crystal Structure Of The Human Pim2 In Complex With		5e-04
3eqp_B	276	Crystal Structure Of Ack1 With Compound T95 Length		5e-04
3g0e_A	336	Kit Kinase Domain In Complex With Sunitinib Length		5e-04
3u6j_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		5e-04
3ewh_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		5e-04
3cjg_A	309	Crystal Structure Of Vegfr2 In Complex With A 3,4,5		5e-04
3vid_A	356	Crystal Structure Of Human Vegfr2 Kinase Domain Wit		6e-04
3fxz_A	297	Crystal Structure Of Pak1 Kinase Domain With Ruthen		6e-04
2jfm_A	325	Crystal Structure Of Human Ste20-Like Kinase (Unlig		6e-04
1f3m_C	297	Crystal Structure Of Human SerineTHREONINE KINASE P		6e-04
3mdy_A	337	Crystal Structure Of The Cytoplasmic Domain Of The		6e-04
3gcp_A	360	Human P38 Map Kinase In Complex With Sb203580 Lengt		6e-04
2rei_A	318	Kinase Domain Of Human Ephrin Type-a Receptor 7 (ep		6e-04
3vhe_A	359	Crystal Structure Of Human Vegfr2 Kinase Domain Wit		6e-04
4fv7_A	360	Crystal Structure Of The Erk2 Complexed With E94 Le		6e-04
1pme_A	380	Structure Of Penta Mutant Human Erk2 Map Kinase Com		6e-04
3q52_A	306	Structure Of Phosphorylated Pak1 Kinase Domain Leng		6e-04
2pk9_A	317	Structure Of The Pho85-pho80 Cdk-cyclin Complex Of		6e-04
3qyw_A	364	Crystal Structure Of Erk2 In Complex With An Inhibi		6e-04
2oh4_A	316	Crystal Structure Of Vegfr2 With A Benzimidazole-Ur		6e-04
1ywn_A	316	Vegfr2 In Complex With A Novel 4-amino-furo[2,3-d]p		6e-04
4gsb_A	364	Monoclinic Crystal Form Of The Apo-Erk2 Length = 36		6e-04
4fux_A	360	Crystal Structure Of The Erk2 Complexed With E75 Le		7e-04
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		7e-04
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		7e-04
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		7e-04
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		7e-04
4agc_A	353	Crystal Structure Of Vegfr2 (Juxtamembrane And Kina		7e-04
3pwy_A	311	Crystal Structure Of An Extender (Spd28345)-Modifie		7e-04
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		7e-04
4h3q_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		7e-04
2x0g_A	334	X-ray Structure Of A Dap-kinase Calmodulin Complex		7e-04
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		7e-04
2jfl_A	325	Crystal Structure Of Human Ste20-Like Kinase ( Diph		7e-04
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		7e-04
2xir_A	316	Crystal Structure Of The Vegfr2 Kinase Domain In Co		8e-04
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		8e-04
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		8e-04
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		8e-04
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		8e-04
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		8e-04
1y6a_A	366	Crystal Structure Of Vegfr2 In Complex With A 2-Ani		8e-04
3vnt_A	318	Crystal Structure Of The Kinase Domain Of Human Veg		8e-04
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		8e-04
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		8e-04
3vhk_A	368	Crystal Structure Of The Vegfr2 Kinase Domain In Co		8e-04
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		8e-04
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		8e-04
4aze_A	382	Human Dyrk1a In Complex With Leucettine L41 Length		8e-04
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		8e-04
1vr2_A	316	Human Vascular Endothelial Growth Factor Receptor 2		8e-04
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		8e-04
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		8e-04
2xzs_A	312	Death Associated Protein Kinase 1 Residues 1-312 Le		9e-04

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score =  115 bits (288), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/203 (36%), Positives = 110/203 (54%), Gaps = 25/203 (12%)
Query: 73  NGSLTDIIFCSAERNP--YWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           NGS+   +    E  P   W +R RIAL  A+G+ YLHD C+P I+H D+K  NIL+DE 
Sbjct: 111 NGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEE 170
Query: 131 WTAKILDFGLAKLPNEDFVIDKRDK----------GYMAPECYKRTPISVKADVYGYGIV 180
           + A + DFGLAKL      +D +D           G++APE       S K DV+GYG++
Sbjct: 171 FEAVVGDFGLAKL------MDYKDXHVXXAVRGXIGHIAPEYLSTGKSSEKTDVFGYGVM 224
Query: 181 LLETICCRKNMEIDA-SKPEEIILTNWVYKCFINRELNKLV----RGTKVDKKNLENLVK 235
           LLE I  ++  ++   +  ++++L +WV      ++L  LV    +G   D++ +E L++
Sbjct: 225 LLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEE-VEQLIQ 283
Query: 236 VGLWCVQDEPALRP-MKCAVMML 257
           V L C Q  P  RP M   V ML
Sbjct: 284 VALLCTQSSPMERPKMSEVVRML 306

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/203 (36%), Positives = 110/203 (54%), Gaps = 25/203 (12%)
Query: 73  NGSLTDIIFCSAERNP--YWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           NGS+   +    E  P   W +R RIAL  A+G+ YLHD C+P I+H D+K  NIL+DE 
Sbjct: 119 NGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEE 178
Query: 131 WTAKILDFGLAKLPNEDFVIDKRDK----------GYMAPECYKRTPISVKADVYGYGIV 180
           + A + DFGLAKL      +D +D           G++APE       S K DV+GYG++
Sbjct: 179 FEAVVGDFGLAKL------MDYKDXHVXXAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVM 232
Query: 181 LLETICCRKNMEIDA-SKPEEIILTNWVYKCFINRELNKLV----RGTKVDKKNLENLVK 235
           LLE I  ++  ++   +  ++++L +WV      ++L  LV    +G   D++ +E L++
Sbjct: 233 LLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEE-VEQLIQ 291
Query: 236 VGLWCVQDEPALRP-MKCAVMML 257
           V L C Q  P  RP M   V ML
Sbjct: 292 VALLCTQSSPMERPKMSEVVRML 314

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 95/184 (51%), Gaps = 13/184 (7%)
Query: 67  IERPVRNGSLTDIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQN 124
           I + + NG+L   ++ S     +  W QR+ I +  A+G+ YLH      I+H D+K  N
Sbjct: 113 IYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRA---IIHRDVKSIN 169
Query: 125 ILMDEFWTAKILDFGLAKLPNED-----FVIDKRDKGYMAPECYKRTPISVKADVYGYGI 179
           IL+DE +  KI DFG++K   E        + K   GY+ PE + +  ++ K+DVY +G+
Sbjct: 170 ILLDENFVPKITDFGISKKGTELGQTHLXXVVKGTLGYIDPEYFIKGRLTEKSDVYSFGV 229
Query: 180 VLLETICCRKNMEIDASKPEEII-LTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGL 238
           VL E +C R    I  S P E++ L  W  +   N +L ++V     DK   E+L K G 
Sbjct: 230 VLFEVLCARS--AIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGD 287
Query: 239 WCVQ 242
             V+
Sbjct: 288 TAVK 291

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 95/184 (51%), Gaps = 13/184 (7%)
Query: 67  IERPVRNGSLTDIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQN 124
           I + + NG+L   ++ S     +  W QR+ I +  A+G+ YLH      I+H D+K  N
Sbjct: 113 IYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRA---IIHRDVKSIN 169
Query: 125 ILMDEFWTAKILDFGLAKLPNED-----FVIDKRDKGYMAPECYKRTPISVKADVYGYGI 179
           IL+DE +  KI DFG++K   E        + K   GY+ PE + +  ++ K+DVY +G+
Sbjct: 170 ILLDENFVPKITDFGISKKGTELDQTHLXXVVKGTLGYIDPEYFIKGRLTEKSDVYSFGV 229
Query: 180 VLLETICCRKNMEIDASKPEEII-LTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGL 238
           VL E +C R    I  S P E++ L  W  +   N +L ++V     DK   E+L K G 
Sbjct: 230 VLFEVLCARS--AIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGD 287
Query: 239 WCVQ 242
             V+
Sbjct: 288 TAVK 291

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/192 (34%), Positives = 97/192 (50%), Gaps = 28/192 (14%)
Query: 73  NGSLTDIIFCSAERNPY-WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 131
           NGSL D + C     P  W+ R +IA   A GI +LH   E   +H DIK  NIL+DE +
Sbjct: 114 NGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLH---ENHHIHRDIKSANILLDEAF 170
Query: 132 TAKILDFGLAKLPNEDF---VIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETI 185
           TAKI DFGLA+  +E F   V+  R  G   YMAPE   R  I+ K+D+Y +G+VLLE I
Sbjct: 171 TAKISDFGLAR-ASEKFAQTVMXSRIVGTTAYMAPEAL-RGEITPKSDIYSFGVVLLEII 228
Query: 186 CCRKNMEIDASKPEEIILTNWVYKC--------FINRELNKLVRGTKVDKKNLENLVKVG 237
                  +D  +  +++L               +I++++N        D  ++E +  V 
Sbjct: 229 TGLP--AVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMN------DADSTSVEAMYSVA 280
Query: 238 LWCVQDEPALRP 249
             C+ ++   RP
Sbjct: 281 SQCLHEKKNKRP 292

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/192 (34%), Positives = 97/192 (50%), Gaps = 28/192 (14%)
Query: 73  NGSLTDIIFCSAERNPY-WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 131
           NGSL D + C     P  W+ R +IA   A GI +LH   E   +H DIK  NIL+DE +
Sbjct: 114 NGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLH---ENHHIHRDIKSANILLDEAF 170
Query: 132 TAKILDFGLAKLPNEDF---VIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETI 185
           TAKI DFGLA+  +E F   V+  R  G   YMAPE   R  I+ K+D+Y +G+VLLE I
Sbjct: 171 TAKISDFGLAR-ASEKFAQTVMXXRIVGTTAYMAPEAL-RGEITPKSDIYSFGVVLLEII 228
Query: 186 CCRKNMEIDASKPEEIILTNWVYKC--------FINRELNKLVRGTKVDKKNLENLVKVG 237
                  +D  +  +++L               +I++++N        D  ++E +  V 
Sbjct: 229 TGLP--AVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMN------DADSTSVEAMYSVA 280
Query: 238 LWCVQDEPALRP 249
             C+ ++   RP
Sbjct: 281 SQCLHEKKNKRP 292

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/192 (34%), Positives = 97/192 (50%), Gaps = 28/192 (14%)
Query: 73  NGSLTDIIFCSAERNPY-WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 131
           NGSL D + C     P  W+ R +IA   A GI +LH   E   +H DIK  NIL+DE +
Sbjct: 108 NGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLH---ENHHIHRDIKSANILLDEAF 164
Query: 132 TAKILDFGLAKLPNEDF---VIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETI 185
           TAKI DFGLA+  +E F   V+  R  G   YMAPE   R  I+ K+D+Y +G+VLLE I
Sbjct: 165 TAKISDFGLAR-ASEKFAQXVMXXRIVGTTAYMAPEAL-RGEITPKSDIYSFGVVLLEII 222
Query: 186 CCRKNMEIDASKPEEIILTNWVYKC--------FINRELNKLVRGTKVDKKNLENLVKVG 237
                  +D  +  +++L               +I++++N        D  ++E +  V 
Sbjct: 223 TGLP--AVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMN------DADSTSVEAMYSVA 274
Query: 238 LWCVQDEPALRP 249
             C+ ++   RP
Sbjct: 275 SQCLHEKKNKRP 286

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 72/120 (60%), Gaps = 5/120 (4%)
Query: 74  GSLTDIIFCSAERNPY-WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT 132
           GSL  ++  S  R      +R+ +A DVAKG+ YLH+   PPI+H D+K  N+L+D+ +T
Sbjct: 119 GSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR-NPPIVHRDLKSPNLLVDKKYT 177
Query: 133 AKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETICCRK 189
            K+ DFGL++L    F+  K   G   +MAPE  +  P + K+DVY +G++L E    ++
Sbjct: 178 VKVCDFGLSRLKASXFLXSKXAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQ 237

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 80.9 bits (198), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 72/120 (60%), Gaps = 5/120 (4%)
Query: 74  GSLTDIIFCSAERNPY-WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT 132
           GSL  ++  S  R      +R+ +A DVAKG+ YLH+   PPI+H ++K  N+L+D+ +T
Sbjct: 119 GSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR-NPPIVHRNLKSPNLLVDKKYT 177
Query: 133 AKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETICCRK 189
            K+ DFGL++L    F+  K   G   +MAPE  +  P + K+DVY +G++L E    ++
Sbjct: 178 VKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQ 237

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/121 (45%), Positives = 69/121 (57%), Gaps = 12/121 (9%)
Query: 73  NGSLTDIIFCSAERNPY-WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 131
           NGSL D + C     P  W+ R +IA   A GI +LH   E   +H DIK  NIL+DE +
Sbjct: 105 NGSLLDRLSCLDGTPPLSWHXRCKIAQGAANGINFLH---ENHHIHRDIKSANILLDEAF 161
Query: 132 TAKILDFGLAKLPNEDF---VIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETI 185
           TAKI DFGLA+  +E F   V   R  G   Y APE   R  I+ K+D+Y +G+VLLE I
Sbjct: 162 TAKISDFGLAR-ASEKFAQXVXXSRIVGTTAYXAPEAL-RGEITPKSDIYSFGVVLLEII 219
Query: 186 C 186
Sbjct: 220 T 220

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 4/125 (3%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIA--LDVAKGILYLHDECEPPILHCDIKPQNILMD 128
              GSL +++   AE  PY+     ++  L  ++G+ YLH      ++H D+KP N+L+ 
Sbjct: 82  AEGGSLYNVLH-GAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLV 140
Query: 129 EFWTA-KILDFGLAKLPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICC 187
              T  KI DFG A         +K    +MAPE ++ +  S K DV+ +GI+L E I  
Sbjct: 141 AGGTVLKICDFGTACDIQTHMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITR 200
Query: 188 RKNME 192
           RK  +
Sbjct: 201 RKPFD 205

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 4/125 (3%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIA--LDVAKGILYLHDECEPPILHCDIKPQNILMD 128
              GSL +++   AE  PY+     ++  L  ++G+ YLH      ++H D+KP N+L+ 
Sbjct: 81  AEGGSLYNVLH-GAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLV 139
Query: 129 EFWTA-KILDFGLAKLPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICC 187
              T  KI DFG A         +K    +MAPE ++ +  S K DV+ +GI+L E I  
Sbjct: 140 AGGTVLKICDFGTACDIQTHMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITR 199
Query: 188 RKNME 192
           RK  +
Sbjct: 200 RKPFD 204

>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 11/103 (10%)
Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
           Q + IA   A+G+ YLH +    I+H D+K  NI + E  T KI DFGLA + +      
Sbjct: 133 QLIDIARQTAQGMDYLHAKN---IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQ 189
Query: 152 KRDKG-----YMAPECYK---RTPISVKADVYGYGIVLLETIC 186
           + ++      +MAPE  +     P S ++DVY YGIVL E + 
Sbjct: 190 QVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMT 232

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLP-----NEDF 148
           + IA   A+G+ YLH +    I+H D+K  NI + E  T KI DFGLA +      +  F
Sbjct: 135 IDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQF 191
Query: 149 VIDKRDKGYMAPECYK---RTPISVKADVYGYGIVLLETICCR 188
                   +MAPE  +   + P S ++DVY +GIVL E +  +
Sbjct: 192 EQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ 234

>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLP-----NEDF 148
           + IA   A+G+ YLH +    I+H D+K  NI + E  T KI DFGLA +      +  F
Sbjct: 134 IDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQF 190
Query: 149 VIDKRDKGYMAPECYK---RTPISVKADVYGYGIVLLETICCR 188
                   +MAPE  +   + P S ++DVY +GIVL E +  +
Sbjct: 191 EQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ 233

>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 61/132 (46%), Gaps = 21/132 (15%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           ++ G+L  II     + P W+QRV  A D+A G+ YLH      I+H D+   N L+ E 
Sbjct: 89  IKGGTLRGIIKSMDSQYP-WSQRVSFAKDIASGMAYLHSMN---IIHRDLNSHNCLVREN 144
Query: 131 WTAKILDFGLAKL-------PNEDFVIDKRDKG----------YMAPECYKRTPISVKAD 173
               + DFGLA+L       P     + K D+           +MAPE         K D
Sbjct: 145 KNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVD 204
Query: 174 VYGYGIVLLETI 185
           V+ +GIVL E I
Sbjct: 205 VFSFGIVLCEII 216

>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLP-----NEDF 148
           + IA   A+G+ YLH +    I+H D+K  NI + E  T KI DFGLA +      +  F
Sbjct: 109 IDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQF 165
Query: 149 VIDKRDKGYMAPECYK---RTPISVKADVYGYGIVLLETICCR 188
                   +MAPE  +   + P S ++DVY +GIVL E +  +
Sbjct: 166 EQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ 208

>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLP-----NEDF 148
           + IA   A+G+ YLH +    I+H D+K  NI + E  T KI DFGLA +      +  F
Sbjct: 112 IDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQF 168
Query: 149 VIDKRDKGYMAPECYK---RTPISVKADVYGYGIVLLETICCR 188
                   +MAPE  +   + P S ++DVY +GIVL E +  +
Sbjct: 169 EQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ 211

>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLP-----NEDF 148
           + IA   A+G+ YLH +    I+H D+K  NI + E  T KI DFGLA +      +  F
Sbjct: 112 IDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQF 168
Query: 149 VIDKRDKGYMAPECYK---RTPISVKADVYGYGIVLLETICCR 188
                   +MAPE  +   + P S ++DVY +GIVL E +  +
Sbjct: 169 EQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ 211

>pdb|3Q4T|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a) Kinase Domain In Complex With Dorsomorphin Length = 322

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 81/183 (44%), Gaps = 27/183 (14%)
Query: 20  PWISRVSWTADIEVLSV-AMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTD 78
           P   + SW  + EV S+  M+     +  G       V   L  ++   E+    GSL+D
Sbjct: 56  PIQDKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEK----GSLSD 111
Query: 79  IIFCSAERNPYWNQRVRIALDVAKGILYLH-------DECEPPILHCDIKPQNILMDEFW 131
            +  +      WN+   IA  +A+G+ YLH       D  +P I H DIK +N+L+    
Sbjct: 112 FLKANV---VSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNL 168
Query: 132 TAKILDFGLA-KLPNEDFVIDKRD----KGYMAPEC------YKRTPISVKADVYGYGIV 180
           TA I DFGLA K        D       + YMAPE       ++R    ++ D+Y  G+V
Sbjct: 169 TACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAF-LRIDMYAMGLV 227
Query: 181 LLE 183
           L E
Sbjct: 228 LWE 230

>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLP-----NEDF 148
           + IA   A+G+ YLH +    I+H D+K  NI + E  T KI DFGLA +      +  F
Sbjct: 107 IDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQF 163
Query: 149 VIDKRDKGYMAPECYK---RTPISVKADVYGYGIVLLETICCR 188
                   +MAPE  +   + P S ++DVY +GIVL E +  +
Sbjct: 164 EQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ 206

>pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLP-----NEDF 148
           + IA   A+G+ YLH +    I+H D+K  NI + E  T KI DFGLA +      +  F
Sbjct: 107 IDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQF 163
Query: 149 VIDKRDKGYMAPECYK---RTPISVKADVYGYGIVLLETICCR 188
                   +MAPE  +   + P S ++DVY +GIVL E +  +
Sbjct: 164 EQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ 206

>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-----LPNEDF 148
           + IA   A+G+ YLH +    I+H D+K  NI + E  T KI DFGLA        +  F
Sbjct: 135 IDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQF 191
Query: 149 VIDKRDKGYMAPECYK---RTPISVKADVYGYGIVLLETICCR 188
                   +MAPE  +   + P S ++DVY +GIVL E +  +
Sbjct: 192 EQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ 234

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLP-----NEDF 148
           + IA   A+G+ YLH +    I+H D+K  NI + E  T KI DFGLA +      +  F
Sbjct: 111 IDIARQTARGMDYLHAKS---IIHRDLKSNNIFLHEDNTVKIGDFGLATVKSRWSGSHQF 167
Query: 149 VIDKRDKGYMAPECYK---RTPISVKADVYGYGIVLLETICCR 188
                   +MAPE  +     P S ++DVY +GIVL E +  +
Sbjct: 168 EQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQ 210

>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-----LPNEDF 148
           + IA   A+G+ YLH +    I+H D+K  NI + E  T KI DFGLA        +  F
Sbjct: 127 IDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQF 183
Query: 149 VIDKRDKGYMAPECYK---RTPISVKADVYGYGIVLLETICCR 188
                   +MAPE  +   + P S ++DVY +GIVL E +  +
Sbjct: 184 EQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ 226

>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-----LPNEDF 148
           + IA   A+G+ YLH +    I+H D+K  NI + E  T KI DFGLA        +  F
Sbjct: 107 IDIARQTAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQF 163
Query: 149 VIDKRDKGYMAPECYK---RTPISVKADVYGYGIVLLETICCR 188
                   +MAPE  +   + P S ++DVY +GIVL E +  +
Sbjct: 164 EQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ 206

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 52/103 (50%), Gaps = 11/103 (10%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-----LPNEDF 148
           + IA   A+G+ YLH +    I+H D+K  NI + E  T KI DFGLA        +  F
Sbjct: 123 IDIARQTARGMDYLHAKS---IIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQF 179
Query: 149 VIDKRDKGYMAPECYK---RTPISVKADVYGYGIVLLETICCR 188
                   +MAPE  +     P S ++DVY +GIVL E +  +
Sbjct: 180 EQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQ 222

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 52/103 (50%), Gaps = 11/103 (10%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-----LPNEDF 148
           + IA   A+G+ YLH +    I+H D+K  NI + E  T KI DFGLA        +  F
Sbjct: 123 IDIARQTARGMDYLHAKS---IIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQF 179
Query: 149 VIDKRDKGYMAPECYK---RTPISVKADVYGYGIVLLETICCR 188
                   +MAPE  +     P S ++DVY +GIVL E +  +
Sbjct: 180 EQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQ 222

>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g Hyperactivating Mutant In Apo Form. Length = 303

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 28/134 (20%)
Query: 73  NGSLTDIIFC---SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE 129
           NG+L D+I     + +R+ YW    R+   + + + Y+H +    I+H D+KP NI +DE
Sbjct: 99  NGTLYDLIHSENLNQQRDEYW----RLFRQILEALSYIHSQG---IIHRDLKPMNIFIDE 151
Query: 130 FWTAKILDFGLAKLPNEDFVIDKRDKG-----------------YMAPECYKRT-PISVK 171
               KI DFGLAK  +    I K D                   Y+A E    T   + K
Sbjct: 152 SRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEK 211
Query: 172 ADVYGYGIVLLETI 185
            D+Y  GI+  E I
Sbjct: 212 IDMYSLGIIFFEMI 225

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 12/124 (9%)
Query: 72  RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 131
           R G L  ++  S +R P  +  V  A+ +A+G+ YLHDE   PI+H D+K  NIL+ +  
Sbjct: 89  RGGPLNRVL--SGKRIPP-DILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKV 145
Query: 132 --------TAKILDFGLAKLPNEDFVIDKRDK-GYMAPECYKRTPISVKADVYGYGIVLL 182
                     KI DFGLA+  +    +       +MAPE  + +  S  +DV+ YG++L 
Sbjct: 146 ENGDLSNKILKITDFGLAREWHRTTKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLW 205
Query: 183 ETIC 186
           E + 
Sbjct: 206 ELLT 209

>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 9/136 (6%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           + NGSL D +   +      N+ + +A  +A+G+ ++ +      +H D++  NIL+ + 
Sbjct: 89  MENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERN---YIHRDLRAANILVSDT 145
Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
            + KI DFGLA+L  ED     R+       + APE       ++K+DV+ +GI+L E +
Sbjct: 146 LSCKIADFGLARL-IEDAEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIV 204
Query: 186 CCRKNMEIDASKPEEI 201
              +      + PE I
Sbjct: 205 THGRIPYPGMTNPEVI 220

>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase Length = 278

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 21/170 (12%)
Query: 83  SAERNPYWNQRVR---------IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           + E N Y   RV+             +  G+LYLH      ILH D+   N+L+      
Sbjct: 95  NGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHSHG---ILHRDLTLSNLLLTRNMNI 151
Query: 134 KILDFGLA---KLPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKN 190
           KI DFGLA   K+P+E          Y++PE   R+   +++DV+  G +    +  R  
Sbjct: 152 KIADFGLATQLKMPHEKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPP 211
Query: 191 MEIDASKP--EEIILTNWVYKCFINRE----LNKLVRGTKVDKKNLENLV 234
            + D  K    +++L ++    F++ E    +++L+R    D+ +L +++
Sbjct: 212 FDTDTVKNTLNKVVLADYEMPSFLSIEAKDLIHQLLRRNPADRLSLSSVL 261

>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 7/135 (5%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           + NGSL D +   +      N+ + +A  +A+G+ ++    E   +H D++  NIL+ + 
Sbjct: 84  MENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDT 140
Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKGY----MAPECYKRTPISVKADVYGYGIVLLETIC 186
            + KI DFGLA+L  ++    +    +     APE       ++K+DV+ +GI+L E + 
Sbjct: 141 LSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 200
Query: 187 CRKNMEIDASKPEEI 201
             +      + PE I
Sbjct: 201 HGRIPYPGMTNPEVI 215

>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp Length = 298

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 73  NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT 132
           +G L   I  S +RNP     +   L VA+G+ YL    E   +H D+  +N ++DE +T
Sbjct: 107 HGDLLQFI-RSPQRNPTVKDLISFGLQVARGMEYL---AEQKFVHRDLAARNCMLDESFT 162
Query: 133 AKILDFGLAK--LPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
            K+ DFGLA+  L  E + + +         + A E  +    + K+DV+ +G++L E +
Sbjct: 163 VKVADFGLARDILDREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELL 222
Query: 186 C 186
Sbjct: 223 T 223

>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1 Bound To Lck Length = 272

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 7/135 (5%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           + NGSL D +   +      N+ + +A  +A+G+ ++    E   +H D++  NIL+ + 
Sbjct: 90  MENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDT 146
Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKGY----MAPECYKRTPISVKADVYGYGIVLLETIC 186
            + KI DFGLA+L  ++    +    +     APE       ++K+DV+ +GI+L E + 
Sbjct: 147 LSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 206
Query: 187 CRKNMEIDASKPEEI 201
             +      + PE I
Sbjct: 207 HGRIPYPGMTNPEVI 221

>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck), Activated Form (Auto-Phosphorylated On Tyr394) Length = 271

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 7/135 (5%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           + NGSL D +   +      N+ + +A  +A+G+ ++    E   +H D++  NIL+ + 
Sbjct: 89  MENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDT 145
Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKGY----MAPECYKRTPISVKADVYGYGIVLLETIC 186
            + KI DFGLA+L  ++    +    +     APE       ++K+DV+ +GI+L E + 
Sbjct: 146 LSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 205
Query: 187 CRKNMEIDASKPEEI 201
             +      + PE I
Sbjct: 206 HGRIPYPGMTNPEVI 220

>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 7/135 (5%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           + NGSL D +   +      N+ + +A  +A+G+ ++    E   +H D++  NIL+ + 
Sbjct: 91  MENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDT 147
Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKGY----MAPECYKRTPISVKADVYGYGIVLLETIC 186
            + KI DFGLA+L  ++    +    +     APE       ++K+DV+ +GI+L E + 
Sbjct: 148 LSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 207
Query: 187 CRKNMEIDASKPEEI 201
             +      + PE I
Sbjct: 208 HGRIPYPGMTNPEVI 222

>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 7/135 (5%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           + NGSL D +   +      N+ + +A  +A+G+ ++    E   +H D++  NIL+ + 
Sbjct: 89  MENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDT 145
Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKGY----MAPECYKRTPISVKADVYGYGIVLLETIC 186
            + KI DFGLA+L  ++    +    +     APE       ++K+DV+ +GI+L E + 
Sbjct: 146 LSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 205
Query: 187 CRKNMEIDASKPEEI 201
             +      + PE I
Sbjct: 206 HGRIPYPGMTNPEVI 220

>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 9/136 (6%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           + NGSL D +   +      N+ + +A  +A+G+ ++ +      +H D++  NIL+ + 
Sbjct: 98  MENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERN---YIHRDLRAANILVSDT 154
Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
            + KI DFGLA+L  ED     R+       + APE       ++K+DV+ +GI+L E +
Sbjct: 155 LSCKIADFGLARL-IEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIV 213
Query: 186 CCRKNMEIDASKPEEI 201
              +      + PE I
Sbjct: 214 THGRIPYPGMTNPEVI 229

>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 68/136 (50%), Gaps = 9/136 (6%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           + NGSL D +   +      N+ + +A  +A+G+ ++    E   +H D++  NIL+ + 
Sbjct: 95  MENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDT 151
Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
            + KI DFGLA+L  ED     R+       + APE       ++K+DV+ +GI+L E +
Sbjct: 152 LSCKIADFGLARL-IEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIV 210
Query: 186 CCRKNMEIDASKPEEI 201
              +      + PE I
Sbjct: 211 THGRIPYPGMTNPEVI 226

>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 68/136 (50%), Gaps = 9/136 (6%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           + NGSL D +   +      N+ + +A  +A+G+ ++    E   +H D++  NIL+ + 
Sbjct: 94  MENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDT 150
Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
            + KI DFGLA+L  ED     R+       + APE       ++K+DV+ +GI+L E +
Sbjct: 151 LSCKIADFGLARL-IEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIV 209
Query: 186 CCRKNMEIDASKPEEI 201
              +      + PE I
Sbjct: 210 THGRIPYPGMTNPEVI 225

>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 9/136 (6%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           + NGSL D +   +      N+ + +A  +A+G+ ++ +      +H D++  NIL+ + 
Sbjct: 95  MENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERN---YIHRDLRAANILVSDT 151
Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
            + KI DFGLA+L  ED     R+       + APE       ++K+DV+ +GI+L E +
Sbjct: 152 LSCKIADFGLARL-IEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIV 210
Query: 186 CCRKNMEIDASKPEEI 201
              +      + PE I
Sbjct: 211 THGRIPYPGMTNPEVI 226

>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 9/136 (6%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           + NGSL D +   +      N+ + +A  +A+G+ ++ +      +H D++  NIL+ + 
Sbjct: 97  MENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERN---YIHRDLRAANILVSDT 153
Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
            + KI DFGLA+L  ED     R+       + APE       ++K+DV+ +GI+L E +
Sbjct: 154 LSCKIADFGLARL-IEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIV 212
Query: 186 CCRKNMEIDASKPEEI 201
              +      + PE I
Sbjct: 213 THGRIPYPGMTNPEVI 228

>pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 9/136 (6%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           + NGSL D +   +      N+ + +A  +A+G+ ++ +      +H D++  NIL+ + 
Sbjct: 99  MENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERN---YIHRDLRAANILVSDT 155
Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
            + KI DFGLA+L  ED     R+       + APE       ++K+DV+ +GI+L E +
Sbjct: 156 LSCKIADFGLARL-IEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIV 214
Query: 186 CCRKNMEIDASKPEEI 201
              +      + PE I
Sbjct: 215 THGRIPYPGMTNPEVI 230

>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 9/136 (6%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           + NGSL D +   +      N+ + +A  +A+G+ ++ +      +H D++  NIL+ + 
Sbjct: 89  MENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERN---YIHRDLRAANILVSDT 145
Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
            + KI DFGLA+L  ED     R+       + APE       ++K+DV+ +GI+L E +
Sbjct: 146 LSCKIADFGLARL-IEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIV 204
Query: 186 CCRKNMEIDASKPEEI 201
              +      + PE I
Sbjct: 205 THGRIPYPGMTNPEVI 220

>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294

Iteration: 1
 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRD----K 155
           +  GI + HD     I+H DIKPQNIL+D   T KI DFG+AK  +E  +          
Sbjct: 120 ILDGIKHAHD---MRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQTNHVLGTV 176
Query: 156 GYMAPECYKRTPISVKADVYGYGIVLLETIC 186
            Y +PE  K        D+Y  GIVL E + 
Sbjct: 177 QYFSPEQAKGEATDECTDIYSIGIVLYEMLV 207

>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound Length = 279

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 7/118 (5%)
Query: 73  NGSLTDIIFCSAERNPYWNQ----RVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD 128
            G L  +I    +   Y ++    RV   L +A    +   +    +LH D+KP N+ +D
Sbjct: 91  GGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLD 150
Query: 129 EFWTAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLE 183
                K+ DFGLA++ N D    K   G   YM+PE   R   + K+D++  G +L E
Sbjct: 151 GKQNVKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYE 208

>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand Length = 279

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 7/118 (5%)
Query: 73  NGSLTDIIFCSAERNPYWNQ----RVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD 128
            G L  +I    +   Y ++    RV   L +A    +   +    +LH D+KP N+ +D
Sbjct: 91  GGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLD 150
Query: 129 EFWTAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLE 183
                K+ DFGLA++ N D    K   G   YM+PE   R   + K+D++  G +L E
Sbjct: 151 GKQNVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYE 208

>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based Allosteric Inhibitor Xl518 (Gdc-0973), Or Related Analogs. Length = 301

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 59/99 (59%), Gaps = 11/99 (11%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA-----KLPNEDFV 149
           ++++ V KG+ YL ++ +  I+H D+KP NIL++     K+ DFG++     ++ NE FV
Sbjct: 111 KVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDEMANE-FV 167
Query: 150 IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCR 188
                + YM+PE  + T  SV++D++  G+ L+E    R
Sbjct: 168 ---GTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGR 203

>pdb|3FME|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein Kinase Kinase 6 (Mek6) Activated Mutant (S207d, T211d) Length = 290

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 8/100 (8%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFV--IDK 152
           +IA+ + K + +LH +    ++H D+KP N+L++     K+ DFG++    +D    ID 
Sbjct: 113 KIAVSIVKALEHLHSKLS--VIHRDVKPSNVLINALGQVKMCDFGISGYLVDDVAKDIDA 170
Query: 153 RDKGYMAPE----CYKRTPISVKADVYGYGIVLLETICCR 188
             K YMAPE       +   SVK+D++  GI ++E    R
Sbjct: 171 GCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILR 210

>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662 Length = 279

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 7/118 (5%)
Query: 73  NGSLTDIIFCSAERNPYWNQ----RVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD 128
            G L  +I    +   Y ++    RV   L +A    +   +    +LH D+KP N+ +D
Sbjct: 91  GGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLD 150
Query: 129 EFWTAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLE 183
                K+ DFGLA++ N D    K   G   YM+PE   R   + K+D++  G +L E
Sbjct: 151 GKQNVKLGDFGLARILNHDEDFAKEFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYE 208

>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine Length = 267

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 67/135 (49%), Gaps = 7/135 (5%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           + NGSL D +   +      N+ + +A  +A+G+ ++    E   +H +++  NIL+ + 
Sbjct: 85  MENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRNLRAANILVSDT 141
Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKGY----MAPECYKRTPISVKADVYGYGIVLLETIC 186
            + KI DFGLA+L  ++    +    +     APE       ++K+DV+ +GI+L E + 
Sbjct: 142 LSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 201
Query: 187 CRKNMEIDASKPEEI 201
             +      + PE I
Sbjct: 202 HGRIPYPGMTNPEVI 216

>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human Rsk-1 Bound To Amp-Pcp Length = 321

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 16/96 (16%)
Query: 99  DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG-- 156
           ++A G+ +LH      I++ D+KP+NIL+DE    K+ DFGL+K       ID   K   
Sbjct: 138 ELALGLDHLHSLG---IIYRDLKPENILLDEEGHIKLTDFGLSKE-----AIDHEKKAYS 189
Query: 157 ------YMAPECYKRTPISVKADVYGYGIVLLETIC 186
                 YMAPE   R   S  AD + YG+++ E + 
Sbjct: 190 FCGTVEYMAPEVVNRQGHSHSADWWSYGVLMFEMLT 225

>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp Length = 354

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 14/122 (11%)
Query: 73  NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT 132
           +G   D +   A+R P      ++++ V +G+ YL ++ +  I+H D+KP NIL++    
Sbjct: 97  DGGSLDQVLKEAKRIP-EEILGKVSIAVLRGLAYLREKHQ--IMHRDVKPSNILVNSRGE 153
Query: 133 AKILDFGLAKLPNEDFVIDKR------DKGYMAPECYKRTPISVKADVYGYGIVLLETIC 186
            K+ DFG++       +ID         + YMAPE  + T  SV++D++  G+ L+E   
Sbjct: 154 IKLCDFGVSGQ-----LIDSMANSFVGTRSYMAPERLQGTHYSVQSDIWSMGLSLVELAV 208
Query: 187 CR 188
            R
Sbjct: 209 GR 210

>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild- Type In Apo Form. Length = 303

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 28/134 (20%)
Query: 73  NGSLTDIIFC---SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE 129
           N +L D+I     + +R+ YW    R+   + + + Y+H +    I+H D+KP NI +DE
Sbjct: 99  NRTLYDLIHSENLNQQRDEYW----RLFRQILEALSYIHSQG---IIHRDLKPMNIFIDE 151
Query: 130 FWTAKILDFGLAKLPNEDFVIDKRDKG-----------------YMAPECYKRT-PISVK 171
               KI DFGLAK  +    I K D                   Y+A E    T   + K
Sbjct: 152 SRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEK 211
Query: 172 ADVYGYGIVLLETI 185
            D+Y  GI+  E I
Sbjct: 212 IDMYSLGIIFFEMI 225

>pdb|2QLU|A Chain A, Crystal Structure Of Activin Receptor Type Ii Kinase Domain From Human Length = 314

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 23/131 (17%)
Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDEC--------EPPILHCDIKPQNI 125
           GSLTD +  +      WN+   +A  +++G+ YLH++         +P I H D K +N+
Sbjct: 98  GSLTDYLKGNI---ITWNELCHVAETMSRGLSYLHEDVPWCRGEGHKPSIAHRDFKSKNV 154
Query: 126 LMDEFWTAKILDFGLA-----KLPNEDFVIDKRDKGYMAPEC------YKRTPISVKADV 174
           L+    TA + DFGLA       P  D       + YMAPE       ++R    ++ D+
Sbjct: 155 LLKSDLTAVLADFGLAVRFEPGKPPGDTHGQVGTRRYMAPEVLEGAINFQRDAF-LRIDM 213
Query: 175 YGYGIVLLETI 185
           Y  G+VL E +
Sbjct: 214 YAMGLVLWELV 224

>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With Ucb1353770 And Amppnp Length = 304

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 57/99 (57%), Gaps = 11/99 (11%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA-----KLPNEDFV 149
           ++++ V KG+ YL ++ +  I+H D+KP NIL++     K+ DFG++      + N  FV
Sbjct: 127 KVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMAN-SFV 183
Query: 150 IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCR 188
                + YM+PE  + T  SV++D++  G+ L+E    R
Sbjct: 184 ---GTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGR 219

>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor Length = 292

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 11/122 (9%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +++G L + I  +   NP     +   L VAKG+ YL        +H D+  +N ++DE 
Sbjct: 106 MKHGDLRNFI-RNETHNPTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEK 161
Query: 131 WTAKILDFGLAK-LPNEDFVIDKRDKG------YMAPECYKRTPISVKADVYGYGIVLLE 183
           +T K+ DFGLA+ + ++++       G      +MA E  +    + K+DV+ +G++L E
Sbjct: 162 FTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWE 221
Query: 184 TI 185
            +
Sbjct: 222 LM 223

>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880 (Gsk1 Length = 302

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 11/122 (9%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +++G L + I  +   NP     +   L VAKG+ YL        +H D+  +N ++DE 
Sbjct: 112 MKHGDLRNFI-RNETHNPTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEK 167
Query: 131 WTAKILDFGLAK-LPNEDFVIDKRDKG------YMAPECYKRTPISVKADVYGYGIVLLE 183
           +T K+ DFGLA+ + ++++       G      +MA E  +    + K+DV+ +G++L E
Sbjct: 168 FTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWE 227
Query: 184 TI 185
            +
Sbjct: 228 LM 229

>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer Length = 395

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 13/100 (13%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR- 153
           ++++ V KG+ YL ++ +  I+H D+KP NIL++     K+ DFG++       +ID   
Sbjct: 170 KVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQ-----LIDSMA 222
Query: 154 -----DKGYMAPECYKRTPISVKADVYGYGIVLLETICCR 188
                 + YM+PE  + T  SV++D++  G+ L+E    R
Sbjct: 223 NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGR 262

>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine Inhibitor 13 Length = 309

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 11/120 (9%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +++G L + I  +   NP     +   L VAKG+ YL        +H D+  +N ++DE 
Sbjct: 113 MKHGDLRNFI-RNETHNPTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEK 168
Query: 131 WTAKILDFGLAK-LPNEDFVIDKRDKG------YMAPECYKRTPISVKADVYGYGIVLLE 183
           +T K+ DFGLA+ + ++++       G      +MA E  +    + K+DV+ +G++L E
Sbjct: 169 FTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWE 228

>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor. Length = 310

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 11/120 (9%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +++G L + I  +   NP     +   L VAKG+ YL        +H D+  +N ++DE 
Sbjct: 114 MKHGDLRNFI-RNETHNPTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEK 169
Query: 131 WTAKILDFGLAK-LPNEDFVIDKRDKG------YMAPECYKRTPISVKADVYGYGIVLLE 183
           +T K+ DFGLA+ + ++++       G      +MA E  +    + K+DV+ +G++L E
Sbjct: 170 FTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWE 229

>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The Dually-Phosphorylated, Activated State Length = 308

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 11/120 (9%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +++G L + I  +   NP     +   L VAKG+ YL        +H D+  +N ++DE 
Sbjct: 114 MKHGDLRNFI-RNETHNPTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEK 169
Query: 131 WTAKILDFGLAK-LPNEDFVIDKRDKG------YMAPECYKRTPISVKADVYGYGIVLLE 183
           +T K+ DFGLA+ + ++++       G      +MA E  +    + K+DV+ +G++L E
Sbjct: 170 FTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWE 229

>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor Length = 319

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 11/120 (9%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +++G L + I  +   NP     +   L VAKG+ YL        +H D+  +N ++DE 
Sbjct: 133 MKHGDLRNFI-RNETHNPTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEK 188
Query: 131 WTAKILDFGLAK-LPNEDFVIDKRDKG------YMAPECYKRTPISVKADVYGYGIVLLE 183
           +T K+ DFGLA+ + ++++       G      +MA E  +    + K+DV+ +G++L E
Sbjct: 189 FTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWE 248

>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase Length = 318

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 11/122 (9%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +++G L + I  +   NP     +   L VAKG+ YL        +H D+  +N ++DE 
Sbjct: 132 MKHGDLRNFI-RNETHNPTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEK 187
Query: 131 WTAKILDFGLAK-LPNEDFVIDKRDKG------YMAPECYKRTPISVKADVYGYGIVLLE 183
           +T K+ DFGLA+ + ++++       G      +MA E  +    + K+DV+ +G++L E
Sbjct: 188 FTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWE 247
Query: 184 TI 185
            +
Sbjct: 248 LM 249

>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor Length = 298

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 11/122 (9%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +++G L + I  +   NP     +   L VAKG+ YL        +H D+  +N ++DE 
Sbjct: 109 MKHGDLRNFI-RNETHNPTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEK 164
Query: 131 WTAKILDFGLAK-LPNEDFVIDKRDKG------YMAPECYKRTPISVKADVYGYGIVLLE 183
           +T K+ DFGLA+ + ++++       G      +MA E  +    + K+DV+ +G++L E
Sbjct: 165 FTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWE 224
Query: 184 TI 185
            +
Sbjct: 225 LM 226

>pdb|3VN9|A Chain A, Rifined Crystal Structure Of Non-Phosphorylated Map2k6 In A Putative Auto-Inhibition State Length = 340

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF--VIDK 152
           +IA+ + K + +LH +    ++H D+KP N+L++     K+ DFG++    +     ID 
Sbjct: 157 KIAVSIVKALEHLHSKLS--VIHRDVKPSNVLINALGQVKMCDFGISGYLVDSVAKTIDA 214
Query: 153 RDKGYMAPE----CYKRTPISVKADVYGYGIVLLETICCR 188
             K YMAPE       +   SVK+D++  GI ++E    R
Sbjct: 215 GCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILR 254

>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain Of C-Met Length = 306

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 11/122 (9%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +++G L + I  +   NP     +   L VAKG+ YL        +H D+  +N ++DE 
Sbjct: 111 MKHGDLRNFI-RNETHNPTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEK 166
Query: 131 WTAKILDFGLAK-LPNEDFVIDKRDKG------YMAPECYKRTPISVKADVYGYGIVLLE 183
           +T K+ DFGLA+ + ++++       G      +MA E  +    + K+DV+ +G++L E
Sbjct: 167 FTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWE 226
Query: 184 TI 185
            +
Sbjct: 227 LM 228

>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of Triazine Derivatives As Potent, Selective Tie-2 Inhibitors Length = 317

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 11/100 (11%)
Query: 91  NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVI 150
            Q +  A DVA+G+ YL    +   +H D+  +NIL+ E + AKI DFGL++   E +V 
Sbjct: 132 QQLLHFAADVARGMDYL---SQKQFIHRDLAARNILVGENYVAKIADFGLSR-GQEVYV- 186
Query: 151 DKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
            K+  G     +MA E    +  +  +DV+ YG++L E +
Sbjct: 187 -KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIV 225

>pdb|1FVR|A Chain A, Tie2 Kinase Domain Length = 327

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 11/100 (11%)
Query: 91  NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVI 150
            Q +  A DVA+G+ YL    +   +H D+  +NIL+ E + AKI DFGL++   E +V 
Sbjct: 142 QQLLHFAADVARGMDYL---SQKQFIHRDLAARNILVGENYVAKIADFGLSR-GQEVYV- 196
Query: 151 DKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
            K+  G     +MA E    +  +  +DV+ YG++L E +
Sbjct: 197 -KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIV 235

>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Ternary Complex With Compound 1, Atp-Gs And Mg2p Length = 360

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 57/99 (57%), Gaps = 11/99 (11%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA-----KLPNEDFV 149
           ++++ V KG+ YL ++ +  I+H D+KP NIL++     K+ DFG++      + N  FV
Sbjct: 135 KVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMAN-SFV 191
Query: 150 IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCR 188
                + YM+PE  + T  SV++D++  G+ L+E    R
Sbjct: 192 ---GTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGR 227

>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor Kinase Length = 299

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 80/170 (47%), Gaps = 27/170 (15%)
Query: 88  PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED 147
           P  ++ +++A ++A G+ YL+       +H D+  +N ++ E +T KI DFG+ +   E 
Sbjct: 120 PSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIXET 176
Query: 148 FVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEII 202
               K  KG     +M+PE  K    +  +DV+ +G+VL E           A +P    
Sbjct: 177 DXXRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATL-------AEQP---- 225
Query: 203 LTNWVYKCFINRELNKLV-RGTKVDKKN--LENLVKVGLWCVQDEPALRP 249
                Y+   N ++ + V  G  +DK +   + L+++   C Q  P +RP
Sbjct: 226 -----YQGLSNEQVLRFVMEGGLLDKPDNCPDMLLELMRMCWQYNPKMRP 270

>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1 Length = 317

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 11/120 (9%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +++G L + I  +   NP     +   L VAKG+ +L        +H D+  +N ++DE 
Sbjct: 115 MKHGDLRNFI-RNETHNPTVKDLIGFGLQVAKGMKFL---ASKKFVHRDLAARNCMLDEK 170
Query: 131 WTAKILDFGLAK-LPNEDFVIDKRDKG------YMAPECYKRTPISVKADVYGYGIVLLE 183
           +T K+ DFGLA+ + +++F       G      +MA E  +    + K+DV+ +G++L E
Sbjct: 171 FTVKVADFGLARDMLDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWE 230

>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In Complex With Ch4987655 And Mgamp-Pnp Length = 307

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 13/100 (13%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR- 153
           ++++ V KG+ YL ++ +  I+H D+KP NIL++     K+ DFG++       +ID   
Sbjct: 108 KVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQ-----LIDSMA 160
Query: 154 -----DKGYMAPECYKRTPISVKADVYGYGIVLLETICCR 188
                 + YM+PE  + T  SV++D++  G+ L+E    R
Sbjct: 161 NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGR 200

>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1 Length = 317

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 11/120 (9%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +++G L + I  +   NP     +   L VAKG+ +L        +H D+  +N ++DE 
Sbjct: 115 MKHGDLRNFI-RNETHNPTVKDLIGFGLQVAKGMKFL---ASKKFVHRDLAARNCMLDEK 170
Query: 131 WTAKILDFGLAK-LPNEDFVIDKRDKG------YMAPECYKRTPISVKADVYGYGIVLLE 183
           +T K+ DFGLA+ + +++F       G      +MA E  +    + K+DV+ +G++L E
Sbjct: 171 FTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWE 230

>pdb|3LM0|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE 17B (STK17B) Length = 327

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 91  NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW---TAKILDFGLAKLPNED 147
           N  +R+   + +G+ YLH   +  I+H D+KPQNIL+   +     KI+DFG+++     
Sbjct: 131 NDVIRLIKQILEGVYYLH---QNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHA 187
Query: 148 FVIDK--RDKGYMAPECYKRTPISVKADVYGYGIV 180
             + +      Y+APE     PI+   D++  GI+
Sbjct: 188 CELREIMGTPEYLAPEILNYDPITTATDMWNIGII 222

>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 341

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 13/100 (13%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR- 153
           ++++ V KG+ YL ++ +  I+H D+KP NIL++     K+ DFG++       +ID   
Sbjct: 108 KVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQ-----LIDSMA 160
Query: 154 -----DKGYMAPECYKRTPISVKADVYGYGIVLLETICCR 188
                 + YM+PE  + T  SV++D++  G+ L+E    R
Sbjct: 161 NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGR 200

>pdb|2Z8C|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin-2- Yl]amino}phenyl)acetic Acid Length = 303

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 27/170 (15%)
Query: 88  PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED 147
           P   + +++A ++A G+ YL+ +     +H D+  +N ++   +T KI DFG+ +   E 
Sbjct: 124 PTLQEMIQMAAEIADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKIGDFGMTRDIXET 180
Query: 148 FVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEII 202
               K  KG     +MAPE  K    +  +D++ +G+VL E           A +P    
Sbjct: 181 DXXRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSL-------AEQP---- 229
Query: 203 LTNWVYKCFINRELNKLVR-GTKVDKKN--LENLVKVGLWCVQDEPALRP 249
                Y+   N ++ K V  G  +D+ +   E +  +   C Q  P +RP
Sbjct: 230 -----YQGLSNEQVLKFVMDGGYLDQPDNCPERVTDLMRMCWQFNPKMRP 274

>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor And Isoquinolinedione Inhibitor Length = 308

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 27/170 (15%)
Query: 88  PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED 147
           P  ++ +++A ++A G+ YL+       +H D+  +N ++ E +T KI DFG+ +   E 
Sbjct: 129 PSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIXET 185
Query: 148 FVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEII 202
               K  KG     +M+PE  K    +  +DV+ +G+VL E           A +P    
Sbjct: 186 DXXRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATL-------AEQP---- 234
Query: 203 LTNWVYKCFINRELNKLV-RGTKVDKKN--LENLVKVGLWCVQDEPALRP 249
                Y+   N ++ + V  G  +DK +   + L ++   C Q  P +RP
Sbjct: 235 -----YQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRP 279

>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 333

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 13/100 (13%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR- 153
           ++++ V KG+ YL ++ +  I+H D+KP NIL++     K+ DFG++       +ID   
Sbjct: 108 KVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQ-----LIDSMA 160
Query: 154 -----DKGYMAPECYKRTPISVKADVYGYGIVLLETICCR 188
                 + YM+PE  + T  SV++D++  G+ L+E    R
Sbjct: 161 NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGR 200

>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) In Complex With Staurosporine Length = 304

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 91  NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVI 150
            Q   I  ++ KG+ YLH E +   +H DIK  N+L+ E    K+ DFG+A    +  + 
Sbjct: 104 TQIATILREILKGLDYLHSEKK---IHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIK 160
Query: 151 DKRDKG---YMAPECYKRTPISVKADVYGYGIVLLE 183
                G   +MAPE  K++    KAD++  GI  +E
Sbjct: 161 RNXFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIE 196

>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With 6-Benzyloxyquinoline Inhibitor Length = 319

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 11/120 (9%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +++G L + I  +   NP     +   L VAKG+ +L        +H D+  +N ++DE 
Sbjct: 119 MKHGDLRNFI-RNETHNPTVKDLIGFGLQVAKGMKFL---ASKKFVHRDLAARNCMLDEK 174
Query: 131 WTAKILDFGLAK-LPNEDFVIDKRDKG------YMAPECYKRTPISVKADVYGYGIVLLE 183
           +T K+ DFGLA+ + +++F       G      +MA E  +    + K+DV+ +G++L E
Sbjct: 175 FTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWE 234

>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Aminopyridine Based Inhibitor Length = 314

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 11/120 (9%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +++G L + I  +   NP     +   L VAKG+ +L        +H D+  +N ++DE 
Sbjct: 114 MKHGDLRNFI-RNETHNPTVKDLIGFGLQVAKGMKFL---ASKKFVHRDLAARNCMLDEK 169
Query: 131 WTAKILDFGLAK-LPNEDFVIDKRDKG------YMAPECYKRTPISVKADVYGYGIVLLE 183
           +T K+ DFGLA+ + +++F       G      +MA E  +    + K+DV+ +G++L E
Sbjct: 170 FTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWE 229

>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) Length = 304

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 91  NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVI 150
            Q   I  ++ KG+ YLH E +   +H DIK  N+L+ E    K+ DFG+A    +  + 
Sbjct: 104 TQIATILREILKGLDYLHSEKK---IHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIK 160
Query: 151 DKRDKG---YMAPECYKRTPISVKADVYGYGIVLLE 183
                G   +MAPE  K++    KAD++  GI  +E
Sbjct: 161 RNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIE 196

>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With The Microbial Alkaloid K-252a Length = 312

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 11/120 (9%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +++G L + I  +   NP     +   L VAKG+ +L        +H D+  +N ++DE 
Sbjct: 112 MKHGDLRNFI-RNETHNPTVKDLIGFGLQVAKGMKFL---ASKKFVHRDLAARNCMLDEK 167
Query: 131 WTAKILDFGLAK-LPNEDFVIDKRDKG------YMAPECYKRTPISVKADVYGYGIVLLE 183
           +T K+ DFGLA+ + +++F       G      +MA E  +    + K+DV+ +G++L E
Sbjct: 168 FTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWE 227

>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp Length = 328

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 57/99 (57%), Gaps = 11/99 (11%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA-----KLPNEDFV 149
           ++++ V KG+ YL ++ +  I+H D+KP NIL++     K+ DFG++      + N  FV
Sbjct: 108 KVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMAN-SFV 164
Query: 150 IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCR 188
                + YM+PE  + T  SV++D++  G+ L+E    R
Sbjct: 165 ---GTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGR 200

>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound Length = 322

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 57/99 (57%), Gaps = 11/99 (11%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA-----KLPNEDFV 149
           ++++ V KG+ YL ++ +  I+H D+KP NIL++     K+ DFG++      + N  FV
Sbjct: 108 KVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMAN-SFV 164
Query: 150 IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCR 188
                + YM+PE  + T  SV++D++  G+ L+E    R
Sbjct: 165 ---GTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGR 200

>pdb|1I44|A Chain A, Crystallographic Studies Of An Activation Loop Mutant Of The Insulin Receptor Tyrosine Kinase Length = 306

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 27/170 (15%)
Query: 88  PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED 147
           P   + +++A ++A G+ YL+ +     +H D+  +N ++   +T KI DFG+ +   E 
Sbjct: 127 PTLQEMIQMAAEIADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYET 183
Query: 148 FVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEII 202
               K  KG     +MAPE  K    +  +D++ +G+VL E           A +P    
Sbjct: 184 AYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSL-------AEQP---- 232
Query: 203 LTNWVYKCFINRELNKLVR-GTKVDKKN--LENLVKVGLWCVQDEPALRP 249
                Y+   N ++ K V  G  +D+ +   E +  +   C Q  P +RP
Sbjct: 233 -----YQGLSNEQVLKFVMDGGYLDQPDNCPERVTDLMRMCWQFNPKMRP 277

>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta Length = 294

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 91  NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVI 150
            Q   I  ++ KG+ YLH E +   +H DIK  N+L+ E    K+ DFG+A    +  + 
Sbjct: 124 TQIATILREILKGLDYLHSEKK---IHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIK 180
Query: 151 DKRDKG---YMAPECYKRTPISVKADVYGYGIVLLE 183
                G   +MAPE  K++    KAD++  GI  +E
Sbjct: 181 RNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIE 216

>pdb|3A7F|A Chain A, Human Mst3 Kinase Length = 303

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 91  NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVI 150
            Q   I  ++ KG+ YLH E +   +H DIK  N+L+ E    K+ DFG+A    +  + 
Sbjct: 119 TQIATILREILKGLDYLHSEKK---IHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIK 175
Query: 151 DKRDKG---YMAPECYKRTPISVKADVYGYGIVLLE 183
                G   +MAPE  K++    KAD++  GI  +E
Sbjct: 176 RNXFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIE 211

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 30/185 (16%)
Query: 74  GSLTDIIFCSAERNPYWN--QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 131
           GSL D  F   E   Y    Q V +A  +A G+ Y+        +H D++  NIL+ E  
Sbjct: 263 GSLLD--FLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENL 317
Query: 132 TAKILDFGLAKLPNEDFVIDKRDKGY----MAPECYKRTPISVKADVYGYGIVLLETICC 187
             K+ DFGLA+L  ++    ++   +     APE       ++K+DV+ +GI+L E    
Sbjct: 318 VCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE---- 373
Query: 188 RKNMEIDASKPEEIILTNWVYKCFINRE-LNKLVRGTKV--DKKNLENLVKVGLWCVQDE 244
              +      P         Y   +NRE L+++ RG ++    +  E+L  +   C + E
Sbjct: 374 ---LTTKGRVP---------YPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKE 421
Query: 245 PALRP 249
           P  RP
Sbjct: 422 PEERP 426

>pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex With Peptide Substrate And Atp Analog Length = 306

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 27/170 (15%)
Query: 88  PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED 147
           P   + +++A ++A G+ YL+ +     +H D+  +N ++   +T KI DFG+ +   E 
Sbjct: 127 PTLQEMIQMAAEIADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKIGDFGMTRDIXET 183
Query: 148 FVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEII 202
               K  KG     +MAPE  K    +  +D++ +G+VL E           A +P    
Sbjct: 184 DXXRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSL-------AEQP---- 232
Query: 203 LTNWVYKCFINRELNKLVR-GTKVDKKN--LENLVKVGLWCVQDEPALRP 249
                Y+   N ++ K V  G  +D+ +   E +  +   C Q  P +RP
Sbjct: 233 -----YQGLSNEQVLKFVMDGGYLDQPDNCPERVTDLMRMCWQFNPKMRP 277

>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972 Length = 314

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 11/120 (9%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +++G L + I  +   NP     +   L VAKG+ +L        +H D+  +N ++DE 
Sbjct: 114 MKHGDLRNFI-RNETHNPTVKDLIGFGLQVAKGMKFL---ASKKFVHRDLAARNCMLDEK 169
Query: 131 WTAKILDFGLAK-LPNEDFVIDKRDKG------YMAPECYKRTPISVKADVYGYGIVLLE 183
           +T K+ DFGLA+ + +++F       G      +MA E  +    + K+DV+ +G++L E
Sbjct: 170 FTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWE 229

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 30/185 (16%)
Query: 74  GSLTDIIFCSAERNPYWN--QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 131
           GSL D  F   E   Y    Q V +A  +A G+ Y+        +H D++  NIL+ E  
Sbjct: 263 GSLLD--FLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENL 317
Query: 132 TAKILDFGLAKLPNEDFVIDKRDKGY----MAPECYKRTPISVKADVYGYGIVLLETICC 187
             K+ DFGLA+L  ++    ++   +     APE       ++K+DV+ +GI+L E    
Sbjct: 318 VCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE---- 373
Query: 188 RKNMEIDASKPEEIILTNWVYKCFINRE-LNKLVRGTKV--DKKNLENLVKVGLWCVQDE 244
              +      P         Y   +NRE L+++ RG ++    +  E+L  +   C + E
Sbjct: 374 ---LTTKGRVP---------YPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKE 421
Query: 245 PALRP 249
           P  RP
Sbjct: 422 PEERP 426

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 30/185 (16%)
Query: 74  GSLTDIIFCSAERNPYWN--QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 131
           GSL D  F   E   Y    Q V +A  +A G+ Y+        +H D++  NIL+ E  
Sbjct: 346 GSLLD--FLKGETGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGENL 400
Query: 132 TAKILDFGLAKLPNEDFVIDKRDKGY----MAPECYKRTPISVKADVYGYGIVLLETICC 187
             K+ DFGLA+L  ++    ++   +     APE       ++K+DV+ +GI+L E    
Sbjct: 401 VCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE---- 456
Query: 188 RKNMEIDASKPEEIILTNWVYKCFINRE-LNKLVRGTKV--DKKNLENLVKVGLWCVQDE 244
              +      P         Y   +NRE L+++ RG ++    +  E+L  +   C + E
Sbjct: 457 ---LTTKGRVP---------YPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKE 504
Query: 245 PALRP 249
           P  RP
Sbjct: 505 PEERP 509

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 30/185 (16%)
Query: 74  GSLTDIIFCSAERNPYWN--QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 131
           GSL D  F   E   Y    Q V +A  +A G+ Y+        +H D++  NIL+ E  
Sbjct: 263 GSLLD--FLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENL 317
Query: 132 TAKILDFGLAKLPNEDFVIDKRDKGY----MAPECYKRTPISVKADVYGYGIVLLETICC 187
             K+ DFGLA+L  ++    ++   +     APE       ++K+DV+ +GI+L E    
Sbjct: 318 VCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE---- 373
Query: 188 RKNMEIDASKPEEIILTNWVYKCFINRE-LNKLVRGTKV--DKKNLENLVKVGLWCVQDE 244
              +      P         Y   +NRE L+++ RG ++    +  E+L  +   C + E
Sbjct: 374 ---LTTKGRVP---------YPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKE 421
Query: 245 PALRP 249
           P  RP
Sbjct: 422 PEERP 426

>pdb|1RQQ|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In Complex With The Sh2 Domain Of Aps Length = 306

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 27/170 (15%)
Query: 88  PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED 147
           P   + +++A ++A G+ YL+ +     +H D+  +N ++   +T KI DFG+ +   E 
Sbjct: 127 PTLQEMIQMAAEIADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKIGDFGMTRDIXET 183
Query: 148 FVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEII 202
               K  KG     +MAPE  K    +  +D++ +G+VL E           A +P    
Sbjct: 184 DXXRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSL-------AEQP---- 232
Query: 203 LTNWVYKCFINRELNKLVR-GTKVDKKN--LENLVKVGLWCVQDEPALRP 249
                Y+   N ++ K V  G  +D+ +   E +  +   C Q  P +RP
Sbjct: 233 -----YQGLSNEQVLKFVMDGGYLDQPDNCPERVTDLMRMCWQFNPNMRP 277

>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Pyrrolotriazine Based Inhibitor Length = 373

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 11/120 (9%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +++G L + I  +   NP     +   L VAKG+ +L        +H D+  +N ++DE 
Sbjct: 173 MKHGDLRNFI-RNETHNPTVKDLIGFGLQVAKGMKFL---ASKKFVHRDLAARNCMLDEK 228
Query: 131 WTAKILDFGLAK-LPNEDFVIDKRDKG------YMAPECYKRTPISVKADVYGYGIVLLE 183
           +T K+ DFGLA+ + +++F       G      +MA E  +    + K+DV+ +G++L E
Sbjct: 229 FTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWE 288

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           GSL D +          +  ++ +LDV + + YL        +H D+  +N+L+ E   A
Sbjct: 91  GSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNN---FVHRDLAARNVLVSEDNVA 147
Query: 134 KILDFGLAKLPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLE 183
           K+ DFGL K  +      K    + APE  +    S K+DV+ +GI+L E
Sbjct: 148 KVSDFGLTKEASSTQDTGKLPVKWTAPEALREAAFSTKSDVWSFGILLWE 197

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 30/188 (15%)
Query: 71  VRNGSLTDIIFCSAERNPYWN--QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD 128
           +  GSL D  F   E   Y    Q V +A  +A G+ Y+        +H D++  NIL+ 
Sbjct: 84  MSKGSLLD--FLKGETGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVG 138
Query: 129 EFWTAKILDFGLAKLPNEDFVIDKRDKGY----MAPECYKRTPISVKADVYGYGIVLLET 184
           E    K+ DFGLA+L  ++    ++   +     APE       ++K+DV+ +GI+L E 
Sbjct: 139 ENLVCKVADFGLARLIEDNEXTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE- 197
Query: 185 ICCRKNMEIDASKPEEIILTNWVYKCFINRE-LNKLVRGTKV--DKKNLENLVKVGLWCV 241
                 +      P         Y   +NRE L+++ RG ++    +  E+L  +   C 
Sbjct: 198 ------LTTKGRVP---------YPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCW 242
Query: 242 QDEPALRP 249
           + EP  RP
Sbjct: 243 RKEPEERP 250

>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex With An Hydantoin Inhibitor Length = 305

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 27/170 (15%)
Query: 88  PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED 147
           P  ++ +++A ++A G+ YL+       +H D+  +N ++ E +T KI DFG+ +   E 
Sbjct: 126 PSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYET 182
Query: 148 FVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEII 202
               K  KG     +M+PE  K    +  +DV+ +G+VL E           A +P    
Sbjct: 183 DYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATL-------AEQP---- 231
Query: 203 LTNWVYKCFINRELNKLV-RGTKVDKKN--LENLVKVGLWCVQDEPALRP 249
                Y+   N ++ + V  G  +DK +   + L ++   C Q  P +RP
Sbjct: 232 -----YQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRP 276

>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With Pyrimidine 8 Length = 301

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 27/170 (15%)
Query: 88  PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED 147
           P  ++ +++A ++A G+ YL+       +H D+  +N ++ E +T KI DFG+ +   E 
Sbjct: 122 PSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYET 178
Query: 148 FVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEII 202
               K  KG     +M+PE  K    +  +DV+ +G+VL E           A +P    
Sbjct: 179 DYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATL-------AEQP---- 227
Query: 203 LTNWVYKCFINRELNKLV-RGTKVDKKN--LENLVKVGLWCVQDEPALRP 249
                Y+   N ++ + V  G  +DK +   + L ++   C Q  P +RP
Sbjct: 228 -----YQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRP 272

>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In Complex With An Mk-2461 Analog With Specificity For The Activated Receptor Length = 307

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 11/120 (9%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +++G L + I  +   NP     +   L VAKG+ YL        +H D+  +N ++DE 
Sbjct: 113 MKHGDLRNFI-RNETHNPTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEK 168
Query: 131 WTAKILDFGLAK--LPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLE 183
           +T K+ DFGLA+     E   +  +        +MA E  +    + K+DV+ +G++L E
Sbjct: 169 FTVKVADFGLARDMYDKEXXSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWE 228

>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain Length = 308

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 27/170 (15%)
Query: 88  PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED 147
           P  ++ +++A ++A G+ YL+       +H D+  +N ++ E +T KI DFG+ +   E 
Sbjct: 129 PSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYET 185
Query: 148 FVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEII 202
               K  KG     +M+PE  K    +  +DV+ +G+VL E           A +P    
Sbjct: 186 DYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATL-------AEQP---- 234
Query: 203 LTNWVYKCFINRELNKLV-RGTKVDKKN--LENLVKVGLWCVQDEPALRP 249
                Y+   N ++ + V  G  +DK +   + L ++   C Q  P +RP
Sbjct: 235 -----YQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRP 279

>pdb|1IRK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Human Insulin Receptor Length = 306

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 27/170 (15%)
Query: 88  PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED 147
           P   + +++A ++A G+ YL+ +     +H D+  +N ++   +T KI DFG+ +   E 
Sbjct: 127 PTLQEMIQMAAEIADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYET 183
Query: 148 FVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEII 202
               K  KG     +MAPE  K    +  +D++ +G+VL E           A +P    
Sbjct: 184 DYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSL-------AEQP---- 232
Query: 203 LTNWVYKCFINRELNKLVR-GTKVDKKN--LENLVKVGLWCVQDEPALRP 249
                Y+   N ++ K V  G  +D+ +   E +  +   C Q  P +RP
Sbjct: 233 -----YQGLSNEQVLKFVMDGGYLDQPDNCPERVTDLMRMCWQFNPKMRP 277

>pdb|3LW0|A Chain A, Igf-1rk In Complex With Ligand Msc1609119a-1 Length = 304

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 27/170 (15%)
Query: 88  PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED 147
           P  ++ +++A ++A G+ YL+       +H D+  +N ++ E +T KI DFG+ +   E 
Sbjct: 125 PSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYET 181
Query: 148 FVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEII 202
               K  KG     +M+PE  K    +  +DV+ +G+VL E           A +P    
Sbjct: 182 DYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATL-------AEQP---- 230
Query: 203 LTNWVYKCFINRELNKLV-RGTKVDKKN--LENLVKVGLWCVQDEPALRP 249
                Y+   N ++ + V  G  +DK +   + L ++   C Q  P +RP
Sbjct: 231 -----YQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRP 275

>pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A Benzimidazole Inhibitor Length = 307

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 27/170 (15%)
Query: 88  PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED 147
           P  ++ +++A ++A G+ YL+       +H D+  +N ++ E +T KI DFG+ +   E 
Sbjct: 128 PSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYET 184
Query: 148 FVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEII 202
               K  KG     +M+PE  K    +  +DV+ +G+VL E           A +P    
Sbjct: 185 DYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATL-------AEQP---- 233
Query: 203 LTNWVYKCFINRELNKLV-RGTKVDKKN--LENLVKVGLWCVQDEPALRP 249
                Y+   N ++ + V  G  +DK +   + L ++   C Q  P +RP
Sbjct: 234 -----YQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRP 278

>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor (Igf-1r-Wt) Complex With Bms-754807 [1-(4-((5-Cyclopropyl- 1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2, 4]triazin-2-Yl)-N- (6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide] Length = 315

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 27/170 (15%)
Query: 88  PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED 147
           P  ++ +++A ++A G+ YL+       +H D+  +N ++ E +T KI DFG+ +   E 
Sbjct: 128 PSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYET 184
Query: 148 FVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEII 202
               K  KG     +M+PE  K    +  +DV+ +G+VL E           A +P    
Sbjct: 185 DYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATL-------AEQP---- 233
Query: 203 LTNWVYKCFINRELNKLV-RGTKVDKKN--LENLVKVGLWCVQDEPALRP 249
                Y+   N ++ + V  G  +DK +   + L ++   C Q  P +RP
Sbjct: 234 -----YQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRP 278

>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat Length = 332

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 16/147 (10%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQR--VRIALDVAKGILYLHDECEPPILHCDIKPQNIL-- 126
           V  G L D I        ++ +R   R+   V   + YLHD     I+H D+KP+N+L  
Sbjct: 98  VSGGELFDRIV----EKGFYTERDASRLIFQVLDAVKYLHDLG---IVHRDLKPENLLYY 150
Query: 127 -MDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAPECYKRTPISVKADVYGYGIVLLE 183
            +DE     I DFGL+K+ +   V+       GY+APE   + P S   D +  G++   
Sbjct: 151 SLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYI 210
Query: 184 TICCRKNM--EIDASKPEEIILTNWVY 208
            +C       E DA   E+I+   + +
Sbjct: 211 LLCGYPPFYDENDAKLFEQILKAEYEF 237

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 30/188 (15%)
Query: 71  VRNGSLTDIIFCSAERNPYWN--QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD 128
           +  GSL D  F   E   Y    Q V +A  +A G+ Y+        +H D++  NIL+ 
Sbjct: 87  MSKGSLLD--FLKGETGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVG 141
Query: 129 EFWTAKILDFGLAKLPNEDFVIDKRDKGY----MAPECYKRTPISVKADVYGYGIVLLET 184
           E    K+ DFGLA+L  ++    ++   +     APE       ++K+DV+ +GI+L E 
Sbjct: 142 ENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE- 200
Query: 185 ICCRKNMEIDASKPEEIILTNWVYKCFINRE-LNKLVRGTKV--DKKNLENLVKVGLWCV 241
                 +      P         Y   +NRE L+++ RG ++    +  E+L  +   C 
Sbjct: 201 ------LTTKGRVP---------YPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCW 245
Query: 242 QDEPALRP 249
           + EP  RP
Sbjct: 246 RKEPEERP 253

>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase Domain (2p) In Complex With A Bis-Azaindole Inhibitor Length = 336

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 27/170 (15%)
Query: 88  PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED 147
           P  ++ +++A ++A G+ YL+       +H D+  +N ++ E +T KI DFG+ +   E 
Sbjct: 157 PSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYET 213
Query: 148 FVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEII 202
               K  KG     +M+PE  K    +  +DV+ +G+VL E           A +P    
Sbjct: 214 DYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATL-------AEQP---- 262
Query: 203 LTNWVYKCFINRELNKLV-RGTKVDKKN--LENLVKVGLWCVQDEPALRP 249
                Y+   N ++ + V  G  +DK +   + L ++   C Q  P +RP
Sbjct: 263 -----YQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRP 307

>pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo Pyridine Inhibitor Length = 317

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 27/170 (15%)
Query: 88  PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED 147
           P   + +++A ++A G+ YL+ +     +H D+  +N ++   +T KI DFG+ +   E 
Sbjct: 126 PTLQEMIQMAAEIADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYET 182
Query: 148 FVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEII 202
               K  KG     +MAPE  K    +  +D++ +G+VL E           A +P    
Sbjct: 183 DYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSL-------AEQP---- 231
Query: 203 LTNWVYKCFINRELNKLVR-GTKVDKKN--LENLVKVGLWCVQDEPALRP 249
                Y+   N ++ K V  G  +D+ +   E +  +   C Q  P +RP
Sbjct: 232 -----YQGLSNEQVLKFVMDGGYLDQPDNCPERVTDLMRMCWQFNPKMRP 276

>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-320 In Complex With Atp Length = 320

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 69/150 (46%), Gaps = 14/150 (9%)
Query: 67  IERPVRNGSLTDIIFCSAERNPYWNQRV-RIALDVAKGILYLHDECEPPILHCDIKPQNI 125
           I + V  G L D I    E+  Y  +   R+   V   + YLHD     I+H D+KP+N+
Sbjct: 94  IMQLVSGGELFDRI---VEKGFYTERDASRLIFQVLDAVKYLHD---LGIVHRDLKPENL 147
Query: 126 L---MDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAPECYKRTPISVKADVYGYGIV 180
           L   +DE     I DFGL+K+ +   V+       GY+APE   + P S   D +  G++
Sbjct: 148 LYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVI 207
Query: 181 LLETICCRKNM--EIDASKPEEIILTNWVY 208
               +C       E DA   E+I+   + +
Sbjct: 208 AYILLCGYPPFYDENDAKLFEQILKAEYEF 237

>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5 Length = 317

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 9/118 (7%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +  G+LTDI+  +        Q   + L V + + YLH++    ++H DIK  +IL+   
Sbjct: 124 LEGGALTDIVTHTRMNE---EQIATVCLSVLRALSYLHNQG---VIHRDIKSDSILLTSD 177
Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETI 185
              K+ DFG     +++    K   G   +MAPE   R P   + D++  GI+++E I
Sbjct: 178 GRIKLSDFGFCAQVSKEVPKRKXLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMI 235

>pdb|1P4O|A Chain A, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a Resolution. Length = 322

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 27/170 (15%)
Query: 88  PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED 147
           P  ++ +++A ++A G+ YL+       +H D+  +N ++ E +T KI DFG+ +   E 
Sbjct: 135 PSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYET 191
Query: 148 FVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEII 202
               K  KG     +M+PE  K    +  +DV+ +G+VL E           A +P    
Sbjct: 192 DYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATL-------AEQP---- 240
Query: 203 LTNWVYKCFINRELNKLV-RGTKVDKKN--LENLVKVGLWCVQDEPALRP 249
                Y+   N ++ + V  G  +DK +   + L ++   C Q  P +RP
Sbjct: 241 -----YQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRP 285

>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-315 In Complex With Atp Length = 315

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 14/146 (9%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRV-RIALDVAKGILYLHDECEPPILHCDIKPQNIL--- 126
           V  G L D I    E+  Y  +   R+   V   + YLHD     I+H D+KP+N+L   
Sbjct: 98  VSGGELFDRI---VEKGFYTERDASRLIFQVLDAVKYLHD---LGIVHRDLKPENLLYYS 151
Query: 127 MDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAPECYKRTPISVKADVYGYGIVLLET 184
           +DE     I DFGL+K+ +   V+       GY+APE   + P S   D +  G++    
Sbjct: 152 LDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYIL 211
Query: 185 ICCRKNM--EIDASKPEEIILTNWVY 208
           +C       E DA   E+I+   + +
Sbjct: 212 LCGYPPFYDENDAKLFEQILKAEYEF 237

>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth Factor-1 Receptor Kinase Domain Length = 322

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 27/170 (15%)
Query: 88  PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED 147
           P  ++ +++A ++A G+ YL+       +H D+  +N ++ E +T KI DFG+ +   E 
Sbjct: 135 PSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYET 191
Query: 148 FVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEII 202
               K  KG     +M+PE  K    +  +DV+ +G+VL E           A +P    
Sbjct: 192 DYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATL-------AEQP---- 240
Query: 203 LTNWVYKCFINRELNKLV-RGTKVDKKN--LENLVKVGLWCVQDEPALRP 249
                Y+   N ++ + V  G  +DK +   + L ++   C Q  P +RP
Sbjct: 241 -----YQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRP 285

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           GSL D +          +  ++ +LDV + + YL        +H D+  +N+L+ E   A
Sbjct: 85  GSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVA 141
Query: 134 KILDFGLAKLPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLE 183
           K+ DFGL K  +      K    + APE  +    S K+DV+ +GI+L E
Sbjct: 142 KVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWE 191

>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-293 In Complex With Atp Length = 293

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 14/146 (9%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRV-RIALDVAKGILYLHDECEPPILHCDIKPQNIL--- 126
           V  G L D I    E+  Y  +   R+   V   + YLHD     I+H D+KP+N+L   
Sbjct: 98  VSGGELFDRI---VEKGFYTERDASRLIFQVLDAVKYLHD---LGIVHRDLKPENLLYYS 151
Query: 127 MDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAPECYKRTPISVKADVYGYGIVLLET 184
           +DE     I DFGL+K+ +   V+       GY+APE   + P S   D +  G++    
Sbjct: 152 LDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYIL 211
Query: 185 ICCRKNM--EIDASKPEEIILTNWVY 208
           +C       E DA   E+I+   + +
Sbjct: 212 LCGYPPFYDENDAKLFEQILKAEYEF 237

>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A Thiazolopyrimidine Inhibitor Length = 324

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 55/100 (55%), Gaps = 11/100 (11%)
Query: 91  NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVI 150
            Q +  A DVA+G+ YL    +   +H ++  +NIL+ E + AKI DFGL++   E +V 
Sbjct: 139 QQLLHFAADVARGMDYL---SQKQFIHRNLAARNILVGENYVAKIADFGLSR-GQEVYV- 193
Query: 151 DKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
            K+  G     +MA E    +  +  +DV+ YG++L E +
Sbjct: 194 -KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIV 232

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           GSL D +          +  ++ +LDV + + YL        +H D+  +N+L+ E   A
Sbjct: 100 GSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVA 156
Query: 134 KILDFGLAKLPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLE 183
           K+ DFGL K  +      K    + APE  +    S K+DV+ +GI+L E
Sbjct: 157 KVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWE 206

>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 318

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 9/100 (9%)
Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-LPNEDFVI 150
           Q +  A  + +G+ YLH +     +H D+  +N+L+D     KI DFGLAK +P      
Sbjct: 135 QLLLFAQQICEGMAYLHAQH---YIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEXY 191
Query: 151 DKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
             R+ G     + APEC K       +DV+ +G+ L E +
Sbjct: 192 RVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELL 231

>pdb|1ZXE|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n Inactivating Mutant In Apo Form Length = 303

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 28/134 (20%)
Query: 73  NGSLTDIIFC---SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE 129
           N +L D+I     + +R+ YW    R+   + + + Y+H +    I+H ++KP NI +DE
Sbjct: 99  NRTLYDLIHSENLNQQRDEYW----RLFRQILEALSYIHSQG---IIHRNLKPXNIFIDE 151
Query: 130 FWTAKILDFGLAKLPNEDFVIDKRDKG-----------------YMAPECYKRT-PISVK 171
               KI DFGLAK  +    I K D                   Y+A E    T   + K
Sbjct: 152 SRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAXYVATEVLDGTGHYNEK 211
Query: 172 ADVYGYGIVLLETI 185
            D Y  GI+  E I
Sbjct: 212 IDXYSLGIIFFEXI 225

>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 90  WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT-----AKILDFGLAKLP 144
           W+ ++R+ LD+A GI Y+ ++  PPI+H D++  NI +          AK+ DFGL++  
Sbjct: 121 WSVKLRLMLDIALGIEYMQNQ-NPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQS 179
Query: 145 NEDFVIDKRDKGYMAPECY--KRTPISVKADVYGYGIVL 181
                    +  +MAPE    +    + KAD Y + ++L
Sbjct: 180 VHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMIL 218

>pdb|3ALN|A Chain A, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase Domain Complexed With Amp-Pnp Length = 327

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 50/101 (49%), Gaps = 10/101 (9%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRD 154
           +I L   K + +L +  +  I+H DIKP NIL+D     K+ DFG++     D +   RD
Sbjct: 129 KITLATVKALNHLKENLK--IIHRDIKPSNILLDRSGNIKLCDFGISG-QLVDSIAKTRD 185
Query: 155 KG---YMAPE----CYKRTPISVKADVYGYGIVLLETICCR 188
            G   YMAPE       R    V++DV+  GI L E    R
Sbjct: 186 AGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGR 226

>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase 1) Length = 294

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 96  IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK 155
           I  ++ KG+ YLH E +   +H DIK  N+L+ E    K+ DFG+A    +  +      
Sbjct: 121 ILREILKGLDYLHSERK---IHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNXFV 177
Query: 156 G---YMAPECYKRTPISVKADVYGYGIVLLE 183
           G   +MAPE  K++    KAD++  GI  +E
Sbjct: 178 GTPFWMAPEVIKQSAYDFKADIWSLGITAIE 208

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           GSL D +          +  ++ +LDV + + YL        +H D+  +N+L+ E   A
Sbjct: 272 GSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVA 328
Query: 134 KILDFGLAKLPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLE 183
           K+ DFGL K  +      K    + APE  +    S K+DV+ +GI+L E
Sbjct: 329 KVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWE 378

>pdb|3D94|A Chain A, Crystal Structure Of The Insulin-Like Growth Factor-1 Receptor Kinase In Complex With Pqip Length = 301

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 27/170 (15%)
Query: 88  PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED 147
           P  ++ +++A ++A G+ YL+       +H D+  +N  + E +T KI DFG+ +   E 
Sbjct: 122 PSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCXVAEDFTVKIGDFGMTRDIYET 178
Query: 148 FVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEII 202
               K  KG     +M+PE  K    +  +DV+ +G+VL E           A +P    
Sbjct: 179 DYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATL-------AEQP---- 227
Query: 203 LTNWVYKCFINRELNKLV-RGTKVDKKN--LENLVKVGLWCVQDEPALRP 249
                Y+   N ++ + V  G  +DK +   + L+++   C Q  P +RP
Sbjct: 228 -----YQGLSNEQVLRFVMEGGLLDKPDNCPDMLLELMRMCWQYNPKMRP 272

>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420 Length = 504

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 9/96 (9%)
Query: 96  IALDVAKGILYLHDECEPPILHCDIKPQNILMD---EFWTAKILDFGLAKLPNEDFVIDK 152
           I   +  GI YLH   +  I+H DIKP+NIL++        KI+DFGL+   ++D+ +  
Sbjct: 151 IMKQILSGICYLH---KHNIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDYKLRD 207
Query: 153 R--DKGYMAPECYKRTPISVKADVYGYGIVLLETIC 186
           R     Y+APE  K+   + K DV+  G+++   +C
Sbjct: 208 RLGTAYYIAPEVLKK-KYNEKCDVWSCGVIMYILLC 242

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 11/119 (9%)
Query: 71  VRNGSLTDIIFCSAERNPYWN--QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD 128
           +  GSL D  F   E   Y    Q V +A  +A G+ Y+        +H D++  NIL+ 
Sbjct: 94  MSKGSLLD--FLKGEMGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVG 148
Query: 129 EFWTAKILDFGLAKLPNEDFVIDKRDKGY----MAPECYKRTPISVKADVYGYGIVLLE 183
           E    K+ DFGLA+L  ++    ++   +     APE       ++K+DV+ +GI+L E
Sbjct: 149 ENLVCKVADFGLARLIEDNEXTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE 207

>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes Length = 290

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 9/100 (9%)
Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---- 147
           Q+++ A+ + KG+ YL        +H D+  +N+L++     KI DFGL K    D    
Sbjct: 115 QQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEXX 171
Query: 148 FVIDKRDKG--YMAPECYKRTPISVKADVYGYGIVLLETI 185
            V D RD    + APEC  ++   + +DV+ +G+ L E +
Sbjct: 172 TVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELL 211

>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1) Length = 350

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 106 YLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG---YMAPEC 162
           ++HD     ILH DIK QNI + +  T ++ DFG+A++ N    + +   G   Y++PE 
Sbjct: 140 HVHDR---KILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARACIGTPYYLSPEI 196
Query: 163 YKRTPISVKADVYGYGIVLLETICCRKNMEIDASK 197
            +  P + K+D++  G VL E    +   E  + K
Sbjct: 197 CENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMK 231

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 11/119 (9%)
Query: 71  VRNGSLTDIIFCSAERNPYWN--QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD 128
           +  GSL D  F   E   Y    Q V +A  +A G+ Y+        +H D++  NIL+ 
Sbjct: 94  MSKGSLLD--FLKGEMGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVG 148
Query: 129 EFWTAKILDFGLAKLPNEDFVIDKRDKGY----MAPECYKRTPISVKADVYGYGIVLLE 183
           E    K+ DFGLA+L  ++    ++   +     APE       ++K+DV+ +GI+L E
Sbjct: 149 ENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE 207

>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA---KLPNEDFVID 151
           R    +  G++YLH      I H DIKP+N+L+DE    KI DFGLA   +  N + +++
Sbjct: 108 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLN 164
Query: 152 KRDKG--YMAPECYKRTPISVK-ADVYGYGIVL 181
           K      Y+APE  KR     +  DV+  GIVL
Sbjct: 165 KMXGTLPYVAPELLKRREFHAEPVDVWSCGIVL 197

>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA---KLPNEDFVID 151
           R    +  G++YLH      I H DIKP+N+L+DE    KI DFGLA   +  N + +++
Sbjct: 108 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLN 164
Query: 152 KRDKG--YMAPECYKRTPISVK-ADVYGYGIVL 181
           K      Y+APE  KR     +  DV+  GIVL
Sbjct: 165 KMXGTLPYVAPELLKRREFHAEPVDVWSCGIVL 197

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 11/119 (9%)
Query: 71  VRNGSLTDIIFCSAERNPYWN--QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD 128
           +  GSL D  F   E   Y    Q V +A  +A G+ Y+        +H D++  NIL+ 
Sbjct: 83  MSKGSLLD--FLKGEMGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVG 137
Query: 129 EFWTAKILDFGLAKLPNEDFVIDKRDKGY----MAPECYKRTPISVKADVYGYGIVLLE 183
           E    K+ DFGLA+L  ++    ++   +     APE       ++K+DV+ +GI+L E
Sbjct: 138 ENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE 196

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 11/119 (9%)
Query: 71  VRNGSLTDIIFCSAERNPYWN--QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD 128
           +  GSL D  F   E   Y    Q V +A  +A G+ Y+        +H D++  NIL+ 
Sbjct: 94  MSKGSLLD--FLKGEMGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVG 148
Query: 129 EFWTAKILDFGLAKLPNEDFVIDKRDKGY----MAPECYKRTPISVKADVYGYGIVLLE 183
           E    K+ DFGLA+L  ++    ++   +     APE       ++K+DV+ +GI+L E
Sbjct: 149 ENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE 207

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 11/119 (9%)
Query: 71  VRNGSLTDIIFCSAERNPYWN--QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD 128
           +  GSL D  F   E   Y    Q V +A  +A G+ Y+        +H D++  NIL+ 
Sbjct: 94  MSKGSLLD--FLKGEMGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVG 148
Query: 129 EFWTAKILDFGLAKLPNEDFVIDKRDKGY----MAPECYKRTPISVKADVYGYGIVLLE 183
           E    K+ DFGLA+L  ++    ++   +     APE       ++K+DV+ +GI+L E
Sbjct: 149 ENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE 207

>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 30/188 (15%)
Query: 71  VRNGSLTDIIFCSAERNPYWN--QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD 128
           +  GSL D  F   E   Y    Q V ++  +A G+ Y+        +H D++  NIL+ 
Sbjct: 91  MNKGSLLD--FLKGETGKYLRLPQLVDMSAQIASGMAYVERMN---YVHRDLRAANILVG 145
Query: 129 EFWTAKILDFGLAKLPNEDFVIDKRDKGY----MAPECYKRTPISVKADVYGYGIVLLET 184
           E    K+ DFGLA+L  ++    ++   +     APE       ++K+DV+ +GI+L E 
Sbjct: 146 ENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE- 204
Query: 185 ICCRKNMEIDASKPEEIILTNWVYKCFINRE-LNKLVRGTKV--DKKNLENLVKVGLWCV 241
                 +      P         Y   +NRE L+++ RG ++    +  E+L  +   C 
Sbjct: 205 ------LTTKGRVP---------YPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCW 249
Query: 242 QDEPALRP 249
           + EP  RP
Sbjct: 250 RKEPEERP 257

>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA---KLPNEDFVID 151
           R    +  G++YLH      I H DIKP+N+L+DE    KI DFGLA   +  N + +++
Sbjct: 108 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLN 164
Query: 152 KRDKG--YMAPECYKRTPISVK-ADVYGYGIVL 181
           K      Y+APE  KR     +  DV+  GIVL
Sbjct: 165 KMXGTLPYVAPELLKRREFHAEPVDVWSCGIVL 197

>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin Length = 305

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 22/119 (18%)
Query: 76  LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKI 135
           L+  +  + E   ++   + +ALD      +LH      I++ D+KP+NIL+DE    K+
Sbjct: 118 LSKEVMFTEEDVKFYLAELALALD------HLHSLG---IIYRDLKPENILLDEEGHIKL 168
Query: 136 LDFGLAKLPNEDFVIDKRDKG--------YMAPECYKRTPISVKADVYGYGIVLLETIC 186
            DFGL+K       ID   K         YMAPE   R   +  AD + +G+++ E + 
Sbjct: 169 TDFGLSKES-----IDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLT 222

>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex With Flavonoid Glycoside Sl0101 Length = 304

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 22/119 (18%)
Query: 76  LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKI 135
           L+  +  + E   ++   + +ALD      +LH      I++ D+KP+NIL+DE    K+
Sbjct: 117 LSKEVMFTEEDVKFYLAELALALD------HLHSLG---IIYRDLKPENILLDEEGHIKL 167
Query: 136 LDFGLAKLPNEDFVIDKRDKG--------YMAPECYKRTPISVKADVYGYGIVLLETIC 186
            DFGL+K       ID   K         YMAPE   R   +  AD + +G+++ E + 
Sbjct: 168 TDFGLSKES-----IDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLT 221

>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By Structure Based Design And Optimization Of Thiophene Carboxamide Ureas Length = 276

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA---KLPNEDFVID 151
           R    +  G++YLH      I H DIKP+N+L+DE    KI DFGLA   +  N + +++
Sbjct: 109 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLN 165
Query: 152 KRDKG--YMAPECYKRTPISVK-ADVYGYGIVL 181
           K      Y+APE  KR     +  DV+  GIVL
Sbjct: 166 KMXGTLPYVAPELLKRREFHAEPVDVWSCGIVL 198

>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 9/100 (9%)
Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---- 147
           Q+++ A+ + KG+ YL        +H D+  +N+L++     KI DFGL K    D    
Sbjct: 127 QQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEXX 183
Query: 148 FVIDKRDKG--YMAPECYKRTPISVKADVYGYGIVLLETI 185
            V D RD    + APEC  ++   + +DV+ +G+ L E +
Sbjct: 184 TVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELL 223

>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 11/119 (9%)
Query: 71  VRNGSLTDIIFCSAERNPYWN--QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD 128
           +  GSL D  F   E   Y    Q V +A  +A G+ Y+        +H D++  NIL+ 
Sbjct: 94  MSKGSLLD--FLKGEMGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVG 148
Query: 129 EFWTAKILDFGLAKLPNEDFVIDKRDKGY----MAPECYKRTPISVKADVYGYGIVLLE 183
           E    K+ DFGLA+L  ++    ++   +     APE       ++K+DV+ +GI+L E
Sbjct: 149 ENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE 207

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 11/119 (9%)
Query: 71  VRNGSLTDIIFCSAERNPYWN--QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD 128
           +  GSL D  F   E   Y    Q V +A  +A G+ Y+        +H D++  NIL+ 
Sbjct: 85  MSKGSLLD--FLKGEMGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVG 139
Query: 129 EFWTAKILDFGLAKLPNEDFVIDKRDKGY----MAPECYKRTPISVKADVYGYGIVLLE 183
           E    K+ DFGLA+L  ++    ++   +     APE       ++K+DV+ +GI+L E
Sbjct: 140 ENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE 198

>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54 Length = 323

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 17/97 (17%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRD 154
           R    +  G++YLH      I H DIKP+N+L+DE    KI DFGLA +    F  + R+
Sbjct: 109 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATV----FRYNNRE 161
Query: 155 K---------GYMAPECYKRTPISVK-ADVYGYGIVL 181
           +          Y+APE  KR     +  DV+  GIVL
Sbjct: 162 RLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVL 198

>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20 Length = 322

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 17/97 (17%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRD 154
           R    +  G++YLH      I H DIKP+N+L+DE    KI DFGLA +    F  + R+
Sbjct: 108 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATV----FRYNNRE 160
Query: 155 K---------GYMAPECYKRTPISVK-ADVYGYGIVL 181
           +          Y+APE  KR     +  DV+  GIVL
Sbjct: 161 RLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVL 197

>pdb|3O17|A Chain A, Crystal Structure Of Jnk1-Alpha1 Isoform Length = 370

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAP 160
           GI +LH      I+H D+KP NI++    T KILDFGLA+     F+++     + Y AP
Sbjct: 138 GIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMEPEVVTRYYRAP 194
Query: 161 ECYKRTPISVKADVYGYGIVLLETICCR 188
           E           D++  G ++ E +C +
Sbjct: 195 EVILGMGYKENVDIWSVGCIMGEMVCHK 222

>pdb|4FST|A Chain A, Crystal Structure Of The Chk1 Length = 269

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA---KLPNEDFVID 151
           R    +  G++YLH      I H DIKP+N+L+DE    KI DFGLA   +  N + +++
Sbjct: 108 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLN 164
Query: 152 KRDKG--YMAPECYKRTPISVK-ADVYGYGIVL 181
           K      Y+APE  KR     +  DV+  GIVL
Sbjct: 165 KMXGTLPYVAPELLKRREFHAEPVDVWSCGIVL 197

>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 13/135 (9%)
Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           GSL D +   AER  +  + ++    + KG+ YL  +     +H D+  +NIL++     
Sbjct: 101 GSLRDYLQAHAERIDHI-KLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRV 156
Query: 134 KILDFGLAK-LPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICC 187
           KI DFGL K LP +      ++ G     + APE    +  SV +DV+ +G+VL E    
Sbjct: 157 KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTY 216
Query: 188 RKNMEIDASKPEEII 202
              +E   S P E +
Sbjct: 217 ---IEKSKSPPAEFM 228

>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7 Length = 346

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK---LPNEDFVIDKRDKGYM 158
           +G+ YLH      ILH D+KP N+L+DE    K+ DFGLAK    PN  +      + Y 
Sbjct: 123 QGLEYLHQHW---ILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYXHQVVTRWYR 179
Query: 159 APE-CYKRTPISVKADVYGYGIVLLETI 185
           APE  +      V  D++  G +L E +
Sbjct: 180 APELLFGARMYGVGVDMWAVGCILAELL 207

>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N- Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 Length = 325

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 22/119 (18%)
Query: 76  LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKI 135
           L+  +  + E   ++   + +ALD      +LH      I++ D+KP+NIL+DE    K+
Sbjct: 117 LSKEVMFTEEDVKFYLAELALALD------HLHSLG---IIYRDLKPENILLDEEGHIKL 167
Query: 136 LDFGLAKLPNEDFVIDKRDKG--------YMAPECYKRTPISVKADVYGYGIVLLETIC 186
            DFGL+K       ID   K         YMAPE   R   +  AD + +G+++ E + 
Sbjct: 168 TDFGLSKES-----IDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLT 221

>pdb|3ENM|A Chain A, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory Dimer Length = 316

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFV--IDK 152
           +IA+ + K + +LH +    ++H D+KP N+L++     K  DFG++    +D    ID 
Sbjct: 140 KIAVSIVKALEHLHSKLS--VIHRDVKPSNVLINALGQVKXCDFGISGYLVDDVAKDIDA 197
Query: 153 RDKGYMAPE----CYKRTPISVKADVYGYGIVLLETICCR 188
             K Y APE       +   SVK+D++  GI  +E    R
Sbjct: 198 GCKPYXAPERINPELNQKGYSVKSDIWSLGITXIELAILR 237

>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-Thiadiazole- Thiophene Inhibitor Length = 302

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 9/100 (9%)
Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-LPNEDFVI 150
           Q +  A  + +G+ YLH +     +H ++  +N+L+D     KI DFGLAK +P      
Sbjct: 118 QLLLFAQQICEGMAYLHSQ---HYIHRNLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYY 174
Query: 151 DKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
             R+ G     + APEC K       +DV+ +G+ L E +
Sbjct: 175 RVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELL 214

>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An Arylamide Inhibitor Length = 333

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 26/181 (14%)
Query: 77  TDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKIL 136
           TD  F  A         +  +  VA+G+ +L        +H D+  +N+L+     AKI 
Sbjct: 150 TDPAFAIANSTASTRDLLHFSSQVAQGMAFL---ASKNCIHRDVAARNVLLTNGHVAKIG 206
Query: 137 DFGLAK--LPNEDFVIDKRDK---GYMAPECYKRTPISVKADVYGYGIVLLETICCRKNM 191
           DFGLA+  + + ++++    +    +MAPE       +V++DV+ YGI+L E      N 
Sbjct: 207 DFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLN- 265
Query: 192 EIDASKPEEIILTNWVYKCFINRELNKLVR-GTKVDKKNL--ENLVKVGLWCVQDEPALR 248
                 P   IL        +N +  KLV+ G ++ +     +N+  +   C   EP  R
Sbjct: 266 ------PYPGIL--------VNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHR 311
Query: 249 P 249
           P
Sbjct: 312 P 312

>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights Into Hydrogen Bonding And Protein-Ligand Affinity Length = 297

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 17/97 (17%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRD 154
           R    +  G++YLH      I H DIKP+N+L+DE    KI DFGLA +    F  + R+
Sbjct: 109 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATV----FRYNNRE 161
Query: 155 K---------GYMAPECYKRTPISVK-ADVYGYGIVL 181
           +          Y+APE  KR     +  DV+  GIVL
Sbjct: 162 RLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVL 198

>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint Kinase Chk1 Length = 289

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 17/97 (17%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRD 154
           R    +  G++YLH      I H DIKP+N+L+DE    KI DFGLA +    F  + R+
Sbjct: 109 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATV----FRYNNRE 161
Query: 155 K---------GYMAPECYKRTPISVK-ADVYGYGIVL 181
           +          Y+APE  KR     +  DV+  GIVL
Sbjct: 162 RLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVL 198

>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine Analog Length = 295

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 17/97 (17%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRD 154
           R    +  G++YLH      I H DIKP+N+L+DE    KI DFGLA +    F  + R+
Sbjct: 109 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATV----FRYNNRE 161
Query: 155 K---------GYMAPECYKRTPISVK-ADVYGYGIVL 181
           +          Y+APE  KR     +  DV+  GIVL
Sbjct: 162 RLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVL 198

>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 17/97 (17%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRD 154
           R    +  G++YLH      I H DIKP+N+L+DE    KI DFGLA +    F  + R+
Sbjct: 108 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATV----FRYNNRE 160
Query: 155 K---------GYMAPECYKRTPISVK-ADVYGYGIVL 181
           +          Y+APE  KR     +  DV+  GIVL
Sbjct: 161 RLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVL 197

>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 17/97 (17%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRD 154
           R    +  G++YLH      I H DIKP+N+L+DE    KI DFGLA +    F  + R+
Sbjct: 108 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATV----FRYNNRE 160
Query: 155 K---------GYMAPECYKRTPISVK-ADVYGYGIVL 181
           +          Y+APE  KR     +  DV+  GIVL
Sbjct: 161 RLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVL 197

>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1 Length = 278

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 17/97 (17%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRD 154
           R    +  G++YLH      I H DIKP+N+L+DE    KI DFGLA +    F  + R+
Sbjct: 107 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATV----FRYNNRE 159
Query: 155 K---------GYMAPECYKRTPISVK-ADVYGYGIVL 181
           +          Y+APE  KR     +  DV+  GIVL
Sbjct: 160 RLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVL 196

>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Complexed With The Inhibitor Pp1 Length = 314

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 25/164 (15%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR 153
           +  A  +++G+ YL    E  ++H D+  +NIL+ E    KI DFGL++   E+    KR
Sbjct: 153 ISFAWQISQGMQYL---AEMSLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSXVKR 209
Query: 154 DKG-----YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVY 208
            +G     +MA E       + ++DV+ +G++L E +    N       PE         
Sbjct: 210 SQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGN-PYPGIPPE--------- 259
Query: 209 KCFINRELNKLVRGTKVDKKN--LENLVKVGLWCVQDEPALRPM 250
                R  N L  G ++++ +   E + ++ L C + EP  RP+
Sbjct: 260 -----RLFNLLKTGHRMERPDNCSEEMYRLMLQCWKQEPDKRPV 298

>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 17/97 (17%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRD 154
           R    +  G++YLH      I H DIKP+N+L+DE    KI DFGLA +    F  + R+
Sbjct: 108 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATV----FRYNNRE 160
Query: 155 K---------GYMAPECYKRTPISVK-ADVYGYGIVL 181
           +          Y+APE  KR     +  DV+  GIVL
Sbjct: 161 RLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVL 197

>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase Mst4 In Complex With An Quinazolin Length = 301

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 99  DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG-- 156
           ++ KG+ YLH E +   +H DIK  N+L+ E    K+ DFG+A    +  +      G  
Sbjct: 128 EILKGLDYLHSEKK---IHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTP 184
Query: 157 -YMAPECYKRTPISVKADVYGYGIVLLE 183
            +MAPE  +++    KAD++  GI  +E
Sbjct: 185 FWMAPEVIQQSAYDSKADIWSLGITAIE 212

>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 25/164 (15%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR 153
           +  A  +++G+ YL    E  ++H D+  +NIL+ E    KI DFGL++   E+    KR
Sbjct: 153 ISFAWQISQGMQYL---AEMKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKR 209
Query: 154 DKG-----YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVY 208
            +G     +MA E       + ++DV+ +G++L E +    N       PE         
Sbjct: 210 SQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGN-PYPGIPPE--------- 259
Query: 209 KCFINRELNKLVRGTKVDKKN--LENLVKVGLWCVQDEPALRPM 250
                R  N L  G ++++ +   E + ++ L C + EP  RP+
Sbjct: 260 -----RLFNLLKTGHRMERPDNCSEEMYRLMLQCWKQEPDKRPV 298

>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 30/188 (15%)
Query: 71  VRNGSLTDIIFCSAERNPYWN--QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD 128
           +  GSL D  F   E   Y    Q V ++  +A G+ Y+        +H D++  NIL+ 
Sbjct: 91  MNKGSLLD--FLKGETGKYLRLPQLVDMSAQIASGMAYVERMN---YVHRDLRAANILVG 145
Query: 129 EFWTAKILDFGLAKLPNEDFVIDKRDKGY----MAPECYKRTPISVKADVYGYGIVLLET 184
           E    K+ DFGLA+L  ++    ++   +     APE       ++K+DV+ +GI+L E 
Sbjct: 146 ENLVCKVADFGLARLIEDNEWTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE- 204
Query: 185 ICCRKNMEIDASKPEEIILTNWVYKCFINRE-LNKLVRGTKV--DKKNLENLVKVGLWCV 241
                 +      P         Y   +NRE L+++ RG ++    +  E+L  +   C 
Sbjct: 205 ------LTTKGRVP---------YPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCW 249
Query: 242 QDEPALRP 249
           + EP  RP
Sbjct: 250 RKEPEERP 257

>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint Kinase Inhibitors - Hit To Lead Exploration Length = 276

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 17/97 (17%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRD 154
           R    +  G++YLH      I H DIKP+N+L+DE    KI DFGLA +    F  + R+
Sbjct: 109 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATV----FRYNNRE 161
Query: 155 K---------GYMAPECYKRTPISVK-ADVYGYGIVL 181
           +          Y+APE  KR     +  DV+  GIVL
Sbjct: 162 RLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVL 198

>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 11/119 (9%)
Query: 71  VRNGSLTDIIFCSAERNPYWN--QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD 128
           +  GSL D  F   E   Y    Q V +A  +A G+ Y+        +H D+   NIL+ 
Sbjct: 94  MSKGSLLD--FLKGEMGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLAAANILVG 148
Query: 129 EFWTAKILDFGLAKLPNEDFVIDKRDKGY----MAPECYKRTPISVKADVYGYGIVLLE 183
           E    K+ DFGLA+L  ++    ++   +     APE       ++K+DV+ +GI+L E
Sbjct: 149 ENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE 207

>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994 Length = 269

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 17/97 (17%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRD 154
           R    +  G++YLH      I H DIKP+N+L+DE    KI DFGLA +    F  + R+
Sbjct: 108 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATV----FRYNNRE 160
Query: 155 K---------GYMAPECYKRTPISVK-ADVYGYGIVL 181
           +          Y+APE  KR     +  DV+  GIVL
Sbjct: 161 RLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVL 197

>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor Length = 269

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 17/97 (17%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRD 154
           R    +  G++YLH      I H DIKP+N+L+DE    KI DFGLA +    F  + R+
Sbjct: 109 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATV----FRYNNRE 161
Query: 155 K---------GYMAPECYKRTPISVK-ADVYGYGIVL 181
           +          Y+APE  KR     +  DV+  GIVL
Sbjct: 162 RLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVL 198

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 11/116 (9%)
Query: 74  GSLTDIIFCSAERNPYWN--QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 131
           GSL D  F   E   Y    Q V +A  +A G+ Y+        +H D++  NIL+ E  
Sbjct: 264 GSLLD--FLKGEMGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENL 318
Query: 132 TAKILDFGLAKLPNEDFVIDKRDKGY----MAPECYKRTPISVKADVYGYGIVLLE 183
             K+ DFGL +L  ++    ++   +     APE       ++K+DV+ +GI+L E
Sbjct: 319 VCKVADFGLGRLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE 374

>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 25/164 (15%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR 153
           +  A  +++G+ YL    E  ++H D+  +NIL+ E    KI DFGL++   E+    KR
Sbjct: 153 ISFAWQISQGMQYL---AEMKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSXVKR 209
Query: 154 DKG-----YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVY 208
            +G     +MA E       + ++DV+ +G++L E +    N       PE         
Sbjct: 210 SQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGN-PYPGIPPE--------- 259
Query: 209 KCFINRELNKLVRGTKVDKKN--LENLVKVGLWCVQDEPALRPM 250
                R  N L  G ++++ +   E + ++ L C + EP  RP+
Sbjct: 260 -----RLFNLLKTGHRMERPDNCSEEMYRLMLQCWKQEPDKRPV 298

>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017 Length = 268

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 17/97 (17%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRD 154
           R    +  G++YLH      I H DIKP+N+L+DE    KI DFGLA +    F  + R+
Sbjct: 108 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATV----FRYNNRE 160
Query: 155 K---------GYMAPECYKRTPISVK-ADVYGYGIVL 181
           +          Y+APE  KR     +  DV+  GIVL
Sbjct: 161 RLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVL 197

>pdb|2G01|A Chain A, Pyrazoloquinolones As Novel, Selective Jnk1 Inhibitors Length = 370

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAP 160
           GI +LH      I+H D+KP NI++    T KILDFGLA+     F+++     + Y AP
Sbjct: 138 GIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMEPEVVTRYYRAP 194
Query: 161 ECYKRTPISVKADVYGYGIVLLETICCR 188
           E           D++  G ++ E +C +
Sbjct: 195 EVILGMGYKENVDLWSVGCIMGEMVCHK 222

>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding Site Length = 271

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 17/97 (17%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRD 154
           R    +  G++YLH      I H DIKP+N+L+DE    KI DFGLA +    F  + R+
Sbjct: 108 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATV----FRYNNRE 160
Query: 155 K---------GYMAPECYKRTPISVK-ADVYGYGIVL 181
           +          Y+APE  KR     +  DV+  GIVL
Sbjct: 161 RLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVL 197

>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 302

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 9/100 (9%)
Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-LPNEDFVI 150
           Q +  A  + +G+ YLH +     +H ++  +N+L+D     KI DFGLAK +P      
Sbjct: 118 QLLLFAQQICEGMAYLHAQ---HYIHRNLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYY 174
Query: 151 DKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
             R+ G     + APEC K       +DV+ +G+ L E +
Sbjct: 175 RVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELL 214

>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A Pyrrolo-Pyridine Inhibitor Length = 273

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 17/97 (17%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRD 154
           R    +  G++YLH      I H DIKP+N+L+DE    KI DFGLA +    F  + R+
Sbjct: 109 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATV----FRYNNRE 161
Query: 155 K---------GYMAPECYKRTPISVK-ADVYGYGIVL 181
           +          Y+APE  KR     +  DV+  GIVL
Sbjct: 162 RLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVL 198

>pdb|3EKK|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor Length = 307

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 27/170 (15%)
Query: 88  PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED 147
           P   + +++A ++A G+ YL+ +     +H ++  +N ++   +T KI DFG+ +   E 
Sbjct: 128 PTLQEMIQMAAEIADGMAYLNAK---KFVHRNLAARNCMVAHDFTVKIGDFGMTRDIYET 184
Query: 148 FVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEII 202
               K  KG     +MAPE  K    +  +D++ +G+VL E           A +P    
Sbjct: 185 DYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSL-------AEQP---- 233
Query: 203 LTNWVYKCFINRELNKLVR-GTKVDKKN--LENLVKVGLWCVQDEPALRP 249
                Y+   N ++ K V  G  +D+ +   E +  +   C Q  P +RP
Sbjct: 234 -----YQGLSNEQVLKFVMDGGYLDQPDNCPERVTDLMRMCWQFNPNMRP 278

>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human Chk1 Kinase Domain Length = 273

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 17/97 (17%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRD 154
           R    +  G++YLH      I H DIKP+N+L+DE    KI DFGLA +    F  + R+
Sbjct: 108 RFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATV----FRYNNRE 160
Query: 155 K---------GYMAPECYKRTPISVK-ADVYGYGIVL 181
           +          Y+APE  KR     +  DV+  GIVL
Sbjct: 161 RLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVL 197

>pdb|1P14|A Chain A, Crystal Structure Of A Catalytic-Loop Mutant Of The Insulin Receptor Tyrosine Kinase Length = 306

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 27/170 (15%)
Query: 88  PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED 147
           P   + +++A ++A G+ YL+ +     +H ++  +N ++   +T KI DFG+ +   E 
Sbjct: 127 PTLQEMIQMAAEIADGMAYLNAK---KFVHRNLAARNCMVAHDFTVKIGDFGMTRDIYET 183
Query: 148 FVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEII 202
               K  KG     +MAPE  K    +  +D++ +G+VL E           A +P    
Sbjct: 184 DYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSL-------AEQP---- 232
Query: 203 LTNWVYKCFINRELNKLVR-GTKVDKKN--LENLVKVGLWCVQDEPALRP 249
                Y+   N ++ K V  G  +D+ +   E +  +   C Q  P +RP
Sbjct: 233 -----YQGLSNEQVLKFVMDGGYLDQPDNCPERVTDLMRMCWQFNPNMRP 277

>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 291

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 9/117 (7%)
Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-LPNEDFVI 150
           Q +  A  + +G+ YLH +     +H  +  +N+L+D     KI DFGLAK +P      
Sbjct: 113 QLLLFAQQICEGMAYLHAQ---HYIHRALAARNVLLDNDRLVKIGDFGLAKAVPEGHEYY 169
Query: 151 DKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEII 202
             R+ G     + APEC K       +DV+ +G+ L E +    + +   +K  E+I
Sbjct: 170 RVREDGDSPVFWYAPECLKECKFYYASDVWSFGVTLYELLTYCDSNQSPHTKFTELI 226

>pdb|4EJN|A Chain A, Crystal Structure Of Autoinhibited Form Of Akt1 In Complex With N-(4- (5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h- Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide Length = 446

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 11/109 (10%)
Query: 83  SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK 142
           S +R  ++   +  ALD      YLH   E  +++ D+K +N+++D+    KI DFGL K
Sbjct: 246 SEDRARFYGAEIVSALD------YLH--SEKNVVYRDLKLENLMLDKDGHIKITDFGLCK 297
Query: 143 LPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETICCR 188
              +D    K   G   Y+APE  +        D +G G+V+ E +C R
Sbjct: 298 EGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGR 346

>pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A Pyrimidinopyridone Inhibitor Length = 333

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 26/181 (14%)
Query: 77  TDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKIL 136
           TD  F  A         +  +  VA+G+ +L        +H D+  +N+L+     AKI 
Sbjct: 150 TDPAFAIANSTLSTRDLLHFSSQVAQGMAFL---ASKNCIHRDVAARNVLLTNGHVAKIG 206
Query: 137 DFGLAK--LPNEDFVIDKRDK---GYMAPECYKRTPISVKADVYGYGIVLLETICCRKNM 191
           DFGLA+  + + ++++    +    +MAPE       +V++DV+ YGI+L E      N 
Sbjct: 207 DFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLN- 265
Query: 192 EIDASKPEEIILTNWVYKCFINRELNKLVR-GTKVDKKNL--ENLVKVGLWCVQDEPALR 248
                 P   IL        +N +  KLV+ G ++ +     +N+  +   C   EP  R
Sbjct: 266 ------PYPGIL--------VNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHR 311
Query: 249 P 249
           P
Sbjct: 312 P 312

>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg- 1009247 Length = 270

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 76/182 (41%), Gaps = 24/182 (13%)
Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           GSL D +           + +  +  +A+G+ ++        +H D++  NIL+      
Sbjct: 94  GSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRN---YIHRDLRAANILVSASLVC 150
Query: 134 KILDFGLAKLPNEDFVIDKRDKGY----MAPECYKRTPISVKADVYGYGIVLLETICCRK 189
           KI DFGLA++  ++    +    +     APE       ++K+DV+ +GI+L+E +   +
Sbjct: 151 KIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGR 210
Query: 190 NMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKN--LENLVKVGLWCVQDEPAL 247
                 S PE I                 L RG ++ +     E L  + + C ++ P  
Sbjct: 211 IPYPGMSNPEVI---------------RALERGYRMPRPENCPEELYNIMMRCWKNRPEE 255
Query: 248 RP 249
           RP
Sbjct: 256 RP 257

>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 290

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 9/117 (7%)
Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-LPNEDFVI 150
           Q +  A  + +G+ YLH +     +H  +  +N+L+D     KI DFGLAK +P      
Sbjct: 112 QLLLFAQQICEGMAYLHAQ---HYIHRALAARNVLLDNDRLVKIGDFGLAKAVPEGHEYY 168
Query: 151 DKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEII 202
             R+ G     + APEC K       +DV+ +G+ L E +    + +   +K  E+I
Sbjct: 169 RVREDGDSPVFWYAPECLKECKFYYASDVWSFGVTLYELLTYCDSNQSPHTKFTELI 225

>pdb|3O96|A Chain A, Crystal Structure Of Human Akt1 With An Allosteric Inhibitor Length = 446

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 11/109 (10%)
Query: 83  SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK 142
           S +R  ++   +  ALD      YLH   E  +++ D+K +N+++D+    KI DFGL K
Sbjct: 249 SEDRARFYGAEIVSALD------YLH--SEKNVVYRDLKLENLMLDKDGHIKITDFGLCK 300
Query: 143 LPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETICCR 188
              +D    K   G   Y+APE  +        D +G G+V+ E +C R
Sbjct: 301 EGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGR 349

>pdb|1U59|A Chain A, Crystal Structure Of The Zap-70 Kinase Domain In Complex With Staurosporine Length = 287

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 10/119 (8%)
Query: 73  NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT 132
            G L   +    E  P  N    +   V+ G+ YL    E   +H D+  +N+L+     
Sbjct: 93  GGPLHKFLVGKREEIPVSNV-AELLHQVSMGMKYLE---EKNFVHRDLAARNVLLVNRHY 148
Query: 133 AKILDFGLAK-LPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
           AKI DFGL+K L  +D     R  G     + APEC      S ++DV+ YG+ + E +
Sbjct: 149 AKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEAL 207

>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG--YMA 159
           +G+ +LH  C   I+H D+KP+NIL+    T K+ DFGLA++ +    +D       Y A
Sbjct: 123 RGLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALDPVVVTLWYRA 179
Query: 160 PECYKRTPISVKADVYGYGIVLLE 183
           PE   ++  +   D++  G +  E
Sbjct: 180 PEVLLQSTYATPVDMWSVGCIFAE 203

>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain From D. Discoideum Bound To Appcp Length = 287

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 90  WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT-----AKILDFGLAKLP 144
           W+ ++R+ LD+A GI Y+ ++  PPI+H D++  NI +          AK+ DFG ++  
Sbjct: 121 WSVKLRLMLDIALGIEYMQNQ-NPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGTSQQS 179
Query: 145 NEDFVIDKRDKGYMAPECY--KRTPISVKADVYGYGIVL 181
                    +  +MAPE    +    + KAD Y + ++L
Sbjct: 180 VHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMIL 218

>pdb|3TZM|A Chain A, Tgf-Beta Receptor Type 1 In Complex With Sb431542 Length = 309

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 50/110 (45%), Gaps = 22/110 (20%)
Query: 94  VRIALDVAKGILYLHDEC-----EPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF 148
           +++AL  A G+ +LH E      +P I H D+K +NIL+ +  T  I D GLA     D 
Sbjct: 109 IKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA--VRHDS 166
Query: 149 VIDKRD---------KGYMAPEC------YKRTPISVKADVYGYGIVLLE 183
             D  D         K YMAPE        K      +AD+Y  G+V  E
Sbjct: 167 ATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWE 216

>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 75/178 (42%), Gaps = 26/178 (14%)
Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           GSL D +           + +  +  +A+G+ ++        +H D++  NIL+      
Sbjct: 261 GSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRN---YIHRDLRAANILVSASLVC 317
Query: 134 KILDFGLAKLPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEI 193
           KI DFGLA++    F I      + APE       ++K+DV+ +GI+L+E +   +    
Sbjct: 318 KIADFGLARV-GAKFPIK-----WTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYP 371
Query: 194 DASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKN--LENLVKVGLWCVQDEPALRP 249
             S PE I                 L RG ++ +     E L  + + C ++ P  RP
Sbjct: 372 GMSNPEVI---------------RALERGYRMPRPENCPEELYNIMMRCWKNRPEERP 414

>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma Gondii, Tgme49_018720 Length = 285

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 17/88 (19%)
Query: 103 GILYLHDECEPPILHCDIKPQNILMDE---FWTAKILDFGLAKLPNEDFVIDKRDKG--- 156
            + Y H +    ++H D+KP+NIL  +       KI+DFGLA+L    F  D+       
Sbjct: 136 ALAYFHSQH---VVHKDLKPENILFQDTSPHSPIKIIDFGLAEL----FKSDEHSTNAAG 188
Query: 157 ---YMAPECYKRTPISVKADVYGYGIVL 181
              YMAPE +KR  ++ K D++  G+V+
Sbjct: 189 TALYMAPEVFKRD-VTFKCDIWSAGVVM 215

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 96  IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK 155
           + LDV +G+ YL + C   ++H D+  +N L+ E    K+ DFG+ +   +D        
Sbjct: 109 MCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGT 165
Query: 156 GY----MAPECYKRTPISVKADVYGYGIVLLETI 185
            +     +PE +  +  S K+DV+ +G+++ E  
Sbjct: 166 KFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVF 199

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 76/182 (41%), Gaps = 24/182 (13%)
Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           GSL D +           + +  +  +A+G+ ++        +H D++  NIL+      
Sbjct: 267 GSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRN---YIHRDLRAANILVSASLVC 323
Query: 134 KILDFGLAKLPNEDFVIDKRDKGY----MAPECYKRTPISVKADVYGYGIVLLETICCRK 189
           KI DFGLA++  ++    +    +     APE       ++K+DV+ +GI+L+E +   +
Sbjct: 324 KIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGR 383
Query: 190 NMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKN--LENLVKVGLWCVQDEPAL 247
                 S PE I                 L RG ++ +     E L  + + C ++ P  
Sbjct: 384 IPYPGMSNPEVI---------------RALERGYRMPRPENCPEELYNIMMRCWKNRPEE 428
Query: 248 RP 249
           RP
Sbjct: 429 RP 430

>pdb|1RW8|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Atp Site Inhibitor Length = 301

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 50/110 (45%), Gaps = 22/110 (20%)
Query: 94  VRIALDVAKGILYLHDEC-----EPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF 148
           +++AL  A G+ +LH E      +P I H D+K +NIL+ +  T  I D GLA     D 
Sbjct: 104 IKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA--VRHDS 161
Query: 149 VIDKRD---------KGYMAPEC------YKRTPISVKADVYGYGIVLLE 183
             D  D         K YMAPE        K      +AD+Y  G+V  E
Sbjct: 162 ATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWE 211

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 96  IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK 155
           + LDV +G+ YL + C   ++H D+  +N L+ E    K+ DFG+ +   +D        
Sbjct: 111 MCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGT 167
Query: 156 GY----MAPECYKRTPISVKADVYGYGIVLLETI 185
            +     +PE +  +  S K+DV+ +G+++ E  
Sbjct: 168 KFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVF 201

>pdb|1PY5|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Inhibitor Length = 326

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 50/110 (45%), Gaps = 22/110 (20%)
Query: 94  VRIALDVAKGILYLHDEC-----EPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF 148
           +++AL  A G+ +LH E      +P I H D+K +NIL+ +  T  I D GLA     D 
Sbjct: 129 IKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA--VRHDS 186
Query: 149 VIDKRD---------KGYMAPEC------YKRTPISVKADVYGYGIVLLE 183
             D  D         K YMAPE        K      +AD+Y  G+V  E
Sbjct: 187 ATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWE 236

>pdb|4GV1|A Chain A, Pkb Alpha In Complex With Azd5363 Length = 340

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 11/109 (10%)
Query: 83  SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK 142
           S +R  ++   +  ALD      YLH   E  +++ D+K +N+++D+    KI DFGL K
Sbjct: 106 SEDRARFYGAEIVSALD------YLH--SEKNVVYRDLKLENLMLDKDGHIKITDFGLCK 157
Query: 143 LPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETICCR 188
              +D    K   G   Y+APE  +        D +G G+V+ E +C R
Sbjct: 158 EGIKDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGR 206

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 96  IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK 155
           + LDV +G+ YL + C   ++H D+  +N L+ E    K+ DFG+ +   +D        
Sbjct: 108 MCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGT 164
Query: 156 GY----MAPECYKRTPISVKADVYGYGIVLLETI 185
            +     +PE +  +  S K+DV+ +G+++ E  
Sbjct: 165 KFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVF 198

>pdb|1VJY|A Chain A, Crystal Structure Of A Naphthyridine Inhibitor Of Human Tgf- Beta Type I Receptor Length = 303

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 50/110 (45%), Gaps = 22/110 (20%)
Query: 94  VRIALDVAKGILYLHDEC-----EPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF 148
           +++AL  A G+ +LH E      +P I H D+K +NIL+ +  T  I D GLA     D 
Sbjct: 103 IKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA--VRHDS 160
Query: 149 VIDKRD---------KGYMAPEC------YKRTPISVKADVYGYGIVLLE 183
             D  D         K YMAPE        K      +AD+Y  G+V  E
Sbjct: 161 ATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWE 210

>pdb|2WOT|A Chain A, Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl)-3- Pyridyl)oxy)-N-(3,4,5-Trimethoxyphenyl)pyridin-2-Amine Length = 306

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 50/110 (45%), Gaps = 22/110 (20%)
Query: 94  VRIALDVAKGILYLHDEC-----EPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF 148
           +++AL  A G+ +LH E      +P I H D+K +NIL+ +  T  I D GLA     D 
Sbjct: 106 IKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA--VRHDS 163
Query: 149 VIDKRD---------KGYMAPEC------YKRTPISVKADVYGYGIVLLE 183
             D  D         K YMAPE        K      +AD+Y  G+V  E
Sbjct: 164 ATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWE 213

>pdb|3NYN|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6 In Complex With Sangivamycin Length = 576

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR 153
           V  A ++  G+  LH E    I++ D+KP+NIL+D+    +I D GLA    E   I  R
Sbjct: 289 VFYAAEICCGLEDLHRE---RIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKGR 345
Query: 154 --DKGYMAPECYKRTPISVKADVYGYGIVLLETI 185
               GYMAPE  K    +   D +  G +L E I
Sbjct: 346 VGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMI 379

>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase I G Length = 304

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 11/121 (9%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALD-VAKGILYLHDECEPPILHCDIKPQNILM-- 127
           V  G L D I    ER  Y  +   + +  V   + YLH   E  I+H D+KP+N+L   
Sbjct: 88  VSGGELFDRIL---ERGVYTEKDASLVIQQVLSAVKYLH---ENGIVHRDLKPENLLYLT 141
Query: 128 -DEFWTAKILDFGLAKLPNEDFVIDK-RDKGYMAPECYKRTPISVKADVYGYGIVLLETI 185
            +E     I DFGL+K+     +       GY+APE   + P S   D +  G++    +
Sbjct: 142 PEENSKIMITDFGLSKMEQNGIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILL 201
Query: 186 C 186
           C
Sbjct: 202 C 202

>pdb|3OCB|A Chain A, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor Length = 341

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 11/109 (10%)
Query: 83  SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK 142
           S +R  ++   +  ALD      YLH   E  +++ D+K +N+++D+    KI DFGL K
Sbjct: 107 SEDRARFYGAEIVSALD------YLH--SEKNVVYRDLKLENLMLDKDGHIKITDFGLCK 158
Query: 143 LPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETICCR 188
              +D    K   G   Y+APE  +        D +G G+V+ E +C R
Sbjct: 159 EGIKDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGR 207

>pdb|2ACX|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 6 Bound To Amppnp Length = 576

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR 153
           V  A ++  G+  LH E    I++ D+KP+NIL+D+    +I D GLA    E   I  R
Sbjct: 289 VFYAAEICCGLEDLHRE---RIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKGR 345
Query: 154 --DKGYMAPECYKRTPISVKADVYGYGIVLLETI 185
               GYMAPE  K    +   D +  G +L E I
Sbjct: 346 VGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMI 379

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 96  IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK 155
           + LDV +G+ YL + C   ++H D+  +N L+ E    K+ DFG+ +   +D        
Sbjct: 106 MCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGT 162
Query: 156 GY----MAPECYKRTPISVKADVYGYGIVLLETI 185
            +     +PE +  +  S K+DV+ +G+++ E  
Sbjct: 163 KFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVF 196

>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +  GSL D +     R       V +A  VA G+ Y+        +H D++  NIL+   
Sbjct: 85  MNKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMN---YIHRDLRSANILVGNG 141
Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKGY----MAPECYKRTPISVKADVYGYGIVLLETIC 186
              KI DFGLA+L  ++    ++   +     APE       ++K+DV+ +GI+L E + 
Sbjct: 142 LICKIADFGLARLIEDNEXTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVT 201

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 10/120 (8%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRV-RIALDVAKGILYLHDECEPPILHCDIKPQNILMDE 129
           + +G L+D  +   +R  +  + +  + LDV +G+ YL + C   ++H D+  +N L+ E
Sbjct: 104 MEHGCLSD--YLRTQRGLFAAETLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGE 158
Query: 130 FWTAKILDFGLAKLPNEDFVIDKRDKGY----MAPECYKRTPISVKADVYGYGIVLLETI 185
               K+ DFG+ +   +D         +     +PE +  +  S K+DV+ +G+++ E  
Sbjct: 159 NQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVF 218

>pdb|3VUM|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M7 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAP 160
           GI +LH      I+H D+KP NI++    T KILDFGLA+     F++      + Y AP
Sbjct: 138 GIKHLHSAG---IIHRDLKPSNIVVKSDATLKILDFGLARTAGTSFMMTPYVVTRYYRAP 194
Query: 161 ECYKRTPISVKADVYGYGIVLLETI 185
           E           D++  G+++ E I
Sbjct: 195 EVILGMGYKENVDIWSVGVIMGEMI 219

>pdb|3CQU|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate Peptide And Inhibitor Length = 342

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 11/109 (10%)
Query: 83  SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK 142
           S +R  ++   +  ALD      YLH   E  +++ D+K +N+++D+    KI DFGL K
Sbjct: 108 SEDRARFYGAEIVSALD------YLH--SEKNVVYRDLKLENLMLDKDGHIKITDFGLCK 159
Query: 143 LPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETICCR 188
              +D    K   G   Y+APE  +        D +G G+V+ E +C R
Sbjct: 160 EGIKDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGR 208

>pdb|2DYL|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein Kinase Kinase 7 Activated Mutant (S287d, T291d) Length = 318

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 9/96 (9%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRD 154
           ++ + + K + YL ++    ++H D+KP NIL+DE    K+ DFG++    +D   D+  
Sbjct: 128 KMTVAIVKALYYLKEKHG--VIHRDVKPSNILLDERGQIKLCDFGISGRLVDDKAKDRSA 185
Query: 155 --KGYMAPECYK-----RTPISVKADVYGYGIVLLE 183
               YMAPE        +    ++ADV+  GI L+E
Sbjct: 186 GCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVE 221

>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk Length = 476

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           V  G L D I C   R      R R+   +  G+ Y H      ++H D+KP+N+L+D  
Sbjct: 98  VSGGELFDYI-CKNGRLDEKESR-RLFQQILSGVDYCHRHM---VVHRDLKPENVLLDAH 152
Query: 131 WTAKILDFGLAKLPNEDFVIDKR--DKGYMAPECYK-RTPISVKADVYGYGIVLLETIC 186
             AKI DFGL+ + ++   +        Y APE    R     + D++  G++L   +C
Sbjct: 153 MNAKIADFGLSNMMSDGEFLRXSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLC 211

>pdb|1B6C|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Type I Tgf-Beta Receptor In Complex With Fkbp12 Length = 342

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 50/110 (45%), Gaps = 22/110 (20%)
Query: 94  VRIALDVAKGILYLHDEC-----EPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF 148
           +++AL  A G+ +LH E      +P I H D+K +NIL+ +  T  I D GLA     D 
Sbjct: 142 IKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA--VRHDS 199
Query: 149 VIDKRD---------KGYMAPEC------YKRTPISVKADVYGYGIVLLE 183
             D  D         K YMAPE        K      +AD+Y  G+V  E
Sbjct: 200 ATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWE 249

>pdb|3VUL|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAP 160
           GI +LH      I+H D+KP NI++    T KILDFGLA+     F++      + Y AP
Sbjct: 138 GIKHLHSAG---IIHRDLKPSNIVVKSDATLKILDFGLARTAGTSFMMTPYVVTRYYRAP 194
Query: 161 ECYKRTPISVKADVYGYGIVLLETI 185
           E           D++  G+++ E I
Sbjct: 195 EVILGMGYKENVDIWSVGVIMGEMI 219

>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 90  WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT-----AKILDFGLAKLP 144
           W+ ++R+ LD+A GI Y+ ++  PPI+H D++  NI +          AK+ DF L++  
Sbjct: 121 WSVKLRLMLDIALGIEYMQNQ-NPPIVHRDLRSPNIFLQSLDENAPVCAKVADFSLSQQS 179
Query: 145 NEDFVIDKRDKGYMAPECY--KRTPISVKADVYGYGIVL 181
                    +  +MAPE    +    + KAD Y + ++L
Sbjct: 180 VHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMIL 218

>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human 5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant (T172d) Length = 276

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 8/119 (6%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           V  G L D I C   R      R R+   +   + Y H      ++H D+KP+N+L+D  
Sbjct: 93  VSGGELFDYI-CKHGRVEEMEAR-RLFQQILSAVDYCHRHM---VVHRDLKPENVLLDAH 147
Query: 131 WTAKILDFGLAKLPNE-DFVIDK-RDKGYMAPECYK-RTPISVKADVYGYGIVLLETIC 186
             AKI DFGL+ + ++ +F+ D      Y APE    R     + D++  G++L   +C
Sbjct: 148 MNAKIADFGLSNMMSDGEFLRDSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLC 206

>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           GSL D +    ER  +  + ++    + KG+ YL  +     +H D+  +NIL++     
Sbjct: 98  GSLRDYLQKHKERIDHI-KLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRV 153
Query: 134 KILDFGLAK-LPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICC 187
           KI DFGL K LP +      ++ G     + APE    +  SV +DV+ +G+VL E    
Sbjct: 154 KIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTY 213
Query: 188 RKNMEIDASKPEEII 202
              +E   S P E +
Sbjct: 214 ---IEKSKSPPAEFM 225

>pdb|3P1A|A Chain A, Structure Of Human Membrane-Associated Tyrosine- And Threonine- Specific Cdc2-Inhibitory Kinase Myt1 (Pkmyt1) Length = 311

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 99  DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFG-LAKLPNEDFV-IDKRDKG 156
           D    + +LH +    ++H D+KP NI +      K+ DFG L +L       + + D  
Sbjct: 165 DTLLALAHLHSQG---LVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQEGDPR 221
Query: 157 YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEI 193
           YMAPE  + +     ADV+  G+ +LE  C   NME+
Sbjct: 222 YMAPELLQGS-YGTAADVFSLGLTILEVAC---NMEL 254

>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain Length = 306

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGL-AKLPNEDFVIDKRDKG-- 156
           + KG+ Y+H +    ++H D+KP NI + +    KI DFGL   L N+      R KG  
Sbjct: 145 ITKGVDYIHSK---KLIHRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRT--RSKGTL 199
Query: 157 -YMAPECYKRTPISVKADVYGYGIVLLETI 185
            YM+PE         + D+Y  G++L E +
Sbjct: 200 RYMSPEQISSQDYGKEVDLYALGLILAELL 229

>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant Length = 311

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 75  SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAK 134
           +L DI+       P   + + +  D  + + + H      I+H D+KP NI++      K
Sbjct: 102 TLRDIVHTEGPMTP--KRAIEVIADACQALNFSHQNG---IIHRDVKPANIMISATNAVK 156
Query: 135 ILDFGLAK--------LPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC 186
           ++DFG+A+        +     VI      Y++PE  +   +  ++DVY  G VL E + 
Sbjct: 157 VMDFGIARAIADSGNSVTQTAAVIGTAQ--YLSPEQARGDSVDARSDVYSLGCVLYEVLT 214

>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycobacterium Tuberculosis Pknb. Length = 311

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 75  SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAK 134
           +L DI+       P   + + +  D  + + + H      I+H D+KP NI++      K
Sbjct: 102 TLRDIVHTEGPMTP--KRAIEVIADACQALNFSHQNG---IIHRDVKPANIMISATNAVK 156
Query: 135 ILDFGLAK--------LPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC 186
           ++DFG+A+        +     VI      Y++PE  +   +  ++DVY  G VL E + 
Sbjct: 157 VMDFGIARAIADSGNSVTQTAAVIGTAQ--YLSPEQARGDSVDARSDVYSLGCVLYEVLT 214

>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb Mutant Kinase Domain In Complex With Kt5720 Length = 311

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 75  SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAK 134
           +L DI+       P   + + +  D  + + + H      I+H D+KP NIL+      K
Sbjct: 102 TLRDIVHTEGPMTP--KRAIEVIADACQALNFSHQNG---IIHRDVKPANILISATNAVK 156
Query: 135 ILDFGLAK--------LPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC 186
           ++DFG+A+        +     VI      Y++PE  +   +  ++DVY  G VL E + 
Sbjct: 157 VVDFGIARAIADSGNSVXQTAAVIGTAQ--YLSPEQARGDSVDARSDVYSLGCVLYEVLT 214

>pdb|3H9R|A Chain A, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 330

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 24/111 (21%)
Query: 94  VRIALDVAKGILYLHDEC-----EPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF 148
           +RI L +A G+ +LH E      +P I H D+K +NIL+ +     I D GLA + ++  
Sbjct: 137 LRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQS- 195
Query: 149 VIDKRDKG---------YMAPECYKRTPISV-------KADVYGYGIVLLE 183
             ++ D G         YMAPE    T I V       + D++ +G+VL E
Sbjct: 196 -TNQLDVGNNPRVGTKRYMAPEVLDET-IQVDCFDSYKRVDIWAFGLVLWE 244

>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium Tuberculosis Length = 299

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 75  SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAK 134
           +L DI+       P   + + +  D  + + + H      I+H D+KP NI++      K
Sbjct: 119 TLRDIVHTEGPMTP--KRAIEVIADACQALNFSHQNG---IIHRDVKPANIMISATNAVK 173
Query: 135 ILDFGLAK--------LPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC 186
           ++DFG+A+        +     VI      Y++PE  +   +  ++DVY  G VL E + 
Sbjct: 174 VMDFGIARAIADSGNSVTQTAAVIGTAQ--YLSPEQARGDSVDARSDVYSLGCVLYEVLT 231

>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 11/119 (9%)
Query: 71  VRNGSLTDIIFCSAERNPYWN--QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD 128
           +  G L D  F   E   Y    Q V +A  +A G+ Y+        +H D++  NIL+ 
Sbjct: 94  MSKGCLLD--FLKGEMGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVG 148
Query: 129 EFWTAKILDFGLAKLPNEDFVIDKRDKGY----MAPECYKRTPISVKADVYGYGIVLLE 183
           E    K+ DFGLA+L  ++    ++   +     APE       ++K+DV+ +GI+L E
Sbjct: 149 ENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE 207

>pdb|1MRV|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain Length = 339

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 9/120 (7%)
Query: 73  NGSLTDIIFCSAERNPYWNQRVRI-ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 131
           NG   ++ F  +    +  +R R    ++   + YLH      +++ DIK +N+++D+  
Sbjct: 91  NGG--ELFFHLSRERVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDG 145
Query: 132 TAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETICCR 188
             KI DFGL K    D    K   G   Y+APE  +        D +G G+V+ E +C R
Sbjct: 146 HIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGR 205

>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant (Crystal Form 1) Length = 311

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 75  SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAK 134
           +L DI+       P   + + +  D  + + + H      I+H D+KP NI++      K
Sbjct: 102 TLRDIVHTEGPMTP--KRAIEVIADACQALNFSHQNG---IIHRDVKPANIMISATNAVK 156
Query: 135 ILDFGLAK--------LPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC 186
           ++DFG+A+        +     VI      Y++PE  +   +  ++DVY  G VL E + 
Sbjct: 157 VMDFGIARAIADSGNSVTQTAAVIGTAQ--YLSPEQARGDSVDARSDVYSLGCVLYEVLT 214

>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 11/119 (9%)
Query: 71  VRNGSLTDIIFCSAERNPYWN--QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD 128
           +  G L D  F   E   Y    Q V +A  +A G+ Y+        +H D++  NIL+ 
Sbjct: 94  MSKGCLLD--FLKGEMGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVG 148
Query: 129 EFWTAKILDFGLAKLPNEDFVIDKRDKGY----MAPECYKRTPISVKADVYGYGIVLLE 183
           E    K+ DFGLA+L  ++    ++   +     APE       ++K+DV+ +GI+L E
Sbjct: 149 ENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE 207

>pdb|1GZK|A Chain A, Molecular Mechanism For The Regulation Of Protein Kinase B Akt By Hydrophobic Motif Phosphorylation Length = 315

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 9/120 (7%)
Query: 73  NGSLTDIIFCSAERNPYWNQRVRI-ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 131
           NG   ++ F  +    +  +R R    ++   + YLH      +++ DIK +N+++D+  
Sbjct: 88  NGG--ELFFHLSRERVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDG 142
Query: 132 TAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETICCR 188
             KI DFGL K    D    K   G   Y+APE  +        D +G G+V+ E +C R
Sbjct: 143 HIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGR 202

>pdb|1GZN|A Chain A, Structure Of Pkb Kinase Domain Length = 335

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 9/120 (7%)
Query: 73  NGSLTDIIFCSAERNPYWNQRVRI-ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 131
           NG   ++ F  +    +  +R R    ++   + YLH      +++ DIK +N+++D+  
Sbjct: 88  NGG--ELFFHLSRERVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDG 142
Query: 132 TAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETICCR 188
             KI DFGL K    D    K   G   Y+APE  +        D +G G+V+ E +C R
Sbjct: 143 HIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGR 202

>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071 Length = 360

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
           Q V  A +++ G+ +LH      I++ D+K  N+++D     KI DFG+ K    D V  
Sbjct: 121 QAVFYAAEISIGLFFLHKRG---IIYRDLKLDNVMLDSEGHIKIADFGMCKEHMMDGVTT 177
Query: 152 KRDKG---YMAPECYKRTPISVKADVYGYGIVLLETICCR 188
           +   G   Y+APE     P     D + YG++L E +  +
Sbjct: 178 REFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQ 217

>pdb|3ELJ|A Chain A, Jnk1 Complexed With A Bis-Anilino-Pyrrolopyrimidine Inhibitor Length = 369

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAP 160
           GI +LH      I+H D+KP NI++    T KILDFGLA+     F++      + Y AP
Sbjct: 143 GIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAP 199
Query: 161 ECYKRTPISVKADVYGYGIVLLETICCR 188
           E           D++  G ++ E +C +
Sbjct: 200 EVILGMGYKENVDLWSVGCIMGEMVCHK 227

>pdb|1O6L|A Chain A, Crystal Structure Of An Activated Akt/protein Kinase B (pkb-pif Chimera) Ternary Complex With Amp-pnp And Gsk3 Peptide Length = 337

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 9/120 (7%)
Query: 73  NGSLTDIIFCSAERNPYWNQRVRI-ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 131
           NG   ++ F  +    +  +R R    ++   + YLH      +++ DIK +N+++D+  
Sbjct: 88  NGG--ELFFHLSRERVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDG 142
Query: 132 TAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETICCR 188
             KI DFGL K    D    K   G   Y+APE  +        D +G G+V+ E +C R
Sbjct: 143 HIKITDFGLCKEGISDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGR 202

>pdb|1KOB|A Chain A, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein Kinase Domain Length = 387

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 7/83 (8%)
Query: 102 KGILYLHDECEPPILHCDIKPQNILMD--EFWTAKILDFGLA-KL-PNEDFVIDKRDKGY 157
           +G+ ++H+     I+H DIKP+NI+ +  +  + KI+DFGLA KL P+E   +      +
Sbjct: 160 EGLKHMHEHS---IVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEF 216
Query: 158 MAPECYKRTPISVKADVYGYGIV 180
            APE   R P+    D++  G++
Sbjct: 217 AAPEIVDREPVGFYTDMWAIGVL 239

>pdb|1O6K|A Chain A, Structure Of Activated Form Of Pkb Kinase Domain S474d With Gsk3 Peptide And Amp-Pnp Length = 336

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 9/120 (7%)
Query: 73  NGSLTDIIFCSAERNPYWNQRVRI-ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 131
           NG   ++ F  +    +  +R R    ++   + YLH      +++ DIK +N+++D+  
Sbjct: 88  NGG--ELFFHLSRERVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDG 142
Query: 132 TAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETICCR 188
             KI DFGL K    D    K   G   Y+APE  +        D +G G+V+ E +C R
Sbjct: 143 HIKITDFGLCKEGISDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGR 202

>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP Length = 311

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 75  SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAK 134
           +L DI+       P   + + +  D  + + + H      I+H D+KP NI++      K
Sbjct: 102 TLRDIVHTEGPMTP--KRAIEVIADACQALNFSHQNG---IIHRDVKPANIMISATNAVK 156
Query: 135 ILDFGLAK--------LPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC 186
           ++DFG+A+        +     VI      Y++PE  +   +  ++DVY  G VL E + 
Sbjct: 157 VMDFGIARAIADSGNSVTQTAAVIGTAQ--YLSPEQARGDSVDARSDVYSLGCVLYEVLT 214

>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 97  ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-LPNEDFVIDKRDK 155
           A +V   + YLH +    I++ D+KP+NIL+D+    KI DFG AK +P+  + +     
Sbjct: 112 AAEVCLALEYLHSKD---IIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYXLCGT-P 167
Query: 156 GYMAPECYKRTPISVKADVYGYGIVLLETIC 186
            Y+APE     P +   D + +GI++ E + 
Sbjct: 168 DYIAPEVVSTKPYNKSIDWWSFGILIYEMLA 198

>pdb|4DYM|A Chain A, Crystal Structure Of The Acvr1 Kinase Domain In Complex With The Imidazo[1,2-B]pyridazine Inhibitor K00135 Length = 301

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 24/111 (21%)
Query: 94  VRIALDVAKGILYLHDEC-----EPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF 148
           +RI L +A G+ +LH E      +P I H D+K +NIL+ +     I D GLA + ++  
Sbjct: 108 LRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQS- 166
Query: 149 VIDKRDKG---------YMAPECYKRTPISV-------KADVYGYGIVLLE 183
             ++ D G         YMAPE    T I V       + D++ +G+VL E
Sbjct: 167 -TNQLDVGNNPRVGTKRYMAPEVLDET-IQVDCFDSYKRVDIWAFGLVLWE 215

>pdb|3E87|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex With Atp- Competitive Inhibitors Length = 335

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 9/120 (7%)
Query: 73  NGSLTDIIFCSAERNPYWNQRVRI-ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 131
           NG   ++ F  +    +  +R R    ++   + YLH      +++ DIK +N+++D+  
Sbjct: 88  NGG--ELFFHLSRERVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDG 142
Query: 132 TAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETICCR 188
             KI DFGL K    D    K   G   Y+APE  +        D +G G+V+ E +C R
Sbjct: 143 HIKITDFGLCKEGISDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGR 202

>pdb|3MTF|A Chain A, Crystal Structure Of The Acvr1 Kinase In Complex With A 2- Aminopyridine Inhibitor Length = 301

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 24/111 (21%)
Query: 94  VRIALDVAKGILYLHDEC-----EPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF 148
           +RI L +A G+ +LH E      +P I H D+K +NIL+ +     I D GLA + ++  
Sbjct: 108 LRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQS- 166
Query: 149 VIDKRDKG---------YMAPECYKRTPISV-------KADVYGYGIVLLE 183
             ++ D G         YMAPE    T I V       + D++ +G+VL E
Sbjct: 167 -TNQLDVGNNPRVGTKRYMAPEVLDET-IQVDCFDSYKRVDIWAFGLVLWE 215

>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine Inhibitor Length = 321

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 98  LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG- 156
           + +AKG++YL    E  ++H D+  +N+L+      KI DFGLA+L   D      D G 
Sbjct: 147 VQIAKGMMYLE---ERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGK 203
Query: 157 ----YMAPECYKRTPISVKADVYGYGIVLLETIC 186
               +MA EC      + ++DV+ YG+ + E + 
Sbjct: 204 MPIKWMALECIHYRKFTHQSDVWSYGVTIWELMT 237

>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           GSL D +    ER  +  + ++    + KG+ YL  +     +H D+  +NIL++     
Sbjct: 116 GSLRDYLQKHKERIDHI-KLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRV 171
Query: 134 KILDFGLAK-LPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICC 187
           KI DFGL K LP +      ++ G     + APE    +  SV +DV+ +G+VL E    
Sbjct: 172 KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTY 231
Query: 188 RKNMEIDASKPEEII 202
              +E   S P E +
Sbjct: 232 ---IEKSKSPPAEFM 243

>pdb|2JDO|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 342

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 9/120 (7%)
Query: 73  NGSLTDIIFCSAERNPYWNQRVRI-ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 131
           NG   ++ F  +    +  +R R    ++   + YLH      +++ DIK +N+++D+  
Sbjct: 93  NGG--ELFFHLSRERVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDG 147
Query: 132 TAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETICCR 188
             KI DFGL K    D    K   G   Y+APE  +        D +G G+V+ E +C R
Sbjct: 148 HIKITDFGLCKEGISDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGR 207

>pdb|3PZE|A Chain A, Jnk1 In Complex With Inhibitor Length = 358

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAP 160
           GI +LH      I+H D+KP NI++    T KILDFGLA+     F++      + Y AP
Sbjct: 132 GIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAP 188
Query: 161 ECYKRTPISVKADVYGYGIVLLETICCR 188
           E           D++  G ++ E +C +
Sbjct: 189 EVILGMGYKENVDLWSVGCIMGEMVCHK 216

>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With Lapatinib Length = 328

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 98  LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG- 156
           + +AKG++YL    E  ++H D+  +N+L+      KI DFGLA+L   D      D G 
Sbjct: 124 VQIAKGMMYLE---ERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGK 180
Query: 157 ----YMAPECYKRTPISVKADVYGYGIVLLETIC 186
               +MA EC      + ++DV+ YG+ + E + 
Sbjct: 181 MPIKWMALECIHYRKFTHQSDVWSYGVTIWELMT 214

>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           GSL D +    ER  +  + ++    + KG+ YL  +     +H D+  +NIL++     
Sbjct: 116 GSLRDYLQKHKERIDHI-KLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRV 171
Query: 134 KILDFGLAK-LPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICC 187
           KI DFGL K LP +      ++ G     + APE    +  SV +DV+ +G+VL E    
Sbjct: 172 KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTY 231
Query: 188 RKNMEIDASKPEEII 202
              +E   S P E +
Sbjct: 232 ---IEKSKSPPAEFM 243

>pdb|1RJB|A Chain A, Crystal Structure Of Flt3 Length = 344

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 8/100 (8%)
Query: 96  IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK--LPNEDFVIDKR 153
            A  VAKG+ +L  +     +H D+  +N+L+      KI DFGLA+  + + ++V+   
Sbjct: 177 FAYQVAKGMEFLEFK---SCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGN 233
Query: 154 DK---GYMAPECYKRTPISVKADVYGYGIVLLETICCRKN 190
            +    +MAPE       ++K+DV+ YGI+L E      N
Sbjct: 234 ARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVN 273

>pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 7/120 (5%)
Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           GSL D +           + +  +  +A+G+ Y+  +     +H D++  N+L+ E    
Sbjct: 93  GSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKN---YIHRDLRAANVLVSESLMC 149
Query: 134 KILDFGLAKLPNEDFVIDKRDKGY----MAPECYKRTPISVKADVYGYGIVLLETICCRK 189
           KI DFGLA++  ++    +    +     APE       ++K+DV+ +GI+L E +   K
Sbjct: 150 KIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGCFTIKSDVWSFGILLYEIVTYGK 209

>pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone Inhibitor Length = 335

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 26/164 (15%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK--LPNEDFVID 151
           +  +  VA+G+ +L        +H D+  +N+L+     AKI DFGLA+  + + ++++ 
Sbjct: 169 LHFSSQVAQGMAFL---ASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVK 225
Query: 152 KRDK---GYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVY 208
              +    +MAPE       +V++DV+ YGI+L E      N       P   IL     
Sbjct: 226 GNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLN-------PYPGIL----- 273
Query: 209 KCFINRELNKLVR-GTKVDKKNL--ENLVKVGLWCVQDEPALRP 249
              +N +  KLV+ G ++ +     +N+  +   C   EP  RP
Sbjct: 274 ---VNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRP 314

>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           GSL D +    ER  +  + ++    + KG+ YL  +     +H D+  +NIL++     
Sbjct: 98  GSLRDYLQKHKERIDHI-KLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRV 153
Query: 134 KILDFGLAK-LPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICC 187
           KI DFGL K LP +      ++ G     + APE    +  SV +DV+ +G+VL E    
Sbjct: 154 KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTY 213
Query: 188 RKNMEIDASKPEEII 202
              +E   S P E +
Sbjct: 214 ---IEKSKSPPAEFM 225

>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           GSL D +    ER  +  + ++    + KG+ YL  +     +H D+  +NIL++     
Sbjct: 98  GSLRDYLQKHKERIDHI-KLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRV 153
Query: 134 KILDFGLAK-LPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICC 187
           KI DFGL K LP +      ++ G     + APE    +  SV +DV+ +G+VL E    
Sbjct: 154 KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTY 213
Query: 188 RKNMEIDASKPEEII 202
              +E   S P E +
Sbjct: 214 ---IEKSKSPPAEFM 225

>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase 1d Length = 334

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNIL---MDEFWTAKILDFGLAKLPNEDFVI 150
           +R  LD    + YLH      I+H D+KP+N+L    DE     I DFGL+K+  +  V+
Sbjct: 126 IRQVLD---AVYYLH---RMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVM 179
Query: 151 DKR--DKGYMAPECYKRTPISVKADVYGYGIVLLETIC 186
                  GY+APE   + P S   D +  G++    +C
Sbjct: 180 STACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLC 217

>pdb|3HNG|A Chain A, Crystal Structure Of Vegfr1 In Complex With N-(4-chlorophenyl)-2- ((pyridin-4-ylmethyl)amino)benzamide Length = 360

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK--LPNEDFVID 151
           +  +  VA+G+ +L        +H D+  +NIL+ E    KI DFGLA+    N D+V  
Sbjct: 202 ISYSFQVARGMEFLSSR---KCIHRDLAARNILLSENNVVKICDFGLARDIYKNPDYVRK 258
Query: 152 KRDK---GYMAPECYKRTPISVKADVYGYGIVLLE 183
              +    +MAPE       S K+DV+ YG++L E
Sbjct: 259 GDTRLPLKWMAPESIFDKIYSTKSDVWSYGVLLWE 293

>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           GSL D +    ER  +  + ++    + KG+ YL  +     +H D+  +NIL++     
Sbjct: 97  GSLRDYLQKHKERIDHI-KLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRV 152
Query: 134 KILDFGLAK-LPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICC 187
           KI DFGL K LP +      ++ G     + APE    +  SV +DV+ +G+VL E    
Sbjct: 153 KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTY 212
Query: 188 RKNMEIDASKPEEII 202
              +E   S P E +
Sbjct: 213 ---IEKSKSPPAEFM 224

>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           GSL D +    ER  +  + ++    + KG+ YL  +     +H D+  +NIL++     
Sbjct: 101 GSLRDYLQKHKERIDHI-KLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRV 156
Query: 134 KILDFGLAK-LPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICC 187
           KI DFGL K LP +      ++ G     + APE    +  SV +DV+ +G+VL E    
Sbjct: 157 KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTY 216
Query: 188 RKNMEIDASKPEEII 202
              +E   S P E +
Sbjct: 217 ---IEKSKSPPAEFM 228

>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           GSL D +    ER  +  + ++    + KG+ YL  +     +H D+  +NIL++     
Sbjct: 96  GSLRDYLQKHKERIDHI-KLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRV 151
Query: 134 KILDFGLAK-LPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICC 187
           KI DFGL K LP +      ++ G     + APE    +  SV +DV+ +G+VL E    
Sbjct: 152 KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTY 211
Query: 188 RKNMEIDASKPEEII 202
              +E   S P E +
Sbjct: 212 ---IEKSKSPPAEFM 223

>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           GSL D +    ER  +  + ++    + KG+ YL  +     +H D+  +NIL++     
Sbjct: 103 GSLRDYLQKHKERIDHI-KLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRV 158
Query: 134 KILDFGLAK-LPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICC 187
           KI DFGL K LP +      ++ G     + APE    +  SV +DV+ +G+VL E    
Sbjct: 159 KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTY 218
Query: 188 RKNMEIDASKPEEII 202
              +E   S P E +
Sbjct: 219 ---IEKSKSPPAEFM 230

>pdb|3MFR|A Chain A, Cask-4m Cam Kinase Domain, Native Length = 351

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKILDFGLAKLPNEDFVIDKRDKG 156
           + + + Y HD     I+H D+KP+N+L+   +     K+ DFG+A    E  ++     G
Sbjct: 139 ILEALRYCHDNN---IIHRDVKPENVLLASKENSAPVKLGDFGVAIQLGESGLVAGGRVG 195
Query: 157 ---YMAPECYKRTPISVKADVYGYGIVLL 182
              +MAPE  KR P     DV+G G++L 
Sbjct: 196 TPHFMAPEVVKREPYGKPVDVWGCGVILF 224

>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase Domain Length = 317

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 26/164 (15%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK--LPNEDFVID 151
           +  +  VA+G+ +L        +H D+  +N+L+     AKI DFGLA+  + + ++++ 
Sbjct: 155 LHFSSQVAQGMAFL---ASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVK 211
Query: 152 KRDK---GYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVY 208
              +    +MAPE       +V++DV+ YGI+L E      N       P   IL     
Sbjct: 212 GNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLN-------PYPGIL----- 259
Query: 209 KCFINRELNKLVR-GTKVDKKNL--ENLVKVGLWCVQDEPALRP 249
              +N +  KLV+ G ++ +     +N+  +   C   EP  RP
Sbjct: 260 ---VNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRP 300

>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           GSL D +    ER  +  + ++    + KG+ YL  +     +H D+  +NIL++     
Sbjct: 105 GSLRDYLQKHKERIDHI-KLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRV 160
Query: 134 KILDFGLAK-LPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICC 187
           KI DFGL K LP +      ++ G     + APE    +  SV +DV+ +G+VL E    
Sbjct: 161 KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTY 220
Query: 188 RKNMEIDASKPEEII 202
              +E   S P E +
Sbjct: 221 ---IEKSKSPPAEFM 232

>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           GSL D +    ER  +  + ++    + KG+ YL  +     +H D+  +NIL++     
Sbjct: 102 GSLRDYLQKHKERIDHI-KLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRV 157
Query: 134 KILDFGLAK-LPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICC 187
           KI DFGL K LP +      ++ G     + APE    +  SV +DV+ +G+VL E    
Sbjct: 158 KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTY 217
Query: 188 RKNMEIDASKPEEII 202
              +E   S P E +
Sbjct: 218 ---IEKSKSPPAEFM 229

>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           GSL D +    ER  +  + ++    + KG+ YL  +     +H D+  +NIL++     
Sbjct: 104 GSLRDYLQKHKERIDHI-KLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRV 159
Query: 134 KILDFGLAK-LPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICC 187
           KI DFGL K LP +      ++ G     + APE    +  SV +DV+ +G+VL E    
Sbjct: 160 KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTY 219
Query: 188 RKNMEIDASKPEEII 202
              +E   S P E +
Sbjct: 220 ---IEKSKSPPAEFM 231

>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           GSL D +    ER  +  + ++    + KG+ YL  +     +H D+  +NIL++     
Sbjct: 129 GSLRDYLQKHKERIDHI-KLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRV 184
Query: 134 KILDFGLAK-LPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICC 187
           KI DFGL K LP +      ++ G     + APE    +  SV +DV+ +G+VL E    
Sbjct: 185 KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTY 244
Query: 188 RKNMEIDASKPEEII 202
              +E   S P E +
Sbjct: 245 ---IEKSKSPPAEFM 256

>pdb|4FR4|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase 32a (Yank1) Length = 384

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 115 ILHCDIKPQNILMDEFWTAKILDFGLAK-LPNEDFVID-KRDKGYMAPECY---KRTPIS 169
           I+H D+KP NIL+DE     I DF +A  LP E  +      K YMAPE +   K    S
Sbjct: 136 IIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQITTMAGTKPYMAPEMFSSRKGAGYS 195
Query: 170 VKADVYGYGIVLLETICCRKNMEIDAS-KPEEIILT 204
              D +  G+   E +  R+   I +S   +EI+ T
Sbjct: 196 FAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIVHT 231

>pdb|3LCO|A Chain A, Inhibitor Bound To A Dfg-Out Structure Of The Kinase Domain Of Csf-1r Length = 324

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 26/164 (15%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK--LPNEDFVID 151
           +  +  VA+G+ +L  +     +H D+  +N+L+     AKI DFGLA+  + + ++++ 
Sbjct: 161 LHFSSQVAQGMAFLASKN---CIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVK 217
Query: 152 KRDK---GYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVY 208
              +    +MAPE       +V++DV+ YGI+L E      N       P   IL     
Sbjct: 218 GNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLN-------PYPGIL----- 265
Query: 209 KCFINRELNKLVR-GTKVDKKNL--ENLVKVGLWCVQDEPALRP 249
              +N +  KLV+ G ++ +     +N+  +   C   EP  RP
Sbjct: 266 ---VNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRP 306

>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain Of Csf-1r Length = 329

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 26/164 (15%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK--LPNEDFVID 151
           +  +  VA+G+ +L        +H D+  +N+L+     AKI DFGLA+  + + ++++ 
Sbjct: 163 LHFSSQVAQGMAFL---ASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVK 219
Query: 152 KRDK---GYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVY 208
              +    +MAPE       +V++DV+ YGI+L E      N       P   IL     
Sbjct: 220 GNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLN-------PYPGIL----- 267
Query: 209 KCFINRELNKLVR-GTKVDKKNL--ENLVKVGLWCVQDEPALRP 249
              +N +  KLV+ G ++ +     +N+  +   C   EP  RP
Sbjct: 268 ---VNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRP 308

>pdb|3T8O|A Chain A, Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolution Length = 543

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 8/134 (5%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQ--RVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD 128
           +  G +   I+   E NP + +   +     +  G+ +LH      I++ D+KP+N+L+D
Sbjct: 267 MNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRN---IIYRDLKPENVLLD 323
Query: 129 EFWTAKILDFGLA---KLPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETI 185
           +    +I D GLA   K             G+MAPE           D +  G+ L E I
Sbjct: 324 DDGNVRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMI 383
Query: 186 CCRKNMEIDASKPE 199
             R        K E
Sbjct: 384 AARGPFRARGEKVE 397

>pdb|3C4X|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.9a Length = 543

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 8/134 (5%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQ--RVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD 128
           +  G +   I+   E NP + +   +     +  G+ +LH      I++ D+KP+N+L+D
Sbjct: 267 MNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRN---IIYRDLKPENVLLD 323
Query: 129 EFWTAKILDFGLA---KLPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETI 185
           +    +I D GLA   K             G+MAPE           D +  G+ L E I
Sbjct: 324 DDGNVRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMI 383
Query: 186 CCRKNMEIDASKPE 199
             R        K E
Sbjct: 384 AARGPFRARGEKVE 397

>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic Acid ((s)-1,2,2-trimethyl-propyl)-amide Length = 314

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 15/106 (14%)
Query: 92  QRVRIALDVAKGILYLHDECEP-------PILHCDIKPQNILMDEFWTAKILDFGLAKL- 143
           QR R  LD ++ +LY    C+          +H D+  +NIL++     KI DFGLAKL 
Sbjct: 105 QRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLL 164
Query: 144 -PNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLE 183
             ++D+ +  R+ G     + APE       S ++DV+ +G+VL E
Sbjct: 165 PLDKDYYV-VREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYE 209

>pdb|3C4W|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.7a Length = 543

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 8/134 (5%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQ--RVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD 128
           +  G +   I+   E NP + +   +     +  G+ +LH      I++ D+KP+N+L+D
Sbjct: 267 MNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRN---IIYRDLKPENVLLD 323
Query: 129 EFWTAKILDFGLA---KLPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETI 185
           +    +I D GLA   K             G+MAPE           D +  G+ L E I
Sbjct: 324 DDGNVRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMI 383
Query: 186 CCRKNMEIDASKPE 199
             R        K E
Sbjct: 384 AARGPFRARGEKVE 397

>pdb|3QC9|A Chain A, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C DOUBLE MUTANT Complexed With Adp And Mg Length = 543

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 8/134 (5%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQ--RVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD 128
           +  G +   I+   E NP + +   +     +  G+ +LH      I++ D+KP+N+L+D
Sbjct: 267 MNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRN---IIYRDLKPENVLLD 323
Query: 129 EFWTAKILDFGLA---KLPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETI 185
           +    +I D GLA   K             G+MAPE           D +  G+ L E I
Sbjct: 324 DDGNVRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMI 383
Query: 186 CCRKNMEIDASKPE 199
             R        K E
Sbjct: 384 AARGPFRARGEKVE 397

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 98  LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGY 157
           LDV +G+ YL    E  ++H D+  +N L+ E    K+ DFG+ +   +D         +
Sbjct: 110 LDVCEGMAYLE---EASVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKF 166
Query: 158 ----MAPECYKRTPISVKADVYGYGIVLLETI 185
                +PE +  +  S K+DV+ +G+++ E  
Sbjct: 167 PVKWASPEVFSFSRYSSKSDVWSFGVLMWEVF 198

>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 327

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 15/106 (14%)
Query: 92  QRVRIALDVAKGILYLHDECEP-------PILHCDIKPQNILMDEFWTAKILDFGLAKL- 143
           QR R  LD ++ +LY    C+          +H D+  +NIL++     KI DFGLAKL 
Sbjct: 118 QRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLL 177
Query: 144 -PNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLE 183
             ++D+ +  R+ G     + APE       S ++DV+ +G+VL E
Sbjct: 178 PLDKDYYV-VREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYE 222

>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site Inhibitor Showing High Selectivity Within The Janus Kinase Family Length = 315

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 15/106 (14%)
Query: 92  QRVRIALDVAKGILYLHDECEP-------PILHCDIKPQNILMDEFWTAKILDFGLAKL- 143
           QR R  LD ++ +LY    C+          +H D+  +NIL++     KI DFGLAKL 
Sbjct: 106 QRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLL 165
Query: 144 -PNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLE 183
             ++D+ +  R+ G     + APE       S ++DV+ +G+VL E
Sbjct: 166 PLDKDYYV-VREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYE 210

>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase Complex With Dasatinib Length = 268

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 73/165 (44%), Gaps = 24/165 (14%)
Query: 91  NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVI 150
           +Q + +  DV +G+ +L        +H D+  +N L+D     K+ DFG+ +   +D  +
Sbjct: 104 SQLLEMCYDVCEGMAFLESH---QFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYV 160
Query: 151 D----KRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNW 206
                K    + APE +     S K+DV+ +GI++ E     K M  D     E++L   
Sbjct: 161 SSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGK-MPYDLYTNSEVVL--- 216
Query: 207 VYKCFINRELNKLVRGTKVDKKNL--ENLVKVGLWCVQDEPALRP 249
                      K+ +G ++ + +L  + + ++   C  + P  RP
Sbjct: 217 -----------KVSQGHRLYRPHLASDTIYQIMYSCWHELPEKRP 250

>pdb|3V3V|A Chain A, Structural And Functional Analysis Of Quercetagetin, A Natural Jnk1 Inhibitor Length = 379

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAP 160
           GI +LH      I+H D+KP NI++    T KILDFGLA+     F++      + Y AP
Sbjct: 138 GIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPEVVTRYYRAP 194
Query: 161 ECYKRTPISVKADVYGYGIVLLETI 185
           E           D++  G ++ E I
Sbjct: 195 EVILGMGYKENVDIWSVGCIMGEMI 219

>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2 Chain) Length = 276

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 8/119 (6%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           V  G L D I C   R      R R+   +   + Y H      ++H D+KP+N+L+D  
Sbjct: 93  VSGGELFDYI-CKHGRVEEMEAR-RLFQQILSAVDYCHRHM---VVHRDLKPENVLLDAH 147
Query: 131 WTAKILDFGLAKLPNEDFVIDKR--DKGYMAPECYK-RTPISVKADVYGYGIVLLETIC 186
             AKI DFGL+ + ++   +        Y APE    R     + D++  G++L   +C
Sbjct: 148 MNAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLC 206

>pdb|3PP0|A Chain A, Crystal Structure Of The Kinase Domain Of Human Her2 (Erbb2). Length = 338

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 98  LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG- 156
           + +AKG+ YL D     ++H D+  +N+L+      KI DFGLA+L + D      D G 
Sbjct: 126 MQIAKGMSYLEDVR---LVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGK 182
Query: 157 ----YMAPECYKRTPISVKADVYGYGIVLLETIC 186
               +MA E   R   + ++DV+ YG+ + E + 
Sbjct: 183 VPIKWMALESILRRRFTHQSDVWSYGVTVWELMT 216

>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3 Length = 308

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG--YMA 159
           +G+ +LH  C   I+H D+KP+NIL+    T K+ DFGLA++ +    +        Y A
Sbjct: 131 RGLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALTPVVVTLWYRA 187
Query: 160 PECYKRTPISVKADVYGYGIVLLE 183
           PE   ++  +   D++  G +  E
Sbjct: 188 PEVLLQSTYATPVDMWSVGCIFAE 211

>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine Length = 353

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 81/186 (43%), Gaps = 11/186 (5%)
Query: 78  DIIFCSAERNPYWNQRVRI-ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKIL 136
           D++F   +   +   R R  A ++   +++LHD+    I++ D+K  N+L+D     K+ 
Sbjct: 110 DLMFHIQKSRRFDEARARFYAAEIISALMFLHDKG---IIYRDLKLDNVLLDHEGHCKLA 166
Query: 137 DFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEI 193
           DFG+ K    + V      G   Y+APE  +        D +  G++L E +C     E 
Sbjct: 167 DFGMCKEGICNGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEA 226
Query: 194 DASKP--EEIILTNWVYKCFINRELNKLVRG--TKVDKKNLENLVKVGLWCVQDEPALRP 249
           +      E I+    VY  +++ +   +++   TK     L +L + G   +   P  + 
Sbjct: 227 ENEDDLFEAILNDEVVYPTWLHEDATGILKSFMTKNPTMRLGSLTQGGEHAILRHPFFKE 286
Query: 250 MKCAVM 255
           +  A +
Sbjct: 287 IDWAQL 292

>pdb|4F4P|A Chain A, Syk In Complex With Ligand Lasw836 Length = 273

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-LPNEDFVIDK 152
           + +   V+ G+ YL    E   +H D+  +N+L+     AKI DFGL+K L  ++     
Sbjct: 108 IELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKA 164
Query: 153 RDKG-----YMAPECYKRTPISVKADVYGYGIVLLETIC 186
           +  G     + APEC      S K+DV+ +G+++ E   
Sbjct: 165 QTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFS 203

>pdb|4E5A|X Chain X, The W197a Mutant Of P38a Map Kinase Length = 360

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 16/96 (16%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++        GY+A
Sbjct: 134 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMT------GYVA 184
Query: 160 PECYKRTPISVKA-------DVYGYGIVLLETICCR 188
              Y+   I + A       D++  G ++ E +  R
Sbjct: 185 TRWYRAPEIMLNAMHYNQTVDIWSVGCIMAELLTGR 220

>pdb|3VUH|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M3 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAP 160
           GI +LH      I+H D+KP NI++    T KILDFGLA+     F++      + Y AP
Sbjct: 138 GIKHLHSAG---IIHRDLKPSNIVVKSDATLKILDFGLARTAGTSFMMTPYVVTRYYRAP 194
Query: 161 ECYKRTPISVKADVYGYGIVLLETI 185
           E           D++  G ++ E I
Sbjct: 195 EVILGMGYKENVDIWSVGCIMGEMI 219

>pdb|4DFL|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With A Sulfonamidopyrazine Piperidine Inhibitor Length = 274

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-LPNEDFVIDK 152
           + +   V+ G+ YL    E   +H D+  +N+L+     AKI DFGL+K L  ++     
Sbjct: 110 IELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKA 166
Query: 153 RDKG-----YMAPECYKRTPISVKADVYGYGIVLLETIC 186
           +  G     + APEC      S K+DV+ +G+++ E   
Sbjct: 167 QTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFS 205

>pdb|3VUI|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAP 160
           GI +LH      I+H D+KP NI++    T KILDFGLA+     F++      + Y AP
Sbjct: 138 GIKHLHSAG---IIHRDLKPSNIVVKSDATLKILDFGLARTAGTSFMMTPYVVTRYYRAP 194
Query: 161 ECYKRTPISVKADVYGYGIVLLETI 185
           E           D++  G ++ E I
Sbjct: 195 EVILGMGYKENVDIWSVGCIMGEMI 219

>pdb|3VUK|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M5 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAP 160
           GI +LH      I+H D+KP NI++    T KILDFGLA+     F++      + Y AP
Sbjct: 138 GIKHLHSAG---IIHRDLKPSNIVVKSDATLKILDFGLARTAGTSFMMTPYVVTRYYRAP 194
Query: 161 ECYKRTPISVKADVYGYGIVLLETI 185
           E           D++  G ++ E I
Sbjct: 195 EVILGMGYKENVDIWSVGCIMGEMI 219

>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex With A Staurosporine Analogue Length = 290

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 13/105 (12%)
Query: 92  QRVRIALDVAKGILYLHDECEP-------PILHCDIKPQNILMDEFWTAKILDFGLAK-L 143
           QR R  LD ++ +LY    C+          +H D+  +NIL++     KI DFGLAK L
Sbjct: 102 QRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLL 161
Query: 144 PNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLE 183
           P +      R+ G     + APE       S ++DV+ +G+VL E
Sbjct: 162 PLDKDXXVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYE 206

>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG--YMA 159
           +G+ +LH  C   I+H D+KP+NIL+    T K+ DFGLA++ +    +        Y A
Sbjct: 123 RGLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALAPVVVTLWYRA 179
Query: 160 PECYKRTPISVKADVYGYGIVLLE 183
           PE   ++  +   D++  G +  E
Sbjct: 180 PEVLLQSTYATPVDMWSVGCIFAE 203

>pdb|1XBA|A Chain A, Crystal Structure Of Apo Syk Tyrosine Kinase Domain Length = 291

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-LPNEDFVIDK 152
           + +   V+ G+ YL    E   +H D+  +N+L+     AKI DFGL+K L  ++     
Sbjct: 120 IELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKA 176
Query: 153 RDKG-----YMAPECYKRTPISVKADVYGYGIVLLETIC 186
           +  G     + APEC      S K+DV+ +G+++ E   
Sbjct: 177 QTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFS 215

>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
           Q V +   +A G+ YL D      +H D+  +NIL++     K+ DFGLA++  +D    
Sbjct: 148 QLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLARVLEDDPEAA 204
Query: 152 KRDKG------YMAPECYKRTPISVKADVYGYGIVLLETIC 186
              +G      + +PE       +  +DV+ YGIVL E + 
Sbjct: 205 YTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 245

>pdb|3SRV|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In Complex With A Diaminopyrimidine Carboxamide Inhibitor Length = 277

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-LPNEDFVIDK 152
           + +   V+ G+ YL    E   +H D+  +N+L+     AKI DFGL+K L  ++     
Sbjct: 114 IELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENXYKA 170
Query: 153 RDKG-----YMAPECYKRTPISVKADVYGYGIVLLETIC 186
           +  G     + APEC      S K+DV+ +G+++ E   
Sbjct: 171 QTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFS 209

>pdb|3SRV|B Chain B, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In Complex With A Diaminopyrimidine Carboxamide Inhibitor Length = 277

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-LPNEDFVIDK 152
           + +   V+ G+ YL    E   +H D+  +N+L+     AKI DFGL+K L  ++     
Sbjct: 114 IELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKA 170
Query: 153 RDKG-----YMAPECYKRTPISVKADVYGYGIVLLETIC 186
           +  G     + APEC      S K+DV+ +G+++ E   
Sbjct: 171 QTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFS 209

>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 7/120 (5%)
Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           GSL D +           + +  +  +A+G+ Y+  +     +H D++  N+L+ E    
Sbjct: 92  GSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKN---YIHRDLRAANVLVSESLMC 148
Query: 134 KILDFGLAKLPNEDFVIDKRDKGY----MAPECYKRTPISVKADVYGYGIVLLETICCRK 189
           KI DFGLA++  ++    +    +     APE       ++K++V+ +GI+L E +   K
Sbjct: 149 KIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGCFTIKSNVWSFGILLYEIVTYGK 208

>pdb|3FI2|A Chain A, Crystal Structure Of Jnk3 With Amino-Pyrazole Inhibitor, Sr- 3451 Length = 353

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAP 160
           GI +LH      I+H D+KP NI++    T KILDFGLA+     F++      + Y AP
Sbjct: 138 GIKHLHSAG---IIHRDLKPSNIVVKSDXTLKILDFGLARTAGTSFMMTPYVVTRYYRAP 194
Query: 161 ECYKRTPISVKADVYGYGIVLLETI 185
           E           D++  G ++ E +
Sbjct: 195 EVILGMGYKENVDIWSVGCIMGEMV 219

>pdb|3EMG|A Chain A, Discovery And Sar Of Novel 4-Thiazolyl-2- Phenylaminopyrimidines As Potent Inhibitors Of Spleen Tyrosine Kinase (Syk) Length = 291

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-LPNEDFVIDK 152
           + +   V+ G+ YL    E   +H D+  +N+L+     AKI DFGL+K L  ++     
Sbjct: 128 IELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKA 184
Query: 153 RDKG-----YMAPECYKRTPISVKADVYGYGIVLLETIC 186
           +  G     + APEC      S K+DV+ +G+++ E   
Sbjct: 185 QTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFS 223

>pdb|2PML|X Chain X, Crystal Structure Of Pfpk7 In Complex With An Atp Analogue Length = 348

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 15/90 (16%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG--- 156
           V     Y+H+E    I H D+KP NILMD+    K+ DFG +     ++++DK+ KG   
Sbjct: 160 VLNSFSYIHNE--KNICHRDVKPSNILMDKNGRVKLSDFGES-----EYMVDKKIKGSRG 212
Query: 157 ---YMAPECY--KRTPISVKADVYGYGIVL 181
              +M PE +  + +    K D++  GI L
Sbjct: 213 TYEFMPPEFFSNESSYNGAKVDIWSLGICL 242

>pdb|1UKH|A Chain A, Structural Basis For The Selective Inhibition Of Jnk1 By The Scaffolding Protein Jip1 And Sp600125 Length = 369

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAP 160
           GI +LH      I+H D+KP NI++    T KILDFGLA+     F++      + Y AP
Sbjct: 138 GIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAP 194
Query: 161 ECYKRTPISVKADVYGYGIVLLETI 185
           E           D++  G ++ E I
Sbjct: 195 EVILGMGYKENVDIWSVGCIMGEMI 219

>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70 Length = 613

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 10/119 (8%)
Query: 73  NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT 132
            G L   +    E  P  N    +   V+ G+ YL    E   +H ++  +N+L+     
Sbjct: 419 GGPLHKFLVGKREEIPVSNV-AELLHQVSMGMKYLE---EKNFVHRNLAARNVLLVNRHY 474
Query: 133 AKILDFGLAK-LPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
           AKI DFGL+K L  +D     R  G     + APEC      S ++DV+ YG+ + E +
Sbjct: 475 AKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEAL 533

>pdb|2ZV2|A Chain A, Crystal Structure Of Human CalciumCALMODULIN-Dependent Protein Kinase Kinase 2, Beta, Camkk2 Kinase Domain In Complex With Sto-609 Length = 298

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Query: 99  DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA-KLPNEDFVIDKR--DK 155
           D+ KGI YLH +    I+H DIKP N+L+ E    KI DFG++ +    D ++       
Sbjct: 145 DLIKGIEYLHYQ---KIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVGTP 201
Query: 156 GYMAPECYKRTP--ISVKA-DVYGYGIVL 181
            +MAPE    T    S KA DV+  G+ L
Sbjct: 202 AFMAPESLSETRKIFSGKALDVWAMGVTL 230

>pdb|2XRW|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin Antagonistically Control The Nuclear Shuttling Of Nfat4 Length = 371

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAP 160
           GI +LH      I+H D+KP NI++    T KILDFGLA+     F++      + Y AP
Sbjct: 139 GIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAP 195
Query: 161 ECYKRTPISVKADVYGYGIVLLETI 185
           E           D++  G ++ E I
Sbjct: 196 EVILGMGYKENVDIWSVGCIMGEMI 220

>pdb|3VUD|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAP 160
           GI +LH      I+H D+KP NI++    T KILDFGLA+     F++      + Y AP
Sbjct: 138 GIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAP 194
Query: 161 ECYKRTPISVKADVYGYGIVLLETI 185
           E           D++  G ++ E I
Sbjct: 195 EVILGMGYKENVDIWSVGCIMGEMI 219

>pdb|3TUB|A Chain A, Crystal Structure Of Syk Kinase Domain With 1-(5-(6,7- Dimethoxyquinolin-4-Yloxy)pyridin-2-Yl)-3-((1r,2s)-2- Phenylcyclopropyl)urea Length = 293

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-LPNEDFVIDK 152
           + +   V+ G+ YL    E   +H D+  +N+L+     AKI DFGL+K L  ++     
Sbjct: 130 IELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKA 186
Query: 153 RDKG-----YMAPECYKRTPISVKADVYGYGIVLLETIC 186
           +  G     + APEC      S K+DV+ +G+++ E   
Sbjct: 187 QTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFS 225

>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With Compound 7 Length = 298

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           GSL + +    ER  +  + ++    + KG+ YL  +     +H D+  +NIL++     
Sbjct: 101 GSLREYLQKHKERIDHI-KLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRV 156
Query: 134 KILDFGLAK-LPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICC 187
           KI DFGL K LP +      ++ G     + APE    +  SV +DV+ +G+VL E    
Sbjct: 157 KIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTY 216
Query: 188 RKNMEIDASKPEEII 202
              +E   S P E +
Sbjct: 217 ---IEKSKSPPAEFM 228

>pdb|3VF8|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Syk Catalytic Domain With Pyrazolylbenzimidazole Inhibitor 416 Length = 299

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-LPNEDFVIDK 152
           + +   V+ G+ YL    E   +H D+  +N+L+     AKI DFGL+K L  ++     
Sbjct: 130 IELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKA 186
Query: 153 RDKG-----YMAPECYKRTPISVKADVYGYGIVLLETIC 186
           +  G     + APEC      S K+DV+ +G+++ E   
Sbjct: 187 QTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFS 225

>pdb|3FV8|A Chain A, Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774 Length = 355

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAP 160
           GI +LH      I+H D+KP NI++    T KILDFGLA+     F++      + Y AP
Sbjct: 138 GIKHLHSAG---IIHRDLKPSNIVVKSDXTLKILDFGLARTAGTSFMMTPYVVTRYYRAP 194
Query: 161 ECYKRTPISVKADVYGYGIVLLETI 185
           E           D++  G ++ E +
Sbjct: 195 EVILGMGYKENVDIWSVGCIMGEMV 219

>pdb|3NPC|A Chain A, Crystal Structure Of Jnk2 Complexed With Birb796 Length = 364

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAP 160
           GI +LH      I+H D+KP NI++    T KILDFGLA+    +F++      + Y AP
Sbjct: 138 GIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTACTNFMMTPYVVTRYYRAP 194
Query: 161 ECYKRTPISVKADVYGYGIVLLETI 185
           E       +   D++  G ++ E +
Sbjct: 195 EVILGMGYAANVDIWSVGCIMGELV 219

>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2 Length = 298

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           GSL D +    ER  +  + ++    + KG+ YL  +     +H ++  +NIL++     
Sbjct: 99  GSLRDYLQKHKERIDHI-KLLQYTSQICKGMEYLGTK---RYIHRNLATRNILVENENRV 154
Query: 134 KILDFGLAK-LPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICC 187
           KI DFGL K LP +      ++ G     + APE    +  SV +DV+ +G+VL E    
Sbjct: 155 KIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTY 214
Query: 188 RKNMEIDASKPEEII 202
              +E   S P E +
Sbjct: 215 ---IEKSKSPPAEFM 226

>pdb|3VUG|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAP 160
           GI +LH      I+H D+KP NI++    T KILDFGLA+     F++      + Y AP
Sbjct: 138 GIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAP 194
Query: 161 ECYKRTPISVKADVYGYGIVLLETI 185
           E           D++  G ++ E I
Sbjct: 195 EVILGMGYKENVDIWSVGCIMGEMI 219

>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Cgp74514a Length = 303

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 9/118 (7%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +  G+LTDI+  +        Q   + L V + +  LH +    ++H DIK  +IL+   
Sbjct: 110 LEGGALTDIVTHTRMNE---EQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHD 163
Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETI 185
              K+ DFG     +++    K   G   +MAPE   R P   + D++  GI+++E +
Sbjct: 164 GRVKLSDFGFCAQVSKEVPRRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMV 221

>pdb|3E7O|A Chain A, Crystal Structure Of Jnk2 Length = 360

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAP 160
           GI +LH      I+H D+KP NI++    T KILDFGLA+  + +F++      + Y AP
Sbjct: 136 GIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTASTNFMMTPYVVTRYYRAP 192
Query: 161 ECYKRTPISVKADVYGYGIVLLETI 185
           E           D++  G ++ E +
Sbjct: 193 EVILGMGYKENVDIWSVGCIMGELV 217

>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In Complex With A Consensus Peptide Length = 301

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 9/118 (7%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +  G+LTDI+  +        Q   + L V + +  LH +    ++H DIK  +IL+   
Sbjct: 108 LEGGALTDIVTHTRMNE---EQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHD 161
Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETI 185
              K+ DFG     +++    K   G   +MAPE   R P   + D++  GI+++E +
Sbjct: 162 GRVKLSDFGFCAQVSKEVPRRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMV 219

>pdb|2BAL|A Chain A, P38alpha Map Kinase Bound To Pyrazoloamine Length = 365

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 139 ILRGLKYIH---SADIIHRDLKPSNLAVNEDXELKILDFGLARHTDDEMTGYVATRWYRA 195
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 196 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 225

>pdb|3D83|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 134 ILRGLKYIH---SADIIHRDLKPSNLAVNEDXELKILDFGLARHTDDEMTGYVATRWYRA 190
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 191 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 220

>pdb|3E92|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl Amide Inhibitor Length = 371

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 145 ILRGLKYIH---SADIIHRDLKPSNLAVNEDXELKILDFGLARHTDDEMTGYVATRWYRA 201
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 202 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 231

>pdb|4FIE|A Chain A, Full-Length Human Pak4 Length = 423

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 9/118 (7%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +  G+LTDI+  +        Q   + L V + +  LH +    ++H DIK  +IL+   
Sbjct: 230 LEGGALTDIVTHTRMNE---EQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHD 283
Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETI 185
              K+ DFG     +++    K   G   +MAPE   R P   + D++  GI+++E +
Sbjct: 284 GRVKLSDFGFCAQVSKEVPRRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMV 341

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 8/134 (5%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR 153
           V  A ++A G+ +L  +    I++ D+K  N+++D     KI DFG+ K    D V  K 
Sbjct: 445 VFYAAEIAIGLFFLQSKG---IIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKX 501
Query: 154 DKG---YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKP--EEIILTNWVY 208
             G   Y+APE     P     D + +G++L E +  +   E +      + I+  N  Y
Sbjct: 502 FCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAY 561
Query: 209 KCFINRELNKLVRG 222
              +++E   + +G
Sbjct: 562 PKSMSKEAVAICKG 575

>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 Length = 292

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 9/118 (7%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +  G+LTDI+  +        Q   + L V + +  LH +    ++H DIK  +IL+   
Sbjct: 99  LEGGALTDIVTHTRMNE---EQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHD 152
Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETI 185
              K+ DFG     +++    K   G   +MAPE   R P   + D++  GI+++E +
Sbjct: 153 GRVKLSDFGFCAQVSKEVPRRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMV 210

>pdb|3GC8|A Chain A, The Structure Of P38beta C162s In Complex With A Dihydroquinazolinone Length = 370

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 73  NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT 132
              L +I+ C A  + +      +   + +G+ Y+H      I+H D+KP N+ ++E   
Sbjct: 116 GADLNNIVKCQALSDEHVQ---FLVYQLLRGLKYIHSAG---IIHRDLKPSNVAVNEDSE 169
Query: 133 AKILDFGLAKLPNEDFVIDKRDKGYMAPE 161
            +ILDFGLA+  +E+       + Y APE
Sbjct: 170 LRILDFGLARQADEEMTGYVATRWYRAPE 198

>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide Length = 346

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 9/118 (7%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +  G+LTDI+  +        Q   + L V + +  LH +    ++H DIK  +IL+   
Sbjct: 153 LEGGALTDIVTHTRMNE---EQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHD 206
Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETI 185
              K+ DFG     +++    K   G   +MAPE   R P   + D++  GI+++E +
Sbjct: 207 GRVKLSDFGFCAQVSKEVPRRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMV 264

>pdb|3NNX|A Chain A, Crystal Structure Of Phosphorylated P38 Alpha In Complex With Dp802 Length = 354

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 134 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGXVATRWYRA 190
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 191 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 220

>pdb|3KVX|A Chain A, Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562 Length = 364

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAP 160
           GI +LH      I+H D+KP NI++    T KILDFGLA+     F++      + Y AP
Sbjct: 138 GIKHLHSAG---IIHRDLKPSNIVVKSDXTLKILDFGLARTAGTSFMMTPYVVTRYYRAP 194
Query: 161 ECYKRTPISVKADVYGYGIVLLETI 185
           E           D++  G ++ E +
Sbjct: 195 EVILGMGYKENVDIWSVGCIMGEMV 219

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
           Q V +   +A G+ YL D      +H D+  +NIL++     K+ DFGL+++  +D    
Sbjct: 148 QLVGMLRGIASGMKYLSDMG---FVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAA 204
Query: 152 KRDKG------YMAPECYKRTPISVKADVYGYGIVLLETIC 186
              +G      + +PE       +  +DV+ YGIVL E + 
Sbjct: 205 YTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 245

>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Pf-03758309 Length = 296

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 9/118 (7%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +  G+LTDI+  +        Q   + L V + +  LH +    ++H DIK  +IL+   
Sbjct: 103 LEGGALTDIVTHTRMNE---EQIAAVCLAVLQALSVLHAQG---VIHRDIKSDSILLTHD 156
Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETI 185
              K+ DFG     +++    K   G   +MAPE   R P   + D++  GI+++E +
Sbjct: 157 GRVKLSDFGFCAQVSKEVPRRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMV 214

>pdb|2BAQ|A Chain A, P38alpha Bound To Ro3201195 Length = 365

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 139 ILRGLKYIH---SADIIHRDLKPSNLAVNEDXELKILDFGLARHTDDEMTGYVATRWYRA 195
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 196 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 225

>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG--YMA 159
           +G+ +LH  C   I+H D+KP+NIL+    T K+ DFGLA++ +    +        Y A
Sbjct: 123 RGLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALFPVVVTLWYRA 179
Query: 160 PECYKRTPISVKADVYGYGIVLLE 183
           PE   ++  +   D++  G +  E
Sbjct: 180 PEVLLQSTYATPVDMWSVGCIFAE 203

>pdb|3FI3|A Chain A, Crystal Structure Of Jnk3 With Indazole Inhibitor, Sr-3737 Length = 364

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAP 160
           GI +LH      I+H D+KP NI++    T KILDFGLA+     F++      + Y AP
Sbjct: 138 GIKHLHSAG---IIHRDLKPSNIVVKSDXTLKILDFGLARTAGTSFMMTPYVVTRYYRAP 194
Query: 161 ECYKRTPISVKADVYGYGIVLLETI 185
           E           D++  G ++ E +
Sbjct: 195 EVILGMGYKENVDIWSVGCIMGEMV 219

>pdb|2R9S|A Chain A, C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Quinoline Inhibitor Length = 356

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAP 160
           GI +LH      I+H D+KP NI++    T KILDFGLA+     F++      + Y AP
Sbjct: 131 GIKHLHSAG---IIHRDLKPSNIVVKSDXTLKILDFGLARTAGTSFMMTPYVVTRYYRAP 187
Query: 161 ECYKRTPISVKADVYGYGIVLLETI 185
           E           D++  G ++ E +
Sbjct: 188 EVILGMGYKENVDIWSVGCIMGEMV 212

>pdb|1OVE|A Chain A, The Structure Of P38 Alpha In Complex With A Dihydroquinolinone Length = 366

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 140 ILRGLKYIH---SADIIHRDLKPSNLAVNEDSELKILDFGLARHTDDEMTGYVATRWYRA 196
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 197 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 226

>pdb|2Y8O|A Chain A, Crystal Structure Of Human P38alpha Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 136 ILRGLKYIH---SADIIHRDLKPSNLAVNEDSELKILDFGLARHTDDEMTGYVATRWYRA 192
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 193 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 222

>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
           Q V +   +A G+ YL D      +H D+  +NIL++     K+ DFGL+++  +D    
Sbjct: 119 QLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAA 175
Query: 152 KRDKG------YMAPECYKRTPISVKADVYGYGIVLLETIC 186
              +G      + +PE       +  +DV+ YGIVL E + 
Sbjct: 176 YTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 216

>pdb|3RZF|A Chain A, Crystal Structure Of Inhibitor Of Kappab Kinase Beta (I4122) Length = 677

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 14/95 (14%)
Query: 99  DVAKGILYLHDECEPPILHCDIKPQNILMD---EFWTAKILDFGLAKLPNE-----DFVI 150
           D++  + YLH   E  I+H D+KP+NI++    +    KI+D G AK  ++     +FV 
Sbjct: 130 DISSALRYLH---ENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGELCTEFVG 186
Query: 151 DKRDKGYMAPECYKRTPISVKADVYGYGIVLLETI 185
             +   Y+APE  ++   +V  D + +G +  E I
Sbjct: 187 TLQ---YLAPELLEQKKYTVTVDYWSFGTLAFECI 218

>pdb|3QA8|A Chain A, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta Length = 676

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 14/95 (14%)
Query: 99  DVAKGILYLHDECEPPILHCDIKPQNILMD---EFWTAKILDFGLAKLPNE-----DFVI 150
           D++  + YLH   E  I+H D+KP+NI++    +    KI+D G AK  ++     +FV 
Sbjct: 129 DISSALRYLH---ENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGELCTEFVG 185
Query: 151 DKRDKGYMAPECYKRTPISVKADVYGYGIVLLETI 185
             +   Y+APE  ++   +V  D + +G +  E I
Sbjct: 186 TLQ---YLAPELLEQKKYTVTVDYWSFGTLAFECI 217

>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6 Length = 321

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 9/118 (7%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           ++ G+LTDI+   ++      Q   +   V + + YLH +    ++H DIK  +IL+   
Sbjct: 124 LQGGALTDIV---SQVRLNEEQIATVCEAVLQALAYLHAQG---VIHRDIKSDSILLTLD 177
Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETI 185
              K+ DFG     ++D    K   G   +MAPE   R+  + + D++  GI+++E +
Sbjct: 178 GRVKLSDFGFCAQISKDVPKRKXLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMV 235

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
           Q V +   +A G+ YL D      +H D+  +NIL++     K+ DFGL+++  +D    
Sbjct: 136 QLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAA 192
Query: 152 KRDKG------YMAPECYKRTPISVKADVYGYGIVLLETIC 186
              +G      + +PE       +  +DV+ YGIVL E + 
Sbjct: 193 YTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 233

>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
           Q V +   +A G+ YL D      +H D+  +NIL++     K+ DFGL+++  +D    
Sbjct: 119 QLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAA 175
Query: 152 KRDKG------YMAPECYKRTPISVKADVYGYGIVLLETIC 186
              +G      + +PE       +  +DV+ YGIVL E + 
Sbjct: 176 YTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 216

>pdb|4FL3|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 635

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-LPNEDFVIDK 152
           + +   V+ G+ YL    E   +H D+  +N+L+     AKI DFGL+K L  ++     
Sbjct: 472 IELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKA 528
Query: 153 RDKG-----YMAPECYKRTPISVKADVYGYGIVLLETIC 186
           +  G     + APEC      S K+DV+ +G+++ E   
Sbjct: 529 QTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFS 567

>pdb|3TTJ|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-359, A Jnk Inhibitor For The Prevention Of Ischemia-Reperfusion Injury Length = 464

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAP 160
           GI +LH      I+H D+KP NI++    T KILDFGLA+     F++      + Y AP
Sbjct: 176 GIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAP 232
Query: 161 ECYKRTPISVKADVYGYGIVLLETI 185
           E           D++  G ++ E +
Sbjct: 233 EVILGMGYKENVDIWSVGCIMGEMV 257

>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092, Delete A660- T867) At 2.28 A Resolution Length = 299

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 18/107 (16%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED------ 147
           + I L +A+ + +LH +    ++H D+KP NI        K+ DFGL    ++D      
Sbjct: 121 LHIFLQIAEAVEFLHSKG---LMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTV 177
Query: 148 ---FVIDKRDKG------YMAPECYKRTPISVKADVYGYGIVLLETI 185
                   R  G      YM+PE       S K D++  G++L E +
Sbjct: 178 LTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELL 224

>pdb|4FL2|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 636

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-LPNEDFVIDK 152
           + +   V+ G+ YL    E   +H D+  +N+L+     AKI DFGL+K L  ++     
Sbjct: 473 IELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKA 529
Query: 153 RDKG-----YMAPECYKRTPISVKADVYGYGIVLLETIC 186
           +  G     + APEC      S K+DV+ +G+++ E   
Sbjct: 530 QTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFS 568

>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Length = 284

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGL-AKLPNEDFVIDKRDKG-- 156
           + KG+ Y+H +    +++ D+KP NI + +    KI DFGL   L N+      R KG  
Sbjct: 131 ITKGVDYIHSK---KLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDG--KRXRSKGTL 185
Query: 157 -YMAPECYKRTPISVKADVYGYGIVLLETI 185
            YM+PE         + D+Y  G++L E +
Sbjct: 186 RYMSPEQISSQDYGKEVDLYALGLILAELL 215

>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1, Cgd3_920 Length = 486

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA---KILDFGLAKLPNEDFVI 150
            RI   V  GI Y+H   +  I+H D+KP+NIL++        KI+DFGL+    ++  +
Sbjct: 124 ARIIKQVFSGITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKM 180
Query: 151 DKR--DKGYMAPECYKRTPISVKADVYGYGIVL 181
             R     Y+APE  + T    K DV+  G++L
Sbjct: 181 KDRIGTAYYIAPEVLRGT-YDEKCDVWSAGVIL 212

>pdb|1PMN|A Chain A, Crystal Structure Of Jnk3 In Complex With An Imidazole- Pyrimidine Inhibitor Length = 364

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAP 160
           GI +LH      I+H D+KP NI++    T KILDFGLA+     F++      + Y AP
Sbjct: 139 GIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAP 195
Query: 161 ECYKRTPISVKADVYGYGIVLLETI 185
           E           D++  G ++ E +
Sbjct: 196 EVILGMGYKENVDIWSVGCIMGEMV 220

>pdb|3LL6|A Chain A, Crystal Structure Of The Human Cyclin G Associated Kinase (gak) Length = 337

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 21/143 (14%)
Query: 74  GSLTDIIFCSAERNPYW-NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT 132
           G L + +     R P   +  ++I     + + ++H + +PPI+H D+K +N+L+    T
Sbjct: 118 GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQ-KPPIIHRDLKVENLLLSNQGT 176
Query: 133 AKILDFG----LAKLPN-----------EDFVIDKRDKGYMAPE---CYKRTPISVKADV 174
            K+ DFG    ++  P+           E+ +       Y  PE    Y   PI  K D+
Sbjct: 177 IKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDI 236
Query: 175 YGYGIVLLETICCRKNMEIDASK 197
           +  G +L   +C R++   D +K
Sbjct: 237 WALGCILY-LLCFRQHPFEDGAK 258

>pdb|3PTG|A Chain A, Design And Synthesis Of A Novel, Orally Efficacious Tri-Substituted Thiophene Based Jnk Inhibitor Length = 363

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAP 160
           GI +LH      I+H D+KP NI++    T KILDFGLA+     F++      + Y AP
Sbjct: 138 GIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAP 194
Query: 161 ECYKRTPISVKADVYGYGIVLLETI 185
           E           D++  G ++ E +
Sbjct: 195 EVILGMGYKENVDIWSVGCIMGEMV 219

>pdb|3GC9|A Chain A, The Structure Of P38beta C119s, C162s In Complex With A Dihydroquinazolinone Inhibitor Length = 370

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMAPE 161
           +G+ Y+H      I+H D+KP N+ ++E    +ILDFGLA+  +E+       + Y APE
Sbjct: 142 RGLKYIHSAG---IIHRDLKPSNVAVNEDSELRILDFGLARQADEEMTGYVATRWYRAPE 198
Query: 162 C 162
Sbjct: 199 I 199

>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
           Q V +   +A G+ YL D      +H D+  +NIL++     K+ DFGL+++  +D    
Sbjct: 148 QLVGMLRGIASGMKYLSDMGA---VHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAA 204
Query: 152 KRDKG------YMAPECYKRTPISVKADVYGYGIVLLETIC 186
              +G      + +PE       +  +DV+ YGIVL E + 
Sbjct: 205 YTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 245

>pdb|1JNK|A Chain A, The C-Jun N-Terminal Kinase (Jnk3s) Complexed With Mgamp-Pnp Length = 423

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAP 160
           GI +LH      I+H D+KP NI++    T KILDFGLA+     F++      + Y AP
Sbjct: 176 GIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAP 232
Query: 161 ECYKRTPISVKADVYGYGIVLLETI 185
           E           D++  G ++ E +
Sbjct: 233 EVILGMGYKENVDIWSVGCIMGEMV 257

>pdb|2OK1|A Chain A, Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3- Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide Length = 365

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAP 160
           GI +LH      I+H D+KP NI++    T KILDFGLA+     F++      + Y AP
Sbjct: 139 GIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAP 195
Query: 161 ECYKRTPISVKADVYGYGIVLLETI 185
           E           D++  G ++ E +
Sbjct: 196 EVILGMGYKENVDIWSVGCIMGEMV 220

>pdb|3OXI|A Chain A, Design And Synthesis Of Disubstituted Thiophene And Thiazole Based Inhibitors Of Jnk For The Treatment Of Neurodegenerative Diseases Length = 362

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAP 160
           GI +LH      I+H D+KP NI++    T KILDFGLA+     F++      + Y AP
Sbjct: 137 GIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAP 193
Query: 161 ECYKRTPISVKADVYGYGIVLLETI 185
           E           D++  G ++ E +
Sbjct: 194 EVILGMGYKENVDIWSVGCIMGEMV 218

>pdb|3PY3|A Chain A, Crystal Structure Of Phosphorylated P38alpha Map Kinase Length = 380

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 154 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMXGXVATRWYRA 210
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 211 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 240

>pdb|3ODZ|X Chain X, Crystal Structure Of P38alpha Y323r Active Mutant Length = 360

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 134 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRA 190
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 191 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 220

>pdb|3OD6|X Chain X, Crystal Structure Of P38alpha Y323t Active Mutant Length = 360

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 134 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRA 190
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 191 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 220

>pdb|3GP0|A Chain A, Crystal Structure Of Human Mitogen Activated Protein Kinase 11 (p38 Beta) In Complex With Nilotinib Length = 348

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 73  NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT 132
              L +I+ C A  + +      +   + +G+ Y+H      I+H D+KP N+ ++E   
Sbjct: 108 GADLNNIVKCQALSDEHVQ---FLVYQLLRGLKYIHSAG---IIHRDLKPSNVAVNEDCE 161
Query: 133 AKILDFGLAKLPNEDFVIDKRDKGYMAPE 161
            +ILDFGLA+  +E+       + Y APE
Sbjct: 162 LRILDFGLARQADEEMTGYVATRWYRAPE 190

>pdb|2O0U|A Chain A, Crystal Structure Of Human Jnk3 Complexed With N-{3-Cyano-6-[3-(1- Piperidinyl)propanoyl]-4,5,6,7-Tetrahydrothieno[2, 3-C]pyridin-2-Yl}- 1-Naphthalenecarboxamide Length = 364

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAP 160
           GI +LH      I+H D+KP NI++    T KILDFGLA+     F++      + Y AP
Sbjct: 138 GIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAP 194
Query: 161 ECYKRTPISVKADVYGYGIVLLETI 185
           E           D++  G ++ E +
Sbjct: 195 EVILGMGYKENVDIWSVGCIMGEMV 219

>pdb|1OZ1|A Chain A, P38 Mitogen-Activated Kinase In Complex With 4-Azaindole Inhibitor Length = 372

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 146 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRA 202
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 203 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 232

>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 13/142 (9%)
Query: 51  LLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDE 110
           L  V  R +L  +   +   + NGSL D    + +      Q V +   V  G+ YL D 
Sbjct: 115 LEGVVTRGRLAMI---VTEYMENGSL-DTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDL 170
Query: 111 CEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG------YMAPECYK 164
                +H D+  +N+L+D     K+ DFGL+++  +D        G      + APE   
Sbjct: 171 G---YVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAXTTTGGKIPIRWTAPEAIA 227
Query: 165 RTPISVKADVYGYGIVLLETIC 186
               S  +DV+ +G+V+ E + 
Sbjct: 228 FRTFSSASDVWSFGVVMWEVLA 249

>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain Length = 283

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 115 ILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAPECYK-RTPISVK 171
           I+H D+KP+N+L+DE    KI DFGL+ +  +   +        Y APE    +     +
Sbjct: 134 IVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVISGKLYAGPE 193
Query: 172 ADVYGYGIVLLETICCR 188
            DV+  G++L   +C R
Sbjct: 194 VDVWSCGVILYVMLCRR 210

>pdb|2GFS|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3201195 Length = 372

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 146 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRA 202
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 203 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 232

>pdb|3FI4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro4499 Length = 372

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 146 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRA 202
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 203 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 232

>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast Amp-Activated Protein Kinase Snf1 Length = 275

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 115 ILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAPECYK-RTPISVK 171
           I+H D+KP+N+L+DE    KI DFGL+ +  +   +        Y APE    +     +
Sbjct: 133 IVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVISGKLYAGPE 192
Query: 172 ADVYGYGIVLLETICCR 188
            DV+  G++L   +C R
Sbjct: 193 VDVWSCGVILYVMLCRR 209

>pdb|4H36|A Chain A, Crystal Structure Of Jnk3 In Complex With Atf2 Peptide Length = 356

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAP 160
           GI +LH      I+H D+KP NI++    T KILDFGLA+     F++      + Y AP
Sbjct: 132 GIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAP 188
Query: 161 ECYKRTPISVKADVYGYGIVLLETI 185
           E           D++  G ++ E +
Sbjct: 189 EVILGMGYKENVDIWSVGCIMGEMV 213

>pdb|3ODY|X Chain X, Crystal Structure Of P38alpha Y323q Active Mutant Length = 360

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 134 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRA 190
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 191 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 220

>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
           Q V +   +A G+ YL D      +H D+  +NIL++     K+ DFGL+++  +D    
Sbjct: 148 QLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAA 204
Query: 152 KRDKG------YMAPECYKRTPISVKADVYGYGIVLLETIC 186
              +G      + +PE       +  +DV+ YGIVL E + 
Sbjct: 205 YTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 245

>pdb|2B1P|A Chain A, Inhibitor Complex Of Jnk3 Length = 355

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAP 160
           GI +LH      I+H D+KP NI++    T KILDFGLA+     F++      + Y AP
Sbjct: 131 GIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAP 187
Query: 161 ECYKRTPISVKADVYGYGIVLLETI 185
           E           D++  G ++ E +
Sbjct: 188 EVILGMGYKENVDIWSVGCIMGEMV 212

>pdb|3RNY|A Chain A, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain Length = 346

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 16/143 (11%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVR--IALDVAKGILYLHDECEPPILHCDIKPQNIL-M 127
           +R G L D I     R  ++++R    +   + K + YLH +    ++H D+KP NIL +
Sbjct: 103 MRGGELLDKIL----RQKFFSEREASFVLHTIGKTVEYLHSQG---VVHRDLKPSNILYV 155
Query: 128 DEFWTA---KILDFGLAK---LPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVL 181
           DE       +I DFG AK     N   +       ++APE  KR       D++  GI+L
Sbjct: 156 DESGNPECLRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLKRQGYDEGCDIWSLGILL 215
Query: 182 LETICCRKNMEIDASKPEEIILT 204
              +          S   E ILT
Sbjct: 216 YTMLAGYTPFANGPSDTPEEILT 238

>pdb|3OEF|X Chain X, Crystal Structure Of Y323f Inactive Mutant Of P38alpha Map Kinase Length = 360

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 134 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRA 190
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 191 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 220

>pdb|3K3J|A Chain A, P38alpha Bound To Novel Dfg-Out Compound Pf-00416121 Length = 362

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 136 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRA 192
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 193 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 222

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
           Q V +   +A G+ YL D      +H D+  +NIL++     K+ DFGL+++  +D    
Sbjct: 148 QLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAA 204
Query: 152 KRDKG------YMAPECYKRTPISVKADVYGYGIVLLETIC 186
              +G      + +PE       +  +DV+ YGIVL E + 
Sbjct: 205 YTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 245

>pdb|2NPQ|A Chain A, A Novel Lipid Binding Site In The P38 Alpha Map Kinase Length = 367

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 141 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRA 197
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 198 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 227

>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
           Q V +   +A G+ YL D      +H D+  +NIL++     K+ DFGL+++  +D    
Sbjct: 148 QLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAA 204
Query: 152 KRDKG------YMAPECYKRTPISVKADVYGYGIVLLETIC 186
              +G      + +PE       +  +DV+ YGIVL E + 
Sbjct: 205 YTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 245

>pdb|3OHT|A Chain A, Crystal Structure Of Salmo Salar P38alpha Length = 389

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 16/96 (16%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++        GY+A
Sbjct: 163 ILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMT------GYVA 213
Query: 160 PECYKRTPI-------SVKADVYGYGIVLLETICCR 188
              Y+   I       ++  D++  G ++ E +  R
Sbjct: 214 TRWYRAPEIMLNWMHYNMTVDIWSVGCIMAELLTGR 249

>pdb|3D7Z|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 134 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRA 190
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 191 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 220

>pdb|2BAJ|A Chain A, P38alpha Bound To Pyrazolourea Length = 365

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 139 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRA 195
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 196 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 225

>pdb|3MPT|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Pyrrole-2- Carboxamide Inhibitor Length = 371

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 145 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRA 201
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 202 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 231

>pdb|3KQ7|A Chain A, Structure Of Human P38alpha With N-[4-Methyl-3-(6-{[2-(1- Methylpyrrolidin-2-Yl)ethyl]amino}pyridine-3- Amido)phenyl]- 2-(Morpholin-4-Yl)pyridine-4-Carboxamide Length = 380

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 154 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRA 210
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 211 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 240

>pdb|3HRB|A Chain A, P38 Kinase Crystal Structure In Complex With Small Molecule Inhibitor Length = 359

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 133 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRA 189
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 190 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 219

>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
           Q V +   +A G+ YL D      +H D+  +NIL++     K+ DFGL+++  +D    
Sbjct: 148 QLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAA 204
Query: 152 KRDKG------YMAPECYKRTPISVKADVYGYGIVLLETIC 186
              +G      + +PE       +  +DV+ YGIVL E + 
Sbjct: 205 YTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 245

>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
           Q V +   +A G+ YL D      +H D+  +NIL++     K+ DFGL+++  +D    
Sbjct: 148 QLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAA 204
Query: 152 KRDKG------YMAPECYKRTPISVKADVYGYGIVLLETIC 186
              +G      + +PE       +  +DV+ YGIVL E + 
Sbjct: 205 YTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 245

>pdb|1DI9|A Chain A, The Structure Of P38 Mitogen-Activated Protein Kinase In Complex With 4-[3-Methylsulfanylanilino]-6,7- Dimethoxyquinazoline Length = 360

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 134 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRA 190
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 191 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 220

>pdb|1LEW|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The Docking Site On Its Nuclear Substrate Mef2a Length = 360

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 134 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRA 190
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 191 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 220

>pdb|3GCU|A Chain A, Human P38 Map Kinase In Complex With Rl48 Length = 360

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 134 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRA 190
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 191 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 220

>pdb|2I0E|A Chain A, Structure Of Catalytic Domain Of Human Protein Kinase C Beta Ii Complexed With A Bisindolylmaleimide Inhibitor Length = 353

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 8/134 (5%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR 153
           V  A ++A G+ +L  +    I++ D+K  N+++D     KI DFG+ K    D V  K 
Sbjct: 124 VFYAAEIAIGLFFLQSKG---IIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKX 180
Query: 154 DKG---YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKP--EEIILTNWVY 208
             G   Y+APE     P     D + +G++L E +  +   E +      + I+  N  Y
Sbjct: 181 FCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAY 240
Query: 209 KCFINRELNKLVRG 222
              +++E   + +G
Sbjct: 241 PKSMSKEAVAICKG 254

>pdb|3ZSG|A Chain A, X-Ray Structure Of P38alpha Bound To Tak-715 Length = 362

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 136 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRA 192
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 193 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 222

>pdb|3S3I|A Chain A, P38 Kinase Crystal Structure In Complex With Small Molecule Inhibitor Length = 349

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 131 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRA 187
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 188 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 217

>pdb|2LGC|A Chain A, Joint Nmr And X-Ray Refinement Reveals The Structure Of A Novel Dibenzo[a,D]cycloheptenone InhibitorP38 MAP KINASE COMPLEX IN Solution Length = 359

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 139 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRA 195
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 196 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 225

>pdb|3K3I|A Chain A, P38alpha Bound To Novel Dgf-Out Compound Pf-00215955 Length = 350

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 132 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRA 188
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 189 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 218

>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
           Q V +   +A G+ YL D      +H D+  +NIL++     K+ DFGL+++  +D    
Sbjct: 146 QLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAA 202
Query: 152 KRDKG------YMAPECYKRTPISVKADVYGYGIVLLETIC 186
              +G      + +PE       +  +DV+ YGIVL E + 
Sbjct: 203 YTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 243

>pdb|2EXC|X Chain X, Inhibitor Complex Of Jnk3 Length = 356

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAP 160
           GI +LH      I+H D+KP NI++    T KILDFGLA+     F++      + Y AP
Sbjct: 132 GIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAP 188
Query: 161 ECYKRTPISVKADVYGYGIVLLETI 185
           E           D++  G ++ E +
Sbjct: 189 EVILGMGYKENVDIWSVGCIMGEMV 213

>pdb|1BL6|A Chain A, The Complex Structure Of The Map Kinase P38SB216995 Length = 379

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 153 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRA 209
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 210 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 239

>pdb|3HEC|A Chain A, P38 In Complex With Imatinib Length = 348

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 130 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRA 186
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 187 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 216

>pdb|3DT1|A Chain A, P38 Complexed With A Quinazoline Inhibitor Length = 383

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 157 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRA 213
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 214 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 243

>pdb|3HVC|A Chain A, Crystal Structure Of Human P38alpha Map Kinase Length = 362

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 136 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRA 192
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 193 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 222

>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast Snf1 Length = 274

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 115 ILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAPECYK-RTPISVK 171
           I+H D+KP+N+L+DE    KI DFGL+ +  +   +        Y APE    +     +
Sbjct: 128 IVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVISGKLYAGPE 187
Query: 172 ADVYGYGIVLLETICCR 188
            DV+  G++L   +C R
Sbjct: 188 VDVWSCGVILYVMLCRR 204

>pdb|3P4K|A Chain A, The Third Conformation Of P38a Map Kinase Observed In Phosphorylated P38a And In Solution Length = 370

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 144 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRA 200
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 201 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 230

>pdb|3NNU|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp1376 Length = 354

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 134 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRA 190
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 191 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 220

>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of The Saccharomyces Cerevisiae Ampk Homolog Snf1 Length = 271

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 115 ILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAPECYK-RTPISVK 171
           I+H D+KP+N+L+DE    KI DFGL+ +  +   +        Y APE    +     +
Sbjct: 124 IVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVISGKLYAGPE 183
Query: 172 ADVYGYGIVLLETICCR 188
            DV+  G++L   +C R
Sbjct: 184 VDVWSCGVILYVMLCRR 200

>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium Parvum Calcium Dependent Protein Kinase In Complex With 3- Mb-Pp1 Length = 287

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT---AKILDFGLAKLPNEDFVI 150
            RI   V  GI Y+H   +  I+H D+KP+NIL++        KI+DFGL+    ++  +
Sbjct: 124 ARIIKQVFSGITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKM 180
Query: 151 DKR--DKGYMAPECYKRTPISVKADVYGYGIVL 181
             R     Y+APE  + T    K DV+  G++L
Sbjct: 181 KDRIGTAYYIAPEVLRGT-YDEKCDVWSAGVIL 212

>pdb|3TG1|A Chain A, Crystal Structure Of P38alpha In Complex With A Mapk Docking Partner Length = 380

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 154 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRA 210
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 211 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 240

>pdb|2XS0|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin Antagonistically Control The Nuclear Shuttling Of Nfat4 Length = 386

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAP 160
           GI +LH      I+H D+KP NI++    T KILDFGLA+     F++      + Y AP
Sbjct: 140 GIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMVPFVVTRYYRAP 196
Query: 161 ECYKRTPISVKADVYGYGIVLLETI 185
           E           D++  G ++ E I
Sbjct: 197 EVILGMGYKENVDIWSVGCIMGEMI 221

>pdb|2X4F|A Chain A, The Crystal Structure Of The Human Myosin Light Chain Kinase Loc340156. Length = 373

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNIL--MDEFWTAKILDFGLAKL--PNEDFVIDKRDK 155
           + +GI ++H   +  ILH D+KP+NIL    +    KI+DFGLA+   P E   ++    
Sbjct: 196 ICEGIRHMH---QMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREKLKVNFGTP 252
Query: 156 GYMAPECYKRTPISVKADVYGYGIV 180
            ++APE      +S   D++  G++
Sbjct: 253 EFLAPEVVNYDFVSFPTDMWSVGVI 277

>pdb|1M7Q|A Chain A, Crystal Structure Of P38 Map Kinase In Complex With A Dihydroquinazolinone Inhibitor Length = 366

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 140 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRA 196
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 197 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 226

>pdb|1BMK|A Chain A, The Complex Structure Of The Map Kinase P38SB218655 Length = 379

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 153 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRA 209
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 210 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 239

>pdb|1ZZL|A Chain A, Crystal Structure Of P38 With Triazolopyridine Length = 351

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 131 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRA 187
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 188 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 217

>pdb|1YWR|A Chain A, Crystal Structure Analysis Of Inactive P38 Kinase Domain In Complex With A Monocyclic Pyrazolone Inhibitor Length = 360

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 134 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMAGFVATRWYRA 190
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 191 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 220

>pdb|2YA9|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2 Length = 361

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 13/117 (11%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNI-LMDE 129
           V  G L D  F + + +    +       +  G+ YLH +    I H D+KP+NI L+D+
Sbjct: 97  VSGGELFD--FLAQKESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDK 151
Query: 130 ---FWTAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIV 180
                  K++DFGLA    ED V  K   G   ++APE     P+ ++AD++  G++
Sbjct: 152 NIPIPHIKLIDFGLAH-EIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVI 207

>pdb|2PUU|A Chain A, Crystal Structure Of P38 Complex With 1-(5-Tert-Butyl-2-P- Tolyl-2h-Pyrazol-3-Yl)-3-[4-(6-Morpholin-4-Ylmethyl- Pyridin-3-Yl)naphthalen-1-Yl]urea Length = 348

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 130 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRA 186
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 187 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 216

>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
           Q V +   +A G+ YL D      +H D+  +NIL++     K+ DFGL ++  +D    
Sbjct: 148 QLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAA 204
Query: 152 KRDKG------YMAPECYKRTPISVKADVYGYGIVLLETIC 186
              +G      + +PE       +  +DV+ YGIVL E + 
Sbjct: 205 YTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS 245

>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent Protein Kinase Cgd3_920 From Cryptosporidium Parvum Length = 286

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT---AKILDFGLAKLPNEDFVI 150
            RI   V  GI Y+H   +  I+H D+KP+NIL++        KI+DFGL+    ++  +
Sbjct: 124 ARIIKQVFSGITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKM 180
Query: 151 DKR--DKGYMAPECYKRTPISVKADVYGYGIVL 181
             R     Y+APE  + T    K DV+  G++L
Sbjct: 181 KDRIGTAYYIAPEVLRGT-YDEKCDVWSAGVIL 212

>pdb|2GTM|A Chain A, Mutated Mouse P38 Map Kinase Domain In Complex With Inhibitor Pg-892579 Length = 348

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 130 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRA 186
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 187 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 216

>pdb|1YW2|A Chain A, Mutated Mus Musculus P38 Kinase (Mp38) Length = 360

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 134 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMAGFVATRWYRA 190
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 191 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 220

>pdb|1Z9X|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form With 3 Monomers In The Asymmetric Unit Length = 321

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 13/117 (11%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNI-LMDE 129
           V  G L D  F + + +    +       +  G+ YLH +    I H D+KP+NI L+D+
Sbjct: 97  VSGGELFD--FLAQKESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDK 151
Query: 130 ---FWTAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIV 180
                  K++DFGLA    ED V  K   G   ++APE     P+ ++AD++  G++
Sbjct: 152 NIPIPHIKLIDFGLAH-EIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVI 207

>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 13/142 (9%)
Query: 51  LLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDE 110
           L  V  R +L  +   +   + NGSL D    + +      Q V +   V  G+ YL D 
Sbjct: 115 LEGVVTRGRLAMI---VTEYMENGSL-DTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDL 170
Query: 111 CEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG------YMAPECYK 164
                +H D+  +N+L+D     K+ DFGL+++  +D        G      + APE   
Sbjct: 171 G---YVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIA 227
Query: 165 RTPISVKADVYGYGIVLLETIC 186
               S  +DV+ +G+V+ E + 
Sbjct: 228 FRTFSSASDVWSFGVVMWEVLA 249

>pdb|2A2A|A Chain A, High-resolution Crystallographic Analysis Of The Autoinhibited Conformation Of A Human Death-associated Protein Kinase Length = 321

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 13/117 (11%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNI-LMDE 129
           V  G L D  F + + +    +       +  G+ YLH +    I H D+KP+NI L+D+
Sbjct: 97  VSGGELFD--FLAQKESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDK 151
Query: 130 ---FWTAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIV 180
                  K++DFGLA    ED V  K   G   ++APE     P+ ++AD++  G++
Sbjct: 152 NIPIPHIKLIDFGLAH-EIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVI 207

>pdb|2A27|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form With 8 Monomers In The Asymmetric Unit Length = 321

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 13/117 (11%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNI-LMDE 129
           V  G L D  F + + +    +       +  G+ YLH +    I H D+KP+NI L+D+
Sbjct: 97  VSGGELFD--FLAQKESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDK 151
Query: 130 ---FWTAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIV 180
                  K++DFGLA    ED V  K   G   ++APE     P+ ++AD++  G++
Sbjct: 152 NIPIPHIKLIDFGLAH-EIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVI 207

>pdb|4EWQ|A Chain A, Human P38 Alpha Mapk In Complex With A Pyridazine Based Inhibitor Length = 383

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 157 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMXGYVATRWYRA 213
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 214 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 243

>pdb|2OZA|B Chain B, Structure Of P38alpha Complex Length = 366

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 140 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRA 196
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 197 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 226

>pdb|2GHL|A Chain A, Mutant Mus Musculus P38 Kinase Domain In Complex With Inhibitor Pg-874743 Length = 348

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 130 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMAGFVATRWYRA 186
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 187 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 216

>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With Ind E804 Length = 324

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 98  LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK---LPNEDFVIDKRD 154
             + +G+ Y H +    +LH D+KPQN+L++E    K+ DFGLA+   +P + +  +   
Sbjct: 107 FQLLRGLAYCHRQ---KVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYDNEVVT 163
Query: 155 KGYMAPE-CYKRTPISVKADVYGYGIVLLETICCR 188
             Y  P+     T  S + D++G G +  E    R
Sbjct: 164 LWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGR 198

>pdb|1WMK|A Chain A, Human Death-Associated Kinase Drp-1, Mutant S308d D40 Length = 321

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 13/117 (11%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNI-LMDE 129
           V  G L D  F + + +    +       +  G+ YLH +    I H D+KP+NI L+D+
Sbjct: 97  VSGGELFD--FLAQKESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDK 151
Query: 130 ---FWTAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIV 180
                  K++DFGLA    ED V  K   G   ++APE     P+ ++AD++  G++
Sbjct: 152 NIPIPHIKLIDFGLAH-EIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVI 207

>pdb|1IAN|A Chain A, Human P38 Map Kinase Inhibitor Complex Length = 366

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  +++       + Y A
Sbjct: 140 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRA 196
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 197 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 226

>pdb|2WNT|A Chain A, Crystal Structure Of The Human Ribosomal Protein S6 Kinase Length = 330

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 16/143 (11%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVR--IALDVAKGILYLHDECEPPILHCDIKPQNIL-M 127
           +R G L D I     R  ++++R    +   + K + YLH +    ++H D+KP NIL +
Sbjct: 103 MRGGELLDKIL----RQKFFSEREASFVLHTIGKTVEYLHSQG---VVHRDLKPSNILYV 155
Query: 128 DEFWTA---KILDFGLAK---LPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVL 181
           DE       +I DFG AK     N   +       ++APE  KR       D++  GI+L
Sbjct: 156 DESGNPECLRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLKRQGYDEGCDIWSLGILL 215
Query: 182 LETICCRKNMEIDASKPEEIILT 204
              +          S   E ILT
Sbjct: 216 YTMLAGYTPFANGPSDTPEEILT 238

>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target Length = 303

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 99  DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKL--PNEDFVIDKRDKG 156
           +V +G+ YLH   +   +H D+K  NIL+ E  + +I DFG++       D   +K  K 
Sbjct: 129 EVLEGLEYLHKNGQ---IHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKT 185
Query: 157 Y------MAPECYKRT-PISVKADVYGYGIVLLE 183
           +      MAPE  ++      KAD++ +GI  +E
Sbjct: 186 FVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIE 219

>pdb|1ZWS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Drp-1 Kinase Length = 288

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 13/117 (11%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNI-LMDE 129
           V  G L D  F + + +    +       +  G+ YLH +    I H D+KP+NI L+D+
Sbjct: 97  VSGGELFD--FLAQKESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDK 151
Query: 130 ---FWTAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIV 180
                  K++DFGLA    ED V  K   G   ++APE     P+ ++AD++  G++
Sbjct: 152 NIPIPHIKLIDFGLAH-EIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVI 207

>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain Length = 290

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 99  DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKL--PNEDFVIDKRDKG 156
           +V +G+ YLH   +   +H D+K  NIL+ E  + +I DFG++       D   +K  K 
Sbjct: 124 EVLEGLEYLHKNGQ---IHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKT 180
Query: 157 Y------MAPECYKRT-PISVKADVYGYGIVLLE 183
           +      MAPE  ++      KAD++ +GI  +E
Sbjct: 181 FVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIE 214

>pdb|3FPQ|A Chain A, Crystal Structure Of The Kinase Domain Of Wnk1 Length = 290

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILM-DEFWTAKILDFGLAKLPNEDF---VIDKRDK 155
           + KG+ +LH    PPI+H D+K  NI +     + KI D GLA L    F   VI   + 
Sbjct: 138 ILKGLQFLHTRT-PPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPE- 195
Query: 156 GYMAPECYKRTPISVKADVYGYGIVLLE 183
            + APE Y+        DVY +G   LE
Sbjct: 196 -FXAPEXYEE-KYDESVDVYAFGXCXLE 221

>pdb|3CJF|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 3,4,5-Trimethoxy Aniline Containing Pyrimidine Length = 309

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK--LPNEDFVID 151
           +  +  VAKG+ +L        +H D+  +NIL+ E    KI DFGLA+    + D+V  
Sbjct: 147 IXYSFQVAKGMEFL---ASRKXIHRDLAARNILLSEKNVVKIXDFGLARDIYKDPDYVRK 203
Query: 152 KRDK---GYMAPECYKRTPISVKADVYGYGIVLLETIC 186
              +    +MAPE       ++++DV+ +G++L E   
Sbjct: 204 GDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFS 241

>pdb|3G0F|A Chain A, Kit Kinase Domain Mutant D816h In Complex With Sunitinib Length = 336

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%)
Query: 96  IALDVAKGILYLHDE-CEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED--FVIDK 152
            +  VAKG+ +L  + C    +H D+  +NIL+      KI DFGLA+    D  +V+  
Sbjct: 173 FSYQVAKGMAFLASKNC----IHRDLAARNILLTHGRITKICDFGLARHIKNDSNYVVKG 228
Query: 153 RDK---GYMAPECYKRTPISVKADVYGYGIVLLE 183
             +    +MAPE       + ++DV+ YGI L E
Sbjct: 229 NARLPVKWMAPESIFNCVYTFESDVWSYGIFLWE 262

>pdb|2FSL|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s) Activating Mutant Form-A Length = 367

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+   ++       + Y A
Sbjct: 141 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTADEMTGYVATRWYRA 197
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 198 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 227

>pdb|2FSO|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a) Activating Mutant Length = 367

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+   ++       + Y A
Sbjct: 141 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTADEMTGYVATRWYRA 197
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 198 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 227

>pdb|1HOW|A Chain A, The X-Ray Crystal Structure Of Sky1p, An Sr Protein Kinase In Yeast Length = 373

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILM------DEFWTAKILDFGLAKLPNEDF 148
           +I+  +  G+ Y+H  C   I+H DIKP+N+LM      +     KI D G A   +E +
Sbjct: 135 QISKQLLLGLDYMHRRC--GIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHY 192
Query: 149 VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC 186
               + + Y +PE     P    AD++    ++ E I 
Sbjct: 193 TNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELIT 230

>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5) Length = 295

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
           Q V +   ++ G+ YL D      +H D+  +NIL++     K+ DFGL+++  +D    
Sbjct: 125 QLVGMLRGISAGMKYLSDMG---YVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAA 181
Query: 152 KRDKG------YMAPECYKRTPISVKADVYGYGIVLLETIC 186
              +G      + APE       +  +DV+ YGIV+ E + 
Sbjct: 182 YTTRGGKIPIRWTAPEAIAFRKFTSASDVWSYGIVMWEVVS 222

>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal Sh3 Domain Length = 341

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-LPNED--FVID 151
           R A+ VA+G+ YL  +     +H D+  +N+L+      KI DFGL + LP  D  +V+ 
Sbjct: 119 RYAVQVAEGMGYLESKR---FIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQ 175
Query: 152 KRDK---GYMAPECYKRTPISVKADVYGYGIVLLETIC 186
           +  K    + APE  K    S  +D + +G+ L E   
Sbjct: 176 EHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFT 213

>pdb|1Q8Y|A Chain A, The Structure Of The Yeast Sr Protein Kinase, Sky1p, With Bound Adp Length = 373

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILM------DEFWTAKILDFGLAKLPNEDF 148
           +I+  +  G+ Y+H  C   I+H DIKP+N+LM      +     KI D G A   +E +
Sbjct: 135 QISKQLLLGLDYMHRRC--GIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHY 192
Query: 149 VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC 186
               + + Y +PE     P    AD++    ++ E I 
Sbjct: 193 TNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELIT 230

>pdb|2FST|X Chain X, Mitogen Activated Protein Kinase P38alpha (d176a+f327l) Activating Mutant Length = 367

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+   ++       + Y A
Sbjct: 141 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTADEMTGYVATRWYRA 197
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 198 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 227

>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5 Length = 288

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 98  LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK---LPNEDFVIDKRD 154
           L +  GI Y HD     +LH D+KPQN+L++     KI DFGLA+   +P   +  +   
Sbjct: 107 LQLLNGIAYCHDRR---VLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEVVT 163
Query: 155 KGYMAPECYKRT-PISVKADVYGYGIVLLETI 185
             Y AP+    +   S   D++  G +  E +
Sbjct: 164 LWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMV 195

>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate Ligand Complex Length = 288

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 98  LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK---LPNEDFVIDKRD 154
           L +  GI Y HD     +LH D+KPQN+L++     KI DFGLA+   +P   +  +   
Sbjct: 107 LQLLNGIAYCHDRR---VLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEVVT 163
Query: 155 KGYMAPECYKRT-PISVKADVYGYGIVLLETI 185
             Y AP+    +   S   D++  G +  E +
Sbjct: 164 LWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMV 195

>pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma Length = 367

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 14/93 (15%)
Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMAPE 161
           KG+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  + +       + Y APE
Sbjct: 139 KGLRYIHAAG---IIHRDLKPGNLAVNEDCELKILDFGLARQADSEMXGXVVTRWYRAPE 195
Query: 162 C------YKRTPISVKADVYGYGIVLLETICCR 188
                  Y +T      D++  G ++ E I  +
Sbjct: 196 VILNWMRYTQT-----VDIWSVGCIMAEMITGK 223

>pdb|2XUU|A Chain A, Crystal Structure Of A Dap-Kinase 1 Mutant Length = 334

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 15/118 (12%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           V  G L D  F + + +    +       +  G+ YLH      I H D+KP+NI++ + 
Sbjct: 96  VAGGELFD--FLAEKESLTEEEATEFLKQILNGVYYLHS---LQIAHFDLKPENIMLLDR 150
Query: 131 WTAK----ILDFGLAKLPNEDFVIDKRD----KGYMAPECYKRTPISVKADVYGYGIV 180
              K    I+DFGLA     DF  + ++      ++APE     P+ ++AD++  G++
Sbjct: 151 NVPKPRIKIIDFGLAH--KIDFGNEFKNIFGTPAFVAPEIVNYEPLGLEADMWSIGVI 206

>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain Length = 291

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
           Q V +   +  G+ YL D      +H D+  +NIL++     K+ DFG++++  +D    
Sbjct: 117 QLVGMLRGIGSGMKYLSDMS---YVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAA 173
Query: 152 KRDKG------YMAPECYKRTPISVKADVYGYGIVLLETI 185
              +G      + APE       +  +DV+ YGIV+ E +
Sbjct: 174 YTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVM 213

>pdb|4HZR|A Chain A, Crystal Structure Of Ack1 Kinase Domain Length = 277

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-LPNED--FVID 151
           R A+ VA+G+ YL  +     +H D+  +N+L+      KI DFGL + LP  D  +V+ 
Sbjct: 119 RYAVQVAEGMGYLESK---RFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQ 175
Query: 152 KRDK---GYMAPECYKRTPISVKADVYGYGIVLLETIC 186
           +  K    + APE  K    S  +D + +G+ L E   
Sbjct: 176 EHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFT 213

>pdb|1PKG|A Chain A, Structure Of A C-kit Kinase Product Complex Length = 329

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 96  IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED--FVIDKR 153
            +  VAKG+ +L  +     +H D+  +NIL+      KI DFGLA+    D  +V+   
Sbjct: 166 FSYQVAKGMAFLASK---NCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGN 222
Query: 154 DK---GYMAPECYKRTPISVKADVYGYGIVLLE 183
            +    +MAPE       + ++DV+ YGI L E
Sbjct: 223 ARLPVKWMAPESIFNCVYTFESDVWSYGIFLWE 255

>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5 Length = 288

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 98  LDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK---LPNEDFVIDKRD 154
           L +  GI Y HD     +LH D+KPQN+L++     KI DFGLA+   +P   +  +   
Sbjct: 107 LQLLNGIAYCHDRR---VLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVT 163
Query: 155 KGYMAPECYKRT-PISVKADVYGYGIVLLETI 185
             Y AP+    +   S   D++  G +  E +
Sbjct: 164 LWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMV 195

>pdb|3SA0|A Chain A, Complex Of Erk2 With Norathyriol Length = 360

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      +LH D+KP N+L++     KI DFGLA++ + D         Y+A
Sbjct: 133 ILRGLKYIHSAN---VLHRDLKPSNLLLNTTXDLKIXDFGLARVADPDHDHTGFLTEYVA 189
Query: 160 PECYKRTPISVKA-------DVYGYGIVLLETICCR 188
              Y+   I + +       D++  G +L E +  R
Sbjct: 190 TRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNR 225

>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights Into Receptor Autoregulation Length = 343

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK--LPNEDFV 149
           +++ IA  VA G+ YL    E   +H D+  +N L+ E    KI DFGL++     + + 
Sbjct: 175 EQLCIARQVAAGMAYLS---ERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYK 231
Query: 150 IDKRDK---GYMAPECYKRTPISVKADVYGYGIVLLE 183
            D  D     +M PE       + ++DV+ YG+VL E
Sbjct: 232 ADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWE 268

>pdb|3QD2|B Chain B, Crsytal Structure Of Mouse Perk Kinase Domain Length = 332

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 18/107 (16%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED------ 147
           + I + +A+ + +LH +    ++H D+KP NI        K+ DFGL    ++D      
Sbjct: 167 LHIFIQIAEAVEFLHSKG---LMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTV 223
Query: 148 ------FVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETI 185
                 +       G   YM+PE       S K D++  G++L E +
Sbjct: 224 LTPMPAYATHXGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELL 270

>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point Mutations (K299r, T423e) Length = 297

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 19/121 (15%)
Query: 73  NGSLTDIIF--CSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
            GSLTD++   C  E      Q   +  +  + + +LH      ++H DIK  NIL+   
Sbjct: 101 GGSLTDVVTETCMDE-----GQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMD 152
Query: 131 WTAKILDFGL-AKLPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLET 184
            + K+ DFG  A++  E     KR +      +MAPE   R     K D++  GI+ +E 
Sbjct: 153 GSVKLTDFGFCAQITPEQ---SKRSEMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEM 209
Query: 185 I 185
           I
Sbjct: 210 I 210

>pdb|3C7Q|A Chain A, Structure Of Vegfr2 Kinase Domain In Complex With Bibf1120 Length = 316

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 12/97 (12%)
Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR 153
           +  +  VAKG+ +L        +H D+  +NIL+ E    KI DFGLA+   +D   D  
Sbjct: 151 IXYSFQVAKGMEFL---ASRKXIHRDLAARNILLSEKNVVKICDFGLARDIXKD--PDXV 205
Query: 154 DKG-------YMAPECYKRTPISVKADVYGYGIVLLE 183
            KG       +MAPE       ++++DV+ +G++L E
Sbjct: 206 RKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWE 242

>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With Vuf 12058 Length = 285

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
           Q V +   +  G+ YL D      +H D+  +NIL++     K+ DFG++++  +D    
Sbjct: 111 QLVGMLRGIGSGMKYLSDMS---YVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAA 167
Query: 152 KRDKG------YMAPECYKRTPISVKADVYGYGIVLLETI 185
              +G      + APE       +  +DV+ YGIV+ E +
Sbjct: 168 YTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVM 207

>pdb|3MH2|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILD+GLA+  +++       + Y A
Sbjct: 134 ILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDYGLARHTDDEMTGYVATRWYRA 190
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 191 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 220

>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a) Length = 306

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
           Q V +   +  G+ YL D      +H D+  +NIL++     K+ DFG++++  +D    
Sbjct: 132 QLVGMLRGIGSGMKYLSDMSA---VHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAA 188
Query: 152 KRDKG------YMAPECYKRTPISVKADVYGYGIVLLETI 185
              +G      + APE       +  +DV+ YGIV+ E +
Sbjct: 189 YTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVM 228

>pdb|1T45|A Chain A, Structural Basis For The Autoinhibition And Sti-571 Inhibition Of C- Kit Tyrosine Kinase Length = 331

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%)
Query: 96  IALDVAKGILYLHDE-CEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED--FVIDK 152
            +  VAKG+ +L  + C    +H D+  +NIL+      KI DFGLA+    D  +V+  
Sbjct: 168 FSYQVAKGMAFLASKNC----IHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKG 223
Query: 153 RDK---GYMAPECYKRTPISVKADVYGYGIVLLE 183
             +    +MAPE       + ++DV+ YGI L E
Sbjct: 224 NARLPVKWMAPESIFNCVYTFESDVWSYGIFLWE 257

>pdb|2P2H|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyridinyl-Triazine Inhibitor Length = 314

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 12/94 (12%)
Query: 97  ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG 156
           +  VAKG+ +L        +H D+  +NIL+ E    KI DFGLA+   +D   D   KG
Sbjct: 145 SFQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLARDIXKD--PDXVRKG 199
Query: 157 -------YMAPECYKRTPISVKADVYGYGIVLLE 183
                  +MAPE       ++++DV+ +G++L E
Sbjct: 200 DARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWE 233

>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5- Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6- Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide Length = 325

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 50/120 (41%), Gaps = 15/120 (12%)
Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           G   D +    ER    +Q   +       + YLHD     I+H D+K  NIL       
Sbjct: 118 GGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHDN---KIIHRDLKAGNILFTLDGDI 174
Query: 134 KILDFGLAKLPNEDFVIDKRDKG-----YMAPECY-----KRTPISVKADVYGYGIVLLE 183
           K+ DFG++        I +RD       +MAPE       K  P   KADV+  GI L+E
Sbjct: 175 KLADFGVSAKNTR--TIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIE 232

>pdb|1U46|A Chain A, Crystal Structure Of The Unphosphorylated Kinase Domain Of The Tyrosine Kinase Ack1 Length = 291

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-LPNED--FVID 151
           R A+ VA+G+ YL  +     +H D+  +N+L+      KI DFGL + LP  D  +V+ 
Sbjct: 125 RYAVQVAEGMGYLESKR---FIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQ 181
Query: 152 KRDK---GYMAPECYKRTPISVKADVYGYGIVLLETIC 186
           +  K    + APE  K    S  +D + +G+ L E   
Sbjct: 182 EHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFT 219

>pdb|2P2I|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Nicotinamide Inhibitor Length = 314

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 12/94 (12%)
Query: 97  ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG 156
           +  VAKG+ +L        +H D+  +NIL+ E    KI DFGLA+   +D   D   KG
Sbjct: 145 SFQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLARDIXKD--PDXVRKG 199
Query: 157 -------YMAPECYKRTPISVKADVYGYGIVLLE 183
                  +MAPE       ++++DV+ +G++L E
Sbjct: 200 DARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWE 233

>pdb|1T46|A Chain A, Structural Basis For The Autoinhibition And Sti-571 Inhibition Of C-kit Tyrosine Kinase Length = 313

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 96  IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED--FVIDKR 153
            +  VAKG+ +L  +     +H D+  +NIL+      KI DFGLA+    D  +V+   
Sbjct: 150 FSYQVAKGMAFLASK---NCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGN 206
Query: 154 DK---GYMAPECYKRTPISVKADVYGYGIVLLE 183
            +    +MAPE       + ++DV+ YGI L E
Sbjct: 207 ARLPVKWMAPESIFNCVYTFESDVWSYGIFLWE 239

>pdb|4ID7|A Chain A, Ack1 Kinase In Complex With The Inhibitor Cis-3-[8-amino-1-(4- Phenoxyphenyl)imidazo[1,5-a]pyrazin-3-yl]cyclobutanol Length = 273

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-LPNED--FVID 151
           R A+ VA+G+ YL  +     +H D+  +N+L+      KI DFGL + LP  D  +V+ 
Sbjct: 115 RYAVQVAEGMGYLESK---RFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQ 171
Query: 152 KRDK---GYMAPECYKRTPISVKADVYGYGIVLLETIC 186
           +  K    + APE  K    S  +D + +G+ L E   
Sbjct: 172 EHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFT 209

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 96  IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED-FVIDKRD 154
           +A  ++  + YL  +     +H D+  +N L+ E    K+ DFGL++L   D F      
Sbjct: 114 MATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTFTAHAGA 170
Query: 155 K---GYMAPECYKRTPISVKADVYGYGIVLLE 183
           K    + APE       S+K+DV+ +G++L E
Sbjct: 171 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWE 202

>pdb|2IWI|A Chain A, Crystal Structure Of The Human Pim2 In Complex With A Ruthenium Organometallic Ligand Ru1 Length = 312

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 14/159 (8%)
Query: 67  IERPVRNGSLTDIIFCSAERNPYWNQRVRIAL-DVAKGILYLHDECEPPILHCDIKPQNI 125
           +ERP+    L D I    E+ P      R     V   I + H      ++H DIK +NI
Sbjct: 117 LERPLPAQDLFDYI---TEKGPLGEGPSRCFFGQVVAAIQHCHSRG---VVHRDIKDENI 170
Query: 126 LMD-EFWTAKILDFGLAKLPNEDFVID-KRDKGYMAPECYKRTPI-SVKADVYGYGIVLL 182
           L+D     AK++DFG   L +++   D    + Y  PE   R    ++ A V+  GI+L 
Sbjct: 171 LIDLRRGCAKLIDFGSGALLHDEPYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLY 230
Query: 183 ETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR 221
           + +C     E D    +EI+     +   ++ +   L+R
Sbjct: 231 DMVCGDIPFERD----QEILEAELHFPAHVSPDCCALIR 265

>pdb|3EQP|B Chain B, Crystal Structure Of Ack1 With Compound T95 Length = 276

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-LPNED--FVID 151
           R A+ VA+G+ YL  +     +H D+  +N+L+      KI DFGL + LP  D  +V+ 
Sbjct: 115 RYAVQVAEGMGYLESKR---FIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQ 171
Query: 152 KRDK---GYMAPECYKRTPISVKADVYGYGIVLLETIC 186
           +  K    + APE  K    S  +D + +G+ L E   
Sbjct: 172 EHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFT 209

>pdb|3G0E|A Chain A, Kit Kinase Domain In Complex With Sunitinib Length = 336

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%)
Query: 96  IALDVAKGILYLHDE-CEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED--FVIDK 152
            +  VAKG+ +L  + C    +H D+  +NIL+      KI DFGLA+    D  +V+  
Sbjct: 173 FSYQVAKGMAFLASKNC----IHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKG 228
Query: 153 RDK---GYMAPECYKRTPISVKADVYGYGIVLLE 183
             +    +MAPE       + ++DV+ YGI L E
Sbjct: 229 NARLPVKWMAPESIFNCVYTFESDVWSYGIFLWE 262

>pdb|3U6J|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyrazolone Inhibitor Length = 314

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Query: 97  ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK--LPNEDFVIDKRD 154
           +  VAKG+ +L        +H D+  +NIL+ E    KI DFGLA+    + D+V     
Sbjct: 145 SFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDA 201
Query: 155 K---GYMAPECYKRTPISVKADVYGYGIVLLE 183
           +    +MAPE       ++++DV+ +G++L E
Sbjct: 202 RLPLKWMAPETIFDRVYTIQSDVWSFGVLLWE 233

>pdb|3EWH|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyridyl-Pyrimidine Benzimidazole Inhibitor Length = 314

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Query: 97  ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK--LPNEDFVIDKRD 154
           +  VAKG+ +L        +H D+  +NIL+ E    KI DFGLA+    + D+V     
Sbjct: 145 SFQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDA 201
Query: 155 K---GYMAPECYKRTPISVKADVYGYGIVLLE 183
           +    +MAPE       ++++DV+ +G++L E
Sbjct: 202 RLPLKWMAPETIFDRVYTIQSDVWSFGVLLWE 233

>pdb|3CJG|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 3,4,5-Trimethoxy Aniline Containing Pyrimidine Length = 309

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Query: 97  ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK--LPNEDFVIDKRD 154
           +  VAKG+ +L        +H D+  +NIL+ E    KI DFGLA+    + D+V     
Sbjct: 150 SFQVAKGMEFL---ASRKXIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDA 206
Query: 155 K---GYMAPECYKRTPISVKADVYGYGIVLLE 183
           +    +MAPE       ++++DV+ +G++L E
Sbjct: 207 RLPLKWMAPETIFDRVYTIQSDVWSFGVLLWE 238

>pdb|3VID|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With Compound A Length = 356

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Query: 97  ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK--LPNEDFVIDKRD 154
           +  VAKG+ +L        +H D+  +NIL+ E    KI DFGLA+    + D+V     
Sbjct: 197 SFQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDA 253
Query: 155 K---GYMAPECYKRTPISVKADVYGYGIVLLE 183
           +    +MAPE       ++++DV+ +G++L E
Sbjct: 254 RLPLKWMAPETIFDRVYTIQSDVWSFGVLLWE 285

>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium Complex Lambda-Fl172 Length = 297

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 19/121 (15%)
Query: 73  NGSLTDIIF--CSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
            GSLTD++   C  E      Q   +  +  + + +LH      ++H DIK  NIL+   
Sbjct: 101 GGSLTDVVTETCMDE-----GQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMD 152
Query: 131 WTAKILDFGL-AKLPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLET 184
            + K+ DFG  A++  E     KR        +MAPE   R     K D++  GI+ +E 
Sbjct: 153 GSVKLTDFGFCAQITPEQ---SKRSXMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEM 209
Query: 185 I 185
           I
Sbjct: 210 I 210

>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded Form) Length = 325

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 50/120 (41%), Gaps = 15/120 (12%)
Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           G   D +    ER    +Q   +       + YLHD     I+H D+K  NIL       
Sbjct: 118 GGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHDN---KIIHRDLKAGNILFTLDGDI 174
Query: 134 KILDFGLAKLPNEDFVIDKRDKG-----YMAPECY-----KRTPISVKADVYGYGIVLLE 183
           K+ DFG++        I +RD       +MAPE       K  P   KADV+  GI L+E
Sbjct: 175 KLADFGVSAKNTR--XIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIE 232

>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1 Length = 297

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 19/121 (15%)
Query: 73  NGSLTDIIF--CSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
            GSLTD++   C  E      Q   +  +  + + +LH      ++H DIK  NIL+   
Sbjct: 101 GGSLTDVVTETCMDE-----GQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMD 152
Query: 131 WTAKILDFGL-AKLPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLET 184
            + K+ DFG  A++  E     KR        +MAPE   R     K D++  GI+ +E 
Sbjct: 153 GSVKLTDFGFCAQITPEQ---SKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEM 209
Query: 185 I 185
           I
Sbjct: 210 I 210

>pdb|3MDY|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Bone Morp Protein Receptor Type-1b (Bmpr1b) In Complex With Fkbp12 An 193189 Length = 337

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 57/132 (43%), Gaps = 27/132 (20%)
Query: 73  NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDEC-----EPPILHCDIKPQNILM 127
           NGSL D +  +          +++A     G+ +LH E      +P I H D+K +NIL+
Sbjct: 119 NGSLYDYLKSTTLDA---KSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILV 175
Query: 128 DEFWTAKILDFGLA----------KLPNEDFVIDKRDKGYMAPECYKRT------PISVK 171
            +  T  I D GLA           +P    V  KR   YM PE    +         + 
Sbjct: 176 KKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKR---YMPPEVLDESLNRNHFQSYIM 232
Query: 172 ADVYGYGIVLLE 183
           AD+Y +G++L E
Sbjct: 233 ADMYSFGLILWE 244

>pdb|3GCP|A Chain A, Human P38 Map Kinase In Complex With Sb203580 Length = 360

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 14/95 (14%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      I+H D+KP N+ ++E    KILDFGL +  +++       + Y A
Sbjct: 134 ILRGLKYIH---SADIIHRDLKPSNLAVNEDSELKILDFGLCRHTDDEMTGYVATRWYRA 190
Query: 160 PEC------YKRTPISVKADVYGYGIVLLETICCR 188
           PE       Y +T      D++  G ++ E +  R
Sbjct: 191 PEIMLNWMHYNQT-----VDIWSVGCIMAELLTGR 220

>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7) Length = 318

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
           Q V +   +A G+ YL D      +H D+  +NIL++     K+ DFGL+++  +D    
Sbjct: 146 QLVGMLRGIAAGMRYLADMG---YVHRDLAARNILVNSNLVCKVSDFGLSRVIEDDPEAV 202
Query: 152 KRDKG------YMAPECYKRTPISVKADVYGYGIVLLETI 185
               G      + APE  +    +  +DV+ YGIV+ E +
Sbjct: 203 YTTTGGKIPVRWTAPEAIQYRKFTSASDVWSYGIVMWEVM 242

>pdb|3VHE|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With A Novel Pyrrolopyrimidine Inhibitor Length = 359

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Query: 97  ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK--LPNEDFVIDKRD 154
           +  VAKG+ +L        +H D+  +NIL+ E    KI DFGLA+    + D+V     
Sbjct: 199 SFQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDA 255
Query: 155 K---GYMAPECYKRTPISVKADVYGYGIVLLE 183
           +    +MAPE       ++++DV+ +G++L E
Sbjct: 256 RLPLKWMAPETIFDRVYTIQSDVWSFGVLLWE 287

>pdb|4FV7|A Chain A, Crystal Structure Of The Erk2 Complexed With E94 Length = 360

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      +LH D+KP N+L++     KI DFGLA++ + D         Y+A
Sbjct: 133 ILRGLKYIHSAN---VLHRDLKPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVA 189
Query: 160 PECYKRTPISVKA-------DVYGYGIVLLETICCR 188
              Y+   I + +       D++  G +L E +  R
Sbjct: 190 TRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNR 225

>pdb|1PME|A Chain A, Structure Of Penta Mutant Human Erk2 Map Kinase Complexed With A Specific Inhibitor Of Human P38 Map Kinase Length = 380

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      +LH D+KP N+L++     KI DFGLA++ + D         Y+A
Sbjct: 153 ILRGLKYIHSAN---VLHRDLKPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVA 209
Query: 160 PECYKRTPISVKA-------DVYGYGIVLLETICCR 188
              Y+   I + +       D++  G +L E +  R
Sbjct: 210 TRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNR 245

>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 19/121 (15%)
Query: 73  NGSLTDIIF--CSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
            GSLTD++   C  E      Q   +  +  + + +LH      ++H DIK  NIL+   
Sbjct: 102 GGSLTDVVTETCMDE-----GQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMD 153
Query: 131 WTAKILDFGL-AKLPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLET 184
            + K+ DFG  A++  E     KR        +MAPE   R     K D++  GI+ +E 
Sbjct: 154 GSVKLTDFGFCAQITPEQ---SKRSXMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEM 210
Query: 185 I 185
           I
Sbjct: 211 I 211

>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The Phosphate-responsive Signal Transduction Pathway Length = 317

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK---LPNEDFVIDKRDKGYM 158
           +G+ + H   E  ILH D+KPQN+L+++    K+ DFGLA+   +P   F  +     Y 
Sbjct: 119 QGLAFCH---ENKILHRDLKPQNLLINKRGQLKLGDFGLARAFGIPVNTFSSEVVTLWYR 175
Query: 159 APECY--KRTPISVKADVYGYGIVLLETICCR 188
           AP+     RT  S   D++  G +L E I  +
Sbjct: 176 APDVLMGSRT-YSTSIDIWSCGCILAEMITGK 206

>pdb|3QYW|A Chain A, Crystal Structure Of Erk2 In Complex With An Inhibitor Length = 364

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      +LH D+KP N+L++     KI DFGLA++ + D         Y+A
Sbjct: 137 ILRGLKYIHSAN---VLHRDLKPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVA 193
Query: 160 PECYKRTPISVKA-------DVYGYGIVLLETICCR 188
              Y+   I + +       D++  G +L E +  R
Sbjct: 194 TRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNR 229

>pdb|2OH4|A Chain A, Crystal Structure Of Vegfr2 With A Benzimidazole-Urea Inhibitor Length = 316

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 12/94 (12%)
Query: 97  ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG 156
           +  VAKG+ +L        +H D+  +NIL+ E    KI DFGLA+   +D   D   KG
Sbjct: 154 SFQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLARDIXKD--PDXVRKG 208
Query: 157 -------YMAPECYKRTPISVKADVYGYGIVLLE 183
                  +MAPE       ++++DV+ +G++L E
Sbjct: 209 DARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWE 242

>pdb|1YWN|A Chain A, Vegfr2 In Complex With A Novel 4-amino-furo[2,3-d]pyrimidine Length = 316

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 12/94 (12%)
Query: 97  ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG 156
           +  VAKG+ +L        +H D+  +NIL+ E    KI DFGLA+   +D   D   KG
Sbjct: 154 SFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDIXKD--PDXVRKG 208
Query: 157 -------YMAPECYKRTPISVKADVYGYGIVLLE 183
                  +MAPE       ++++DV+ +G++L E
Sbjct: 209 DARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWE 242

>pdb|4GSB|A Chain A, Monoclinic Crystal Form Of The Apo-Erk2 Length = 364

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      +LH D+KP N+L++     KI DFGLA++ + D         Y+A
Sbjct: 137 ILRGLKYIHSAN---VLHRDLKPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVA 193
Query: 160 PECYKRTPISVKA-------DVYGYGIVLLETICCR 188
              Y+   I + +       D++  G +L E +  R
Sbjct: 194 TRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNR 229

>pdb|4FUX|A Chain A, Crystal Structure Of The Erk2 Complexed With E75 Length = 360

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      +LH D+KP N+L++     KI DFGLA++ + D         Y+A
Sbjct: 133 ILRGLKYIHSAN---VLHRDLKPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVA 189
Query: 160 PECYKRTPISVKA-------DVYGYGIVLLETICCR 188
              Y+   I + +       D++  G +L E +  R
Sbjct: 190 TRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNR 225

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 96  IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK 155
           +A  ++  + YL  +     +H D+  +N L+ E    K+ DFGL++L   D        
Sbjct: 114 MATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGA 170
Query: 156 GY----MAPECYKRTPISVKADVYGYGIVLLE 183
            +     APE       S+K+DV+ +G++L E
Sbjct: 171 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWE 202

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 96  IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK 155
           +A  ++  + YL  +     +H D+  +N L+ E    K+ DFGL++L   D        
Sbjct: 135 MATQISSAMEYLEKKN---FIHRDLAARNCLVGENHVVKVADFGLSRLMTGDTYTAHAGA 191
Query: 156 GY----MAPECYKRTPISVKADVYGYGIVLLE 183
            +     APE       S+K+DV+ +G++L E
Sbjct: 192 KFPIKWTAPESLAYNTFSIKSDVWAFGVLLWE 223

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 96  IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK 155
           +A  ++  + YL  +     +H D+  +N L+ E    K+ DFGL++L   D        
Sbjct: 116 MATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 172
Query: 156 GY----MAPECYKRTPISVKADVYGYGIVLLE 183
            +     APE       S+K+DV+ +G++L E
Sbjct: 173 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWE 204

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 96  IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK 155
           +A  ++  + YL  +     +H D+  +N L+ E    K+ DFGL++L   D        
Sbjct: 116 MATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 172
Query: 156 GY----MAPECYKRTPISVKADVYGYGIVLLE 183
            +     APE       S+K+DV+ +G++L E
Sbjct: 173 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWE 204

>pdb|4AGC|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase Domains) In Complex With Axitinib (Ag-013736) (N-Methyl-2-( 3-((E)-2-Pyridin-2-Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)- Benzamide) Length = 353

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Query: 97  ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK--LPNEDFVIDKRD 154
           +  VAKG+ +L        +H D+  +NIL+ E    KI DFGLA+    + D+V     
Sbjct: 191 SFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDA 247
Query: 155 K---GYMAPECYKRTPISVKADVYGYGIVLLE 183
           +    +MAPE       ++++DV+ +G++L E
Sbjct: 248 RLPLKWMAPETIFDRVYTIQSDVWSFGVLLWE 279

>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human Pdk1 Complex 2 Length = 311

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 14/96 (14%)
Query: 99  DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED--------FVI 150
           ++   + YLH +    I+H D+KP+NIL++E    +I DFG AK+ + +        FV 
Sbjct: 140 EIVSALEYLHGKG---IIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVG 196
Query: 151 DKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC 186
             +   Y++PE       S  +D++  G ++ + + 
Sbjct: 197 TAQ---YVSPELLTEKSASKSSDLWALGCIIYQLVA 229

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 96  IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK 155
           +A  ++  + YL  +     +H D+  +N L+ E    K+ DFGL++L   D        
Sbjct: 121 MATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 177
Query: 156 GY----MAPECYKRTPISVKADVYGYGIVLLE 183
            +     APE       S+K+DV+ +G++L E
Sbjct: 178 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWE 209

>pdb|4H3Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA 159
           + +G+ Y+H      +LH D+KP N+L++     KI DFGLA++ + D         Y+A
Sbjct: 135 ILRGLKYIHSAN---VLHRDLKPSNLLLNTTSDLKICDFGLARVADPDHDHTGFLTEYVA 191
Query: 160 PECYKRTPISVKA-------DVYGYGIVLLETICCR 188
              Y+   I + +       D++  G +L E +  R
Sbjct: 192 TRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNR 227

>pdb|2X0G|A Chain A, X-ray Structure Of A Dap-kinase Calmodulin Complex Length = 334

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 15/118 (12%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           V  G L D  F + + +    +       +  G+ YLH      I H D+KP+NI++ + 
Sbjct: 96  VAGGELFD--FLAEKESLTEEEATEFLKQILNGVYYLHS---LQIAHFDLKPENIMLLDR 150
Query: 131 WTAK----ILDFGLAKLPNEDFVIDKRD----KGYMAPECYKRTPISVKADVYGYGIV 180
              K    I+DFGLA     DF  + ++      ++APE     P+ ++AD++  G++
Sbjct: 151 NVPKPRIKIIDFGLAH--KIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVI 206

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 96  IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK 155
           +A  ++  + YL  +     +H D+  +N L+ E    K+ DFGL++L   D        
Sbjct: 116 MATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 172
Query: 156 GY----MAPECYKRTPISVKADVYGYGIVLLE 183
            +     APE       S+K+DV+ +G++L E
Sbjct: 173 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWE 204

>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase ( Diphosphorylated Form) Bound To 5- Amino-3-((4-( Aminosulfonyl)phenyl)amino)-N-(2,6- Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide Length = 325

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 50/120 (41%), Gaps = 15/120 (12%)
Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           G   D +    ER    +Q   +       + YLHD     I+H D+K  NIL       
Sbjct: 118 GGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHDN---KIIHRDLKAGNILFTLDGDI 174
Query: 134 KILDFGLAKLPNEDFVIDKRDKG-----YMAPECY-----KRTPISVKADVYGYGIVLLE 183
           K+ DFG++        I +RD       +MAPE       K  P   KADV+  GI L+E
Sbjct: 175 KLADFGVSAKNTR--XIQRRDXFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIE 232

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 96  IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK 155
           +A  ++  + YL  +     +H D+  +N L+ E    K+ DFGL++L   D        
Sbjct: 121 MATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGA 177
Query: 156 GY----MAPECYKRTPISVKADVYGYGIVLLE 183
            +     APE       S+K+DV+ +G++L E
Sbjct: 178 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWE 209

>pdb|2XIR|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With Pf-00337210 (N,2-Dimethyl-6-(7-(2-Morpholinoethoxy) Quinolin-4-Yloxy)benzofuran-3-Carboxamide) Length = 316

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Query: 97  ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK--LPNEDFVIDKRD 154
           +  VAKG+ +L        +H D+  +NIL+ E    KI DFGLA+    + D+V     
Sbjct: 154 SFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDA 210
Query: 155 K---GYMAPECYKRTPISVKADVYGYGIVLLE 183
           +    +MAPE       ++++DV+ +G++L E
Sbjct: 211 RLPLKWMAPETIFDRVYTIQSDVWSFGVLLWE 242

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 96  IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK 155
           +A  ++  + YL  +     +H D+  +N L+ E    K+ DFGL++L   D        
Sbjct: 121 MATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 177
Query: 156 GY----MAPECYKRTPISVKADVYGYGIVLLE 183
            +     APE       S+K+DV+ +G++L E
Sbjct: 178 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWE 209

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 96  IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK 155
           +A  ++  + YL  +     +H D+  +N L+ E    K+ DFGL++L   D        
Sbjct: 118 MATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 174
Query: 156 GY----MAPECYKRTPISVKADVYGYGIVLLE 183
            +     APE       S+K+DV+ +G++L E
Sbjct: 175 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWE 206

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 96  IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK 155
           +A  ++  + YL  +     +H D+  +N L+ E    K+ DFGL++L   D        
Sbjct: 116 MATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 172
Query: 156 GY----MAPECYKRTPISVKADVYGYGIVLLE 183
            +     APE       S+K+DV+ +G++L E
Sbjct: 173 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWE 204

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 96  IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK 155
           +A  ++  + YL  +     +H D+  +N L+ E    K+ DFGL++L   D        
Sbjct: 121 MATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 177
Query: 156 GY----MAPECYKRTPISVKADVYGYGIVLLE 183
            +     APE       S+K+DV+ +G++L E
Sbjct: 178 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWE 209

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 96  IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK 155
           +A  ++  + YL  +     +H D+  +N L+ E    K+ DFGL++L   D        
Sbjct: 116 MATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 172
Query: 156 GY----MAPECYKRTPISVKADVYGYGIVLLE 183
            +     APE       S+K+DV+ +G++L E
Sbjct: 173 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWE 204

>pdb|1Y6A|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 2-Anilino-5-Aryl-Oxazole Inhibitor Length = 366

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Query: 97  ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK--LPNEDFVIDKRD 154
           +  VAKG+ +L        +H D+  +NIL+ E    KI DFGLA+    + D+V     
Sbjct: 204 SFQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDA 260
Query: 155 K---GYMAPECYKRTPISVKADVYGYGIVLLE 183
           +    +MAPE       ++++DV+ +G++L E
Sbjct: 261 RLPLKWMAPETIFDRVYTIQSDVWSFGVLLWE 292

>pdb|3VNT|A Chain A, Crystal Structure Of The Kinase Domain Of Human Vegfr2 With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 318

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Query: 97  ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK--LPNEDFVIDKRD 154
           +  VAKG+ +L        +H D+  +NIL+ E    KI DFGLA+    + D+V     
Sbjct: 156 SFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDA 212
Query: 155 K---GYMAPECYKRTPISVKADVYGYGIVLLE 183
           +    +MAPE       ++++DV+ +G++L E
Sbjct: 213 RLPLKWMAPETIFDRVYTIQSDVWSFGVLLWE 244

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 96  IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK 155
           +A  ++  + YL  +     +H D+  +N L+ E    K+ DFGL++L   D        
Sbjct: 129 MATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 185
Query: 156 GY----MAPECYKRTPISVKADVYGYGIVLLE 183
            +     APE       S+K+DV+ +G++L E
Sbjct: 186 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWE 217

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 96  IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK 155
           +A  ++  + YL  +     +H D+  +N L+ E    K+ DFGL++L   D        
Sbjct: 121 MATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 177
Query: 156 GY----MAPECYKRTPISVKADVYGYGIVLLE 183
            +     APE       S+K+DV+ +G++L E
Sbjct: 178 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWE 209

>pdb|3VHK|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Back Pocket Binder Length = 368

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Query: 97  ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK--LPNEDFVIDKRD 154
           +  VAKG+ +L        +H D+  +NIL+ E    KI DFGLA+    + D+V     
Sbjct: 206 SFQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDA 262
Query: 155 K---GYMAPECYKRTPISVKADVYGYGIVLLE 183
           +    +MAPE       ++++DV+ +G++L E
Sbjct: 263 RLPLKWMAPETIFDRVYTIQSDVWSFGVLLWE 294

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 96  IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK 155
           +A  ++  + YL  +     +H D+  +N L+ E    K+ DFGL++L   D        
Sbjct: 114 MATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGA 170
Query: 156 GY----MAPECYKRTPISVKADVYGYGIVLLE 183
            +     APE       S+K+DV+ +G++L E
Sbjct: 171 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWE 202

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 96  IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK 155
           +A  ++  + YL  +     +H D+  +N L+ E    K+ DFGL++L   D        
Sbjct: 120 MATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 176
Query: 156 GY----MAPECYKRTPISVKADVYGYGIVLLE 183
            +     APE       S+K+DV+ +G++L E
Sbjct: 177 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWE 208

>pdb|4AZE|A Chain A, Human Dyrk1a In Complex With Leucettine L41 Length = 382

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
Query: 75  SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM--DEFWT 132
           +L D++  +  R    N   + A  +   +L+L    E  I+HCD+KP+NIL+   +   
Sbjct: 141 NLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRXA 199
Query: 133 AKILDFGLAKLPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLE 183
            KI+DFG +    +      + + Y +PE     P  +  D++  G +L+E
Sbjct: 200 IKIVDFGSSCQLGQRIYQXIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVE 250

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 96  IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK 155
           +A  ++  + YL  +     +H D+  +N L+ E    K+ DFGL++L   D        
Sbjct: 118 MATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 174
Query: 156 GY----MAPECYKRTPISVKADVYGYGIVLLE 183
            +     APE       S+K+DV+ +G++L E
Sbjct: 175 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWE 206

>pdb|1VR2|A Chain A, Human Vascular Endothelial Growth Factor Receptor 2 (Kdr) Kinase Domain Length = 316

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 12/94 (12%)
Query: 97  ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG 156
           +  VAKG+ +L        +H D+  +NIL+ E    KI DFGLA+   +D   D   KG
Sbjct: 154 SFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDIYKD--PDXVRKG 208
Query: 157 -------YMAPECYKRTPISVKADVYGYGIVLLE 183
                  +MAPE       ++++DV+ +G++L E
Sbjct: 209 DARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWE 242

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 96  IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK 155
           +A  ++  + YL  +     +H D+  +N L+ E    K+ DFGL++L   D        
Sbjct: 116 MATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGA 172
Query: 156 GY----MAPECYKRTPISVKADVYGYGIVLLE 183
            +     APE       S+K+DV+ +G++L E
Sbjct: 173 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWE 204

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 96  IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK 155
           +A  ++  + YL  +     +H D+  +N L+ E    K+ DFGL++L   D        
Sbjct: 117 MATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGA 173
Query: 156 GY----MAPECYKRTPISVKADVYGYGIVLLE 183
            +     APE       S+K+DV+ +G++L E
Sbjct: 174 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWE 205

>pdb|2XZS|A Chain A, Death Associated Protein Kinase 1 Residues 1-312 Length = 312

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 15/118 (12%)
Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           V  G L D  F + + +    +       +  G+ YLH      I H D+KP+NI++ + 
Sbjct: 96  VAGGELFD--FLAEKESLTEEEATEFLKQILNGVYYLHS---LQIAHFDLKPENIMLLDR 150
Query: 131 WTAK----ILDFGLAKLPNEDFVIDKRD----KGYMAPECYKRTPISVKADVYGYGIV 180
              K    I+DFGLA     DF  + ++      ++APE     P+ ++AD++  G++
Sbjct: 151 NVPKPRIKIIDFGLAH--KIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVI 206

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	257
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	3e-60
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	5e-52
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	1e-49
3soc_A	322	Activin receptor type-2A; structural genomics cons	2e-39
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	5e-37
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	2e-34
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	5e-33
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	2e-31
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	2e-31
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	1e-29
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	2e-29
3q4u_A	301	Activin receptor type-1; structural genomics conso	3e-29
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	4e-29
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	6e-29
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	1e-28
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	8e-28
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	2e-27
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	3e-27
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	2e-17
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	3e-17
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	4e-17
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	2e-16
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	3e-16
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	4e-16
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	4e-16
2a19_B	284	Interferon-induced, double-stranded RNA-activated	1e-15
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	3e-15
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	3e-15
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	7e-15
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	7e-15
3ork_A	311	Serine/threonine protein kinase; structural genomi	7e-15
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	7e-15
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	8e-15
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	9e-15
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	1e-14
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	1e-14
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	2e-14
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	2e-14
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	2e-14
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	3e-14
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	3e-14
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	6e-14
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	6e-14
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	8e-14
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	8e-14
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	2e-13
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	3e-13
3an0_A	340	Dual specificity mitogen-activated protein kinase;	3e-13
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	7e-13
3fme_A	290	Dual specificity mitogen-activated protein kinase;	7e-13
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	1e-12
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	1e-12
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	2e-12
3aln_A	327	Dual specificity mitogen-activated protein kinase;	2e-12
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	4e-12
2dyl_A	318	Dual specificity mitogen-activated protein kinase	4e-12
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	5e-12
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	1e-11
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	2e-11
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	5e-11
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	5e-11
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	5e-11
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	6e-11
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	7e-11
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	8e-11
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	1e-10
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	1e-10
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	1e-10
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	1e-10
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	1e-10
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	2e-10
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	2e-10
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	2e-10
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	2e-10
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	2e-10
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	2e-10
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	2e-10
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	3e-10
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	3e-10
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	3e-10
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	3e-10
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	3e-10
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	3e-10
3pls_A	298	Macrophage-stimulating protein receptor; protein k	3e-10
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	4e-10
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	4e-10
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	5e-10
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	6e-10
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	6e-10
3bhy_A	283	Death-associated protein kinase 3; death associate	8e-10
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	8e-10
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	9e-10
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	1e-09
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	1e-09
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	1e-09
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	1e-09
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	1e-09
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	1e-09
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	1e-09
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	1e-09
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	1e-09
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	1e-09
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	2e-09
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	2e-09
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	2e-09
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	2e-09
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	2e-09
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	2e-09
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	2e-09
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	2e-09
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	2e-09
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	3e-09
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	3e-09
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	3e-09
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	3e-09
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	3e-09
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	4e-09
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	4e-09
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	4e-09
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	4e-09
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	4e-09
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	4e-09
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	4e-09
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	5e-09
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	5e-09
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	6e-09
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	7e-09
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	7e-09
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	7e-09
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	7e-09
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	7e-09
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	7e-09
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	8e-09
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	9e-09
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	1e-08
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	1e-08
3uqc_A	286	Probable conserved transmembrane protein; structur	1e-08
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	1e-08
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	1e-08
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	1e-08
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	1e-08
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	2e-08
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	2e-08
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	2e-08
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	2e-08
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	2e-08
3o0g_A	292	Cell division protein kinase 5; kinase activator c	2e-08
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	2e-08
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	3e-08
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	3e-08
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	3e-08
3niz_A	311	Rhodanese family protein; structural genomics, str	3e-08
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	3e-08
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	4e-08
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	4e-08
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	5e-08
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	5e-08
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	6e-08
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	6e-08
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	6e-08
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	7e-08
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	7e-08
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	7e-08
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	7e-08
4aoj_A	329	High affinity nerve growth factor receptor; transf	7e-08
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	8e-08
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	8e-08
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	1e-07
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	1e-07
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	1e-07
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	1e-07
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	1e-07
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	1e-07
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	1e-07
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	2e-07
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	2e-07
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	2e-07
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	2e-07
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	2e-07
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	2e-07
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	2e-07
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	3e-07
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	3e-07
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	3e-07
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	3e-07
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	4e-07
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	5e-07
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	5e-07
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	6e-07
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	7e-07
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	7e-07
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	7e-07
3rp9_A	458	Mitogen-activated protein kinase; structural genom	8e-07
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	9e-07
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	1e-06
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	1e-06
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	1e-06
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	1e-06
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	1e-06
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	1e-06
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	1e-06
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	2e-06
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	2e-06
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	2e-06
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	2e-06
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	2e-06
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	2e-06
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	2e-06
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	3e-06
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	3e-06
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	4e-06
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	4e-06
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	4e-06
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	4e-06
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	4e-06
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	6e-06
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	6e-06
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	1e-05
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	2e-05
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	2e-05
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	3e-05
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	3e-05
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	4e-05
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	4e-05
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	4e-05
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	4e-05
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	6e-05
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	2e-04
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	2e-04
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	3e-04
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	4e-04
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	5e-04

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  192 bits (489), Expect = 3e-60
 Identities = 72/200 (36%), Positives = 107/200 (53%), Gaps = 15/200 (7%)

Query: 71  VRNGSLTDIIFCSAERNPY--WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD 128
           + NGS+   +    E  P   W +R RIAL  A+G+ YLHD C+P I+H D+K  NIL+D
Sbjct: 109 MANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLD 168

Query: 129 EFWTAKILDFGLAKL-PNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLET 184
           E + A + DFGLAKL   +D  +    +G   ++APE       S K DV+GYG++LLE 
Sbjct: 169 EEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLEL 228

Query: 185 ICCRKNMEIDASKP---EEIILTNWVYKCFINRELNKLV---RGTKVDKKNLENLVKVGL 238
           I  ++    D ++    ++++L +WV      ++L  LV          + +E L++V L
Sbjct: 229 ITGQRA--FDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVAL 286

Query: 239 WCVQDEPALRP-MKCAVMML 257
            C Q  P  RP M   V ML
Sbjct: 287 LCTQSSPMERPKMSEVVRML 306

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  170 bits (433), Expect = 5e-52
 Identities = 61/201 (30%), Positives = 95/201 (47%), Gaps = 29/201 (14%)

Query: 73  NGSLTDIIFCSAERNP-YWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 131
           NGSL D + C     P  W+ R +IA   A GI +LH+      +H DIK  NIL+DE +
Sbjct: 114 NGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENH---HIHRDIKSANILLDEAF 170

Query: 132 TAKILDFGLAKLPNEDFVIDKRDK-----------GYMAPECYKRTPISVKADVYGYGIV 180
           TAKI DFGLA+        +K  +            YMAPE   R  I+ K+D+Y +G+V
Sbjct: 171 TAKISDFGLARA------SEKFAQTVMTSRIVGTTAYMAPE-ALRGEITPKSDIYSFGVV 223

Query: 181 LLETICCRKNMEIDASKPEEIILTNWVYKCFIN-RELNKLV--RGTKVDKKNLENLVKVG 237
           LLE I       +D  +  +++L     +     + +   +  +    D  ++E +  V 
Sbjct: 224 LLEIITGLPA--VDEHREPQLLLD-IKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVA 280

Query: 238 LWCVQDEPALRP-MKCAVMML 257
             C+ ++   RP +K    +L
Sbjct: 281 SQCLHEKKNKRPDIKKVQQLL 301

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  164 bits (418), Expect = 1e-49
 Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 31/206 (15%)

Query: 71  VRNGSLTDIIFCSAERNPY--WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD 128
           + NG+L   ++ S        W QR+ I +  A+G+ YLH      I+H D+K  NIL+D
Sbjct: 117 MENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLH---TRAIIHRDVKSINILLD 173

Query: 129 EFWTAKILDFGLAKLPNEDFVIDKRDK-----------GYMAPECYKRTPISVKADVYGY 177
           E +  KI DFG++K   E       D+           GY+ PE + +  ++ K+DVY +
Sbjct: 174 ENFVPKITDFGISKKGTEL------DQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSF 227

Query: 178 GIVLLETICCRKNMEIDASKP-EEIILTNWVYKCFINRELNKLV----RGTKVDKKNLEN 232
           G+VL E +C R    I  S P E + L  W  +   N +L ++V       K+  ++L  
Sbjct: 228 GVVLFEVLCARSA--IVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLAD-KIRPESLRK 284

Query: 233 LVKVGLWCVQDEPALRP-MKCAVMML 257
                + C+      RP M   +  L
Sbjct: 285 FGDTAVKCLALSSEDRPSMGDVLWKL 310

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score =  138 bits (349), Expect = 2e-39
 Identities = 49/213 (23%), Positives = 79/213 (37%), Gaps = 33/213 (15%)

Query: 73  NGSLTDIIFCSAERNPY-WNQRVRIALDVAKGILYLHDE-------CEPPILHCDIKPQN 124
            GSL+D +      N   WN+   IA  +A+G+ YLH++        +P I H DIK +N
Sbjct: 106 KGSLSDFLK----ANVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKN 161

Query: 125 ILMDEFWTAKILDFGLAKL--PNEDFVIDKRDKG---YMAPE-----CYKRTPISVKADV 174
           +L+    TA I DFGLA      +         G   YMAPE        +    ++ D+
Sbjct: 162 VLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDM 221

Query: 175 YGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVD-------- 226
           Y  G+VL E +  R            +     + +     ++ ++V   K          
Sbjct: 222 YAMGLVLWE-LASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQ 280

Query: 227 -KKNLENLVKVGLWCVQDEPALRP-MKCAVMML 257
               +  L +    C   +   R    C    +
Sbjct: 281 KHAGMAMLCETIEECWDHDAEARLSAGCVGERI 313

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score =  131 bits (332), Expect = 5e-37
 Identities = 45/121 (37%), Positives = 70/121 (57%), Gaps = 5/121 (4%)

Query: 72  RNGSLTDIIFCSAERNPY-WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
             GSL  ++  S  R      +R+ +A DVAKG+ YLH    PPI+H ++K  N+L+D+ 
Sbjct: 117 SRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLH-NRNPPIVHRNLKSPNLLVDKK 175

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETICC 187
           +T K+ DFGL++L    F+  K   G   +MAPE  +  P + K+DVY +G++L E    
Sbjct: 176 YTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATL 235

Query: 188 R 188
           +
Sbjct: 236 Q 236

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score =  124 bits (314), Expect = 2e-34
 Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 8/124 (6%)

Query: 71  VRNGSLTDIIFCSAERNPY-WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE 129
              GSL +++  +     Y     +   L  ++G+ YLH      ++H D+KP N+L+  
Sbjct: 81  AEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVA 140

Query: 130 FWT-AKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETI 185
             T  KI DFG A            +KG   +MAPE ++ +  S K DV+ +GI+L E I
Sbjct: 141 GGTVLKICDFGTACDIQTHMT---NNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVI 197

Query: 186 CCRK 189
             RK
Sbjct: 198 TRRK 201

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score =  121 bits (306), Expect = 5e-33
 Identities = 43/221 (19%), Positives = 74/221 (33%), Gaps = 39/221 (17%)

Query: 73  NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDE------CEPPILHCDIKPQNIL 126
           NGSL   +         W    R+A  V +G+ YLH E       +P I H D+  +N+L
Sbjct: 96  NGSLXKYLS---LHTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVL 152

Query: 127 MDEFWTAKILDFGLAKLPNEDFVIDKRD-----------KGYMAPE-------CYKRTPI 168
           +    T  I DFGL+     + ++   +             YMAPE              
Sbjct: 153 VKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESA 212

Query: 169 SVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLV------- 220
             + D+Y  G++  E    C      ++    ++     V       ++  LV       
Sbjct: 213 LKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRP 272

Query: 221 ---RGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML 257
                 K +   + +L +    C   +   R   + A   +
Sbjct: 273 KFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERM 313

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score =  115 bits (291), Expect = 2e-31
 Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 12/123 (9%)

Query: 72  RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 131
             GSL +++          +Q V+ ALD+A+G+ +LH   EP I    +  +++++DE  
Sbjct: 92  PYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHT-LEPLIPRHALNSRSVMIDEDM 150

Query: 132 TAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISV---KADVYGYGIVLLETI 185
           TA+I    +                   ++APE  ++ P       AD++ + ++L E +
Sbjct: 151 TARISMADVKF-----SFQSPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELV 205

Query: 186 CCR 188
              
Sbjct: 206 TRE 208

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score =  115 bits (291), Expect = 2e-31
 Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 16/128 (12%)

Query: 72  RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF- 130
           R G L  ++   + +    +  V  A+ +A+G+ YLHDE   PI+H D+K  NIL+ +  
Sbjct: 89  RGGPLNRVL---SGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKV 145

Query: 131 -------WTAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIV 180
                     KI DFGLA+  +          G   +MAPE  + +  S  +DV+ YG++
Sbjct: 146 ENGDLSNKILKITDFGLAREWHRTTK--MSAAGAYAWMAPEVIRASMFSKGSDVWSYGVL 203

Query: 181 LLETICCR 188
           L E +   
Sbjct: 204 LWELLTGE 211

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score =  111 bits (280), Expect = 1e-29
 Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 15/129 (11%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           V  G L   +         W+ ++R+ LD+A GI Y+ +   PPI+H D++  NI +   
Sbjct: 103 VPCGDLYHRLL-DKAHPIKWSVKLRLMLDIALGIEYMQN-QNPPIVHRDLRSPNIFLQSL 160

Query: 131 W-----TAKILDFGLAKLPNEDFVIDKRDKG---YMAPE--CYKRTPISVKADVYGYGIV 180
                  AK+ DFGL++             G   +MAPE    +    + KAD Y + ++
Sbjct: 161 DENAPVCAKVADFGLSQQSVHSV---SGLLGNFQWMAPETIGAEEESYTEKADTYSFAMI 217

Query: 181 LLETICCRK 189
           L   +    
Sbjct: 218 LYTILTGEG 226

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score =  110 bits (278), Expect = 3e-29
 Identities = 38/135 (28%), Positives = 58/135 (42%), Gaps = 24/135 (17%)

Query: 73  NGSLTDIIFCSAERNPY-WNQRVRIALDVAKGILYLHDE-----CEPPILHCDIKPQNIL 126
            GSL D +    +         +RI L +A G+ +LH E      +P I H D+K +NIL
Sbjct: 90  MGSLYDYL----QLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNIL 145

Query: 127 MDEFWTAKILDFGLAKL-PNEDFVIDKRDKG------YMAPECYKRTPISV------KAD 173
           + +     I D GLA +       +D  +        YMAPE    T          + D
Sbjct: 146 VKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVD 205

Query: 174 VYGYGIVLLETICCR 188
           ++ +G+VL E +  R
Sbjct: 206 IWAFGLVLWE-VARR 219

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score =  111 bits (279), Expect = 4e-29
 Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 24/135 (17%)

Query: 73  NGSLTDIIFCSAERNPY-WNQRVRIALDVAKGILYLHDE-----CEPPILHCDIKPQNIL 126
           NGSL D +    +         +++A     G+ +LH E      +P I H D+K +NIL
Sbjct: 119 NGSLYDYL----KSTTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNIL 174

Query: 127 MDEFWTAKILDFGLAKL----PNEDFVIDKRDKG---YMAPE------CYKRTPISVKAD 173
           + +  T  I D GLA       NE  +      G   YM PE              + AD
Sbjct: 175 VKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMAD 234

Query: 174 VYGYGIVLLETICCR 188
           +Y +G++L E +  R
Sbjct: 235 MYSFGLILWE-VARR 248

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score =  111 bits (278), Expect = 6e-29
 Identities = 39/134 (29%), Positives = 56/134 (41%), Gaps = 23/134 (17%)

Query: 73  NGSLTDIIFCSAERNPY-WNQRVRIALDVAKGILYLHDE-----CEPPILHCDIKPQNIL 126
           +GSL D +     R        +++AL  A G+ +LH E      +P I H D+K +NIL
Sbjct: 124 HGSLFDYL----NRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNIL 179

Query: 127 MDEFWTAKILDFGLAKL----PNEDFVIDKRDKG---YMAPE------CYKRTPISVKAD 173
           + +  T  I D GLA       +   +      G   YMAPE        K      +AD
Sbjct: 180 VKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRAD 239

Query: 174 VYGYGIVLLETICC 187
           +Y  G+V  E    
Sbjct: 240 IYAMGLVFWEIARR 253

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score =  109 bits (275), Expect = 1e-28
 Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 25/144 (17%)

Query: 72  RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 131
           +  +L  ++   A+     N+  +IA ++ KG+ YLH      ILH D+K +N+  D   
Sbjct: 112 KGRTLYSVVR-DAKIVLDVNKTRQIAQEIVKGMGYLH---AKGILHKDLKSKNVFYDN-G 166

Query: 132 TAKILDFGLAKLPNEDFVIDKRDK--------GYMAPECYKRT---------PISVKADV 174
              I DFGL  +        + DK         ++APE  ++          P S  +DV
Sbjct: 167 KVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDV 226

Query: 175 YGYGIVLLETICCR---KNMEIDA 195
           +  G +  E        K    +A
Sbjct: 227 FALGTIWYELHAREWPFKTQPAEA 250

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score =  106 bits (268), Expect = 8e-28
 Identities = 39/125 (31%), Positives = 60/125 (48%), Gaps = 12/125 (9%)

Query: 72  RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 131
              SL   +  ++E      + + IA   A+G+ YLH      I+H D+K  NI + E  
Sbjct: 102 EGSSLYHHLH-ASETKFEMKKLIDIARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDN 157

Query: 132 TAKILDFGLAKLPNEDFVIDKRDKG-----YMAPECYK---RTPISVKADVYGYGIVLLE 183
           T KI DFGLA   +      + ++      +MAPE  +     P S ++DVY +GIVL E
Sbjct: 158 TVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYE 217

Query: 184 TICCR 188
            +  +
Sbjct: 218 LMTGQ 222

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score =  105 bits (264), Expect = 3e-27
 Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 21/136 (15%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           ++ G+L  II     + P W+QRV  A D+A G+ YLH      I+H D+   N L+ E 
Sbjct: 89  IKGGTLRGIIKSMDSQYP-WSQRVSFAKDIASGMAYLHSM---NIIHRDLNSHNCLVREN 144

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKG-----------------YMAPECYKRTPISVKAD 173
               + DFGLA+L  ++    +  +                  +MAPE         K D
Sbjct: 145 KNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVD 204

Query: 174 VYGYGIVLLETICCRK 189
           V+ +GIVL E I    
Sbjct: 205 VFSFGIVLCEIIGRVN 220

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 79.8 bits (197), Expect = 2e-17
 Identities = 33/136 (24%), Positives = 54/136 (39%), Gaps = 21/136 (15%)

Query: 73  NGSLTDIIFCSAERNPYWNQRV-RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 131
            G L + +     R P     V +I     + + ++H   +PPI+H D+K +N+L+    
Sbjct: 117 KGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHR-QKPPIIHRDLKVENLLLSNQG 175

Query: 132 TAKILDFGLAKLPNEDFVIDKRDKG---------------YMAPE---CYKRTPISVKAD 173
           T K+ DFG A   +         +                Y  PE    Y   PI  K D
Sbjct: 176 TIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQD 235

Query: 174 VYGYGIVLLETICCRK 189
           ++  G +L   +C R+
Sbjct: 236 IWALGCILYL-LCFRQ 250

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 78.8 bits (194), Expect = 3e-17
 Identities = 37/204 (18%), Positives = 65/204 (31%), Gaps = 55/204 (26%)

Query: 72  RNGSLTDIIFCSAERNPYWNQRVRIALD----VAKGILYLHDECEPPILHCDIKPQNILM 127
           R  +L D +     R    ++   + L     +A+ + +LH +    ++H D+KP NI  
Sbjct: 144 RKENLKDWM---NRRCSLEDREHGVCLHIFIQIAEAVEFLHSKG---LMHRDLKPSNIFF 197

Query: 128 DEFWTAKILDFGLAKLPNEDFVIDKRDKG---------------YMAPECYKRTPISVKA 172
                 K+ DFGL    ++D                        YM+PE       S K 
Sbjct: 198 TMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKV 257

Query: 173 DVYGYGIVLLETICCRKN--MEIDASKPEEIILTNWVYKCFINRELNKLVRGT-----KV 225
           D++  G++L E +    +  ME                     R +  +           
Sbjct: 258 DIFSLGLILFE-LLYSFSTQME-------------------RVRIITDVRNLKFPLLFTQ 297

Query: 226 DKKNLENLVKVGLWCVQDEPALRP 249
                  +V+     +   P  RP
Sbjct: 298 KYPQEHMMVQ---DMLSPSPTERP 318

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 77.8 bits (192), Expect = 4e-17
 Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 14/119 (11%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRV--RIALDVAKGILYLHDECEPPILHCDIKPQNILMD 128
           + +G+L   +    +R      +V       + KG+ +LH    PPI+H D+K  NI + 
Sbjct: 111 MTSGTLKTYL----KRFKVMKIKVLRSWCRQILKGLQFLH-TRTPPIIHRDLKCDNIFIT 165

Query: 129 -EFWTAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLE 183
               + KI D GLA L    F   K   G   +MAPE Y+        DVY +G+ +LE
Sbjct: 166 GPTGSVKIGDLGLATLKRASFA--KAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLE 221

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 76.2 bits (188), Expect = 2e-16
 Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 8/124 (6%)

Query: 73  NGSLTDIIFCSAERNPYWNQRV--RIALDVAKGILYLHDECEPP--ILHCDIKPQNILMD 128
            G L  +I    +   Y ++    R+   +   +   H   +    +LH D+KP N+ +D
Sbjct: 91  GGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLD 150

Query: 129 EFWTAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETI 185
                K+ DFGLA++ N D    K   G   YM+PE   R   + K+D++  G +L E +
Sbjct: 151 GKQNVKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYE-L 209

Query: 186 CCRK 189
           C   
Sbjct: 210 CALM 213

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 75.9 bits (187), Expect = 3e-16
 Identities = 25/134 (18%), Positives = 48/134 (35%), Gaps = 21/134 (15%)

Query: 73  NGSLTDIIFCSAERNPYWNQR--VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
            G+L + I    ++  +  +   + + L + +G+  +H        H D+KP NIL+ + 
Sbjct: 114 RGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHA---KGYAHRDLKPTNILLGDE 170

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKG------------YMAPE---CYKRTPISVKADVY 175
               ++D G            ++               Y APE         I  + DV+
Sbjct: 171 GQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVW 230

Query: 176 GYGIVLLETICCRK 189
             G VL   +   +
Sbjct: 231 SLGCVLYA-MMFGE 243

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 75.4 bits (186), Expect = 4e-16
 Identities = 34/188 (18%), Positives = 66/188 (35%), Gaps = 31/188 (16%)

Query: 73  NGSLTDIIFCSAERNPYWNQRV--RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
            G L+ +I    ++     +R   +  + +   + ++H      ++H DIKP N+ +   
Sbjct: 116 AGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRR---VMHRDIKPANVFITAT 172

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETICC 187
              K+ D GL +  +          G   YM+PE       + K+D++  G +L E    
Sbjct: 173 GVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAAL 232

Query: 188 RKNMEIDASKPEEIILTNWVYKCFINRELNKLVRG------TKVDKKNLENLVKVGLWCV 241
           +     D      +                K+ +       +    + L  LV     C+
Sbjct: 233 QSPFYGDKMNLYSLC--------------KKIEQCDYPPLPSDHYSEELRQLVN---MCI 275

Query: 242 QDEPALRP 249
             +P  RP
Sbjct: 276 NPDPEKRP 283

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 75.0 bits (185), Expect = 4e-16
 Identities = 40/123 (32%), Positives = 56/123 (45%), Gaps = 21/123 (17%)

Query: 71  VRNGSLTDIIFCSAERNPY-WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE 129
           +   +L++ I       P   +  +     +  GI + HD     I+H DIKPQNIL+D 
Sbjct: 93  IEGPTLSEYI---ESHGPLSVDTAINFTNQILDGIKHAHDM---RIVHRDIKPQNILIDS 146

Query: 130 FWTAKILDFGLAKLPNE------DFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIV 180
             T KI DFG+AK  +E      + V+     G   Y +PE  K        D+Y  GIV
Sbjct: 147 NKTLKIFDFGIAKALSETSLTQTNHVL-----GTVQYFSPEQAKGEATDECTDIYSIGIV 201

Query: 181 LLE 183
           L E
Sbjct: 202 LYE 204

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 73.5 bits (181), Expect = 1e-15
 Identities = 41/184 (22%), Positives = 69/184 (37%), Gaps = 34/184 (18%)

Query: 73  NGSLTDIIFCSAERNPYWNQRV--RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
            G+L   I     R    ++ +   +   + KG+ Y+H +    +++ D+KP NI + + 
Sbjct: 104 KGTLEQWI--EKRRGEKLDKVLALELFEQITKGVDYIHSKK---LINRDLKPSNIFLVDT 158

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETICC 187
              KI DFGL      D     R KG   YM+PE         + D+Y  G++L E +  
Sbjct: 159 KQVKIGDFGLVTSLKNDGKR-TRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHV 217

Query: 188 RKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDK--KNLENLVKVGLWCVQDEP 245
                       E            ++    L  G   D   K  + L++     +  +P
Sbjct: 218 CD-------TAFE-----------TSKFFTDLRDGIISDIFDKKEKTLLQ---KLLSKKP 256

Query: 246 ALRP 249
             RP
Sbjct: 257 EDRP 260

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 73.1 bits (180), Expect = 3e-15
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 17/99 (17%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE------D 147
           V I   +   +   H        H D+KP+NIL+     A ++DFG+A    +       
Sbjct: 137 VAIVRQIGSALDAAHAA---GATHRDVKPENILVSADDFAYLVDFGIASATTDEKLTQLG 193

Query: 148 FVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLE 183
             +     G   YMAPE +  +  + +AD+Y    VL E
Sbjct: 194 NTV-----GTLYYMAPERFSESHATYRADIYALTCVLYE 227

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 74.1 bits (182), Expect = 3e-15
 Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 20/118 (16%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           V   SL        ++ P   + +   L++   + YLH      +++ D+KP+NI++ E 
Sbjct: 166 VGGQSLKRSK---GQKLP-VAEAIAYLLEILPALSYLHSI---GLVYNDLKPENIMLTEE 218

Query: 131 WTAKILDFGLAKLPNEDFVIDKRD-----KGYMAPECYKRTPISVKADVYGYGIVLLE 183
              K++D G          I+         G+ APE  +  P +V  D+Y  G  L  
Sbjct: 219 -QLKLIDLGAVSR------INSFGYLYGTPGFQAPEIVRTGP-TVATDIYTVGRTLAA 268

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 71.6 bits (176), Expect = 7e-15
 Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 25/131 (19%)

Query: 72  RNGSLTDIIFCSAERNPYWNQRVRIALD----VAKGILYLHDECEPPILHCDIKPQNILM 127
           R  +L D +     R     +   + L     +A+ + +LH +    ++H D+KP NI  
Sbjct: 98  RKENLKDWM---NGRCTIEERERSVCLHIFLQIAEAVEFLHSKG---LMHRDLKPSNIFF 151

Query: 128 DEFWTAKILDFGLAKLPNEDFVIDKRDKG---------------YMAPECYKRTPISVKA 172
                 K+ DFGL    ++D                        YM+PE       S K 
Sbjct: 152 TMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKV 211

Query: 173 DVYGYGIVLLE 183
           D++  G++L E
Sbjct: 212 DIFSLGLILFE 222

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 72.5 bits (178), Expect = 7e-15
 Identities = 34/137 (24%), Positives = 51/137 (37%), Gaps = 32/137 (23%)

Query: 73  NGSLTDII-----FCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM 127
           N  L   +         ER  YW         + + +  +H      I+H D+KP N L+
Sbjct: 139 NIDLNSWLKKKKSIDPWERKSYWKN-------MLEAVHTIHQHG---IVHSDLKPANFLI 188

Query: 128 DEFWTAKILDFGLAKLPNEDFVIDKRD--KG---YMAPECYKRTP-----------ISVK 171
            +    K++DFG+A     D     +D   G   YM PE  K              IS K
Sbjct: 189 VDG-MLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPK 247

Query: 172 ADVYGYGIVLLETICCR 188
           +DV+  G +L      +
Sbjct: 248 SDVWSLGCILYYMTYGK 264

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 71.9 bits (177), Expect = 7e-15
 Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 13/120 (10%)

Query: 71  VRNGSLTDIIFCSAERNPY-WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE 129
           V   +L DI+       P    + + +  D  + + + H   +  I+H D+KP NI++  
Sbjct: 98  VDGVTLRDIV---HTEGPMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPANIMISA 151

Query: 130 FWTAKILDFGLAKLPNEDFVIDKRDKG------YMAPECYKRTPISVKADVYGYGIVLLE 183
               K++DFG+A+   +      +         Y++PE  +   +  ++DVY  G VL E
Sbjct: 152 TNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYE 211

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 71.6 bits (176), Expect = 7e-15
 Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 6/97 (6%)

Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR- 153
               D    + +LH +    ++H D+KP NI +      K+ DFGL          + + 
Sbjct: 161 GYLRDTLLALAHLHSQ---GLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQE 217

Query: 154 -DKGYMAPECYKRTPISVKADVYGYGIVLLETICCRK 189
            D  YMAPE   +      ADV+  G+ +LE  C  +
Sbjct: 218 GDPRYMAPELL-QGSYGTAADVFSLGLTILEVACNME 253

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 72.0 bits (177), Expect = 8e-15
 Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 11/122 (9%)

Query: 73  NGSLTDIIFCSAERNPYW--NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
            G L   I  +A++   +  +Q +   + +   + ++HD     ILH DIK QNI + + 
Sbjct: 107 GGDLFKRI--NAQKGVLFQEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKD 161

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETICC 187
            T ++ DFG+A++ N    + +   G   Y++PE  +  P + K+D++  G VL E +C 
Sbjct: 162 GTVQLGDFGIARVLNSTVELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYE-LCT 220

Query: 188 RK 189
            K
Sbjct: 221 LK 222

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 72.0 bits (176), Expect = 9e-15
 Identities = 9/96 (9%), Positives = 23/96 (23%), Gaps = 5/96 (5%)

Query: 93  RVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDK 152
              +   + +    L  +    ++H    P N+ +       + D               
Sbjct: 196 LHILTAQLIRLAANLQSKG---LVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTRGPASS 252

Query: 153 RDKGYMAPECYKR--TPISVKADVYGYGIVLLETIC 186
               Y   E         +   + +  G+ +    C
Sbjct: 253 VPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWC 288

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 72.0 bits (176), Expect = 1e-14
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 15/115 (13%)

Query: 83  SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK 142
           S  ++   + R+++ L V + +  LH      ++H  ++P +I++D+     +  F    
Sbjct: 198 STHKSLVHHARLQLTLQVIRLLASLHHYG---LVHTYLRPVDIVLDQRGGVFLTGFEHLV 254

Query: 143 LPNEDFVIDKRDKGYMAPE-----------CYKRTPISVKADVYGYGIVLLETIC 186
                 V     +G+  PE             +RT ++   D +  G+V+    C
Sbjct: 255 RDGARVVSS-VSRGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWC 308

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 71.3 bits (175), Expect = 1e-14
 Identities = 33/137 (24%), Positives = 52/137 (37%), Gaps = 32/137 (23%)

Query: 73  NGSLTDII-----FCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM 127
           N  L   +         ER  YW         + + +  +H      I+H D+KP N L+
Sbjct: 92  NIDLNSWLKKKKSIDPWERKSYWKN-------MLEAVHTIHQHG---IVHSDLKPANFLI 141

Query: 128 DEFWTAKILDFGLAKLPNEDFVIDKRD--KG---YMAPE-----------CYKRTPISVK 171
            +    K++DFG+A     D     +D   G   YM PE              ++ IS K
Sbjct: 142 VDG-MLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPK 200

Query: 172 ADVYGYGIVLLETICCR 188
           +DV+  G +L      +
Sbjct: 201 SDVWSLGCILYYMTYGK 217

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 70.9 bits (174), Expect = 2e-14
 Identities = 31/123 (25%), Positives = 46/123 (37%), Gaps = 16/123 (13%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVR-IALDVAKGILYLHDECEPPILHCDIKPQNILMDE 129
           +  GSL  +I    +       R         +G+ YLH      ILH D+K  N+L+  
Sbjct: 132 LEGGSLGQLI---KQMGCLPEDRALYYLGQALEGLEYLHTRR---ILHGDVKADNVLLSS 185

Query: 130 F-WTAKILDFGLAKLPNEDFVIDKRDKG--------YMAPECYKRTPISVKADVYGYGIV 180
               A + DFG A     D +      G        +MAPE     P   K D++    +
Sbjct: 186 DGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCM 245

Query: 181 LLE 183
           +L 
Sbjct: 246 MLH 248

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 70.4 bits (173), Expect = 2e-14
 Identities = 34/137 (24%), Positives = 51/137 (37%), Gaps = 32/137 (23%)

Query: 73  NGSLTDII-----FCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM 127
           N  L   +         ER  YW         + + +  +H      I+H D+KP N L+
Sbjct: 111 NIDLNSWLKKKKSIDPWERKSYWKN-------MLEAVHTIHQHG---IVHSDLKPANFLI 160

Query: 128 DEFWTAKILDFGLAKLPNEDFVIDKRD--KG---YMAPECYKRTP-----------ISVK 171
            +    K++DFG+A     D     +D   G   YM PE  K              IS K
Sbjct: 161 VDG-MLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPK 219

Query: 172 ADVYGYGIVLLETICCR 188
           +DV+  G +L      +
Sbjct: 220 SDVWSLGCILYYMTYGK 236

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 71.4 bits (175), Expect = 2e-14
 Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 7/117 (5%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +  GSL D +     +     Q V +A  +A G+ Y+        +H D++  NIL+ E 
Sbjct: 343 MSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGEN 399

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKGY----MAPECYKRTPISVKADVYGYGIVLLE 183
              K+ DFGLA+L  ++    ++   +     APE       ++K+DV+ +GI+L E
Sbjct: 400 LVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE 456

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 70.9 bits (174), Expect = 3e-14
 Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 7/117 (5%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +  GSL D +     +     Q V +A  +A G+ Y+        +H D++  NIL+ E 
Sbjct: 260 MSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGEN 316

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKGY----MAPECYKRTPISVKADVYGYGIVLLE 183
              K+ DFGLA+L  ++    ++   +     APE       ++K+DV+ +GI+L E
Sbjct: 317 LVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTE 373

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 70.6 bits (173), Expect = 3e-14
 Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 7/117 (5%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +  G+L D +     +       + +A  ++  + YL  +     +H ++  +N L+ E 
Sbjct: 298 MTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN---FIHRNLAARNCLVGEN 354

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKGY----MAPECYKRTPISVKADVYGYGIVLLE 183
              K+ DFGL++L   D         +     APE       S+K+DV+ +G++L E
Sbjct: 355 HLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWE 411

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 69.3 bits (170), Expect = 6e-14
 Identities = 38/133 (28%), Positives = 55/133 (41%), Gaps = 26/133 (19%)

Query: 71  VRNGSLTDIIFCSAERNPYWN--QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD 128
             NG+L D+I      N      +  R+   + + + Y+H +    I+H D+KP NI +D
Sbjct: 97  CENGTLYDLI---HSENLNQQRDEYWRLFRQILEALSYIHSQG---IIHRDLKPMNIFID 150

Query: 129 EFWTAKILDFGLAKLPNEDFVIDKRDKG-----------------YMAPE-CYKRTPISV 170
           E    KI DFGLAK  +    I K D                   Y+A E        + 
Sbjct: 151 ESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNE 210

Query: 171 KADVYGYGIVLLE 183
           K D+Y  GI+  E
Sbjct: 211 KIDMYSLGIIFFE 223

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 69.7 bits (170), Expect = 6e-14
 Identities = 18/107 (16%), Positives = 41/107 (38%), Gaps = 14/107 (13%)

Query: 90  WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFV 149
            + R+++ L V + +  LH      ++H  ++P +I++D+     +  F          V
Sbjct: 210 HHARLQLTLQVIRLLASLHHYG---LVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGASAV 266

Query: 150 IDKRDKGYMAPE----------CYKRTPISVKADVYGYGIVLLETIC 186
                +G+  PE           +  T ++   D +  G+ +    C
Sbjct: 267 -SPIGRGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWC 312

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 68.5 bits (168), Expect = 8e-14
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 10/120 (8%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVR-IALDVAKGILYLHDECEPPILHCDIKPQNILMDE 129
           V  GSL+ ++           Q +      + +G+ YLHD     I+H DIK  N+L++ 
Sbjct: 101 VPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQ---IVHRDIKGDNVLINT 157

Query: 130 FW-TAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPI--SVKADVYGYGIVLLE 183
           +    KI DFG +K         +   G   YMAPE   + P      AD++  G  ++E
Sbjct: 158 YSGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIE 217

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 69.2 bits (170), Expect = 8e-14
 Identities = 37/189 (19%), Positives = 69/189 (36%), Gaps = 32/189 (16%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           V+ G     +  +          +++  D A G+ YL  +     +H D+  +N L+ E 
Sbjct: 194 VQGGDFLTFLR-TEGARLRVKTLLQMVGDAAAGMEYLESK---CCIHRDLAARNCLVTEK 249

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKGY-----MAPECYKRTPISVKADVYGYGIVLLETI 185
              KI DFG+++   +                 APE       S ++DV+ +GI+L    
Sbjct: 250 NVLKISDFGMSREEADGVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILL---- 305

Query: 186 CCRKNMEI--DASKPEEIILTNWVYKCFINRE-LNKLVRGTKVDKKNL--ENLVKVGLWC 240
                 E     + P         Y    N++    + +G ++    L  + + ++   C
Sbjct: 306 -----WETFSLGASP---------YPNLSNQQTREFVEKGGRLPCPELCPDAVFRLMEQC 351

Query: 241 VQDEPALRP 249
              EP  RP
Sbjct: 352 WAYEPGQRP 360

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 67.9 bits (166), Expect = 2e-13
 Identities = 32/96 (33%), Positives = 57/96 (59%), Gaps = 15/96 (15%)

Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA-KLPN---EDFVI 150
           ++++ V KG+ YL ++ +  I+H D+KP NIL++     K+ DFG++ +L +     FV 
Sbjct: 135 KVSIAVIKGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFV- 191

Query: 151 DKRDKG---YMAPECYKRTPISVKADVYGYGIVLLE 183
                G   YM+PE  + T  SV++D++  G+ L+E
Sbjct: 192 -----GTRSYMSPERLQGTHYSVQSDIWSMGLSLVE 222

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 67.8 bits (166), Expect = 3e-13
 Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 9/120 (7%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +  GSL D +           + +  +  +A+G+ ++        +H D++  NIL+   
Sbjct: 264 MAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRN---YIHRDLRAANILVSAS 320

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
              KI DFGLA++  ++     R+       + APE       ++K+DV+ +GI+L+E +
Sbjct: 321 LVCKIADFGLARVIEDNEYT-AREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIV 379

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 66.2 bits (162), Expect = 7e-13
 Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 17/117 (14%)

Query: 74  GSLTDIIFCSAERNPYW-NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT 132
           G+LTDI+     +      Q   +   V + + YLH +    ++H DIK  +IL+     
Sbjct: 127 GALTDIV----SQVRLNEEQIATVCEAVLQALAYLHAQ---GVIHRDIKSDSILLTLDGR 179

Query: 133 AKILDFGL-AKLPNEDFVIDKRDK--G---YMAPECYKRTPISVKADVYGYGIVLLE 183
            K+ DFG  A++  +   + KR    G   +MAPE   R+  + + D++  GI+++E
Sbjct: 180 VKLSDFGFCAQISKD---VPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIE 233

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 65.7 bits (161), Expect = 7e-13
 Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 20/123 (16%)

Query: 74  GSLTDIIFCSAERNPYWNQRV--RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 131
            SL        ++     + +  +IA+ + K + +LH +    ++H D+KP N+L++   
Sbjct: 90  TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLS--VIHRDVKPSNVLINALG 147

Query: 132 TAKILDFGLAKLPNEDFVIDKRDKG-------YMAPE----CYKRTPISVKADVYGYGIV 180
             K+ DFG++      +++D   K        YMAPE       +   SVK+D++  GI 
Sbjct: 148 QVKMCDFGISG-----YLVDDVAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGIT 202

Query: 181 LLE 183
           ++E
Sbjct: 203 MIE 205

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 66.3 bits (162), Expect = 1e-12
 Identities = 29/128 (22%), Positives = 44/128 (34%), Gaps = 20/128 (15%)

Query: 74  GSLTDIIFCSAERNPYWNQRVRIAL-DVAKGILYLHDECEPPILHCDIKPQNILMDE--- 129
            +L + +    +   +        L     G+ +LH      I+H D+KP NIL+     
Sbjct: 102 ATLQEYV--EQKDFAHLGLEPITLLQQTTSGLAHLHSLN---IVHRDLKPHNILISMPNA 156

Query: 130 --FWTAKILDFGLAKLPNEDFVIDKRDK------GYMAPECYKRTPI---SVKADVYGYG 178
                A I DFGL K          R        G++APE          +   D++  G
Sbjct: 157 HGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAG 216

Query: 179 IVLLETIC 186
            V    I 
Sbjct: 217 CVFYYVIS 224

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 65.0 bits (159), Expect = 1e-12
 Identities = 29/141 (20%), Positives = 49/141 (34%), Gaps = 32/141 (22%)

Query: 73  NGSLTDIIFCSAERNPYWNQRV--RIALDVAKGILYLHDECEPPILHCDIKPQNILMDE- 129
            GSL D I  +     Y+ +     + L V +G+ Y+H      ++H DIKP NI +   
Sbjct: 95  GGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSM---SLVHMDIKPSNIFISRT 151

Query: 130 ------------------FWTAKILDFGLAKLPNEDFVIDKRDKG---YMAPE-CYKRTP 167
                                 KI D G     +   V     +G   ++A E   +   
Sbjct: 152 SIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISSPQVE----EGDSRFLANEVLQENYT 207

Query: 168 ISVKADVYGYGIVLLETICCR 188
              KAD++   + ++      
Sbjct: 208 HLPKADIFALALTVVCAAGAE 228

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 17/117 (14%)

Query: 74  GSLTDIIFCSAERNPYW-NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT 132
           GSLTD++            Q   +  +  + + +LH      ++H DIK  NIL+    +
Sbjct: 102 GSLTDVV----TETCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGS 154

Query: 133 AKILDFGL-AKLPNEDFVIDKRDK--G---YMAPECYKRTPISVKADVYGYGIVLLE 183
            K+ DFG  A++  E     KR    G   +MAPE   R     K D++  GI+ +E
Sbjct: 155 VKLTDFGFCAQITPE---QSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIE 208

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 64.7 bits (158), Expect = 2e-12
 Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 14/98 (14%)

Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGL-AKLPNEDFVIDKR 153
           +I L   K + +L +  +  I+H DIKP NIL+D     K+ DFG+  +L +    I K 
Sbjct: 129 KITLATVKALNHLKENLK--IIHRDIKPSNILLDRSGNIKLCDFGISGQLVDS---IAKT 183

Query: 154 D----KGYMAPE----CYKRTPISVKADVYGYGIVLLE 183
                + YMAPE       R    V++DV+  GI L E
Sbjct: 184 RDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYE 221

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 64.2 bits (156), Expect = 4e-12
 Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 8/121 (6%)

Query: 68  ERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM 127
           E+ + +    +      +        +  +  VAKG+ +L        +H D+  +NIL+
Sbjct: 170 EKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFL---ASRKCIHRDLAARNILL 226

Query: 128 DEFWTAKILDFGLAKLPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLL 182
            E    KI DFGLA+   +D    ++        +MAPE       ++++DV+ +G++L 
Sbjct: 227 SEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLW 286

Query: 183 E 183
           E
Sbjct: 287 E 287

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 63.9 bits (156), Expect = 4e-12
 Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 15/99 (15%)

Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGL-AKLPNEDFVIDKR 153
           ++ + + K + YL ++    ++H D+KP NIL+DE    K+ DFG+  +L ++     K 
Sbjct: 128 KMTVAIVKALYYLKEKHG--VIHRDVKPSNILLDERGQIKLCDFGISGRLVDD---KAKD 182

Query: 154 D----KGYMAPE-----CYKRTPISVKADVYGYGIVLLE 183
                  YMAPE        +    ++ADV+  GI L+E
Sbjct: 183 RSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVE 221

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 64.3 bits (156), Expect = 5e-12
 Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 13/124 (10%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRV--RIALDVAKGILYLHDECEPPILHCDIKPQNILMD 128
              G L   +    E      +     +  D++  + YLH+     I+H D+KP+NI++ 
Sbjct: 100 CEGGDLRKYL-NQFENCCGLKEGPIRTLLSDISSALRYLHENR---IIHRDLKPENIVLQ 155

Query: 129 ---EFWTAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLL 182
              +    KI+D G AK  ++  +  +   G   Y+APE  ++   +V  D + +G +  
Sbjct: 156 PGPQRLIHKIIDLGYAKELDQGELCTEF-VGTLQYLAPELLEQKKYTVTVDYWSFGTLAF 214

Query: 183 ETIC 186
           E I 
Sbjct: 215 ECIT 218

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 62.9 bits (153), Expect = 1e-11
 Identities = 31/146 (21%), Positives = 51/146 (34%), Gaps = 35/146 (23%)

Query: 73  NGSLTDII-----FCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM 127
           N +L D++          +       + +   +A G+ +LH      I+H D+KPQNIL+
Sbjct: 92  NLNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSLK---IIHRDLKPQNILV 148

Query: 128 D-------------EFWTAKILDFGLAK-LPNEDFVIDKRDK------GYMAPE------ 161
                         E     I DFGL K L +                G+ APE      
Sbjct: 149 STSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESN 208

Query: 162 -CYKRTPISVKADVYGYGIVLLETIC 186
               +  ++   D++  G V    + 
Sbjct: 209 NLQTKRRLTRSIDIFSMGCVFYYILS 234

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 62.4 bits (152), Expect = 2e-11
 Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 15/119 (12%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +  GSL D +          +  ++ +LDV + + YL        +H D+  +N+L+ E 
Sbjct: 269 MAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNN---FVHRDLAARNVLVSED 325

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKG------YMAPECYKRTPISVKADVYGYGIVLLE 183
             AK+ DFGL K                    + APE  +    S K+DV+ +GI+L E
Sbjct: 326 NVAKVSDFGLTK------EASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWE 378

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 60.8 bits (148), Expect = 5e-11
 Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 13/116 (11%)

Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           GS++DII    +     ++   I     KG+ YLH       +H DIK  NIL++    A
Sbjct: 109 GSVSDIIRLRNKTLTE-DEIATILQSTLKGLEYLHFM---RKIHRDIKAGNILLNTEGHA 164

Query: 134 KILDFGL-AKLPNEDFVIDKRDK--G---YMAPECYKRTPISVKADVYGYGIVLLE 183
           K+ DFG+  +L +    + KR+   G   +MAPE  +    +  AD++  GI  +E
Sbjct: 165 KLADFGVAGQLTDT---MAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIE 217

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 60.3 bits (147), Expect = 5e-11
 Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 9/118 (7%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           + NGSL D +   +      N+ + +A  +A+G+ ++ +      +H D++  NIL+ + 
Sbjct: 89  MENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERN---YIHRDLRAANILVSDT 145

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLE 183
            + KI DFGLA+L  ++     R+       + APE       ++K+DV+ +GI+L E
Sbjct: 146 LSCKIADFGLARLIEDN-EYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTE 202

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 60.7 bits (148), Expect = 5e-11
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 16/91 (17%)

Query: 100 VAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKILDFGLAKL--PNEDFVIDKRD 154
           + +G+ YLH      I+H D+KPQNIL+         KI+DFG+++      +     R+
Sbjct: 140 ILEGVYYLHQNN---IVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHACEL----RE 192

Query: 155 K----GYMAPECYKRTPISVKADVYGYGIVL 181
                 Y+APE     PI+   D++  GI+ 
Sbjct: 193 IMGTPEYLAPEILNYDPITTATDMWNIGIIA 223

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 60.3 bits (147), Expect = 6e-11
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 8/97 (8%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR 153
           +  +  VAKG+ +L        +H D+  +NIL+      KI DFGLA+    D     +
Sbjct: 148 LSFSYQVAKGMAFLA---SKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVK 204

Query: 154 DKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
                   +MAPE       + ++DV+ YGI L E  
Sbjct: 205 GNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELF 241

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 61.1 bits (148), Expect = 7e-11
 Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 10/121 (8%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
              G L   +    E  P  +    +   V+ G+ YL ++     +H ++  +N+L+   
Sbjct: 417 AGGGPLHKFLVGKREEIP-VSNVAELLHQVSMGMKYLEEKN---FVHRNLAARNVLLVNR 472

Query: 131 WTAKILDFGLAK-LPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLET 184
             AKI DFGL+K L  +D     R  G     + APEC      S ++DV+ YG+ + E 
Sbjct: 473 HYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEA 532

Query: 185 I 185
           +
Sbjct: 533 L 533

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 60.0 bits (146), Expect = 8e-11
 Identities = 32/138 (23%), Positives = 61/138 (44%), Gaps = 13/138 (9%)

Query: 91  NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-LPNEDFV 149
            Q+++ A+ + KG+ YL        +H D+  +N+L++     KI DFGL K +  +   
Sbjct: 126 KQQLKYAVQICKGMDYLGSRQ---YVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEY 182

Query: 150 IDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETI-CCRKNMEIDASKPEEIIL 203
              +D       + APEC  ++   + +DV+ +G+ L E +  C  +    A   + I  
Sbjct: 183 YTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGP 242

Query: 204 TNWVYKCFINRELNKLVR 221
           T   +       L   ++
Sbjct: 243 T---HGQMTVTRLVNTLK 257

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 60.0 bits (145), Expect = 1e-10
 Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 20/128 (15%)

Query: 91  NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA-----------KILDFG 139
              +  A+ +   I  +HD     I+H DIKP N ++   +              ++D G
Sbjct: 172 GLVISFAMRMLYMIEQVHDC---EIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLG 228

Query: 140 LAK-----LPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEID 194
            +           F       G+   E     P + + D +G    +   +     M++ 
Sbjct: 229 QSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYC-MLFGTYMKVK 287

Query: 195 ASKPEEII 202
               E   
Sbjct: 288 NEGGECKP 295

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 60.1 bits (146), Expect = 1e-10
 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 9/98 (9%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-LPNEDFVIDK 152
           +  +  + KG+ YL        +H D+  +NIL++     KI DFGLAK LP +      
Sbjct: 130 LLYSSQICKGMEYLGSRR---CVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVV 186

Query: 153 RDKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
           R+ G     + APE       S ++DV+ +G+VL E  
Sbjct: 187 REPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELF 224

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 8/120 (6%)

Query: 69  RPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD 128
           R       TD  F  A         +  +  VA+G+ +L  +     +H D+  +N+L+ 
Sbjct: 142 RRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKN---CIHRDVAARNVLLT 198

Query: 129 EFWTAKILDFGLAKLPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLE 183
               AKI DFGLA+    D     +        +MAPE       +V++DV+ YGI+L E
Sbjct: 199 NGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWE 258

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 59.6 bits (145), Expect = 1e-10
 Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 9/101 (8%)

Query: 91  NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-LPNEDFV 149
            + ++    + KG+ YL  +     +H D+  +NIL++     KI DFGL K LP +   
Sbjct: 114 IKLLQYTSQICKGMEYLGTKR---YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEF 170

Query: 150 IDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
              ++ G     + APE    +  SV +DV+ +G+VL E  
Sbjct: 171 FKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELF 211

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 59.9 bits (145), Expect = 1e-10
 Identities = 28/133 (21%), Positives = 48/133 (36%), Gaps = 22/133 (16%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRV--RIALDVAKGILYLHDECEPPILHCDIKPQNILM- 127
              GSL  ++           +     +  DV  G+ +L +     I+H +IKP NI+  
Sbjct: 91  CPCGSLYTVL-EEPSNAYGLPESEFLIVLRDVVGGMNHLRENG---IVHRNIKPGNIMRV 146

Query: 128 ---DEFWTAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPI--------SVKAD 173
              D     K+ DFG A+   +D        G   Y+ P+ Y+R  +            D
Sbjct: 147 IGEDGQSVYKLTDFGAARELEDDEQFVSL-YGTEEYLHPDMYERAVLRKDHQKKYGATVD 205

Query: 174 VYGYGIVLLETIC 186
           ++  G+       
Sbjct: 206 LWSIGVTFYHAAT 218

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 59.4 bits (144), Expect = 2e-10
 Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 21/130 (16%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRV------RIALDVAKGILYLHDECEPPILHCDIKPQN 124
           + N S+          +  +   +       I   V     Y+H+E    I H D+KP N
Sbjct: 125 MENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKN--ICHRDVKPSN 182

Query: 125 ILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG------YMAPE--CYKRTPISVKADVYG 176
           ILMD+    K+ DFG ++     +++DK+ KG      +M PE    + +    K D++ 
Sbjct: 183 ILMDKNGRVKLSDFGESE-----YMVDKKIKGSRGTYEFMPPEFFSNESSYNGAKVDIWS 237

Query: 177 YGIVLLETIC 186
            GI L     
Sbjct: 238 LGICLYVMFY 247

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 58.8 bits (143), Expect = 2e-10
 Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 9/120 (7%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +  G+L D +     +       + +A  ++  + YL  +     +H D+  +N L+ E 
Sbjct: 91  MTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN---FIHRDLAARNCLVGEN 147

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
              K+ DFGL++L   D              + APE       S+K+DV+ +G++L E  
Sbjct: 148 HLVKVADFGLSRLMTGDTYT-AHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIA 206

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 9/101 (8%)

Query: 91  NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK-LPNEDFV 149
            + ++    + KG+ YL  +     +H D+  +NIL++     KI DFGL K LP +   
Sbjct: 145 IKLLQYTSQICKGMEYLGTKR---YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEY 201

Query: 150 IDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
              ++ G     + APE    +  SV +DV+ +G+VL E  
Sbjct: 202 YKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELF 242

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 42/158 (26%), Positives = 66/158 (41%), Gaps = 16/158 (10%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           V  GSL D +      +    Q +  A  + +G+ YLH +     +H D+  +N+L+D  
Sbjct: 117 VPLGSLRDYL---PRHSIGLAQLLLFAQQICEGMAYLHAQH---YIHRDLAARNVLLDND 170

Query: 131 WTAKILDFGLAK-LPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLET 184
              KI DFGLAK +P        R+ G     + APEC K       +DV+ +G+ L E 
Sbjct: 171 RLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYEL 230

Query: 185 I-CCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR 221
           +  C  +        E I +            L +L+ 
Sbjct: 231 LTHCDSSQSPPTKFLELIGIA---QGQMTVLRLTELLE 265

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 58.4 bits (142), Expect = 2e-10
 Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 11/121 (9%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
              G L    +    R+      + +   V+ G+ YL +      +H D+  +N+L+   
Sbjct: 99  AELGPLNK--YLQQNRHVKDKNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQ 153

Query: 131 WTAKILDFGLAK-LPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLET 184
             AKI DFGL+K L  ++     +  G     + APEC      S K+DV+ +G+++ E 
Sbjct: 154 HYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEA 213

Query: 185 I 185
            
Sbjct: 214 F 214

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 58.6 bits (142), Expect = 2e-10
 Identities = 28/133 (21%), Positives = 48/133 (36%), Gaps = 22/133 (16%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRV--RIALDVAKGILYLHDECEPPILHCDIKPQNILM- 127
              GSL  ++           +     +  DV  G+ +L +     I+H +IKP NI+  
Sbjct: 91  CPCGSLYTVL-EEPSNAYGLPESEFLIVLRDVVGGMNHLRENG---IVHRNIKPGNIMRV 146

Query: 128 ---DEFWTAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPI--------SVKAD 173
              D     K+ DFG A+   +D        G   Y+ P+ Y+R  +            D
Sbjct: 147 IGEDGQSVYKLTDFGAARELEDDEQFVSL-YGTEEYLHPDMYERAVLRKDHQKKYGATVD 205

Query: 174 VYGYGIVLLETIC 186
           ++  G+       
Sbjct: 206 LWSIGVTFYHAAT 218

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 59.0 bits (143), Expect = 2e-10
 Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 18/132 (13%)

Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK------G 156
           G+ +LH      I++ D+KP+N+L+D+    +I D GLA    E      + K      G
Sbjct: 301 GLEHLHQRN---IIYRDLKPENVLLDDDGNVRISDLGLAV---ELKAGQTKTKGYAGTPG 354

Query: 157 YMAPECYKRTPISVKADVYGYGIVLLETICCR-----KNMEIDASKPEEIILTNWV-YKC 210
           +MAPE           D +  G+ L E I  R     +  +++  + ++ +L   V Y  
Sbjct: 355 FMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRVLEQAVTYPD 414

Query: 211 FINRELNKLVRG 222
             +         
Sbjct: 415 KFSPASKDFCEA 426

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 59.0 bits (143), Expect = 3e-10
 Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 14/102 (13%)

Query: 92  QRVRI-ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVI 150
            R    A ++  G+  LH E    I++ D+KP+NIL+D+    +I D GLA         
Sbjct: 286 ARAVFYAAEICCGLEDLHRER---IVYRDLKPENILLDDHGHIRISDLGLAV----HVPE 338

Query: 151 DKRDK------GYMAPECYKRTPISVKADVYGYGIVLLETIC 186
            +  K      GYMAPE  K    +   D +  G +L E I 
Sbjct: 339 GQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIA 380

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 58.4 bits (142), Expect = 3e-10
 Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 10/121 (8%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
              G L   +    E  P  +    +   V+ G+ YL ++     +H D+  +N+L+   
Sbjct: 91  AGGGPLHKFLVGKREEIP-VSNVAELLHQVSMGMKYLEEKN---FVHRDLAARNVLLVNR 146

Query: 131 WTAKILDFGLAK-LPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLET 184
             AKI DFGL+K L  +D     R  G     + APEC      S ++DV+ YG+ + E 
Sbjct: 147 HYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEA 206

Query: 185 I 185
           +
Sbjct: 207 L 207

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 58.4 bits (142), Expect = 3e-10
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 17/92 (18%)

Query: 100 VAKGILYLHDECEPPILHCDIKPQNILM----DEFWTAKILDFGLAKL--PNEDFVIDKR 153
           +  G+ YLH +    I H D+KP+NI++          K++DFGLA       +F    +
Sbjct: 124 ILDGVNYLHTKK---IAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEF----K 176

Query: 154 DK----GYMAPECYKRTPISVKADVYGYGIVL 181
           +      ++APE     P+ ++AD++  G++ 
Sbjct: 177 NIFGTPEFVAPEIVNYEPLGLEADMWSIGVIT 208

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 58.5 bits (142), Expect = 3e-10
 Identities = 32/123 (26%), Positives = 49/123 (39%), Gaps = 16/123 (13%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVR-IALDVAKGILYLHDECEPPILHCDIKPQNILMDE 129
            R  SL ++      R        R     +  G  YLH      ++H D+K  N+ ++E
Sbjct: 123 CRRRSLLELH---KRRKALTEPEARYYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNE 176

Query: 130 FWTAKILDFGLAKLPNEDFVIDKRDK------GYMAPECYKRTPISVKADVYGYGIVLLE 183
               KI DFGLA     D    +R K       Y+APE   +   S + DV+  G ++  
Sbjct: 177 DLEVKIGDFGLATKVEYD---GERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYT 233

Query: 184 TIC 186
            + 
Sbjct: 234 LLV 236

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 58.4 bits (142), Expect = 3e-10
 Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 16/118 (13%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVR-IALDVAKGILYLHDECEPPILHCDIKPQNILMDE 129
            R  SL ++      R        R     +  G  YLH      ++H D+K  N+ ++E
Sbjct: 97  CRRRSLLELH---KRRKALTEPEARYYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNE 150

Query: 130 FWTAKILDFGLAKLPNEDFVIDKRDK------GYMAPECYKRTPISVKADVYGYGIVL 181
               KI DFGLA     D    +R K       Y+APE   +   S + DV+  G ++
Sbjct: 151 DLEVKIGDFGLATKVEYD---GERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIM 205

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 58.5 bits (142), Expect = 3e-10
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 9/98 (9%)

Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
           Q V +   +A G+ YL +      +H D+  +NIL++     K+ DFGL+++  +D    
Sbjct: 148 QLVGMLRGIAAGMKYLANMN---YVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAT 204

Query: 152 KRDKG------YMAPECYKRTPISVKADVYGYGIVLLE 183
               G      + APE       +  +DV+ +GIV+ E
Sbjct: 205 YTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWE 242

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 58.0 bits (141), Expect = 3e-10
 Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 11/121 (9%)

Query: 72  RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 131
            +G L   I  S +RNP     +   L VA+G+ YL ++     +H D+  +N ++DE +
Sbjct: 106 CHGDLLQFIR-SPQRNPTVKDLISFGLQVARGMEYLAEQK---FVHRDLAARNCMLDESF 161

Query: 132 TAKILDFGLAKLPNED--FVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLET 184
           T K+ DFGLA+   +   + + +         + A E  +    + K+DV+ +G++L E 
Sbjct: 162 TVKVADFGLARDILDREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWEL 221

Query: 185 I 185
           +
Sbjct: 222 L 222

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 8/97 (8%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR 153
           +  A  VAKG+ +L  +     +H D+  +N+L+      KI DFGLA+    D     R
Sbjct: 175 LCFAYQVAKGMEFLEFKS---CVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVR 231

Query: 154 DKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
                   +MAPE       ++K+DV+ YGI+L E  
Sbjct: 232 GNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIF 268

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 17/92 (18%)

Query: 100 VAKGILYLHDECEPPILHCDIKPQNILM----DEFWTAKILDFGLAKL--PNEDFVIDKR 153
           +  G+ YLH +    I H D+KP+NI++          K++DFGLA       +F    +
Sbjct: 124 ILDGVNYLHTKK---IAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEF----K 176

Query: 154 DK----GYMAPECYKRTPISVKADVYGYGIVL 181
           +      ++APE     P+ ++AD++  G++ 
Sbjct: 177 NIFGTPEFVAPEIVNYEPLGLEADMWSIGVIT 208

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 57.6 bits (140), Expect = 5e-10
 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 13/94 (13%)

Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNIL---MDEFWTAKILDFGLAKLPNEDFVID 151
            +   V   + YLH+     I+H D+KP+N+L    +E     I DFGL+K+     +  
Sbjct: 110 LVIQQVLSAVKYLHENG---IVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGIM-- 164

Query: 152 KRDK----GYMAPECYKRTPISVKADVYGYGIVL 181
                   GY+APE   + P S   D +  G++ 
Sbjct: 165 -STACGTPGYVAPEVLAQKPYSKAVDCWSIGVIT 197

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 57.2 bits (139), Expect = 6e-10
 Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 12/97 (12%)

Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRD 154
               ++A  + Y H +    ++H DIKP+N+L+      KI DFG +          +R 
Sbjct: 113 TYITELANALSYCHSKR---VIHRDIKPENLLLGSAGELKIADFGWSVHAPS----SRRT 165

Query: 155 -----KGYMAPECYKRTPISVKADVYGYGIVLLETIC 186
                  Y+ PE  +      K D++  G++  E + 
Sbjct: 166 DLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLV 202

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 57.3 bits (139), Expect = 6e-10
 Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 8/97 (8%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR 153
           +   + +AKG+ YL +     ++H ++  +N+L+      ++ DFG+A L   D      
Sbjct: 118 LNWGVQIAKGMYYLEEHG---MVHRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQLLY 174

Query: 154 DKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
            +      +MA E       + ++DV+ YG+ + E +
Sbjct: 175 SEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELM 211

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 57.2 bits (139), Expect = 8e-10
 Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 17/92 (18%)

Query: 100 VAKGILYLHDECEPPILHCDIKPQNILM----DEFWTAKILDFGLAKL--PNEDFVIDKR 153
           +  G+ YLH +    I H D+KP+NI++          K++DFG+A       +F    +
Sbjct: 117 ILDGVHYLHSKR---IAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNEF----K 169

Query: 154 DK----GYMAPECYKRTPISVKADVYGYGIVL 181
           +      ++APE     P+ ++AD++  G++ 
Sbjct: 170 NIFGTPEFVAPEIVNYEPLGLEADMWSIGVIT 201

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 57.2 bits (139), Expect = 8e-10
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 8/95 (8%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR 153
           +   + +AKG+ YL D     ++H D+  +N+L+      KI DFGLAKL   +      
Sbjct: 120 LNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHA 176

Query: 154 DKG-----YMAPECYKRTPISVKADVYGYGIVLLE 183
           + G     +MA E       + ++DV+ YG+ + E
Sbjct: 177 EGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWE 211

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 57.0 bits (138), Expect = 9e-10
 Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 18/125 (14%)

Query: 74  GSLTDIIFCSAERNPYWNQRVR---IAL---DVAKGILYLHDECEPPILHCDIKPQNILM 127
           GS+ DII     +  + +  +    IA    +V +G+ YLH       +H D+K  NIL+
Sbjct: 98  GSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKN---GQIHRDVKAGNILL 154

Query: 128 DEFWTAKILDFGLAKLPNEDFVIDKRDK-----G---YMAPECYKRT-PISVKADVYGYG 178
            E  + +I DFG++        I +        G   +MAPE  ++      KAD++ +G
Sbjct: 155 GEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFG 214

Query: 179 IVLLE 183
           I  +E
Sbjct: 215 ITAIE 219

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 10/121 (8%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           + NGSL   +    +      Q V +   +A G+ YL D      +H D+  +NIL++  
Sbjct: 128 MENGSLDSFL-RKHDAQFTVIQLVGMLRGIASGMKYLSDMG---YVHRDLAARNILINSN 183

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKG------YMAPECYKRTPISVKADVYGYGIVLLET 184
              K+ DFGL ++  +D       +G      + +PE       +  +DV+ YGIVL E 
Sbjct: 184 LVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEV 243

Query: 185 I 185
           +
Sbjct: 244 M 244

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 10/119 (8%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           + NGSL   +  + +      Q V +   V  G+ YL D      +H D+  +N+L+D  
Sbjct: 132 MENGSLDTFLR-THDGQFTIMQLVGMLRGVGAGMRYLSDLG---YVHRDLAARNVLVDSN 187

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKG------YMAPECYKRTPISVKADVYGYGIVLLE 183
              K+ DFGL+++  +D        G      + APE       S  +DV+ +G+V+ E
Sbjct: 188 LVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWE 246

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 21/119 (17%)

Query: 74  GSLTDIIFCSAERNPYWNQRVRIAL---DVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           GS  D++               IA    ++ KG+ YLH E     +H DIK  N+L+ E 
Sbjct: 105 GSALDLLEPGPLDETQ------IATILREILKGLDYLHSE---KKIHRDIKAANVLLSEH 155

Query: 131 WTAKILDFGL-AKLPNEDFVIDKRDK--G---YMAPECYKRTPISVKADVYGYGIVLLE 183
              K+ DFG+  +L +      KR+   G   +MAPE  K++    KAD++  GI  +E
Sbjct: 156 GEVKLADFGVAGQLTDT---QIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIE 211

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 8/97 (8%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR 153
           +  +  VAKG+ +L        +H D+  +NIL+ E    KI DFGLA+   +D    ++
Sbjct: 151 ICYSFQVAKGMEFLASRK---CIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRK 207

Query: 154 DKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
                   +MAPE       ++++DV+ +G++L E  
Sbjct: 208 GDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIF 244

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 9/99 (9%)

Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
             +  A  ++  + YL  +     +H DI  +N+L+      K+ DFGL++   +     
Sbjct: 117 SLILYAYQLSTALAYLESKR---FVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYY- 172

Query: 152 KRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
           K  KG     +MAPE       +  +DV+ +G+ + E +
Sbjct: 173 KASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEIL 211

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 56.4 bits (137), Expect = 1e-09
 Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 10/120 (8%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
              G L   +    + +      V  +L + K + YL        +H DI  +NIL+   
Sbjct: 94  YPYGELGHYLE-RNKNSLKVLTLVLYSLQICKAMAYLESIN---CVHRDIAVRNILVASP 149

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
              K+ DFGL++   ++    K         +M+PE       +  +DV+ + + + E +
Sbjct: 150 ECVKLGDFGLSRYIEDEDYY-KASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEIL 208

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 15/90 (16%)

Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTA--KILDFGLAKL--PNEDFVIDKRDK 155
           + +GI ++H      ILH D+KP+NIL         KI+DFGLA+   P E      +  
Sbjct: 196 ICEGIRHMHQM---YILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREKL----KVN 248

Query: 156 ----GYMAPECYKRTPISVKADVYGYGIVL 181
                ++APE      +S   D++  G++ 
Sbjct: 249 FGTPEFLAPEVVNYDFVSFPTDMWSVGVIA 278

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 9/99 (9%)

Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
             + + LDV +G+ YL + C   ++H D+  +N L+ E    K+ DFG+ +   +D    
Sbjct: 105 TLLGMCLDVCEGMAYLEEAC---VIHRDLAARNCLVGENQVIKVSDFGMTRFVLDD-QYT 160

Query: 152 KRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
                     + +PE +  +  S K+DV+ +G+++ E  
Sbjct: 161 SSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVF 199

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 21/106 (19%)

Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
              R A+ VA+G+ YL  +     +H D+  +N+L+      KI DFGL +       + 
Sbjct: 122 TLSRYAVQVAEGMGYLESKR---FIHRDLAARNLLLATRDLVKIGDFGLMRA------LP 172

Query: 152 KRDKGY------------MAPECYKRTPISVKADVYGYGIVLLETI 185
           + D  Y             APE  K    S  +D + +G+ L E  
Sbjct: 173 QNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMF 218

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 56.0 bits (136), Expect = 1e-09
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 12/93 (12%)

Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK---G 156
           +  G+LYLH      ILH D+   N+L+      KI DFGLA          ++     G
Sbjct: 121 IITGMLYLHSHG---ILHRDLTLSNLLLTRNMNIKIADFGLATQLKMP---HEKHYTLCG 174

Query: 157 ---YMAPECYKRTPISVKADVYGYGIVLLETIC 186
              Y++PE   R+   +++DV+  G +    + 
Sbjct: 175 TPNYISPEIATRSAHGLESDVWSLGCMFYTLLI 207

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 17/92 (18%)

Query: 100 VAKGILYLHDECEPPILHCDIKPQNILM----DEFWTAKILDFGLAKL--PNEDFVIDKR 153
           +  G+ YLH      I H D+KP+NI++          KI+DFGLA       +F    +
Sbjct: 123 ILNGVYYLHSLQ---IAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEF----K 175

Query: 154 DK----GYMAPECYKRTPISVKADVYGYGIVL 181
           +      ++APE     P+ ++AD++  G++ 
Sbjct: 176 NIFGTPEFVAPEIVNYEPLGLEADMWSIGVIT 207

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 13/120 (10%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +  GSL D +          +  ++ +LDV + + YL        +H D+  +N+L+ E 
Sbjct: 97  MAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNN---FVHRDLAARNVLVSED 153

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
             AK+ DFGL K          +D G     + APE  +    S K+DV+ +GI+L E  
Sbjct: 154 NVAKVSDFGLTK-----EASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIY 208

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 8/95 (8%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR 153
           V  A  VA+G+ YL        +H D+  +N+L+ E    KI DFGLA+  +      K 
Sbjct: 194 VSCAYQVARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKT 250

Query: 154 DKG-----YMAPECYKRTPISVKADVYGYGIVLLE 183
             G     +MAPE       + ++DV+ +G++L E
Sbjct: 251 TNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWE 285

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 8/97 (8%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR 153
           V     +A+G+ YL  +     +H D+  +N+L+ E    KI DFGLA+  N      K 
Sbjct: 160 VSCTYQLARGMEYLASQK---CIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKT 216

Query: 154 DKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
             G     +MAPE       + ++DV+ +G+++ E  
Sbjct: 217 TNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIF 253

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 56.3 bits (136), Expect = 2e-09
 Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 12/103 (11%)

Query: 93  RVRI-ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
           R R    ++   + YLH E    +++ D+K +N+++D+    KI DFGL K   E     
Sbjct: 249 RARFYGAEIVSALDYLHSEKN--VVYRDLKLENLMLDKDGHIKITDFGLCK---EGIKDG 303

Query: 152 KRDK------GYMAPECYKRTPISVKADVYGYGIVLLETICCR 188
              K       Y+APE  +        D +G G+V+ E +C R
Sbjct: 304 ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGR 346

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 9/99 (9%)

Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
             +  A  ++  + YL  +     +H DI  +N+L+      K+ DFGL++   +     
Sbjct: 492 SLILYAYQLSTALAYLESKR---FVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYY- 547

Query: 152 KRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
           K  KG     +MAPE       +  +DV+ +G+ + E +
Sbjct: 548 KASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEIL 586

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 15/97 (15%)

Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRD 154
           +I   + + I  LH      I+H D+KP+NIL+D+    K+ DFG +   +    +  R+
Sbjct: 128 KIMRALLEVICALHKLN---IVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKL--RE 182

Query: 155 K----GYMAPE------CYKRTPISVKADVYGYGIVL 181
                 Y+APE               + D++  G+++
Sbjct: 183 VCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIM 219

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 8/87 (9%)

Query: 100 VAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKILDFGLAKLPNEDFVIDKR--D 154
           + + + YLH+     I+H D+KP+N+L          KI DFGL+K+     ++      
Sbjct: 157 ILEAVAYLHENG---IVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMKTVCGT 213

Query: 155 KGYMAPECYKRTPISVKADVYGYGIVL 181
            GY APE  +      + D++  GI+ 
Sbjct: 214 PGYCAPEILRGCAYGPEVDMWSVGIIT 240

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 21/144 (14%)

Query: 92  QRVRI-ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVI 150
             +R  A ++  G+ ++H+     +++ D+KP NIL+DE    +I D GLA         
Sbjct: 292 ADMRFYAAEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACD-----FS 343

Query: 151 DKRDK------GYMAPE-CYKRTPISVKADVYGYGIVLLETIC----CRKNMEIDASKPE 199
            K+        GYMAPE   K       AD +  G +L + +      R++   D  + +
Sbjct: 344 KKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEID 403

Query: 200 EIILTNWV-YKCFINRELNKLVRG 222
            + LT  V      + EL  L+ G
Sbjct: 404 RMTLTMAVELPDSFSPELRSLLEG 427

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 55.9 bits (135), Expect = 3e-09
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 11/88 (12%)

Query: 100 VAKGILYLHDECEPPILHCDIKPQNILM--DEFWTAKILDFGLAKLPNEDFVIDKRDK-- 155
             +G+ ++H+     I+H DIKP+NI+    +  + KI+DFGLA   N D ++  +    
Sbjct: 158 ACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIV--KVTTA 212

Query: 156 --GYMAPECYKRTPISVKADVYGYGIVL 181
              + APE   R P+    D++  G++ 
Sbjct: 213 TAEFAAPEIVDREPVGFYTDMWAIGVLG 240

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 55.6 bits (135), Expect = 3e-09
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 16/91 (17%)

Query: 100 VAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKILDFGLAKL--PNEDFVIDKRD 154
           + + I Y H      I+H ++KP+N+L+    +    K+ DFGLA     +E +      
Sbjct: 114 ILESIAYCHSNG---IVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAW----HG 166

Query: 155 K----GYMAPECYKRTPISVKADVYGYGIVL 181
                GY++PE  K+ P S   D++  G++L
Sbjct: 167 FAGTPGYLSPEVLKKDPYSKPVDIWACGVIL 197

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 16/91 (17%)

Query: 100 VAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKILDFGLAKL--PNEDFVIDKRD 154
           + + I Y H      I+H ++KP+N+L+    +    K+ DFGLA     +E +      
Sbjct: 137 ILESIAYCHSNG---IVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAW----HG 189

Query: 155 K----GYMAPECYKRTPISVKADVYGYGIVL 181
                GY++PE  K+ P S   D++  G++L
Sbjct: 190 FAGTPGYLSPEVLKKDPYSKPVDIWACGVIL 220

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 55.3 bits (134), Expect = 3e-09
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 15/90 (16%)

Query: 100 VAKGILYLHDECEPPILHCDIKPQNILM--DEFWTAKILDFGLAKL--PNEDFVIDKRDK 155
           V + + +LH      I H DI+P+NI+       T KI++FG A+   P ++F    R  
Sbjct: 111 VCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNF----RLL 163

Query: 156 ----GYMAPECYKRTPISVKADVYGYGIVL 181
                Y APE ++   +S   D++  G ++
Sbjct: 164 FTAPEYYAPEVHQHDVVSTATDMWSLGTLV 193

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score = 55.5 bits (134), Expect = 3e-09
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 8/95 (8%)

Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDE------FWTAKILDFGLAKLPNEDF 148
           +I+  +  G+ Y+H  C   I+H DIKP+N+LM+           KI D G A   +E +
Sbjct: 135 QISKQLLLGLDYMHRRCG--IIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHY 192

Query: 149 VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLE 183
               + + Y +PE     P    AD++    ++ E
Sbjct: 193 TNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFE 227

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 55.5 bits (134), Expect = 4e-09
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 9/92 (9%)

Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKILDFGLAKLPNEDFVID 151
           RI   V  GI Y+H      I+H D+KP+N+L+    +    +I+DFGL+        + 
Sbjct: 130 RIIRQVLSGITYMHKNK---IVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMK 186

Query: 152 KR--DKGYMAPECYKRTPISVKADVYGYGIVL 181
            +     Y+APE         K DV+  G++L
Sbjct: 187 DKIGTAYYIAPEVLHG-TYDEKCDVWSTGVIL 217

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 55.1 bits (133), Expect = 4e-09
 Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 18/139 (12%)

Query: 59  KLTSVSGKIERPV-------RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDEC 111
            L  +  + E          ++G L + I  +   NP     +   L VAKG+ +L  + 
Sbjct: 154 SLLGICLRSEGSPLVVLPYMKHGDLRNFIR-NETHNPTVKDLIGFGLQVAKGMKFLASK- 211

Query: 112 EPPILHCDIKPQNILMDEFWTAKILDFGLAK--LPNEDFVIDKRDKG-----YMAPECYK 164
               +H D+  +N ++DE +T K+ DFGLA+     E   +  +        +MA E  +
Sbjct: 212 --KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQ 269

Query: 165 RTPISVKADVYGYGIVLLE 183
               + K+DV+ +G++L E
Sbjct: 270 TQKFTTKSDVWSFGVLLWE 288

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 8/95 (8%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR 153
           +   + +AKG+ YL D     ++H D+  +N+L+      KI DFGLAKL   +      
Sbjct: 120 LNWCVQIAKGMNYLEDRR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHA 176

Query: 154 DKG-----YMAPECYKRTPISVKADVYGYGIVLLE 183
           + G     +MA E       + ++DV+ YG+ + E
Sbjct: 177 EGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWE 211

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 54.9 bits (133), Expect = 4e-09
 Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 7/96 (7%)

Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
           Q + +  DV +G+ +L        +H D+  +N L+D     K+ DFG+ +   +D  + 
Sbjct: 105 QLLEMCYDVCEGMAFLESHQ---FIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVS 161

Query: 152 KRDKGY----MAPECYKRTPISVKADVYGYGIVLLE 183
                +     APE +     S K+DV+ +GI++ E
Sbjct: 162 SVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWE 197

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 11/119 (9%)

Query: 72  RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 131
           ++G L + I  +   NP     +   L VAKG+ YL  +     +H D+  +N ++DE +
Sbjct: 110 KHGDLRNFIR-NETHNPTVKDLIGFGLQVAKGMKYLASKK---FVHRDLAARNCMLDEKF 165

Query: 132 TAKILDFGLAKLPNED--FVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLE 183
           T K+ DFGLA+   +   + +  +        +MA E  +    + K+DV+ +G++L E
Sbjct: 166 TVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWE 224

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 55.1 bits (133), Expect = 4e-09
 Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 17/121 (14%)

Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA 133
           GS+TD+I  +            I  ++ +G+ +LH      ++H DIK QN+L+ E    
Sbjct: 112 GSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHK---VIHRDIKGQNVLLTENAEV 168

Query: 134 KILDFGL-AKLPNEDFVIDKRDK--G---YMAPE-----CYKRTPISVKADVYGYGIVLL 182
           K++DFG+ A+L      + +R+   G   +MAPE              K+D++  GI  +
Sbjct: 169 KLVDFGVSAQLDRT---VGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAI 225

Query: 183 E 183
           E
Sbjct: 226 E 226

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 55.5 bits (134), Expect = 4e-09
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 9/92 (9%)

Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKILDFGLAKLPNEDFVID 151
            I   V  G+ YLH      I+H D+KP+N+L+   ++    KI+DFGL+ +      + 
Sbjct: 140 VIIKQVLSGVTYLHKHN---IVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKKMK 196

Query: 152 KR--DKGYMAPECYKRTPISVKADVYGYGIVL 181
           +R     Y+APE  ++     K DV+  G++L
Sbjct: 197 ERLGTAYYIAPEVLRK-KYDEKCDVWSIGVIL 227

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 55.1 bits (133), Expect = 5e-09
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 8/97 (8%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR 153
           V     +A+G+ YL        +H D+  +N+L+ E    KI DFGLA+  N      K 
Sbjct: 206 VSCTYQLARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKT 262

Query: 154 DKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
             G     +MAPE       + ++DV+ +G+++ E  
Sbjct: 263 TNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIF 299

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 55.0 bits (133), Expect = 5e-09
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 9/88 (10%)

Query: 100 VAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKILDFGLAK-LPNEDFVIDKR-- 153
           + + + Y HD     I+H D+KP  +L+   +     K+  FG+A  L     V   R  
Sbjct: 139 ILEALRYCHDNN---IIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLVAGGRVG 195

Query: 154 DKGYMAPECYKRTPISVKADVYGYGIVL 181
              +MAPE  KR P     DV+G G++L
Sbjct: 196 TPHFMAPEVVKREPYGKPVDVWGCGVIL 223

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 55.1 bits (133), Expect = 6e-09
 Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 9/87 (10%)

Query: 100 VAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKILDFGLAKLPNEDFVIDKR--D 154
           +  GI YLH      I+H DIKP+NIL+   +     KI+DFGL+   ++D+ +  R   
Sbjct: 155 ILSGICYLHKHN---IVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDYKLRDRLGT 211

Query: 155 KGYMAPECYKRTPISVKADVYGYGIVL 181
             Y+APE  K+   + K DV+  G+++
Sbjct: 212 AYYIAPEVLKK-KYNEKCDVWSCGVIM 237

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 54.2 bits (131), Expect = 7e-09
 Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 11/100 (11%)

Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
           Q + +  DV + + YL  +     LH D+  +N L+++    K+ DFGL++   +D    
Sbjct: 121 QLLEMCKDVCEAMEYLESKQ---FLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDD--EY 175

Query: 152 KRDKG------YMAPECYKRTPISVKADVYGYGIVLLETI 185
               G      +  PE    +  S K+D++ +G+++ E  
Sbjct: 176 TSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIY 215

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 54.2 bits (131), Expect = 7e-09
 Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 8/95 (8%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR 153
           +  A  +++G+ YL +     ++H D+  +NIL+ E    KI DFGL++   E+    KR
Sbjct: 153 ISFAWQISQGMQYLAEMK---LVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKR 209

Query: 154 DKG-----YMAPECYKRTPISVKADVYGYGIVLLE 183
            +G     +MA E       + ++DV+ +G++L E
Sbjct: 210 SQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWE 244

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 54.3 bits (131), Expect = 7e-09
 Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 13/94 (13%)

Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKILDFGLAKLPNEDFVID 151
            I  D+   I +LH      I H D+KP+N+L    ++    K+ DFG AK   ++ +  
Sbjct: 132 EIMRDIGTAIQFLHSHN---IAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQNAL-- 186

Query: 152 KRDK----GYMAPECYKRTPISVKADVYGYGIVL 181
            +       Y+APE           D++  G+++
Sbjct: 187 -QTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIM 219

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 54.5 bits (132), Expect = 7e-09
 Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 13/103 (12%)

Query: 93  RVRI-ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
           R R    ++   + YLH      +++ DIK +N+++D+    KI DFGL K   E     
Sbjct: 106 RARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCK---EGISDG 159

Query: 152 KRDK---G---YMAPECYKRTPISVKADVYGYGIVLLETICCR 188
              K   G   Y+APE  +        D +G G+V+ E +C R
Sbjct: 160 ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGR 202

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 54.6 bits (132), Expect = 7e-09
 Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 17/106 (16%)

Query: 91  NQRVRI-ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFV 149
            + V++   ++   + YL ++    I+H D+KP NIL+DE     I DF +A        
Sbjct: 114 EETVKLFICELVMALDYLQNQ---RIIHRDMKPDNILLDEHGHVHITDFNIAA----MLP 166

Query: 150 IDKRD------KGYMAPECYKRTPI---SVKADVYGYGIVLLETIC 186
            + +       K YMAPE +        S   D +  G+   E + 
Sbjct: 167 RETQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLR 212

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 54.1 bits (131), Expect = 7e-09
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 14/93 (15%)

Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFV------IDKR 153
           +A  + Y H+     ++H DIKP+N+LM      KI DFG +              +D  
Sbjct: 123 LADALHYCHERK---VIHRDIKPENLLMGYKGELKIADFGWSVHAPSLRRRTMCGTLD-- 177

Query: 154 DKGYMAPECYKRTPISVKADVYGYGIVLLETIC 186
              Y+ PE  +      K D++  G++  E + 
Sbjct: 178 ---YLPPEMIEGKTHDEKVDLWCAGVLCYEFLV 207

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 54.3 bits (131), Expect = 8e-09
 Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 8/97 (8%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR 153
           VR  +D+A G+ YL        +H D+  +N ++ E  T  + DFGL++         + 
Sbjct: 140 VRFMVDIACGMEYLSSRN---FIHRDLAARNCMLAEDMTVCVADFGLSRKIYSGDYYRQG 196

Query: 154 DKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
                   ++A E       +V +DV+ +G+ + E +
Sbjct: 197 CASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIM 233

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 54.2 bits (131), Expect = 9e-09
 Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 8/97 (8%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR 153
           +++A ++A G+ YL+       +H D+  +N ++ E +T KI DFG+ +   E     K 
Sbjct: 141 IQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKG 197

Query: 154 DKGY-----MAPECYKRTPISVKADVYGYGIVLLETI 185
            KG      M+PE  K    +  +DV+ +G+VL E  
Sbjct: 198 GKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIA 234

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 9/88 (10%)

Query: 100 VAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKILDFGLAK-LPNEDFVIDKR-- 153
           + + +L+ H      ++H ++KP+N+L+    +    K+ DFGLA  +  E         
Sbjct: 119 ILEAVLHCHQMG---VVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAG 175

Query: 154 DKGYMAPECYKRTPISVKADVYGYGIVL 181
             GY++PE  ++ P     D++  G++L
Sbjct: 176 TPGYLSPEVLRKDPYGKPVDLWACGVIL 203

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 24/121 (19%)

Query: 74  GSLTDIIFCSAERNPYWNQRVRIAL---DVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           GS +D++    E +    Q V IA       +G+ YLH      ++H D+K  NIL+ E 
Sbjct: 138 GSASDLL----EVHKKPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEP 190

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDK--G---YMAPE---CYKRTPISVKADVYGYGIVLL 182
              K+ DFG A +      +   +   G   +MAPE            K DV+  GI  +
Sbjct: 191 GLVKLGDFGSASI------MAPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCI 244

Query: 183 E 183
           E
Sbjct: 245 E 245

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 53.6 bits (129), Expect = 1e-08
 Identities = 14/113 (12%), Positives = 28/113 (24%), Gaps = 31/113 (27%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +R GSL ++     + +P     +R    +A      H      +      P  + +   
Sbjct: 113 IRGGSLQEVA----DTSPSPVGAIRAMQSLAAAADAAHRA---GVALSIDHPSRVRVSID 165

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLE 183
               +                      M          + + D+ G G  L  
Sbjct: 166 GDVVLAYP-----------------ATMPDA-------NPQDDIRGIGASLYA 194

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score = 54.3 bits (130), Expect = 1e-08
 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 13/103 (12%)

Query: 93  RVRI-ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
                A ++A G+ +L  +    I++ D+K  N+++D     KI DFG+ K   E+    
Sbjct: 443 HAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCK---ENIWDG 496

Query: 152 KRDK---G---YMAPECYKRTPISVKADVYGYGIVLLETICCR 188
              K   G   Y+APE     P     D + +G++L E +  +
Sbjct: 497 VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQ 539

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 53.7 bits (130), Expect = 1e-08
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 3/41 (7%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK 142
           +G+ +LH      ++H D+KPQNIL+      K+ DFGLA+
Sbjct: 131 RGLDFLHSHR---VVHRDLKPQNILVTSSGQIKLADFGLAR 168

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 15/96 (15%)

Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKILDFGLAKLPNEDFVID 151
            I   +   + ++HD     ++H D+KP+N+L    ++    KI+DFG A+L   D   +
Sbjct: 110 YIMRKLVSAVSHMHDVG---VVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPD---N 163

Query: 152 KRDK------GYMAPECYKRTPISVKADVYGYGIVL 181
           +  K       Y APE   +       D++  G++L
Sbjct: 164 QPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVIL 199

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 53.6 bits (129), Expect = 1e-08
 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 19/99 (19%)

Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKL--PNEDFVIDK 152
            I   + + + +LH      I+H D+KP+NIL+D+    ++ DFG +    P E      
Sbjct: 204 SIMRSLLEAVSFLHANN---IVHRDLKPENILLDDNMQIRLSDFGFSCHLEPGEKL---- 256

Query: 153 RDK----GYMAPE------CYKRTPISVKADVYGYGIVL 181
           R+     GY+APE               + D++  G++L
Sbjct: 257 RELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVIL 295

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 53.3 bits (128), Expect = 2e-08
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 14/98 (14%)

Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILM--DEFWTAKILDFGLAKLPNEDFVIDK 152
            I   +   + YLH++    I H DIKP+N L   ++ +  K++DFGL+K   +    + 
Sbjct: 172 NIMRQIFSALHYLHNQ---GICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEY 228

Query: 153 RD-------KGYMAPE--CYKRTPISVKADVYGYGIVL 181
                      ++APE           K D +  G++L
Sbjct: 229 YGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLL 266

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 20/122 (16%)

Query: 74  GSLTDIIFCSAERNPYWNQRVR-IALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT 132
           G++  I+            +++ +   + + + +LH +    I+H D+K  N+LM     
Sbjct: 101 GAVDAIM--LELDRGLTEPQIQVVCRQMLEALNFLHSK---RIIHRDLKAGNVLMTLEGD 155

Query: 133 AKILDFGL-AKLPNEDFVIDKRDK--G---YMAPE-----CYKRTPISVKADVYGYGIVL 181
            ++ DFG+ AK       + KRD   G   +MAPE       K TP   KAD++  GI L
Sbjct: 156 IRLADFGVSAKNLKT---LQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITL 212

Query: 182 LE 183
           +E
Sbjct: 213 IE 214

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 9/92 (9%)

Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKILDFGLAKLPNEDFVID 151
           RI   V  GI Y+H      I+H D+KP+NIL+   ++    KI+DFGL+    ++  + 
Sbjct: 125 RIIKQVFSGITYMHKHN---IVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMK 181

Query: 152 KR--DKGYMAPECYKRTPISVKADVYGYGIVL 181
            R     Y+APE  +      K DV+  G++L
Sbjct: 182 DRIGTAYYIAPEVLRG-TYDEKCDVWSAGVIL 212

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 3/41 (7%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK 142
           +G+ +LH  C   I+H D+KP+NIL+    T K+ DFGLA+
Sbjct: 131 RGLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLAR 168

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 8/97 (8%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR 153
           ++  +D+A G+ YL +      LH D+  +N ++ +  T  + DFGL+K         + 
Sbjct: 150 LKFMVDIALGMEYLSNRN---FLHRDLAARNCMLRDDMTVCVADFGLSKKIYSGDYYRQG 206

Query: 154 DKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
                   ++A E       + K+DV+ +G+ + E  
Sbjct: 207 RIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIA 243

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 52.5 bits (127), Expect = 2e-08
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 3/41 (7%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK 142
           KG+ + H      +LH D+KPQN+L++     K+ +FGLA+
Sbjct: 112 KGLGFCHSRN---VLHRDLKPQNLLINRNGELKLANFGLAR 149

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 53.3 bits (128), Expect = 2e-08
 Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 7/92 (7%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA--KILDFGLAKL--PNEDFV 149
           V     V KG+ ++H+      +H D+KP+NI+     +   K++DFGL     P +   
Sbjct: 258 VEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVK 314

Query: 150 IDKRDKGYMAPECYKRTPISVKADVYGYGIVL 181
           +      + APE  +  P+    D++  G++ 
Sbjct: 315 VTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLS 346

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score = 52.6 bits (127), Expect = 3e-08
 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 13/103 (12%)

Query: 93  RVRI-ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
                A ++A G+ +L  +    I++ D+K  N+++D     KI DFG+ K   E+    
Sbjct: 122 HAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCK---ENIWDG 175

Query: 152 KRDK---G---YMAPECYKRTPISVKADVYGYGIVLLETICCR 188
              K   G   Y+APE     P     D + +G++L E +  +
Sbjct: 176 VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQ 218

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 52.5 bits (127), Expect = 3e-08
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 3/41 (7%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK 142
           +G+ + H      +LH D+KPQN+L++     K+ DFGLA+
Sbjct: 114 QGLAFCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLAR 151

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score = 52.6 bits (127), Expect = 3e-08
 Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 13/104 (12%)

Query: 92  QRVRI-ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVI 150
            R R  A ++   +++LHD+    I++ D+K  N+L+D     K+ DFG+ K   E    
Sbjct: 124 ARARFYAAEIISALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGMCK---EGICN 177

Query: 151 DKRDK---G---YMAPECYKRTPISVKADVYGYGIVLLETICCR 188
                   G   Y+APE  +        D +  G++L E +C  
Sbjct: 178 GVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGH 221

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 52.2 bits (126), Expect = 3e-08
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 3/41 (7%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK 142
           +G+ + H      ILH D+KPQN+L++     K+ DFGLA+
Sbjct: 130 RGVAHCHQHR---ILHRDLKPQNLLINSDGALKLADFGLAR 167

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 52.1 bits (126), Expect = 3e-08
 Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 3/41 (7%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK 142
            GI Y HD     +LH D+KPQN+L++     KI DFGLA+
Sbjct: 111 NGIAYCHDRR---VLHRDLKPQNLLINREGELKIADFGLAR 148

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 52.2 bits (126), Expect = 4e-08
 Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 3/40 (7%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA 141
           +G+ + H+     ILH D+KPQN+L+++    K+ DFGLA
Sbjct: 119 QGLAFCHENK---ILHRDLKPQNLLINKRGQLKLGDFGLA 155

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 12/95 (12%)

Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK---G 156
           +A  + YLH      I++ D+KP+NIL+D      + DFGL K   E+   +       G
Sbjct: 148 IASALGYLHSL---NIVYRDLKPENILLDSQGHIVLTDFGLCK---ENIEHNSTTSTFCG 201

Query: 157 ---YMAPECYKRTPISVKADVYGYGIVLLETICCR 188
              Y+APE   + P     D +  G VL E +   
Sbjct: 202 TPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGL 236

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 51.8 bits (125), Expect = 5e-08
 Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 3/41 (7%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK 142
           +G+ YLH      ILH D+KP N+L+DE    K+ DFGLAK
Sbjct: 123 QGLEYLHQHW---ILHRDLKPNNLLLDENGVLKLADFGLAK 160

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 51.8 bits (125), Expect = 5e-08
 Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 3/41 (7%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAK 142
           +G+ Y H +    +LH D+KPQN+L++E    K+ DFGLA+
Sbjct: 111 RGLAYCHRQK---VLHRDLKPQNLLINERGELKLADFGLAR 148

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score = 52.0 bits (125), Expect = 6e-08
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 13/103 (12%)

Query: 93  RVRI-ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
             R  + +++  + YLH+     I++ D+K  N+L+D     K+ D+G+ K   E     
Sbjct: 154 HARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCK---EGLRPG 207

Query: 152 KRDK---G---YMAPECYKRTPISVKADVYGYGIVLLETICCR 188
                  G   Y+APE  +        D +  G+++ E +  R
Sbjct: 208 DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGR 250

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 51.5 bits (124), Expect = 6e-08
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 4/51 (7%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEF-WTAKILDFGLAKL--PNEDFV 149
           + I  LH      + H DIKP N+L++E   T K+ DFG AK   P+E  V
Sbjct: 140 RSIGCLHLPS-VNVCHRDIKPHNVLVNEADGTLKLCDFGSAKKLSPSEPNV 189

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score = 51.5 bits (124), Expect = 6e-08
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 13/103 (12%)

Query: 93  RVRI-ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID 151
             R  + +++  + YLH+     I++ D+K  N+L+D     K+ D+G+ K   E     
Sbjct: 111 HARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCK---EGLRPG 164

Query: 152 KRDK---G---YMAPECYKRTPISVKADVYGYGIVLLETICCR 188
                  G   Y+APE  +        D +  G+++ E +  R
Sbjct: 165 DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGR 207

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score = 51.4 bits (124), Expect = 7e-08
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 12/98 (12%)

Query: 97  ALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK- 155
           A ++  G+ +LH +    I++ D+K  NIL+D+    KI DFG+ K   E+ + D +   
Sbjct: 124 AAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGMCK---ENMLGDAKTNT 177

Query: 156 --G---YMAPECYKRTPISVKADVYGYGIVLLETICCR 188
             G   Y+APE       +   D + +G++L E +  +
Sbjct: 178 FCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQ 215

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 51.7 bits (124), Expect = 7e-08
 Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 16/96 (16%)

Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKILDFGLAKL--PNEDFV 149
            I   + + I YLH      I H D+KP+N+L          K+ DFG AK    +    
Sbjct: 165 EIMKSIGEAIQYLHSIN---IAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSL- 220

Query: 150 IDKRDK----GYMAPECYKRTPISVKADVYGYGIVL 181
                      Y+APE           D++  G+++
Sbjct: 221 ---TTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIM 253

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 51.6 bits (124), Expect = 7e-08
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 15/97 (15%)

Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKILDFGLAKLPNEDFVID 151
                +   + YLH+     I+H D+KP+N+L+   +E    KI DFG +K+  E  ++ 
Sbjct: 243 LYFYQMLLAVQYLHENG---IIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLM- 298

Query: 152 KRDK----GYMAPE---CYKRTPISVKADVYGYGIVL 181
            R       Y+APE          +   D +  G++L
Sbjct: 299 -RTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVIL 334

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 51.5 bits (124), Expect = 7e-08
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 14/96 (14%)

Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILM----DEFWTAKILDFGLAK-LPNEDFV 149
            +   + K + YLH +    ++H D+KP NIL         + +I DFG AK L  E+ +
Sbjct: 120 AVLFTITKTVEYLHAQG---VVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGL 176

Query: 150 IDKRDK----GYMAPECYKRTPISVKADVYGYGIVL 181
           +          ++APE  +R       D++  G++L
Sbjct: 177 L--MTPCYTANFVAPEVLERQGYDAACDIWSLGVLL 210

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 51.5 bits (124), Expect = 7e-08
 Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 8/95 (8%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR 153
           + +A  VA G++YL        +H D+  +N L+ +    KI DFG+++           
Sbjct: 161 LAVASQVAAGMVYLAGLH---FVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVG 217

Query: 154 DKG-----YMAPECYKRTPISVKADVYGYGIVLLE 183
            +      +M PE       + ++DV+ +G+VL E
Sbjct: 218 GRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWE 252

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 51.5 bits (124), Expect = 8e-08
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA 141
            G+ Y+H      ILH D+K  N+L+      K+ DFGLA
Sbjct: 135 NGLYYIHRNK---ILHRDMKAANVLITRDGVLKLADFGLA 171

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 51.4 bits (123), Expect = 8e-08
 Identities = 22/127 (17%), Positives = 40/127 (31%), Gaps = 25/127 (19%)

Query: 74  GSLTDIIFCSAERNPYWNQRVRIAL---DVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           GS  D+I             + IA     V K + Y+H       +H  +K  +IL+   
Sbjct: 111 GSAKDLI---CTHFMDGMNELAIAYILQGVLKALDYIHHM---GYVHRSVKASHILISVD 164

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKGY------------MAPECYKRTPI--SVKADVYG 176
               +                ++   +            ++PE  ++       K+D+Y 
Sbjct: 165 GKVYLSGLRSNLSMISH--GQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYS 222

Query: 177 YGIVLLE 183
            GI   E
Sbjct: 223 VGITACE 229

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA 141
            GI + H      I+H DIKP+NIL+ +    K+ DFG A
Sbjct: 135 NGIGFCHSHN---IIHRDIKPENILVSQSGVVKLCDFGFA 171

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 15/97 (15%)

Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKILDFGLAKLPNEDFVID 151
                +   + YLH+     I+H D+KP+N+L+   +E    KI DFG +K+  E  ++ 
Sbjct: 118 LYFYQMLLAVQYLHENG---IIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLM- 173

Query: 152 KRDK----GYMAPE---CYKRTPISVKADVYGYGIVL 181
            R       Y+APE          +   D +  G++L
Sbjct: 174 -RTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVIL 209

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 8/86 (9%)

Query: 106 YLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK--G---YMAP 160
           YLH +    I+H D+KP+NIL++E    +I DFG AK+ + +    + +   G   Y++P
Sbjct: 145 YLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSP 201

Query: 161 ECYKRTPISVKADVYGYGIVLLETIC 186
           E          +D++  G ++ + + 
Sbjct: 202 ELLTEKSACKSSDLWALGCIIYQLVA 227

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 6/51 (11%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMD-EFWTAKILDFGLAK--LPNEDFV 149
           + + Y+H      I H DIKPQN+L+D      K++DFG AK  +  E  V
Sbjct: 152 RSLAYIHSIG---ICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAGEPNV 199

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 8/97 (8%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR 153
           + IA  +A G++YL  +     +H D+  +N L+      KI DFG+++           
Sbjct: 136 LHIASQIASGMVYLASQH---FVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVG 192

Query: 154 DKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
                   +M PE       + ++DV+ +G++L E  
Sbjct: 193 GHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIF 229

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 9/89 (10%)

Query: 99  DVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG-- 156
           D+ KGI YLH +    I+H DIKP N+L+ E    KI DFG++        +     G  
Sbjct: 145 DLIKGIEYLHYQK---IIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVGTP 201

Query: 157 -YMAPEC---YKRTPISVKADVYGYGIVL 181
            +MAPE     ++       DV+  G+ L
Sbjct: 202 AFMAPESLSETRKIFSGKALDVWAMGVTL 230

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score = 50.6 bits (122), Expect = 1e-07
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 12/92 (13%)

Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK---G--- 156
            + +LH +    I++ D+KP+NI+++     K+ DFGL K   E            G   
Sbjct: 133 ALGHLHQK---GIIYRDLKPENIMLNHQGHVKLTDFGLCK---ESIHDGTVTHTFCGTIE 186

Query: 157 YMAPECYKRTPISVKADVYGYGIVLLETICCR 188
           YMAPE   R+  +   D +  G ++ + +   
Sbjct: 187 YMAPEILMRSGHNRAVDWWSLGALMYDMLTGA 218

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 9/87 (10%)

Query: 100 VAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKILDFGLAKLPNEDFVIDKR--D 154
           V  GI Y+H      I+H D+KP+NIL+   ++    KI+DFGL+    ++  +  R   
Sbjct: 130 VFSGITYMHKHN---IVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGT 186

Query: 155 KGYMAPECYKRTPISVKADVYGYGIVL 181
             Y+APE  +      K DV+  G++L
Sbjct: 187 AYYIAPEVLRG-TYDEKCDVWSAGVIL 212

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA 141
           + + + H       +H D+KP+NIL+ +    K+ DFG A
Sbjct: 113 QAVNFCHKHN---CIHRDVKPENILITKHSVIKLCDFGFA 149

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 8/46 (17%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTA-----KILDFGLAK 142
            G+ + H       LH D+KPQN+L+     +     KI DFGLA+
Sbjct: 143 NGVNFCHSRR---CLHRDLKPQNLLLSVSDASETPVLKIGDFGLAR 185

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 16/80 (20%)

Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKILDFGLAKL--PNEDFV 149
            +  DVA  + +LH++    I H D+KP+NIL    ++    KI DF L      N D  
Sbjct: 115 VVVQDVASALDFLHNKG---IAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCS 171

Query: 150 IDKRDK--------GYMAPE 161
                +         YMAPE
Sbjct: 172 PISTPELLTPCGSAEYMAPE 191

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 12/95 (12%)

Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK---G 156
           +A  + +LH      I++ D+KP+NIL+DE    K+ DFGL+K   E    +K+     G
Sbjct: 135 LALALDHLHSLG---IIYRDLKPENILLDEEGHIKLTDFGLSK---ESIDHEKKAYSFCG 188

Query: 157 ---YMAPECYKRTPISVKADVYGYGIVLLETICCR 188
              YMAPE   R   +  AD + +G+++ E +   
Sbjct: 189 TVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGT 223

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 11/98 (11%)

Query: 91  NQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVI 150
            Q +  A DVA+G+ YL  +     +H D+  +NIL+ E + AKI DFGL++   ++ V 
Sbjct: 142 QQLLHFAADVARGMDYLSQKQ---FIHRDLAARNILVGENYVAKIADFGLSR--GQE-VY 195

Query: 151 DKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLE 183
            K+  G     +MA E    +  +  +DV+ YG++L E
Sbjct: 196 VKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWE 233

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 11/100 (11%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW---TAKILDFGLAKLPNEDFVI 150
           + +A D+A G  YL +      +H DI  +N L+        AKI DFG+A+        
Sbjct: 143 LHVARDIACGCQYLEENH---FIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYY 199

Query: 151 DKRDKGY-----MAPECYKRTPISVKADVYGYGIVLLETI 185
            K          M PE +     + K D + +G++L E  
Sbjct: 200 RKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIF 239

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 9/93 (9%)

Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA--KILDFGLAKLPNEDF--VI 150
           + A  + + +  LH      I+HCD+KP+NIL+ +   +  K++DFG +   ++     I
Sbjct: 204 KFAHSILQCLDALHKNR---IIHCDLKPENILLKQQGRSGIKVIDFGSSCYEHQRVYTYI 260

Query: 151 DKRDKGYMAPECYKRTPISVKADVYGYGIVLLE 183
             R   Y APE        +  D++  G +L E
Sbjct: 261 QSRF--YRAPEVILGARYGMPIDMWSLGCILAE 291

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 6/85 (7%)

Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGY 157
           +   + YL  +    I+H DIK +NI++ E +T K++DFG A       +         Y
Sbjct: 139 LVSAVGYLRLKD---IIHRDIKDENIVIAEDFTIKLIDFGSAAYLERGKLFYTFCGTIEY 195

Query: 158 MAPECYKRTP-ISVKADVYGYGIVL 181
            APE     P    + +++  G+ L
Sbjct: 196 CAPEVLMGNPYRGPELEMWSLGVTL 220

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 6/51 (11%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMD-EFWTAKILDFGLAK--LPNEDFV 149
           + + Y+H      I H DIKPQN+L+D +    K+ DFG AK  +  E  V
Sbjct: 167 RSLAYIHSFG---ICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNV 214

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 7/46 (15%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTA----KILDFGLAKL 143
            GI YLH      +LH D+KP NIL+          KI D G A+L
Sbjct: 139 DGIHYLHANW---VLHRDLKPANILVMGEGPERGRVKIADMGFARL 181

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 48.8 bits (117), Expect = 4e-07
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 17/91 (18%)

Query: 100 VAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKILDFGLAKL--PNEDFVIDKRD 154
           +   + Y H +    ++H D+KP+NIL          KI+DFGLA+L   +E       +
Sbjct: 133 MMNALAYFHSQ---HVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEHS----TN 185

Query: 155 K----GYMAPECYKRTPISVKADVYGYGIVL 181
                 YMAPE +KR  ++ K D++  G+V+
Sbjct: 186 AAGTALYMAPEVFKR-DVTFKCDIWSAGVVM 215

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 48.7 bits (117), Expect = 5e-07
 Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 9/92 (9%)

Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKILDFGLAKLPNEDFVID 151
           RI  DV   + Y H      + H D+KP+N L          K++DFGLA       ++ 
Sbjct: 110 RIMKDVLSAVAYCHKL---NVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKMMR 166

Query: 152 KR--DKGYMAPECYKRTPISVKADVYGYGIVL 181
            +     Y++P+  +      + D +  G+++
Sbjct: 167 TKVGTPYYVSPQVLEG-LYGPECDEWSAGVMM 197

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 48.4 bits (116), Expect = 5e-07
 Identities = 18/103 (17%), Positives = 45/103 (43%), Gaps = 13/103 (12%)

Query: 92  QRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT--------AKILDFGLAKL 143
            ++ +A  +A  + +L +     ++H ++  +NIL+              K+ D G++  
Sbjct: 114 WKLEVAKQLAAAMHFLEENT---LIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISIT 170

Query: 144 PNEDFVIDKRDKGYMAPECYK-RTPISVKADVYGYGIVLLETI 185
                ++ +R   ++ PEC +    +++  D + +G  L E  
Sbjct: 171 VLPKDILQERIP-WVPPECIENPKNLNLATDKWSFGTTLWEIC 212

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 48.4 bits (116), Expect = 6e-07
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 8/83 (9%)

Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG---YMA 159
            + Y H +    I+H D+K +N+L+D     KI DFG +        +     G   Y A
Sbjct: 126 AVQYCHQKR---IVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGKL-DAFCGAPPYAA 181

Query: 160 PECYKRTP-ISVKADVYGYGIVL 181
           PE ++       + DV+  G++L
Sbjct: 182 PELFQGKKYDGPEVDVWSLGVIL 204

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 48.5 bits (116), Expect = 7e-07
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 11/98 (11%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW---TAKILDFGLAKLPNEDFVI 150
           + +A D+A G  YL +      +H DI  +N L+        AKI DFG+A+        
Sbjct: 184 LHVARDIACGCQYLEENH---FIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYY 240

Query: 151 DKRDKGY-----MAPECYKRTPISVKADVYGYGIVLLE 183
            K          M PE +     + K D + +G++L E
Sbjct: 241 RKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWE 278

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 48.4 bits (116), Expect = 7e-07
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 8/97 (8%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR 153
           V +   +A G+ YL       ++H D+  +N+L+ +    KI D GL +           
Sbjct: 131 VHLVAQIAAGMEYLSSH---HVVHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYKLL 187

Query: 154 DKG-----YMAPECYKRTPISVKADVYGYGIVLLETI 185
                   +MAPE       S+ +D++ YG+VL E  
Sbjct: 188 GNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVF 224

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 48.6 bits (116), Expect = 7e-07
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 6/51 (11%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMD-EFWTAKILDFGLAK--LPNEDFV 149
           + + ++H      I H DIKPQN+L++ +  T K+ DFG AK  +P+E  V
Sbjct: 152 RAVGFIHSL---GICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEPSV 199

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 48.7 bits (116), Expect = 8e-07
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 3/40 (7%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA 141
            G+ Y+H      ILH D+KP N L+++  + K+ DFGLA
Sbjct: 167 VGVKYVH---SAGILHRDLKPANCLVNQDCSVKVCDFGLA 203

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score = 48.1 bits (115), Expect = 9e-07
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 15/87 (17%)

Query: 106 YLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK---G---YMA 159
           YLH      +++ D+KP+N+L+D+    ++ DFG AK       +  R     G    +A
Sbjct: 156 YLHSLD---LIYRDLKPENLLIDQQGYIQVTDFGFAK------RVKGRTWTLCGTPEALA 206

Query: 160 PECYKRTPISVKADVYGYGIVLLETIC 186
           PE       +   D +  G+++ E   
Sbjct: 207 PEIILSKGYNKAVDWWALGVLIYEMAA 233

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 8/95 (8%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR 153
           + IA  VA G+ YL +      +H D+  +N L+ E    KI DFGL++           
Sbjct: 177 LCIARQVAAGMAYLSERK---FVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKAD 233

Query: 154 DKGY-----MAPECYKRTPISVKADVYGYGIVLLE 183
                    M PE       + ++DV+ YG+VL E
Sbjct: 234 GNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWE 268

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 33/90 (36%), Positives = 43/90 (47%), Gaps = 19/90 (21%)

Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG------ 156
           G++YLH      I H DIKP+N+L+DE    KI DFGLA +           +       
Sbjct: 117 GVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFR-----YNNRERLLNKMC 168

Query: 157 ----YMAPECYKRTP-ISVKADVYGYGIVL 181
               Y+APE  KR    +   DV+  GIVL
Sbjct: 169 GTLPYVAPELLKRREFHAEPVDVWSCGIVL 198

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED 147
            G+  LH+     ++H D+ P NIL+ +     I DF LA+    D
Sbjct: 145 LGLHVLHEAG---VVHRDLHPGNILLADNNDITICDFNLAREDTAD 187

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 9/66 (13%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYM--- 158
           +G+ Y+H      +LH D+KP N+L++     KI DFGLA++ + D         Y+   
Sbjct: 139 RGLKYIHSAN---VLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATR 195

Query: 159 ---APE 161
              APE
Sbjct: 196 WYRAPE 201

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 12/87 (13%)

Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK------G 156
           G+ YLH +    I+H DIKP N+L+    T KI   G+A+     F  D   +       
Sbjct: 121 GLEYLHSQG---IVHKDIKPGNLLLTTGGTLKISALGVAEAL-HPFAADDTCRTSQGSPA 176

Query: 157 YMAPECY--KRTPISVKADVYGYGIVL 181
           +  PE      T    K D++  G+ L
Sbjct: 177 FQPPEIANGLDTFSGFKVDIWSAGVTL 203

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 24/101 (23%), Positives = 33/101 (32%), Gaps = 26/101 (25%)

Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED-------FVIDKRDK 155
            I  +H       +H DIKP NIL+D     ++ DFG       D        V      
Sbjct: 174 AIDSVHRLG---YVHRDIKPDNILLDRCGHIRLADFGSCLKLRADGTVRSLVAV------ 224

Query: 156 G---YMAPECYKRTPISVKADVYG-------YGIVLLETIC 186
           G   Y++PE  +          YG        G+   E   
Sbjct: 225 GTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFY 265

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 3/46 (6%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED 147
           KG+ Y+H      ++H D+KP N+ ++E    KILDFGLA+  + +
Sbjct: 137 KGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGLARHADAE 179

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 16/73 (21%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG----- 156
           + +  LH      ++H D+KP N+L++     K+ DFGLA++ +E    +    G     
Sbjct: 123 RAVKVLHGSN---VIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGM 179

Query: 157 --------YMAPE 161
                   Y APE
Sbjct: 180 VEFVATRWYRAPE 192

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF 148
            GI +LH      I+H D+KP NI++    T KILDFGLA+     F
Sbjct: 175 CGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF 218

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 17/96 (17%)

Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG------ 156
            + +LH      I++ DIK +NIL+D      + DFGL+K    +FV D+ ++       
Sbjct: 171 ALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGLSK----EFVADETERAYDFCGT 223

Query: 157 --YMAPE--CYKRTPISVKADVYGYGIVLLETICCR 188
             YMAP+      +      D +  G+++ E +   
Sbjct: 224 IEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGA 259

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 33/90 (36%), Positives = 43/90 (47%), Gaps = 19/90 (21%)

Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG------ 156
           G++YLH      I H DIKP+N+L+DE    KI DFGLA +           +       
Sbjct: 117 GVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFR-----YNNRERLLNKMC 168

Query: 157 ----YMAPECYKRTP-ISVKADVYGYGIVL 181
               Y+APE  KR    +   DV+  GIVL
Sbjct: 169 GTLPYVAPELLKRREFHAEPVDVWSCGIVL 198

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 22/98 (22%)

Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED-------FV--IDKR 153
            I  +H       +H DIKP NILMD     ++ DFG      ED        V   D  
Sbjct: 187 AIDSVHQLH---YVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPD-- 241

Query: 154 DKGYMAPECYKRTPISVK-----ADVYGYGIVLLETIC 186
              Y++PE  +             D +  G+ + E + 
Sbjct: 242 ---YISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLY 276

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF 148
            GI +LH      I+H D+KP NI++    T KILDFGLA+     F
Sbjct: 138 CGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF 181

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 3/46 (6%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED 147
           KG+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  + +
Sbjct: 139 KGLRYIHAAG---IIHRDLKPGNLAVNEDCELKILDFGLARQADSE 181

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 3/40 (7%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA 141
            G  ++H   E  I+H D+KP N L+++  + K+ DFGLA
Sbjct: 140 LGENFIH---ESGIIHRDLKPANCLLNQDCSVKVCDFGLA 176

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA 141
           K I YLH      +LH D+KP NIL++     K+ DFGL+
Sbjct: 120 KVIKYLHSGG---LLHRDMKPSNILLNAECHVKVADFGLS 156

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score = 46.0 bits (110), Expect = 4e-06
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 15/87 (17%)

Query: 106 YLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK---G---YMA 159
           YLH +    I++ D+KP+NIL+D+    KI DFG AK       +        G   Y+A
Sbjct: 121 YLHSK---DIIYRDLKPENILLDKNGHIKITDFGFAK------YVPDVTYTLCGTPDYIA 171

Query: 160 PECYKRTPISVKADVYGYGIVLLETIC 186
           PE     P +   D + +GI++ E + 
Sbjct: 172 PEVVSTKPYNKSIDWWSFGILIYEMLA 198

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)

Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED 147
            I Y H      I+H D+KP+N+L+D+    KI DFGL+ +  + 
Sbjct: 120 AIEYCHRHK---IVHRDLKPENLLLDDNLNVKIADFGLSNIMTDG 161

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 3/40 (7%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA 141
           +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA
Sbjct: 143 RGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGLA 179

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 6/82 (7%)

Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR--DKGYMAP 160
            + Y H      ++H D+KP+N+L+D    AKI DFGL+ + ++   +        Y AP
Sbjct: 123 AVDYCHRHM---VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAP 179

Query: 161 ECYKRTP-ISVKADVYGYGIVL 181
           E          + D++  G++L
Sbjct: 180 EVISGRLYAGPEVDIWSCGVIL 201

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 45.8 bits (109), Expect = 6e-06
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 18/91 (19%)

Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMD-EFWTAKILDFGLAKLPN----EDFVIDKRD 154
           V + + + H+     +LH DIK +NIL+D      K++DFG   L       DF      
Sbjct: 158 VLEAVRHCHNCG---VLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFD----- 209

Query: 155 KG---YMAPECYKRTP-ISVKADVYGYGIVL 181
            G   Y  PE  +        A V+  GI+L
Sbjct: 210 -GTRVYSPPEWIRYHRYHGRSAAVWSLGILL 239

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 45.9 bits (109), Expect = 6e-06
 Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 3/45 (6%)

Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED 147
           G+ Y H      ++H D+KP+N+L+D    AKI DFGL+ + ++ 
Sbjct: 128 GVDYCHRHM---VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG 169

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 23/113 (20%)

Query: 92  QRVRIALDVAK--------GILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKL 143
               +    A+         +  +H       +H D+KP N+L+D+    K+ DFG    
Sbjct: 161 SNYDVPEKWARFYTAEVVLALDAIHSMG---FIHRDVKPDNMLLDKSGHLKLADFGTCMK 217

Query: 144 PNEDFVIDKR------DKGYMAPECYKRTPISVK----ADVYGYGIVLLETIC 186
            N++ ++         D  Y++PE  K            D +  G+ L E + 
Sbjct: 218 MNKEGMVRCDTAVGTPD--YISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLV 268

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 18/91 (19%)

Query: 100 VAKGILYLHDECEPPILHCDIKPQNILMD-EFWTAKILDFGLAKLPN----EDFVIDKRD 154
           V   I + H      ++H DIK +NIL+D     AK++DFG   L +     DF      
Sbjct: 148 VVAAIQHCHSRG---VVHRDIKDENILIDLRRGCAKLIDFGSGALLHDEPYTDFD----- 199

Query: 155 KG---YMAPECYKRTP-ISVKADVYGYGIVL 181
            G   Y  PE   R    ++ A V+  GI+L
Sbjct: 200 -GTRVYSPPEWISRHQYHALPATVWSLGILL 229

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 10/67 (14%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMD-EFWTAKILDFGLAKLPNEDFVIDKRDKGYM-- 158
           +G+ Y+H      +LH D+KP N+ ++ E    KI DFGLA++ +  +         +  
Sbjct: 131 RGLKYIHSA---NVLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVT 187

Query: 159 ----APE 161
               +P 
Sbjct: 188 KWYRSPR 194

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A* Length = 330

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 8/54 (14%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAK-----ILDFGLAK 142
           + IA+ +   + Y+H +    +++ D+KP+N L+            I+DF LAK
Sbjct: 108 LMIAIQLISRMEYVHSKN---LIYRDVKPENFLIGRPGNKTQQVIHIIDFALAK 158

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* Length = 382

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 7/93 (7%)

Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA--KILDFGLAKLPNED--FVI 150
           + A  +   +L+L    E  I+HCD+KP+NIL+     +  KI+DFG +    +     I
Sbjct: 161 KFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQLGQRIYQYI 219

Query: 151 DKRDKGYMAPECYKRTPISVKADVYGYGIVLLE 183
             R   Y +PE     P  +  D++  G +L+E
Sbjct: 220 QSRF--YRSPEVLLGMPYDLAIDMWSLGCILVE 250

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* Length = 397

 Score = 43.4 bits (102), Expect = 4e-05
 Identities = 32/166 (19%), Positives = 50/166 (30%), Gaps = 67/166 (40%)

Query: 75  SLTDIIFCSAERNPYWNQRVRIALDVAKGIL--------YLHDECEPPILHCDIKPQNIL 126
            L   I     ++ Y      + L   K I+        YLH +C   I+H DIKP+NIL
Sbjct: 130 HLLKWI----IKSNY----QGLPLPCVKKIIQQVLQGLDYLHTKCR--IIHTDIKPENIL 179

Query: 127 M-------------------------------------------------DEFWTAKILD 137
           +                                                  E    KI D
Sbjct: 180 LSVNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIAD 239

Query: 138 FGLAKLPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLE 183
            G A   ++ F  D + + Y + E    +  +  AD++    +  E
Sbjct: 240 LGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFE 285

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 10/85 (11%)

Query: 103 GILYLHDECEPPILHCDIKPQNILMDEFWTA--KILDFGLAKLPNEDFVIDKRDKG---Y 157
           G+ Y H      I H D+K +N L+D       KI DFG +K             G   Y
Sbjct: 128 GVSYCHSMQ---ICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTV-GTPAY 183

Query: 158 MAPECYKRTP-ISVKADVYGYGIVL 181
           +APE   R       ADV+  G+ L
Sbjct: 184 IAPEVLLRQEYDGKIADVWSCGVTL 208

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 4/41 (9%)

Query: 102 KGILYLHDECEPPILHCDIKPQNILMD-EFWTAKILDFGLA 141
           K + Y H      I+H D+KP N+++D E    +++D+GLA
Sbjct: 141 KALDYCHSMG---IMHRDVKPHNVMIDHEHRKLRLIDWGLA 178

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A* Length = 298

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 8/54 (14%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAK-----ILDFGLAK 142
              A  +   +  +H++    +++ DIKP N L+    +       ++DFG+ K
Sbjct: 109 AMAAKQMLARVQSIHEKS---LVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVK 159

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 6/51 (11%)

Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKILDFGLAK 142
            I   + + I YLH      I H D+KP+N+L          K+ DFG AK
Sbjct: 121 EIMKSIGEAIQYLHSIN---IAHRDVKPENLLYTSKRPNAILKLTDFGFAK 168

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens} Length = 352

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 9/50 (18%), Positives = 24/50 (48%), Gaps = 5/50 (10%)

Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKI--LDFGLAK 142
           ++A  +   + +LH+      +H ++  +NI +D    +++    +G A 
Sbjct: 163 QVACRLLDALEFLHENE---YVHGNVTAENIFVDPEDQSQVTLAGYGFAF 209

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} Length = 345

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 11/50 (22%), Positives = 25/50 (50%), Gaps = 5/50 (10%)

Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKI--LDFGLAK 142
           ++ + +   + Y+H+      +H DIK  N+L+      ++   D+GL+ 
Sbjct: 155 QLGIRMLDVLEYIHENE---YVHGDIKAANLLLGYKNPDQVYLADYGLSY 201

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A Length = 296

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAK---ILDFGLAK 142
           + +A  +   I Y+H +     +H D+KP N LM          I+DFGLAK
Sbjct: 108 LLLADQMISRIEYIHSKN---FIHRDVKPDNFLMGLGKKGNLVYIIDFGLAK 156

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} Length = 483

 Score = 40.0 bits (93), Expect = 4e-04
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 6/52 (11%)

Query: 94  VRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAK---ILDFGLAK 142
           + +A  +   + ++H +     LH DIKP N LM     A    I+DFGLAK
Sbjct: 106 LMLADQMINRVEFVHSKS---FLHRDIKPDNFLMGLGRRANQVYIIDFGLAK 154

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A Length = 364

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 5/39 (12%)

Query: 106 YLHDECEPPILHCDIKPQNILMDEFWTAKI--LDFGLAK 142
           Y+H+      +H DIK  N+L++     ++  +D+GLA 
Sbjct: 167 YIHEHE---YVHGDIKASNLLLNYKNPDQVYLVDYGLAY 202

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	257
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	100.0
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	100.0
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	100.0
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	100.0
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
3q4u_A	301	Activin receptor type-1; structural genomics conso	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	100.0
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	100.0
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	100.0
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	100.0
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	100.0
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	100.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	100.0
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	100.0
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	100.0
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	100.0
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
3soc_A	322	Activin receptor type-2A; structural genomics cons	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	100.0
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	100.0
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	100.0
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	100.0
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	100.0
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	100.0
2a19_B	284	Interferon-induced, double-stranded RNA-activated	100.0
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	100.0
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	100.0
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	100.0
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	100.0
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	100.0
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	100.0
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	100.0
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	100.0
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	100.0
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	100.0
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	100.0
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	100.0
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	100.0
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	100.0
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	100.0
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	100.0
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	100.0
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	100.0
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	100.0
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	100.0
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	100.0
3ork_A	311	Serine/threonine protein kinase; structural genomi	100.0
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	100.0
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	100.0
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	100.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	100.0
3pls_A	298	Macrophage-stimulating protein receptor; protein k	100.0
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	100.0
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	100.0
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	100.0
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	100.0
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	100.0
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	100.0
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	100.0
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	100.0
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	100.0
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	100.0
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	100.0
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	100.0
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	100.0
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	100.0
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	100.0
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	100.0
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	100.0
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	100.0
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	100.0
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	100.0
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	100.0
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	100.0
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	100.0
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	100.0
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	100.0
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	100.0
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	100.0
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	100.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	100.0
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	100.0
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	100.0
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	100.0
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	100.0
3bhy_A	283	Death-associated protein kinase 3; death associate	100.0
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	100.0
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	100.0
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	100.0
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	100.0
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	100.0
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	100.0
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	100.0
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	100.0
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	100.0
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	100.0
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	100.0
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	100.0
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	100.0
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	100.0
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	100.0
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	100.0
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	100.0
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	100.0
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	100.0
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	100.0
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	100.0
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	100.0
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	100.0
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	100.0
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	100.0
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	100.0
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	100.0
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	100.0
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	100.0
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	100.0
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	100.0
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	100.0
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	100.0
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	100.0
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	100.0
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	100.0
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	100.0
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	100.0
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	100.0
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	100.0
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	100.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	100.0
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	100.0
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	100.0
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	100.0
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	100.0
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	100.0
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	100.0
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	100.0
3fme_A	290	Dual specificity mitogen-activated protein kinase;	100.0
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	100.0
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	100.0
3an0_A	340	Dual specificity mitogen-activated protein kinase;	100.0
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	100.0
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	100.0
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	100.0
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	100.0
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	100.0
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	100.0
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	100.0
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	100.0
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	100.0
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	100.0
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	100.0
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	100.0
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	100.0
2dyl_A	318	Dual specificity mitogen-activated protein kinase	100.0
3aln_A	327	Dual specificity mitogen-activated protein kinase;	100.0
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	100.0
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	100.0
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	100.0
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	100.0
3uqc_A	286	Probable conserved transmembrane protein; structur	99.97
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.97
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.94
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.88
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.78
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.62
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.39
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	98.88
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	98.75
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	98.5
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.31
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	97.9
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	97.69
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	97.3
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.28
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	97.21
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	96.82
3ats_A	357	Putative uncharacterized protein; hypothetical pro	96.68
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	95.88
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	95.66
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	95.58
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	95.44
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	94.51
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	92.44
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	92.07
4ann_A	215	ESSB; membrane protein, membrane secretion, ESS ty	88.97
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	87.96
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	86.39
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	82.38
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	81.07
4ano_A	219	ESSB; membrane protein, membrane secretion, ESS ty	80.89
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	80.45

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=2.5e-51  Score=348.15  Aligned_cols=228  Identities=17%  Similarity=0.220  Sum_probs=186.3

Q ss_pred             ccccceeeeccc------CCCCCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEE
Q 044568            4 TKLSNFYRSSFN------ARNSPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~~------~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV   67 (257)
                      +.|+.||+|++.      ++..++||.+.          |.+|++++.         +++|+|||++.+++...+..+||
T Consensus        37 G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~---------~l~HpNIV~l~g~~~~~~~~~lV  107 (308)
T 4gt4_A           37 DRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRA---------RLQHPNVVCLLGVVTKDQPLSMI  107 (308)
T ss_dssp             CSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHH---------HCCCTTBCCEEEEECSSSSCEEE
T ss_pred             CCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHH---------hCCCCCCCCcceEEEECCEEEEE
Confidence            579999999873      44567887653          556666666         88999999999999999999999


Q ss_pred             EeecCCCCHHHHHhccC--------------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCce
Q 044568           68 ERPVRNGSLTDIIFCSA--------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA  133 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~--------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~  133 (257)
                      ||||++|||.++|....              ...+++.++..++.|++.||.|||++   +|+||||||+|||+++++.+
T Consensus       108 ~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLK~~NILl~~~~~~  184 (308)
T 4gt4_A          108 FSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHKDLATRNVLVYDKLNV  184 (308)
T ss_dssp             EECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCE
T ss_pred             EEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCccccceEECCCCCE
Confidence            99999999999996421              24689999999999999999999999   99999999999999999999


Q ss_pred             EEeeecccccCCCC-----cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHH
Q 044568          134 KILDFGLAKLPNED-----FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWV  207 (257)
Q Consensus       134 kl~dfg~~~~~~~~-----~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~  207 (257)
                      ||+|||+++.....     .....||+.|+|||++.+..|+.++|||||||++|||+| |..||.....  .  .+... 
T Consensus       185 Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~--~--~~~~~-  259 (308)
T 4gt4_A          185 KISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSN--Q--DVVEM-  259 (308)
T ss_dssp             EECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCH--H--HHHHH-
T ss_pred             EECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCH--H--HHHHH-
Confidence            99999998753221     234567889999999999999999999999999999998 8999975421  1  11110 


Q ss_pred             HHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          208 YKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                         ....      ...+.+.+++..+.+++.+||+.||++|| |+||++.|
T Consensus       260 ---i~~~------~~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L  301 (308)
T 4gt4_A          260 ---IRNR------QVLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRL  301 (308)
T ss_dssp             ---HHTT------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             ---HHcC------CCCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence               0000      01134566788899999999999999999 99998865

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-50  Score=343.24  Aligned_cols=227  Identities=23%  Similarity=0.297  Sum_probs=179.3

Q ss_pred             ccccceeeecccCCCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +.|+.||+|++..  .++||.+.           |.+|++.+.         +++|+|||++.+++. .+..+||||||+
T Consensus        47 G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~---------~l~HpNIV~l~g~~~-~~~~~iVmEy~~  114 (307)
T 3omv_A           47 GSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLR---------KTRHVNILLFMGYMT-KDNLAIVTQWCE  114 (307)
T ss_dssp             CSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHT---------TCCCTTBCCEEEEEC-SSSCEEEEECCS
T ss_pred             CCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHH---------hCCCCCEeeEEEEEE-CCeEEEEEEcCC
Confidence            6799999999764  47777643           345555555         899999999999875 467899999999


Q ss_pred             CCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC-----
Q 044568           73 NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED-----  147 (257)
Q Consensus        73 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~-----  147 (257)
                      +|||.++|.. ....+++.++..++.|++.||.|||++   +|+||||||+|||++.++.+||+|||+++.....     
T Consensus       115 gGsL~~~l~~-~~~~l~~~~~~~i~~qia~gL~yLH~~---~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~  190 (307)
T 3omv_A          115 GSSLYKHLHV-QETKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQ  190 (307)
T ss_dssp             SCBHHHHHHT-SCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCSSSEEEETTEEEEECCCSSCBC---------
T ss_pred             CCCHHHHHhh-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCccCHHHEEECCCCcEEEeeccCceecccCCccee
Confidence            9999999975 556799999999999999999999999   9999999999999999999999999999754321     


Q ss_pred             cccccCCCCccCcccccC---CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcC--
Q 044568          148 FVIDKRDKGYMAPECYKR---TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRG--  222 (257)
Q Consensus       148 ~~~~~~~~~~~aPE~~~~---~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  222 (257)
                      .....||+.|+|||++..   .+|+.++|||||||++|||+||+.||.......   .+......        ....+  
T Consensus       191 ~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~---~~~~~~~~--------~~~~p~~  259 (307)
T 3omv_A          191 VEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRD---QIIFMVGR--------GYASPDL  259 (307)
T ss_dssp             ---CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHH---HHHHHHHT--------TCCCCCS
T ss_pred             ecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHH---HHHHHHhc--------CCCCCCc
Confidence            244579999999999863   468999999999999999999999997542211   11111100        11111  


Q ss_pred             CCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          223 TKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       223 ~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ...+.++++.+.+++.+||+.||++|| |+||++.|
T Consensus       260 ~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~L  295 (307)
T 3omv_A          260 SKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSI  295 (307)
T ss_dssp             TTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHH
T ss_pred             ccccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHH
Confidence            134556678899999999999999999 99998753

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=5.7e-51  Score=344.62  Aligned_cols=228  Identities=17%  Similarity=0.226  Sum_probs=184.1

Q ss_pred             ccccceeeeccc------CCCCCeeeccc---------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEE
Q 044568            4 TKLSNFYRSSFN------ARNSPWISRVS---------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIE   68 (257)
Q Consensus         4 ~~~~~~y~~~~~------~~~~~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~   68 (257)
                      +.|+.||+|++.      ++..++||.+.         |.+|++.+.         +++|+|||++.+++...+..+|||
T Consensus        24 G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~---------~l~HpnIV~l~g~~~~~~~~~lV~   94 (299)
T 4asz_A           24 GAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLT---------NLQHEHIVKFYGVCVEGDPLIMVF   94 (299)
T ss_dssp             --CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHT---------TCCCTTBCCEEEEECSSSSEEEEE
T ss_pred             CCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHH---------hCCCCCCccEEEEEeeCCEEEEEE
Confidence            579999999864      34557887654         455666655         899999999999999999999999


Q ss_pred             eecCCCCHHHHHhcc-----------CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEee
Q 044568           69 RPVRNGSLTDIIFCS-----------AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILD  137 (257)
Q Consensus        69 E~~~~gsL~~~l~~~-----------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d  137 (257)
                      |||++|||.++|+..           ....+++.++..++.|++.||.|||++   +|+||||||+|||++.++.+||+|
T Consensus        95 Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDlKp~NILl~~~~~~Ki~D  171 (299)
T 4asz_A           95 EYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENLLVKIGD  171 (299)
T ss_dssp             ECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECC
T ss_pred             EcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCccCHhhEEECCCCcEEECC
Confidence            999999999999752           245799999999999999999999999   999999999999999999999999


Q ss_pred             ecccccCCCCc-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhh
Q 044568          138 FGLAKLPNEDF-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCF  211 (257)
Q Consensus       138 fg~~~~~~~~~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~  211 (257)
                      ||+++......     ....+|+.|+|||.+.+..|+.++|||||||++|||+| |+.||.....   .......     
T Consensus       172 FGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~---~~~~~~i-----  243 (299)
T 4asz_A          172 FGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSN---NEVIECI-----  243 (299)
T ss_dssp             CSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH---HHHHHHH-----
T ss_pred             cccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCH---HHHHHHH-----
Confidence            99997533222     23357889999999999999999999999999999998 8999975421   1111100     


Q ss_pred             hhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          212 INRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ...      .....+..+++.+.+++.+||+.||++|| ++||++.|
T Consensus       244 ~~~------~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L  284 (299)
T 4asz_A          244 TQG------RVLQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLL  284 (299)
T ss_dssp             HHT------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             HcC------CCCCCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence            000      01134556778899999999999999999 99998764

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=2.5e-50  Score=345.01  Aligned_cols=228  Identities=17%  Similarity=0.184  Sum_probs=180.6

Q ss_pred             ccccceeeeccc------CCCCCeeeccc---------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEE
Q 044568            4 TKLSNFYRSSFN------ARNSPWISRVS---------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIE   68 (257)
Q Consensus         4 ~~~~~~y~~~~~------~~~~~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~   68 (257)
                      +.|+.||+|++.      ++..++||.+.         |.+|++++.         +++|+|||++.+++...+..+|||
T Consensus        52 G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~---------~l~HpnIV~l~g~~~~~~~~~lV~  122 (329)
T 4aoj_A           52 GAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLT---------MLQHQHIVRFFGVCTEGRPLLMVF  122 (329)
T ss_dssp             CSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHT---------TCCCTTBCCEEEEECSSSSEEEEE
T ss_pred             CCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHH---------hCCCCCCCcEEEEEEECCEEEEEE
Confidence            578999999864      35567888654         455666665         899999999999999999999999


Q ss_pred             eecCCCCHHHHHhccC-------------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEE
Q 044568           69 RPVRNGSLTDIIFCSA-------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKI  135 (257)
Q Consensus        69 E~~~~gsL~~~l~~~~-------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl  135 (257)
                      |||++|||.++++...             ...+++.+++.++.|++.||.|||++   +|+||||||+|||++.++.+||
T Consensus       123 Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLKp~NILl~~~~~~Ki  199 (329)
T 4aoj_A          123 EYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL---HFVHRDLATRNCLVGQGLVVKI  199 (329)
T ss_dssp             ECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTEEEE
T ss_pred             EcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecccccHhhEEECCCCcEEE
Confidence            9999999999997532             24699999999999999999999999   9999999999999999999999


Q ss_pred             eeecccccCCCCc-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHH
Q 044568          136 LDFGLAKLPNEDF-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYK  209 (257)
Q Consensus       136 ~dfg~~~~~~~~~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~  209 (257)
                      +|||+++......     ....+|+.|+|||++.+..++.++|||||||++|||+| |+.||.....   .......   
T Consensus       200 ~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~---~~~~~~i---  273 (329)
T 4aoj_A          200 GDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSN---TEAIDCI---  273 (329)
T ss_dssp             CCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCH---HHHHHHH---
T ss_pred             cccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCH---HHHHHHH---
Confidence            9999998543221     34568889999999999999999999999999999999 8999975421   1111100   


Q ss_pred             hhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          210 CFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                        ...      .....+..+++.+.+++.+||+.||++|| |+||++.|
T Consensus       274 --~~g------~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L  314 (329)
T 4aoj_A          274 --TQG------RELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARL  314 (329)
T ss_dssp             --HHT------CCCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHH
T ss_pred             --HcC------CCCCCcccccHHHHHHHHHHcCcChhHCcCHHHHHHHH
Confidence              000      01134556778899999999999999999 99998764

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=3e-49  Score=339.48  Aligned_cols=226  Identities=19%  Similarity=0.192  Sum_probs=183.5

Q ss_pred             ccccceeeeccc-CCCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      +.|+.||+++.. +++.+++|.+.           +.+|++.+.         ++.|+|||++.+.+...+..|||||||
T Consensus        35 G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~---------~l~HpnIV~~~~~~~~~~~~yiVmEy~  105 (350)
T 4b9d_A           35 GSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLA---------NMKHPNIVQYRESFEENGSLYIVMDYC  105 (350)
T ss_dssp             ----CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHH---------HCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHH---------HCCCCCCCcEEEEEEECCEEEEEEeCC
Confidence            578999999864 56778888754           344555555         889999999999999999999999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc---
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF---  148 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~---  148 (257)
                      +||+|.++|.......+++.+++.++.||+.||.|||++   +|+||||||+|||++.++.+||+|||+++......   
T Consensus       106 ~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~  182 (350)
T 4b9d_A          106 EGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELA  182 (350)
T ss_dssp             TTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCEETTCCGGGEEECTTCCEEECSTTEESCCCHHHHHH
T ss_pred             CCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHHHEEECCCCCEEEcccccceeecCCcccc
Confidence            999999999764566789999999999999999999999   99999999999999999999999999998765432   


Q ss_pred             ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHH
Q 044568          149 VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKK  228 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (257)
                      ....||+.|+|||++.+..|+.++||||+||++|||++|+.||......   ......     ...      .....+..
T Consensus       183 ~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~---~~~~~i-----~~~------~~~~~~~~  248 (350)
T 4b9d_A          183 RACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMK---NLVLKI-----ISG------SFPPVSLH  248 (350)
T ss_dssp             HHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHH---HHHHHH-----HHT------CCCCCCTT
T ss_pred             cccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHH---HHHHHH-----HcC------CCCCCCcc
Confidence            3457999999999999999999999999999999999999999755211   111111     000      01123444


Q ss_pred             HHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          229 NLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       229 ~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .++.+.+|+.+||+.||++|| ++|+++
T Consensus       249 ~s~~~~~li~~~L~~dP~~R~s~~e~l~  276 (350)
T 4b9d_A          249 YSYDLRSLVSQLFKRNPRDRPSVNSILE  276 (350)
T ss_dssp             SCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             CCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            567899999999999999999 999975

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=2.3e-49  Score=338.61  Aligned_cols=227  Identities=15%  Similarity=0.093  Sum_probs=184.9

Q ss_pred             ccccceeeeccc-CCCCCeeeccch----hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHH
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW----TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTD   78 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~   78 (257)
                      +.|+.||+++.. ++..+++|.+..    .+|++.+.         ++.|+|||++.+.+...+..+||||||+||+|.+
T Consensus        69 G~fG~Vy~a~~~~~g~~vAiK~i~~~~~~~~E~~il~---------~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~L~~  139 (336)
T 4g3f_A           69 GSFGEVHRMKDKQTGFQCAVKKVRLEVFRVEELVACA---------GLSSPRIVPLYGAVREGPWVNIFMELLEGGSLGQ  139 (336)
T ss_dssp             ETTEEEEEEEETTTCCEEEEEEEETTTCCTHHHHTTT---------TCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHH
T ss_pred             CCCeEEEEEEECCCCCEEEEEEECHHHhHHHHHHHHH---------hCCCCCCCcEEEEEEECCEEEEEEeccCCCcHHH
Confidence            578999999965 466788887653    45666555         8899999999999999999999999999999999


Q ss_pred             HHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCC-ceEEeeecccccCCCCc--------c
Q 044568           79 IIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW-TAKILDFGLAKLPNEDF--------V  149 (257)
Q Consensus        79 ~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~-~~kl~dfg~~~~~~~~~--------~  149 (257)
                      +|.  ....+++.++..++.|++.||.|||++   +|+||||||+|||++.++ .+||+|||+++......        .
T Consensus       140 ~l~--~~~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~~~~~~~  214 (336)
T 4g3f_A          140 LIK--QMGCLPEDRALYYLGQALEGLEYLHTR---RILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGD  214 (336)
T ss_dssp             HHH--HHSSCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCCGGGEEECTTSCCEEECCCTTCEEC------------C
T ss_pred             HHH--HcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCcccceecCC
Confidence            997  446799999999999999999999999   999999999999999887 69999999998653321        2


Q ss_pred             cccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHH
Q 044568          150 IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKN  229 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (257)
                      ...||+.|+|||++.+..|+.++|||||||++|||++|+.||.......-..   ....         ...+....+...
T Consensus       215 ~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~---~i~~---------~~~~~~~~~~~~  282 (336)
T 4g3f_A          215 YIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCL---KIAS---------EPPPIREIPPSC  282 (336)
T ss_dssp             CCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHH---HHHH---------SCCGGGGSCTTS
T ss_pred             ccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHH---HHHc---------CCCCchhcCccC
Confidence            3468999999999999999999999999999999999999997653322111   1100         000001234456


Q ss_pred             HHHHHHHHHHcccCCCCCCC-hHHHHHh
Q 044568          230 LENLVKVGLWCVQDEPALRP-MKCAVMM  256 (257)
Q Consensus       230 ~~~l~~l~~~cl~~~p~~RP-~~ei~~~  256 (257)
                      ++.+.+++.+||+.||.+|| +.|+++.
T Consensus       283 s~~~~~li~~~L~~dP~~R~sa~el~~~  310 (336)
T 4g3f_A          283 APLTAQAIQEGLRKEPVHRASAMELRRK  310 (336)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CHHHHHHHHHHccCCHhHCcCHHHHHHH
Confidence            67899999999999999999 9999764

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=8.1e-49  Score=336.26  Aligned_cols=224  Identities=16%  Similarity=0.150  Sum_probs=185.7

Q ss_pred             ccccceeeeccc-CCCCCeeeccc---------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCC
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS---------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRN   73 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~   73 (257)
                      +.|+.||+++.. +++.+|||.+.         +.+|++++.         ++.|+|||++.+.+...+..|||||||+|
T Consensus        85 G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~---------~l~HpnIV~l~~~~~~~~~~~ivmEy~~g  155 (346)
T 4fih_A           85 GSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMR---------DYQHENVVEMYNSYLVGDELWVVMEFLEG  155 (346)
T ss_dssp             CSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHH---------HCCCTTBCCEEEEEEETTEEEEEECCCTT
T ss_pred             CcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHH---------hCCCCCCCcEEEEEEECCEEEEEEeCCCC
Confidence            579999999965 56678888764         345666666         88999999999999999999999999999


Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---ccc
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---FVI  150 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~~~  150 (257)
                      |+|.+++..   ..+++.++..++.|++.||.|||++   +|+||||||+|||++.++.+||+|||+++.....   ...
T Consensus       156 g~L~~~l~~---~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~  229 (346)
T 4fih_A          156 GALTDIVTH---TRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKS  229 (346)
T ss_dssp             EEHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBCC
T ss_pred             CcHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEECCCCCEEEecCcCceecCCCCCcccc
Confidence            999999964   4699999999999999999999999   9999999999999999999999999999865432   345


Q ss_pred             ccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcC-CCCCHHH
Q 044568          151 DKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRG-TKVDKKN  229 (257)
Q Consensus       151 ~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  229 (257)
                      ..||+.|+|||++.+..|+.++||||+||++|||++|+.||.....   ...+...          ..-..+ .......
T Consensus       230 ~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~---~~~~~~i----------~~~~~~~~~~~~~~  296 (346)
T 4fih_A          230 LVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP---LKAMKMI----------RDNLPPRLKNLHKV  296 (346)
T ss_dssp             CCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH---HHHHHHH----------HHSSCCCCSCGGGS
T ss_pred             cccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH---HHHHHHH----------HcCCCCCCCccccC
Confidence            6899999999999999999999999999999999999999975421   1111111          111111 1233445


Q ss_pred             HHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          230 LENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       230 ~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .+.+.+|+.+||+.||++|| ++|+++
T Consensus       297 s~~~~dli~~~L~~dP~~R~ta~e~l~  323 (346)
T 4fih_A          297 SPSLKGFLDRLLVRDPAQRATAAELLK  323 (346)
T ss_dssp             CHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             CHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            67899999999999999999 999975

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=1.3e-48  Score=328.30  Aligned_cols=225  Identities=17%  Similarity=0.209  Sum_probs=177.6

Q ss_pred             ccccceeeecccC-CCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeee----cCceeEE
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL----TSVSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~----~~~~~lV   67 (257)
                      +.|+.||+|.... +..+++|.+.           |.+|++.+.         ++.|||||++.+.+..    .+..+||
T Consensus        37 G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~---------~l~HpnIV~~~~~~~~~~~~~~~~~lv  107 (290)
T 3fpq_A           37 GSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLK---------GLQHPNIVRFYDSWESTVKGKKCIVLV  107 (290)
T ss_dssp             CSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHH---------TCCCTTBCCEEEEEEEEETTEEEEEEE
T ss_pred             CcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHH---------hCCCCCCCcEEEEEeeccCCCcEEEEE
Confidence            5789999998654 5567777643           345555555         8899999999998865    3567999


Q ss_pred             EeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCC--eeeccCCCCceeeCC-CCceEEeeecccccC
Q 044568           68 ERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPP--ILHCDIKPQNILMDE-FWTAKILDFGLAKLP  144 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~--i~h~dl~~~nil~~~-~~~~kl~dfg~~~~~  144 (257)
                      ||||++|+|.+++.  ....+++.++..++.|++.||.|||++   +  |+||||||+|||++. ++.+||+|||+++..
T Consensus       108 mEy~~gg~L~~~l~--~~~~l~~~~~~~~~~qi~~aL~ylH~~---~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~  182 (290)
T 3fpq_A          108 TELMTSGTLKTYLK--RFKVMKIKVLRSWCRQILKGLQFLHTR---TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLK  182 (290)
T ss_dssp             EECCCSCBHHHHHH--HHSSCCHHHHHHHHHHHHHHHHHHHTS---SSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGC
T ss_pred             EeCCCCCCHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHC---CCCEEecccChhheeEECCCCCEEEEeCcCCEeC
Confidence            99999999999997  456799999999999999999999999   7  999999999999974 789999999999864


Q ss_pred             CC-CcccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC
Q 044568          145 NE-DFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  223 (257)
Q Consensus       145 ~~-~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (257)
                      .. ......||+.|+|||++.+ .|+.++|||||||++|||+||+.||.......   .+...         +.....+.
T Consensus       183 ~~~~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~---~~~~~---------i~~~~~~~  249 (290)
T 3fpq_A          183 RASFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAA---QIYRR---------VTSGVKPA  249 (290)
T ss_dssp             CTTSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHH---HHHHH---------HTTTCCCG
T ss_pred             CCCccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCCcHH---HHHHH---------HHcCCCCC
Confidence            43 3355689999999998865 69999999999999999999999996442111   11100         00111111


Q ss_pred             CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          224 KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       224 ~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ..+...++++.+++.+||+.||++|| ++|+++
T Consensus       250 ~~~~~~~~~~~~li~~~L~~dP~~R~s~~e~l~  282 (290)
T 3fpq_A          250 SFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN  282 (290)
T ss_dssp             GGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CCCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            22233446789999999999999999 999985

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=1.9e-48  Score=329.44  Aligned_cols=221  Identities=17%  Similarity=0.158  Sum_probs=182.3

Q ss_pred             ccccceeeeccc-CCCCCeeeccc------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.|+.||+++.. +++.+++|.++            +.+|++++.         ++.|+||+++...+.+.+..+|||||
T Consensus        43 G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~---------~l~HpnIv~l~~~~~~~~~~yivmEy  113 (311)
T 4aw0_A           43 GSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMS---------RLDHPFFVKLYFTFQDDEKLYFGLSY  113 (311)
T ss_dssp             ETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHT---------TCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             ccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHH---------hCCCCCCCeEEEEEEeCCEEEEEEec
Confidence            578999999964 56667888754            234444444         88999999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---  147 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---  147 (257)
                      |+||+|.++|.  ..+.+++.++..++.|++.||.|||++   +|+||||||+|||++.++.+||+|||+++.....   
T Consensus       114 ~~gG~L~~~i~--~~~~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~~  188 (311)
T 4aw0_A          114 AKNGELLKYIR--KIGSFDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ  188 (311)
T ss_dssp             CTTEEHHHHHH--HHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECCTTTTC
T ss_pred             CCCCCHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCCc
Confidence            99999999997  456799999999999999999999999   9999999999999999999999999999865322   


Q ss_pred             --cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCC
Q 044568          148 --FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKV  225 (257)
Q Consensus       148 --~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (257)
                        .....||+.|+|||++.+..|+.++||||+||++|||++|+.||....   .........     .       ....+
T Consensus       189 ~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~---~~~~~~~i~-----~-------~~~~~  253 (311)
T 4aw0_A          189 ARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGN---EGLIFAKII-----K-------LEYDF  253 (311)
T ss_dssp             CCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSS---HHHHHHHHH-----H-------TCCCC
T ss_pred             ccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC---HHHHHHHHH-----c-------CCCCC
Confidence              245589999999999999999999999999999999999999997542   111111110     0       01133


Q ss_pred             CHHHHHHHHHHHHHcccCCCCCCC-hHHH
Q 044568          226 DKKNLENLVKVGLWCVQDEPALRP-MKCA  253 (257)
Q Consensus       226 ~~~~~~~l~~l~~~cl~~~p~~RP-~~ei  253 (257)
                      +....+.+.+|+.+||+.||++|| ++|+
T Consensus       254 p~~~s~~~~dli~~lL~~dp~~R~t~~e~  282 (311)
T 4aw0_A          254 PEKFFPKARDLVEKLLVLDATKRLGCEEM  282 (311)
T ss_dssp             CTTCCHHHHHHHHHHSCSSGGGSTTSGGG
T ss_pred             CcccCHHHHHHHHHHccCCHhHCcChHHH
Confidence            445567789999999999999999 9886

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=1.1e-47  Score=336.81  Aligned_cols=224  Identities=16%  Similarity=0.151  Sum_probs=184.9

Q ss_pred             ccccceeeeccc-CCCCCeeeccc---------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCC
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS---------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRN   73 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~   73 (257)
                      +.|+.||+++.. +++.+|||.+.         +.+|++++.         ++.|+|||++.+.+...+..|||||||+|
T Consensus       162 G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~---------~l~HpnIV~l~~~~~~~~~~~iVmEy~~g  232 (423)
T 4fie_A          162 GSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMR---------DYQHENVVEMYNSYLVGDELWVVMEFLEG  232 (423)
T ss_dssp             CSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHH---------HCCCTTBCCEEEEEEETTEEEEEEECCTT
T ss_pred             CcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHH---------hCCCCCCCceEEEEEECCEEEEEEeCCCC
Confidence            578999999965 46678888754         345666666         88999999999999999999999999999


Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---ccc
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---FVI  150 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~~~  150 (257)
                      |+|.+++..   ..+++.++..++.|++.||.|||++   +|+||||||+|||++.++.+||+|||++......   ...
T Consensus       233 G~L~~~i~~---~~l~e~~~~~~~~qil~aL~ylH~~---~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~  306 (423)
T 4fie_A          233 GALTDIVTH---TRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKS  306 (423)
T ss_dssp             EEHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCCCBCC
T ss_pred             CcHHHHHhc---cCCCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEecCccceECCCCCccccc
Confidence            999999963   4699999999999999999999999   9999999999999999999999999999865432   345


Q ss_pred             ccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcC-CCCCHHH
Q 044568          151 DKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRG-TKVDKKN  229 (257)
Q Consensus       151 ~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  229 (257)
                      ..||+.|+|||++.+..|+.++|||||||++|||++|+.||.+....   ..+...          ..-..+ .......
T Consensus       307 ~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~---~~~~~i----------~~~~~~~~~~~~~~  373 (423)
T 4fie_A          307 LVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPL---KAMKMI----------RDNLPPRLKNLHKV  373 (423)
T ss_dssp             CEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH---HHHHHH----------HHSCCCCCSCTTSS
T ss_pred             cccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHH---HHHHHH----------HcCCCCCCcccccC
Confidence            68999999999999999999999999999999999999999754211   111111          111111 1223345


Q ss_pred             HHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          230 LENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       230 ~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .+.+.+|+.+||+.||++|| ++|+++
T Consensus       374 s~~~~dli~~~L~~dP~~R~ta~ell~  400 (423)
T 4fie_A          374 SPSLKGFLDRLLVRDPAQRATAAELLK  400 (423)
T ss_dssp             CHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             CHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            57889999999999999999 999975

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=2.2e-47  Score=318.48  Aligned_cols=222  Identities=18%  Similarity=0.227  Sum_probs=172.2

Q ss_pred             ccccceeeeccc-CCCCCeeeccc------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.|+.||++... +++.+++|.++            +.+|++.+.         ++.|+||+++.+.+...+..+|||||
T Consensus        24 G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~---------~l~HpnIv~~~~~~~~~~~~~ivmEy   94 (275)
T 3hyh_A           24 GSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLR---------LLRHPHIIKLYDVIKSKDEIIMVIEY   94 (275)
T ss_dssp             ---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHH---------HCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             CcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHH---------HCCCCCCCeEEEEEEECCEEEEEEeC
Confidence            578999999864 56777887643            345555555         88899999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC--c
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED--F  148 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~--~  148 (257)
                      | +|+|.+++.  ....+++.++..++.|++.||.|||++   +|+||||||+|||++.++.+||+|||+++.....  .
T Consensus        95 ~-~g~L~~~l~--~~~~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~~~  168 (275)
T 3hyh_A           95 A-GNELFDYIV--QRDKMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFL  168 (275)
T ss_dssp             C-CEEHHHHHH--HSCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTCCEEECCSSCC---------
T ss_pred             C-CCCHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCChHHeEECCCCCEEEeecCCCeecCCCCcc
Confidence            9 689999997  456799999999999999999999999   9999999999999999999999999999764432  3


Q ss_pred             ccccCCCCccCcccccCCCC-CccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCH
Q 044568          149 VIDKRDKGYMAPECYKRTPI-SVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDK  227 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~~~~-~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (257)
                      ....||+.|+|||++.+..+ +.++||||+||++|||++|+.||....   .........     .       ....++.
T Consensus       169 ~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~---~~~~~~~i~-----~-------~~~~~p~  233 (275)
T 3hyh_A          169 KTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDES---IPVLFKNIS-----N-------GVYTLPK  233 (275)
T ss_dssp             ------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSS---HHHHHHHHH-----H-------TCCCCCT
T ss_pred             CCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCC---HHHHHHHHH-----c-------CCCCCCC
Confidence            45689999999999998876 589999999999999999999997542   111111110     0       0112344


Q ss_pred             HHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          228 KNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       228 ~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ..++.+.+++.+||+.||++|| ++|+++
T Consensus       234 ~~s~~~~~li~~~L~~dP~~R~s~~eil~  262 (275)
T 3hyh_A          234 FLSPGAAGLIKRMLIVNPLNRISIHEIMQ  262 (275)
T ss_dssp             TSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             CCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence            4567789999999999999999 999975

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=3.7e-48  Score=328.60  Aligned_cols=248  Identities=21%  Similarity=0.181  Sum_probs=179.3

Q ss_pred             ccccceeeecccCCCCCeeeccchhhhHHHHhHhhhccccccccCCceeeeceeeeecC----ceeEEEeecCCCCHHHH
Q 044568            4 TKLSNFYRSSFNARNSPWISRVSWTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTS----VSGKIERPVRNGSLTDI   79 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~----~~~lV~E~~~~gsL~~~   79 (257)
                      +.|+.||+|++ ++..+|||.++-....+...-.... ...+++|+||+++.+.+...+    ..+||||||++|||.++
T Consensus        14 G~fG~Vy~~~~-~g~~VAvK~l~~~~~~~~~~e~Ei~-~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~Ey~~~gsL~~~   91 (303)
T 3hmm_A           14 GRFGEVWRGKW-RGEEVAVKIFSSREERSWFREAEIY-QTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDY   91 (303)
T ss_dssp             CSSSEEEEEEE-TTEEEEEEEECGGGHHHHHHHHHHH-TSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHH
T ss_pred             CCCeEEEEEEE-CCEEEEEEEECccchhhHHHHHHHH-HHhcCCCCCCCcEEEEEEecCCCceEEEEEecCCCCCcHHHH
Confidence            67999999997 5788999987643322222111111 234789999999999998764    57999999999999999


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHhhCC-----CCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc------
Q 044568           80 IFCSAERNPYWNQRVRIALDVAKGILYLHDEC-----EPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF------  148 (257)
Q Consensus        80 l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~-----~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~------  148 (257)
                      |+.   ..+++.++..++.|++.||.|||+++     +++|+||||||+|||++.++.+||+|||+++......      
T Consensus        92 l~~---~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~  168 (303)
T 3hmm_A           92 LNR---YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIA  168 (303)
T ss_dssp             HHH---CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEESCC
T ss_pred             HHh---CCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCccccCCCCceeee
Confidence            964   46999999999999999999999752     3489999999999999999999999999987533221      


Q ss_pred             -ccccCCCCccCcccccCC------CCCccccchhHHHHHHHHHhcCCCCCcCCCChh--------hHHHHHHHHHhhhh
Q 044568          149 -VIDKRDKGYMAPECYKRT------PISVKADVYGYGIVLLETICCRKNMEIDASKPE--------EIILTNWVYKCFIN  213 (257)
Q Consensus       149 -~~~~~~~~~~aPE~~~~~------~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~--------~~~~~~~~~~~~~~  213 (257)
                       ....||+.|+|||++.+.      .++.++|||||||++|||+||..||........        ........ .....
T Consensus       169 ~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~  247 (303)
T 3hmm_A          169 PNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMR-KVVCE  247 (303)
T ss_dssp             -----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHH-HHHTT
T ss_pred             cccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccchHHHHH-HHHhc
Confidence             234789999999999754      367899999999999999999888754321110        00000000 00000


Q ss_pred             hhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          214 RELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ......++....+.+.++.+.+|+.+||+.||++|| |+||++.|
T Consensus       248 ~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L  292 (303)
T 3hmm_A          248 QKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTL  292 (303)
T ss_dssp             SCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHH
T ss_pred             ccCCCCCCccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHH
Confidence            001111111122345678899999999999999999 99998865

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=7.1e-48  Score=325.59  Aligned_cols=218  Identities=19%  Similarity=0.156  Sum_probs=175.4

Q ss_pred             ccccceeeeccc----CCCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEE
Q 044568            4 TKLSNFYRSSFN----ARNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIE   68 (257)
Q Consensus         4 ~~~~~~y~~~~~----~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~   68 (257)
                      +.|+.||+++..    .++.+++|.+.           +.+|++.+         .++.|+||+++.+.+...+..+|||
T Consensus        35 G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il---------~~l~HpnIv~l~~~~~~~~~~~ivm  105 (304)
T 3ubd_A           35 GSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDIL---------VEVNHPFIVKLHYAFQTEGKLYLIL  105 (304)
T ss_dssp             GGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCC---------CCCCCTTEECEEEEEEETTEEEEEE
T ss_pred             CCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHH---------HHCCCCCCCeEEEEEEECCEEEEEE
Confidence            578999999753    34457887643           23344333         4889999999999999999999999


Q ss_pred             eecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC--
Q 044568           69 RPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE--  146 (257)
Q Consensus        69 E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~--  146 (257)
                      |||+||+|.+++.  ....+++.++..++.|++.||.|||++   +|+||||||+|||++.++.+||+|||+++....  
T Consensus       106 Ey~~gg~L~~~l~--~~~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~  180 (304)
T 3ubd_A          106 DFLRGGDLFTRLS--KEVMFTEEDVKFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHE  180 (304)
T ss_dssp             CCCTTCEEHHHHH--HHCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTSCEEEESSEEEEC-----
T ss_pred             EcCCCCCHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHeEEcCCCCEEecccccceeccCCC
Confidence            9999999999997  456799999999999999999999999   999999999999999999999999999975322  


Q ss_pred             -CcccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCC
Q 044568          147 -DFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKV  225 (257)
Q Consensus       147 -~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (257)
                       ......||+.|+|||.+.+..|+.++||||+||++|||++|+.||......   .......     .       ....+
T Consensus       181 ~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~---~~~~~i~-----~-------~~~~~  245 (304)
T 3ubd_A          181 KKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRK---ETMTMIL-----K-------AKLGM  245 (304)
T ss_dssp             CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH---HHHHHHH-----H-------CCCCC
T ss_pred             ccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCHH---HHHHHHH-----c-------CCCCC
Confidence             234568999999999999999999999999999999999999999755211   1111110     0       11133


Q ss_pred             CHHHHHHHHHHHHHcccCCCCCCC-h
Q 044568          226 DKKNLENLVKVGLWCVQDEPALRP-M  250 (257)
Q Consensus       226 ~~~~~~~l~~l~~~cl~~~p~~RP-~  250 (257)
                      +...++.+.+++.+||+.||++|| +
T Consensus       246 p~~~s~~~~~li~~~L~~dP~~R~ta  271 (304)
T 3ubd_A          246 PQFLSPEAQSLLRMLFKRNPANRLGA  271 (304)
T ss_dssp             CTTSCHHHHHHHHHHTCSSGGGSTTC
T ss_pred             CCcCCHHHHHHHHHHcccCHHHCCCC
Confidence            445567899999999999999999 6

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=1.5e-47  Score=330.42  Aligned_cols=229  Identities=19%  Similarity=0.220  Sum_probs=180.3

Q ss_pred             ccccceeeecccCCC------CCeeeccc----------hhhhHHHHhHhhhccccccccC-Cceeeeceeeeec-Ccee
Q 044568            4 TKLSNFYRSSFNARN------SPWISRVS----------WTADIEVLSVAMRGSKCTRIRG-GLLLNVPVRAKLT-SVSG   65 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~------~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h-~~i~~~~~~~~~~-~~~~   65 (257)
                      +.|+.||+|+....+      .+++|.+.          |.+|++.+.         ++.| +|||++.+.+... +..+
T Consensus        75 G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~---------~l~hhpnIV~l~g~~~~~~~~~~  145 (353)
T 4ase_A           75 GAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILI---------HIGHHLNVVNLLGACTKPGGPLM  145 (353)
T ss_dssp             CSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHH---------HHCCCTTBCCEEEEECCTTSCCE
T ss_pred             CCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHH---------HcCCCCcEEEEEEEEEecCCEEE
Confidence            579999999865432      45666543          344555555         7766 8999999998764 5689


Q ss_pred             EEEeecCCCCHHHHHhccC--------------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCC
Q 044568           66 KIERPVRNGSLTDIIFCSA--------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW  131 (257)
Q Consensus        66 lV~E~~~~gsL~~~l~~~~--------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~  131 (257)
                      ||||||++|||.++|+...              ...+++.++..++.|++.||.|||++   +|+||||||+|||+++++
T Consensus       146 iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~---~iiHRDLK~~NILl~~~~  222 (353)
T 4ase_A          146 VIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKN  222 (353)
T ss_dssp             EEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGG
T ss_pred             EEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhC---CeecCccCccceeeCCCC
Confidence            9999999999999997421              34589999999999999999999999   999999999999999999


Q ss_pred             ceEEeeecccccCCCCc-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHH
Q 044568          132 TAKILDFGLAKLPNEDF-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTN  205 (257)
Q Consensus       132 ~~kl~dfg~~~~~~~~~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~  205 (257)
                      .+||+|||+++......     ....+|+.|+|||++.+..|+.++|||||||++|||+| |+.||........   +..
T Consensus       223 ~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~~---~~~  299 (353)
T 4ase_A          223 VVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE---FCR  299 (353)
T ss_dssp             CEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHH---HHH
T ss_pred             CEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCHHHH---HHH
Confidence            99999999998643322     23467888999999999999999999999999999998 9999976532211   111


Q ss_pred             HHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          206 WVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ..         ..-. ....+..+++++.+++.+||+.||++|| ++||++.|
T Consensus       300 ~i---------~~g~-~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L  342 (353)
T 4ase_A          300 RL---------KEGT-RMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHL  342 (353)
T ss_dssp             HH---------HHTC-CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             HH---------HcCC-CCCCCccCCHHHHHHHHHHcCcChhHCcCHHHHHHHH
Confidence            10         0000 1134455677899999999999999999 99998764

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=1.3e-44  Score=305.99  Aligned_cols=222  Identities=17%  Similarity=0.195  Sum_probs=164.1

Q ss_pred             ccccceeeeccc-CCCCCeeeccch----------hhhHHHHhHhhhccccccccCCceeeeceeeeecC----------
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTS----------   62 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~----------   62 (257)
                      +.|+.||+++.. ++..+++|.+..          .+|++.+.         ++.|+|||++.+.+...+          
T Consensus        16 G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~---------~l~HpnIV~~~~~~~~~~~~~~~~~~~~   86 (299)
T 4g31_A           16 GGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALA---------KLEHPGIVRYFNAWLEKNTTEKLQPSSP   86 (299)
T ss_dssp             CC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHT---------TCCCTTBCCEEEEEEEEC----------
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHH---------hCCCCCCCeEEEEEEecCccccccccCC
Confidence            578999999854 566788887642          33444444         889999999999887654          


Q ss_pred             --ceeEEEeecCCCCHHHHHhccCC-CCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeec
Q 044568           63 --VSGKIERPVRNGSLTDIIFCSAE-RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFG  139 (257)
Q Consensus        63 --~~~lV~E~~~~gsL~~~l~~~~~-~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg  139 (257)
                        ..+||||||++|+|.+++..... ...++..++.++.|+++||.|||++   +|+||||||+|||++.++.+||+|||
T Consensus        87 ~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~---~IiHRDlKp~NILl~~~~~vKl~DFG  163 (299)
T 4g31_A           87 KVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGDFG  163 (299)
T ss_dssp             CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCCC
T ss_pred             CcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHC---cCccccCcHHHeEECCCCcEEEccCc
Confidence              36899999999999999974221 2345677889999999999999999   99999999999999999999999999


Q ss_pred             ccccCCCCc---------------ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHH
Q 044568          140 LAKLPNEDF---------------VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILT  204 (257)
Q Consensus       140 ~~~~~~~~~---------------~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~  204 (257)
                      +++......               ....||+.|+|||.+.+..|+.++|||||||++|||++   ||...   .+.  ..
T Consensus       164 la~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~---~~~--~~  235 (299)
T 4g31_A          164 LVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQ---MER--VR  235 (299)
T ss_dssp             CC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSH---HHH--HH
T ss_pred             cceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCc---cHH--HH
Confidence            997643321               23469999999999999999999999999999999996   77532   110  00


Q ss_pred             HHHHHhhhhhhhhhhhcCC--CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          205 NWVYKCFINRELNKLVRGT--KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ..          .......  .......+.+.+++.+||+.||++|| +.|+++
T Consensus       236 ~~----------~~~~~~~~p~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  279 (299)
T 4g31_A          236 TL----------TDVRNLKFPPLFTQKYPCEYVMVQDMLSPSPMERPEAINIIE  279 (299)
T ss_dssp             HH----------HHHHTTCCCHHHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             HH----------HHHhcCCCCCCCcccCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            00          0000100  11122335677899999999999999 999976

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=2.4e-42  Score=299.37  Aligned_cols=174  Identities=18%  Similarity=0.258  Sum_probs=145.8

Q ss_pred             ccccceeeeccc----CCCCCeeeccc-------hhhhHHHHhHhhhccccccc-cCCceeeeceeeeecCceeEEEeec
Q 044568            4 TKLSNFYRSSFN----ARNSPWISRVS-------WTADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~----~~~~~~i~~~~-------~~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      +.|+.||+++..    .++.+++|.+.       +.+|++.+.         .+ .|+||+++...+...+..+||||||
T Consensus        32 G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~E~~~l~---------~~~~h~nIv~l~~~~~~~~~~~lvmE~~  102 (361)
T 4f9c_A           32 GTFSSVYLATAQLQVGPEEKIALKHLIPTSHPIRIAAELQCLT---------VAGGQDNVMGVKYCFRKNDHVVIAMPYL  102 (361)
T ss_dssp             CSSEEEEEEEEEBTTSCEEEEEEEEECTTSCHHHHHHHHHHHH---------HTCSBTTBCCCSEEEEETTEEEEEEECC
T ss_pred             ccCcEEEEEEEcccCCCCCEEEEEEEccccCHHHHHHHHHHHH---------HhcCCCCCceEEEEEEECCEEEEEEeCC
Confidence            579999999753    34567887643       234444444         44 5999999999999999999999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCC-CceEEeeecccccCCCC---
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF-WTAKILDFGLAKLPNED---  147 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~-~~~kl~dfg~~~~~~~~---  147 (257)
                      ++|+|.+++.     .+++.+++.++.|++.||.|||++   ||+||||||+|||++.+ +.+||+|||+++.....   
T Consensus       103 ~g~~L~~~~~-----~l~~~~~~~~~~qll~al~ylH~~---gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~~~~~~  174 (361)
T 4f9c_A          103 EHESFLDILN-----SLSFQEVREYMLNLFKALKRIHQF---GIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTHDTKIE  174 (361)
T ss_dssp             CCCCHHHHHT-----TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTTCEECTTCSCG
T ss_pred             CcccHHHHHc-----CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCcCCHHHeEEeCCCCeEEECcCCCCcccCCcccc
Confidence            9999999994     399999999999999999999999   99999999999999876 79999999999743321   


Q ss_pred             ----------------------------cccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcC
Q 044568          148 ----------------------------FVIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEID  194 (257)
Q Consensus       148 ----------------------------~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~  194 (257)
                                                  .....||+.|+|||++.+. .|+.++||||+||++|||++|+.||...
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf~~~  250 (361)
T 4f9c_A          175 LLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYKA  250 (361)
T ss_dssp             GGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSSSCC
T ss_pred             ccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCCCCC
Confidence                                        1234689999999999876 4899999999999999999999999654

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=5.1e-42  Score=300.51  Aligned_cols=234  Identities=15%  Similarity=0.154  Sum_probs=177.3

Q ss_pred             ccccceeeeccc-CCCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeec------Ccee
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT------SVSG   65 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~------~~~~   65 (257)
                      +.|+.||++... +++.+|||.+.           +.+|++++.         ++.|+|||++.+++...      +..|
T Consensus        65 G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~---------~l~HpnIv~l~~~~~~~~~~~~~~~~~  135 (398)
T 4b99_A           65 GAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILK---------HFKHDNIIAIKDILRPTVPYGEFKSVY  135 (398)
T ss_dssp             CSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHH---------HCCCTTBCCEEEECCCSSCTTTCCCEE
T ss_pred             ccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHH---------hcCCCCcceEeeeeecccccccCCEEE
Confidence            578999999864 56778888753           234555555         88999999999987643      5789


Q ss_pred             EEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC
Q 044568           66 KIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN  145 (257)
Q Consensus        66 lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~  145 (257)
                      ||||||+ |+|.+++.  ....+++.++..++.||+.||.|||++   +|+||||||+|||++.++.+|++|||+++...
T Consensus       136 ivmE~~~-g~L~~~i~--~~~~l~~~~~~~~~~qil~al~ylH~~---~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~~  209 (398)
T 4b99_A          136 VVLDLME-SDLHQIIH--SSQPLTLEHVRYFLYQLLRGLKYMHSA---QVIHRDLKPSNLLVNENCELKIGDFGMARGLC  209 (398)
T ss_dssp             EEEECCS-EEHHHHHT--SSSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTTCBCC-
T ss_pred             EEEeCCC-CCHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHC---cCcCCCcCccccccCCCCCEEEeecceeeecc
Confidence            9999996 68999997  567899999999999999999999999   99999999999999999999999999997543


Q ss_pred             C-------CcccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhh---
Q 044568          146 E-------DFVIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINR---  214 (257)
Q Consensus       146 ~-------~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~---  214 (257)
                      .       ......||+.|+|||++.+. .++.++||||+||++|||++|+.||.+.....   .+...........   
T Consensus       210 ~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~---~l~~I~~~~g~p~~~~  286 (398)
T 4b99_A          210 TSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVH---QLQLIMMVLGTPSPAV  286 (398)
T ss_dssp             ------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHH---HHHHHHHHHCCCCGGG
T ss_pred             cCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHHH---HHHHHHHhcCCCChHH
Confidence            2       22456899999999998875 46899999999999999999999998652211   1111111100000   


Q ss_pred             -------hhhhh---hcCC-CCC-----HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          215 -------ELNKL---VRGT-KVD-----KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       215 -------~~~~~---~~~~-~~~-----~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                             .....   +... ..+     ....+.+.+|+.+||+.||.+|| ++|+++
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~  344 (398)
T 4b99_A          287 IQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALR  344 (398)
T ss_dssp             TC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             hhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence                   00000   0000 111     12246788999999999999999 999875

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=3e-42  Score=315.87  Aligned_cols=229  Identities=17%  Similarity=0.119  Sum_probs=178.7

Q ss_pred             ccccceeeeccc-CCCCCeeeccchhhhH-----H-HHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCH
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSWTADI-----E-VLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSL   76 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~~~~~-----~-~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL   76 (257)
                      +.|+.||+++.. ++..+|+|.+.-....     . .......-..+..+.|+|||++...+.+.+..|||||||+||+|
T Consensus       200 G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~lylVmEy~~GGdL  279 (689)
T 3v5w_A          200 GGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDL  279 (689)
T ss_dssp             CSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEEEEECCCCSCBH
T ss_pred             ccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEEEEEEecCCCCcH
Confidence            678999999965 4566788876421110     0 00000000123367899999999999999999999999999999


Q ss_pred             HHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC-CcccccCCC
Q 044568           77 TDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE-DFVIDKRDK  155 (257)
Q Consensus        77 ~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~-~~~~~~~~~  155 (257)
                      .++|.  ....+++..++.|+.||+.||.|||++   +|+||||||+|||++.++.+||+|||++..... .....+||+
T Consensus       280 ~~~l~--~~~~l~E~~a~~y~~qIl~aL~yLH~~---gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~~~~~~t~~GTp  354 (689)
T 3v5w_A          280 HYHLS--QHGVFSEADMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTH  354 (689)
T ss_dssp             HHHHH--HHCCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTSCEEECCCTTCEECSSCCCCSCCSCG
T ss_pred             HHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCchHHeEEeCCCCEEecccceeeecCCCCCCCccCCc
Confidence            99998  456799999999999999999999999   999999999999999999999999999986543 335668999


Q ss_pred             CccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHH
Q 044568          156 GYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLV  234 (257)
Q Consensus       156 ~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  234 (257)
                      .|+|||++.+ ..|+.++||||+||++|||++|..||..............            .+.....++....+.+.
T Consensus       355 ~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~~------------i~~~~~~~p~~~S~~a~  422 (689)
T 3v5w_A          355 GYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRM------------TLTMAVELPDSFSPELR  422 (689)
T ss_dssp             GGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHHH------------HHHCCCCCCTTSCHHHH
T ss_pred             CccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHh------------hcCCCCCCCccCCHHHH
Confidence            9999999975 5799999999999999999999999976533221111000            01112234455667889


Q ss_pred             HHHHHcccCCCCCCC
Q 044568          235 KVGLWCVQDEPALRP  249 (257)
Q Consensus       235 ~l~~~cl~~~p~~RP  249 (257)
                      +|+.+||+.||.+|+
T Consensus       423 dLI~~lL~~dP~~Rl  437 (689)
T 3v5w_A          423 SLLEGLLQRDVNRRL  437 (689)
T ss_dssp             HHHHHHTCSCGGGCT
T ss_pred             HHHHHHccCCHhHCC
Confidence            999999999999998

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=8.8e-42  Score=312.04  Aligned_cols=228  Identities=17%  Similarity=0.160  Sum_probs=181.6

Q ss_pred             ccccceeeeccc-CCCCCeeeccch---------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCC
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW---------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRN   73 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~---------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~   73 (257)
                      +.|+.||++... +++.+++|.+..         .+|++.+.         .+.|+||+++.+.+...+..+||||||+|
T Consensus       168 G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~---------~l~hpnIv~l~~~~~~~~~~~iv~E~~~g  238 (573)
T 3uto_A          168 GAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMS---------VLRHPTLVNLHDAFEDDNEMVMIYEFMSG  238 (573)
T ss_dssp             ETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHH---------HTCCTTBCCEEEEEECSSEEEEEEECCCC
T ss_pred             ccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHH---------hCCCCCCCeEEEEEEECCEEEEEEeecCC
Confidence            468999999865 456667776432         33444444         88899999999999999999999999999


Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCC--CceEEeeecccccCCCC--cc
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF--WTAKILDFGLAKLPNED--FV  149 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~--~~~kl~dfg~~~~~~~~--~~  149 (257)
                      |+|.++|.. ....+++.++..++.||+.||.|||++   +|+||||||+|||++.+  +.+||+|||+++.....  ..
T Consensus       239 g~L~~~i~~-~~~~l~e~~~~~~~~qi~~al~ylH~~---~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~~~~  314 (573)
T 3uto_A          239 GELFEKVAD-EHNKMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVK  314 (573)
T ss_dssp             CBHHHHHTC-TTSCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTSEEE
T ss_pred             CcHHHHHHH-hCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCChhhccccCCCCCCEEEeeccceeEccCCCcee
Confidence            999999975 456799999999999999999999999   99999999999999854  78999999999865433  35


Q ss_pred             cccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHH
Q 044568          150 IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKN  229 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (257)
                      ...||+.|+|||++.+..|+.++||||+||++|||++|..||.+....   ..+.....     ..   ..-+.......
T Consensus       315 ~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~---~~~~~i~~-----~~---~~~~~~~~~~~  383 (573)
T 3uto_A          315 VTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDD---ETLRNVKS-----CD---WNMDDSAFSGI  383 (573)
T ss_dssp             EECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHH---HHHHHHHT-----TC---CCCCSGGGTTS
T ss_pred             eeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHH---HHHHHHHh-----CC---CCCCcccccCC
Confidence            568999999999999999999999999999999999999999755211   11111100     00   00000111233


Q ss_pred             HHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          230 LENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       230 ~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .+.+.+|+.+||+.||.+|| +.|+++
T Consensus       384 s~~~~dli~~~L~~dp~~R~t~~e~l~  410 (573)
T 3uto_A          384 SEDGKDFIRKLLLADPNTRMTIHQALE  410 (573)
T ss_dssp             CHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             CHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            46788999999999999999 999986

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=100.00  E-value=2.3e-41  Score=288.96  Aligned_cols=245  Identities=30%  Similarity=0.497  Sum_probs=196.2

Q ss_pred             ccccceeeecccCCCCCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRN   73 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~   73 (257)
                      +.++.||+++..++..+++|...          +.+|++.+.         .+.|+||+++.+.+...+..++||||+++
T Consensus        41 G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~---------~l~h~~iv~~~~~~~~~~~~~lv~e~~~~  111 (326)
T 3uim_A           41 GGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMIS---------MAVHRNLLRLRGFCMTPTERLLVYPYMAN  111 (326)
T ss_dssp             CSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGG---------TCCCTTBCCCCEEECCSSCCEEEEECCTT
T ss_pred             CCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHH---------hccCCCccceEEEEecCCceEEEEEeccC
Confidence            57899999998888899998754          234444444         78899999999999999999999999999


Q ss_pred             CCHHHHHhccC--CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc---
Q 044568           74 GSLTDIIFCSA--ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF---  148 (257)
Q Consensus        74 gsL~~~l~~~~--~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~---  148 (257)
                      |+|.+++....  ...+++..+..++.|++.||.|||+++.++++||||||+||+++.++.+||+|||++.......   
T Consensus       112 ~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~  191 (326)
T 3uim_A          112 GSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHV  191 (326)
T ss_dssp             CBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEECCCSSCEECCSSSSCE
T ss_pred             CCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEeccCccccccCcccccc
Confidence            99999998532  3349999999999999999999999866689999999999999999999999999987543221   


Q ss_pred             -ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCC-ChhhHHHHHHHHHhhhhhhhhhhhcCC---
Q 044568          149 -VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDAS-KPEEIILTNWVYKCFINRELNKLVRGT---  223 (257)
Q Consensus       149 -~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---  223 (257)
                       ....+|+.|+|||.+.+..++.++||||||+++|||++|+.||..... .........|..............+..   
T Consensus       192 ~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (326)
T 3uim_A          192 TTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQG  271 (326)
T ss_dssp             ECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTTTSSCCSTTSSCTTCTT
T ss_pred             cccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHHhhchhhhhhcChhhcc
Confidence             334588899999999888899999999999999999999999963211 111222333333333333333333322   


Q ss_pred             CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          224 KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       224 ~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ..+....+.+.+++.+||+.||.+|| ++|+++.|
T Consensus       272 ~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L  306 (326)
T 3uim_A          272 NYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRML  306 (326)
T ss_dssp             SCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHh
Confidence            55777889999999999999999999 99999875

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=100.00  E-value=3.4e-41  Score=287.56  Aligned_cols=241  Identities=27%  Similarity=0.450  Sum_probs=192.7

Q ss_pred             ccccceeeecccCCCCCeeeccch---------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVSW---------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNG   74 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~~---------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~g   74 (257)
                      +.++.||+++..++..+++|....         .+|++.+.         +++|+||+++.+.+...+..++||||+++|
T Consensus        50 G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~  120 (321)
T 2qkw_B           50 GVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLS---------FCRHPHLVSLIGFCDERNEMILIYKYMENG  120 (321)
T ss_dssp             CSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGG---------SCCCTTBCCEEEECCCTTCCEEEEECCTTC
T ss_pred             CCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHH---------hCCCCCEeeEEEEEcCCCeEEEEEEcCCCC
Confidence            578999999988888889986542         33443333         788999999999999999999999999999


Q ss_pred             CHHHHHhccC--CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC-----
Q 044568           75 SLTDIIFCSA--ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED-----  147 (257)
Q Consensus        75 sL~~~l~~~~--~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~-----  147 (257)
                      +|.+++....  ...+++.++..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++......     
T Consensus       121 ~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~  197 (321)
T 2qkw_B          121 NLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTR---AIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHL  197 (321)
T ss_dssp             BTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCSTTEEECTTCCEEECCCTTCEECSSSSCCCC
T ss_pred             cHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCC---CeecCCCCHHHEEECCCCCEEEeeccccccccccccccc
Confidence            9999997532  23589999999999999999999999   9999999999999999999999999998753321     


Q ss_pred             cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC---C
Q 044568          148 FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT---K  224 (257)
Q Consensus       148 ~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  224 (257)
                      .....+|+.|+|||.+.+..++.++||||||+++|||++|+.||........ .....|.............+++.   .
T Consensus       198 ~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (321)
T 2qkw_B          198 STVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREM-VNLAEWAVESHNNGQLEQIVDPNLADK  276 (321)
T ss_dssp             BCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSC-CCHHHHTHHHHTTTCCCSSSSSSCTTC
T ss_pred             ccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHH-HHHHHHhhhccccccHHHhcChhhccc
Confidence            1233578889999999888899999999999999999999999976543321 12223332222223333333322   4


Q ss_pred             CCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          225 VDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       225 ~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      .+.+.+..+.+++.+||+.||++|| ++|+++.|
T Consensus       277 ~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L  310 (321)
T 2qkw_B          277 IRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKL  310 (321)
T ss_dssp             SCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHH
Confidence            5677889999999999999999999 99998764

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=1.8e-40  Score=282.12  Aligned_cols=228  Identities=21%  Similarity=0.342  Sum_probs=175.8

Q ss_pred             ccccceeeecccCCCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +.++.||+++. .+..+++|...           +.+|++.+.         +++|+||+++.+.+...+..++||||++
T Consensus        48 G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~---------~l~hp~iv~~~~~~~~~~~~~lv~e~~~  117 (309)
T 3p86_A           48 GSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMK---------RLRHPNIVLFMGAVTQPPNLSIVTEYLS  117 (309)
T ss_dssp             CSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHH---------HCCCTTBCCEEEEECSTTCCEEEEECCT
T ss_pred             CCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHH---------hCCCCCEeeEEEEEEECCceEEEEecCC
Confidence            57899999986 56678887643           234555555         7889999999999999999999999999


Q ss_pred             CCCHHHHHhccC-CCCCCHHHHHHHHHHHHHHHHHHhhCCCCC--eeeccCCCCceeeCCCCceEEeeecccccCCCC--
Q 044568           73 NGSLTDIIFCSA-ERNPYWNQRVRIALDVAKGILYLHDECEPP--ILHCDIKPQNILMDEFWTAKILDFGLAKLPNED--  147 (257)
Q Consensus        73 ~gsL~~~l~~~~-~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~--i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~--  147 (257)
                      +|+|.+++.... ...+++..+..++.|++.||.|||++   +  ++||||||+||+++.++.+||+|||++......  
T Consensus       118 ~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~~~  194 (309)
T 3p86_A          118 RGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR---NPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFL  194 (309)
T ss_dssp             TCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTS---SSCCCCTTCCGGGEEECTTCCEEECCCC----------
T ss_pred             CCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcC---CCCEECCCCChhhEEEeCCCcEEECCCCCCcccccccc
Confidence            999999997421 12389999999999999999999999   8  999999999999999999999999998754332  


Q ss_pred             -cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCC
Q 044568          148 -FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVD  226 (257)
Q Consensus       148 -~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (257)
                       .....+|+.|+|||.+.+..++.++||||||+++|||++|+.||......   ....          ...........+
T Consensus       195 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~---~~~~----------~~~~~~~~~~~~  261 (309)
T 3p86_A          195 SSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPA---QVVA----------AVGFKCKRLEIP  261 (309)
T ss_dssp             -------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHH---HHHH----------HHHHSCCCCCCC
T ss_pred             ccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH---HHHH----------HHHhcCCCCCCC
Confidence             24457889999999999999999999999999999999999999754211   0000          000111122344


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          227 KKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       227 ~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ...++.+.+++.+||+.||.+|| ++|+++.|
T Consensus       262 ~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L  293 (309)
T 3p86_A          262 RNLNPQVAAIIEGCWTNEPWKRPSFATIMDLL  293 (309)
T ss_dssp             TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence            55667899999999999999999 99998864

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=2.2e-40  Score=279.99  Aligned_cols=225  Identities=18%  Similarity=0.153  Sum_probs=181.1

Q ss_pred             ccccceeeecc-cCCCCCeeeccch---------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCC
Q 044568            4 TKLSNFYRSSF-NARNSPWISRVSW---------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRN   73 (257)
Q Consensus         4 ~~~~~~y~~~~-~~~~~~~i~~~~~---------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~   73 (257)
                      +.++.||++.. .++..+++|....         .+|++.+.         ++.|+||+++.+.+...+..++||||+++
T Consensus        31 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~---------~l~hp~iv~~~~~~~~~~~~~lv~e~~~~  101 (297)
T 3fxz_A           31 GASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMR---------ENKNPNIVNYLDSYLVGDELWVVMEYLAG  101 (297)
T ss_dssp             ETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHH---------HCCCTTBCCEEEEEEETTEEEEEEECCTT
T ss_pred             CCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHh---------cCCCCCCCeEeEEEEECCEEEEEEECCCC
Confidence            57899999985 5566778876542         33444444         78899999999999999999999999999


Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---ccc
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---FVI  150 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~~~  150 (257)
                      |+|.+++..   ..+++.++..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++......   ...
T Consensus       102 ~~L~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~  175 (297)
T 3fxz_A          102 GSLTDVVTE---TCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRST  175 (297)
T ss_dssp             CBHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCCBCC
T ss_pred             CCHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEECCCCCEEEeeCCCceecCCcccccCC
Confidence            999999964   3699999999999999999999999   9999999999999999999999999998754332   234


Q ss_pred             ccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHH
Q 044568          151 DKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNL  230 (257)
Q Consensus       151 ~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (257)
                      ..+|+.|+|||.+.+..++.++||||||+++|||++|..||.......   .....         ..........+...+
T Consensus       176 ~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~---~~~~~---------~~~~~~~~~~~~~~~  243 (297)
T 3fxz_A          176 MVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLR---ALYLI---------ATNGTPELQNPEKLS  243 (297)
T ss_dssp             CCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH---HHHHH---------HHHCSCCCSCGGGSC
T ss_pred             ccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH---HHHHH---------HhCCCCCCCCccccC
Confidence            578889999999999999999999999999999999999997542111   11000         001111112344556


Q ss_pred             HHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          231 ENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       231 ~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ..+.+++.+||+.||++|| ++|+++
T Consensus       244 ~~~~~li~~~l~~dp~~Rps~~ell~  269 (297)
T 3fxz_A          244 AIFRDFLNRCLEMDVEKRGSAKELLQ  269 (297)
T ss_dssp             HHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             HHHHHHHHHHccCChhHCcCHHHHhh
Confidence            7899999999999999999 999975

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.2e-40  Score=281.15  Aligned_cols=229  Identities=22%  Similarity=0.295  Sum_probs=182.0

Q ss_pred             ccccceeeecccC-CCCCeeeccc---------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCC
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS---------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRN   73 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~   73 (257)
                      +.++.||+++... +..+++|...         +.+|++.+.         ++.|+||+++.+.+...+..++||||+++
T Consensus        21 G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~---------~l~hp~iv~~~~~~~~~~~~~lv~e~~~~   91 (310)
T 3s95_A           21 GCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMR---------CLEHPNVLKFIGVLYKDKRLNFITEYIKG   91 (310)
T ss_dssp             CSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHT---------TCCCTTBCCEEEEEEETTEEEEEEECCTT
T ss_pred             CCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHH---------hCCCcCcccEEEEEecCCeeEEEEEecCC
Confidence            5789999999765 5556677542         334555554         78899999999999999999999999999


Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcc----
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFV----  149 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~----  149 (257)
                      |+|.+++.. ....+++.++..++.|++.||.|||++   +++|+||||+||+++.++.+||+|||++........    
T Consensus        92 ~~L~~~l~~-~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~  167 (310)
T 3s95_A           92 GTLRGIIKS-MDSQYPWSQRVSFAKDIASGMAYLHSM---NIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEG  167 (310)
T ss_dssp             CBHHHHHHH-CCTTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEECTTSCEEECCCTTCEECC--------
T ss_pred             CcHHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCcCeEEECCCCCEEEeecccceecccccccccc
Confidence            999999986 467799999999999999999999999   999999999999999999999999999875433221    


Q ss_pred             -------------cccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhh
Q 044568          150 -------------IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINREL  216 (257)
Q Consensus       150 -------------~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~  216 (257)
                                   ...||+.|+|||.+.+..++.++||||||+++|||++|..||.............       .....
T Consensus       168 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~-------~~~~~  240 (310)
T 3s95_A          168 LRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLN-------VRGFL  240 (310)
T ss_dssp             ------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBC-------HHHHH
T ss_pred             cccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhh-------hhccc
Confidence                         3468889999999999999999999999999999999999997543322111000       00000


Q ss_pred             hhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          217 NKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       217 ~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ..     ..+...++.+.+++.+||+.||++|| ++|+++.|
T Consensus       241 ~~-----~~~~~~~~~l~~li~~~l~~dP~~Rps~~~l~~~L  277 (310)
T 3s95_A          241 DR-----YCPPNCPPSFFPITVRCCDLDPEKRPSFVKLEHWL  277 (310)
T ss_dssp             HH-----TCCTTCCTTHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             cc-----cCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence            00     11233445688999999999999999 99998764

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=4.7e-40  Score=281.84  Aligned_cols=222  Identities=14%  Similarity=0.167  Sum_probs=180.8

Q ss_pred             ccccceeeecc-cCCCCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            4 TKLSNFYRSSF-NARNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~-~~~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      +.++.||++.. .++..+++|...-           .+|++.+.         .+.|+||+++.+.+...+..++||||+
T Consensus        26 G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~---------~l~hpnIv~l~~~~~~~~~~~lv~e~~   96 (328)
T 3fe3_A           26 GNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMK---------ILNHPNIVKLFEVIETEKTLYLIMEYA   96 (328)
T ss_dssp             CSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHH---------HCCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred             CCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHH---------hCCCCCEeeEEEEEEECCEEEEEEECC
Confidence            57899999996 5667788886532           23444444         788999999999999999999999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC--CCcc
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN--EDFV  149 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~--~~~~  149 (257)
                      ++|+|.+++..  ...+++.++..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++....  ....
T Consensus        97 ~~~~L~~~l~~--~~~l~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~  171 (328)
T 3fe3_A           97 SGGEVFDYLVA--HGRMKEKEARSKFRQIVSAVQYCHQK---RIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGKLD  171 (328)
T ss_dssp             TTCBHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSSCGGG
T ss_pred             CCCcHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCCHHHEEEcCCCCEEEeeccCceecCCCCccc
Confidence            99999999973  46699999999999999999999999   99999999999999999999999999987533  2335


Q ss_pred             cccCCCCccCcccccCCCCC-ccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcC-CCCCH
Q 044568          150 IDKRDKGYMAPECYKRTPIS-VKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRG-TKVDK  227 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~~~~~-~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  227 (257)
                      ...+|+.|+|||.+.+..+. .++||||+||++|||++|+.||.......   ...             ..... ...+.
T Consensus       172 ~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~---~~~-------------~i~~~~~~~p~  235 (328)
T 3fe3_A          172 AFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKE---LRE-------------RVLRGKYRIPF  235 (328)
T ss_dssp             TTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HHH-------------HHHHCCCCCCT
T ss_pred             cccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCHHH---HHH-------------HHHhCCCCCCC
Confidence            56789999999999888765 89999999999999999999997552110   000             11111 12344


Q ss_pred             HHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          228 KNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       228 ~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .....+.+++.+||+.||.+|| ++|+++
T Consensus       236 ~~s~~~~~li~~~L~~dP~~R~t~~eil~  264 (328)
T 3fe3_A          236 YMSTDCENLLKRFLVLNPIKRGTLEQIMK  264 (328)
T ss_dssp             TSCHHHHHHHHHHCCSSTTTSCCHHHHTT
T ss_pred             CCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence            4567789999999999999999 999975

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=100.00  E-value=6.8e-40  Score=284.43  Aligned_cols=245  Identities=12%  Similarity=0.094  Sum_probs=183.9

Q ss_pred             ccccceeeecccCC------CCCeeeccc-----hhhhHHHHhHhhhc------cccccccCCceeeeceeeeec----C
Q 044568            4 TKLSNFYRSSFNAR------NSPWISRVS-----WTADIEVLSVAMRG------SKCTRIRGGLLLNVPVRAKLT----S   62 (257)
Q Consensus         4 ~~~~~~y~~~~~~~------~~~~i~~~~-----~~~~~~~~~~~~~~------~~~~~~~h~~i~~~~~~~~~~----~   62 (257)
                      +.++.||++....+      ..+++|...     +.++++.+......      .....+.|+||+++.+.+...    .
T Consensus        46 G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~~  125 (364)
T 3op5_A           46 GGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYWGSGLHDKNGKS  125 (364)
T ss_dssp             C-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCEEEEEEEEETTEE
T ss_pred             CCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeEEeeeeeccCCcc
Confidence            57899999987765      456777644     23444444311110      023477899999999998875    4


Q ss_pred             ceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeC--CCCceEEeeecc
Q 044568           63 VSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD--EFWTAKILDFGL  140 (257)
Q Consensus        63 ~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~--~~~~~kl~dfg~  140 (257)
                      ..+|||||+ +++|.+++.. ....+++.++..++.|++.||.|||++   +|+||||||+||+++  .++.+||+|||+
T Consensus       126 ~~~lv~e~~-g~~L~~~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~---~iiHrDlkp~Nill~~~~~~~~kl~DFG~  200 (364)
T 3op5_A          126 YRFMIMDRF-GSDLQKIYEA-NAKRFSRKTVLQLSLRILDILEYIHEH---EYVHGDIKASNLLLNYKNPDQVYLVDYGL  200 (364)
T ss_dssp             EEEEEEECE-EEEHHHHHHH-TTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEESSCTTCEEECCCTT
T ss_pred             eEEEEEeCC-CCCHHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHHC---CeEEecCCHHHEEEecCCCCeEEEEECCc
Confidence            589999999 8999999986 557799999999999999999999999   999999999999998  889999999999


Q ss_pred             cccCCCCc----------ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHh
Q 044568          141 AKLPNEDF----------VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKC  210 (257)
Q Consensus       141 ~~~~~~~~----------~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~  210 (257)
                      ++......          ....+|+.|+|||.+.+..++.++||||||+++|||++|+.||.................  
T Consensus       201 a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~--  278 (364)
T 3op5_A          201 AYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRY--  278 (364)
T ss_dssp             CEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHHHHHHHH--
T ss_pred             ceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHh--
Confidence            87543221          233488999999999998999999999999999999999999986533332221111111  


Q ss_pred             hhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          211 FINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                        ......+++........+..+.+++..||+.||.+|| +++|++.|
T Consensus       279 --~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l  324 (364)
T 3op5_A          279 --RENIASLMDKCFPAANAPGEIAKYMETVKLLDYTEKPLYENLRDIL  324 (364)
T ss_dssp             --HHCHHHHHHHHSCTTCCCHHHHHHHHHHHTCCTTCCCCHHHHHHHH
T ss_pred             --hhhHHHHHHHhcccccCHHHHHHHHHHHhcCCCCCCCCHHHHHHHH
Confidence              1122222221111233456799999999999999999 99998764

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=100.00  E-value=2.1e-40  Score=289.15  Aligned_cols=227  Identities=16%  Similarity=0.215  Sum_probs=182.1

Q ss_pred             ccccceeeeccc-CCCCCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +.++.||+|+.. ++..+++|...          +.+|++.+.         ++.|+||+++.+.+...+..++||||++
T Consensus       125 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~---------~l~hpniv~~~~~~~~~~~~~lv~e~~~  195 (377)
T 3cbl_A          125 GNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILK---------QYSHPNIVRLIGVCTQKQPIYIVMELVQ  195 (377)
T ss_dssp             ETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHT---------TCCCTTBCCEEEEECSSSSCEEEEECCT
T ss_pred             CCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHH---------hCCCCCEEEEEEEEecCCCcEEEEEcCC
Confidence            578999999986 56667887643          344555555         7889999999999999999999999999


Q ss_pred             CCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcccc-
Q 044568           73 NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVID-  151 (257)
Q Consensus        73 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~-  151 (257)
                      +|+|.+++.. ....+++.++..++.|++.||.|||++   +++||||+|+||+++.++.+||+|||+++......... 
T Consensus       196 ~g~L~~~l~~-~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~~~~  271 (377)
T 3cbl_A          196 GGDFLTFLRT-EGARLRVKTLLQMVGDAAAGMEYLESK---CCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAAS  271 (377)
T ss_dssp             TCBHHHHHHH-HGGGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGGCEECTTSEEECC
T ss_pred             CCCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CcCCcccCHHHEEEcCCCcEEECcCCCceecCCCceeec
Confidence            9999999975 445689999999999999999999999   99999999999999999999999999987544332211 


Q ss_pred             ----cCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCC
Q 044568          152 ----KRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVD  226 (257)
Q Consensus       152 ----~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (257)
                          .++..|+|||.+....++.++||||||+++|||++ |..||......    ......         .. ......+
T Consensus       272 ~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~----~~~~~~---------~~-~~~~~~~  337 (377)
T 3cbl_A          272 GGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQ----QTREFV---------EK-GGRLPCP  337 (377)
T ss_dssp             SSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHH----HHHHHH---------HT-TCCCCCC
T ss_pred             CCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH----HHHHHH---------Hc-CCCCCCC
Confidence                23456999999998889999999999999999998 99999754211    111100         00 0011334


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          227 KKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       227 ~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ..++..+.+++.+||+.||++|| ++++++.|
T Consensus       338 ~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L  369 (377)
T 3cbl_A          338 ELCPDAVFRLMEQCWAYEPGQRPSFSTIYQEL  369 (377)
T ss_dssp             TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHcCCCchhCcCHHHHHHHH
Confidence            45667899999999999999999 99998764

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=4.2e-40  Score=281.69  Aligned_cols=227  Identities=18%  Similarity=0.247  Sum_probs=179.9

Q ss_pred             ccccceeeecccCCCC----Ceeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEe
Q 044568            4 TKLSNFYRSSFNARNS----PWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIER   69 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~----~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E   69 (257)
                      +.++.||+++....+.    +++|...          +.+|++.+.         ++.|+||+++.+.+...+..++|||
T Consensus        60 G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~~~~~~~lv~e  130 (325)
T 3kul_A           60 GDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMG---------QFDHPNIIRLEGVVTRGRLAMIVTE  130 (325)
T ss_dssp             TTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHT---------TCCCTTBCCEEEEECGGGCCEEEEE
T ss_pred             CCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHH---------hCCCCCCCcEEEEEEeCCccEEEee
Confidence            5789999999864443    6777654          233444444         7889999999999999999999999


Q ss_pred             ecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-
Q 044568           70 PVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-  148 (257)
Q Consensus        70 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-  148 (257)
                      |+++|+|.+++.. ....+++.++..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++....... 
T Consensus       131 ~~~~~~L~~~l~~-~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  206 (325)
T 3kul_A          131 YMENGSLDTFLRT-HDGQFTIMQLVGMLRGVGAGMRYLSDL---GYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPD  206 (325)
T ss_dssp             CCTTCBHHHHHHT-TTTCSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCSSCEECC----
T ss_pred             CCCCCcHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEECCCCCEEECCCCcccccccCcc
Confidence            9999999999975 456799999999999999999999999   99999999999999999999999999987644322 


Q ss_pred             -----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcC
Q 044568          149 -----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRG  222 (257)
Q Consensus       149 -----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (257)
                           ....+|..|+|||.+.+..++.++||||||+++|||++ |..||......   .....          .... ..
T Consensus       207 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~---~~~~~----------~~~~-~~  272 (325)
T 3kul_A          207 AAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNR---DVISS----------VEEG-YR  272 (325)
T ss_dssp             CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHH---HHHHH----------HHTT-CC
T ss_pred             ceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHH---HHHHH----------HHcC-CC
Confidence                 22234567999999998889999999999999999999 99999654111   11100          0000 01


Q ss_pred             CCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          223 TKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       223 ~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ...+...+..+.+++.+||+.||++|| +.|+++.|
T Consensus       273 ~~~~~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L  308 (325)
T 3kul_A          273 LPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVL  308 (325)
T ss_dssp             CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCCCCCcCHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence            123445667899999999999999999 99998864

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=100.00  E-value=4.6e-40  Score=286.65  Aligned_cols=227  Identities=19%  Similarity=0.248  Sum_probs=171.9

Q ss_pred             ccccceeeeccc----CCCCCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEe
Q 044568            4 TKLSNFYRSSFN----ARNSPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIER   69 (257)
Q Consensus         4 ~~~~~~y~~~~~----~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E   69 (257)
                      +.++.||+|+..    .+..+++|...          +.+|++.+.         ++.|+||+++.+.+...+..++|||
T Consensus        56 G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~---------~l~h~niv~~~~~~~~~~~~~lv~e  126 (373)
T 2qol_A           56 GEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMG---------QFDHPNIIRLEGVVTKSKPVMIVTE  126 (373)
T ss_dssp             CSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHT---------TCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             CCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHH---------hCCCCCCCeEEEEEeeCCceEEEEe
Confidence            578999999876    45667888754          233444444         7889999999999999999999999


Q ss_pred             ecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-
Q 044568           70 PVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-  148 (257)
Q Consensus        70 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-  148 (257)
                      |+++|+|.+++.. ....+++.++..++.|++.||.|||++   +++||||||+||+++.++.+||+|||+++...... 
T Consensus       127 ~~~~~sL~~~l~~-~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~  202 (373)
T 2qol_A          127 YMENGSLDSFLRK-HDAQFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPE  202 (373)
T ss_dssp             CCTTCBHHHHHHT-TTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC-----------
T ss_pred             CCCCCcHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEEcCCCCEEECcCccccccccCCc
Confidence            9999999999985 456799999999999999999999999   99999999999999999999999999987543321 


Q ss_pred             -----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcC
Q 044568          149 -----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRG  222 (257)
Q Consensus       149 -----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (257)
                           ....++..|+|||.+.+..++.++||||||+++||+++ |+.||.....   .. ....         ...... 
T Consensus       203 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~---~~-~~~~---------i~~~~~-  268 (373)
T 2qol_A          203 AAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSN---QD-VIKA---------VDEGYR-  268 (373)
T ss_dssp             -----------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCH---HH-HHHH---------HHTTEE-
T ss_pred             cceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCH---HH-HHHH---------HHcCCC-
Confidence                 11233567999999998899999999999999999998 9999964411   10 1000         000000 


Q ss_pred             CCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          223 TKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       223 ~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ...+...+..+.+++.+||+.||.+|| +.|+++.|
T Consensus       269 ~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L  304 (373)
T 2qol_A          269 LPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSIL  304 (373)
T ss_dssp             CCCCTTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCCCccccHHHHHHHHHHhCcChhhCcCHHHHHHHH
Confidence            122345567899999999999999999 99998864

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=100.00  E-value=5.3e-40  Score=292.86  Aligned_cols=227  Identities=21%  Similarity=0.239  Sum_probs=182.7

Q ss_pred             ccccceeeecccCCCCCeeeccc-------hhhhHHHHhHhhhccccccccCCceeeeceeeeecC-ceeEEEeecCCCC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS-------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTS-VSGKIERPVRNGS   75 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~-------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~-~~~lV~E~~~~gs   75 (257)
                      +.++.||+|+.. +..+++|...       +.+|++.+.         ++.|+||+++.+.+...+ ..++||||+++|+
T Consensus       204 G~fg~V~~~~~~-~~~vavK~~~~~~~~~~~~~E~~~l~---------~l~h~niv~~~~~~~~~~~~~~iv~e~~~~g~  273 (450)
T 1k9a_A          204 GEFGDVMLGDYR-GNKVAVKCIKNDATAQAFLAEASVMT---------QLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGS  273 (450)
T ss_dssp             CSSEEEEEEEET-TEEEEEEEESSCTTSHHHHHHHHHHH---------TCCCTTBCCEEEEEECTTSCEEEEEECCTTCB
T ss_pred             cCCeeEEEEEec-CCeEEEEEeCCchHHHHHHHHHHHHH---------hccCCCEEEEEEEEEcCCCceEEEEEecCCCc
Confidence            578999999876 5678888654       455666665         889999999999987665 7899999999999


Q ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcccccCCC
Q 044568           76 LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK  155 (257)
Q Consensus        76 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~  155 (257)
                      |.+++.......+++..+..++.|++.||.|||++   +++||||||+||+++.++.+||+|||+++..........++.
T Consensus       274 L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~  350 (450)
T 1k9a_A          274 LVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPV  350 (450)
T ss_dssp             HHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTSCEEECCCTTCEECC------CCCT
T ss_pred             HHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEECCCCCEEEeeCCCcccccccccCCCCCc
Confidence            99999864455589999999999999999999999   999999999999999999999999999886554444456678


Q ss_pred             CccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHH
Q 044568          156 GYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLV  234 (257)
Q Consensus       156 ~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  234 (257)
                      .|+|||.+.+..++.++||||||+++|||++ |+.||........   ...          +.... ....+..+++.+.
T Consensus       351 ~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~---~~~----------i~~~~-~~~~p~~~~~~l~  416 (450)
T 1k9a_A          351 KWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDV---VPR----------VEKGY-KMDAPDGCPPAVY  416 (450)
T ss_dssp             TTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTTH---HHH----------HHTTC-CCCCCTTCCHHHH
T ss_pred             ceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHH---HHH----------HHcCC-CCCCCCcCCHHHH
Confidence            8999999999999999999999999999998 9999975532211   000          00000 1133455678899


Q ss_pred             HHHHHcccCCCCCCC-hHHHHHhC
Q 044568          235 KVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       235 ~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      +++.+||+.||.+|| +.|+++.|
T Consensus       417 ~li~~cl~~dp~~Rpt~~~l~~~L  440 (450)
T 1k9a_A          417 DVMKNCWHLDAATRPTFLQLREQL  440 (450)
T ss_dssp             HHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             HHHHHHcCCChhHCcCHHHHHHHH
Confidence            999999999999999 99998764

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=5.8e-40  Score=273.04  Aligned_cols=227  Identities=17%  Similarity=0.253  Sum_probs=184.4

Q ss_pred             ccccceeeecccCCCCCeeeccc--------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS--------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGS   75 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gs   75 (257)
                      +.++.||++...++..+++|...        +.+|++.+.         ++.|+|++++.+.+...+..++||||+++|+
T Consensus        21 G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~---------~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   91 (269)
T 4hcu_A           21 GQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMM---------KLSHPKLVQLYGVCLEQAPICLVFEFMEHGC   91 (269)
T ss_dssp             CSSCEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHH---------TCCCTTBCCEEEEECSSSSEEEEEECCTTCB
T ss_pred             CCccEEEEEEecCCCeEEEEEecccccCHHHHHHHHHHHH---------hCCCCCEeeEEEEEecCCceEEEEEeCCCCc
Confidence            57899999999888888888754        345555555         7889999999999999999999999999999


Q ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc----ccc
Q 044568           76 LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF----VID  151 (257)
Q Consensus        76 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~----~~~  151 (257)
                      |.+++.. ....+++..+..++.|++.||.|||++   +++|+||||+||+++.++.++|+|||++.......    ...
T Consensus        92 L~~~l~~-~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~  167 (269)
T 4hcu_A           92 LSDYLRT-QRGLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGT  167 (269)
T ss_dssp             HHHHHHT-TTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHHHSTTST
T ss_pred             HHHHHHh-cCcccCHHHHHHHHHHHHHHHHHHHhC---CeecCCcchheEEEcCCCCEEeccccccccccccccccccCc
Confidence            9999975 556799999999999999999999999   99999999999999999999999999987543322    233


Q ss_pred             cCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHH
Q 044568          152 KRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNL  230 (257)
Q Consensus       152 ~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (257)
                      .+++.|+|||.+.+..++.++||||+|+++|+|++ |..||......   .....          ..... ....+...+
T Consensus       168 ~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~---~~~~~----------~~~~~-~~~~~~~~~  233 (269)
T 4hcu_A          168 KFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNS---EVVED----------ISTGF-RLYKPRLAS  233 (269)
T ss_dssp             TCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH---HHHHH----------HHTTC-CCCCCTTSC
T ss_pred             ccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHH---HHHHH----------HhcCc-cCCCCCcCC
Confidence            44567999999998889999999999999999999 99999754211   11110          00000 112233445


Q ss_pred             HHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          231 ENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       231 ~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ..+.+++.+||+.||++|| ++|+++.|
T Consensus       234 ~~~~~li~~~l~~~p~~Rps~~~ll~~l  261 (269)
T 4hcu_A          234 THVYQIMNHCWRERPEDRPAFSRLLRQL  261 (269)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             HHHHHHHHHHccCCcccCcCHHHHHHHH
Confidence            7799999999999999999 99998864

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=3.1e-39  Score=275.89  Aligned_cols=224  Identities=17%  Similarity=0.151  Sum_probs=181.5

Q ss_pred             ccccceeeeccc-CCCCCeeeccc---------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCC
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS---------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRN   73 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~   73 (257)
                      +.++.||+++.. ++..+++|...         +.+|++.+.         +++|+|++++.+.+...+..++||||+++
T Consensus        56 G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~---------~l~h~niv~~~~~~~~~~~~~lv~e~~~~  126 (321)
T 2c30_A           56 GSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMR---------DYQHFNVVEMYKSYLVGEELWVLMEFLQG  126 (321)
T ss_dssp             ETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHT---------TCCCTTBCCEEEEEEETTEEEEEECCCCS
T ss_pred             CCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHH---------hCCCCCcceEEEEEEECCEEEEEEecCCC
Confidence            568999999976 67778888654         234444444         88899999999999999999999999999


Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---ccc
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---FVI  150 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~~~  150 (257)
                      |+|.+++.   ...+++.++..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++......   ...
T Consensus       127 ~~L~~~l~---~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~  200 (321)
T 2c30_A          127 GALTDIVS---QVRLNEEQIATVCEAVLQALAYLHAQ---GVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKS  200 (321)
T ss_dssp             CBHHHHHT---TCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBCC
T ss_pred             CCHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCcEEEeeeeeeeecccCcccccc
Confidence            99999985   45799999999999999999999999   9999999999999999999999999998754432   244


Q ss_pred             ccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC-CCCHHH
Q 044568          151 DKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT-KVDKKN  229 (257)
Q Consensus       151 ~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  229 (257)
                      ..+|+.|+|||.+.+..++.++||||||+++|||++|+.||......   .....          +.....+. ......
T Consensus       201 ~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~~---~~~~~----------~~~~~~~~~~~~~~~  267 (321)
T 2c30_A          201 LVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPV---QAMKR----------LRDSPPPKLKNSHKV  267 (321)
T ss_dssp             CCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH---HHHHH----------HHHSSCCCCTTGGGS
T ss_pred             ccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH---HHHHH----------HhcCCCCCcCccccC
Confidence            57888999999999888999999999999999999999999754211   11110          11111111 122334


Q ss_pred             HHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          230 LENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       230 ~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ++.+.+++.+||+.||++|| ++|+++
T Consensus       268 ~~~l~~li~~~l~~dp~~Rps~~ell~  294 (321)
T 2c30_A          268 SPVLRDFLERMLVRDPQERATAQELLD  294 (321)
T ss_dssp             CHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             CHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            56789999999999999999 999985

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=100.00  E-value=2.8e-40  Score=278.83  Aligned_cols=242  Identities=20%  Similarity=0.194  Sum_probs=177.2

Q ss_pred             ccccceeeecccCCCCCeeeccchhhhHHHHhHhhhccccccccCCceeeeceeeee----cCceeEEEeecCCCCHHHH
Q 044568            4 TKLSNFYRSSFNARNSPWISRVSWTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL----TSVSGKIERPVRNGSLTDI   79 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~----~~~~~lV~E~~~~gsL~~~   79 (257)
                      +.++.||+++. ++..+++|............-...- ....+.|+|++++.+.+..    .+..++||||+++|+|.++
T Consensus        19 G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~e~~~~-~~~~l~h~niv~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~   96 (301)
T 3q4u_A           19 GRYGEVWRGSW-QGENVAVKIFSSRDEKSWFRETELY-NTVMLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDY   96 (301)
T ss_dssp             CSSEEEEEEEE-TTEEEEEEEECGGGHHHHHHHHHHH-HHTCCCCTTBCCEEEEEEEEETTEEEEEEEECCCTTCBHHHH
T ss_pred             CCCcEEEEEEE-CCEEEEEEEeccccchhhHHHHHHH-HHhhccCcCeeeEEEeeccccCCCceeEEehhhccCCCHHHH
Confidence            57899999987 6778889876543222211100000 1123789999999988654    3468899999999999999


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHh--------hCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc---
Q 044568           80 IFCSAERNPYWNQRVRIALDVAKGILYLH--------DECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF---  148 (257)
Q Consensus        80 l~~~~~~~l~~~~~~~~~~~i~~~l~~lh--------~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~---  148 (257)
                      +.   ...+++..+..++.|++.||.|||        ++   +++||||||+||+++.++.+||+|||++.......   
T Consensus        97 l~---~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~  170 (301)
T 3q4u_A           97 LQ---LTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKP---AIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQL  170 (301)
T ss_dssp             HT---TCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBC---EEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEE
T ss_pred             Hh---hcccCHHHHHHHHHHHHHHHHHHHHhhhhccCCC---CeecCCCChHhEEEcCCCCEEEeeCCCeeecccccccc
Confidence            94   457999999999999999999999        88   99999999999999999999999999986432221   


Q ss_pred             ----ccccCCCCccCcccccCC------CCCccccchhHHHHHHHHHhc----------CCCCCcCCCChhhH-HHHHHH
Q 044568          149 ----VIDKRDKGYMAPECYKRT------PISVKADVYGYGIVLLETICC----------RKNMEIDASKPEEI-ILTNWV  207 (257)
Q Consensus       149 ----~~~~~~~~~~aPE~~~~~------~~~~~~Di~s~G~~l~el~~g----------~~pf~~~~~~~~~~-~~~~~~  207 (257)
                          ....+|+.|+|||.+.+.      .++.++||||||+++|||++|          ..||.......... ......
T Consensus       171 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~~~~~~~~~~~  250 (301)
T 3q4u_A          171 DVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVV  250 (301)
T ss_dssp             ECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHH
T ss_pred             cccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCCCCcchhhhhHHH
Confidence                233788999999999876      445799999999999999999          88886543222111 111000


Q ss_pred             HHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          208 YKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                          ..............+...+..+.+++.+||+.||++|| +.|+++.|
T Consensus       251 ----~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L  297 (301)
T 3q4u_A          251 ----CVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTL  297 (301)
T ss_dssp             ----TTSCCCCCCCGGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHH
T ss_pred             ----hccCCCCCCChhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHH
Confidence                00000001111122345678999999999999999999 99999865

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=1.2e-39  Score=283.60  Aligned_cols=228  Identities=18%  Similarity=0.221  Sum_probs=179.2

Q ss_pred             ccccceeeecccC--------CCCCeeeccc----------hhhhHHHHhHhhhccccccc-cCCceeeeceeeeecCce
Q 044568            4 TKLSNFYRSSFNA--------RNSPWISRVS----------WTADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVS   64 (257)
Q Consensus         4 ~~~~~~y~~~~~~--------~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~   64 (257)
                      +.++.||+++...        +..+++|...          +.+|++.+.         ++ .|+||+++.+.+...+..
T Consensus        92 G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~---------~l~~hpnIv~~~~~~~~~~~~  162 (370)
T 2psq_A           92 GCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMK---------MIGKHKNIINLLGACTQDGPL  162 (370)
T ss_dssp             CSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHH---------HSCCCTTBCCEEEEECSSSSC
T ss_pred             CCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHH---------HhcCCCCEeeEEEEEccCCCE
Confidence            5689999998532        2336777654          233444444         66 799999999999999999


Q ss_pred             eEEEeecCCCCHHHHHhccC--------------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCC
Q 044568           65 GKIERPVRNGSLTDIIFCSA--------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF  130 (257)
Q Consensus        65 ~lV~E~~~~gsL~~~l~~~~--------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~  130 (257)
                      ++||||+++|+|.+++....              ...+++.++..++.|++.||.|||++   +|+||||||+||+++.+
T Consensus       163 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~  239 (370)
T 2psq_A          163 YVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTEN  239 (370)
T ss_dssp             EEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTT
T ss_pred             EEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeccccchhhEEECCC
Confidence            99999999999999997532              24589999999999999999999999   99999999999999999


Q ss_pred             CceEEeeecccccCCCC-----cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHH
Q 044568          131 WTAKILDFGLAKLPNED-----FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILT  204 (257)
Q Consensus       131 ~~~kl~dfg~~~~~~~~-----~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~  204 (257)
                      +.+||+|||+++.....     .....+++.|+|||.+.+..++.++||||||+++|||++ |..||.......   ...
T Consensus       240 ~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~~~---~~~  316 (370)
T 2psq_A          240 NVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE---LFK  316 (370)
T ss_dssp             CCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG---HHH
T ss_pred             CCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCHHH---HHH
Confidence            99999999998754322     123345677999999999999999999999999999999 999997542111   000


Q ss_pred             HHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          205 NWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      .          +... .....+...+..+.+++.+||+.||.+|| +.|+++.|
T Consensus       317 ~----------~~~~-~~~~~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L  359 (370)
T 2psq_A          317 L----------LKEG-HRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDL  359 (370)
T ss_dssp             H----------HHTT-CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             H----------HhcC-CCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            0          0000 01123445667899999999999999999 99998864

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=100.00  E-value=4.1e-39  Score=275.79  Aligned_cols=233  Identities=13%  Similarity=0.088  Sum_probs=183.2

Q ss_pred             cccccceeeecc-cCCCCCeeeccc-------hhhhHHHHhHhhhccccccc-cCCceeeeceeeeecCceeEEEeecCC
Q 044568            3 CTKLSNFYRSSF-NARNSPWISRVS-------WTADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVSGKIERPVRN   73 (257)
Q Consensus         3 ~~~~~~~y~~~~-~~~~~~~i~~~~-------~~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~~lV~E~~~~   73 (257)
                      .+.++.||+++. .+++.+++|...       +.+|++.+.         ++ .|+|++++.+.+...+..++||||+ +
T Consensus        19 ~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~---------~l~~h~~i~~~~~~~~~~~~~~lv~e~~-~   88 (330)
T 2izr_A           19 CGNFGELRLGKNLYTNEYVAIKLEPMKSRAPQLHLEYRFYK---------QLGSGDGIPQVYYFGPCGKYNAMVLELL-G   88 (330)
T ss_dssp             C-CTTSEEEEEETTTTEEEEEEEEETTCSSCCHHHHHHHHH---------HHCSCTTSCCEEEEEEETTEEEEEEECC-C
T ss_pred             ccCCceEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHH---------HhhCCCCCCEEEEEEecCCccEEEEEeC-C
Confidence            367899999995 556667787543       456666666         66 7999999999999999999999999 8


Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCc-----eEEeeecccccCCCC-
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT-----AKILDFGLAKLPNED-  147 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~-----~kl~dfg~~~~~~~~-  147 (257)
                      ++|.+++.. ....+++.++..++.|++.||.|||++   +++||||||+||+++.++.     +||+|||++...... 
T Consensus        89 ~~L~~~~~~-~~~~~~~~~~~~i~~qi~~~l~~LH~~---~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~~~  164 (330)
T 2izr_A           89 PSLEDLFDL-CDRTFSLKTVLMIAIQLISRMEYVHSK---NLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYIDPE  164 (330)
T ss_dssp             CBHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBCTT
T ss_pred             CCHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeeeccCCCCCCceEEEEEcccceeeecCC
Confidence            999999975 467899999999999999999999999   9999999999999998877     999999998753322 


Q ss_pred             ---------cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhh
Q 044568          148 ---------FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNK  218 (257)
Q Consensus       148 ---------~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (257)
                               .....||+.|+|||.+.+..++.++||||||+++|||++|..||..............+....... ....
T Consensus       165 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~-~~~~  243 (330)
T 2izr_A          165 TKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRAT-PIEV  243 (330)
T ss_dssp             TCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHHHHHHHHHHHHS-CHHH
T ss_pred             CCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHHHHHHHHHhhhccC-CHHH
Confidence                     135578899999999999999999999999999999999999998754333222222211110000 0000


Q ss_pred             hhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          219 LVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       219 ~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      +      ....+ .+.+++..||+.||.+|| +++|.+.|
T Consensus       244 ~------~~~~p-~~~~li~~~l~~~p~~RP~~~~l~~~l  276 (330)
T 2izr_A          244 L------CENFP-EMATYLRYVRRLDFFEKPDYDYLRKLF  276 (330)
T ss_dssp             H------TTTCH-HHHHHHHHHHHCCTTCCCCHHHHHHHH
T ss_pred             H------hccCh-HHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence            0      11123 799999999999999999 99998754

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=100.00  E-value=4.4e-40  Score=293.67  Aligned_cols=227  Identities=19%  Similarity=0.327  Sum_probs=182.5

Q ss_pred             ccccceeeecccCCCCCeeeccc--------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS--------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGS   75 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gs   75 (257)
                      +.++.||+|+...+..+++|...        +.+|++++.         ++.|+||+++.+.+. .+..++||||+++|+
T Consensus       199 G~fg~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~l~~~~~-~~~~~lv~e~~~~g~  268 (454)
T 1qcf_A          199 GQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMK---------TLQHDKLVKLHAVVT-KEPIYIITEFMAKGS  268 (454)
T ss_dssp             CSSEEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHT---------TCCCTTBCCEEEEEC-SSSCEEEECCCTTCB
T ss_pred             CCceEEEEEEECCccEEEEEEecCCCccHHHHHHHHHHHh---------hCCCCCEeeEEEEEe-CCccEEEEeecCCCc
Confidence            57899999999888888988755        345555555         888999999998876 677899999999999


Q ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc----ccc
Q 044568           76 LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF----VID  151 (257)
Q Consensus        76 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~----~~~  151 (257)
                      |.+++.......+++.++..++.|++.||.|||++   +++||||||+|||++.++.+||+|||+++......    ...
T Consensus       269 L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~~~~~~~  345 (454)
T 1qcf_A          269 LLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGA  345 (454)
T ss_dssp             HHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHHHHTTCSS
T ss_pred             HHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCceeccCCC
Confidence            99999753345689999999999999999999999   99999999999999999999999999998654322    222


Q ss_pred             cCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHH
Q 044568          152 KRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNL  230 (257)
Q Consensus       152 ~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (257)
                      .++..|+|||.+....++.++||||||+++|||++ |+.||......   .....          +.... ....+..++
T Consensus       346 ~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~---~~~~~----------i~~~~-~~~~~~~~~  411 (454)
T 1qcf_A          346 KFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNP---EVIRA----------LERGY-RMPRPENCP  411 (454)
T ss_dssp             SSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH---HHHHH----------HHHTC-CCCCCTTSC
T ss_pred             cccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHH---HHHHH----------HHcCC-CCCCCCCCC
Confidence            34567999999998889999999999999999999 99999754211   11110          00000 112344566


Q ss_pred             HHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          231 ENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       231 ~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      +.+.+++.+||+.||++|| +++|++.|
T Consensus       412 ~~l~~li~~cl~~dp~~RPt~~~i~~~L  439 (454)
T 1qcf_A          412 EELYNIMMRCWKNRPEERPTFEYIQSVL  439 (454)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             HHHHHHHHHHccCChhHCcCHHHHHHHH
Confidence            7899999999999999999 99998764

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=100.00  E-value=4.9e-39  Score=269.72  Aligned_cols=228  Identities=18%  Similarity=0.273  Sum_probs=181.0

Q ss_pred             ccccceeeeccc-CCCCCeeeccc----------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeE
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS----------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGK   66 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~----------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~l   66 (257)
                      +.++.||+++.. ++..+++|...                +.+|++.+.         ++.|+|++++.+.+....  ++
T Consensus        30 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~i~~~~~~~~~~~--~l   98 (287)
T 4f0f_A           30 GGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMS---------NLNHPNIVKLYGLMHNPP--RM   98 (287)
T ss_dssp             CSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHT---------TCCCTTBCCEEEEETTTT--EE
T ss_pred             CCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHH---------hCCCCCchhhheeecCCC--eE
Confidence            578999999975 55667788652                334444444         778999999998875544  79


Q ss_pred             EEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCC--eeeccCCCCceeeCCCCc-----eEEeeec
Q 044568           67 IERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPP--ILHCDIKPQNILMDEFWT-----AKILDFG  139 (257)
Q Consensus        67 V~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~--i~h~dl~~~nil~~~~~~-----~kl~dfg  139 (257)
                      ||||+++|+|.+.+.. ....+++..+..++.|++.||.|||++   +  ++|+||||+||+++.++.     +||+|||
T Consensus        99 v~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~~~l~~~l~~lH~~---~~~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg  174 (287)
T 4f0f_A           99 VMEFVPCGDLYHRLLD-KAHPIKWSVKLRLMLDIALGIEYMQNQ---NPPIVHRDLRSPNIFLQSLDENAPVCAKVADFG  174 (287)
T ss_dssp             EEECCTTCBHHHHHHC-TTSCCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCSCCSGGGEEESCCCTTCSCCEEECCCT
T ss_pred             EEEecCCCCHHHHHhc-ccCCccHHHHHHHHHHHHHHHHHHHhC---CCCeecCCCCcceEEEeccCCCCceeEEeCCCC
Confidence            9999999999999976 566799999999999999999999999   8  999999999999987766     9999999


Q ss_pred             ccccCCCCcccccCCCCccCccccc--CCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhh
Q 044568          140 LAKLPNEDFVIDKRDKGYMAPECYK--RTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELN  217 (257)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~aPE~~~--~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (257)
                      ++...........+|+.|+|||.+.  ...++.++||||+|+++|||++|+.||..........  ....         .
T Consensus       175 ~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~--~~~~---------~  243 (287)
T 4f0f_A          175 LSQQSVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKF--INMI---------R  243 (287)
T ss_dssp             TCBCCSSCEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHH--HHHH---------H
T ss_pred             ccccccccccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHH--HHHH---------h
Confidence            9987666666778899999999984  4457899999999999999999999997553322110  1000         0


Q ss_pred             hhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          218 KLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       218 ~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ........+...++.+.+++.+||+.||++|| ++|+++.|
T Consensus       244 ~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L  284 (287)
T 4f0f_A          244 EEGLRPTIPEDCPPRLRNVIELCWSGDPKKRPHFSYIVKEL  284 (287)
T ss_dssp             HSCCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             ccCCCCCCCcccCHHHHHHHHHHhcCChhhCcCHHHHHHHH
Confidence            00111133445667899999999999999999 99999864

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=100.00  E-value=9e-40  Score=271.60  Aligned_cols=227  Identities=15%  Similarity=0.249  Sum_probs=182.4

Q ss_pred             ccccceeeecccCCCCCeeeccc--------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS--------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGS   75 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gs   75 (257)
                      +.++.||+++...+..+++|...        +.+|++.+.         ++.|+||+++.+.+...+..++||||+++++
T Consensus        19 G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~---------~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   89 (268)
T 3sxs_A           19 GQFGVVKLGKWKGQYDVAVKMIKEGSMSEDEFFQEAQTMM---------KLSHPKLVKFYGVCSKEYPIYIVTEYISNGC   89 (268)
T ss_dssp             ETTEEEEEEEETTTEEEEEEEECBTTBCHHHHHHHHHHHH---------HCCCTTBCCEEEEECSSSSEEEEEECCTTCB
T ss_pred             CCCceEEEEEecCceeEEEEEeccCCCcHHHHHHHHHHHH---------hCCCCCEeeEEEEEccCCceEEEEEccCCCc
Confidence            57899999998888788887654        344555555         7789999999999999999999999999999


Q ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc----ccc
Q 044568           76 LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF----VID  151 (257)
Q Consensus        76 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~----~~~  151 (257)
                      |.+++.. ....+++.++..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||.+.......    ...
T Consensus        90 L~~~l~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~  165 (268)
T 3sxs_A           90 LLNYLRS-HGKGLEPSQLLEMCYDVCEGMAFLESH---QFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVSSVGT  165 (268)
T ss_dssp             HHHHHHH-HGGGCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCSGGGEEECTTCCEEECCTTCEEECCTTCEEECCSC
T ss_pred             HHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCcCcceEEECCCCCEEEccCccceecchhhhhcccCC
Confidence            9999975 445699999999999999999999999   99999999999999999999999999987544332    222


Q ss_pred             cCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHH
Q 044568          152 KRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNL  230 (257)
Q Consensus       152 ~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (257)
                      .+++.|+|||.+.+..++.++||||+|+++|||++ |..||.......   .....          .. ......+...+
T Consensus       166 ~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~---~~~~~----------~~-~~~~~~~~~~~  231 (268)
T 3sxs_A          166 KFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSE---VVLKV----------SQ-GHRLYRPHLAS  231 (268)
T ss_dssp             CCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHH---HHHHH----------HT-TCCCCCCTTSC
T ss_pred             CcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChHH---HHHHH----------Hc-CCCCCCCCcCh
Confidence            34456999999988889999999999999999999 999997542111   00000          00 00112233345


Q ss_pred             HHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          231 ENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       231 ~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      +.+.+++.+||+.||.+|| ++|+++.|
T Consensus       232 ~~l~~li~~~l~~~p~~Rps~~~ll~~L  259 (268)
T 3sxs_A          232 DTIYQIMYSCWHELPEKRPTFQQLLSSI  259 (268)
T ss_dssp             HHHHHHHHHTTCSSGGGSCCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            6789999999999999999 99998864

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=100.00  E-value=8.5e-39  Score=269.33  Aligned_cols=233  Identities=13%  Similarity=0.042  Sum_probs=181.9

Q ss_pred             ccccceeeecc-cCCCCCeeeccc-------hhhhHHHHhHhhhccccccc-cCCceeeeceeeeecCceeEEEeecCCC
Q 044568            4 TKLSNFYRSSF-NARNSPWISRVS-------WTADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVSGKIERPVRNG   74 (257)
Q Consensus         4 ~~~~~~y~~~~-~~~~~~~i~~~~-------~~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~~lV~E~~~~g   74 (257)
                      +.++.||++.. .++..+++|...       +.+|++.+.         .+ .|++++++.+.+......++||||+ ++
T Consensus        21 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~~~---------~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~~   90 (298)
T 1csn_A           21 GSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYK---------LLAGCTGIPNVYYFGQEGLHNVLVIDLL-GP   90 (298)
T ss_dssp             CSSCEEEEEEETTTTEEEEEEEEECCTTSCCHHHHHHHHH---------HTTTCTTCCCEEEEEEETTEEEEEEECC-CC
T ss_pred             cCCEEEEEEEECCCCcEEEEEEeccCCccHHHHHHHHHHH---------HHhcCCCCCeEEeecCCCceeEEEEEec-CC
Confidence            56899999995 566677777543       345555554         44 5889999999999999999999999 89


Q ss_pred             CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCc-----eEEeeecccccCCCC--
Q 044568           75 SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT-----AKILDFGLAKLPNED--  147 (257)
Q Consensus        75 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~-----~kl~dfg~~~~~~~~--  147 (257)
                      +|.+++.. ....+++.++..++.|++.||.|||++   +++||||||+||+++.++.     +||+|||++......  
T Consensus        91 ~L~~~l~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~~~  166 (298)
T 1csn_A           91 SLEDLLDL-CGRKFSVKTVAMAAKQMLARVQSIHEK---SLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVT  166 (298)
T ss_dssp             BHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTT
T ss_pred             CHHHHHHH-hccCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEeccCCCCCCCeEEEEECccccccccccc
Confidence            99999985 456799999999999999999999999   9999999999999987665     999999998754322  


Q ss_pred             --------cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhh
Q 044568          148 --------FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKL  219 (257)
Q Consensus       148 --------~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (257)
                              .....+|+.|+|||.+.+..++.++||||||+++|||++|+.||..................... ......
T Consensus       167 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~-~~~~~~  245 (298)
T 1csn_A          167 KQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQS-TPLREL  245 (298)
T ss_dssp             CCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHH-SCHHHH
T ss_pred             cccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhccC-ccHHHH
Confidence                    23446888999999999988999999999999999999999999875433322222221111100 001111


Q ss_pred             hcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          220 VRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       220 ~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                            ....++.+.+++.+||+.||++|| +++|++.|
T Consensus       246 ------~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l  278 (298)
T 1csn_A          246 ------CAGFPEEFYKYMHYARNLAFDATPDYDYLQGLF  278 (298)
T ss_dssp             ------TTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHH
T ss_pred             ------HhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHH
Confidence                  113456799999999999999999 99998764

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=100.00  E-value=7.9e-40  Score=295.01  Aligned_cols=228  Identities=18%  Similarity=0.206  Sum_probs=185.0

Q ss_pred             ccccceeeecccC-CCCCeeeccc--------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCC
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS--------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNG   74 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~g   74 (257)
                      +.++.||+|.... +..+++|...        +.+|++.+.         ++.|+||+++.+.+...+..+|||||+++|
T Consensus       231 G~fg~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~---------~l~hpniv~l~~~~~~~~~~~lv~E~~~~g  301 (495)
T 1opk_A          231 GQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMK---------EIKHPNLVQLLGVCTREPPFYIITEFMTYG  301 (495)
T ss_dssp             GTTSSEEEEEEGGGTEEEEEEECCSSSSCHHHHHHHHHHHH---------HCCCTTBCCEEEEECSSSSCEEEEECCTTC
T ss_pred             CCCeEEEEEEEcCCCeEEEEEEecCcccchHHHHHHHHHHH---------hcCCCCEeeEEEEEecCCcEEEEEEccCCC
Confidence            5789999999876 5667887654        345555555         788999999999999999999999999999


Q ss_pred             CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc----cc
Q 044568           75 SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF----VI  150 (257)
Q Consensus        75 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~----~~  150 (257)
                      +|.+++.......+++..+..++.|++.||.|||++   +|+||||||+|||++.++.+||+|||+++......    ..
T Consensus       302 ~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~  378 (495)
T 1opk_A          302 NLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAG  378 (495)
T ss_dssp             BHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCEEECCTTCEECCTTCCEECCTT
T ss_pred             CHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChhhEEECCCCcEEEeecccceeccCCceeecCC
Confidence            999999865567799999999999999999999999   99999999999999999999999999998654322    22


Q ss_pred             ccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHH
Q 044568          151 DKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKN  229 (257)
Q Consensus       151 ~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (257)
                      ..++..|+|||.+....++.++||||||+++|||++ |..||.......    ....         +.... ....+..+
T Consensus       379 ~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~----~~~~---------~~~~~-~~~~~~~~  444 (495)
T 1opk_A          379 AKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ----VYEL---------LEKDY-RMERPEGC  444 (495)
T ss_dssp             CCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG----HHHH---------HHTTC-CCCCCTTC
T ss_pred             CcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHH----HHHH---------HHcCC-CCCCCCCC
Confidence            234567999999998889999999999999999999 999997542111    1000         00000 11234456


Q ss_pred             HHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          230 LENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       230 ~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ++.+.+++.+||+.||++|| +.|+++.|
T Consensus       445 ~~~l~~li~~cl~~dP~~RPs~~el~~~L  473 (495)
T 1opk_A          445 PEKVYELMRACWQWNPSDRPSFAEIHQAF  473 (495)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHcCcChhHCcCHHHHHHHH
Confidence            67899999999999999999 99998764

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=100.00  E-value=1.2e-38  Score=271.49  Aligned_cols=239  Identities=16%  Similarity=0.158  Sum_probs=182.6

Q ss_pred             ccccceeeecccC-CCCCeeeccch----------hhhHHHHhHhhhccccccccCCceeeeceeeeecC--ceeEEEee
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTS--VSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~--~~~lV~E~   70 (257)
                      +.++.||+++... ++.+++|...-          .+|++.+.         ++.|+|++++.+.+...+  ..++||||
T Consensus        20 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~~~~~~~~~lv~e~   90 (319)
T 4euu_A           20 GATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLK---------KLNHKNIVKLFAIEEETTTRHKVLIMEF   90 (319)
T ss_dssp             CSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHH---------HCCCTTBCCEEEEEECTTTCCEEEEEEC
T ss_pred             CCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHH---------hcCCCCcceEEEEeecCCCceEEEEEeC
Confidence            5789999999765 56677876542          24444444         788999999999888765  77999999


Q ss_pred             cCCCCHHHHHhccC-CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceee----CCCCceEEeeecccccCC
Q 044568           71 VRNGSLTDIIFCSA-ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM----DEFWTAKILDFGLAKLPN  145 (257)
Q Consensus        71 ~~~gsL~~~l~~~~-~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~----~~~~~~kl~dfg~~~~~~  145 (257)
                      +++|+|.+++.... ...+++.++..++.|++.||.|||++   +++||||||+||++    +..+.+||+|||++....
T Consensus        91 ~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~~~  167 (319)
T 4euu_A           91 CPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELE  167 (319)
T ss_dssp             CTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEECTTSCEEEEECCCTTCEECC
T ss_pred             CCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEEeccCCCCceEEEccCCCceecC
Confidence            99999999997532 23499999999999999999999999   99999999999999    777889999999997644


Q ss_pred             CC--cccccCCCCccCccccc--------CCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhH-HHHHHHHHhhhhh
Q 044568          146 ED--FVIDKRDKGYMAPECYK--------RTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEI-ILTNWVYKCFINR  214 (257)
Q Consensus       146 ~~--~~~~~~~~~~~aPE~~~--------~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~-~~~~~~~~~~~~~  214 (257)
                      ..  .....+|+.|+|||.+.        +..++.++||||||+++|||++|+.||.......... ......... ...
T Consensus       168 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~-p~~  246 (319)
T 4euu_A          168 DDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGK-PSG  246 (319)
T ss_dssp             TTCCBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHHHHC-CTT
T ss_pred             CCCceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHhcCC-Ccc
Confidence            32  23456888999999986        4678899999999999999999999997543322211 111111100 000


Q ss_pred             hhh--------------hhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          215 ELN--------------KLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       215 ~~~--------------~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ...              .+......+......+.+++.+||+.||++|| ++|+++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~  302 (319)
T 4euu_A          247 AISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFA  302 (319)
T ss_dssp             CCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHH
T ss_pred             cchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhh
Confidence            000              01111245677888999999999999999999 999986

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=4.6e-39  Score=273.59  Aligned_cols=238  Identities=14%  Similarity=0.110  Sum_probs=180.9

Q ss_pred             ccccceeeecccCCCCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +.++.||+++..+++.+++|....           .+|++.+.         ++.|+||+++.+.+...+..++||||++
T Consensus        32 G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~---------~l~hp~iv~~~~~~~~~~~~~lv~e~~~  102 (311)
T 3niz_A           32 GTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLK---------ELHHPNIVSLIDVIHSERCLTLVFEFME  102 (311)
T ss_dssp             CSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHH---------HCCCTTBCCEEEEECCSSCEEEEEECCS
T ss_pred             CCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHH---------HcCCCCEeeeeeEEccCCEEEEEEcCCC
Confidence            578999999998888899987642           34444444         7889999999999999999999999998


Q ss_pred             CCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC---Ccc
Q 044568           73 NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE---DFV  149 (257)
Q Consensus        73 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~---~~~  149 (257)
                       |+|.+.+.. ....+++.++..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++.....   ...
T Consensus       103 -~~l~~~~~~-~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~  177 (311)
T 3niz_A          103 -KDLKKVLDE-NKTGLQDSQIKIYLYQLLRGVAHCHQH---RILHRDLKPQNLLINSDGALKLADFGLARAFGIPVRSYT  177 (311)
T ss_dssp             -EEHHHHHHT-CTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEETTSCCC---
T ss_pred             -CCHHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCchHhEEECCCCCEEEccCcCceecCCCccccc
Confidence             588888875 556799999999999999999999999   999999999999999999999999999876442   224


Q ss_pred             cccCCCCccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhh--hhhhh---hhh---
Q 044568          150 IDKRDKGYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFI--NRELN---KLV---  220 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~---  220 (257)
                      ...+|+.|+|||.+.+ ..++.++||||+|+++|||++|+.||...........+.........  .....   ...   
T Consensus       178 ~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  257 (311)
T 3niz_A          178 HEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFSILGTPNPREWPQVQELPLWKQRT  257 (311)
T ss_dssp             CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTHHHHHHHHHCCCCTTTSGGGTTSHHHHSCC
T ss_pred             CCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHCCCChHHhhhhhccchhhhcc
Confidence            4567889999999876 45899999999999999999999999866443322111111000000  00000   000   


Q ss_pred             ----cCC---CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          221 ----RGT---KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       221 ----~~~---~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                          ...   .......+++.+++.+||+.||++|| ++|+++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  300 (311)
T 3niz_A          258 FQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMN  300 (311)
T ss_dssp             CCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             cccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence                000   01112346788999999999999999 999986

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=100.00  E-value=3.4e-39  Score=278.08  Aligned_cols=244  Identities=11%  Similarity=0.048  Sum_probs=179.0

Q ss_pred             ccccceeeeccc----CCCCCeeeccch-----hhhHHHHhHhhh------ccccccccCCceeeeceeeee----cCce
Q 044568            4 TKLSNFYRSSFN----ARNSPWISRVSW-----TADIEVLSVAMR------GSKCTRIRGGLLLNVPVRAKL----TSVS   64 (257)
Q Consensus         4 ~~~~~~y~~~~~----~~~~~~i~~~~~-----~~~~~~~~~~~~------~~~~~~~~h~~i~~~~~~~~~----~~~~   64 (257)
                      +.++.||++...    .+..+++|....     .++.+++.....      -.....+.|+||+++.+.+..    ....
T Consensus        48 G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~~~~~~~~~~~~  127 (345)
T 2v62_A           48 GGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGSGLTEFKGRSYR  127 (345)
T ss_dssp             ----CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEEEEEESSSCEEE
T ss_pred             cCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecccccccCCCcEE
Confidence            578999999976    456667776442     233333331100      012346789999999999988    7789


Q ss_pred             eEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCC--ceEEeeecccc
Q 044568           65 GKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW--TAKILDFGLAK  142 (257)
Q Consensus        65 ~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~--~~kl~dfg~~~  142 (257)
                      ++||||+ +++|.+++..  ...+++.++..++.|++.||.|||++   +++||||||+||+++.++  .+||+|||+++
T Consensus       128 ~lv~e~~-~~~L~~~l~~--~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kL~Dfg~a~  201 (345)
T 2v62_A          128 FMVMERL-GIDLQKISGQ--NGTFKKSTVLQLGIRMLDVLEYIHEN---EYVHGDIKAANLLLGYKNPDQVYLADYGLSY  201 (345)
T ss_dssp             EEEEECE-EEEHHHHCBG--GGBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEESSSTTSEEECCCTTCE
T ss_pred             EEEEecc-CCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCcCHHHEEEccCCCCcEEEEeCCCce
Confidence            9999999 8999999974  33899999999999999999999999   999999999999998777  99999999987


Q ss_pred             cCCCC----------cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhh
Q 044568          143 LPNED----------FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFI  212 (257)
Q Consensus       143 ~~~~~----------~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~  212 (257)
                      .....          .....+|..|+|||.+.+..++.++||||||+++|||++|+.||.....................
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~  281 (345)
T 2v62_A          202 RYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAVQTAKTNLLDEL  281 (345)
T ss_dssp             ESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHHHHHHHHHHHHTT
T ss_pred             ecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHHHHHHHHhhcccc
Confidence            54321          13447888999999999988999999999999999999999999754333222111111111111


Q ss_pred             hhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          213 NRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      .........    ....++.+.+++.+||+.||++|| ++++++.|
T Consensus       282 ~~~~~~~~~----~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L  323 (345)
T 2v62_A          282 PQSVLKWAP----SGSSCCEIAQFLVCAHSLAYDEKPNYQALKKIL  323 (345)
T ss_dssp             THHHHHHSC----TTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHH
T ss_pred             cHHHHhhcc----ccccHHHHHHHHHHHhhcCcccCCCHHHHHHHH
Confidence            111111111    113456799999999999999999 99998864

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=100.00  E-value=2.4e-39  Score=271.10  Aligned_cols=227  Identities=17%  Similarity=0.218  Sum_probs=182.1

Q ss_pred             ccccceeeecccCCCCCeeeccc--------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS--------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGS   75 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gs   75 (257)
                      +.++.||+++...+..+++|...        +.+|++.+.         ++.|+||+++.+.+...+..++||||+++|+
T Consensus        35 G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~---------~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~  105 (283)
T 3gen_A           35 GQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMM---------NLSHEKLVQLYGVCTKQRPIFIITEYMANGC  105 (283)
T ss_dssp             --CEEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHH---------TCCCTTBCCEEEEECSSSSEEEEECCCTTCB
T ss_pred             CCCceEEEEEEcCCCeEEEEEecCCCCCHHHHHHHHHHHh---------cCCCCCEeeEEEEEecCCCeEEEEeccCCCc
Confidence            56889999999888888888754        345555555         7789999999999999999999999999999


Q ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc----ccc
Q 044568           76 LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF----VID  151 (257)
Q Consensus        76 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~----~~~  151 (257)
                      |.+++.. ....+++.++..++.|++.||.|||++   +++|+||||+||+++.++.++|+|||.+.......    ...
T Consensus       106 L~~~l~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~  181 (283)
T 3gen_A          106 LLNYLRE-MRHRFQTQQLLEMCKDVCEAMEYLESK---QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGS  181 (283)
T ss_dssp             HHHHHHC-GGGCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHHHHSTTST
T ss_pred             HHHHHHH-hccCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCccceEEEcCCCCEEEccccccccccccccccccCC
Confidence            9999975 356799999999999999999999999   99999999999999999999999999987543322    223


Q ss_pred             cCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHH
Q 044568          152 KRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNL  230 (257)
Q Consensus       152 ~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (257)
                      .+++.|+|||.+.+..++.++||||+|+++|||++ |+.||.......   ...          .+.... ....+...+
T Consensus       182 ~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~---~~~----------~~~~~~-~~~~~~~~~  247 (283)
T 3gen_A          182 KFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSE---TAE----------HIAQGL-RLYRPHLAS  247 (283)
T ss_dssp             TSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH---HHH----------HHHTTC-CCCCCTTCC
T ss_pred             ccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChhH---HHH----------HHhccc-CCCCCCcCC
Confidence            44567999999998889999999999999999998 999997542111   000          000100 112233345


Q ss_pred             HHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          231 ENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       231 ~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      +.+.+++.+||+.||.+|| ++|+++.|
T Consensus       248 ~~l~~li~~~l~~~p~~Rps~~~ll~~L  275 (283)
T 3gen_A          248 EKVYTIMYSCWHEKADERPTFKILLSNI  275 (283)
T ss_dssp             HHHHHHHHHTTCSSGGGSCCHHHHHHHH
T ss_pred             HHHHHHHHHHccCChhHCcCHHHHHHHH
Confidence            6789999999999999999 99998764

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=1.9e-38  Score=275.20  Aligned_cols=222  Identities=18%  Similarity=0.204  Sum_probs=179.6

Q ss_pred             ccccceeeecccC-CCCCeeeccc---------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEE
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS---------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~---------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV   67 (257)
                      +.++.||++.... +..+++|...               +.+|++.+.         ++.|+||+++.+.+...+..++|
T Consensus        23 G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~---------~l~hpnIv~l~~~~~~~~~~~lv   93 (361)
T 2yab_A           23 GQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILR---------QVLHPNIITLHDVYENRTDVVLI   93 (361)
T ss_dssp             ETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHT---------TCCCTTBCCEEEEEECSSEEEEE
T ss_pred             CcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHH---------hCCCcCCCcEEEEEEeCCEEEEE
Confidence            5789999999764 5556776543               234555555         78899999999999999999999


Q ss_pred             EeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCC----ceEEeeeccccc
Q 044568           68 ERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW----TAKILDFGLAKL  143 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~----~~kl~dfg~~~~  143 (257)
                      |||+++|+|.+++.  ....+++.++..++.|++.||.|||++   +++||||||+||+++.++    .+||+|||++..
T Consensus        94 ~e~~~gg~L~~~l~--~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~~~vkl~DFG~a~~  168 (361)
T 2yab_A           94 LELVSGGELFDFLA--QKESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHE  168 (361)
T ss_dssp             EECCCSCBHHHHHT--TCSCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCCEEECCCSSCEE
T ss_pred             EEcCCCCcHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEeCCCCCccCEEEEecCCceE
Confidence            99999999999997  456799999999999999999999999   999999999999998776    799999999876


Q ss_pred             CCCC--cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc
Q 044568          144 PNED--FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR  221 (257)
Q Consensus       144 ~~~~--~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (257)
                      ....  .....||+.|+|||.+.+..++.++||||+|+++|+|++|..||.....   .......             ..
T Consensus       169 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~---~~~~~~i-------------~~  232 (361)
T 2yab_A          169 IEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK---QETLANI-------------TA  232 (361)
T ss_dssp             CCTTCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH---HHHHHHH-------------HT
T ss_pred             cCCCCccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCH---HHHHHHH-------------Hh
Confidence            4432  3455789999999999988999999999999999999999999975521   1111111             11


Q ss_pred             CC-CCC----HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          222 GT-KVD----KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       222 ~~-~~~----~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .. .++    ....+.+.+++.+||+.||.+|| +.|+++
T Consensus       233 ~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~  272 (361)
T 2yab_A          233 VSYDFDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEALR  272 (361)
T ss_dssp             TCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             cCCCCCchhccCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence            10 111    12346788999999999999999 999975

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=100.00  E-value=9.4e-40  Score=291.43  Aligned_cols=227  Identities=22%  Similarity=0.297  Sum_probs=179.5

Q ss_pred             ccccceeeecccCCCCCeeeccc--------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS--------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGS   75 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gs   75 (257)
                      +.++.||+|+...+..+++|...        +.+|++.+.         +++|+||+++.+.+.. +..++||||+++|+
T Consensus       195 G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~---------~l~hp~iv~~~~~~~~-~~~~iv~e~~~~gs  264 (452)
T 1fmk_A          195 GCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMK---------KLRHEKLVQLYAVVSE-EPIYIVTEYMSKGS  264 (452)
T ss_dssp             CSSCEEEEEEETTTEEEEEEECCTTSSCHHHHHHHHHHHH---------HCCCTTBCCEEEEECS-SSCEEEECCCTTCB
T ss_pred             CCCeEEEEEEECCCceEEEEEeccCCCCHHHHHHHHHHHH---------hCCCCCEeeEEEEEcC-CceEEEehhhcCCC
Confidence            57899999999888788888754        345555555         8889999999998866 77899999999999


Q ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc----ccc
Q 044568           76 LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF----VID  151 (257)
Q Consensus        76 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~----~~~  151 (257)
                      |.+++.......+++.++..++.|++.||.|||++   +++||||||+||+++.++.+||+|||+++......    ...
T Consensus       265 L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~  341 (452)
T 1fmk_A          265 LLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGA  341 (452)
T ss_dssp             HHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCTTC-------------
T ss_pred             HHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEECCCCCEEECCCccceecCCCceecccCC
Confidence            99999753445699999999999999999999999   99999999999999999999999999987543221    223


Q ss_pred             cCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHH
Q 044568          152 KRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNL  230 (257)
Q Consensus       152 ~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (257)
                      .++..|+|||.+....++.++||||||+++|||++ |+.||......   .....          +... .....+..++
T Consensus       342 ~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~---~~~~~----------i~~~-~~~~~~~~~~  407 (452)
T 1fmk_A          342 KFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR---EVLDQ----------VERG-YRMPCPPECP  407 (452)
T ss_dssp             -CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHH---HHHHH----------HHTT-CCCCCCTTSC
T ss_pred             cccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHH---HHHHH----------HHcC-CCCCCCCCCC
Confidence            45567999999998899999999999999999999 99999754211   00100          0000 0113345567


Q ss_pred             HHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          231 ENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       231 ~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      +.+.+++.+||+.||++|| ++++++.|
T Consensus       408 ~~l~~li~~cl~~dP~~Rpt~~~l~~~L  435 (452)
T 1fmk_A          408 ESLHDLMCQCWRKEPEERPTFEYLQAFL  435 (452)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             HHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence            7899999999999999999 99998764

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=4.4e-39  Score=271.55  Aligned_cols=229  Identities=22%  Similarity=0.232  Sum_probs=174.8

Q ss_pred             ccccceeeeccc-CCCCCeeeccc------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||++... .+..+++|...            +.+|++.+.         ++.|+|++++.+.+...+..++||||
T Consensus        22 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~---------~l~hp~iv~~~~~~~~~~~~~lv~e~   92 (294)
T 4eqm_A           22 GGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSS---------QLSHQNIVSMIDVDEEDDCYYLVMEY   92 (294)
T ss_dssp             ETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHT---------TCCBTTBCCEEEEEECSSEEEEEEEC
T ss_pred             CCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHh---------cCCCCCCceEEEeeeeCCeEEEEEeC
Confidence            568899999854 45567777642            233443333         78899999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc--
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF--  148 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~--  148 (257)
                      +++|+|.+++..  ...+++.++..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++.......  
T Consensus        93 ~~g~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~  167 (294)
T 4eqm_A           93 IEGPTLSEYIES--HGPLSVDTAINFTNQILDGIKHAHDM---RIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLT  167 (294)
T ss_dssp             CCSCBHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCSSSTTC------
T ss_pred             CCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEEeCCCcccccccccc
Confidence            999999999973  45799999999999999999999999   99999999999999999999999999987544322  


Q ss_pred             --ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCC
Q 044568          149 --VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVD  226 (257)
Q Consensus       149 --~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (257)
                        ....+|+.|+|||.+.+..++.++||||+|+++|||++|+.||.......  ....     .... ......  ....
T Consensus       168 ~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~--~~~~-----~~~~-~~~~~~--~~~~  237 (294)
T 4eqm_A          168 QTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVS--IAIK-----HIQD-SVPNVT--TDVR  237 (294)
T ss_dssp             -------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHH--HHHH-----HHSS-CCCCHH--HHSC
T ss_pred             ccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHH--HHHH-----Hhhc-cCCCcc--hhcc
Confidence              33468899999999999889999999999999999999999997552111  0000     0000 000000  0122


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCC--hHHHHHh
Q 044568          227 KKNLENLVKVGLWCVQDEPALRP--MKCAVMM  256 (257)
Q Consensus       227 ~~~~~~l~~l~~~cl~~~p~~RP--~~ei~~~  256 (257)
                      ...++.+.+++.+||+.||.+||  ++++.+.
T Consensus       238 ~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~  269 (294)
T 4eqm_A          238 KDIPQSLSNVILRATEKDKANRYKTIQEMKDD  269 (294)
T ss_dssp             TTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHH
T ss_pred             cCCCHHHHHHHHHHhcCCHhHccccHHHHHHH
Confidence            33457899999999999999999  6666554

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=100.00  E-value=4.2e-40  Score=277.39  Aligned_cols=236  Identities=18%  Similarity=0.243  Sum_probs=177.5

Q ss_pred             ccccceeeecc-----cCCCCCeeeccc---------hhhhHHHHhHhhhccccccccCCceeeeceeeeec--CceeEE
Q 044568            4 TKLSNFYRSSF-----NARNSPWISRVS---------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT--SVSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~-----~~~~~~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~--~~~~lV   67 (257)
                      +.++.||++++     .++..+++|...         +.+|++.+.         ++.|+|++++.+.+...  ...++|
T Consensus        21 G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~~~~~~~~~lv   91 (295)
T 3ugc_A           21 GNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILK---------SLQHDNIVKYKGVCYSAGRRNLKLI   91 (295)
T ss_dssp             CSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHH---------TCCCTTBCCEEEEECHHHHTSCEEE
T ss_pred             cCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHH---------hCCCCCEeeEEEEEecCCCCceEEE
Confidence            57899999974     355667787654         234555554         78899999999988653  568999


Q ss_pred             EeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC
Q 044568           68 ERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED  147 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~  147 (257)
                      |||+++|+|.+++.. ....+++.++..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++......
T Consensus        92 ~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~~~~  167 (295)
T 3ugc_A           92 MEYLPYGSLRDYLQK-HKERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDFGLTKVLPQD  167 (295)
T ss_dssp             EECCTTCBHHHHHHH-CGGGCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCCSCC-----
T ss_pred             EEeCCCCCHHHHHHh-cccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHhhEEEcCCCeEEEccCcccccccCC
Confidence            999999999999975 455699999999999999999999999   9999999999999999999999999998754332


Q ss_pred             c------ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHH----hhhhhhh-
Q 044568          148 F------VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYK----CFINREL-  216 (257)
Q Consensus       148 ~------~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~----~~~~~~~-  216 (257)
                      .      ....++..|+|||.+.+..++.++||||||+++|||++|..||......     .......    ....... 
T Consensus       168 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~  242 (295)
T 3ugc_A          168 KEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAE-----FMRMIGNDKQGQMIVFHLI  242 (295)
T ss_dssp             --------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHH-----HHHHHCTTCCTHHHHHHHH
T ss_pred             cceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHH-----HHhhhcCccccchhHHHHH
Confidence            1      2234555699999999889999999999999999999999998643110     0000000    0000011 


Q ss_pred             hhhhcC--CCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          217 NKLVRG--TKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       217 ~~~~~~--~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ..+...  ...+...++.+.+++.+||+.||++|| ++|+++.|
T Consensus       243 ~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L  286 (295)
T 3ugc_A          243 ELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRV  286 (295)
T ss_dssp             HHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHH
T ss_pred             HHHhccCcCCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHH
Confidence            111111  134556678899999999999999999 99998764

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=1.2e-38  Score=274.03  Aligned_cols=223  Identities=17%  Similarity=0.167  Sum_probs=178.8

Q ss_pred             ccccceeeeccc-CCCCCeeeccch------------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||+++.. +++.+++|...-            .+|.+.+         ..+.|+|++++.+.+...+..++||||
T Consensus        16 G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l---------~~l~hp~iv~l~~~~~~~~~~~lv~E~   86 (337)
T 1o6l_A           16 GTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVL---------QNTRHPFLTALKYAFQTHDRLCFVMEY   86 (337)
T ss_dssp             CSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHH---------HSCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHH---------HhCCCCcCcceEEEEEeCCEEEEEEeC
Confidence            578999999865 466678876542            2223333         378899999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC---CC
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN---ED  147 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~---~~  147 (257)
                      +++|+|.+++.  ....+++..+..++.|++.||.|||++   +|+||||||+||+++.++.+||+|||+++...   ..
T Consensus        87 ~~gg~L~~~l~--~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~  161 (337)
T 1o6l_A           87 ANGGELFFHLS--RERVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGAT  161 (337)
T ss_dssp             CTTCBHHHHHH--HHSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTCC
T ss_pred             CCCCcHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCCHHHEEECCCCCEEEeeccchhhcccCCCc
Confidence            99999999997  346799999999999999999999999   99999999999999999999999999987532   22


Q ss_pred             cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCH
Q 044568          148 FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDK  227 (257)
Q Consensus       148 ~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (257)
                      .....||+.|+|||.+.+..++.++|+||||+++|||++|..||.....   .......            ......++.
T Consensus       162 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~---~~~~~~i------------~~~~~~~p~  226 (337)
T 1o6l_A          162 MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH---ERLFELI------------LMEEIRFPR  226 (337)
T ss_dssp             BCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHH------------HHCCCCCCT
T ss_pred             ccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCH---HHHHHHH------------HcCCCCCCC
Confidence            3455789999999999998999999999999999999999999975421   1111100            001123344


Q ss_pred             HHHHHHHHHHHHcccCCCCCCC------hHHHHH
Q 044568          228 KNLENLVKVGLWCVQDEPALRP------MKCAVM  255 (257)
Q Consensus       228 ~~~~~l~~l~~~cl~~~p~~RP------~~ei~~  255 (257)
                      ...+.+.+++.+||+.||++||      ++|+++
T Consensus       227 ~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~  260 (337)
T 1o6l_A          227 TLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME  260 (337)
T ss_dssp             TSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred             CCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHc
Confidence            5567899999999999999996      556543

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=4.4e-39  Score=275.19  Aligned_cols=226  Identities=20%  Similarity=0.179  Sum_probs=180.4

Q ss_pred             ccccceeeeccc-CCCCCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +.++.||++... +++.+++|...          +.+|++.+.         .+.|+||+++.+.+...+..++||||++
T Consensus        18 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~---------~l~hpnIv~~~~~~~~~~~~~lv~e~~~   88 (323)
T 3tki_A           18 GAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINK---------MLNHENVVKFYGHRREGNIQYLFLEYCS   88 (323)
T ss_dssp             ETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHH---------HCCCTTBCCEEEEEECSSEEEEEEECCT
T ss_pred             CCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHH---------hCCCCCCCeEEEEEecCCeEEEEEEcCC
Confidence            578999999866 56667777643          344555555         7789999999999999999999999999


Q ss_pred             CCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC-----
Q 044568           73 NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED-----  147 (257)
Q Consensus        73 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~-----  147 (257)
                      +|+|.+++.  ....+++.++..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++......     
T Consensus        89 ~~~L~~~l~--~~~~~~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~  163 (323)
T 3tki_A           89 GGELFDRIE--PDIGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERL  163 (323)
T ss_dssp             TEEGGGGSB--TTTBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECC
T ss_pred             CCcHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccccchHHEEEeCCCCEEEEEeeccceeccCCcccc
Confidence            999999997  556799999999999999999999999   9999999999999999999999999998753211     


Q ss_pred             cccccCCCCccCcccccCCCC-CccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCC
Q 044568          148 FVIDKRDKGYMAPECYKRTPI-SVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVD  226 (257)
Q Consensus       148 ~~~~~~~~~~~aPE~~~~~~~-~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (257)
                      .....+|+.|+|||.+.+..+ +.++||||||+++|||++|+.||........  ....+....          ......
T Consensus       164 ~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~--~~~~~~~~~----------~~~~~~  231 (323)
T 3tki_A          164 LNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQ--EYSDWKEKK----------TYLNPW  231 (323)
T ss_dssp             BCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSH--HHHHHHTTC----------TTSTTG
T ss_pred             cCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHH--HHHHHhccc----------ccCCcc
Confidence            234578889999999987765 7889999999999999999999976533221  111111100          000112


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          227 KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       227 ~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ......+.+++.+||+.||++|| ++|+++
T Consensus       232 ~~~~~~~~~li~~~L~~dP~~R~t~~eil~  261 (323)
T 3tki_A          232 KKIDSAPLALLHKILVENPSARITIPDIKK  261 (323)
T ss_dssp             GGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             ccCCHHHHHHHHHHccCChhhCcCHHHHhh
Confidence            33456788999999999999999 999975

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=8.1e-39  Score=276.52  Aligned_cols=225  Identities=15%  Similarity=0.083  Sum_probs=178.9

Q ss_pred             ccccceeeeccc-CCCCCeeeccchhhhHH---HHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHH
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSWTADIE---VLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDI   79 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~   79 (257)
                      +.++.||+++.. +++.+++|...-....+   .-........+..+.|+||+++.+.+...+..++||||+++|+|.++
T Consensus        52 G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~gg~L~~~  131 (350)
T 1rdq_E           52 GSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSH  131 (350)
T ss_dssp             CSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHH
T ss_pred             CcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEEcCCCCCcHHHH
Confidence            568999999976 56667888654221110   00000011123377899999999999999999999999999999999


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcccccCCCCccC
Q 044568           80 IFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA  159 (257)
Q Consensus        80 l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~a  159 (257)
                      +..  ...+++..+..++.|++.||.|||++   +|+||||||+||+++.++.+||+|||++...........||+.|+|
T Consensus       132 l~~--~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~~~~~~gt~~y~a  206 (350)
T 1rdq_E          132 LRR--IGRFSEPHARFYAAQIVLTFEYLHSL---DLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEALA  206 (350)
T ss_dssp             HHH--HCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECSSCBCCCEECGGGCC
T ss_pred             HHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCccceEEECCCCCEEEcccccceeccCCcccccCCccccC
Confidence            974  45699999999999999999999999   9999999999999999999999999999876666666788999999


Q ss_pred             cccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc-CCCCCHHHHHHHHHHHH
Q 044568          160 PECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR-GTKVDKKNLENLVKVGL  238 (257)
Q Consensus       160 PE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~  238 (257)
                      ||.+.+..++.++|+||||+++|||++|..||.....   .....             .+.. ...++......+.+++.
T Consensus       207 PE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~---~~~~~-------------~i~~~~~~~p~~~~~~~~~li~  270 (350)
T 1rdq_E          207 PEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQP---IQIYE-------------KIVSGKVRFPSHFSSDLKDLLR  270 (350)
T ss_dssp             HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHH-------------HHHHCCCCCCTTCCHHHHHHHH
T ss_pred             HHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCH---HHHHH-------------HHHcCCCCCCCCCCHHHHHHHH
Confidence            9999998999999999999999999999999975421   11111             1111 11334455678999999


Q ss_pred             HcccCCCCCCC
Q 044568          239 WCVQDEPALRP  249 (257)
Q Consensus       239 ~cl~~~p~~RP  249 (257)
                      +||+.||.+||
T Consensus       271 ~lL~~dp~~R~  281 (350)
T 1rdq_E          271 NLLQVDLTKRF  281 (350)
T ss_dssp             HHSCSCTTTCT
T ss_pred             HHhhcCHHhcc
Confidence            99999999998

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=1.4e-38  Score=271.64  Aligned_cols=225  Identities=16%  Similarity=0.129  Sum_probs=178.2

Q ss_pred             ccccceeeeccc-CCCCCeeeccchhhhHH---HHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHH
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSWTADIE---VLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDI   79 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~   79 (257)
                      +.++.||+++.. ++..+++|...-....+   .-........+..+.|+||+++.+.+...+..++||||+++|+|.++
T Consensus        17 G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~e~~~gg~L~~~   96 (318)
T 1fot_A           17 GSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSL   96 (318)
T ss_dssp             CSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEECCCCSCBHHHH
T ss_pred             CCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEEEeCCCCCCHHHH
Confidence            578999999876 45667777654211100   00000011123377899999999999999999999999999999999


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcccccCCCCccC
Q 044568           80 IFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMA  159 (257)
Q Consensus        80 l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~a  159 (257)
                      +.  ....+++..+..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++...........||+.|+|
T Consensus        97 l~--~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~~~~~~gt~~y~a  171 (318)
T 1fot_A           97 LR--KSQRFPNPVAKFYAAEVCLALEYLHSK---DIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLCGTPDYIA  171 (318)
T ss_dssp             HH--HTSSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTSCEEECCCSSCEECSSCBCCCCSCTTTCC
T ss_pred             HH--HcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChheEEEcCCCCEEEeecCcceecCCccccccCCccccC
Confidence            98  446799999999999999999999999   9999999999999999999999999999876666666789999999


Q ss_pred             cccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcC-CCCCHHHHHHHHHHHH
Q 044568          160 PECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRG-TKVDKKNLENLVKVGL  238 (257)
Q Consensus       160 PE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~  238 (257)
                      ||.+.+..++.++|+||+|+++|||++|..||.....   ....             ...... ..++......+.+++.
T Consensus       172 PE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~---~~~~-------------~~i~~~~~~~p~~~~~~~~~li~  235 (318)
T 1fot_A          172 PEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNT---MKTY-------------EKILNAELRFPPFFNEDVKDLLS  235 (318)
T ss_dssp             HHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSH---HHHH-------------HHHHHCCCCCCTTSCHHHHHHHH
T ss_pred             HhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCH---HHHH-------------HHHHhCCCCCCCCCCHHHHHHHH
Confidence            9999998999999999999999999999999975421   1111             111111 1234445577899999


Q ss_pred             HcccCCCCCCC
Q 044568          239 WCVQDEPALRP  249 (257)
Q Consensus       239 ~cl~~~p~~RP  249 (257)
                      +||+.||++||
T Consensus       236 ~lL~~dp~~R~  246 (318)
T 1fot_A          236 RLITRDLSQRL  246 (318)
T ss_dssp             HHTCSCTTTCT
T ss_pred             HHhccCHHHcC
Confidence            99999999998

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=8.6e-39  Score=273.21  Aligned_cols=224  Identities=18%  Similarity=0.165  Sum_probs=179.5

Q ss_pred             ccccceeeecccCC-CCCeeeccc--------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCC
Q 044568            4 TKLSNFYRSSFNAR-NSPWISRVS--------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNG   74 (257)
Q Consensus         4 ~~~~~~y~~~~~~~-~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~g   74 (257)
                      +.++.||+++...+ ..+++|...        +.+|++.+.         .+.|+||+++.+.+...+..++||||+++|
T Consensus        16 G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~---------~l~hpnIv~~~~~~~~~~~~~lv~e~~~g~   86 (321)
T 1tki_A           16 GEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILN---------IARHRNILHLHESFESMEELVMIFEFISGL   86 (321)
T ss_dssp             CSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHH---------HSCCTTBCCEEEEEEETTEEEEEECCCCCC
T ss_pred             CCCeEEEEEEECCCCcEEEEEEEecCcccHHHHHHHHHHHH---------hCCCCCCCeEeEEEecCCEEEEEEEeCCCC
Confidence            57899999997654 455666543        234555444         778999999999999999999999999999


Q ss_pred             CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCC--CCceEEeeecccccCCCC--ccc
Q 044568           75 SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE--FWTAKILDFGLAKLPNED--FVI  150 (257)
Q Consensus        75 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~--~~~~kl~dfg~~~~~~~~--~~~  150 (257)
                      +|.+++.. ....+++.++..++.|++.||.|||++   +++||||||+||+++.  ++.+||+|||++......  ...
T Consensus        87 ~L~~~l~~-~~~~~~~~~~~~i~~qi~~al~~lH~~---givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~  162 (321)
T 1tki_A           87 DIFERINT-SAFELNEREIVSYVHQVCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRL  162 (321)
T ss_dssp             BHHHHHTS-SSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCEEEE
T ss_pred             CHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCCcccc
Confidence            99999975 445799999999999999999999999   9999999999999987  789999999998765332  245


Q ss_pred             ccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCC----
Q 044568          151 DKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVD----  226 (257)
Q Consensus       151 ~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  226 (257)
                      ..+|+.|+|||.+.+..++.++||||+|+++|+|++|..||.....   ...........            ..++    
T Consensus       163 ~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~---~~~~~~i~~~~------------~~~~~~~~  227 (321)
T 1tki_A          163 LFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETN---QQIIENIMNAE------------YTFDEEAF  227 (321)
T ss_dssp             EESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSH---HHHHHHHHHTC------------CCCCHHHH
T ss_pred             ccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCH---HHHHHHHHcCC------------CCCChhhh
Confidence            5788999999999988889999999999999999999999975421   11111111000            0111    


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          227 KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       227 ~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ...+..+.+++.+||+.||.+|| +.|+++
T Consensus       228 ~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~  257 (321)
T 1tki_A          228 KEISIEAMDFVDRLLVKERKSRMTASEALQ  257 (321)
T ss_dssp             TTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             ccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            12346789999999999999999 999986

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=100.00  E-value=2.7e-39  Score=276.51  Aligned_cols=227  Identities=16%  Similarity=0.174  Sum_probs=176.5

Q ss_pred             cccccceeeecccCCCC-----Ceeecc----------chhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEE
Q 044568            3 CTKLSNFYRSSFNARNS-----PWISRV----------SWTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKI   67 (257)
Q Consensus         3 ~~~~~~~y~~~~~~~~~-----~~i~~~----------~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV   67 (257)
                      .+.++.||++....++.     +++|..          .+.++++.+.         ++.|+||+++.+++. .+..++|
T Consensus        23 ~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~---------~l~h~~iv~~~~~~~-~~~~~~v   92 (325)
T 3kex_A           23 SGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIG---------SLDHAHIVRLLGLCP-GSSLQLV   92 (325)
T ss_dssp             CCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHH---------TCCCTTBCCEEEEEC-BSSEEEE
T ss_pred             ecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHh---------cCCCCCcCeEEEEEc-CCccEEE
Confidence            36789999999765544     344432          2345555555         778999999999876 5678899


Q ss_pred             EeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC
Q 044568           68 ERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED  147 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~  147 (257)
                      |||+++|+|.+++.. ....+++..+..++.|++.||.|||++   +++||||||+||+++.++.+||+|||+++.....
T Consensus        93 ~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~  168 (325)
T 3kex_A           93 TQYLPLGSLLDHVRQ-HRGALGPQLLLNWGVQIAKGMYYLEEH---GMVHRNLAARNVLLKSPSQVQVADFGVADLLPPD  168 (325)
T ss_dssp             EECCTTCBSHHHHHS-SGGGSCTTHHHHHHHHHHHHHHHHHHT---TCCCSCCSSTTEEESSSSCEEECSCSGGGGSCCC
T ss_pred             EEeCCCCCHHHHHHH-ccccCCHHHHHHHHHHHHHHHHHHHhC---CCCCCccchheEEECCCCeEEECCCCcccccCcc
Confidence            999999999999975 456789999999999999999999999   9999999999999999999999999999864332


Q ss_pred             c-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc
Q 044568          148 F-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR  221 (257)
Q Consensus       148 ~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (257)
                      .     ....++..|+|||.+.+..++.++||||||+++||+++ |..||.........    ..         ... ..
T Consensus       169 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~----~~---------~~~-~~  234 (325)
T 3kex_A          169 DKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEVP----DL---------LEK-GE  234 (325)
T ss_dssp             TTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTHHH----HH---------HHT-TC
T ss_pred             cccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHHHHH----HH---------HHc-CC
Confidence            2     34456678999999998889999999999999999999 99999765322210    00         000 00


Q ss_pred             CCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          222 GTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       222 ~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ....+...+..+.+++.+||+.||.+|| ++|+++.|
T Consensus       235 ~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~el~~~l  271 (325)
T 3kex_A          235 RLAQPQICTIDVYMVMVKCWMIDENIRPTFKELANEF  271 (325)
T ss_dssp             BCCCCTTBCTTTTHHHHHHTCSCTTTSCCHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            1122333455688999999999999999 99998764

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=100.00  E-value=2.4e-39  Score=277.08  Aligned_cols=226  Identities=19%  Similarity=0.220  Sum_probs=175.9

Q ss_pred             ccccceeeecccCCC-CC----eeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEE
Q 044568            4 TKLSNFYRSSFNARN-SP----WISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIE   68 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~-~~----~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~   68 (257)
                      +.++.||+++...++ .+    ++|...          +.+|++.+.         ++.|+||+++.+.+...+ .++|+
T Consensus        26 G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~~~~-~~~v~   95 (327)
T 3poz_A           26 GAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMA---------SVDNPHVCRLLGICLTST-VQLIT   95 (327)
T ss_dssp             ETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHH---------HCCBTTBCCEEEEEESSS-EEEEE
T ss_pred             CCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHH---------hCCCCCEeEEEEEEecCC-eEEEE
Confidence            578999999965443 33    555432          344555555         788999999999988754 77899


Q ss_pred             eecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc
Q 044568           69 RPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF  148 (257)
Q Consensus        69 E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~  148 (257)
                      ||+++|+|.+++.. ....+++..+..++.|++.||.|||++   +++||||||+||+++.++.+||+|||+++......
T Consensus        96 e~~~~g~L~~~l~~-~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~  171 (327)
T 3poz_A           96 QLMPFGCLLDYVRE-HKDNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEE  171 (327)
T ss_dssp             ECCTTCBHHHHHHH-STTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCTTHHHHHTTTC
T ss_pred             EecCCCcHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCChheEEECCCCCEEEccCcceeEccCCc
Confidence            99999999999986 567799999999999999999999999   99999999999999999999999999987533221


Q ss_pred             -----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcC
Q 044568          149 -----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRG  222 (257)
Q Consensus       149 -----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (257)
                           ....+|..|+|||.+.+..++.++||||||+++|||++ |+.||.......    ....         ... ...
T Consensus       172 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~----~~~~---------~~~-~~~  237 (327)
T 3poz_A          172 KEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASE----ISSI---------LEK-GER  237 (327)
T ss_dssp             C-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG----HHHH---------HHT-TCC
T ss_pred             ccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHHH----HHHH---------HHc-CCC
Confidence                 23345668999999999999999999999999999999 999997542211    0000         000 011


Q ss_pred             CCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          223 TKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       223 ~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ...+......+.+++.+||+.||++|| ++|+++.|
T Consensus       238 ~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l  273 (327)
T 3poz_A          238 LPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEF  273 (327)
T ss_dssp             CCCCTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHH
T ss_pred             CCCCccCCHHHHHHHHHHcCCChhhCCCHHHHHHHH
Confidence            123445567899999999999999999 99998754

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=2.5e-38  Score=270.83  Aligned_cols=227  Identities=17%  Similarity=0.208  Sum_probs=180.2

Q ss_pred             ccccceeeecccC-CCCCeeeccc---------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEE
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS---------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~---------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV   67 (257)
                      +.++.||++.... +..+++|...               +.+|++.+.         ++.|+||+++.+.+...+..++|
T Consensus        22 G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~---------~l~hp~iv~~~~~~~~~~~~~lv   92 (326)
T 2y0a_A           22 GQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILK---------EIQHPNVITLHEVYENKTDVILI   92 (326)
T ss_dssp             CSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHH---------HCCCTTBCCEEEEEECSSEEEEE
T ss_pred             CCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHH---------hCCCCCCCcEEEEEEeCCEEEEE
Confidence            5789999999764 5566776432               345555555         78899999999999999999999


Q ss_pred             EeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCC----ceEEeeeccccc
Q 044568           68 ERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW----TAKILDFGLAKL  143 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~----~~kl~dfg~~~~  143 (257)
                      |||+++|+|.+++.  ....+++.++..++.|++.||.|||++   +++||||||+||+++.++    .+||+|||++..
T Consensus        93 ~e~~~~~~L~~~l~--~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~  167 (326)
T 2y0a_A           93 LELVAGGELFDFLA--EKESLTEEEATEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHK  167 (326)
T ss_dssp             EECCCSCBHHHHHT--TSSCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCSSSSSCCEEECCCTTCEE
T ss_pred             EEcCCCCCHHHHHH--hcCCcCHHHHHHHHHHHHHHHHHHHHC---CeEcCCCCHHHEEEecCCCCCCCEEEEECCCCeE
Confidence            99999999999997  456799999999999999999999999   999999999999998877    799999999876


Q ss_pred             CC--CCcccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc
Q 044568          144 PN--EDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR  221 (257)
Q Consensus       144 ~~--~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (257)
                      ..  .......+|+.|+|||.+.+..++.++||||||+++|+|++|..||......   ...........   ..     
T Consensus       168 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~---~~~~~~~~~~~---~~-----  236 (326)
T 2y0a_A          168 IDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQ---ETLANVSAVNY---EF-----  236 (326)
T ss_dssp             CCTTSCCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHH---HHHHHHHHTCC---CC-----
T ss_pred             CCCCCccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHH---HHHHHHHhcCC---Cc-----
Confidence            43  2234557899999999999888999999999999999999999999754211   11111100000   00     


Q ss_pred             CCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          222 GTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       222 ~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +.......+..+.+++.+||+.||++|| +.|+++
T Consensus       237 ~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  271 (326)
T 2y0a_A          237 EDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ  271 (326)
T ss_dssp             CHHHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             CccccccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            0000112346788999999999999999 999986

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.2e-39  Score=277.56  Aligned_cols=221  Identities=18%  Similarity=0.211  Sum_probs=179.7

Q ss_pred             ccccceeeecc-cCCCCCeeeccc------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSF-NARNSPWISRVS------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~-~~~~~~~i~~~~------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||++.. .++..+++|...            +.+|++.+.         .+.|+||+++.+.+...+..++||||
T Consensus        20 G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~---------~l~hpnIv~l~~~~~~~~~~~lv~E~   90 (336)
T 3h4j_B           20 GSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLK---------LLRHPHIIKLYDVITTPTDIVMVIEY   90 (336)
T ss_dssp             ETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHT---------TCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHH---------hCCCCCCCeEEEEEEeCCEEEEEEEC
Confidence            57899999996 556677887543            234444444         78899999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC--c
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED--F  148 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~--~  148 (257)
                      + +|+|.+++.  ....+++.++..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++......  .
T Consensus        91 ~-~g~l~~~l~--~~~~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~~~~  164 (336)
T 3h4j_B           91 A-GGELFDYIV--EKKRMTEDEGRRFFQQIICAIEYCHRH---KIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNFL  164 (336)
T ss_dssp             C-CEEHHHHHH--HHCSCCHHHHHHHHHHHHHHHHHHHHH---TCCCCCCSTTTEEECTTCCEEECCSSCTBTTTTSBTT
T ss_pred             C-CCcHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCchhhEEEcCCCCEEEEEeccceeccCCccc
Confidence            9 689999987  346799999999999999999999999   9999999999999999999999999998754432  2


Q ss_pred             ccccCCCCccCcccccCCCC-CccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcC-CCCC
Q 044568          149 VIDKRDKGYMAPECYKRTPI-SVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRG-TKVD  226 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~~~~-~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  226 (257)
                      ....+|+.|+|||.+.+..+ +.++||||+|+++|+|++|+.||........                ....... ...+
T Consensus       165 ~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~----------------~~~i~~~~~~~p  228 (336)
T 3h4j_B          165 KTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNL----------------FKKVNSCVYVMP  228 (336)
T ss_dssp             CCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTC----------------BCCCCSSCCCCC
T ss_pred             ccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHHH----------------HHHHHcCCCCCc
Confidence            45578999999999988776 6899999999999999999999975522210                0011111 1234


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          227 KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       227 ~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ...++.+.+++.+||+.||.+|| ++|+++
T Consensus       229 ~~~s~~~~~li~~~L~~dP~~Rpt~~eil~  258 (336)
T 3h4j_B          229 DFLSPGAQSLIRRMIVADPMQRITIQEIRR  258 (336)
T ss_dssp             TTSCHHHHHHHHTTSCSSGGGSCCHHHHTT
T ss_pred             ccCCHHHHHHHHHHcCCChhHCcCHHHHHh
Confidence            44567789999999999999999 999975

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=100.00  E-value=1.7e-39  Score=277.40  Aligned_cols=248  Identities=20%  Similarity=0.213  Sum_probs=179.3

Q ss_pred             ccccceeeecccCCCCCeeeccchhhhHHHHhHhhhccccccccCCceeeeceeeeecCc----eeEEEeecCCCCHHHH
Q 044568            4 TKLSNFYRSSFNARNSPWISRVSWTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSV----SGKIERPVRNGSLTDI   79 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~----~~lV~E~~~~gsL~~~   79 (257)
                      +.++.||+++.. +..+++|.......-........ ..+.++.|+||+++.+.+.....    .++||||+++|+|.++
T Consensus        35 G~~g~Vy~~~~~-~~~vavK~~~~~~~~~~~~~~E~-~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~  112 (322)
T 3soc_A           35 GRFGCVWKAQLL-NEYVAVKIFPIQDKQSWQNEYEV-YSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDF  112 (322)
T ss_dssp             STTCEEEEEEET-TEEEEEEEECGGGHHHHHHHHHH-HTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHH
T ss_pred             cCceEEEEEEEC-CCEEEEEEeecCchHHHHHHHHH-HHHhcCCCCCchhhcceeccCCCCCceEEEEEecCCCCCHHHH
Confidence            578999999876 67788888654221111111111 13447889999999999987554    6999999999999999


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHhhCC-------CCCeeeccCCCCceeeCCCCceEEeeecccccCCCC-----
Q 044568           80 IFCSAERNPYWNQRVRIALDVAKGILYLHDEC-------EPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED-----  147 (257)
Q Consensus        80 l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~-------~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~-----  147 (257)
                      +..   ..+++.++..++.|++.||.|||++.       +.+++||||||+||+++.++.+||+|||++......     
T Consensus       113 l~~---~~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DFg~a~~~~~~~~~~~  189 (322)
T 3soc_A          113 LKA---NVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGD  189 (322)
T ss_dssp             HHH---CCBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCCTTCEEECTTSCCCC
T ss_pred             HHh---cCCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEEccCCcccccccccCccc
Confidence            964   45999999999999999999999751       228999999999999999999999999998653322     


Q ss_pred             cccccCCCCccCcccccCC-----CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhh--
Q 044568          148 FVIDKRDKGYMAPECYKRT-----PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLV--  220 (257)
Q Consensus       148 ~~~~~~~~~~~aPE~~~~~-----~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  220 (257)
                      .....+|+.|+|||.+.+.     .++.++||||||+++|||++|+.||............... .............  
T Consensus       190 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  268 (322)
T 3soc_A          190 THGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEI-GQHPSLEDMQEVVVH  268 (322)
T ss_dssp             CTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHH-CSSCCHHHHHHHHTT
T ss_pred             cccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhh-ccCCchhhhhhhhhc
Confidence            2335678999999999863     4567889999999999999999999865332211100000 0000000111100  


Q ss_pred             ---cCC----CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          221 ---RGT----KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       221 ---~~~----~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                         .+.    ......++.+.+++.+||+.||++|| +.|+++.|
T Consensus       269 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L  313 (322)
T 3soc_A          269 KKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERI  313 (322)
T ss_dssp             SCCCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             ccCCCCccccccccchHHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence               110    12334567899999999999999999 99999864

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=2.6e-39  Score=279.87  Aligned_cols=231  Identities=15%  Similarity=0.142  Sum_probs=175.0

Q ss_pred             ccccceeeecccC-CCCCeeeccchhhhHH---HHhHhhhccccccc-cCCceeeeceeeeecCceeEEEeecCCCCHHH
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSWTADIE---VLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVSGKIERPVRNGSLTD   78 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~   78 (257)
                      +.++.||+++... ++.+++|...-....+   ..........+..+ .|+||+++.+.+...+..++||||+++|+|.+
T Consensus        34 G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~lv~E~~~gg~L~~  113 (353)
T 3txo_A           34 GSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFFVMEFVNGGDLMF  113 (353)
T ss_dssp             ETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEECCCSCBHHH
T ss_pred             CCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEEEEEeCCCCCcHHH
Confidence            5689999998654 5667888655211100   00000000011133 59999999999999999999999999999999


Q ss_pred             HHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC---CCcccccCCC
Q 044568           79 IIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN---EDFVIDKRDK  155 (257)
Q Consensus        79 ~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~---~~~~~~~~~~  155 (257)
                      ++..  ...+++.++..++.|++.||.|||++   +|+||||||+|||++.++.+||+|||+++...   .......||+
T Consensus       114 ~l~~--~~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NILl~~~g~ikL~DFG~a~~~~~~~~~~~~~~gt~  188 (353)
T 3txo_A          114 HIQK--SRRFDEARARFYAAEIISALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGMCKEGICNGVTTATFCGTP  188 (353)
T ss_dssp             HHHH--HSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC---------CCG
T ss_pred             HHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CCcccCCCHHHEEECCCCCEEEccccceeecccCCccccccCCCc
Confidence            9973  46799999999999999999999999   99999999999999999999999999987532   2234557899


Q ss_pred             CccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc-CCCCCHHHHHHHH
Q 044568          156 GYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR-GTKVDKKNLENLV  234 (257)
Q Consensus       156 ~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~  234 (257)
                      .|+|||.+.+..++.++||||+||++|||++|+.||......   ....             .+.. ...++......+.
T Consensus       189 ~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~---~~~~-------------~i~~~~~~~p~~~~~~~~  252 (353)
T 3txo_A          189 DYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENED---DLFE-------------AILNDEVVYPTWLHEDAT  252 (353)
T ss_dssp             GGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHH---HHHH-------------HHHHCCCCCCTTSCHHHH
T ss_pred             CeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCHH---HHHH-------------HHHcCCCCCCCCCCHHHH
Confidence            999999998888999999999999999999999999755211   1111             1111 1133444567789


Q ss_pred             HHHHHcccCCCCCCC-h------HHHHH
Q 044568          235 KVGLWCVQDEPALRP-M------KCAVM  255 (257)
Q Consensus       235 ~l~~~cl~~~p~~RP-~------~ei~~  255 (257)
                      +++.+||+.||.+|| +      .|+++
T Consensus       253 ~li~~lL~~dP~~R~~~~~~~~~~~il~  280 (353)
T 3txo_A          253 GILKSFMTKNPTMRLGSLTQGGEHAILR  280 (353)
T ss_dssp             HHHHHHTCSSGGGSTTSGGGTCTHHHHT
T ss_pred             HHHHHHhhhCHHHccCCcccCCHHHHhh
Confidence            999999999999999 8      66654

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=2e-38  Score=274.46  Aligned_cols=183  Identities=19%  Similarity=0.225  Sum_probs=155.6

Q ss_pred             ccccceeeeccc-CCCCCeeeccc--------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCC
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS--------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNG   74 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~g   74 (257)
                      +.++.||+++.. ++..+++|...        +..|++.+.....    ..+.|+||+++.+.+...+..++||||+ ++
T Consensus        46 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~----~~~~h~~iv~~~~~~~~~~~~~lv~e~~-~~  120 (360)
T 3llt_A           46 GTFGRVLLCQHIDNKKYYAVKVVRNIKKYTRSAKIEADILKKIQN----DDINNNNIVKYHGKFMYYDHMCLIFEPL-GP  120 (360)
T ss_dssp             CSSEEEEEEEETTTCCEEEEEEECSCHHHHHHHHHHHHHHHHTCC----CSTTGGGBCCEEEEEEETTEEEEEECCC-CC
T ss_pred             cCCeEEEEEEECCCCeEEEEEEeccchhhhhhhHHHHHHHHHhcc----cCCCCCCeecccceeeECCeeEEEEcCC-CC
Confidence            578999999974 55567888654        2334444441111    2445999999999999999999999999 89


Q ss_pred             CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCC-------------------------
Q 044568           75 SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE-------------------------  129 (257)
Q Consensus        75 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~-------------------------  129 (257)
                      +|.+++.......+++.++..++.|++.||.|||++   +|+||||||+||+++.                         
T Consensus       121 ~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (360)
T 3llt_A          121 SLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKM---SLTHTDLKPENILLDDPYFEKSLITVRRVTDGKKIQIYRTK  197 (360)
T ss_dssp             BHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCTTCCEEEEEEECTTTCCEEEEEEES
T ss_pred             CHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCcccEEEccccccccccchhcccccccccccccC
Confidence            999999865556799999999999999999999999   9999999999999975                         


Q ss_pred             CCceEEeeecccccCCCCcccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcC
Q 044568          130 FWTAKILDFGLAKLPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEID  194 (257)
Q Consensus       130 ~~~~kl~dfg~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~  194 (257)
                      ++.+||+|||++...........+|+.|+|||.+.+..++.++|||||||++|||++|+.||...
T Consensus       198 ~~~~kl~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  262 (360)
T 3llt_A          198 STGIKLIDFGCATFKSDYHGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRTH  262 (360)
T ss_dssp             CCCEEECCCTTCEETTSCCCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             CCCEEEEeccCceecCCCCcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCCCCCCCC
Confidence            78899999999987666666778899999999999999999999999999999999999999754

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=8.7e-39  Score=280.29  Aligned_cols=225  Identities=15%  Similarity=0.184  Sum_probs=175.9

Q ss_pred             ccccceeeecccCCC-CCeeeccch------------hhhHHHHhHhhhccccccc-cCCceeeeceeeeecCceeEEEe
Q 044568            4 TKLSNFYRSSFNARN-SPWISRVSW------------TADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVSGKIER   69 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~-~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~~lV~E   69 (257)
                      +.++.||+++...++ .+++|.+.-            .+|.+++.         ++ .|+||+++.+.+...+..++|||
T Consensus        63 G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~---------~~~~hp~Iv~l~~~~~~~~~~~lV~E  133 (396)
T 4dc2_A           63 GSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFE---------QASNHPFLVGLHSCFQTESRLFFVIE  133 (396)
T ss_dssp             CSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHH---------HHTTCTTBCCEEEEEECSSEEEEEEE
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHH---------hcCCCCCcCeeEEEEEECCEEEEEEE
Confidence            578999999976554 566665431            22333322         33 69999999999999999999999


Q ss_pred             ecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccC---CC
Q 044568           70 PVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLP---NE  146 (257)
Q Consensus        70 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~---~~  146 (257)
                      |+++|+|.+++.  ....+++..+..++.|++.||.|||++   +|+||||||+|||++.++.+||+|||+++..   ..
T Consensus       134 ~~~gg~L~~~l~--~~~~l~~~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~~  208 (396)
T 4dc2_A          134 YVNGGDLMFHMQ--RQRKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGD  208 (396)
T ss_dssp             CCTTCBHHHHHH--HHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTC
T ss_pred             cCCCCcHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEECCCCCEEEeecceeeecccCCC
Confidence            999999999997  346799999999999999999999999   9999999999999999999999999998752   23


Q ss_pred             CcccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHH-HHHHHHHhhhhhhhhhhhc-CCC
Q 044568          147 DFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEII-LTNWVYKCFINRELNKLVR-GTK  224 (257)
Q Consensus       147 ~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~  224 (257)
                      ......||+.|+|||++.+..++.++|+|||||++|||++|+.||........... .....        ...... ...
T Consensus       209 ~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~--------~~~i~~~~~~  280 (396)
T 4dc2_A          209 TTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYL--------FQVILEKQIR  280 (396)
T ss_dssp             CBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHH--------HHHHHHCCCC
T ss_pred             ccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHH--------HHHHhccccC
Confidence            33556789999999999999999999999999999999999999975422211000 00000        011111 123


Q ss_pred             CCHHHHHHHHHHHHHcccCCCCCCC-h
Q 044568          225 VDKKNLENLVKVGLWCVQDEPALRP-M  250 (257)
Q Consensus       225 ~~~~~~~~l~~l~~~cl~~~p~~RP-~  250 (257)
                      ++......+.+++.+||+.||.+|| +
T Consensus       281 ~p~~~s~~~~~li~~lL~~dP~~R~~~  307 (396)
T 4dc2_A          281 IPRSLSVKAASVLKSFLNKDPKERLGC  307 (396)
T ss_dssp             CCTTSCHHHHHHHHHHTCSCTTTSTTC
T ss_pred             CCCcCCHHHHHHHHHHhcCCHhHcCCC
Confidence            4555667899999999999999999 7

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=100.00  E-value=2.5e-38  Score=267.88  Aligned_cols=238  Identities=25%  Similarity=0.386  Sum_probs=185.9

Q ss_pred             ccccceeeecccCCCCCeeeccc-------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS-------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~-------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||+++. ++..+++|...             +.+|++.+.         ++.|+|++++.+.+...+..++||||
T Consensus        42 G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~i~~~~~~~~~~~~~~lv~e~  111 (307)
T 2nru_A           42 GGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMA---------KCQHENLVELLGFSSDGDDLCLVYVY  111 (307)
T ss_dssp             CSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHH---------HCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred             CCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHH---------hcCCCCeEEEEEEEecCCceEEEEEe
Confidence            56889999987 56677777542             234444444         77899999999999999999999999


Q ss_pred             cCCCCHHHHHhcc-CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-
Q 044568           71 VRNGSLTDIIFCS-AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-  148 (257)
Q Consensus        71 ~~~gsL~~~l~~~-~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-  148 (257)
                      +++|+|.+++... ....+++..+..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||++....... 
T Consensus       112 ~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~  188 (307)
T 2nru_A          112 MPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQ  188 (307)
T ss_dssp             CTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECCSCSS
T ss_pred             cCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecCCCCHHHEEEcCCCcEEEeecccccccccccc
Confidence            9999999999743 245699999999999999999999999   99999999999999999999999999987543321 


Q ss_pred             ----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC-
Q 044568          149 ----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT-  223 (257)
Q Consensus       149 ----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  223 (257)
                          ....+++.|+|||.+.+ .++.++||||||+++|+|++|..||...........+....  ......+...++.. 
T Consensus       189 ~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  265 (307)
T 2nru_A          189 TVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEI--EDEEKTIEDYIDKKM  265 (307)
T ss_dssp             CEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSBTTHHHHHH--HTTSCCHHHHSCSSC
T ss_pred             cccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcchHHHHHHHHHh--hhhhhhhhhhccccc
Confidence                23467889999998765 47899999999999999999999998653332111111100  00111222333322 


Q ss_pred             -CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          224 -KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       224 -~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                       ..+...++.+.+++.+||+.||.+|| ++|+++.|
T Consensus       266 ~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L  301 (307)
T 2nru_A          266 NDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLL  301 (307)
T ss_dssp             SCCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHH
Confidence             34667788999999999999999999 99998864

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=100.00  E-value=8.8e-39  Score=271.28  Aligned_cols=227  Identities=22%  Similarity=0.335  Sum_probs=171.6

Q ss_pred             ccccceeeecccCCCCCeeeccch-------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCH
Q 044568            4 TKLSNFYRSSFNARNSPWISRVSW-------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSL   76 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~~-------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL   76 (257)
                      +.++.||+++.. +..+++|...-       .+|++.+.         ++.|+||+++.+.+.  +..++||||+++|+|
T Consensus        19 G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~E~~~l~---------~l~hp~iv~~~~~~~--~~~~lv~e~~~~~~L   86 (307)
T 2eva_A           19 GAFGVVCKAKWR-AKDVAIKQIESESERKAFIVELRQLS---------RVNHPNIVKLYGACL--NPVCLVMEYAEGGSL   86 (307)
T ss_dssp             CSSSEEEEEEET-TEEEEEEECSSTTHHHHHHHHHHHHH---------HCCCTTBCCEEEBCT--TTTEEEEECCTTCBH
T ss_pred             CCCceEEEEEEC-CeeEEEEEecChhHHHHHHHHHHHHh---------cCCCCCcCeEEEEEc--CCcEEEEEcCCCCCH
Confidence            578999999875 56788887642       34444444         788999999988776  568999999999999


Q ss_pred             HHHHhccCC-CCCCHHHHHHHHHHHHHHHHHHhh---CCCCCeeeccCCCCceeeCCCCc-eEEeeecccccCCCCcccc
Q 044568           77 TDIIFCSAE-RNPYWNQRVRIALDVAKGILYLHD---ECEPPILHCDIKPQNILMDEFWT-AKILDFGLAKLPNEDFVID  151 (257)
Q Consensus        77 ~~~l~~~~~-~~l~~~~~~~~~~~i~~~l~~lh~---~~~~~i~h~dl~~~nil~~~~~~-~kl~dfg~~~~~~~~~~~~  151 (257)
                      .+++..... ..+++..+..++.|++.||.|||+   +   +++||||||+||+++.++. +||+|||++..........
T Consensus        87 ~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~---~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~~~~~  163 (307)
T 2eva_A           87 YNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPK---ALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTNN  163 (307)
T ss_dssp             HHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSS---CCCCCCCSGGGEEEETTTTEEEECCCCC-----------
T ss_pred             HHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCC---CeecCCCChhHEEEeCCCCEEEEcccccccccccccccC
Confidence            999985322 247889999999999999999999   7   9999999999999988776 7999999987655555566


Q ss_pred             cCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHH
Q 044568          152 KRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLE  231 (257)
Q Consensus       152 ~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (257)
                      .+|+.|+|||.+.+..++.++||||||+++|||++|+.||...........   +...        . ..........+.
T Consensus       164 ~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~---~~~~--------~-~~~~~~~~~~~~  231 (307)
T 2eva_A          164 KGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIM---WAVH--------N-GTRPPLIKNLPK  231 (307)
T ss_dssp             -CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHHH---HHHH--------T-TCCCCCBTTCCH
T ss_pred             CCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHHH---HHHh--------c-CCCCCcccccCH
Confidence            789999999999988999999999999999999999999975432221110   0000        0 001122334557


Q ss_pred             HHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          232 NLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       232 ~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      .+.+++.+||+.||++|| ++|+++.|
T Consensus       232 ~l~~li~~~l~~dp~~Rps~~ell~~L  258 (307)
T 2eva_A          232 PIESLMTRCWSKDPSQRPSMEEIVKIM  258 (307)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             HHHHHHHHHhcCChhhCcCHHHHHHHH
Confidence            789999999999999999 99998764

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=100.00  E-value=6.1e-39  Score=266.35  Aligned_cols=233  Identities=17%  Similarity=0.186  Sum_probs=178.4

Q ss_pred             ccccceeeecccCCCCCeeeccchh----hhHHHHhHhhhccccccccCCceeeeceeeeec--CceeEEEeecCCCCHH
Q 044568            4 TKLSNFYRSSFNARNSPWISRVSWT----ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT--SVSGKIERPVRNGSLT   77 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~--~~~~lV~E~~~~gsL~   77 (257)
                      +.++.||+++.. +..+++|.....    ...+.  +...-..+.++.|+||+++.+.+...  +..++||||+++|+|.
T Consensus        21 G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~--~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~   97 (271)
T 3kmu_A           21 NHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRD--FNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLY   97 (271)
T ss_dssp             ETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHH--HHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEEECCTTCBHH
T ss_pred             CCcceEEEEEEC-CeeEEEEEecccccCHHHHHH--HHHHHHHHHhcCCCchhheEEEEccCCCCCeEeeecccCCCcHH
Confidence            568999999985 677888876531    11111  11111134478899999999998876  7889999999999999


Q ss_pred             HHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCC--eeeccCCCCceeeCCCCceEEeeecccccCCCCcccccCCC
Q 044568           78 DIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPP--ILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK  155 (257)
Q Consensus        78 ~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~--i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~  155 (257)
                      +++.......+++.++..++.|++.||.|||++   +  ++|+||+|+||+++.++.+++.|||+.....  .....+|+
T Consensus        98 ~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~--~~~~~~t~  172 (271)
T 3kmu_A           98 NVLHEGTNFVVDQSQAVKFALDMARGMAFLHTL---EPLIPRHALNSRSVMIDEDMTARISMADVKFSFQ--SPGRMYAP  172 (271)
T ss_dssp             HHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTS---SSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTS--CTTCBSCG
T ss_pred             HHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcC---CCceecCCCccceEEEcCCcceeEEeccceeeec--ccCccCCc
Confidence            999864445699999999999999999999999   8  9999999999999999999999988765422  23456788


Q ss_pred             CccCcccccCCCCC---ccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHH
Q 044568          156 GYMAPECYKRTPIS---VKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLEN  232 (257)
Q Consensus       156 ~~~aPE~~~~~~~~---~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (257)
                      .|+|||.+.+..++   .++||||||+++|||++|+.||.......   .....         ... ......+...+..
T Consensus       173 ~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~---~~~~~---------~~~-~~~~~~~~~~~~~  239 (271)
T 3kmu_A          173 AWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNME---IGMKV---------ALE-GLRPTIPPGISPH  239 (271)
T ss_dssp             GGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHH---HHHHH---------HHS-CCCCCCCTTCCHH
T ss_pred             cccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChHH---HHHHH---------Hhc-CCCCCCCCCCCHH
Confidence            99999999876544   47999999999999999999997542111   00000         000 0111334455678


Q ss_pred             HHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          233 LVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       233 l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      +.+++.+||+.||++|| ++|+++.|
T Consensus       240 ~~~li~~~l~~~p~~Rps~~~il~~L  265 (271)
T 3kmu_A          240 VSKLMKICMNEDPAKRPKFDMIVPIL  265 (271)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             HHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            99999999999999999 99999864

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=100.00  E-value=1.1e-38  Score=278.95  Aligned_cols=239  Identities=14%  Similarity=0.103  Sum_probs=178.4

Q ss_pred             cccceeeeccc-CCCCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            5 KLSNFYRSSFN-ARNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         5 ~~~~~y~~~~~-~~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      .++.||+++.. ++..+++|....           .+|++.+.         .+.|+||+++.+.+...+..++|||||+
T Consensus        39 ~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~---------~l~h~niv~~~~~~~~~~~~~lv~e~~~  109 (389)
T 3gni_B           39 DLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSK---------LFNHPNIVPYRATFIADNELWVVTSFMA  109 (389)
T ss_dssp             TTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHH---------HCCCTTBCCEEEEEEETTEEEEEEECCT
T ss_pred             CceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHH---------hCCCCCCCcEeEEEEECCEEEEEEEccC
Confidence            67899999976 566778887653           22444444         7889999999999999999999999999


Q ss_pred             CCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC------
Q 044568           73 NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE------  146 (257)
Q Consensus        73 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~------  146 (257)
                      +|+|.+++.......+++..+..++.|++.||.|||++   +|+||||||+||+++.++.+||+|||.+.....      
T Consensus       110 ~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~~~~~~~~  186 (389)
T 3gni_B          110 YGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHM---GYVHRSVKASHILISVDGKVYLSGLRSNLSMISHGQRQR  186 (389)
T ss_dssp             TCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCGGGCEECEETTEECS
T ss_pred             CCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEcccccceeecccccccc
Confidence            99999999865557799999999999999999999999   999999999999999999999999998653211      


Q ss_pred             ----CcccccCCCCccCcccccC--CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhh--------
Q 044568          147 ----DFVIDKRDKGYMAPECYKR--TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFI--------  212 (257)
Q Consensus       147 ----~~~~~~~~~~~~aPE~~~~--~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~--------  212 (257)
                          ......+|+.|+|||.+.+  ..++.++|||||||++|||++|+.||.................+...        
T Consensus       187 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (389)
T 3gni_B          187 VVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLDTSTIPAE  266 (389)
T ss_dssp             CBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHHHHC-----------------
T ss_pred             ccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCCccccccccccc
Confidence                1123467788999999987  57899999999999999999999999765333211110000000000        


Q ss_pred             -----------hhhhhh------------hhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          213 -----------NRELNK------------LVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       213 -----------~~~~~~------------~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                                 ......            .......+....+.+.+++.+||+.||++|| ++|+++
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~  333 (389)
T 3gni_B          267 ELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLN  333 (389)
T ss_dssp             ---------------------------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             cccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhc
Confidence                       000000            0000012334457799999999999999999 999975

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=100.00  E-value=3.8e-39  Score=280.25  Aligned_cols=228  Identities=16%  Similarity=0.197  Sum_probs=178.4

Q ss_pred             ccccceeeeccc------CCCCCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEE
Q 044568            4 TKLSNFYRSSFN------ARNSPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~~------~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV   67 (257)
                      +.++.||+++..      ++..+++|...          +.+|++.+.         ++.|+||+++.+.+...+..++|
T Consensus        82 G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~---------~l~hpnIv~~~~~~~~~~~~~lv  152 (367)
T 3l9p_A           82 GAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIIS---------KFNHQNIVRCIGVSLQSLPRFIL  152 (367)
T ss_dssp             CSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHH---------HCCCTTBCCEEEEECSSSSCEEE
T ss_pred             CCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHH---------hCCCCCCCeEEEEEecCCCCEEE
Confidence            578999999854      33457788753          233444444         77899999999999999999999


Q ss_pred             EeecCCCCHHHHHhccC-----CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCC---ceEEeeec
Q 044568           68 ERPVRNGSLTDIIFCSA-----ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW---TAKILDFG  139 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~-----~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~---~~kl~dfg  139 (257)
                      |||+++|+|.+++....     ...+++.++..++.|++.||.|||++   +|+||||||+||+++.++   .+||+|||
T Consensus       153 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~~~~kL~DFG  229 (367)
T 3l9p_A          153 LELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAKIGDFG  229 (367)
T ss_dssp             EECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEECCCH
T ss_pred             EEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEEecCCCCceEEECCCc
Confidence            99999999999997532     24689999999999999999999999   999999999999998544   59999999


Q ss_pred             ccccC-----CCCcccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhh
Q 044568          140 LAKLP-----NEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFIN  213 (257)
Q Consensus       140 ~~~~~-----~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~  213 (257)
                      +++..     ........+|+.|+|||.+.+..++.++|||||||++|||++ |..||......   .....        
T Consensus       230 ~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~---~~~~~--------  298 (367)
T 3l9p_A          230 MARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQ---EVLEF--------  298 (367)
T ss_dssp             HHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH---HHHHH--------
T ss_pred             cccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHH---HHHHH--------
Confidence            98632     122234456788999999998899999999999999999998 99999754211   10000        


Q ss_pred             hhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          214 RELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                        ... ......+...+..+.+++.+||+.||++|| +.|+++.|
T Consensus       299 --i~~-~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l  340 (367)
T 3l9p_A          299 --VTS-GGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERI  340 (367)
T ss_dssp             --HHT-TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             --HHc-CCCCCCCccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHH
Confidence              000 001123445567799999999999999999 99998764

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=100.00  E-value=4.6e-39  Score=267.58  Aligned_cols=225  Identities=20%  Similarity=0.259  Sum_probs=171.9

Q ss_pred             ccccceeeecccCCCCCeeeccch-------------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFNARNSPWISRVSW-------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~~-------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||+++.. +..+++|....             .+|++.+.         .+.|+|++++.+.+...+..++||||
T Consensus        18 G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~---------~l~h~~i~~~~~~~~~~~~~~lv~e~   87 (271)
T 3dtc_A           18 GGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFA---------MLKHPNIIALRGVCLKEPNLCLVMEF   87 (271)
T ss_dssp             ETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHH---------HCCCTTBCCEEEEECCC--CEEEEEC
T ss_pred             CCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHH---------hcCCCCEeeEEEEEecCCceEEEEEc
Confidence            578999999965 67788876542             23444444         77899999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCC---eeeccCCCCceeeCC--------CCceEEeeec
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPP---ILHCDIKPQNILMDE--------FWTAKILDFG  139 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~---i~h~dl~~~nil~~~--------~~~~kl~dfg  139 (257)
                      +++++|.+++.   ...+++..+..++.|++.||.|||++   +   ++|+||||+||+++.        ++.++|+|||
T Consensus        88 ~~~~~L~~~~~---~~~~~~~~~~~i~~~l~~~l~~lH~~---~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg  161 (271)
T 3dtc_A           88 ARGGPLNRVLS---GKRIPPDILVNWAVQIARGMNYLHDE---AIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFG  161 (271)
T ss_dssp             CTTEEHHHHHT---SSCCCHHHHHHHHHHHHHHHHHHHHS---SSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCC
T ss_pred             CCCCCHHHHhh---cCCCCHHHHHHHHHHHHHHHHHHHhC---CCCceeecCCchHHEEEecccccccccCcceEEccCC
Confidence            99999999994   45799999999999999999999999   7   999999999999986        6789999999


Q ss_pred             ccccCCCC-cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhh
Q 044568          140 LAKLPNED-FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNK  218 (257)
Q Consensus       140 ~~~~~~~~-~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (257)
                      .+...... .....+++.|+|||.+.+..++.++||||||+++|+|++|+.||......   .....          ...
T Consensus       162 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~---~~~~~----------~~~  228 (271)
T 3dtc_A          162 LAREWHRTTKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGL---AVAYG----------VAM  228 (271)
T ss_dssp             C-------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHH---HHHHH----------HHT
T ss_pred             cccccccccccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH---HHHHh----------hhc
Confidence            98754332 23457888999999999888999999999999999999999999754211   00000          000


Q ss_pred             hhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          219 LVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       219 ~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      .......+...++.+.+++.+||+.||.+|| +.|+++.|
T Consensus       229 ~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L  268 (271)
T 3dtc_A          229 NKLALPIPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQL  268 (271)
T ss_dssp             SCCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCCCCCCCcccCHHHHHHHHHHhcCCcccCcCHHHHHHHH
Confidence            0001133445567899999999999999999 99999864

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=100.00  E-value=2.6e-38  Score=265.96  Aligned_cols=233  Identities=16%  Similarity=0.120  Sum_probs=178.1

Q ss_pred             ccccceeeecc-cCCCCCeeecc-------chhhhHHHHhHhhhccccccccCCceeeeceee-eecCceeEEEeecCCC
Q 044568            4 TKLSNFYRSSF-NARNSPWISRV-------SWTADIEVLSVAMRGSKCTRIRGGLLLNVPVRA-KLTSVSGKIERPVRNG   74 (257)
Q Consensus         4 ~~~~~~y~~~~-~~~~~~~i~~~-------~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~-~~~~~~~lV~E~~~~g   74 (257)
                      +.++.||+++. .+++.+++|..       .+.+|++.+.         .+.|++++.....+ ...+..++||||+ ++
T Consensus        20 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~l~---------~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~~   89 (296)
T 4hgt_A           20 GSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYK---------MMQGGVGIPTIRWCGAEGDYNVMVMELL-GP   89 (296)
T ss_dssp             CSSSEEEEEEETTTTEEEEEEEEEC---CCCHHHHHHHHH---------HHTTSTTCCCEEEEEEETTEEEEEEECC-CC
T ss_pred             CCCeEEEEEEEcCCCceEEEEeecccccchHHHHHHHHHH---------HhcCCCCCCeeeeecCCCCceEEEEEcc-CC
Confidence            57899999995 55566777742       2455665555         66677766665555 5677889999999 89


Q ss_pred             CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceee---CCCCceEEeeecccccCCCCc---
Q 044568           75 SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKILDFGLAKLPNEDF---  148 (257)
Q Consensus        75 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~---~~~~~~kl~dfg~~~~~~~~~---  148 (257)
                      +|.+++.. ....+++.++..++.|++.||.|||++   +++||||||+||++   +.++.+||+|||++.......   
T Consensus        90 ~L~~~~~~-~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~  165 (296)
T 4hgt_A           90 SLEDLFNF-CSRKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQ  165 (296)
T ss_dssp             BHHHHHHH-TTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBCTTTCC
T ss_pred             CHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeeeeccCCCCeEEEecCccceeccCcccCc
Confidence            99999975 456799999999999999999999999   99999999999999   788899999999987543321   


Q ss_pred             -------ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc
Q 044568          149 -------VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR  221 (257)
Q Consensus       149 -------~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (257)
                             ....+|+.|+|||.+.+..++.++||||||+++|||++|+.||......................+ ...   
T Consensus       166 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~-~~~---  241 (296)
T 4hgt_A          166 HIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTP-IEV---  241 (296)
T ss_dssp             BCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSC-HHH---
T ss_pred             cCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcccccch-hhh---
Confidence                   245778899999999998999999999999999999999999986543332222222111111100 000   


Q ss_pred             CCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          222 GTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       222 ~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                         .....++.+.+++.+||+.||++|| ++|+++.|
T Consensus       242 ---~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l  275 (296)
T 4hgt_A          242 ---LCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLF  275 (296)
T ss_dssp             ---HTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHH
T ss_pred             ---hhccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence               1112346799999999999999999 99998864

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=100.00  E-value=7.1e-39  Score=267.90  Aligned_cols=223  Identities=18%  Similarity=0.204  Sum_probs=180.5

Q ss_pred             ccccceeeeccc-CCCCCeeeccc-----hhhhHHHHhHhhhccccccccCCceeeeceeeee----------------c
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS-----WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL----------------T   61 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~-----~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~----------------~   61 (257)
                      +.++.||+++.. ++..+++|...     +.+|++.+.         ++.|+|++++.+.+..                .
T Consensus        22 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~e~~~l~---------~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (284)
T 2a19_B           22 GGFGQVFKAKHRIDGKTYVIKRVKYNNEKAEREVKALA---------KLDHVNIVHYNGCWDGFDYDPETSSKNSSRSKT   92 (284)
T ss_dssp             SSSCCEEEEEETTTCCEEEEEEEECCSGGGHHHHHHHH---------HCCCTTBCCEEEEEEEEEEC---------CCEE
T ss_pred             CCceEEEEEEEcCCCeEEEEEEeccccHHHHHHHHHHH---------hCCCCCEEEEeeeEeccccCcccccccccccCc
Confidence            578999999976 66777887654     456666666         7889999999998754                4


Q ss_pred             CceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeeccc
Q 044568           62 SVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA  141 (257)
Q Consensus        62 ~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~  141 (257)
                      ...++||||+++|+|.+++.......+++..+..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||++
T Consensus        93 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~  169 (284)
T 2a19_B           93 KCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSK---KLINRDLKPSNIFLVDTKQVKIGDFGLV  169 (284)
T ss_dssp             EEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTC
T ss_pred             ceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCCHHHEEEcCCCCEEECcchhh
Confidence            5679999999999999999764556799999999999999999999999   9999999999999999999999999998


Q ss_pred             ccCCCC--cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhh
Q 044568          142 KLPNED--FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKL  219 (257)
Q Consensus       142 ~~~~~~--~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (257)
                      ......  .....+++.|+|||.+.+..++.++||||||+++|||++|..||...     ..    .         ...+
T Consensus       170 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~-----~~----~---------~~~~  231 (284)
T 2a19_B          170 TSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFET-----SK----F---------FTDL  231 (284)
T ss_dssp             EESSCCSCCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHH-----HH----H---------HHHH
T ss_pred             eeccccccccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhH-----HH----H---------HHHh
Confidence            754332  24456888999999999888999999999999999999999987421     00    0         0001


Q ss_pred             hcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          220 VRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       220 ~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                       .....+...+..+.+++.+||+.||++|| +.|+++.|
T Consensus       232 -~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l  269 (284)
T 2a19_B          232 -RDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTL  269 (284)
T ss_dssp             -HTTCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             -hcccccccCCHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence             11112233446688999999999999999 99998764

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=100.00  E-value=4.9e-39  Score=276.08  Aligned_cols=228  Identities=18%  Similarity=0.203  Sum_probs=179.8

Q ss_pred             ccccceeeecccC------CCCCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEE
Q 044568            4 TKLSNFYRSSFNA------RNSPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~~~------~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV   67 (257)
                      +.++.||+++...      +..+++|...          +.+|++.+.         ++.|+||+++.+.+...+..++|
T Consensus        58 G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~---------~l~hp~iv~~~~~~~~~~~~~lv  128 (343)
T 1luf_A           58 GAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMA---------EFDNPNIVKLLGVCAVGKPMCLL  128 (343)
T ss_dssp             CSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHH---------TCCCTTBCCEEEEECSSSSCEEE
T ss_pred             cCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHH---------hCCCCCEEEEEEEEccCCceEEE
Confidence            5689999999754      2556777653          234444444         78899999999999999999999


Q ss_pred             EeecCCCCHHHHHhccC----------------------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCce
Q 044568           68 ERPVRNGSLTDIIFCSA----------------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNI  125 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~----------------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~ni  125 (257)
                      |||+++|+|.+++....                      ...+++.++..++.|++.||.|||++   +++||||||+||
T Consensus       129 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NI  205 (343)
T 1luf_A          129 FEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---KFVHRDLATRNC  205 (343)
T ss_dssp             EECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGE
T ss_pred             EecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceE
Confidence            99999999999997532                      25789999999999999999999999   999999999999


Q ss_pred             eeCCCCceEEeeecccccCCCC-----cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChh
Q 044568          126 LMDEFWTAKILDFGLAKLPNED-----FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPE  199 (257)
Q Consensus       126 l~~~~~~~kl~dfg~~~~~~~~-----~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~  199 (257)
                      +++.++.+||+|||++......     .....+++.|+|||.+.+..++.++||||||+++|||++ |..||.....   
T Consensus       206 l~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~---  282 (343)
T 1luf_A          206 LVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAH---  282 (343)
T ss_dssp             EECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH---
T ss_pred             EECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCCCh---
Confidence            9999999999999998643221     233456778999999998889999999999999999999 9999975421   


Q ss_pred             hHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          200 EIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ......     ....      .....+...+..+.+++.+||+.||.+|| +.|+++.|
T Consensus       283 ~~~~~~-----~~~~------~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L  330 (343)
T 1luf_A          283 EEVIYY-----VRDG------NILACPENCPLELYNLMRLCWSKLPADRPSFCSIHRIL  330 (343)
T ss_dssp             HHHHHH-----HHTT------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             HHHHHH-----HhCC------CcCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHH
Confidence            100000     0000      01123445567899999999999999999 99998764

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=7.2e-39  Score=265.71  Aligned_cols=227  Identities=17%  Similarity=0.247  Sum_probs=182.7

Q ss_pred             ccccceeeecccCCCCCeeeccch--------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVSW--------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGS   75 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~~--------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gs   75 (257)
                      +.++.||+++..++..+++|....        .+|++.+.         ++.|+|++++.+.+...+..++||||+++++
T Consensus        19 G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~---------~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~   89 (267)
T 3t9t_A           19 GQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMM---------KLSHPKLVQLYGVCLEQAPICLVTEFMEHGC   89 (267)
T ss_dssp             ETTEEEEEEEETTTEEEEEEEECTTTBCHHHHHHHHHHHH---------TCCCTTBCCEEEEECSSSSCEEEECCCTTCB
T ss_pred             CCceeEEEEEecCCCeEEEEEccccCCCHHHHHHHHHHHH---------hCCCCCEeeEEEEEccCCCeEEEEeCCCCCc
Confidence            568899999988888888886542        34444444         7789999999999999999999999999999


Q ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc----ccc
Q 044568           76 LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF----VID  151 (257)
Q Consensus        76 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~----~~~  151 (257)
                      |.+++.. ....+++..+..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||.+.......    ...
T Consensus        90 L~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~  165 (267)
T 3t9t_A           90 LSDYLRT-QRGLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGT  165 (267)
T ss_dssp             HHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHHHHSTTST
T ss_pred             HHHHHhh-CcccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEECCCCCEEEcccccccccccccccccccc
Confidence            9999975 456789999999999999999999999   99999999999999999999999999987543322    233


Q ss_pred             cCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHH
Q 044568          152 KRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNL  230 (257)
Q Consensus       152 ~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (257)
                      .++..|+|||.+.+..++.++|+||||+++|+|++ |+.||......   .....          ..... ....+...+
T Consensus       166 ~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~---~~~~~----------i~~~~-~~~~~~~~~  231 (267)
T 3t9t_A          166 KFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNS---EVVED----------ISTGF-RLYKPRLAS  231 (267)
T ss_dssp             TCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH---HHHHH----------HHTTC-CCCCCTTSC
T ss_pred             cccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCHH---HHHHH----------HhcCC-cCCCCccCc
Confidence            45567999999998889999999999999999999 89999754211   10100          00000 012233445


Q ss_pred             HHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          231 ENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       231 ~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ..+.+++.+||+.||++|| ++|+++.|
T Consensus       232 ~~l~~li~~~l~~~p~~Rps~~~ll~~L  259 (267)
T 3t9t_A          232 THVYQIMNHCWRERPEDRPAFSRLLRQL  259 (267)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             HHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence            7789999999999999999 99998864

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=2.4e-38  Score=274.73  Aligned_cols=227  Identities=16%  Similarity=0.134  Sum_probs=178.5

Q ss_pred             ccccceeeecccC-CCCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      +.++.||++.... +..+++|....           .+|++.+.         ++.|+||+++.+.+...+..++||||+
T Consensus        40 G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~---------~l~hpnIv~~~~~~~~~~~~~lv~e~~  110 (362)
T 2bdw_A           40 GAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICR---------KLQHPNIVRLHDSIQEESFHYLVFDLV  110 (362)
T ss_dssp             ETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHH---------HCCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHH---------hCCCCCCCeEEEEEEeCCEEEEEEecC
Confidence            5689999998654 55677776532           23444444         788999999999999999999999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCC---CceEEeeecccccCCCCc
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF---WTAKILDFGLAKLPNEDF  148 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~---~~~kl~dfg~~~~~~~~~  148 (257)
                      ++|+|.+.+.  ....+++.++..++.|++.||.|||++   +|+||||||+||+++.+   +.+||+|||++.......
T Consensus       111 ~gg~L~~~l~--~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~~~  185 (362)
T 2bdw_A          111 TGGELFEDIV--AREFYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSE  185 (362)
T ss_dssp             CSCBHHHHHT--TCSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTTCC
T ss_pred             CCCCHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEeecCcceEecCCc
Confidence            9999999997  456799999999999999999999999   99999999999999864   459999999987654322


Q ss_pred             --ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCC
Q 044568          149 --VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVD  226 (257)
Q Consensus       149 --~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (257)
                        ....+|+.|+|||.+.+..++.++||||||+++|+|++|..||.....   .........     ..   ...+....
T Consensus       186 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~---~~~~~~i~~-----~~---~~~~~~~~  254 (362)
T 2bdw_A          186 AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQ---HRLYAQIKA-----GA---YDYPSPEW  254 (362)
T ss_dssp             SCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHH-----TC---CCCCTTGG
T ss_pred             ccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH---HHHHHHHHh-----CC---CCCCcccc
Confidence              345789999999999988999999999999999999999999975421   111111100     00   00001111


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          227 KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       227 ~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ...++.+.+++.+||+.||++|| +.|+++
T Consensus       255 ~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  284 (362)
T 2bdw_A          255 DTVTPEAKSLIDSMLTVNPKKRITADQALK  284 (362)
T ss_dssp             GGSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             cCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence            23457789999999999999999 999875

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=2.7e-38  Score=281.22  Aligned_cols=227  Identities=15%  Similarity=0.108  Sum_probs=177.7

Q ss_pred             ccccceeeeccc-CCCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      +.++.||++... ++..+++|.+.           +.+|++.+.         ++.|+||+++.+.+...+..++||||+
T Consensus        22 G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~---------~l~hpnIv~l~~~~~~~~~~~lv~E~~   92 (444)
T 3soa_A           22 GAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICR---------LLKHPNIVRLHDSISEEGHHYLIFDLV   92 (444)
T ss_dssp             C--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHH---------HCCBTTBCCEEEEEECSSEEEEEECCC
T ss_pred             CCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHH---------hCCCcCCCeEEEEEEECCEEEEEEEeC
Confidence            578999999854 45556666533           234444444         788999999999999999999999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeC---CCCceEEeeecccccCCCCc
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD---EFWTAKILDFGLAKLPNEDF  148 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~---~~~~~kl~dfg~~~~~~~~~  148 (257)
                      ++|+|.+.+.  ....+++.++..++.|++.||.|||++   +|+||||||+||+++   .++.+||+|||++.......
T Consensus        93 ~gg~L~~~i~--~~~~~~e~~~~~i~~qil~aL~~lH~~---givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~~~  167 (444)
T 3soa_A           93 TGGELFEDIV--AREYYSEADASHCIQQILEAVLHCHQM---GVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQ  167 (444)
T ss_dssp             BCCBHHHHHH--HCSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCTTC
T ss_pred             CCCCHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEeccCCCCcEEEccCceeEEecCCC
Confidence            9999999998  446799999999999999999999999   999999999999998   46789999999997654332


Q ss_pred             ---ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCC
Q 044568          149 ---VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKV  225 (257)
Q Consensus       149 ---~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (257)
                         ....||+.|+|||.+.+..++.++||||+|+++|+|++|..||....   .........     ...   ...+...
T Consensus       168 ~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~---~~~~~~~i~-----~~~---~~~~~~~  236 (444)
T 3soa_A          168 QAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDED---QHRLYQQIK-----AGA---YDFPSPE  236 (444)
T ss_dssp             CBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSS---HHHHHHHHH-----HTC---CCCCTTT
T ss_pred             ceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCcc---HHHHHHHHH-----hCC---CCCCccc
Confidence               34578999999999999899999999999999999999999997542   111111110     000   0001111


Q ss_pred             CHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          226 DKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       226 ~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ....++.+.+++.+||+.||.+|| +.|+++
T Consensus       237 ~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~  267 (444)
T 3soa_A          237 WDTVTPEAKDLINKMLTINPSKRITAAEALK  267 (444)
T ss_dssp             TTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             cccCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence            223457789999999999999999 999986

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=1.7e-38  Score=273.98  Aligned_cols=232  Identities=15%  Similarity=0.172  Sum_probs=175.3

Q ss_pred             ccccceeeecccC-CCCCeeeccchh-----hhHHHHhHhhhccccccc-cCCceeeeceeeeecCceeEEEeecCCCCH
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSWT-----ADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVSGKIERPVRNGSL   76 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL   76 (257)
                      +.++.||+++... +..+++|.....     +..+.+.  .....+.++ .|+||+++.+.+...+..++||||+++|+|
T Consensus        20 G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~--~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv~e~~~gg~L   97 (345)
T 3a8x_A           20 GSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQ--TEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDL   97 (345)
T ss_dssp             CSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHH--HHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCBH
T ss_pred             cCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHH--HHHHHHHhcCCCCccCeEEEEEEeCCEEEEEEeCCCCCcH
Confidence            5789999999765 455677765421     1111111  001011143 799999999999999999999999999999


Q ss_pred             HHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC---CCcccccC
Q 044568           77 TDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN---EDFVIDKR  153 (257)
Q Consensus        77 ~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~---~~~~~~~~  153 (257)
                      .+++..  ...+++..+..++.|++.||.|||++   +|+||||||+||+++.++.+||+|||+++...   .......|
T Consensus        98 ~~~l~~--~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~~~~~~~~~~g  172 (345)
T 3a8x_A           98 MFHMQR--QRKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCG  172 (345)
T ss_dssp             HHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCGGGCBCSCCTTCCBCCCCS
T ss_pred             HHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEEeccccccccCCCCcccccCC
Confidence            999973  45799999999999999999999999   99999999999999999999999999987522   23345578


Q ss_pred             CCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhH-HHHHHHHHhhhhhhhhhhhc-CCCCCHHHHH
Q 044568          154 DKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEI-ILTNWVYKCFINRELNKLVR-GTKVDKKNLE  231 (257)
Q Consensus       154 ~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  231 (257)
                      |+.|+|||.+.+..++.++|+||+||++|||++|+.||.......... ........        .... ...++.....
T Consensus       173 t~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~--------~i~~~~~~~p~~~s~  244 (345)
T 3a8x_A          173 TPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQ--------VILEKQIRIPRSLSV  244 (345)
T ss_dssp             CGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHH--------HHHHCCCCCCTTSCH
T ss_pred             CccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHH--------HHHcCCCCCCCCCCH
Confidence            999999999999899999999999999999999999997532221100 00000000        1111 1134445567


Q ss_pred             HHHHHHHHcccCCCCCCC-h
Q 044568          232 NLVKVGLWCVQDEPALRP-M  250 (257)
Q Consensus       232 ~l~~l~~~cl~~~p~~RP-~  250 (257)
                      .+.+++.+||+.||.+|| +
T Consensus       245 ~~~~li~~lL~~dP~~R~~~  264 (345)
T 3a8x_A          245 KAASVLKSFLNKDPKERLGC  264 (345)
T ss_dssp             HHHHHHHHHTCSSTTTSTTC
T ss_pred             HHHHHHHHHhcCCHhHCCCC
Confidence            899999999999999999 7

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=5.4e-38  Score=274.28  Aligned_cols=225  Identities=17%  Similarity=0.192  Sum_probs=180.1

Q ss_pred             ccccceeeecccCC-CCCeeeccch------------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFNAR-NSPWISRVSW------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~~~-~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||++....+ ..+++|...-            .+|++.+.         .+.|+||+++.+.+...+..++||||
T Consensus        26 G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~---------~l~hp~Iv~l~~~~~~~~~~~lv~e~   96 (384)
T 4fr4_A           26 GSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQ---------GLEHPFLVNLWYSFQDEEDMFMVVDL   96 (384)
T ss_dssp             CTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHH---------TCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHH---------hCCCCCCCcEEEEEEeCCEEEEEEec
Confidence            57899999986654 4567776432            23444444         78899999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC--Cc
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE--DF  148 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~--~~  148 (257)
                      +.+|+|.+++.  ....+++..+..++.|++.||.|||++   +|+||||||+||+++.++.+||+|||++.....  ..
T Consensus        97 ~~gg~L~~~l~--~~~~l~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~  171 (384)
T 4fr4_A           97 LLGGDLRYHLQ--QNVHFKEETVKLFICELVMALDYLQNQ---RIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQI  171 (384)
T ss_dssp             CTTEEHHHHHH--TTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCTTCCB
T ss_pred             CCCCcHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCcHHHeEECCCCCEEEeccceeeeccCCCce
Confidence            99999999998  556799999999999999999999999   999999999999999999999999999976432  33


Q ss_pred             ccccCCCCccCcccccC---CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCC
Q 044568          149 VIDKRDKGYMAPECYKR---TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKV  225 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~---~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (257)
                      ....||+.|+|||.+..   ..++.++|||||||++|||++|..||...............            .......
T Consensus       172 ~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~------------~~~~~~~  239 (384)
T 4fr4_A          172 TTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIVHTF------------ETTVVTY  239 (384)
T ss_dssp             CCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHHHHHHHH------------HHCCCCC
T ss_pred             eccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCccHHHHHHHH------------hhcccCC
Confidence            55678999999999874   35889999999999999999999999765333221111110            0011133


Q ss_pred             CHHHHHHHHHHHHHcccCCCCCCC--hHHHH
Q 044568          226 DKKNLENLVKVGLWCVQDEPALRP--MKCAV  254 (257)
Q Consensus       226 ~~~~~~~l~~l~~~cl~~~p~~RP--~~ei~  254 (257)
                      +......+.+++.+||+.||.+||  ++++.
T Consensus       240 p~~~s~~~~~li~~lL~~dP~~R~s~~~~l~  270 (384)
T 4fr4_A          240 PSAWSQEMVSLLKKLLEPNPDQRFSQLSDVQ  270 (384)
T ss_dssp             CTTSCHHHHHHHHHHSCSSGGGSCCSHHHHH
T ss_pred             CCcCCHHHHHHHHHHhcCCHhHhcccHHHHH
Confidence            445567899999999999999999  55554

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=2e-38  Score=267.61  Aligned_cols=224  Identities=18%  Similarity=0.159  Sum_probs=173.9

Q ss_pred             ccccceeeecccC-CCCCeeeccc-----------------------------------hhhhHHHHhHhhhcccccccc
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS-----------------------------------WTADIEVLSVAMRGSKCTRIR   47 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~   47 (257)
                      +.++.||++.... +..+++|...                                   +.+|++.+.         ++.
T Consensus        24 G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~---------~l~   94 (298)
T 2zv2_A           24 GSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK---------KLD   94 (298)
T ss_dssp             --CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH---------TCC
T ss_pred             cCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH---------hCC
Confidence            5789999998654 5556777543                                   344555555         788


Q ss_pred             CCceeeeceeeee--cCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCce
Q 044568           48 GGLLLNVPVRAKL--TSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNI  125 (257)
Q Consensus        48 h~~i~~~~~~~~~--~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~ni  125 (257)
                      |+||+++.+.+..  .+..++||||+++|+|.+++   ....+++.++..++.|++.||.|||++   +++||||||+||
T Consensus        95 h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~---~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Ni  168 (298)
T 2zv2_A           95 HPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVP---TLKPLSEDQARFYFQDLIKGIEYLHYQ---KIIHRDIKPSNL  168 (298)
T ss_dssp             CTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSS---CSSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGE
T ss_pred             CCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHh---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHE
Confidence            9999999999886  56889999999999999876   446799999999999999999999999   999999999999


Q ss_pred             eeCCCCceEEeeecccccCCCC---cccccCCCCccCcccccCCC---CCccccchhHHHHHHHHHhcCCCCCcCCCChh
Q 044568          126 LMDEFWTAKILDFGLAKLPNED---FVIDKRDKGYMAPECYKRTP---ISVKADVYGYGIVLLETICCRKNMEIDASKPE  199 (257)
Q Consensus       126 l~~~~~~~kl~dfg~~~~~~~~---~~~~~~~~~~~aPE~~~~~~---~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~  199 (257)
                      +++.++.+||+|||++......   .....+|+.|+|||.+.+..   ++.++||||||+++|||++|+.||.....   
T Consensus       169 l~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~---  245 (298)
T 2zv2_A          169 LVGEDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDERI---  245 (298)
T ss_dssp             EECTTSCEEECCCTTCEECSSSSCEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCSSH---
T ss_pred             EECCCCCEEEecCCCccccccccccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCccH---
Confidence            9999999999999998764432   23457889999999998665   36889999999999999999999975411   


Q ss_pred             hHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          200 EIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ......          ..............++.+.+++.+||+.||++|| +.|+++
T Consensus       246 ~~~~~~----------~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~  292 (298)
T 2zv2_A          246 MCLHSK----------IKSQALEFPDQPDIAEDLKDLITRMLDKNPESRIVVPEIKL  292 (298)
T ss_dssp             HHHHHH----------HHHCCCCCCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             HHHHHH----------HhcccCCCCCccccCHHHHHHHHHHhhcChhhCCCHHHHhc
Confidence            100000          0000000111223456789999999999999999 999975

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=100.00  E-value=2.6e-38  Score=283.34  Aligned_cols=222  Identities=19%  Similarity=0.268  Sum_probs=181.2

Q ss_pred             ccccceeeeccc-CCCCCeeeccch------------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||+++.. ++..+++|...-            .+|++.+.         .+.|+||+++.+.+...+..++||||
T Consensus        27 G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~---------~l~HpnIv~l~~~~~~~~~~~lv~E~   97 (476)
T 2y94_A           27 GTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLK---------LFRHPHIIKLYQVISTPSDIFMVMEY   97 (476)
T ss_dssp             CSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHT---------TCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHH---------hCCCCCCCcEEEEEEECCEEEEEEeC
Confidence            678999999976 667788887642            23333333         78899999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC--c
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED--F  148 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~--~  148 (257)
                      +++|+|.+++.  ....+++.++..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++......  .
T Consensus        98 ~~gg~L~~~l~--~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~~~  172 (476)
T 2y94_A           98 VSGGELFDYIC--KNGRLDEKESRRLFQQILSGVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFL  172 (476)
T ss_dssp             CSSEEHHHHTT--SSSSCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEECTTCCEEECCCSSCEECCTTCCB
T ss_pred             CCCCcHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHC---CCCcccccHHHEEEecCCCeEEEeccchhhccccccc
Confidence            99999999997  456799999999999999999999999   9999999999999999999999999998764432  3


Q ss_pred             ccccCCCCccCcccccCCCC-CccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC-CCC
Q 044568          149 VIDKRDKGYMAPECYKRTPI-SVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT-KVD  226 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~~~~-~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  226 (257)
                      ....+|+.|+|||.+.+..+ +.++||||+|+++|||++|..||.......   ...             ...+.. ..+
T Consensus       173 ~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~---~~~-------------~i~~~~~~~p  236 (476)
T 2y94_A          173 RTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVPT---LFK-------------KICDGIFYTP  236 (476)
T ss_dssp             CCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSSHH---HHH-------------HHHTTCCCCC
T ss_pred             cccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCHHH---HHH-------------HHhcCCcCCC
Confidence            45578999999999988765 689999999999999999999997552211   111             111111 223


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          227 KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       227 ~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ....+.+.+++.+||+.||.+|| ++|+++
T Consensus       237 ~~~s~~~~~Li~~~L~~dP~~Rpt~~eil~  266 (476)
T 2y94_A          237 QYLNPSVISLLKHMLQVDPMKRATIKDIRE  266 (476)
T ss_dssp             TTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             ccCCHHHHHHHHHHcCCCchhCcCHHHHHh
Confidence            33456789999999999999999 999975

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.2e-38  Score=278.31  Aligned_cols=228  Identities=20%  Similarity=0.210  Sum_probs=179.3

Q ss_pred             ccccceeeecccCC--------CCCeeeccc----------hhhhHHHHhHhhhccccccc-cCCceeeeceeeeecCce
Q 044568            4 TKLSNFYRSSFNAR--------NSPWISRVS----------WTADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVS   64 (257)
Q Consensus         4 ~~~~~~y~~~~~~~--------~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~   64 (257)
                      +.++.||+++....        ..+++|...          +.+|++.+.         ++ .|+||+++.+.+...+..
T Consensus        80 G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~---------~l~~hpnIv~~~~~~~~~~~~  150 (382)
T 3tt0_A           80 GAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMK---------MIGKHKNIINLLGACTQDGPL  150 (382)
T ss_dssp             CSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHH---------HHCCCTTBCCEEEEECSSSSC
T ss_pred             CCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHH---------HhcCCchhhhheeeeccCCce
Confidence            57899999985432        246776643          234444444         55 799999999999999999


Q ss_pred             eEEEeecCCCCHHHHHhccC--------------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCC
Q 044568           65 GKIERPVRNGSLTDIIFCSA--------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF  130 (257)
Q Consensus        65 ~lV~E~~~~gsL~~~l~~~~--------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~  130 (257)
                      ++||||+++|+|.+++....              ...+++.++..++.|++.||.|||++   +++||||||+||+++.+
T Consensus       151 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~  227 (382)
T 3tt0_A          151 YVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTED  227 (382)
T ss_dssp             EEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTT
T ss_pred             EEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCcceEEEcCC
Confidence            99999999999999997532              24599999999999999999999999   99999999999999999


Q ss_pred             CceEEeeecccccCCCC-----cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHH
Q 044568          131 WTAKILDFGLAKLPNED-----FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILT  204 (257)
Q Consensus       131 ~~~kl~dfg~~~~~~~~-----~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~  204 (257)
                      +.+||+|||++......     .....+++.|+|||.+.+..++.++||||||+++|||++ |..||......   . ..
T Consensus       228 ~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~~---~-~~  303 (382)
T 3tt0_A          228 NVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVE---E-LF  303 (382)
T ss_dssp             CCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH---H-HH
T ss_pred             CcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHH---H-HH
Confidence            99999999998754322     233345677999999999999999999999999999999 99999754211   0 00


Q ss_pred             HHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          205 NWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ..         +... .....+...+..+.+++.+||+.||++|| ++|+++.|
T Consensus       304 ~~---------~~~~-~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L  347 (382)
T 3tt0_A          304 KL---------LKEG-HRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDL  347 (382)
T ss_dssp             HH---------HHTT-CCCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             HH---------HHcC-CCCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            00         0000 01123344567899999999999999999 99998864

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=100.00  E-value=9.4e-39  Score=267.47  Aligned_cols=226  Identities=15%  Similarity=0.187  Sum_probs=168.7

Q ss_pred             ccccceeeecccCCC----CCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEe
Q 044568            4 TKLSNFYRSSFNARN----SPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIER   69 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~----~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E   69 (257)
                      +.++.||++....++    .+++|...          +.+|++.+.         ++.|+|++++.+.+ ..+..++|||
T Consensus        26 G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~---------~l~h~~iv~~~~~~-~~~~~~lv~e   95 (281)
T 1mp8_A           26 GQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMR---------QFDHPHIVKLIGVI-TENPVWIIME   95 (281)
T ss_dssp             CSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHH---------TCCCTTBCCEEEEE-CSSSCEEEEE
T ss_pred             cCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHH---------hCCCCccceEEEEE-ccCccEEEEe
Confidence            578999999876543    35666543          233444444         77899999999987 4567899999


Q ss_pred             ecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-
Q 044568           70 PVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-  148 (257)
Q Consensus        70 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-  148 (257)
                      |+++|+|.+++.. ....+++.++..++.|++.||.|||++   +++|+||||+||+++.++.+||+|||++....... 
T Consensus        96 ~~~~~~L~~~l~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  171 (281)
T 1mp8_A           96 LCTLGELRSFLQV-RKYSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTY  171 (281)
T ss_dssp             CCTTEEHHHHHHH-TTTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECC------------
T ss_pred             cCCCCCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecccccHHHEEECCCCCEEECccccccccCcccc
Confidence            9999999999975 455799999999999999999999999   99999999999999999999999999987543322 


Q ss_pred             ---ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCC
Q 044568          149 ---VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTK  224 (257)
Q Consensus       149 ---~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (257)
                         ....+++.|+|||.+....++.++||||||+++|||++ |..||.......   .....          .. .....
T Consensus       172 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~---~~~~i----------~~-~~~~~  237 (281)
T 1mp8_A          172 YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNND---VIGRI----------EN-GERLP  237 (281)
T ss_dssp             -------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG---HHHHH----------HT-TCCCC
T ss_pred             cccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHHH---HHHHH----------Hc-CCCCC
Confidence               23345667999999998889999999999999999997 999997552211   11000          00 00112


Q ss_pred             CCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          225 VDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       225 ~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      .+...++.+.+++.+||+.||++|| +.|+++.|
T Consensus       238 ~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l  271 (281)
T 1mp8_A          238 MPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQL  271 (281)
T ss_dssp             CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence            3445667899999999999999999 99998764

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.5e-39  Score=277.41  Aligned_cols=237  Identities=13%  Similarity=0.053  Sum_probs=181.0

Q ss_pred             ccccceeeecccC---------CCCCeeeccc----hhhhHHHHhHhhhccccccccCCceee---------------ec
Q 044568            4 TKLSNFYRSSFNA---------RNSPWISRVS----WTADIEVLSVAMRGSKCTRIRGGLLLN---------------VP   55 (257)
Q Consensus         4 ~~~~~~y~~~~~~---------~~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~h~~i~~---------------~~   55 (257)
                      +.++.||+++...         +..+++|...    +.+|++.+.         ++.|+|+++               +.
T Consensus        53 G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~~~~~~E~~~l~---------~l~h~niv~~~~~~~~~~~~~i~~~~  123 (352)
T 2jii_A           53 DNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKDGRLFNEQNFFQ---------RAAKPLQVNKWKKLYSTPLLAIPTCM  123 (352)
T ss_dssp             ETTEEEEEEEECC-----------CEEEEEEETTSTHHHHHHHHH---------HHCCHHHHHHHHHHTTCTTCSCCCCC
T ss_pred             CCCeEEEEEeecCCccccccccCceEEEEEecccchHHHHHHHHH---------HhcccchhhhhhhhccCCccCccchh
Confidence            5688999999875         6778888754    567777776         667777776               56


Q ss_pred             eeeee-cCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCC--c
Q 044568           56 VRAKL-TSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW--T  132 (257)
Q Consensus        56 ~~~~~-~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~--~  132 (257)
                      +.+.. .+..++||||+ +++|.+++.......+++.++..++.|++.||.|||++   +++||||||+||+++.++  .
T Consensus       124 ~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NIl~~~~~~~~  199 (352)
T 2jii_A          124 GFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHEN---EYVHGNVTAENIFVDPEDQSQ  199 (352)
T ss_dssp             EEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCGGGEEEETTEEEE
T ss_pred             hccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHEEEcCCCCce
Confidence            66665 67889999999 89999999864357899999999999999999999999   999999999999999988  8


Q ss_pred             eEEeeecccccCCCCc----------ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHH
Q 044568          133 AKILDFGLAKLPNEDF----------VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEII  202 (257)
Q Consensus       133 ~kl~dfg~~~~~~~~~----------~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~  202 (257)
                      +||+|||++.......          ....+|+.|+|||.+.+..++.++||||||+++|||++|+.||.......... 
T Consensus       200 ~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~-  278 (352)
T 2jii_A          200 VTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCLPNTEDI-  278 (352)
T ss_dssp             EEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHH-
T ss_pred             EEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccCCcCHHHH-
Confidence            9999999987543221          33478889999999999899999999999999999999999998653222211 


Q ss_pred             HHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          203 LTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                       .......  ......+..........++.+.+++.+||+.||++|| ++|+++.|
T Consensus       279 -~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L  331 (352)
T 2jii_A          279 -MKQKQKF--VDKPGPFVGPCGHWIRPSETLQKYLKVVMALTYEEKPPYAMLRNNL  331 (352)
T ss_dssp             -HHHHHHH--HHSCCCEECTTSCEECCCHHHHHHHHHHHTCCTTCCCCHHHHHHHH
T ss_pred             -HHHHHhc--cCChhhhhhhccccCCCcHHHHHHHHHHHhCChhhCCCHHHHHHHH
Confidence             1111000  0111111111111123357899999999999999999 99998764

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=9.1e-39  Score=275.63  Aligned_cols=229  Identities=16%  Similarity=0.140  Sum_probs=177.9

Q ss_pred             ccccceeeecccC-CCCCeeeccchhh-----hHHHHhHhhhcccccc-ccCCceeeeceeeeecCceeEEEeecCCCCH
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSWTA-----DIEVLSVAMRGSKCTR-IRGGLLLNVPVRAKLTSVSGKIERPVRNGSL   76 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~-~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL   76 (257)
                      +.++.||+++... ++.+++|...-..     ..+...  .....+.. ..|+||+++.+.+...+..++||||+++|+|
T Consensus        28 G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~--~E~~il~~~~~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L  105 (345)
T 1xjd_A           28 GSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTM--VEKRVLSLAWEHPFLTHMFCTFQTKENLFFVMEYLNGGDL  105 (345)
T ss_dssp             CSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHH--HHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCTTCBH
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHH--HHHHHHHhcCCCCCCCcEEEEEEeCCEEEEEEeCCCCCcH
Confidence            5789999999764 5567788664321     111111  00001113 3799999999999999999999999999999


Q ss_pred             HHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC---CCcccccC
Q 044568           77 TDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN---EDFVIDKR  153 (257)
Q Consensus        77 ~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~---~~~~~~~~  153 (257)
                      .+++..  ...+++.++..++.|++.||.|||++   +|+||||||+||+++.++.+||+|||+++...   .......|
T Consensus       106 ~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~g  180 (345)
T 1xjd_A          106 MYHIQS--CHKFDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCG  180 (345)
T ss_dssp             HHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCS
T ss_pred             HHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCChhhEEECCCCCEEEeEChhhhhcccCCCcccCCCC
Confidence            999973  45799999999999999999999999   99999999999999999999999999987532   23345678


Q ss_pred             CCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHH
Q 044568          154 DKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENL  233 (257)
Q Consensus       154 ~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  233 (257)
                      |+.|+|||.+.+..++.++|+||+|+++|||++|..||.....   ........            .....++....+.+
T Consensus       181 t~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~---~~~~~~i~------------~~~~~~p~~~s~~~  245 (345)
T 1xjd_A          181 TPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDE---EELFHSIR------------MDNPFYPRWLEKEA  245 (345)
T ss_dssp             CGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHH------------HCCCCCCTTSCHHH
T ss_pred             CcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCH---HHHHHHHH------------hCCCCCCcccCHHH
Confidence            9999999999998999999999999999999999999975421   11111110            01112344456788


Q ss_pred             HHHHHHcccCCCCCCC-hH-HHH
Q 044568          234 VKVGLWCVQDEPALRP-MK-CAV  254 (257)
Q Consensus       234 ~~l~~~cl~~~p~~RP-~~-ei~  254 (257)
                      .+++.+||+.||++|| +. |+.
T Consensus       246 ~~li~~lL~~dp~~R~~~~~~i~  268 (345)
T 1xjd_A          246 KDLLVKLFVREPEKRLGVRGDIR  268 (345)
T ss_dssp             HHHHHHHSCSSGGGSBTTBSCGG
T ss_pred             HHHHHHHhcCCHhHcCCChHHHH
Confidence            9999999999999999 86 664

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.5e-38  Score=270.29  Aligned_cols=228  Identities=17%  Similarity=0.118  Sum_probs=172.5

Q ss_pred             ccccceeeeccc-CCCCCeeeccch-----hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHH
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW-----TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLT   77 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~-----~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~   77 (257)
                      +.++.||++... ++..+++|....     ....+.+.  ..........|+|++++.+.+...+..++||||+ +++|.
T Consensus        68 G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~--e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~e~~-~~~L~  144 (311)
T 3p1a_A           68 GSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLA--EVGSHEKVGQHPCCVRLEQAWEEGGILYLQTELC-GPSLQ  144 (311)
T ss_dssp             ETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHH--HHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC-CCBHH
T ss_pred             CCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHH--HHHHHHHhcCCCcEEEEEEEEEeCCEEEEEEecc-CCCHH
Confidence            578999999976 567788886431     11111111  1110111337999999999999999999999999 67999


Q ss_pred             HHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc--ccccCCC
Q 044568           78 DIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF--VIDKRDK  155 (257)
Q Consensus        78 ~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~  155 (257)
                      +++.. ....+++.++..++.|++.||.|||++   +|+||||||+||+++.++.+||+|||++.......  ....+|+
T Consensus       145 ~~~~~-~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~  220 (311)
T 3p1a_A          145 QHCEA-WGASLPEAQVWGYLRDTLLALAHLHSQ---GLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQEGDP  220 (311)
T ss_dssp             HHHHH-HCSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECGGGCEEECCCTTCEECC------CCCCCG
T ss_pred             HHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEECCCCCEEEccceeeeecccCCCCcccCCCc
Confidence            99876 456799999999999999999999999   99999999999999999999999999987544322  3446889


Q ss_pred             CccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHH
Q 044568          156 GYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVK  235 (257)
Q Consensus       156 ~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  235 (257)
                      .|+|||.+.+ .++.++||||||+++|||++|..||...   .   ....+     .     ....+...+....+.+.+
T Consensus       221 ~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~---~---~~~~~-----~-----~~~~~~~~~~~~~~~l~~  283 (311)
T 3p1a_A          221 RYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGG---E---GWQQL-----R-----QGYLPPEFTAGLSSELRS  283 (311)
T ss_dssp             GGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSH---H---HHHHH-----T-----TTCCCHHHHTTSCHHHHH
T ss_pred             cccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCc---c---HHHHH-----h-----ccCCCcccccCCCHHHHH
Confidence            9999998876 6899999999999999999997776532   0   00000     0     000000111223477999


Q ss_pred             HHHHcccCCCCCCC-hHHHHH
Q 044568          236 VGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       236 l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ++.+||+.||++|| ++|+++
T Consensus       284 li~~~L~~dP~~Rpt~~ell~  304 (311)
T 3p1a_A          284 VLVMMLEPDPKLRATAEALLA  304 (311)
T ss_dssp             HHHHHSCSSTTTSCCHHHHHT
T ss_pred             HHHHHcCCChhhCcCHHHHHh
Confidence            99999999999999 999986

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=1.9e-38  Score=275.23  Aligned_cols=227  Identities=17%  Similarity=0.118  Sum_probs=170.8

Q ss_pred             cccccceeeeccc-CCCCCeeeccc--------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCC
Q 044568            3 CTKLSNFYRSSFN-ARNSPWISRVS--------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRN   73 (257)
Q Consensus         3 ~~~~~~~y~~~~~-~~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~   73 (257)
                      .+.++.||+++.. +++.+++|...        +.+|++.+.         +++|+||+++.+.+...+..++||||+++
T Consensus        30 ~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~---------~l~hpniv~~~~~~~~~~~~~lv~e~~~~  100 (361)
T 3uc3_A           30 SGNFGVARLMRDKLTKELVAVKYIERGAAIDENVQREIINHR---------SLRHPNIVRFKEVILTPTHLAIIMEYASG  100 (361)
T ss_dssp             SSTTSSEEEEEETTTCCEEEEEEEESSTTSCHHHHHHHHHHH---------HCCCTTBCCEEEEEECSSEEEEEEECCCS
T ss_pred             cCCCEEEEEEEECCCCcEEEEEEEecCccccHHHHHHHHHHH---------hCCCCCCCcEEEEEeeCCEEEEEEEeCCC
Confidence            3678999999976 55667787654        234554444         78899999999999999999999999999


Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCc--eEEeeecccccCC--CCcc
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT--AKILDFGLAKLPN--EDFV  149 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~--~kl~dfg~~~~~~--~~~~  149 (257)
                      |+|.+++.  ....+++..+..++.|++.||.|||++   +++||||||+||+++.++.  +||+|||+++...  ....
T Consensus       101 ~~L~~~l~--~~~~~~~~~~~~i~~ql~~~L~~LH~~---~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~~~~~  175 (361)
T 3uc3_A          101 GELYERIC--NAGRFSEDEARFFFQQLLSGVSYCHSM---QICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPK  175 (361)
T ss_dssp             CBHHHHHH--HHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCSCCCCGGGEEECSSSSCCEEECCCCCC----------
T ss_pred             CCHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCceEEEeecCccccccccCCCC
Confidence            99999997  345699999999999999999999999   9999999999999987665  9999999987422  2234


Q ss_pred             cccCCCCccCcccccCCCCCcc-ccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC---CC
Q 044568          150 IDKRDKGYMAPECYKRTPISVK-ADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT---KV  225 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~~~~~~~-~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  225 (257)
                      ...+|+.|+|||.+.+..++.+ +||||+|+++|+|++|+.||............            ........   ..
T Consensus       176 ~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~------------~~~~~~~~~~~~~  243 (361)
T 3uc3_A          176 STVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRKT------------IQRILSVKYSIPD  243 (361)
T ss_dssp             -----CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCCHHHH------------HHHHHTTCCCCCT
T ss_pred             CCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHHHHHH------------HHHHhcCCCCCCC
Confidence            5578999999999988877655 89999999999999999999865332211111            01111111   11


Q ss_pred             CHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          226 DKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       226 ~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .....+.+.+++.+||+.||++|| +.|+++
T Consensus       244 ~~~~s~~~~~li~~~L~~dP~~Rps~~ell~  274 (361)
T 3uc3_A          244 DIRISPECCHLISRIFVADPATRISIPEIKT  274 (361)
T ss_dssp             TSCCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             cCCCCHHHHHHHHHHccCChhHCcCHHHHHh
Confidence            122456789999999999999999 999975

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=100.00  E-value=2.7e-38  Score=277.90  Aligned_cols=233  Identities=15%  Similarity=0.111  Sum_probs=173.7

Q ss_pred             ccccceeeecccC-CCCCeeeccc----hhhhHHHHhHhhhccccccccCCceeeeceeeee----cCceeEEEeecCCC
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS----WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL----TSVSGKIERPVRNG   74 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~----~~~~~lV~E~~~~g   74 (257)
                      +.++.||++.... ++.+++|...    +.+|++.+.        ....|+||+++.+.+..    .+..+||||||++|
T Consensus        73 G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~E~~~~~--------~~~~hp~iv~l~~~~~~~~~~~~~~~lv~E~~~gg  144 (400)
T 1nxk_A           73 GINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHW--------RASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGG  144 (400)
T ss_dssp             ETTEEEEEEEETTTCCEEEEEEEECSHHHHHHHHHHH--------HHTTSTTBCCEEEEEEEEETTEEEEEEEEECCCSE
T ss_pred             ccCeEEEEEEECCCCCEEEEEEeCcchhHHHHHHHHH--------HhcCCCCcceEeEEEeecccCCcEEEEEEEeCCCC
Confidence            5688999998664 5567888764    244444432        13469999999998876    56789999999999


Q ss_pred             CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCC---CCceEEeeecccccCCCC--cc
Q 044568           75 SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE---FWTAKILDFGLAKLPNED--FV  149 (257)
Q Consensus        75 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~---~~~~kl~dfg~~~~~~~~--~~  149 (257)
                      +|.+++.......+++.++..++.|++.||.|||++   +|+||||||+||+++.   ++.+||+|||+++.....  ..
T Consensus       145 ~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~~~~~~~  221 (400)
T 1nxk_A          145 ELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLT  221 (400)
T ss_dssp             EHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSTTCCEEECCCTTCEECC------
T ss_pred             cHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCcceEEEecCCCCccEEEEecccccccCCCCccc
Confidence            999999864456799999999999999999999999   9999999999999997   788999999998754432  24


Q ss_pred             cccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhH-HHHHHHHHhhhhhhhhhhhcCCCCCHH
Q 044568          150 IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEI-ILTNWVYKCFINRELNKLVRGTKVDKK  228 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (257)
                      ...+|+.|+|||++.+..++.++|||||||++|||++|..||.......... .......     ..   ...+......
T Consensus       222 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~-----~~---~~~~~~~~~~  293 (400)
T 1nxk_A          222 TPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRM-----GQ---YEFPNPEWSE  293 (400)
T ss_dssp             -----CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHH-----TC---CCCCTTTTTT
T ss_pred             cCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHc-----Cc---ccCCCccccc
Confidence            5577899999999998899999999999999999999999997653322110 1111100     00   0001111123


Q ss_pred             HHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          229 NLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       229 ~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ....+.+++.+||+.||++|| +.|+++
T Consensus       294 ~s~~~~~li~~~L~~dP~~Rpt~~eil~  321 (400)
T 1nxk_A          294 VSEEVKMLIRNLLKTEPTQRMTITEFMN  321 (400)
T ss_dssp             SCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             CCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence            456789999999999999999 999975

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=1.4e-38  Score=267.48  Aligned_cols=235  Identities=18%  Similarity=0.179  Sum_probs=177.7

Q ss_pred             ccccceeeecccCCCCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +.++.||+++..+++.+++|....           .+|++.+.         ++.|+||+++.+.+...+..++||||++
T Consensus        13 G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~~~~~~~lv~e~~~   83 (288)
T 1ob3_A           13 GTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILK---------ELKHSNIVKLYDVIHTKKRLVLVFEHLD   83 (288)
T ss_dssp             ETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGG---------GCCCTTBCCEEEEEECSSCEEEEEECCS
T ss_pred             CCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHH---------hcCCCCEeeeeeEEccCCeEEEEEEecC
Confidence            578999999997788889886542           23444443         7889999999999999999999999997


Q ss_pred             CCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC---Ccc
Q 044568           73 NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE---DFV  149 (257)
Q Consensus        73 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~---~~~  149 (257)
                      + +|.+++.. ....+++.++..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++.....   ...
T Consensus        84 ~-~l~~~~~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~  158 (288)
T 1ob3_A           84 Q-DLKKLLDV-CEGGLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYT  158 (288)
T ss_dssp             E-EHHHHHHT-STTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC------
T ss_pred             C-CHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEeECccccccCccccccc
Confidence            5 99999975 456799999999999999999999999   999999999999999999999999999875332   223


Q ss_pred             cccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhh-----hhhhhh--hc
Q 044568          150 IDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFIN-----RELNKL--VR  221 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~--~~  221 (257)
                      ...+|+.|+|||.+.+. .++.++||||+|+++|||++|..||.......   ............     +.....  .+
T Consensus       159 ~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (288)
T 1ob3_A          159 HEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEAD---QLMRIFRILGTPNSKNWPNVTELPKYD  235 (288)
T ss_dssp             ---CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH---HHHHHHHHHCCCCTTTSTTGGGSTTCC
T ss_pred             cccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH---HHHHHHHHHCCCChhhchhhhcccccc
Confidence            45678899999998764 58999999999999999999999997552111   111111100000     000000  00


Q ss_pred             CC----------CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          222 GT----------KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       222 ~~----------~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +.          .......+.+.+++.+||+.||++|| ++|+++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  280 (288)
T 1ob3_A          236 PNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE  280 (288)
T ss_dssp             TTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             cccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence            00          11123457789999999999999999 999975

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=100.00  E-value=6.3e-39  Score=274.46  Aligned_cols=229  Identities=16%  Similarity=0.185  Sum_probs=160.9

Q ss_pred             ccccceeeecccC-CCCCeeeccch------hhhHHHHhHhhhcccccccc-CCceeeeceeeeecCceeEEEeecCCCC
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW------TADIEVLSVAMRGSKCTRIR-GGLLLNVPVRAKLTSVSGKIERPVRNGS   75 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~------~~~~~~~~~~~~~~~~~~~~-h~~i~~~~~~~~~~~~~~lV~E~~~~gs   75 (257)
                      +.++.||++.... +..+++|...-      .+|++.+.         .+. |+||+++.+.+...+..++||||+++|+
T Consensus        22 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~e~~~l~---------~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~   92 (325)
T 3kn6_A           22 GSFSICRKCVHKKSNQAFAVKIISKRMEANTQKEITALK---------LCEGHPNIVKLHEVFHDQLHTFLVMELLNGGE   92 (325)
T ss_dssp             ETTEEEEEEEETTTCCEEEEEEEEGGGHHHHHHHHHHHH---------HTTTCTTBCCEEEEEECSSEEEEEECCCCSCB
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEChhhhhhHHHHHHHHH---------HhcCCCCeeEEEEEEEcCCEEEEEEEccCCCc
Confidence            5789999999764 56677876542      34444444         444 9999999999999999999999999999


Q ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCC---ceEEeeecccccCCCC---cc
Q 044568           76 LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW---TAKILDFGLAKLPNED---FV  149 (257)
Q Consensus        76 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~---~~kl~dfg~~~~~~~~---~~  149 (257)
                      |.+++.  ....+++.++..++.|++.||.|||++   +++||||||+||+++.++   .+||+|||++......   ..
T Consensus        93 L~~~l~--~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~  167 (325)
T 3kn6_A           93 LFERIK--KKKHFSETEASYIMRKLVSAVSHMHDV---GVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLK  167 (325)
T ss_dssp             HHHHHH--HCSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEC----CEEEECCCTTCEECCC------
T ss_pred             HHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHC---CCeecCCCHHHEEEecCCCcccEEEeccccceecCCCCCccc
Confidence            999998  456799999999999999999999999   999999999999997655   8999999998754322   24


Q ss_pred             cccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC-CCC--
Q 044568          150 IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT-KVD--  226 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--  226 (257)
                      ...+|+.|+|||.+.+..++.++||||||+++|||++|..||...............         ......+. ..+  
T Consensus       168 ~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~---------~~~i~~~~~~~~~~  238 (325)
T 3kn6_A          168 TPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEI---------MKKIKKGDFSFEGE  238 (325)
T ss_dssp             ----------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHH---------HHHHTTTCCCCCSH
T ss_pred             ccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHH---------HHHHHcCCCCCCcc
Confidence            456788999999999989999999999999999999999999765322110000000         11111111 111  


Q ss_pred             --HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          227 --KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       227 --~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                        ...++.+.+++.+||+.||.+|| ++|+++
T Consensus       239 ~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~  270 (325)
T 3kn6_A          239 AWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRY  270 (325)
T ss_dssp             HHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTT
T ss_pred             cccCCCHHHHHHHHHHCCCChhHCCCHHHHhc
Confidence              22457899999999999999999 999864

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2e-38  Score=272.06  Aligned_cols=227  Identities=19%  Similarity=0.262  Sum_probs=174.3

Q ss_pred             ccccceeeecccCCCC-----Ceeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEE
Q 044568            4 TKLSNFYRSSFNARNS-----PWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIE   68 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~-----~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~   68 (257)
                      +.++.||++.......     +++|...          +.+|++.+.         ++.|+||+++.+.+...+..++||
T Consensus        55 G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~~~~~~~lv~  125 (333)
T 1mqb_A           55 GEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMG---------QFSHHNIIRLEGVISKYKPMMIIT  125 (333)
T ss_dssp             CSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHH---------TCCCTTBCCEEEEECSSSSEEEEE
T ss_pred             CCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHH---------hCCCCCCCcEEEEEecCCCcEEEE
Confidence            5789999998765432     6777644          223343443         788999999999999999999999


Q ss_pred             eecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc
Q 044568           69 RPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF  148 (257)
Q Consensus        69 E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~  148 (257)
                      ||+++|+|.+++.. ....+++.++..++.|++.||.|||++   +++|+||||+||+++.++.+||+|||++.......
T Consensus       126 e~~~~~~L~~~l~~-~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~  201 (333)
T 1mqb_A          126 EYMENGALDKFLRE-KDGEFSVLQLVGMLRGIAAGMKYLANM---NYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDP  201 (333)
T ss_dssp             ECCTTEEHHHHHHH-TTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCCCC--------
T ss_pred             eCCCCCcHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChheEEECCCCcEEECCCCcchhhcccc
Confidence            99999999999975 556799999999999999999999999   99999999999999999999999999987543321


Q ss_pred             ------ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc
Q 044568          149 ------VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR  221 (257)
Q Consensus       149 ------~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (257)
                            ....++..|+|||.+.+..++.++||||||+++||+++ |+.||.....   ......          +.... 
T Consensus       202 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~---~~~~~~----------~~~~~-  267 (333)
T 1mqb_A          202 EATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSN---HEVMKA----------INDGF-  267 (333)
T ss_dssp             ---------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH---HHHHHH----------HHTTC-
T ss_pred             ccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCH---HHHHHH----------HHCCC-
Confidence                  12234567999999998899999999999999999999 9999964411   100100          00000 


Q ss_pred             CCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          222 GTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       222 ~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ....+...+..+.+++.+||+.||.+|| +.|+++.|
T Consensus       268 ~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L  304 (333)
T 1mqb_A          268 RLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSIL  304 (333)
T ss_dssp             CCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHH
T ss_pred             cCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            1122344567899999999999999999 99998764

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=100.00  E-value=6.1e-38  Score=271.03  Aligned_cols=223  Identities=18%  Similarity=0.158  Sum_probs=177.5

Q ss_pred             ccccceeeeccc-CCCCCeeeccc--------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEE
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS--------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIE   68 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~--------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~   68 (257)
                      +.++.||++... ++..+++|...              +.+|++.+.         .+.|+||+++.+.+...+..++||
T Consensus        35 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~---------~l~hpnIv~~~~~~~~~~~~~lv~  105 (351)
T 3c0i_A           35 GPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICH---------MLKHPHIVELLETYSSDGMLYMVF  105 (351)
T ss_dssp             CSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHH---------HCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             CCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHH---------hCCCCCCCcEEEEEEeCCEEEEEE
Confidence            568999999865 46667888653              234444444         778999999999999999999999


Q ss_pred             eecCCCCHHHHHhcc--CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCc---eEEeeeccccc
Q 044568           69 RPVRNGSLTDIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT---AKILDFGLAKL  143 (257)
Q Consensus        69 E~~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~---~kl~dfg~~~~  143 (257)
                      |||++|+|.+.+...  ....+++..+..++.|++.||.|||++   +++||||||+||+++.++.   +||+|||++..
T Consensus       106 e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a~~  182 (351)
T 3c0i_A          106 EFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDN---NIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQ  182 (351)
T ss_dssp             ECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECSSSTTCCEEECCCTTCEE
T ss_pred             eCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChHHeEEecCCCCCcEEEecCcceeE
Confidence            999999999888642  344689999999999999999999999   9999999999999976544   99999999876


Q ss_pred             CCCC---cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhh
Q 044568          144 PNED---FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLV  220 (257)
Q Consensus       144 ~~~~---~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (257)
                      ....   .....+|+.|+|||.+.+..++.++||||+|+++|+|++|..||...   .. ......             .
T Consensus       183 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~---~~-~~~~~i-------------~  245 (351)
T 3c0i_A          183 LGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGT---KE-RLFEGI-------------I  245 (351)
T ss_dssp             CCTTSCBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSS---HH-HHHHHH-------------H
T ss_pred             ecCCCeeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCc---HH-HHHHHH-------------H
Confidence            5433   23457899999999999888999999999999999999999999754   11 111111             1


Q ss_pred             cCC-CCC----HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          221 RGT-KVD----KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       221 ~~~-~~~----~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ... ..+    ...++.+.+++.+||+.||++|| +.|+++
T Consensus       246 ~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~  286 (351)
T 3c0i_A          246 KGKYKMNPRQWSHISESAKDLVRRMLMLDPAERITVYEALN  286 (351)
T ss_dssp             HTCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             cCCCCCCccccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence            100 111    12346789999999999999999 999975

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.1e-38  Score=294.26  Aligned_cols=226  Identities=15%  Similarity=0.229  Sum_probs=177.8

Q ss_pred             ccccceeeecccC---CCCCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFNA---RNSPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~~---~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.|+.||+|....   +..+++|...          +.+|++++.         ++.|+||+++.+.+.. +..++||||
T Consensus       347 G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~---------~l~hpniv~l~~~~~~-~~~~lv~E~  416 (613)
T 2ozo_A          347 GNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMH---------QLDNPYIVRLIGVCQA-EALMLVMEM  416 (613)
T ss_dssp             CSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHT---------TCCCTTBCCEEEEEES-SSEEEEEEC
T ss_pred             CCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHH---------hCCCCCEeeEEEEecc-CCeEEEEEe
Confidence            5789999998753   3346777643          334555554         7899999999999875 668999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc--
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF--  148 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~--  148 (257)
                      +++|+|.+++.. ....+++.++..++.|++.||.|||++   +|+||||||+|||++.++.+||+|||+++......  
T Consensus       417 ~~~g~L~~~l~~-~~~~l~~~~~~~i~~qi~~~L~~LH~~---~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~  492 (613)
T 2ozo_A          417 AGGGPLHKFLVG-KREEIPVSNVAELLHQVSMGMKYLEEK---NFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSY  492 (613)
T ss_dssp             CTTCBHHHHHTT-CTTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCSTTTTCC-----
T ss_pred             CCCCcHHHHHhh-ccCCCCHHHHHHHHHHHHHHHHHHHHC---CEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCce
Confidence            999999999975 456799999999999999999999999   99999999999999999999999999997643221  


Q ss_pred             ----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC
Q 044568          149 ----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  223 (257)
Q Consensus       149 ----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (257)
                          ....++..|+|||++....++.++||||||+++|||++ |+.||.......    ....         +... ...
T Consensus       493 ~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~----~~~~---------i~~~-~~~  558 (613)
T 2ozo_A          493 YTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPE----VMAF---------IEQG-KRM  558 (613)
T ss_dssp             ---------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSHH----HHHH---------HHTT-CCC
T ss_pred             eeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHHH----HHHH---------HHcC-CCC
Confidence                12234567999999998899999999999999999998 999997652211    1000         0000 011


Q ss_pred             CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          224 KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       224 ~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ..+..++..+.+++.+||+.||++|| +.++++.|
T Consensus       559 ~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L  593 (613)
T 2ozo_A          559 ECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRM  593 (613)
T ss_dssp             CCCTTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence            34455678899999999999999999 99998764

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=2.2e-38  Score=273.99  Aligned_cols=226  Identities=17%  Similarity=0.154  Sum_probs=175.7

Q ss_pred             ccccceeeecccC-CCCCeeeccchhhhHH---HHhHhhhccccccc-cCCceeeeceeeeecCceeEEEeecCCCCHHH
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSWTADIE---VLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVSGKIERPVRNGSLTD   78 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~   78 (257)
                      +.++.||+++... +..+++|...-....+   ..........+..+ .|++++++.+.+...+..++||||+++|+|.+
T Consensus        31 G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~  110 (353)
T 2i0e_A           31 GSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMY  110 (353)
T ss_dssp             ETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEEEEEECCCSCBHHH
T ss_pred             CCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEEEEEeCCCCCcHHH
Confidence            5688999999765 4567788655321110   00000000011133 69999999999999999999999999999999


Q ss_pred             HHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC---CCcccccCCC
Q 044568           79 IIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN---EDFVIDKRDK  155 (257)
Q Consensus        79 ~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~---~~~~~~~~~~  155 (257)
                      ++..  ...+++..+..++.|++.||.|||++   +|+||||||+||+++.++.+||+|||++....   .......||+
T Consensus       111 ~l~~--~~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~  185 (353)
T 2i0e_A          111 HIQQ--VGRFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKTFCGTP  185 (353)
T ss_dssp             HHHH--HSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCG
T ss_pred             HHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEEcCCCcEEEEeCCcccccccCCcccccccCCc
Confidence            9973  45699999999999999999999999   99999999999999999999999999987532   2334567899


Q ss_pred             CccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc-CCCCCHHHHHHHH
Q 044568          156 GYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR-GTKVDKKNLENLV  234 (257)
Q Consensus       156 ~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~  234 (257)
                      .|+|||.+.+..++.++|+||||+++|||++|+.||.....   .....             .+.. ...++......+.
T Consensus       186 ~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~---~~~~~-------------~i~~~~~~~p~~~s~~~~  249 (353)
T 2i0e_A          186 DYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE---DELFQ-------------SIMEHNVAYPKSMSKEAV  249 (353)
T ss_dssp             GGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHH-------------HHHHCCCCCCTTSCHHHH
T ss_pred             cccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCH---HHHHH-------------HHHhCCCCCCCCCCHHHH
Confidence            99999999998999999999999999999999999975421   11111             1111 1134445667899


Q ss_pred             HHHHHcccCCCCCCC-h
Q 044568          235 KVGLWCVQDEPALRP-M  250 (257)
Q Consensus       235 ~l~~~cl~~~p~~RP-~  250 (257)
                      +++.+||+.||.+|| +
T Consensus       250 ~li~~lL~~dP~~R~~~  266 (353)
T 2i0e_A          250 AICKGLMTKHPGKRLGC  266 (353)
T ss_dssp             HHHHHHTCSCTTSCTTC
T ss_pred             HHHHHHhhcCHHHcCCC
Confidence            999999999999999 6

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=100.00  E-value=7e-39  Score=276.90  Aligned_cols=229  Identities=19%  Similarity=0.220  Sum_probs=177.3

Q ss_pred             ccccceeeecc------cCCCCCeeeccc----------hhhhHHHHhHhhhccccccc-cCCceeeeceeeeecC-cee
Q 044568            4 TKLSNFYRSSF------NARNSPWISRVS----------WTADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTS-VSG   65 (257)
Q Consensus         4 ~~~~~~y~~~~------~~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~-~~~   65 (257)
                      +.++.||+++.      .++..+++|...          +.+|++.+.         ++ .|+||+++.+.+...+ ..+
T Consensus        33 G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~---------~l~~hpniv~~~~~~~~~~~~~~  103 (359)
T 3vhe_A           33 GAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILI---------HIGHHLNVVNLLGACTKPGGPLM  103 (359)
T ss_dssp             CSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHH---------HHCCCTTBCCEEEEECSTTSCCE
T ss_pred             CCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHH---------hhcCCcceeeeeeeeecCCCceE
Confidence            57899999963      344567777653          334444444         55 6899999999988755 489


Q ss_pred             EEEeecCCCCHHHHHhccCC------------------------------------------------------------
Q 044568           66 KIERPVRNGSLTDIIFCSAE------------------------------------------------------------   85 (257)
Q Consensus        66 lV~E~~~~gsL~~~l~~~~~------------------------------------------------------------   85 (257)
                      +||||+++|+|.+++.....                                                            
T Consensus       104 iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (359)
T 3vhe_A          104 VIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAPE  183 (359)
T ss_dssp             EEEECCTTEEHHHHHHTTTTSBCSCC------------------------------------------------------
T ss_pred             EEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccccccchhhhccccc
Confidence            99999999999999975321                                                            


Q ss_pred             ----CCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-----ccccCCCC
Q 044568           86 ----RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-----VIDKRDKG  156 (257)
Q Consensus        86 ----~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-----~~~~~~~~  156 (257)
                          ..+++..+..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++.......     ....+|+.
T Consensus       184 ~~~~~~l~~~~~~~~~~ql~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~  260 (359)
T 3vhe_A          184 DLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLK  260 (359)
T ss_dssp             CTTTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTTCEEC--CEECGG
T ss_pred             chhccccCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEEcCCCcEEEEeccceeeecccccchhccccCCCce
Confidence                1289999999999999999999999   99999999999999999999999999987543221     23456778


Q ss_pred             ccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHH
Q 044568          157 YMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVK  235 (257)
Q Consensus       157 ~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  235 (257)
                      |+|||.+.+..++.++||||||+++|||++ |..||.........   ...         ... ......+....+.+.+
T Consensus       261 y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~---~~~---------~~~-~~~~~~~~~~~~~l~~  327 (359)
T 3vhe_A          261 WMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEF---CRR---------LKE-GTRMRAPDYTTPEMYQ  327 (359)
T ss_dssp             GCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHH---HHH---------HHH-TCCCCCCTTCCHHHHH
T ss_pred             eEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHHH---HHH---------HHc-CCCCCCCCCCCHHHHH
Confidence            999999998899999999999999999998 99999765332211   000         000 0111233445577999


Q ss_pred             HHHHcccCCCCCCC-hHHHHHhC
Q 044568          236 VGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       236 l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ++.+||+.||.+|| ++|+++.|
T Consensus       328 li~~~l~~dP~~Rps~~ell~~L  350 (359)
T 3vhe_A          328 TMLDCWHGEPSQRPTFSELVEHL  350 (359)
T ss_dssp             HHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             HHHHHccCChhhCCCHHHHHHHH
Confidence            99999999999999 99998864

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=100.00  E-value=2.3e-38  Score=273.55  Aligned_cols=228  Identities=19%  Similarity=0.209  Sum_probs=171.7

Q ss_pred             ccccceeeecccC-CCCCeeeccc-------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCC
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS-------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGS   75 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~-------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gs   75 (257)
                      +.++.||+++... +..+++|...       +.+|++.+.         ++.|+||+++.+.+...+..++||||+++|+
T Consensus        64 G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~---------~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~  134 (349)
T 2w4o_A           64 GATSIVYRCKQKGTQKPYALKVLKKTVDKKIVRTEIGVLL---------RLSHPNIIKLKEIFETPTEISLVLELVTGGE  134 (349)
T ss_dssp             CSSEEEEEEEETTTCCEEEEEEEEC----------CHHHH---------HCCCTTBCCEEEEEECSSEEEEEECCCCSCB
T ss_pred             CCCEEEEEEEECCCCcEEEEEEeccchhHHHHHHHHHHHH---------hCCCCCCcceeeeEecCCeEEEEEEeCCCCC
Confidence            5689999999775 4557777654       334555555         7889999999999999999999999999999


Q ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCC---CCceEEeeecccccCCCC--ccc
Q 044568           76 LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE---FWTAKILDFGLAKLPNED--FVI  150 (257)
Q Consensus        76 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~---~~~~kl~dfg~~~~~~~~--~~~  150 (257)
                      |.+++.  ....+++.++..++.|++.||.|||++   +++||||||+||+++.   ++.+||+|||++......  ...
T Consensus       135 L~~~l~--~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~  209 (349)
T 2w4o_A          135 LFDRIV--EKGYYSERDAADAVKQILEAVAYLHEN---GIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMKT  209 (349)
T ss_dssp             HHHHHT--TCSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESSSSTTCCEEECCCC-------------
T ss_pred             HHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCcccEEEecCCCCCCEEEccCccccccCccccccc
Confidence            999997  456799999999999999999999999   9999999999999975   789999999998754332  234


Q ss_pred             ccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHH
Q 044568          151 DKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNL  230 (257)
Q Consensus       151 ~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (257)
                      ..+|+.|+|||.+.+..++.++||||||+++|||++|..||.......  .......     ...   ...........+
T Consensus       210 ~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~--~~~~~i~-----~~~---~~~~~~~~~~~~  279 (349)
T 2w4o_A          210 VCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQ--FMFRRIL-----NCE---YYFISPWWDEVS  279 (349)
T ss_dssp             ---CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHH--HHHHHHH-----TTC---CCCCTTTTTTSC
T ss_pred             ccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccH--HHHHHHH-----hCC---CccCCchhhhCC
Confidence            568899999999999889999999999999999999999997542211  1111110     000   000111223455


Q ss_pred             HHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          231 ENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       231 ~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ..+.+++.+||+.||++|| +.|+++
T Consensus       280 ~~~~~li~~~L~~dP~~Rpt~~e~l~  305 (349)
T 2w4o_A          280 LNAKDLVRKLIVLDPKKRLTTFQALQ  305 (349)
T ss_dssp             HHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHHHccCChhhCcCHHHHhc
Confidence            7789999999999999999 999986

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=100.00  E-value=8.2e-38  Score=265.05  Aligned_cols=239  Identities=15%  Similarity=0.115  Sum_probs=180.9

Q ss_pred             ccccceeeecc-cCCCCCeeeccc--------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecC-----c
Q 044568            4 TKLSNFYRSSF-NARNSPWISRVS--------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTS-----V   63 (257)
Q Consensus         4 ~~~~~~y~~~~-~~~~~~~i~~~~--------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~-----~   63 (257)
                      +.++.||+++. .+++.+++|...              +.+|++.+.      .+..+.|+|++++.+.+....     .
T Consensus        20 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~------~l~~~~h~niv~~~~~~~~~~~~~~~~   93 (308)
T 3g33_A           20 GAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLR------RLEAFEHPNVVRLMDVCATSRTDREIK   93 (308)
T ss_dssp             SSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHH------HHHHHCCTTBCCEEEEEEECCSSSEEE
T ss_pred             CCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHH------HHhhcCCCCeEEeeeeeeccCCCCcee
Confidence            67899999996 455667888654              335555544      233556999999999988765     5


Q ss_pred             eeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeeccccc
Q 044568           64 SGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKL  143 (257)
Q Consensus        64 ~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~  143 (257)
                      .++||||+. |+|.+++.......+++.++..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++..
T Consensus        94 ~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~  169 (308)
T 3g33_A           94 VTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHAN---CIVHRDLKPENILVTSGGTVKLADFGLARI  169 (308)
T ss_dssp             EEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCTTTEEECTTSCEEECSCSCTTT
T ss_pred             EEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCEEEeeCccccc
Confidence            799999997 6999999865555699999999999999999999999   999999999999999999999999999875


Q ss_pred             CCC--CcccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhh--hhh--
Q 044568          144 PNE--DFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINR--ELN--  217 (257)
Q Consensus       144 ~~~--~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~--~~~--  217 (257)
                      ...  ......+|+.|+|||.+.+..++.++||||||+++|||++|+.||.......   .............  .+.  
T Consensus       170 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~---~~~~i~~~~~~~~~~~~~~~  246 (308)
T 3g33_A          170 YSYQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEAD---QLGKIFDLIGLPPEDDWPRD  246 (308)
T ss_dssp             STTCCCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHH---HHHHHHHHHCCCCTTTSCSS
T ss_pred             cCCCcccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHH---HHHHHHHHhCCCChhhccch
Confidence            432  2345578999999999999999999999999999999999999997552211   1111111100000  000  


Q ss_pred             -----hhhcCC------CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          218 -----KLVRGT------KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       218 -----~~~~~~------~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                           ......      ....+..+.+.+++.+||+.||++|| +.|+++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  296 (308)
T 3g33_A          247 VSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQ  296 (308)
T ss_dssp             CSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             hhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhc
Confidence                 000000      01123447789999999999999999 999985

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=1.7e-38  Score=276.65  Aligned_cols=228  Identities=18%  Similarity=0.158  Sum_probs=176.9

Q ss_pred             ccccceeeeccc-CCCCCeeeccc---------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCC
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS---------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRN   73 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~   73 (257)
                      +.++.||+++.. ++..+++|...         +.+|++.+.         ++.|+||+++.+.+...+..+|||||+++
T Consensus       100 G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~---------~l~hpnIv~~~~~~~~~~~~~lv~E~~~~  170 (373)
T 2x4f_A          100 GRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMN---------QLDHANLIQLYDAFESKNDIVLVMEYVDG  170 (373)
T ss_dssp             ----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHT---------TCCCTTBCCEEEEEECSSEEEEEEECCTT
T ss_pred             CcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHH---------hCCCCCCCeEEEEEEECCEEEEEEeCCCC
Confidence            568999999865 46667777644         234444444         78999999999999999999999999999


Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceee--CCCCceEEeeecccccCCCC--cc
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM--DEFWTAKILDFGLAKLPNED--FV  149 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~--~~~~~~kl~dfg~~~~~~~~--~~  149 (257)
                      |+|.+++.. ....+++.++..++.|++.||.|||++   +|+||||||+||++  +.++.+||+|||++......  ..
T Consensus       171 ~~L~~~l~~-~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~~~  246 (373)
T 2x4f_A          171 GELFDRIID-ESYNLTELDTILFMKQICEGIRHMHQM---YILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREKLK  246 (373)
T ss_dssp             CEEHHHHHH-TGGGCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCBCC
T ss_pred             CcHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEEecCCCCcEEEEeCCCceecCCccccc
Confidence            999999975 456799999999999999999999999   99999999999999  56778999999998865432  23


Q ss_pred             cccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHH
Q 044568          150 IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKN  229 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (257)
                      ...+|+.|+|||.+....++.++||||||+++|||++|..||.....   ...+..+....+.        .+.......
T Consensus       247 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~---~~~~~~i~~~~~~--------~~~~~~~~~  315 (373)
T 2x4f_A          247 VNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDND---AETLNNILACRWD--------LEDEEFQDI  315 (373)
T ss_dssp             CCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSH---HHHHHHHHHTCCC--------SCSGGGTTS
T ss_pred             cccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCH---HHHHHHHHhccCC--------CChhhhccC
Confidence            44689999999999888899999999999999999999999975521   1111111110000        000111234


Q ss_pred             HHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          230 LENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       230 ~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .+.+.+++.+||+.||.+|| +.|+++
T Consensus       316 ~~~~~~li~~~L~~dp~~Rps~~e~l~  342 (373)
T 2x4f_A          316 SEEAKEFISKLLIKEKSWRISASEALK  342 (373)
T ss_dssp             CHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             CHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            56789999999999999999 999986

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=100.00  E-value=9.3e-39  Score=268.00  Aligned_cols=228  Identities=18%  Similarity=0.203  Sum_probs=183.8

Q ss_pred             ccccceeeecccC-CCCCeeeccc--------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCC
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS--------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNG   74 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~g   74 (257)
                      +.++.||++.... +..+++|...        +.+|++.+.         ++.|+|++++.+.+...+..++||||++++
T Consensus        24 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~---------~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~   94 (288)
T 3kfa_A           24 GQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMK---------EIKHPNLVQLLGVCTREPPFYIITEFMTYG   94 (288)
T ss_dssp             GTTCSEEEEEEGGGTEEEEEEEECSCSTHHHHHHHHHHHHH---------HCCCTTBCCEEEEECSSSSEEEEEECCTTE
T ss_pred             CCceeEEEeEecCCCEEEEEEecCcCHHHHHHHHHHHHHHH---------hCCCCCEeeEEEEEccCCCEEEEEEcCCCC
Confidence            6789999999776 4556777543        345555555         788999999999999999999999999999


Q ss_pred             CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc----cc
Q 044568           75 SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF----VI  150 (257)
Q Consensus        75 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~----~~  150 (257)
                      +|.+++.......+++..+..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||.+.......    ..
T Consensus        95 ~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~  171 (288)
T 3kfa_A           95 NLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAG  171 (288)
T ss_dssp             EHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHH---TCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSSSEEETT
T ss_pred             cHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHC---CccCCCCCcceEEEcCCCCEEEccCccceeccCCccccccC
Confidence            999999875667799999999999999999999999   99999999999999999999999999987654332    22


Q ss_pred             ccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHH
Q 044568          151 DKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKN  229 (257)
Q Consensus       151 ~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (257)
                      ..+++.|+|||.+.+..++.++||||||+++|+|++ |..||........    ...         .... .....+...
T Consensus       172 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~~----~~~---------~~~~-~~~~~~~~~  237 (288)
T 3kfa_A          172 AKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQV----YEL---------LEKD-YRMERPEGC  237 (288)
T ss_dssp             EEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGH----HHH---------HHTT-CCCCCCTTC
T ss_pred             CccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHH----HHH---------Hhcc-CCCCCCCCC
Confidence            344667999999998889999999999999999999 9999975422110    000         0000 011234445


Q ss_pred             HHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          230 LENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       230 ~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ++.+.+++.+||+.||.+|| ++|+++.|
T Consensus       238 ~~~l~~li~~~l~~dp~~Rps~~~~~~~l  266 (288)
T 3kfa_A          238 PEKVYELMRACWQWNPSDRPSFAEIHQAF  266 (288)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHhCCChhhCcCHHHHHHHH
Confidence            67899999999999999999 99998864

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=100.00  E-value=9.1e-39  Score=271.08  Aligned_cols=228  Identities=19%  Similarity=0.242  Sum_probs=179.1

Q ss_pred             ccccceeeeccc------CCCCCeeeccch----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEE
Q 044568            4 TKLSNFYRSSFN------ARNSPWISRVSW----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~~------~~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV   67 (257)
                      +.++.||+++..      ++..+++|....          .+|++.+.         ++.|+||+++.+.+...+..++|
T Consensus        34 G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~---------~l~hp~iv~~~~~~~~~~~~~lv  104 (314)
T 2ivs_A           34 GEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLK---------QVNHPHVIKLYGACSQDGPLLLI  104 (314)
T ss_dssp             CSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHT---------TCCCTTBCCEEEEECSSSSCEEE
T ss_pred             cCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHh---------hCCCCceeeEEEEEecCCceEEE
Confidence            578899999752      335567776542          23333333         78899999999999999999999


Q ss_pred             EeecCCCCHHHHHhccCC----------------------CCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCce
Q 044568           68 ERPVRNGSLTDIIFCSAE----------------------RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNI  125 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~~----------------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~ni  125 (257)
                      |||+++|+|.+++.....                      ..+++.++..++.|++.||.|||++   +++|+||||+||
T Consensus       105 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dikp~NI  181 (314)
T 2ivs_A          105 VEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEM---KLVHRDLAARNI  181 (314)
T ss_dssp             EECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGE
T ss_pred             EeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHC---CCcccccchheE
Confidence            999999999999975322                      3488999999999999999999999   999999999999


Q ss_pred             eeCCCCceEEeeecccccCCCCc-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChh
Q 044568          126 LMDEFWTAKILDFGLAKLPNEDF-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPE  199 (257)
Q Consensus       126 l~~~~~~~kl~dfg~~~~~~~~~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~  199 (257)
                      +++.++.+||+|||++.......     ....+++.|+|||.+.+..++.++||||||+++|||++ |..||....... 
T Consensus       182 li~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~-  260 (314)
T 2ivs_A          182 LVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPER-  260 (314)
T ss_dssp             EEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG-
T ss_pred             EEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH-
Confidence            99999999999999987543322     23345667999999988889999999999999999999 999997552211 


Q ss_pred             hHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          200 EIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                        .. ..         ... ......+...++.+.+++.+||+.||++|| +.|+++.|
T Consensus       261 --~~-~~---------~~~-~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l  306 (314)
T 2ivs_A          261 --LF-NL---------LKT-GHRMERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKDL  306 (314)
T ss_dssp             --HH-HH---------HHT-TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             --HH-HH---------hhc-CCcCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence              00 00         000 001123445567899999999999999999 99998764

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=100.00  E-value=6e-38  Score=263.91  Aligned_cols=233  Identities=16%  Similarity=0.120  Sum_probs=177.6

Q ss_pred             ccccceeeecc-cCCCCCeeeccc-------hhhhHHHHhHhhhccccccccCCceeeeceee-eecCceeEEEeecCCC
Q 044568            4 TKLSNFYRSSF-NARNSPWISRVS-------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRA-KLTSVSGKIERPVRNG   74 (257)
Q Consensus         4 ~~~~~~y~~~~-~~~~~~~i~~~~-------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~-~~~~~~~lV~E~~~~g   74 (257)
                      +.++.||+++. .++..+++|...       +.+|++.+.         .+.|++++.....+ ...+..++||||+ ++
T Consensus        20 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~l~---------~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~~   89 (296)
T 3uzp_A           20 GSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYK---------MMQGGVGIPTIRWCGAEGDYNVMVMELL-GP   89 (296)
T ss_dssp             ETTEEEEEEEETTTTEEEEEEEEESCSSCCHHHHHHHHHH---------HHTTSTTCCCEEEEEEETTEEEEEEECC-CC
T ss_pred             CCCeEEEEEEEcCCCcEEEEEEecCCcchhHHHHHHHHHH---------HhhcCCCCCccccccCCCCceEEEEEec-CC
Confidence            56889999995 566677787533       455666555         66677766555544 5667789999999 89


Q ss_pred             CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceee---CCCCceEEeeecccccCCCC----
Q 044568           75 SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKILDFGLAKLPNED----  147 (257)
Q Consensus        75 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~---~~~~~~kl~dfg~~~~~~~~----  147 (257)
                      +|.+++.. ....+++.++..++.|++.||.|||++   +++||||||+||++   +.++.+||+|||.+......    
T Consensus        90 ~L~~~~~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~  165 (296)
T 3uzp_A           90 SLEDLFNF-CSRKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQ  165 (296)
T ss_dssp             BHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCC
T ss_pred             CHHHHHHh-hccCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHeEEecCCCCCeEEEeeCCCccccccccccc
Confidence            99999975 456799999999999999999999999   99999999999999   47889999999998754332    


Q ss_pred             ------cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc
Q 044568          148 ------FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR  221 (257)
Q Consensus       148 ------~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (257)
                            .....+|+.|+|||.+.+..++.++||||||+++|||++|+.||......................+ ...   
T Consensus       166 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~-~~~---  241 (296)
T 3uzp_A          166 HIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTP-IEV---  241 (296)
T ss_dssp             BCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSC-HHH---
T ss_pred             ccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccCCc-hHH---
Confidence                  1345688899999999998999999999999999999999999986533322222222211111100 000   


Q ss_pred             CCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          222 GTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       222 ~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                         .....++.+.+++.+||+.||.+|| ++|+++.|
T Consensus       242 ---~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l  275 (296)
T 3uzp_A          242 ---LCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLF  275 (296)
T ss_dssp             ---HTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHH
T ss_pred             ---HHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHH
Confidence               1122346799999999999999999 99998864

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=100.00  E-value=1.4e-38  Score=267.60  Aligned_cols=229  Identities=23%  Similarity=0.318  Sum_probs=169.0

Q ss_pred             ccccceeeecccCCCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +.++.||+++...  .+++|...           +.+|++.+.         ++.|+|++++.++. ..+..++||||++
T Consensus        35 G~~g~Vy~~~~~~--~vavK~~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~-~~~~~~lv~e~~~  102 (289)
T 3og7_A           35 GSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLR---------KTRHVNILLFMGYS-TAPQLAIVTQWCE  102 (289)
T ss_dssp             CSSEEEEEEESSS--EEEEEEESCSSCCHHHHHHHHHHHHHHT---------TCCCTTBCCEEEEE-CSSSCEEEEECCC
T ss_pred             CCCeEEEEEEEcC--ceEEEEEeccCCCHHHHHHHHHHHHHHH---------hCCCCcEEEEEeec-cCCccEEEEEecC
Confidence            5789999998765  37776543           234444444         88899999998854 5667899999999


Q ss_pred             CCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC-----C
Q 044568           73 NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE-----D  147 (257)
Q Consensus        73 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~-----~  147 (257)
                      +++|.+++.. ....+++.++..++.|++.||.|||++   +++|+||||+||+++.++.++|+|||++.....     .
T Consensus       103 ~~~L~~~l~~-~~~~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~  178 (289)
T 3og7_A          103 GSSLYHHLHA-SETKFEMKKLIDIARQTARGMDYLHAK---SIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQ  178 (289)
T ss_dssp             EEEHHHHHTT-C---CCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTEEEECCCC-------------
T ss_pred             CCcHHHHHhh-ccCCCCHHHHHHHHHHHHHHHHHHHhC---CcccccCccceEEECCCCCEEEccceecccccccccccc
Confidence            9999999975 566799999999999999999999999   999999999999999999999999999875332     1


Q ss_pred             cccccCCCCccCccccc---CCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCC
Q 044568          148 FVIDKRDKGYMAPECYK---RTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTK  224 (257)
Q Consensus       148 ~~~~~~~~~~~aPE~~~---~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (257)
                      .....+|+.|+|||.+.   ...++.++||||||+++|||++|+.||.......   ........    ....  .+...
T Consensus       179 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~---~~~~~~~~----~~~~--~~~~~  249 (289)
T 3og7_A          179 FEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRD---QIIEMVGR----GSLS--PDLSK  249 (289)
T ss_dssp             -----CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHH---HHHHHHHH----TSCC--CCTTS
T ss_pred             ccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHH---HHHHHhcc----cccC--cchhh
Confidence            23446789999999986   5668899999999999999999999997552221   11111111    0000  00112


Q ss_pred             CCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          225 VDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       225 ~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      .....++.+.+++.+||+.||.+|| ++|+++.|
T Consensus       250 ~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L  283 (289)
T 3og7_A          250 VRSNCPKRMKRLMAECLKKKRDERPSFPRILAEI  283 (289)
T ss_dssp             SCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             ccccCCHHHHHHHHHHccCChhhCCCHHHHHHHH
Confidence            3345567899999999999999999 99999864

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=100.00  E-value=3.8e-38  Score=263.12  Aligned_cols=223  Identities=19%  Similarity=0.236  Sum_probs=161.2

Q ss_pred             ccccceeeecc-cCCCCCeeeccch------------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSF-NARNSPWISRVSW------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~-~~~~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||+++. .++..+++|...-            .+|++.+.         ++.|+|++++.+.+...+..++||||
T Consensus        22 G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~---------~l~h~~i~~~~~~~~~~~~~~lv~e~   92 (278)
T 3cok_A           22 GSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHC---------QLKHPSILELYNYFEDSNYVYLVLEM   92 (278)
T ss_dssp             CSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHT---------TBCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             CCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHH---------hCCCCCeEeEEEEEccCCeEEEEEec
Confidence            56889999986 4566778887542            23333333         78899999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---  147 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---  147 (257)
                      +++++|.+++.. ....+++.++..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||.+......   
T Consensus        93 ~~~~~L~~~l~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~  168 (278)
T 3cok_A           93 CHNGEMNRYLKN-RVKPFSENEARHFMHQIITGMLYLHSH---GILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEK  168 (278)
T ss_dssp             CTTEEHHHHHHT-CSSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSSCCGGGEEECTTCCEEECCCTTCEECC-----
T ss_pred             CCCCcHHHHHhh-ccCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEEeecceeeccCCCCc
Confidence            999999999985 456799999999999999999999999   9999999999999999999999999998754322   


Q ss_pred             cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhh-cCCCCC
Q 044568          148 FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLV-RGTKVD  226 (257)
Q Consensus       148 ~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  226 (257)
                      .....+++.|+|||.+.+..++.++|+||||+++|||++|+.||........                ..... .....+
T Consensus       169 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~----------------~~~~~~~~~~~~  232 (278)
T 3cok_A          169 HYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNT----------------LNKVVLADYEMP  232 (278)
T ss_dssp             -----------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC---------------------CCSSCCCCC
T ss_pred             ceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHH----------------HHHHhhcccCCc
Confidence            2345678899999999988889999999999999999999999975532210                00000 111223


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          227 KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       227 ~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ......+.+++.+||+.||++|| ++|+++
T Consensus       233 ~~~~~~~~~li~~~l~~dp~~Rps~~~~l~  262 (278)
T 3cok_A          233 SFLSIEAKDLIHQLLRRNPADRLSLSSVLD  262 (278)
T ss_dssp             TTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             cccCHHHHHHHHHHcccCHhhCCCHHHHhc
Confidence            34456789999999999999999 999975

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=4.2e-38  Score=275.40  Aligned_cols=228  Identities=19%  Similarity=0.183  Sum_probs=179.8

Q ss_pred             ccccceeeecccC-CCCCeeeccc---------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCC
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS---------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRN   73 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~   73 (257)
                      +.++.||++.... +..+++|...         +.+|++.+.         .+.|+||+++.+.+...+..++||||+++
T Consensus        62 G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~---------~l~hpnIv~~~~~~~~~~~~~lv~E~~~g  132 (387)
T 1kob_A           62 GAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMN---------QLHHPKLINLHDAFEDKYEMVLILEFLSG  132 (387)
T ss_dssp             ETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHT---------TCCSTTBCCEEEEEECSSEEEEEEECCCC
T ss_pred             CCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHH---------hCCCcCCCeEEEEEEeCCEEEEEEEcCCC
Confidence            5689999998765 4455666543         234444444         78899999999999999999999999999


Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCC--CCceEEeeecccccCCCC--cc
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE--FWTAKILDFGLAKLPNED--FV  149 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~--~~~~kl~dfg~~~~~~~~--~~  149 (257)
                      |+|.+++.. ....+++.++..++.|++.||.|||++   +++||||||+||+++.  .+.+||+|||++......  ..
T Consensus       133 g~L~~~l~~-~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~~  208 (387)
T 1kob_A          133 GELFDRIAA-EDYKMSEAEVINYMRQACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVK  208 (387)
T ss_dssp             CBHHHHTTC-TTCCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCEE
T ss_pred             CcHHHHHHh-hcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccchHHeEEecCCCCceEEEecccceecCCCccee
Confidence            999999975 455799999999999999999999999   9999999999999974  467999999998865432  24


Q ss_pred             cccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHH
Q 044568          150 IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKN  229 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (257)
                      ...+|+.|+|||.+.+..++.++||||||+++|||++|..||.....   .........     .   ............
T Consensus       209 ~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~---~~~~~~i~~-----~---~~~~~~~~~~~~  277 (387)
T 1kob_A          209 VTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDD---LETLQNVKR-----C---DWEFDEDAFSSV  277 (387)
T ss_dssp             EECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSH---HHHHHHHHH-----C---CCCCCSSTTTTS
T ss_pred             eeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCH---HHHHHHHHh-----C---CCCCCccccccC
Confidence            45789999999999988899999999999999999999999975421   111111100     0   000011122334


Q ss_pred             HHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          230 LENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       230 ~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +..+.+++.+||+.||++|| +.|+++
T Consensus       278 s~~~~~li~~~L~~dP~~Rpt~~ell~  304 (387)
T 1kob_A          278 SPEAKDFIKNLLQKEPRKRLTVHDALE  304 (387)
T ss_dssp             CHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             CHHHHHHHHHHcCCChhHCcCHHHHhh
Confidence            57789999999999999999 999986

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=100.00  E-value=3.8e-39  Score=293.11  Aligned_cols=227  Identities=22%  Similarity=0.298  Sum_probs=182.7

Q ss_pred             ccccceeeecccCCCCCeeeccc--------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS--------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGS   75 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gs   75 (257)
                      +.|+.||+++...+..+++|.+.        |.+|++++.         ++.|+||+++.+.+.. +..+|||||+++|+
T Consensus       278 G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~---------~l~hpniv~~~~~~~~-~~~~lv~e~~~~gs  347 (535)
T 2h8h_A          278 GCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMK---------KLRHEKLVQLYAVVSE-EPIYIVTEYMSKGS  347 (535)
T ss_dssp             CSSEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHH---------HCCCTTBCCEEEEECS-SSCEEEECCCTTEE
T ss_pred             CCCeEEEEEEECCCceEEEEEeCCCCCCHHHHHHHHHHHH---------hCCCCCEeeEEEEEee-ccceEeeehhcCCc
Confidence            57899999999888788888654        345555555         7889999999998865 77899999999999


Q ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc----ccc
Q 044568           76 LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF----VID  151 (257)
Q Consensus        76 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~----~~~  151 (257)
                      |.+++.......+++.++..++.|++.||.|||++   +++||||||+|||++.++.+||+|||+++......    ...
T Consensus       348 L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~  424 (535)
T 2h8h_A          348 LLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGA  424 (535)
T ss_dssp             HHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHHHHTTCST
T ss_pred             HHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEEcCCCcEEEcccccceecCCCceecccCC
Confidence            99999753445699999999999999999999999   99999999999999999999999999997654322    223


Q ss_pred             cCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHH
Q 044568          152 KRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNL  230 (257)
Q Consensus       152 ~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (257)
                      .++..|+|||.+....++.++||||||+++|||++ |+.||......   .....          +.... ....+..++
T Consensus       425 ~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~---~~~~~----------i~~~~-~~~~~~~~~  490 (535)
T 2h8h_A          425 KFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR---EVLDQ----------VERGY-RMPCPPECP  490 (535)
T ss_dssp             TSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHH---HHHHH----------HHTTC-CCCCCTTCC
T ss_pred             cCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH---HHHHH----------HHcCC-CCCCCCCCC
Confidence            44567999999998899999999999999999999 99999754111   11100          00000 112344566


Q ss_pred             HHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          231 ENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       231 ~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ..+.+++.+||+.||++|| +++|++.|
T Consensus       491 ~~l~~li~~cl~~dP~~RPt~~~l~~~L  518 (535)
T 2h8h_A          491 ESLHDLMCQCWRKEPEERPTFEYLQAFL  518 (535)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence            7899999999999999999 99998764

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.9e-38  Score=270.00  Aligned_cols=218  Identities=18%  Similarity=0.180  Sum_probs=179.2

Q ss_pred             cccccceeeecc-cCCCCCeeeccc-----------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCce
Q 044568            3 CTKLSNFYRSSF-NARNSPWISRVS-----------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVS   64 (257)
Q Consensus         3 ~~~~~~~y~~~~-~~~~~~~i~~~~-----------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~   64 (257)
                      .+.++.||++.. .++..+++|...                 +.+|++.+.         ++.|+||+++.+.+...+..
T Consensus        34 ~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~Iv~~~~~~~~~~~~  104 (335)
T 3dls_A           34 SGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILS---------RVEHANIIKVLDIFENQGFF  104 (335)
T ss_dssp             SSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHT---------TCCCTTBCCEEEEEECSSEE
T ss_pred             ecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHH---------hCCCCCEeeEEEEEeeCCEE
Confidence            367899999984 455567777543                 344666666         78899999999999999999


Q ss_pred             eEEEeecCCC-CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeeccccc
Q 044568           65 GKIERPVRNG-SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKL  143 (257)
Q Consensus        65 ~lV~E~~~~g-sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~  143 (257)
                      ++||||+.+| +|.+++.  ....+++..+..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++..
T Consensus       105 ~lv~e~~~~g~~l~~~~~--~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~Dfg~a~~  179 (335)
T 3dls_A          105 QLVMEKHGSGLDLFAFID--RHPRLDEPLASYIFRQLVSAVGYLRLK---DIIHRDIKDENIVIAEDFTIKLIDFGSAAY  179 (335)
T ss_dssp             EEEEECCTTSCBHHHHHH--TCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             EEEEEeCCCCccHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEEeccCHHHEEEcCCCcEEEeecccceE
Confidence            9999999777 9999997  556799999999999999999999999   999999999999999999999999999876


Q ss_pred             CCCC--cccccCCCCccCcccccCCCC-CccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhh
Q 044568          144 PNED--FVIDKRDKGYMAPECYKRTPI-SVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLV  220 (257)
Q Consensus       144 ~~~~--~~~~~~~~~~~aPE~~~~~~~-~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (257)
                      ....  .....+|+.|+|||.+.+..+ +.++||||||+++|||++|..||.....                  ......
T Consensus       180 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~------------------~~~~~~  241 (335)
T 3dls_A          180 LERGKLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEE------------------TVEAAI  241 (335)
T ss_dssp             CCTTCCBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGG------------------GTTTCC
T ss_pred             CCCCCceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHH------------------HHhhcc
Confidence            4432  245578999999999988776 7899999999999999999999964210                  000111


Q ss_pred             cCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          221 RGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       221 ~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                         ..+....+.+.+++.+||+.||++|| ++|+++
T Consensus       242 ---~~~~~~~~~l~~li~~~L~~dP~~Rps~~ell~  274 (335)
T 3dls_A          242 ---HPPYLVSKELMSLVSGLLQPVPERRTTLEKLVT  274 (335)
T ss_dssp             ---CCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ---CCCcccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence               12223456789999999999999999 999986

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=3.5e-38  Score=270.00  Aligned_cols=218  Identities=15%  Similarity=0.128  Sum_probs=172.4

Q ss_pred             ccccceeeecc----cCCCCCeeeccc-------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeE
Q 044568            4 TKLSNFYRSSF----NARNSPWISRVS-------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGK   66 (257)
Q Consensus         4 ~~~~~~y~~~~----~~~~~~~i~~~~-------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~l   66 (257)
                      +.++.||+++.    .++..+++|...             +.+|++.+.         ++.|+||+++.+.+...+..++
T Consensus        28 G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~---------~l~hp~iv~~~~~~~~~~~~~l   98 (327)
T 3a62_A           28 GGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILE---------EVKHPFIVDLIYAFQTGGKLYL   98 (327)
T ss_dssp             ETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHH---------HCCCTTBCCEEEEEECSSCEEE
T ss_pred             CCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHH---------hCCCCCccceeEEEEcCCEEEE
Confidence            56899999986    466677777543             223444444         7889999999999999999999


Q ss_pred             EEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC
Q 044568           67 IERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE  146 (257)
Q Consensus        67 V~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~  146 (257)
                      ||||+++|+|.+++..  ...+++..+..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++.....
T Consensus        99 v~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~~~  173 (327)
T 3a62_A           99 ILEYLSGGELFMQLER--EGIFMEDTACFYLAEISMALGHLHQK---GIIYRDLKPENIMLNHQGHVKLTDFGLCKESIH  173 (327)
T ss_dssp             EEECCTTEEHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTSCEEECCCSCC-----
T ss_pred             EEeCCCCCcHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHHHhC---CEEcccCCHHHeEECCCCcEEEEeCCccccccc
Confidence            9999999999999973  45689999999999999999999999   999999999999999999999999999864322


Q ss_pred             ---CcccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc-C
Q 044568          147 ---DFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR-G  222 (257)
Q Consensus       147 ---~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  222 (257)
                         ......+|+.|+|||.+.+..++.++||||||+++|||++|+.||.....   .....             .... .
T Consensus       174 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~---~~~~~-------------~i~~~~  237 (327)
T 3a62_A          174 DGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENR---KKTID-------------KILKCK  237 (327)
T ss_dssp             -----CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH---HHHHH-------------HHHHTC
T ss_pred             CCccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCH---HHHHH-------------HHHhCC
Confidence               22345689999999999988899999999999999999999999975421   11111             1111 1


Q ss_pred             CCCCHHHHHHHHHHHHHcccCCCCCCC-hH
Q 044568          223 TKVDKKNLENLVKVGLWCVQDEPALRP-MK  251 (257)
Q Consensus       223 ~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~  251 (257)
                      ...+......+.+++.+||+.||.+|| +.
T Consensus       238 ~~~p~~~~~~~~~li~~~L~~dp~~R~~~~  267 (327)
T 3a62_A          238 LNLPPYLTQEARDLLKKLLKRNAASRLGAG  267 (327)
T ss_dssp             CCCCTTSCHHHHHHHHHHSCSCGGGSTTSS
T ss_pred             CCCCCCCCHHHHHHHHHHHhcCHhhccCCC
Confidence            123344567889999999999999998 53

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=2.2e-38  Score=281.09  Aligned_cols=229  Identities=14%  Similarity=0.084  Sum_probs=179.3

Q ss_pred             ccccceeeecccCC-CCCeeeccc------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFNAR-NSPWISRVS------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~~~-~~~~i~~~~------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||+++...+ +.+++|.+.            +.+|.+.+.         .+.|+||+++.+.+...+..+|||||
T Consensus        85 G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~---------~~~hp~Iv~l~~~~~~~~~~~lV~Ey  155 (437)
T 4aw2_A           85 GAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLV---------NGDSKWITTLHYAFQDDNNLYLVMDY  155 (437)
T ss_dssp             CSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHH---------HSCTTTBCCEEEEEECSSEEEEEECC
T ss_pred             CCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHH---------hCCCCCEEEEEEEEeeCCEEEEEEec
Confidence            57899999998764 456777654            233444443         77899999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc--
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF--  148 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~--  148 (257)
                      |++|+|.+++.. ....+++..+..++.|++.||.|||++   +|+||||||+|||++.++.+||+|||+++......  
T Consensus       156 ~~gg~L~~~l~~-~~~~l~e~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILl~~~g~vkL~DFGla~~~~~~~~~  231 (437)
T 4aw2_A          156 YVGGDLLTLLSK-FEDRLPEEMARFYLAEMVIAIDSVHQL---HYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTV  231 (437)
T ss_dssp             CTTCBHHHHHHT-TTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSCE
T ss_pred             CCCCcHHHHHHH-ccCCCCHHHHHHHHHHHHHHHHHHHhC---CeEecccCHHHeeEcCCCCEEEcchhhhhhcccCCCc
Confidence            999999999985 457799999999999999999999999   99999999999999999999999999987543322  


Q ss_pred             --ccccCCCCccCccccc-----CCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc
Q 044568          149 --VIDKRDKGYMAPECYK-----RTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR  221 (257)
Q Consensus       149 --~~~~~~~~~~aPE~~~-----~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (257)
                        ....||+.|+|||++.     ...++.++|||||||++|||++|+.||.......   ......     ...  ....
T Consensus       232 ~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~---~~~~i~-----~~~--~~~~  301 (437)
T 4aw2_A          232 QSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVE---TYGKIM-----NHK--ERFQ  301 (437)
T ss_dssp             ECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHH---HHHHHH-----THH--HHCC
T ss_pred             ccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhH---HHHhhh-----hcc--cccc
Confidence              2357899999999987     4568999999999999999999999997552111   111110     000  0011


Q ss_pred             CCCCCHHHHHHHHHHHHHcccCCCCC--CC-hHHHHH
Q 044568          222 GTKVDKKNLENLVKVGLWCVQDEPAL--RP-MKCAVM  255 (257)
Q Consensus       222 ~~~~~~~~~~~l~~l~~~cl~~~p~~--RP-~~ei~~  255 (257)
                      -........+.+.+++.+||..+|++  || ++|+++
T Consensus       302 ~p~~~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~  338 (437)
T 4aw2_A          302 FPTQVTDVSENAKDLIRRLICSREHRLGQNGIEDFKK  338 (437)
T ss_dssp             CCSSCCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHT
T ss_pred             CCcccccCCHHHHHHHHHHhcccccccCCCCHHHHhC
Confidence            11111234567889999999998888  99 999875

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2e-38  Score=266.27  Aligned_cols=227  Identities=16%  Similarity=0.246  Sum_probs=179.0

Q ss_pred             cccccceeeeccc---CCCCCeeeccch----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEe
Q 044568            3 CTKLSNFYRSSFN---ARNSPWISRVSW----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIER   69 (257)
Q Consensus         3 ~~~~~~~y~~~~~---~~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E   69 (257)
                      .+.++.||++...   ++..+++|....          .+|++.+.         ++.|+||+++.+.+ ..+..++|||
T Consensus        20 ~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~i~~~~~~~-~~~~~~lv~e   89 (287)
T 1u59_A           20 CGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMH---------QLDNPYIVRLIGVC-QAEALMLVME   89 (287)
T ss_dssp             CCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHH---------HCCCTTBCCEEEEE-ESSSEEEEEE
T ss_pred             ccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHH---------hCCCCCEeEEEEEe-cCCCcEEEEE
Confidence            3678999999854   344567776542          23444444         77899999999998 5667899999


Q ss_pred             ecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-
Q 044568           70 PVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-  148 (257)
Q Consensus        70 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-  148 (257)
                      |+++++|.+++.. ....+++.++..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||++....... 
T Consensus        90 ~~~~~~L~~~l~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~  165 (287)
T 1u59_A           90 MAGGGPLHKFLVG-KREEIPVSNVAELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDS  165 (287)
T ss_dssp             CCTTEEHHHHHTT-CTTTSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSC
T ss_pred             eCCCCCHHHHHHh-CCccCCHHHHHHHHHHHHHHHHHHHHC---CEeeCCCchheEEEcCCCCEEECcccceeeeccCcc
Confidence            9999999999975 556799999999999999999999999   99999999999999999999999999987653222 


Q ss_pred             -----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcC
Q 044568          149 -----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRG  222 (257)
Q Consensus       149 -----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (257)
                           ....+++.|+|||.+.+..++.++||||||+++|||++ |+.||.......    ....         +.. ...
T Consensus       166 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~----~~~~---------i~~-~~~  231 (287)
T 1u59_A          166 YYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPE----VMAF---------IEQ-GKR  231 (287)
T ss_dssp             EECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHH----HHHH---------HHT-TCC
T ss_pred             eeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHH----HHHH---------Hhc-CCc
Confidence                 22344677999999988888999999999999999998 999997542211    1000         000 011


Q ss_pred             CCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          223 TKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       223 ~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ...+...++.+.+++.+||+.||++|| +.|+++.|
T Consensus       232 ~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l  267 (287)
T 1u59_A          232 MECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRM  267 (287)
T ss_dssp             CCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHH
T ss_pred             CCCCCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            133455667899999999999999999 99998764

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.4e-38  Score=277.31  Aligned_cols=236  Identities=20%  Similarity=0.241  Sum_probs=169.3

Q ss_pred             ccccceeeecccCCC----CCeeeccchh-hhHHHHhHhhhccccccccCCceeeeceeee-ecCceeEEEeecCCCCHH
Q 044568            4 TKLSNFYRSSFNARN----SPWISRVSWT-ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAK-LTSVSGKIERPVRNGSLT   77 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~----~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~-~~~~~~lV~E~~~~gsL~   77 (257)
                      +.++.||+++..+..    .+++|..... ...+.-.+......+.++.|+||+++.+.+. ..+..++||||+++|+|.
T Consensus       100 G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv~e~~~~g~L~  179 (373)
T 3c1x_A          100 GHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLR  179 (373)
T ss_dssp             CSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEEEECCTTCBHH
T ss_pred             CCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEEEECCCCCCHH
Confidence            578999999975443    3466654321 1001111111111344889999999999865 456889999999999999


Q ss_pred             HHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-------cc
Q 044568           78 DIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-------VI  150 (257)
Q Consensus        78 ~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-------~~  150 (257)
                      +++.. ....+++.++..++.|++.||.|||++   +++||||||+||+++.++.+||+|||+++......       ..
T Consensus       180 ~~l~~-~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~  255 (373)
T 3c1x_A          180 NFIRN-ETHNPTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTG  255 (373)
T ss_dssp             HHHHC-TTCCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC-------------------
T ss_pred             HHHhh-cccCCCHHHHHHHHHHHHHHHHHHHHC---CEecCccchheEEECCCCCEEEeeccccccccccccccccccCC
Confidence            99975 556789999999999999999999999   99999999999999999999999999987542221       23


Q ss_pred             ccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHH
Q 044568          151 DKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKN  229 (257)
Q Consensus       151 ~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (257)
                      ..+++.|+|||.+.+..++.++||||||+++|||++ |..||............    .    ..      .....+...
T Consensus       256 ~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~~~~~~----~----~~------~~~~~p~~~  321 (373)
T 3c1x_A          256 AKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYL----L----QG------RRLLQPEYC  321 (373)
T ss_dssp             --CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSCHHHHH----H----TT------CCCCCCTTC
T ss_pred             CCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHH----H----cC------CCCCCCCCC
Confidence            345667999999998899999999999999999999 67777654322211000    0    00      011223445


Q ss_pred             HHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          230 LENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       230 ~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      +..+.+++.+||+.||++|| ++|+++.|
T Consensus       322 ~~~l~~li~~cl~~dp~~RPs~~ell~~L  350 (373)
T 3c1x_A          322 PDPLYEVMLKCWHPKAEMRPSFSELVSRI  350 (373)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            67899999999999999999 99998764

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=100.00  E-value=1.6e-38  Score=265.61  Aligned_cols=227  Identities=20%  Similarity=0.323  Sum_probs=179.7

Q ss_pred             ccccceeeecccCCCCCeeeccc--------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS--------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGS   75 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gs   75 (257)
                      +.++.||+++...+..+++|...        +.+|++.+.         ++.|+|++++.+.+. .+..++||||+++++
T Consensus        24 G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~---------~l~h~~i~~~~~~~~-~~~~~~v~e~~~~~~   93 (279)
T 1qpc_A           24 GQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMK---------QLQHQRLVRLYAVVT-QEPIYIITEYMENGS   93 (279)
T ss_dssp             ETTEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHH---------HCCCTTBCCEEEEEC-SSSCEEEEECCTTCB
T ss_pred             CCCeEEEEEEEcCCcEEEEEEecCCcccHHHHHHHHHHHH---------hCCCcCcceEEEEEc-CCCcEEEEecCCCCC
Confidence            56889999998877778887654        345555555         778999999998876 556899999999999


Q ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc----ccc
Q 044568           76 LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF----VID  151 (257)
Q Consensus        76 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~----~~~  151 (257)
                      |.+++.......+++.++..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||.+.......    ...
T Consensus        94 L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~  170 (279)
T 1qpc_A           94 LVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGA  170 (279)
T ss_dssp             HHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEECCTTC
T ss_pred             HHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHhhEEEcCCCCEEECCCcccccccCcccccccCC
Confidence            99999743334799999999999999999999999   99999999999999999999999999987654322    223


Q ss_pred             cCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHH
Q 044568          152 KRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNL  230 (257)
Q Consensus       152 ~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (257)
                      .++..|+|||.+.+..++.++||||||+++|||++ |+.||......   ......          .... ....+...+
T Consensus       171 ~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~---~~~~~~----------~~~~-~~~~~~~~~  236 (279)
T 1qpc_A          171 KFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNP---EVIQNL----------ERGY-RMVRPDNCP  236 (279)
T ss_dssp             CCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHH---HHHHHH----------HTTC-CCCCCTTCC
T ss_pred             CCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHH---HHHHHH----------hccc-CCCCccccc
Confidence            45667999999988888999999999999999999 99999754211   111100          0000 112234456


Q ss_pred             HHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          231 ENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       231 ~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      +.+.+++.+||+.||++|| +.++++.|
T Consensus       237 ~~l~~li~~~l~~~p~~Rps~~~l~~~l  264 (279)
T 1qpc_A          237 EELYQLMRLCWKERPEDRPTFDYLRSVL  264 (279)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             HHHHHHHHHHhccChhhCCCHHHHHHHH
Confidence            7899999999999999999 99998764

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.3e-38  Score=273.80  Aligned_cols=229  Identities=18%  Similarity=0.196  Sum_probs=178.6

Q ss_pred             ccccceeeeccc------CCCCCeeeccc----------hhhhHHHHhHhhhccccccc-cCCceeeeceeeeecCceeE
Q 044568            4 TKLSNFYRSSFN------ARNSPWISRVS----------WTADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVSGK   66 (257)
Q Consensus         4 ~~~~~~y~~~~~------~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~~l   66 (257)
                      +.++.||+++..      .+..+++|...          +.+|++.+.         ++ .|+||+++.+.+...+..++
T Consensus        56 G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~---------~l~~hp~iv~~~~~~~~~~~~~l  126 (344)
T 1rjb_A           56 GAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMT---------QLGSHENIVNLLGACTLSGPIYL  126 (344)
T ss_dssp             CSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHH---------HHCCCTTBCCEEEEECSSSSCEE
T ss_pred             CCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHH---------hhcCCCCeeeEEEEEeeCCccEE
Confidence            568899999862      23346776643          334555544         66 79999999999999999999


Q ss_pred             EEeecCCCCHHHHHhccCC---------------------CCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCce
Q 044568           67 IERPVRNGSLTDIIFCSAE---------------------RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNI  125 (257)
Q Consensus        67 V~E~~~~gsL~~~l~~~~~---------------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~ni  125 (257)
                      ||||+++|+|.+++.....                     ..+++.++..++.|++.||.|||++   +++||||||+||
T Consensus       127 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NI  203 (344)
T 1rjb_A          127 IFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK---SCVHRDLAARNV  203 (344)
T ss_dssp             EEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT---TEEETTCSGGGE
T ss_pred             EEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChhhE
Confidence            9999999999999975321                     2489999999999999999999999   999999999999


Q ss_pred             eeCCCCceEEeeecccccCCCCc-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChh
Q 044568          126 LMDEFWTAKILDFGLAKLPNEDF-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPE  199 (257)
Q Consensus       126 l~~~~~~~kl~dfg~~~~~~~~~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~  199 (257)
                      +++.++.+||+|||++.......     ....+|+.|+|||.+.+..++.++||||||+++|||++ |..||........
T Consensus       204 ll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~  283 (344)
T 1rjb_A          204 LVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDAN  283 (344)
T ss_dssp             EEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHH
T ss_pred             EEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCCcHHH
Confidence            99999999999999987432221     23345677999999998889999999999999999998 9999976532221


Q ss_pred             hHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          200 EIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                         .....         .... ....+...++.+.+++.+||+.||.+|| +.|+++.|
T Consensus       284 ---~~~~~---------~~~~-~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l  329 (344)
T 1rjb_A          284 ---FYKLI---------QNGF-KMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFL  329 (344)
T ss_dssp             ---HHHHH---------HTTC-CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             ---HHHHH---------hcCC-CCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHH
Confidence               11100         0000 1122344567899999999999999999 99998764

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=100.00  E-value=1.3e-38  Score=271.52  Aligned_cols=237  Identities=20%  Similarity=0.280  Sum_probs=179.5

Q ss_pred             ccccceeeeccc-----CCCCCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeec--CceeE
Q 044568            4 TKLSNFYRSSFN-----ARNSPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT--SVSGK   66 (257)
Q Consensus         4 ~~~~~~y~~~~~-----~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~--~~~~l   66 (257)
                      +.++.||++.+.     ++..+++|...          +.+|++.+.         ++.|+|++++.+.+...  ...++
T Consensus        42 G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~~~~~~~~~l  112 (318)
T 3lxp_A           42 GHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILR---------TLYHEHIIKYKGCCEDAGAASLQL  112 (318)
T ss_dssp             CSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHH---------HCCCTTBCCEEEEEEETTTTEEEE
T ss_pred             CCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHH---------hCCCcchhhEEEEEecCCCceEEE
Confidence            568889776543     45557777654          234555554         78899999999999874  57799


Q ss_pred             EEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC
Q 044568           67 IERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE  146 (257)
Q Consensus        67 V~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~  146 (257)
                      ||||+++|+|.+++..   ..+++.++..++.|++.||.|||++   +++|+||||+||+++.++.+||+|||.+.....
T Consensus       113 v~e~~~~~~L~~~l~~---~~~~~~~~~~i~~~l~~~l~~LH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~  186 (318)
T 3lxp_A          113 VMEYVPLGSLRDYLPR---HSIGLAQLLLFAQQICEGMAYLHAQ---HYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPE  186 (318)
T ss_dssp             EECCCTTCBHHHHGGG---SCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGGCEECCT
T ss_pred             EEecccCCcHHHHHhh---CCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEEcCCCCEEECCccccccccc
Confidence            9999999999999964   3599999999999999999999999   999999999999999999999999999876543


Q ss_pred             Cc------ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhh
Q 044568          147 DF------VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLV  220 (257)
Q Consensus       147 ~~------~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (257)
                      ..      ....++..|+|||.+.+..++.++||||||+++|||++|..||......  ......+.............+
T Consensus       187 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  264 (318)
T 3lxp_A          187 GHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTK--FLELIGIAQGQMTVLRLTELL  264 (318)
T ss_dssp             TCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHH--HHHHHCSCCHHHHHHHHHHHH
T ss_pred             cccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchh--hhhhhcccccchhHHHHHHHH
Confidence            22      2335566799999999888999999999999999999999999743110  000000000001111111222


Q ss_pred             c---CCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          221 R---GTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       221 ~---~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      .   ....+...+..+.+++.+||+.||++|| ++|+++.|
T Consensus       265 ~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L  305 (318)
T 3lxp_A          265 ERGERLPRPDKCPAEVYHLMKNCWETEASFRPTFENLIPIL  305 (318)
T ss_dssp             HTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             hcccCCCCCccccHHHHHHHHHHcCCCcccCcCHHHHHHHH
Confidence            1   1134555678899999999999999999 99998864

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=100.00  E-value=4.9e-38  Score=262.71  Aligned_cols=223  Identities=16%  Similarity=0.173  Sum_probs=176.6

Q ss_pred             ccccceeeecccCCC-CCeeeccc------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFNARN-SPWISRVS------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~-~~~i~~~~------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||++....++ .+++|...            +.+|++.+.         ++.|+||+++.+.+...+..++||||
T Consensus        20 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~---------~l~h~~i~~~~~~~~~~~~~~lv~e~   90 (279)
T 3fdn_A           20 GKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQS---------HLRHPNILRLYGYFHDATRVYLILEY   90 (279)
T ss_dssp             CSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHT---------TCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             CCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHH---------cCCCCCCcchhheEecCCEEEEEEec
Confidence            568899999866655 56677543            223333333         78899999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC-Ccc
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE-DFV  149 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~-~~~  149 (257)
                      +++|+|.+++..  ...+++..+..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||++..... ...
T Consensus        91 ~~~~~l~~~l~~--~~~~~~~~~~~~~~qi~~~l~~LH~~---~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~~~~  165 (279)
T 3fdn_A           91 APLGTVYRELQK--LSKFDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRT  165 (279)
T ss_dssp             CTTEEHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHTT---TCEECCCCGGGEEECTTSCEEECSCCEESCC------
T ss_pred             CCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhC---CEecccCChHhEEEcCCCCEEEEeccccccCCccccc
Confidence            999999999973  45699999999999999999999999   999999999999999999999999998865432 224


Q ss_pred             cccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHH
Q 044568          150 IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKN  229 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (257)
                      ...+++.|+|||.+.+..++.++||||||+++|+|++|..||.......   ....          ...  .....+...
T Consensus       166 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~---~~~~----------~~~--~~~~~~~~~  230 (279)
T 3fdn_A          166 DLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQE---TYKR----------ISR--VEFTFPDFV  230 (279)
T ss_dssp             --CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH---HHHH----------HHH--TCCCCCTTS
T ss_pred             ccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHHH---HHHH----------HHh--CCCCCCCcC
Confidence            5578889999999998889999999999999999999999997542111   1100          000  011233445


Q ss_pred             HHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          230 LENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       230 ~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ++.+.+++.+||+.||.+|| +.|+++
T Consensus       231 ~~~~~~li~~~l~~~p~~Rps~~e~l~  257 (279)
T 3fdn_A          231 TEGARDLISRLLKHNPSQRPMLREVLE  257 (279)
T ss_dssp             CHHHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred             CHHHHHHHHHHhccChhhCCCHHHHhh
Confidence            57789999999999999999 999986

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=5.1e-38  Score=268.14  Aligned_cols=224  Identities=17%  Similarity=0.193  Sum_probs=171.6

Q ss_pred             ccccceeeeccc-CCCCCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecC----------
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTS----------   62 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~----------   62 (257)
                      +.++.||+++.. ++..+++|...          +.+|++.+.         ++.|+||+++.+.+...+          
T Consensus        17 G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~---------~l~hpniv~~~~~~~~~~~~~~~~~~~~   87 (332)
T 3qd2_B           17 GGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALA---------KLEHPGIVRYFNAWLETPPEKWQEEMDE   87 (332)
T ss_dssp             C-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHT---------SCCCTTBCCEEEEEEECCSCHHHHHHHC
T ss_pred             CCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHH---------hCCCCCEeeEEEEEEEeccchhhhhhhh
Confidence            578999999976 67778888754          234444444         788999999999876543          


Q ss_pred             -----------------------------------------------ceeEEEeecCCCCHHHHHhccC-CCCCCHHHHH
Q 044568           63 -----------------------------------------------VSGKIERPVRNGSLTDIIFCSA-ERNPYWNQRV   94 (257)
Q Consensus        63 -----------------------------------------------~~~lV~E~~~~gsL~~~l~~~~-~~~l~~~~~~   94 (257)
                                                                     ..++||||+++|+|.+++.... ....++..+.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~  167 (332)
T 3qd2_B           88 IWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHGVCL  167 (332)
T ss_dssp             --------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCHHHHH
T ss_pred             hhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhhHHHH
Confidence                                                           2789999999999999997532 2335667789


Q ss_pred             HHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc---------------ccccCCCCccC
Q 044568           95 RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF---------------VIDKRDKGYMA  159 (257)
Q Consensus        95 ~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~---------------~~~~~~~~~~a  159 (257)
                      .++.|++.||.|||++   +++||||||+||+++.++.+||+|||++.......               ....+|+.|+|
T Consensus       168 ~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a  244 (332)
T 3qd2_B          168 HIFIQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMS  244 (332)
T ss_dssp             HHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGGGSC
T ss_pred             HHHHHHHHHHHHHHhC---CeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcCccC
Confidence            9999999999999999   99999999999999999999999999987654321               23468889999


Q ss_pred             cccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHH
Q 044568          160 PECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLW  239 (257)
Q Consensus       160 PE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  239 (257)
                      ||.+.+..++.++||||||+++|||++|..|+...      .....         ..... ..........+.+.+++.+
T Consensus       245 PE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~------~~~~~---------~~~~~-~~~~~~~~~~~~~~~li~~  308 (332)
T 3qd2_B          245 PEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMER------VRIIT---------DVRNL-KFPLLFTQKYPQEHMMVQD  308 (332)
T ss_dssp             HHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHH------HHHHH---------HHHTT-CCCHHHHHHCHHHHHHHHH
T ss_pred             hHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHH------HHHHH---------Hhhcc-CCCcccccCChhHHHHHHH
Confidence            99999989999999999999999999987765311      00000         00000 0001112334677899999


Q ss_pred             cccCCCCCCC-hHHHHH
Q 044568          240 CVQDEPALRP-MKCAVM  255 (257)
Q Consensus       240 cl~~~p~~RP-~~ei~~  255 (257)
                      ||+.||++|| ++|+++
T Consensus       309 ~l~~~p~~Rps~~~~l~  325 (332)
T 3qd2_B          309 MLSPSPTERPEATDIIE  325 (332)
T ss_dssp             HHCSSGGGSCCHHHHHH
T ss_pred             HccCCCCcCCCHHHHhh
Confidence            9999999999 999986

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=100.00  E-value=9e-39  Score=267.05  Aligned_cols=227  Identities=21%  Similarity=0.254  Sum_probs=173.1

Q ss_pred             ccccceeeecccCCCCCeeeccc-------hhhhHHHHhHhhhccccccccCCceeeeceeeee-cCceeEEEeecCCCC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS-------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL-TSVSGKIERPVRNGS   75 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~-------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~-~~~~~lV~E~~~~gs   75 (257)
                      +.++.||+++.. +..+++|...       +.+|++.+.         ++.|+|++++.+.+.. .+..++||||+++|+
T Consensus        32 G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~~~~~~~~lv~e~~~~~~  101 (278)
T 1byg_A           32 GEFGDVMLGDYR-GNKVAVKCIKNDATAQAFLAEASVMT---------QLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGS  101 (278)
T ss_dssp             CSSCEEEEEEET-TEEEEEEECCCCC--HHHHHTHHHHT---------TCCCTTBCCEEEEECCC--CCEEEECCCTTEE
T ss_pred             CCCceEEEEEEc-CCEEEEEEecchhHHHHHHHHHHHHH---------hCCCCCEeeEEEEEEcCCCceEEEEecCCCCC
Confidence            568899999874 6677887654       334554444         7889999999998654 457899999999999


Q ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcccccCCC
Q 044568           76 LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK  155 (257)
Q Consensus        76 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~  155 (257)
                      |.+++.......+++..+..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||++...........++.
T Consensus       102 L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~  178 (278)
T 1byg_A          102 LVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPV  178 (278)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECCCCC------------CCT
T ss_pred             HHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhC---CccccCCCcceEEEeCCCcEEEeeccccccccccccCCCccc
Confidence            99999753333488999999999999999999999   999999999999999999999999999876555555556788


Q ss_pred             CccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHH
Q 044568          156 GYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLV  234 (257)
Q Consensus       156 ~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  234 (257)
                      .|+|||.+.+..++.++||||||+++|||++ |+.||.......   ...          ...... ....+...++.+.
T Consensus       179 ~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~---~~~----------~~~~~~-~~~~~~~~~~~l~  244 (278)
T 1byg_A          179 KWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD---VVP----------RVEKGY-KMDAPDGCPPAVY  244 (278)
T ss_dssp             TTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGG---HHH----------HHTTTC-CCCCCTTCCHHHH
T ss_pred             cccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHHH---HHH----------HHhcCC-CCCCcccCCHHHH
Confidence            8999999998889999999999999999998 999997542111   000          000000 1123445567899


Q ss_pred             HHHHHcccCCCCCCC-hHHHHHhC
Q 044568          235 KVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       235 ~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      +++.+||+.||.+|| +.|+++.|
T Consensus       245 ~li~~~l~~~p~~Rps~~~l~~~L  268 (278)
T 1byg_A          245 EVMKNCWHLDAAMRPSFLQLREQL  268 (278)
T ss_dssp             HHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             HHHHHHhcCChhhCCCHHHHHHHH
Confidence            999999999999999 99998764

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=100.00  E-value=1e-38  Score=269.45  Aligned_cols=236  Identities=17%  Similarity=0.223  Sum_probs=180.8

Q ss_pred             ccccceeeec-----ccCCCCCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeec--CceeE
Q 044568            4 TKLSNFYRSS-----FNARNSPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT--SVSGK   66 (257)
Q Consensus         4 ~~~~~~y~~~-----~~~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~--~~~~l   66 (257)
                      +.++.||+++     ..++..+++|...          +.+|++.+.         ++.|+|++++.+.+...  +..++
T Consensus        32 G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~i~~~~~~~~~~~~~~~~l  102 (302)
T 4e5w_A           32 GHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILR---------NLYHENIVKYKGICTEDGGNGIKL  102 (302)
T ss_dssp             CSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHH---------TCCCTTBCCEEEEEEC---CCEEE
T ss_pred             CCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHH---------hCCCCCeeeeeeEEecCCCceEEE
Confidence            5788999998     3456667777644          234555555         78899999999998876  67899


Q ss_pred             EEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC
Q 044568           67 IERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE  146 (257)
Q Consensus        67 V~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~  146 (257)
                      ||||+++|+|.+++.. ....+++.++..++.|++.||.|||++   +++|+||||+||+++.++.++|+|||++.....
T Consensus       103 v~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~  178 (302)
T 4e5w_A          103 IMEFLPSGSLKEYLPK-NKNKINLKQQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVKIGDFGLTKAIET  178 (302)
T ss_dssp             EEECCTTCBHHHHHHH-HTTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCEECCT
T ss_pred             EEEeCCCCcHHHHHHh-ccccCCHHHHHHHHHHHHHHHHHhhcC---CcccCCCchheEEEcCCCCEEECcccccccccC
Confidence            9999999999999965 456799999999999999999999999   999999999999999999999999999876443


Q ss_pred             Cc------ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHh---hhhhhhh
Q 044568          147 DF------VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKC---FINRELN  217 (257)
Q Consensus       147 ~~------~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~---~~~~~~~  217 (257)
                      ..      ....+|..|+|||.+.+..++.++||||+|+++|||++|..|+.....     .......+.   .......
T Consensus       179 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~  253 (302)
T 4e5w_A          179 DKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMA-----LFLKMIGPTHGQMTVTRLV  253 (302)
T ss_dssp             TCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHH-----HHHHHHCSCCGGGHHHHHH
T ss_pred             CCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhh-----HHhhccCCcccccCHHHHH
Confidence            22      234566679999999988899999999999999999999999753310     000000000   0001111


Q ss_pred             h-hhc--CCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          218 K-LVR--GTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       218 ~-~~~--~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      . ...  ....+...++.+.+++.+||+.||.+|| +.|+++.|
T Consensus       254 ~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L  297 (302)
T 4e5w_A          254 NTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGF  297 (302)
T ss_dssp             HHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHH
T ss_pred             HHHhccCCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHH
Confidence            1 111  1134455668899999999999999999 99999865

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=100.00  E-value=4.8e-38  Score=265.04  Aligned_cols=227  Identities=19%  Similarity=0.261  Sum_probs=172.8

Q ss_pred             ccccceeeecccCCCC----Ceeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceee-eecCceeEEE
Q 044568            4 TKLSNFYRSSFNARNS----PWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRA-KLTSVSGKIE   68 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~----~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~-~~~~~~~lV~   68 (257)
                      +.++.||+++..++..    +++|...          +.+|++.+.         ++.|+|++++.+.+ ...+..++||
T Consensus        36 G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~~~~~~~~~v~  106 (298)
T 3f66_A           36 GHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMK---------DFSHPNVLSLLGICLRSEGSPLVVL  106 (298)
T ss_dssp             ETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHH---------TCCCTTBCCCCEEECCSSSCCEEEE
T ss_pred             cCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHH---------hCCCCCEeeeeeEEEcCCCceEEEE
Confidence            5689999999765442    4555533          233444444         78899999999985 4566889999


Q ss_pred             eecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc
Q 044568           69 RPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF  148 (257)
Q Consensus        69 E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~  148 (257)
                      ||+++|+|.+++.. ....+++.++..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++.......
T Consensus       107 e~~~~~~L~~~l~~-~~~~~~~~~~~~i~~ql~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~  182 (298)
T 3f66_A          107 PYMKHGDLRNFIRN-ETHNPTVKDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKE  182 (298)
T ss_dssp             ECCTTCBHHHHHHC-TTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECSCGGGCCCSCGG
T ss_pred             eCCCCCCHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEECCCCCEEECcccccccccccc
Confidence            99999999999975 567789999999999999999999999   99999999999999999999999999987543322


Q ss_pred             -------ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhh
Q 044568          149 -------VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLV  220 (257)
Q Consensus       149 -------~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (257)
                             ....+++.|+|||.+.+..++.++||||+|+++||+++ |.+||..........   ..          .. .
T Consensus       183 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~~---~~----------~~-~  248 (298)
T 3f66_A          183 YYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITV---YL----------LQ-G  248 (298)
T ss_dssp             GCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTTHHH---HH----------HT-T
T ss_pred             hhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHHHHH---HH----------hc-C
Confidence                   23345667999999998889999999999999999999 555665432221100   00          00 0


Q ss_pred             cCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          221 RGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       221 ~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      .....+...+..+.+++.+||+.||++|| ++|+++.|
T Consensus       249 ~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L  286 (298)
T 3f66_A          249 RRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRI  286 (298)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            01122334456799999999999999999 99998864

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=100.00  E-value=2.6e-38  Score=272.54  Aligned_cols=230  Identities=18%  Similarity=0.194  Sum_probs=178.9

Q ss_pred             ccccceeeecccC-CCCCeeeccc-----hhhhHHHHhHhhhccccccc-cCCceeeeceeeeecCceeEEEeecCCCCH
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS-----WTADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVSGKIERPVRNGSL   76 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~-----~~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL   76 (257)
                      +.++.||++.... +..+++|...     ..+|++.+.         ++ .|+||+++.+.+...+..++||||+++|+|
T Consensus        33 G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~E~~~l~---------~~~~hp~iv~~~~~~~~~~~~~lv~E~~~gg~L  103 (342)
T 2qr7_A           33 GSYSVCKRCIHKATNMEFAVKIIDKSKRDPTEEIEILL---------RYGQHPNIITLKDVYDDGKYVYVVTELMKGGEL  103 (342)
T ss_dssp             CSSEEEEEEEETTTTEEEEEEEEETTTCCCHHHHHHHH---------HHTTSTTBCCEEEEEECSSEEEEEECCCCSCBH
T ss_pred             CCCEEEEEEEECCCCCEEEEEEEEcccCChHHHHHHHH---------HhcCCCCcCeEEEEEEcCCEEEEEEeCCCCCcH
Confidence            5688999998764 5567777653     345665554         43 699999999999999999999999999999


Q ss_pred             HHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCC----CceEEeeecccccCCC---Ccc
Q 044568           77 TDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF----WTAKILDFGLAKLPNE---DFV  149 (257)
Q Consensus        77 ~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~----~~~kl~dfg~~~~~~~---~~~  149 (257)
                      .+++.  ....+++.++..++.|++.||.|||++   +++||||||+||++.+.    +.+||+|||++.....   ...
T Consensus       104 ~~~i~--~~~~~~~~~~~~~~~qi~~al~~lH~~---givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~  178 (342)
T 2qr7_A          104 LDKIL--RQKFFSEREASAVLFTITKTVEYLHAQ---GVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLM  178 (342)
T ss_dssp             HHHHH--TCTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBCTTCCBC
T ss_pred             HHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHC---CcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCcCCCCcee
Confidence            99997  456799999999999999999999999   99999999999998533    3599999999875432   224


Q ss_pred             cccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHH
Q 044568          150 IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKN  229 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (257)
                      ...+|+.|+|||.+.+..++.++||||||+++|||++|..||.................     ..   ...........
T Consensus       179 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~-----~~---~~~~~~~~~~~  250 (342)
T 2qr7_A          179 TPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGS-----GK---FSLSGGYWNSV  250 (342)
T ss_dssp             CSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHHHHHHHH-----CC---CCCCSTTTTTS
T ss_pred             ccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHHHHHHcc-----CC---cccCccccccC
Confidence            55778999999999887789999999999999999999999976432222111111110     00   00011122345


Q ss_pred             HHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          230 LENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       230 ~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .+.+.+++.+||+.||++|| +.|+++
T Consensus       251 s~~~~~li~~~L~~dP~~R~t~~~il~  277 (342)
T 2qr7_A          251 SDTAKDLVSKMLHVDPHQRLTAALVLR  277 (342)
T ss_dssp             CHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             CHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence            57789999999999999999 999875

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=100.00  E-value=5.4e-39  Score=269.57  Aligned_cols=225  Identities=14%  Similarity=0.192  Sum_probs=175.6

Q ss_pred             ccccceeeecccCCCC--------Ceeeccc---------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeE
Q 044568            4 TKLSNFYRSSFNARNS--------PWISRVS---------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGK   66 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~--------~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~l   66 (257)
                      +.++.||++.......        +++|...         +.+|++.+.         ++.|+||+++.+.+...+..++
T Consensus        19 G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~~~~~~~l   89 (289)
T 4fvq_A           19 GTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMS---------KLSHKHLVLNYGVCVCGDENIL   89 (289)
T ss_dssp             ETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHH---------TSCCTTBCCEEEEECCTTCCEE
T ss_pred             CCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHH---------hCCCCCEeEEEEEEEeCCCCEE
Confidence            5689999998776653        6676543         233444444         7889999999999999999999


Q ss_pred             EEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCc--------eEEeee
Q 044568           67 IERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT--------AKILDF  138 (257)
Q Consensus        67 V~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~--------~kl~df  138 (257)
                      ||||+++|+|.+++.. ....+++.++..++.|++.||.|||++   +++||||||+||+++.++.        +||+||
T Consensus        90 v~e~~~~~~L~~~l~~-~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~Df  165 (289)
T 4fvq_A           90 VQEFVKFGSLDTYLKK-NKNCINILWKLEVAKQLAAAMHFLEEN---TLIHGNVCAKNILLIREEDRKTGNPPFIKLSDP  165 (289)
T ss_dssp             EEECCTTCBHHHHHHH-TGGGCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEEECCBGGGTBCCEEEECCC
T ss_pred             EEECCCCCCHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHhhC---CeECCCcCcceEEEecCCcccccccceeeeccC
Confidence            9999999999999985 445599999999999999999999999   9999999999999988876        999999


Q ss_pred             cccccCCCCcccccCCCCccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhh
Q 044568          139 GLAKLPNEDFVIDKRDKGYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELN  217 (257)
Q Consensus       139 g~~~~~~~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (257)
                      |.+...... ....++..|+|||.+.+ ..++.++||||||+++|||++|..|+.........  ..             
T Consensus       166 g~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~--~~-------------  229 (289)
T 4fvq_A          166 GISITVLPK-DILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRK--LQ-------------  229 (289)
T ss_dssp             CSCTTTSCH-HHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHH--HH-------------
T ss_pred             cccccccCc-cccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchHHH--HH-------------
Confidence            998654332 34457888999999987 66899999999999999999965555433111110  00             


Q ss_pred             hhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          218 KLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       218 ~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ........+...+..+.+++.+||+.||.+|| ++|+++.|
T Consensus       230 ~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l  270 (289)
T 4fvq_A          230 FYEDRHQLPAPKAAELANLINNCMDYEPDHRPSFRAIIRDL  270 (289)
T ss_dssp             HHHTTCCCCCCSSCTTHHHHHHHSCSSGGGSCCHHHHHHHH
T ss_pred             HhhccCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence            00111122223345688999999999999999 99998764

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=100.00  E-value=1.6e-38  Score=270.03  Aligned_cols=236  Identities=17%  Similarity=0.212  Sum_probs=170.2

Q ss_pred             ccccceeeecc-cCCCCCeeeccchh--hhHH-HHhHhhhccccccccCCceeeeceeeeecCce----eEEEeecCCCC
Q 044568            4 TKLSNFYRSSF-NARNSPWISRVSWT--ADIE-VLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVS----GKIERPVRNGS   75 (257)
Q Consensus         4 ~~~~~~y~~~~-~~~~~~~i~~~~~~--~~~~-~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~----~lV~E~~~~gs   75 (257)
                      +.++.||+++. .++..+++|.....  ...+ ...+...-..+.++.|+||+++.+.+...+..    ++||||+++|+
T Consensus        23 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~lv~e~~~g~~  102 (311)
T 3ork_A           23 GGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVT  102 (311)
T ss_dssp             CSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEEEEEEEECCCEEE
T ss_pred             CCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcccEEEEecCCCCC
Confidence            56899999995 55666778865421  1101 11111111134488999999999998876654    99999999999


Q ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc------c
Q 044568           76 LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF------V  149 (257)
Q Consensus        76 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~------~  149 (257)
                      |.+++..  ...+++.++..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++.......      .
T Consensus       103 L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  177 (311)
T 3ork_A          103 LRDIVHT--EGPMTPKRAIEVIADACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTA  177 (311)
T ss_dssp             HHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEETTSCEEECCCSCC--------------
T ss_pred             HHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEcCCCCEEEeeccCccccccccccccccc
Confidence            9999973  45799999999999999999999999   99999999999999999999999999987543221      2


Q ss_pred             cccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHH
Q 044568          150 IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKN  229 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (257)
                      ...+|+.|+|||.+.+..++.++||||||+++|||++|+.||.......  . .....    ...    ...+.......
T Consensus       178 ~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~--~-~~~~~----~~~----~~~~~~~~~~~  246 (311)
T 3ork_A          178 AVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVS--V-AYQHV----RED----PIPPSARHEGL  246 (311)
T ss_dssp             ----CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHH--H-HHHHH----HCC----CCCHHHHSTTC
T ss_pred             ccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHH--H-HHHHh----cCC----CCCcccccCCC
Confidence            3457899999999999899999999999999999999999997542111  1 00000    000    00000011224


Q ss_pred             HHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          230 LENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       230 ~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +..+.+++.+||+.||++|| +.++++
T Consensus       247 ~~~l~~li~~~l~~dP~~R~~~~~~l~  273 (311)
T 3ork_A          247 SADLDAVVLKALAKNPENRYQTAAEMR  273 (311)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCSSHHHHH
T ss_pred             CHHHHHHHHHHHhcCHhhChhhHHHHH
Confidence            56789999999999999999 766653

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=100.00  E-value=2.9e-38  Score=269.45  Aligned_cols=226  Identities=18%  Similarity=0.266  Sum_probs=168.8

Q ss_pred             ccccceeeecccCCC----CCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCce----
Q 044568            4 TKLSNFYRSSFNARN----SPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVS----   64 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~----~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~----   64 (257)
                      +.++.||+++...++    .+++|...           +.+|++.+.         ++.|+|++++.+.+...+..    
T Consensus        34 G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~~~~~~~~~~  104 (323)
T 3qup_A           34 GEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMK---------EFDHPHVAKLVGVSLRSRAKGRLP  104 (323)
T ss_dssp             ETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHT---------TCCCTTBCCCCEEEECC-------
T ss_pred             cCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHH---------HCCCCceehhhceeeccccccCCC
Confidence            578999999987765    46777653           233444444         78899999999999877655    


Q ss_pred             --eEEEeecCCCCHHHHHhcc----CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeee
Q 044568           65 --GKIERPVRNGSLTDIIFCS----AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDF  138 (257)
Q Consensus        65 --~lV~E~~~~gsL~~~l~~~----~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~df  138 (257)
                        ++||||+++|+|.+++...    ....+++.++..++.|++.||.|||++   +++||||||+||+++.++.+||+||
T Consensus       105 ~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~Dikp~NIli~~~~~~kl~Df  181 (323)
T 3qup_A          105 IPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSR---NFIHRDLAARNCMLAEDMTVCVADF  181 (323)
T ss_dssp             CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECCC
T ss_pred             ccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcC---CcccCCCCcceEEEcCCCCEEEeec
Confidence              9999999999999999642    223689999999999999999999999   9999999999999999999999999


Q ss_pred             cccccCCCCc-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhh
Q 044568          139 GLAKLPNEDF-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFI  212 (257)
Q Consensus       139 g~~~~~~~~~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~  212 (257)
                      |++.......     ....+++.|+|||.+.+..++.++||||||+++|||++ |..||.......   ...        
T Consensus       182 g~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~---~~~--------  250 (323)
T 3qup_A          182 GLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAE---IYN--------  250 (323)
T ss_dssp             CC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG---HHH--------
T ss_pred             cccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChHH---HHH--------
Confidence            9987543222     23345667999999998889999999999999999999 999997552211   000        


Q ss_pred             hhhhhhhhc--CCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          213 NRELNKLVR--GTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       213 ~~~~~~~~~--~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                           ....  ....+...++.+.+++.+||+.||++|| +.|+++.|
T Consensus       251 -----~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l  293 (323)
T 3qup_A          251 -----YLIGGNRLKQPPECMEEVYDLMYQCWSADPKQRPSFTCLRMEL  293 (323)
T ss_dssp             -----HHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHH
T ss_pred             -----HHhcCCCCCCCCccCHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence                 1111  1123445567899999999999999999 99998764

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=100.00  E-value=3.1e-38  Score=267.66  Aligned_cols=229  Identities=19%  Similarity=0.250  Sum_probs=179.5

Q ss_pred             ccccceeeecc------cCCCCCeeeccc----------hhhhHHHHhHhhhccccccc-cCCceeeeceeeeecCceeE
Q 044568            4 TKLSNFYRSSF------NARNSPWISRVS----------WTADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVSGK   66 (257)
Q Consensus         4 ~~~~~~y~~~~------~~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~~l   66 (257)
                      +.++.||+++.      .++..+++|...          +.+|++.+.         ++ .|+||+++.+.+...+..++
T Consensus        34 G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~---------~l~~h~~i~~~~~~~~~~~~~~l  104 (313)
T 1t46_A           34 GAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLS---------YLGNHMNIVNLLGACTIGGPTLV  104 (313)
T ss_dssp             CSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHH---------HHCCCTTBCCEEEEECSSSSCEE
T ss_pred             cCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHh---------hcccCCCeeeEEEEEecCCCcEE
Confidence            56889999974      344566777654          234444444         66 79999999999999999999


Q ss_pred             EEeecCCCCHHHHHhccCC----------------CCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCC
Q 044568           67 IERPVRNGSLTDIIFCSAE----------------RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF  130 (257)
Q Consensus        67 V~E~~~~gsL~~~l~~~~~----------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~  130 (257)
                      ||||+++|+|.+++.....                ..+++.++..++.|++.||.|||++   +++|+||||+||+++.+
T Consensus       105 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~  181 (313)
T 1t46_A          105 ITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNILLTHG  181 (313)
T ss_dssp             EEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEETT
T ss_pred             EEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCccceEEEcCC
Confidence            9999999999999975322                2489999999999999999999999   99999999999999999


Q ss_pred             CceEEeeecccccCCCCc-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHH
Q 044568          131 WTAKILDFGLAKLPNEDF-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILT  204 (257)
Q Consensus       131 ~~~kl~dfg~~~~~~~~~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~  204 (257)
                      +.+||+|||++.......     ....+++.|+|||.+.+..++.++||||||+++|||++ |..||........   ..
T Consensus       182 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~---~~  258 (313)
T 1t46_A          182 RITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSK---FY  258 (313)
T ss_dssp             TEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHH---HH
T ss_pred             CCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccchhH---HH
Confidence            999999999987654332     12334567999999998889999999999999999999 9999976532221   11


Q ss_pred             HHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          205 NWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ...         ..... ...+...+..+.+++.+||+.||.+|| +.|+++.|
T Consensus       259 ~~~---------~~~~~-~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L  302 (313)
T 1t46_A          259 KMI---------KEGFR-MLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLI  302 (313)
T ss_dssp             HHH---------HHTCC-CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             HHh---------ccCCC-CCCcccCCHHHHHHHHHHcCCCchhCcCHHHHHHHH
Confidence            100         00011 122334557899999999999999999 99998864

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=100.00  E-value=4.5e-38  Score=271.63  Aligned_cols=224  Identities=18%  Similarity=0.153  Sum_probs=178.3

Q ss_pred             ccccceeeecc-cCCCCCeeeccc------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSF-NARNSPWISRVS------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~-~~~~~~~i~~~~------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||+++. .++..+++|...            +.+|++.+.         +++|+|++++.+.+...+..++||||
T Consensus        65 G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~---------~l~hpniv~~~~~~~~~~~~~lv~e~  135 (348)
T 1u5q_A           65 GSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQ---------KLRHPNTIQYRGCYLREHTAWLVMEY  135 (348)
T ss_dssp             CSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHH---------HCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             CCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHH---------hCCCCCEeeEEEEEEECCeEEEEEec
Confidence            56899999985 566677888754            234444444         78899999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCccc
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVI  150 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~~  150 (257)
                      +. |+|.+.+.. ....+++.++..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++..... ...
T Consensus       136 ~~-g~l~~~l~~-~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~-~~~  209 (348)
T 1u5q_A          136 CL-GSASDLLEV-HKKPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP-ANS  209 (348)
T ss_dssp             CS-EEHHHHHHH-HTSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTEEEECCCTTCBSSSS-BCC
T ss_pred             CC-CCHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEeeccCceecCC-CCc
Confidence            97 689888864 456799999999999999999999999   999999999999999999999999999876543 345


Q ss_pred             ccCCCCccCccccc---CCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCH
Q 044568          151 DKRDKGYMAPECYK---RTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDK  227 (257)
Q Consensus       151 ~~~~~~~~aPE~~~---~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (257)
                      ..+|+.|+|||.+.   ...++.++||||||+++|||++|+.||......   ......          .....+...+.
T Consensus       210 ~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~---~~~~~~----------~~~~~~~~~~~  276 (348)
T 1u5q_A          210 FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAM---SALYHI----------AQNESPALQSG  276 (348)
T ss_dssp             CCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH---HHHHHH----------HHSCCCCCCCT
T ss_pred             ccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChH---HHHHHH----------HhcCCCCCCCC
Confidence            57899999999985   567899999999999999999999999754211   111000          00011112233


Q ss_pred             HHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          228 KNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       228 ~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ..++.+.+++.+||+.||++|| ++|+++
T Consensus       277 ~~~~~l~~li~~~l~~dP~~Rps~~~ll~  305 (348)
T 1u5q_A          277 HWSEYFRNFVDSCLQKIPQDRPTSEVLLK  305 (348)
T ss_dssp             TSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             CCCHHHHHHHHHHcccChhhCcCHHHHhh
Confidence            4456789999999999999999 999975

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1e-37  Score=262.77  Aligned_cols=228  Identities=21%  Similarity=0.289  Sum_probs=176.8

Q ss_pred             ccccceeeecccCCCC----Ceeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCce-eEEE
Q 044568            4 TKLSNFYRSSFNARNS----PWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVS-GKIE   68 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~----~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~-~lV~   68 (257)
                      +.++.||++...++..    +++|...          +.+|++.+.         ++.|+|++++.+.+...+.. ++||
T Consensus        32 G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~~~~~~~~~v~  102 (298)
T 3pls_A           32 GHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMR---------GLNHPNVLALIGIMLPPEGLPHVLL  102 (298)
T ss_dssp             ETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHH---------TCCCTTBCCCCEEECCSSSCCEEEE
T ss_pred             CCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHH---------hCCCCCeeeEEEEEecCCCCcEEEE
Confidence            5789999998655543    5666543          223444444         77899999999999876655 9999


Q ss_pred             eecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC-
Q 044568           69 RPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED-  147 (257)
Q Consensus        69 E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~-  147 (257)
                      ||+.+|+|.+++.. ....+++.++..++.|++.||.|||++   +++|+||||+||+++.++.+||+|||++...... 
T Consensus       103 e~~~~~~L~~~~~~-~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~  178 (298)
T 3pls_A          103 PYMCHGDLLQFIRS-PQRNPTVKDLISFGLQVARGMEYLAEQ---KFVHRDLAARNCMLDESFTVKVADFGLARDILDRE  178 (298)
T ss_dssp             CCCTTCBHHHHHHC-TTCCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECCTTSSCTTTTGG
T ss_pred             ecccCCCHHHHHhc-cccCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCcEEeCcCCCcccccCCc
Confidence            99999999999985 567789999999999999999999999   9999999999999999999999999998754322 


Q ss_pred             ------cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc
Q 044568          148 ------FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR  221 (257)
Q Consensus       148 ------~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (257)
                            .....+++.|+|||.+.+..++.++||||||+++|+|++|..||........   .....         .. ..
T Consensus       179 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~~---~~~~~---------~~-~~  245 (298)
T 3pls_A          179 YYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFD---LTHFL---------AQ-GR  245 (298)
T ss_dssp             GGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGGG---HHHHH---------HT-TC
T ss_pred             ccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCHHH---HHHHh---------hc-CC
Confidence                  1334556779999999998999999999999999999996666543322111   10000         00 01


Q ss_pred             CCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          222 GTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       222 ~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ....+...+..+.+++.+||+.||.+|| ++|+++.|
T Consensus       246 ~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l  282 (298)
T 3pls_A          246 RLPQPEYCPDSLYQVMQQCWEADPAVRPTFRVLVGEV  282 (298)
T ss_dssp             CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCCCCccchHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence            1123344557899999999999999999 99998764

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=100.00  E-value=4.6e-38  Score=269.25  Aligned_cols=226  Identities=18%  Similarity=0.199  Sum_probs=173.0

Q ss_pred             ccccceeeecccCCC-CC----eeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEE
Q 044568            4 TKLSNFYRSSFNARN-SP----WISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIE   68 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~-~~----~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~   68 (257)
                      +.++.||++....++ .+    ++|...          +.+|++.+.         ++.|+||+++.+.+...+ .++|+
T Consensus        26 G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~---------~l~hp~iv~~~~~~~~~~-~~~v~   95 (327)
T 3lzb_A           26 GAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMA---------SVDNPHVCRLLGICLTST-VQLIT   95 (327)
T ss_dssp             CSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHT---------TCCBTTBCCCCEEEESSS-EEEEE
T ss_pred             CCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHH---------hCCCCCeeEEEEEEecCC-ceEEE
Confidence            578999999965444 33    444331          344555555         788999999999988654 78899


Q ss_pred             eecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc
Q 044568           69 RPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF  148 (257)
Q Consensus        69 E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~  148 (257)
                      ||+.+|+|.+++.. ....+++..+..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++.......
T Consensus        96 ~~~~~g~L~~~l~~-~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~~~~  171 (327)
T 3lzb_A           96 QLMPFGCLLDYVRE-HKDNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEE  171 (327)
T ss_dssp             CCCSSCBHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCTTC--------
T ss_pred             EecCCCcHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHhhC---CCcCCCCCHHHEEEcCCCCEEEccCcceeEccCcc
Confidence            99999999999986 566799999999999999999999999   99999999999999999999999999987543222


Q ss_pred             -----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcC
Q 044568          149 -----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRG  222 (257)
Q Consensus       149 -----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (257)
                           ....++..|+|||.+.+..++.++||||||+++|||++ |..||........    ...         . .....
T Consensus       172 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~----~~~---------~-~~~~~  237 (327)
T 3lzb_A          172 KEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEI----SSI---------L-EKGER  237 (327)
T ss_dssp             --------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGH----HHH---------H-HTTCC
T ss_pred             ccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH----HHH---------H-HcCCC
Confidence                 23344667999999999999999999999999999999 9999975522110    000         0 00011


Q ss_pred             CCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          223 TKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       223 ~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ...+...+..+.+++.+||+.||.+|| +.|+++.|
T Consensus       238 ~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L  273 (327)
T 3lzb_A          238 LPQPPICTIDVYMIMRKCWMIDADSRPKFRELIIEF  273 (327)
T ss_dssp             CCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence            123444567799999999999999999 99998764

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=100.00  E-value=2.6e-39  Score=282.03  Aligned_cols=222  Identities=14%  Similarity=0.094  Sum_probs=169.9

Q ss_pred             ccccceeeecc-cCCCCCeeeccc------------hhhhHHHHhHhhhccccccccCCceeeec-------eeeeecC-
Q 044568            4 TKLSNFYRSSF-NARNSPWISRVS------------WTADIEVLSVAMRGSKCTRIRGGLLLNVP-------VRAKLTS-   62 (257)
Q Consensus         4 ~~~~~~y~~~~-~~~~~~~i~~~~------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~-------~~~~~~~-   62 (257)
                      +.++.||+++. .+++.+++|...            +.+|++.+.      .+.++.|+||+++.       +.+...+ 
T Consensus        84 G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~------~l~~l~hpniv~~~~~~~~~~~~~~~~~~  157 (377)
T 3byv_A           84 EDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLR------LLRGIKNQKQAKVHLRFIFPFDLVKDPQK  157 (377)
T ss_dssp             ETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGG------GSTTCCSHHHHHHHHCBCCCSEEEECTTS
T ss_pred             CCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHH------hccccCCHHHHHHHhhhhhhhhhhhccCC
Confidence            57899999996 457788888754            234443333      45577899999887       4444332 


Q ss_pred             ----------------ceeEEEeecCCCCHHHHHhccC-----CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCC
Q 044568           63 ----------------VSGKIERPVRNGSLTDIIFCSA-----ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIK  121 (257)
Q Consensus        63 ----------------~~~lV~E~~~~gsL~~~l~~~~-----~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~  121 (257)
                                      ..+|||||+ +|+|.+++....     ...+++..+..++.|++.||.|||++   +|+|||||
T Consensus       158 ~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrDik  233 (377)
T 3byv_A          158 KKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---GLVHTYLR  233 (377)
T ss_dssp             CSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHT---TEECSCCC
T ss_pred             ccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhC---CeecCCCC
Confidence                            378999999 589999997421     12234578888999999999999999   99999999


Q ss_pred             CCceeeCCCCceEEeeecccccCCCCcccccCCCCccCcccccCC-----------CCCccccchhHHHHHHHHHhcCCC
Q 044568          122 PQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMAPECYKRT-----------PISVKADVYGYGIVLLETICCRKN  190 (257)
Q Consensus       122 ~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~aPE~~~~~-----------~~~~~~Di~s~G~~l~el~~g~~p  190 (257)
                      |+||+++.++.+||+|||+++..........+ +.|+|||.+.+.           .++.++||||||+++|||++|+.|
T Consensus       234 p~NIll~~~~~~kL~DFG~a~~~~~~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~elltg~~P  312 (377)
T 3byv_A          234 PVDIVLDQRGGVFLTGFEHLVRDGARVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLP  312 (377)
T ss_dssp             GGGEEECTTCCEEECCGGGCEETTCEEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHHHHHSSCC
T ss_pred             HHHEEEcCCCCEEEEechhheecCCcccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHHHHHHHHHCCCC
Confidence            99999999999999999999876665566677 899999999877           799999999999999999999999


Q ss_pred             CCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          191 MEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       191 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      |........                .......   ....++.+.+++.+||+.||++|| +.|+++
T Consensus       313 f~~~~~~~~----------------~~~~~~~---~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~  359 (377)
T 3byv_A          313 ITKDAALGG----------------SEWIFRS---CKNIPQPVRALLEGFLRYPKEDRLLPLQAME  359 (377)
T ss_dssp             C------CC----------------SGGGGSS---CCCCCHHHHHHHHHHTCSSGGGCCCHHHHHT
T ss_pred             Ccccccccc----------------hhhhhhh---ccCCCHHHHHHHHHHcCCCchhCCCHHHHhh
Confidence            975421110                0111111   122346788999999999999999 999975

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=100.00  E-value=1e-37  Score=266.14  Aligned_cols=222  Identities=18%  Similarity=0.202  Sum_probs=179.7

Q ss_pred             ccccceeeecccC-CCCCeeeccc---------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEE
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS---------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~---------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV   67 (257)
                      +.++.||+++... +..+++|...               +.+|++.+.         ++.|+|++++.+.+...+..++|
T Consensus        23 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~~~~~~~lv   93 (321)
T 2a2a_A           23 GQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILR---------QVLHHNVITLHDVYENRTDVVLI   93 (321)
T ss_dssp             CSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHH---------HCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHH---------hCCCCCcceEEEEEecCCEEEEE
Confidence            5789999999764 5566776542               345555555         78899999999999999999999


Q ss_pred             EeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCC----ceEEeeeccccc
Q 044568           68 ERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW----TAKILDFGLAKL  143 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~----~~kl~dfg~~~~  143 (257)
                      |||+++++|.+++.  ....+++..+..++.|++.||.|||++   +++|+||+|+||+++.++    .++|+|||++..
T Consensus        94 ~e~~~~~~L~~~l~--~~~~~~~~~~~~i~~qi~~aL~~lH~~---~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~~  168 (321)
T 2a2a_A           94 LELVSGGELFDFLA--QKESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHE  168 (321)
T ss_dssp             ECCCCSCBHHHHHH--TCSCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCCEEECCCTTCEE
T ss_pred             EEcCCCCcHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCChHHEEEecCCCCcCCEEEccCcccee
Confidence            99999999999997  456789999999999999999999999   999999999999999887    799999999875


Q ss_pred             CCCC--cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc
Q 044568          144 PNED--FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR  221 (257)
Q Consensus       144 ~~~~--~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (257)
                      ....  .....+|+.|+|||.+.+..++.++||||||+++|+|++|..||.....   .......             ..
T Consensus       169 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~---~~~~~~i-------------~~  232 (321)
T 2a2a_A          169 IEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK---QETLANI-------------TS  232 (321)
T ss_dssp             CCTTCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH---HHHHHHH-------------HT
T ss_pred             cCccccccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCH---HHHHHHH-------------Hh
Confidence            4432  2445688899999999988899999999999999999999999975421   1111111             00


Q ss_pred             CC-CCC----HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          222 GT-KVD----KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       222 ~~-~~~----~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .. ..+    ...+..+.+++.+||+.||++|| +.|+++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~  272 (321)
T 2a2a_A          233 VSYDFDEEFFSHTSELAKDFIRKLLVKETRKRLTIQEALR  272 (321)
T ss_dssp             TCCCCCHHHHTTCCHHHHHHHHTTSCSSTTTSCCHHHHHH
T ss_pred             cccccChhhhcccCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence            00 111    12346789999999999999999 999986

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=5.3e-38  Score=273.53  Aligned_cols=227  Identities=19%  Similarity=0.173  Sum_probs=176.1

Q ss_pred             ccccceeeecccCCC-CCeeeccchhhhH---HHHhH-hhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHH
Q 044568            4 TKLSNFYRSSFNARN-SPWISRVSWTADI---EVLSV-AMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTD   78 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~-~~~i~~~~~~~~~---~~~~~-~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~   78 (257)
                      +.++.||+++...++ .+++|...-....   +...+ ......+..+.|+||+++.+.+...+..++||||+++|+|.+
T Consensus        49 G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~lv~E~~~gg~L~~  128 (373)
T 2r5t_A           49 GSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYINGGELFY  128 (373)
T ss_dssp             CTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHH
T ss_pred             CCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEEEEeCCCCCcHHH
Confidence            578999999976644 4677765432111   11111 111112346889999999999999999999999999999999


Q ss_pred             HHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccC---CCCcccccCCC
Q 044568           79 IIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLP---NEDFVIDKRDK  155 (257)
Q Consensus        79 ~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~---~~~~~~~~~~~  155 (257)
                      ++.  ....+++..+..++.|++.||.|||++   +|+||||||+||+++.++.+||+|||+++..   ........||+
T Consensus       129 ~l~--~~~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~~~~~~~~~~gt~  203 (373)
T 2r5t_A          129 HLQ--RERCFLEPRARFYAAEIASALGYLHSL---NIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNSTTSTFCGTP  203 (373)
T ss_dssp             HHH--HHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCBCGGGBCCCCCCCSBSCCC
T ss_pred             HHH--hcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEeeCccccccccCCCccccccCCc
Confidence            997  346789999999999999999999999   9999999999999999999999999998742   22335567899


Q ss_pred             CccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc-CCCCCHHHHHHHH
Q 044568          156 GYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR-GTKVDKKNLENLV  234 (257)
Q Consensus       156 ~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~  234 (257)
                      .|+|||.+.+..++.++|+||||+++|||++|..||.....   ......             +.. ...++......+.
T Consensus       204 ~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~---~~~~~~-------------i~~~~~~~~~~~~~~~~  267 (373)
T 2r5t_A          204 EYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNT---AEMYDN-------------ILNKPLQLKPNITNSAR  267 (373)
T ss_dssp             CCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBH---HHHHHH-------------HHHSCCCCCSSSCHHHH
T ss_pred             cccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCH---HHHHHH-------------HHhcccCCCCCCCHHHH
Confidence            99999999999999999999999999999999999975421   111111             111 1123344557789


Q ss_pred             HHHHHcccCCCCCCC-hH
Q 044568          235 KVGLWCVQDEPALRP-MK  251 (257)
Q Consensus       235 ~l~~~cl~~~p~~RP-~~  251 (257)
                      +++.+||+.||.+|| +.
T Consensus       268 ~li~~lL~~dp~~R~~~~  285 (373)
T 2r5t_A          268 HLLEGLLQKDRTKRLGAK  285 (373)
T ss_dssp             HHHHHHTCSSGGGSTTTT
T ss_pred             HHHHHHcccCHHhCCCCC
Confidence            999999999999999 74

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=9e-38  Score=267.44  Aligned_cols=245  Identities=20%  Similarity=0.171  Sum_probs=176.7

Q ss_pred             ccccceeeecccCCCCCeeeccchhhhHHHHhHhhhccccccccCCceeeeceeeeec----CceeEEEeecCCCCHHHH
Q 044568            4 TKLSNFYRSSFNARNSPWISRVSWTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT----SVSGKIERPVRNGSLTDI   79 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~----~~~~lV~E~~~~gsL~~~   79 (257)
                      +.++.||+++.. +..+++|................- ....+.|+||+++.+.+...    ...++||||+++|+|.++
T Consensus        48 G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~e~~~~-~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~  125 (337)
T 3mdy_A           48 GRYGEVWMGKWR-GEKVAVKVFFTTEEASWFRETEIY-QTVLMRHENILGFIAADIKGTGSWTQLYLITDYHENGSLYDY  125 (337)
T ss_dssp             ETTEEEEEEEET-TEEEEEEEEEGGGHHHHHHHHHHH-TSTTCCCTTBCCEEEEEEESCGGGCEEEEEECCCTTCBHHHH
T ss_pred             CCCeEEEEEEEC-CceEEEEEEeccccchhhhHHHHH-HHHhhcCCCeeeEEEEEccCCCCCCceEEEEeccCCCcHHHH
Confidence            578999999875 778888876543222221111111 12245899999999998877    688999999999999999


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHhhCC-----CCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc------
Q 044568           80 IFCSAERNPYWNQRVRIALDVAKGILYLHDEC-----EPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF------  148 (257)
Q Consensus        80 l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~-----~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~------  148 (257)
                      +..   ..+++.++..++.|++.||.|||+++     ..+++||||||+||+++.++.+||+|||++.......      
T Consensus       126 l~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~  202 (337)
T 3mdy_A          126 LKS---TTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIP  202 (337)
T ss_dssp             HHH---CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEECC---------
T ss_pred             hhc---cCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEEEeCCCceeeccccccccCC
Confidence            964   46999999999999999999999751     2389999999999999999999999999986543222      


Q ss_pred             -ccccCCCCccCcccccCCCCCcc------ccchhHHHHHHHHHhc----------CCCCCcCCCChhhH-HHHHHHHHh
Q 044568          149 -VIDKRDKGYMAPECYKRTPISVK------ADVYGYGIVLLETICC----------RKNMEIDASKPEEI-ILTNWVYKC  210 (257)
Q Consensus       149 -~~~~~~~~~~aPE~~~~~~~~~~------~Di~s~G~~l~el~~g----------~~pf~~~~~~~~~~-~~~~~~~~~  210 (257)
                       ....+|+.|+|||.+.+...+..      +||||||+++|||++|          ..||.......... .....    
T Consensus       203 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~----  278 (337)
T 3mdy_A          203 PNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDPSYEDMREI----  278 (337)
T ss_dssp             CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHH----
T ss_pred             CCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHhhhcCCCCchhhhHHH----
Confidence             23468899999999987765554      9999999999999999          56665432221110 00000    


Q ss_pred             hhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          211 FINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ..........+....+..+++.+.+++.+||+.||.+|| +.|+++.|
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L  326 (337)
T 3mdy_A          279 VCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTL  326 (337)
T ss_dssp             HTTSCCCCCCCGGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHH
T ss_pred             HhhhccCccccccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHH
Confidence            000000000000011336788899999999999999999 99998864

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=100.00  E-value=1.3e-38  Score=272.24  Aligned_cols=239  Identities=18%  Similarity=0.206  Sum_probs=180.2

Q ss_pred             ccccceeeecc-----cCCCCCeeeccc---------hhhhHHHHhHhhhccccccccCCceeeeceeee--ecCceeEE
Q 044568            4 TKLSNFYRSSF-----NARNSPWISRVS---------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAK--LTSVSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~-----~~~~~~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~--~~~~~~lV   67 (257)
                      +.++.||++++     .++..+++|...         +.+|++.+.         ++.|+|++++.+.+.  ..+..++|
T Consensus        34 G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~---------~l~h~~i~~~~~~~~~~~~~~~~lv  104 (327)
T 3lxl_A           34 GNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILK---------ALHSDFIVKYRGVSYGPGRQSLRLV  104 (327)
T ss_dssp             ETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHH---------TCCCTTBCCEEEEEECSSSCEEEEE
T ss_pred             CCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHH---------hcCCCceeEEEEEEecCCCceEEEE
Confidence            56889999984     455567777654         344555555         779999999999876  45668899


Q ss_pred             EeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC
Q 044568           68 ERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED  147 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~  147 (257)
                      |||+++|+|.+++.. ....+++.++..++.|++.||.|||++   +++|+||||+||+++.++.+||+|||.+......
T Consensus       105 ~e~~~~~~L~~~l~~-~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~  180 (327)
T 3lxl_A          105 MEYLPSGCLRDFLQR-HRARLDASRLLLYSSQICKGMEYLGSR---RCVHRDLAARNILVESEAHVKIADFGLAKLLPLD  180 (327)
T ss_dssp             EECCTTCBHHHHHHH-HGGGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCGGGCEECCTT
T ss_pred             EeecCCCCHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChhhEEECCCCCEEEcccccceecccC
Confidence            999999999999975 345699999999999999999999999   9999999999999999999999999998754332


Q ss_pred             c------ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc
Q 044568          148 F------VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR  221 (257)
Q Consensus       148 ~------~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (257)
                      .      ....++..|+|||.+.+..++.++||||||+++|+|++|..||.......  .....+.............+.
T Consensus       181 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  258 (327)
T 3lxl_A          181 KDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEF--LRMMGCERDVPALSRLLELLE  258 (327)
T ss_dssp             CSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHH--HHHCC----CCHHHHHHHHHH
T ss_pred             CccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchh--hhhcccccccccHHHHHHHhh
Confidence            2      23345667999999988888999999999999999999999997431100  000000000000011111111


Q ss_pred             ---CCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          222 ---GTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       222 ---~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                         ....+...++.+.+++.+||+.||++|| ++|+++.|
T Consensus       259 ~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L  298 (327)
T 3lxl_A          259 EGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQL  298 (327)
T ss_dssp             TTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             cccCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence               1134555678899999999999999999 99998764

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=100.00  E-value=7.5e-38  Score=261.88  Aligned_cols=226  Identities=15%  Similarity=0.173  Sum_probs=174.9

Q ss_pred             ccccceeeecccCCC----CCeeeccch----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEe
Q 044568            4 TKLSNFYRSSFNARN----SPWISRVSW----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIER   69 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~----~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E   69 (257)
                      +.++.||++......    .+++|....          .+|++.+.         ++.|+|++++.+.+.. +..++|||
T Consensus        23 G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~i~~~~~~~~~-~~~~~v~e   92 (281)
T 3cc6_A           23 GFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMK---------NLDHPHIVKLIGIIEE-EPTWIIME   92 (281)
T ss_dssp             CSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHH---------HHCCTTBCCEEEEECS-SSCEEEEE
T ss_pred             cCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHH---------hCCCCCcceEEEEEcC-CCCEEEEe
Confidence            578999999865443    267776442          23444444         7789999999998764 55689999


Q ss_pred             ecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-
Q 044568           70 PVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-  148 (257)
Q Consensus        70 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-  148 (257)
                      |+++++|.+++.. ....+++..+..++.|++.||.|||++   +++|+||+|+||+++.++.+||+|||.+....... 
T Consensus        93 ~~~~~~L~~~l~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  168 (281)
T 3cc6_A           93 LYPYGELGHYLER-NKNSLKVLTLVLYSLQICKAMAYLESI---NCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDY  168 (281)
T ss_dssp             CCTTCBHHHHHHH-HTTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEEETTEEEECCCCGGGCC-----
T ss_pred             cCCCCCHHHHHHh-ccccCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCccceEEECCCCcEEeCccCCCcccccccc
Confidence            9999999999975 456699999999999999999999999   99999999999999999999999999987544322 


Q ss_pred             ---ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCC
Q 044568          149 ---VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTK  224 (257)
Q Consensus       149 ---~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (257)
                         ....++..|+|||.+.+..++.++||||||+++|||++ |+.||........   ....          .. .....
T Consensus       169 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~~---~~~~----------~~-~~~~~  234 (281)
T 3cc6_A          169 YKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDV---IGVL----------EK-GDRLP  234 (281)
T ss_dssp             ----CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGGH---HHHH----------HH-TCCCC
T ss_pred             cccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChHHH---HHHH----------hc-CCCCC
Confidence               23345667999999988889999999999999999998 9999975422111   1000          00 01112


Q ss_pred             CCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          225 VDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       225 ~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      .+...++.+.+++.+||+.||.+|| +.|+++.|
T Consensus       235 ~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L  268 (281)
T 3cc6_A          235 KPDLCPPVLYTLMTRCWDYDPSDRPRFTELVCSL  268 (281)
T ss_dssp             CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHH
Confidence            2334567799999999999999999 99998764

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=100.00  E-value=8.3e-38  Score=265.10  Aligned_cols=238  Identities=15%  Similarity=0.143  Sum_probs=175.7

Q ss_pred             ccccceeeecccC-CCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      +.++.||++.... +..+++|...           +.+|++.+.         ++.|+|++++.+.+...+..++||||+
T Consensus        14 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~i~~~~~~~~~~~~~~lv~e~~   84 (311)
T 4agu_A           14 GSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLK---------QLKHPNLVNLLEVFRRKRRLHLVFEYC   84 (311)
T ss_dssp             CSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHH---------HCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             cCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHH---------hCCCCCccchhheeecCCeEEEEEEeC
Confidence            5789999999765 5667777542           234444444         788999999999999999999999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---c
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---F  148 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~  148 (257)
                      ++++|.+++.  ....+++..+..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||.+......   .
T Consensus        85 ~~~~l~~~~~--~~~~~~~~~~~~i~~~l~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~  159 (311)
T 4agu_A           85 DHTVLHELDR--YQRGVPEHLVKSITWQTLQAVNFCHKH---NCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSDYY  159 (311)
T ss_dssp             SEEHHHHHHH--TSSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECC------
T ss_pred             CCchHHHHHh--hhcCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCChhhEEEcCCCCEEEeeCCCchhccCccccc
Confidence            9999999987  556799999999999999999999999   9999999999999999999999999998764422   2


Q ss_pred             ccccCCCCccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHH-------Hhhhhhhhhhhh
Q 044568          149 VIDKRDKGYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVY-------KCFINRELNKLV  220 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~  220 (257)
                      ....+|..|+|||.+.+ ..++.++||||+|+++|+|++|..||.................       ..+.........
T Consensus       160 ~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (311)
T 4agu_A          160 DDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTNQYFSGV  239 (311)
T ss_dssp             ------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHTCGGGTTC
T ss_pred             CCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcccccccccccccccccccC
Confidence            34567888999999976 5689999999999999999999999976532221111111100       000000000000


Q ss_pred             ---cCCCC------CHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          221 ---RGTKV------DKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       221 ---~~~~~------~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                         ++...      ....+..+.+++.+||+.||.+|| ++|+++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  284 (311)
T 4agu_A          240 KIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLH  284 (311)
T ss_dssp             CCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHT
T ss_pred             cCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhc
Confidence               00000      012346789999999999999999 999975

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=4.7e-38  Score=276.88  Aligned_cols=226  Identities=14%  Similarity=0.127  Sum_probs=178.2

Q ss_pred             ccccceeeecccC-CCCCeeeccc------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||+++... +..+++|...            +.+|.+.+.         .+.|+||+++.+.+...+..+|||||
T Consensus        80 G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~---------~l~hp~Iv~l~~~~~~~~~~~lV~E~  150 (410)
T 3v8s_A           80 GAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMA---------FANSPWVVQLFYAFQDDRYLYMVMEY  150 (410)
T ss_dssp             CSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHH---------HCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             CCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHH---------hCCCCCCCeEEEEEEECCEEEEEEeC
Confidence            5789999999765 4556777543            234444444         77899999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc--
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF--  148 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~--  148 (257)
                      +++|+|.+++..   ..+++..+..++.|++.||.|||++   +|+||||||+||+++.++.+||+|||++.......  
T Consensus       151 ~~gg~L~~~l~~---~~~~e~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~DFG~a~~~~~~~~~  224 (410)
T 3v8s_A          151 MPGGDLVNLMSN---YDVPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMV  224 (410)
T ss_dssp             CTTEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSEE
T ss_pred             CCCCcHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeeECCCCCEEEeccceeEeeccCCcc
Confidence            999999999964   4689999999999999999999999   99999999999999999999999999997654332  


Q ss_pred             --ccccCCCCccCcccccCCC----CCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcC
Q 044568          149 --VIDKRDKGYMAPECYKRTP----ISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRG  222 (257)
Q Consensus       149 --~~~~~~~~~~aPE~~~~~~----~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (257)
                        ....||+.|+|||++.+..    ++.++||||||+++|||++|+.||.......   ......     .... . +. 
T Consensus       225 ~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~---~~~~i~-----~~~~-~-~~-  293 (410)
T 3v8s_A          225 RCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVG---TYSKIM-----NHKN-S-LT-  293 (410)
T ss_dssp             ECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHHH---HHHHHH-----THHH-H-CC-
T ss_pred             cccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChhh---HHHHHH-----hccc-c-cc-
Confidence              3557899999999998655    7899999999999999999999997552111   111110     0000 0 00 


Q ss_pred             CCCCHHHHHHHHHHHHHcccCCCCC--CC-hHHHHH
Q 044568          223 TKVDKKNLENLVKVGLWCVQDEPAL--RP-MKCAVM  255 (257)
Q Consensus       223 ~~~~~~~~~~l~~l~~~cl~~~p~~--RP-~~ei~~  255 (257)
                      .+......+.+.+++.+||+.+|.+  || ++||++
T Consensus       294 ~p~~~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~  329 (410)
T 3v8s_A          294 FPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKR  329 (410)
T ss_dssp             CCTTCCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHT
T ss_pred             CCCcccccHHHHHHHHHHccChhhhCCCCCHHHHhc
Confidence            0111234567889999999999988  99 999875

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=1.3e-37  Score=261.86  Aligned_cols=236  Identities=15%  Similarity=0.120  Sum_probs=177.1

Q ss_pred             ccccceeeecccC-CCCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      +.++.||+++... +..+++|....           .+|++.+.         ++.|+|++++.+.+...+..++||||+
T Consensus        13 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~~~~~~~lv~e~~   83 (292)
T 3o0g_A           13 GTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLK---------ELKHKNIVRLHDVLHSDKKLTLVFEFC   83 (292)
T ss_dssp             CSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHT---------TCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             CCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHh---------cCCCCCEeeEEeEEEeCCEEEEEEecC
Confidence            5789999999765 55577876542           23444444         788999999999999999999999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---c
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---F  148 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~  148 (257)
                      ++ ++.+.+.. ....+++.++..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++......   .
T Consensus        84 ~~-~l~~~~~~-~~~~l~~~~~~~~~~ql~~~l~~lH~~---~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~  158 (292)
T 3o0g_A           84 DQ-DLKKYFDS-CNGDLDPEIVKSFLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCY  158 (292)
T ss_dssp             SE-EHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCSCCSCC
T ss_pred             CC-CHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeecccceecCCccccc
Confidence            75 66666654 567799999999999999999999999   9999999999999999999999999998754422   2


Q ss_pred             ccccCCCCccCcccccCCC-CCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhh--hh---hhhhhcC
Q 044568          149 VIDKRDKGYMAPECYKRTP-ISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFIN--RE---LNKLVRG  222 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~~~-~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~  222 (257)
                      ....+|+.|+|||.+.+.. ++.++||||+|+++|||++|..||.......  .............  ..   .....+.
T Consensus       159 ~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~  236 (292)
T 3o0g_A          159 SAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVD--DQLKRIFRLLGTPTEEQWPSMTKLPDY  236 (292)
T ss_dssp             CSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHH--HHHHHHHHHHCCCCTTTCTTGGGSTTC
T ss_pred             cCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHH--HHHHHHHHHhCCCChhhhhhhcccccc
Confidence            4456788899999998765 7999999999999999999888864332111  1111111110000  00   0000000


Q ss_pred             ------------CCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          223 ------------TKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       223 ------------~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                                  ..........+.+++.+||+.||++|| ++|+++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  282 (292)
T 3o0g_A          237 KPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ  282 (292)
T ss_dssp             CCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             cccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhc
Confidence                        011223457788999999999999999 999986

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=100.00  E-value=2.9e-37  Score=264.00  Aligned_cols=245  Identities=18%  Similarity=0.142  Sum_probs=183.5

Q ss_pred             ccccceeeecc--cCCCCCeeeccc--------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCC
Q 044568            4 TKLSNFYRSSF--NARNSPWISRVS--------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRN   73 (257)
Q Consensus         4 ~~~~~~y~~~~--~~~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~   73 (257)
                      +.++.||++..  .++..+++|...        +.+|++.+......   ....|++++++.+.+...+..++||||+ +
T Consensus        25 G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~---~~~~~~~i~~~~~~~~~~~~~~lv~e~~-~  100 (339)
T 1z57_A           25 GAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEHLNTT---DPNSTFRCVQMLEWFEHHGHICIVFELL-G  100 (339)
T ss_dssp             ETTEEEEEEEETTTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHH---CTTCTTCBCCEEEEEEETTEEEEEEECC-C
T ss_pred             CCCeEEEEEEecCCCCcEEEEEEEecCCchhHHHHHHHHHHHHhhhc---CCCCceeeEeeecccccCCcEEEEEcCC-C
Confidence            56889999975  345667887654        34455555421111   1334556899999999999999999999 7


Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCC-------------------CCceE
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE-------------------FWTAK  134 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~-------------------~~~~k  134 (257)
                      ++|.+++.......+++.++..++.|++.||.|||++   +++||||||+||+++.                   ++.+|
T Consensus       101 ~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~k  177 (339)
T 1z57_A          101 LSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSN---KLTHTDLKPENILFVQSDYTEAYNPKIKRDERTLINPDIK  177 (339)
T ss_dssp             CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCCCEEEEEC----CEEEEESCCCEE
T ss_pred             CCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEeccccccccCCccccccccccCCCce
Confidence            8999999865556799999999999999999999999   9999999999999987                   66799


Q ss_pred             EeeecccccCCCCcccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHh----
Q 044568          135 ILDFGLAKLPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKC----  210 (257)
Q Consensus       135 l~dfg~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~----  210 (257)
                      |+|||.+...........+|+.|+|||.+.+..++.++||||||+++|||++|..||.................+.    
T Consensus       178 l~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~p~~~  257 (339)
T 1z57_A          178 VVDFGSATYDDEHHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKEHLAMMERILGPLPKHM  257 (339)
T ss_dssp             ECCCSSCEETTSCCCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHHHHHHHHHHHHCSCCHHH
T ss_pred             EeeCcccccCccccccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHH
Confidence            9999999876666666788999999999998889999999999999999999999997652221111111100000    


Q ss_pred             -------------------------hhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          211 -------------------------FINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       211 -------------------------~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                                               ........+...........+.+.+++.+||+.||.+|| ++|+++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~  328 (339)
T 1z57_A          258 IQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLREALK  328 (339)
T ss_dssp             HHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             HhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCcccccCHHHHhc
Confidence                                     000000011111123445678899999999999999999 999975

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=100.00  E-value=1.9e-37  Score=258.37  Aligned_cols=227  Identities=20%  Similarity=0.175  Sum_probs=179.2

Q ss_pred             cccccceeeeccc-CCCCCeeeccch----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            3 CTKLSNFYRSSFN-ARNSPWISRVSW----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         3 ~~~~~~~y~~~~~-~~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      .+.++.||++... +++.+++|....          .+|++.+.         .+.|+|++++.+.+...+..++||||+
T Consensus        17 ~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~---------~l~h~~i~~~~~~~~~~~~~~lv~e~~   87 (276)
T 2yex_A           17 EGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINK---------MLNHENVVKFYGHRREGNIQYLFLEYC   87 (276)
T ss_dssp             ECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHH---------TCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             cCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHH---------hcCCCCceeeeeEEEcCCEEEEEEEec
Confidence            3578999999876 566677876542          23333333         778999999999999999999999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC----
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED----  147 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~----  147 (257)
                      ++++|.+++.  ....+++.++..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||.+......    
T Consensus        88 ~~~~L~~~l~--~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~  162 (276)
T 2yex_A           88 SGGELFDRIE--PDIGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRER  162 (276)
T ss_dssp             TTEEGGGGSB--TTTBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEEC
T ss_pred             CCCcHHHHHh--hccCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCChHHEEEccCCCEEEeeCCCccccCCCcchh
Confidence            9999999997  456799999999999999999999999   9999999999999999999999999998753221    


Q ss_pred             -cccccCCCCccCcccccCCCC-CccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCC
Q 044568          148 -FVIDKRDKGYMAPECYKRTPI-SVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKV  225 (257)
Q Consensus       148 -~~~~~~~~~~~aPE~~~~~~~-~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (257)
                       .....+++.|+|||.+.+..+ +.++||||||+++|||++|..||........  ....+....          .....
T Consensus       163 ~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~--~~~~~~~~~----------~~~~~  230 (276)
T 2yex_A          163 LLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQ--EYSDWKEKK----------TYLNP  230 (276)
T ss_dssp             CBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSH--HHHHHHTTC----------TTSTT
T ss_pred             cccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHH--HHHHhhhcc----------cccCc
Confidence             234467888999999987765 7889999999999999999999976533221  111111100          00011


Q ss_pred             CHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          226 DKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       226 ~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ....+..+.+++.+||+.||.+|| ++|+++
T Consensus       231 ~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  261 (276)
T 2yex_A          231 WKKIDSAPLALLHKILVENPSARITIPDIKK  261 (276)
T ss_dssp             GGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             hhhcCHHHHHHHHHHCCCCchhCCCHHHHhc
Confidence            223456788999999999999999 999975

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=6.9e-38  Score=275.99  Aligned_cols=228  Identities=14%  Similarity=0.097  Sum_probs=176.7

Q ss_pred             ccccceeeeccc-CCCCCeeeccch------------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||+++.. +++.+++|...-            .+|.+++         ..+.|+||+++.+.+...+..+|||||
T Consensus        72 G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il---------~~~~hp~Iv~l~~~~~~~~~~~lVmE~  142 (412)
T 2vd5_A           72 GAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVL---------VNGDRRWITQLHFAFQDENYLYLVMEY  142 (412)
T ss_dssp             CSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHH---------HHSCTTTBCCEEEEEECSSEEEEEECC
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHH---------HhcCCCCeeeEEEEEeeCCEEEEEEcC
Confidence            578999999975 566778886542            2233333         377899999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc--
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF--  148 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~--  148 (257)
                      +++|+|.+++.. ....+++..+..++.|++.||.|||++   +|+||||||+|||++.++.+||+|||++.......  
T Consensus       143 ~~gg~L~~~l~~-~~~~l~~~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILld~~g~vkL~DFGla~~~~~~~~~  218 (412)
T 2vd5_A          143 YVGGDLLTLLSK-FGERIPAEMARFYLAEIVMAIDSVHRL---GYVHRDIKPDNILLDRCGHIRLADFGSCLKLRADGTV  218 (412)
T ss_dssp             CCSCBHHHHHHH-HSSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSCE
T ss_pred             CCCCcHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccCHHHeeecCCCCEEEeechhheeccCCCcc
Confidence            999999999975 345799999999999999999999999   99999999999999999999999999987654332  


Q ss_pred             --ccccCCCCccCccccc-------CCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhh
Q 044568          149 --VIDKRDKGYMAPECYK-------RTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKL  219 (257)
Q Consensus       149 --~~~~~~~~~~aPE~~~-------~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (257)
                        ....||+.|+|||++.       ...++.++|+|||||++|||++|+.||.......   ......     ..  ...
T Consensus       219 ~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~---~~~~i~-----~~--~~~  288 (412)
T 2vd5_A          219 RSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAE---TYGKIV-----HY--KEH  288 (412)
T ss_dssp             ECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHH---HHHHHH-----TH--HHH
T ss_pred             ccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHHH---HHHHHH-----hc--ccC
Confidence              2357899999999987       3568999999999999999999999997552111   111110     00  000


Q ss_pred             hcCCCCCHHHHHHHHHHHHHcccCCCCCC---C-hHHHHH
Q 044568          220 VRGTKVDKKNLENLVKVGLWCVQDEPALR---P-MKCAVM  255 (257)
Q Consensus       220 ~~~~~~~~~~~~~l~~l~~~cl~~~p~~R---P-~~ei~~  255 (257)
                      ......+...++.+.+++.+||. +|.+|   | ++|+++
T Consensus       289 ~~~p~~~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~  327 (412)
T 2vd5_A          289 LSLPLVDEGVPEEARDFIQRLLC-PPETRLGRGGAGDFRT  327 (412)
T ss_dssp             CCCC----CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHT
T ss_pred             cCCCccccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhc
Confidence            11111123345778999999999 99998   7 888764

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=100.00  E-value=1.1e-37  Score=261.31  Aligned_cols=222  Identities=17%  Similarity=0.143  Sum_probs=179.5

Q ss_pred             ccccceeeecccCC-CCCeeeccc------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFNAR-NSPWISRVS------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~~~-~~~~i~~~~------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||+++...+ ..+++|...            +.+|++.+.         ++.|+|++++.+.+...+..++||||
T Consensus        25 G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~---------~l~h~~i~~~~~~~~~~~~~~lv~e~   95 (284)
T 2vgo_A           25 GKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQS---------HLRHPNILRMYNYFHDRKRIYLMLEF   95 (284)
T ss_dssp             CSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHH---------TCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             CCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHh---------cCCCCCEeeEEEEEEcCCEEEEEEEe
Confidence            57889999997654 456777653            233444444         77899999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC-Ccc
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE-DFV  149 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~-~~~  149 (257)
                      +++|+|.+++..  ...+++..+..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||++..... ...
T Consensus        96 ~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~  170 (284)
T 2vgo_A           96 APRGELYKELQK--HGRFDEQRSATFMEELADALHYCHER---KVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLRRR  170 (284)
T ss_dssp             CTTEEHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTCCEEECCCTTCEECSSSCBC
T ss_pred             CCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEEcCCCCEEEecccccccCcccccc
Confidence            999999999974  35689999999999999999999999   999999999999999999999999998865432 234


Q ss_pred             cccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc-CCCCCHH
Q 044568          150 IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR-GTKVDKK  228 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  228 (257)
                      ...+++.|+|||.+.+..++.++|+||||+++|+|++|..||.......   ...             .... ....+..
T Consensus       171 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~---~~~-------------~~~~~~~~~~~~  234 (284)
T 2vgo_A          171 TMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTE---THR-------------RIVNVDLKFPPF  234 (284)
T ss_dssp             CCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH---HHH-------------HHHTTCCCCCTT
T ss_pred             cccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHhH---HHH-------------HHhccccCCCCc
Confidence            4567889999999998889999999999999999999999997542111   000             1111 1123344


Q ss_pred             HHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          229 NLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       229 ~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .+..+.+++.+||+.||.+|| +.|+++
T Consensus       235 ~~~~~~~li~~~l~~~p~~Rps~~~ll~  262 (284)
T 2vgo_A          235 LSDGSKDLISKLLRYHPPQRLPLKGVME  262 (284)
T ss_dssp             SCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CCHHHHHHHHHHhhcCHhhCCCHHHHhh
Confidence            557789999999999999999 999975

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=100.00  E-value=6.4e-38  Score=269.93  Aligned_cols=221  Identities=18%  Similarity=0.225  Sum_probs=173.0

Q ss_pred             ccccceeeecccCCCCCeeeccc-----------hhhhHHHHhHhhhccccccccC--CceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRG--GLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h--~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||++...++..+++|...           +.+|++.+.         ++.|  +||+++.+.+...+..++||| 
T Consensus        20 G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~---------~l~~~~~~iv~~~~~~~~~~~~~lv~e-   89 (343)
T 3dbq_A           20 GGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLN---------KLQQHSDKIIRLYDYEITDQYIYMVME-   89 (343)
T ss_dssp             CSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHH---------HHTTTCTTBCCEEEEEECSSEEEEEEC-
T ss_pred             CCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHH---------hhhhcCCceEEEeeeEeeCCEEEEEEe-
Confidence            67899999999888888988654           234555444         5555  899999999999999999999 


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc--
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF--  148 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~--  148 (257)
                      +.+|+|.+++.  ....+++.++..++.|++.||.|||++   +|+||||||+||+++ ++.+||+|||++.......  
T Consensus        90 ~~~~~L~~~l~--~~~~~~~~~~~~i~~qi~~al~~lH~~---~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~~~~  163 (343)
T 3dbq_A           90 CGNIDLNSWLK--KKKSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTS  163 (343)
T ss_dssp             CCSEEHHHHHH--HSCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEE-TTEEEECCCSSSCCC------
T ss_pred             CCCCCHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEEE-CCcEEEeecccccccCccccc
Confidence            55789999998  456799999999999999999999999   999999999999997 5689999999987643322  


Q ss_pred             ---ccccCCCCccCcccccC-----------CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhh
Q 044568          149 ---VIDKRDKGYMAPECYKR-----------TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINR  214 (257)
Q Consensus       149 ---~~~~~~~~~~aPE~~~~-----------~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~  214 (257)
                         ....+|+.|+|||.+.+           ..++.++||||||+++|||++|+.||........               
T Consensus       164 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~---------------  228 (343)
T 3dbq_A          164 VVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQIS---------------  228 (343)
T ss_dssp             ------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHH---------------
T ss_pred             ccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHHH---------------
Confidence               34578999999999864           5688999999999999999999999974321110               


Q ss_pred             hhhhhhc---CCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          215 ELNKLVR---GTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       215 ~~~~~~~---~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .....++   ....+......+.+++.+||+.||.+|| +.|+++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~  273 (343)
T 3dbq_A          229 KLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLA  273 (343)
T ss_dssp             HHHHHHCTTSCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             HHHHHhcCCcccCCcccCCHHHHHHHHHHcCCChhHCCCHHHHHh
Confidence            0111111   1123344456789999999999999999 999975

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=100.00  E-value=2.1e-38  Score=271.60  Aligned_cols=249  Identities=20%  Similarity=0.237  Sum_probs=174.4

Q ss_pred             ccccceeeecccCCCCCeeeccchhhhHHHHhHhhhccccccccCCceeeeceeeee-----cCceeEEEeecCCCCHHH
Q 044568            4 TKLSNFYRSSFNARNSPWISRVSWTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL-----TSVSGKIERPVRNGSLTD   78 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~-----~~~~~lV~E~~~~gsL~~   78 (257)
                      +.++.||+++. ++..+++|.......-+........ ....+.|+|++++.+.+..     ....++||||+++|+|.+
T Consensus        24 G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~e~~~~-~~~~~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~  101 (336)
T 3g2f_A           24 GRYGAVYKGSL-DERPVAVKVFSFANRQNFINEKNIY-RVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXK  101 (336)
T ss_dssp             CSSEEEEEEEE-TTEEEEEEEEEGGGHHHHHHHHHHH-TSTTCCCTTBCCEEEEEEEECTTSCEEEEEEECCCTTCBHHH
T ss_pred             CCCeEEEEEEE-CCeEEEEEEeeccchhhHHHHHHHH-HHHhccCcchhhheecccccccCCCceEEEEEecCCCCcHHH
Confidence            57899999976 5778888887643322222211111 2335789999999875442     336689999999999999


Q ss_pred             HHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCC------CCCeeeccCCCCceeeCCCCceEEeeecccccCCCC-----
Q 044568           79 IIFCSAERNPYWNQRVRIALDVAKGILYLHDEC------EPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED-----  147 (257)
Q Consensus        79 ~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~------~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~-----  147 (257)
                      ++..   ...++..+..++.|++.||.|||++.      .++++||||||+||+++.++.+||+|||++......     
T Consensus       102 ~l~~---~~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~DFG~a~~~~~~~~~~~  178 (336)
T 3g2f_A          102 YLSL---HTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRP  178 (336)
T ss_dssp             HHHH---CCBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEECCCTTCEECSSSSCC--
T ss_pred             HHhh---cccchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEEEeeccceeecccccccCc
Confidence            9964   34588999999999999999999762      238999999999999999999999999998754321     


Q ss_pred             ------cccccCCCCccCcccccC-------CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhh-HHHHHHHHHhhhh
Q 044568          148 ------FVIDKRDKGYMAPECYKR-------TPISVKADVYGYGIVLLETICCRKNMEIDASKPEE-IILTNWVYKCFIN  213 (257)
Q Consensus       148 ------~~~~~~~~~~~aPE~~~~-------~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~-~~~~~~~~~~~~~  213 (257)
                            .....+|+.|+|||.+.+       ..++.++||||||+++|||++|..||......... .............
T Consensus       179 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~  258 (336)
T 3g2f_A          179 GEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTF  258 (336)
T ss_dssp             -------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCCTTHHHHCSSCCH
T ss_pred             cccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhHHHHhhhcccCCCchH
Confidence                  123468889999999976       34567899999999999999998777543221110 0000000000000


Q ss_pred             hhhhhhh---------c-CCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          214 RELNKLV---------R-GTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       214 ~~~~~~~---------~-~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      .......         + ........++.+.+++.+||+.||++|| ++|+++.|
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L  313 (336)
T 3g2f_A          259 EDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERM  313 (336)
T ss_dssp             HHHHHHHTTSCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHH
T ss_pred             HHHHhhhcccccCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHH
Confidence            0000000         0 1122334667899999999999999999 99998764

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=3.3e-37  Score=279.59  Aligned_cols=223  Identities=16%  Similarity=0.223  Sum_probs=180.0

Q ss_pred             ccccceeeeccc-CCCCCeeeccch------------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||+++.. +++.+++|...-            .+|.+.+.         ++.|+||+++.+.+...+..++||||
T Consensus       196 G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~---------~l~hp~Iv~l~~~~~~~~~l~lVmE~  266 (543)
T 3c4z_A          196 GGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILA---------KVHSRFIVSLAYAFETKTDLCLVMTI  266 (543)
T ss_dssp             CSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHH---------HCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             CCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHH---------hcCCCCEeeEEEEEeeCCEEEEEEEe
Confidence            578999999975 466678887642            22333333         77899999999999999999999999


Q ss_pred             cCCCCHHHHHhccC--CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc
Q 044568           71 VRNGSLTDIIFCSA--ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF  148 (257)
Q Consensus        71 ~~~gsL~~~l~~~~--~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~  148 (257)
                      +++|+|.+++....  ...+++..+..++.|++.||.|||++   +|+||||||+||+++.++.+||+|||++.......
T Consensus       267 ~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~---gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~~~~  343 (543)
T 3c4z_A          267 MNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQR---NIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQ  343 (543)
T ss_dssp             CTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCEECCTTC
T ss_pred             ccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHc---CCcccCCChHHEEEeCCCCEEEeecceeeeccCCC
Confidence            99999999997532  45799999999999999999999999   99999999999999999999999999997644322


Q ss_pred             ---ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhh-cCCC
Q 044568          149 ---VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLV-RGTK  224 (257)
Q Consensus       149 ---~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  224 (257)
                         ....||+.|+|||.+.+..++.++|+|||||++|||++|+.||...........+..            ... ....
T Consensus       344 ~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~~~~~~~~------------~i~~~~~~  411 (543)
T 3c4z_A          344 TKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQ------------RVLEQAVT  411 (543)
T ss_dssp             CCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCCHHHHHH------------HHHHCCCC
T ss_pred             cccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccchhHHHHHH------------HHhhcccC
Confidence               334789999999999998999999999999999999999999986533221111111            111 1123


Q ss_pred             CCHHHHHHHHHHHHHcccCCCCCCC-h
Q 044568          225 VDKKNLENLVKVGLWCVQDEPALRP-M  250 (257)
Q Consensus       225 ~~~~~~~~l~~l~~~cl~~~p~~RP-~  250 (257)
                      ++...+..+.+++.+||+.||++|| +
T Consensus       412 ~p~~~s~~~~~li~~lL~~dP~~R~~~  438 (543)
T 3c4z_A          412 YPDKFSPASKDFCEALLQKDPEKRLGF  438 (543)
T ss_dssp             CCTTSCHHHHHHHHHHSCSSGGGSCCC
T ss_pred             CCcccCHHHHHHHHHhccCCHhHCCCC
Confidence            4455667899999999999999999 7

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=100.00  E-value=3.3e-37  Score=257.27  Aligned_cols=221  Identities=15%  Similarity=0.190  Sum_probs=176.8

Q ss_pred             ccccceeeecccCCC-CCeeeccc---------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCC
Q 044568            4 TKLSNFYRSSFNARN-SPWISRVS---------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRN   73 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~-~~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~   73 (257)
                      +.++.||++....+. .+++|...         +.+|++.+.         ++.|+||+++.+.+...+..++||||+++
T Consensus        20 G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~---------~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   90 (277)
T 3f3z_A           20 GSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMK---------SLDHPNIIRLYETFEDNTDIYLVMELCTG   90 (277)
T ss_dssp             ETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHH---------TCCCTTBCCEEEEEECSSEEEEEEECCCS
T ss_pred             cCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHH---------hCCCCCEeeEEEEEecCCeEEEEEeccCC
Confidence            578999999976654 45666543         345555555         77899999999999999999999999999


Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceee---CCCCceEEeeecccccCCC--Cc
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKILDFGLAKLPNE--DF  148 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~---~~~~~~kl~dfg~~~~~~~--~~  148 (257)
                      ++|.+++.  ....+++.++..++.|++.||.|||++   +++|+||+|+||++   +.++.++|+|||.+.....  ..
T Consensus        91 ~~L~~~~~--~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~~~  165 (277)
T 3f3z_A           91 GELFERVV--HKRVFRESDAARIMKDVLSAVAYCHKL---NVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKMM  165 (277)
T ss_dssp             CBHHHHHH--HHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTTSCB
T ss_pred             CcHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEecCCCCCcEEEEecccceeccCccch
Confidence            99999997  345699999999999999999999999   99999999999999   7888999999999875432  23


Q ss_pred             ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC-CCCH
Q 044568          149 VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT-KVDK  227 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  227 (257)
                      ....+|+.|+|||.+.+. ++.++||||||+++|||++|..||.....   ......             ..... ..+.
T Consensus       166 ~~~~~t~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~---~~~~~~-------------~~~~~~~~~~  228 (277)
T 3f3z_A          166 RTKVGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAPTD---SEVMLK-------------IREGTFTFPE  228 (277)
T ss_dssp             CCCCSCTTTCCHHHHTTC-BCTTHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHH-------------HHHCCCCCCH
T ss_pred             hccCCCCCccChHHhccc-CCchhhehhHHHHHHHHHHCCCCCCCCCH---HHHHHH-------------HHhCCCCCCc
Confidence            455788999999988654 89999999999999999999999975421   111111             11111 1122


Q ss_pred             ----HHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          228 ----KNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       228 ----~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                          ..++.+.+++.+||+.||++|| +.|+++
T Consensus       229 ~~~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~  261 (277)
T 3f3z_A          229 KDWLNVSPQAESLIRRLLTKSPKQRITSLQALE  261 (277)
T ss_dssp             HHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             hhhhcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence                2356789999999999999999 999875

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=100.00  E-value=2.1e-37  Score=260.24  Aligned_cols=225  Identities=17%  Similarity=0.226  Sum_probs=173.5

Q ss_pred             ccccceeeecccCCC-CCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeee----cCceeEE
Q 044568            4 TKLSNFYRSSFNARN-SPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL----TSVSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~-~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~----~~~~~lV   67 (257)
                      +.++.||++....+. .+++|...           +.+|++.+.         ++.|+||+++.+.+..    ....++|
T Consensus        37 G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~---------~l~h~~iv~~~~~~~~~~~~~~~~~lv  107 (290)
T 1t4h_A           37 GSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLK---------GLQHPNIVRFYDSWESTVKGKKCIVLV  107 (290)
T ss_dssp             CSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHT---------TCCCTTBCCEEEEEEEESSSCEEEEEE
T ss_pred             CCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHH---------hCCCCCeeeeeeeeccccCCCceEEEE
Confidence            578999999865544 45555543           223444443         7889999999998765    3568999


Q ss_pred             EeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCC--eeeccCCCCceeeC-CCCceEEeeecccccC
Q 044568           68 ERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPP--ILHCDIKPQNILMD-EFWTAKILDFGLAKLP  144 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~--i~h~dl~~~nil~~-~~~~~kl~dfg~~~~~  144 (257)
                      |||+++|+|.+++..  ...+++..+..++.|++.||.|||++   +  ++|+||+|+||+++ .++.++|+|||++...
T Consensus       108 ~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~  182 (290)
T 1t4h_A          108 TELMTSGTLKTYLKR--FKVMKIKVLRSWCRQILKGLQFLHTR---TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLK  182 (290)
T ss_dssp             EECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHTS---SSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGC
T ss_pred             EEecCCCCHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHHHcC---CCCEEECCCCHHHEEEECCCCCEEEeeCCCcccc
Confidence            999999999999973  46789999999999999999999999   8  99999999999997 7889999999998754


Q ss_pred             CCC-cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC
Q 044568          145 NED-FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  223 (257)
Q Consensus       145 ~~~-~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (257)
                      ... .....+++.|+|||.+. ..++.++||||+|+++|+|++|+.||........   ...         .......+.
T Consensus       183 ~~~~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~---~~~---------~~~~~~~~~  249 (290)
T 1t4h_A          183 RASFAKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQ---IYR---------RVTSGVKPA  249 (290)
T ss_dssp             CTTSBEESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHH---HHH---------HHTTTCCCG
T ss_pred             cccccccccCCcCcCCHHHHh-ccCCCcchHHHHHHHHHHHHhCCCCCCCcCcHHH---HHH---------HHhccCCcc
Confidence            433 34557899999999886 4589999999999999999999999975422111   100         000111111


Q ss_pred             CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          224 KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       224 ~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ..+....+.+.+++.+||+.||.+|| ++|+++
T Consensus       250 ~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~  282 (290)
T 1t4h_A          250 SFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN  282 (290)
T ss_dssp             GGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             ccCCCCCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence            22233346799999999999999999 999986

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=100.00  E-value=2e-37  Score=259.33  Aligned_cols=227  Identities=16%  Similarity=0.130  Sum_probs=177.8

Q ss_pred             ccccceeeecccC-CCCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      +.++.||++.... +..+++|....           .+|++.+.         ++.|+|++++.+.+...+..++||||+
T Consensus        17 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~---------~l~h~~i~~~~~~~~~~~~~~~v~e~~   87 (284)
T 3kk8_A           17 GAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICR---------KLQHPNIVRLHDSIQEESFHYLVFDLV   87 (284)
T ss_dssp             ETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHH---------HCCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred             cCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHH---------HcCCCCcCeEEEEEEcCCEEEEEEecC
Confidence            5788999998654 55667776432           23444444         778999999999999999999999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCc---eEEeeecccccCCCCc
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT---AKILDFGLAKLPNEDF  148 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~---~kl~dfg~~~~~~~~~  148 (257)
                      ++|+|.+.+..  ...+++.++..++.|++.||.|||++   +++|+||+|+||+++.++.   +||+|||.+.......
T Consensus        88 ~~~~l~~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~  162 (284)
T 3kk8_A           88 TGGELFEDIVA--REFYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSE  162 (284)
T ss_dssp             CSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCSSC
T ss_pred             CCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcccCc
Confidence            99999999873  46699999999999999999999999   9999999999999976554   9999999987544332


Q ss_pred             --ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCC
Q 044568          149 --VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVD  226 (257)
Q Consensus       149 --~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (257)
                        ....+++.|+|||.+.+..++.++||||+|+++|+|++|..||......   ........     .   ....+....
T Consensus       163 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~---~~~~~~~~-----~---~~~~~~~~~  231 (284)
T 3kk8_A          163 AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQH---RLYAQIKA-----G---AYDYPSPEW  231 (284)
T ss_dssp             BCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH---HHHHHHHH-----T---CCCCCTTTT
T ss_pred             cccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchh---HHHHHHHh-----c---cccCCchhh
Confidence              3457888999999999988999999999999999999999999754211   11111100     0   000011112


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          227 KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       227 ~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ...++.+.+++.+||+.||++|| ++|+++
T Consensus       232 ~~~~~~~~~li~~~l~~dp~~Rps~~~~l~  261 (284)
T 3kk8_A          232 DTVTPEAKSLIDSMLTVNPKKRITADQALK  261 (284)
T ss_dssp             TTSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             cccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence            23456789999999999999999 999975

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=100.00  E-value=1.1e-37  Score=267.23  Aligned_cols=228  Identities=18%  Similarity=0.208  Sum_probs=177.2

Q ss_pred             ccccceeeeccc--------CCCCCeeeccch----------hhhHHHHhHhhhccccccc-cCCceeeeceeeeecCce
Q 044568            4 TKLSNFYRSSFN--------ARNSPWISRVSW----------TADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVS   64 (257)
Q Consensus         4 ~~~~~~y~~~~~--------~~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~   64 (257)
                      +.++.||+++..        ++..+++|....          .+|++.+.         ++ .|+||+++.+.+...+..
T Consensus        46 G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~---------~l~~hp~iv~~~~~~~~~~~~  116 (334)
T 2pvf_A           46 GAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMK---------MIGKHKNIINLLGACTQDGPL  116 (334)
T ss_dssp             CSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHH---------HHCCCTTBCCEEEEECSSSCC
T ss_pred             cCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHH---------HhhcCCCEeeEEEEEccCCce
Confidence            578999999864        344577776542          23333333         55 799999999999999999


Q ss_pred             eEEEeecCCCCHHHHHhccC--------------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCC
Q 044568           65 GKIERPVRNGSLTDIIFCSA--------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF  130 (257)
Q Consensus        65 ~lV~E~~~~gsL~~~l~~~~--------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~  130 (257)
                      ++||||+++|+|.+++....              ...+++.++..++.|++.||.|||++   +++|+||||+||+++.+
T Consensus       117 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~  193 (334)
T 2pvf_A          117 YVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLVTEN  193 (334)
T ss_dssp             EEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTT
T ss_pred             EEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCccceEEEcCC
Confidence            99999999999999997532              13489999999999999999999999   99999999999999999


Q ss_pred             CceEEeeecccccCCCCc-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHH
Q 044568          131 WTAKILDFGLAKLPNEDF-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILT  204 (257)
Q Consensus       131 ~~~kl~dfg~~~~~~~~~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~  204 (257)
                      +.+||+|||++.......     ....+++.|+|||.+.+..++.++||||||+++|||++ |..||......   . ..
T Consensus       194 ~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~---~-~~  269 (334)
T 2pvf_A          194 NVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVE---E-LF  269 (334)
T ss_dssp             CCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCHH---H-HH
T ss_pred             CCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCHH---H-HH
Confidence            999999999987544322     23345667999999988889999999999999999999 99999754111   0 10


Q ss_pred             HHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          205 NWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ...         ... .....+...+..+.+++.+||+.||.+|| +.|+++.|
T Consensus       270 ~~~---------~~~-~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L  313 (334)
T 2pvf_A          270 KLL---------KEG-HRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDL  313 (334)
T ss_dssp             HHH---------HHT-CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             HHH---------hcC-CCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence            000         000 01123344567899999999999999999 99998764

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=100.00  E-value=8e-38  Score=263.06  Aligned_cols=225  Identities=18%  Similarity=0.244  Sum_probs=175.8

Q ss_pred             ccccceeeeccc---CCCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEe
Q 044568            4 TKLSNFYRSSFN---ARNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIER   69 (257)
Q Consensus         4 ~~~~~~y~~~~~---~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E   69 (257)
                      +.++.||++...   .+..+++|...           +.+|++.+.         .+.|+|++++.+.+ ..+..++|||
T Consensus        28 G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~---------~l~h~~i~~~~~~~-~~~~~~lv~e   97 (291)
T 1xbb_A           28 GNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQ---------QLDNPYIVRMIGIC-EAESWMLVME   97 (291)
T ss_dssp             CSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHH---------TCCCTTBCCEEEEE-ESSSEEEEEE
T ss_pred             ccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHH---------hCCCCCEEEEEEEE-CCCCcEEEEE
Confidence            578999999543   23456676543           233444444         77899999999998 6678899999


Q ss_pred             ecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-
Q 044568           70 PVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-  148 (257)
Q Consensus        70 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-  148 (257)
                      |+++++|.+++..  ...+++.++..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||++....... 
T Consensus        98 ~~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  172 (291)
T 1xbb_A           98 MAELGPLNKYLQQ--NRHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADEN  172 (291)
T ss_dssp             CCTTEEHHHHHHH--CTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCS
T ss_pred             eCCCCCHHHHHHh--CcCCCHHHHHHHHHHHHHHHHHHHhC---CeEcCCCCcceEEEeCCCcEEEccCCcceeeccCCC
Confidence            9999999999984  45699999999999999999999999   99999999999999999999999999987543322 


Q ss_pred             -----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcC
Q 044568          149 -----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRG  222 (257)
Q Consensus       149 -----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (257)
                           ....+++.|+|||.+.+..++.++||||||+++|||++ |..||......    .....         ... ...
T Consensus       173 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~----~~~~~---------~~~-~~~  238 (291)
T 1xbb_A          173 YYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS----EVTAM---------LEK-GER  238 (291)
T ss_dssp             EEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHH----HHHHH---------HHT-TCC
T ss_pred             cccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHH----HHHHH---------HHc-CCC
Confidence                 22234577999999988888999999999999999999 99999754211    01000         000 011


Q ss_pred             CCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          223 TKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       223 ~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ...+...+..+.+++.+||+.||.+|| +.|+++.|
T Consensus       239 ~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L  274 (291)
T 1xbb_A          239 MGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRL  274 (291)
T ss_dssp             CCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            133445667899999999999999999 99998864

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=2.2e-37  Score=281.84  Aligned_cols=223  Identities=18%  Similarity=0.207  Sum_probs=180.4

Q ss_pred             ccccceeeeccc-CCCCCeeeccch------------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||+++.. ++..+++|.+..            .+|++.+.         ++.|+||+++.+.+...+..++||||
T Consensus       195 G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~---------~l~hp~Iv~l~~~~~~~~~l~lVmEy  265 (576)
T 2acx_A          195 GGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILE---------KVNSRFVVSLAYAYETKDALCLVLTL  265 (576)
T ss_dssp             ETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHH---------HCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             CCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHH---------HcCCCCEeeEEEEEeeCCEEEEEEEc
Confidence            568999999975 566677876542            23333333         78899999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC--c
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED--F  148 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~--~  148 (257)
                      +++|+|.+++.......+++..+..++.|++.||.|||++   +|+||||||+||+++.++.+||+|||++......  .
T Consensus       266 ~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~---gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~~~~~  342 (576)
T 2acx_A          266 MNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRE---RIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTI  342 (576)
T ss_dssp             CCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCEECCTTCCE
T ss_pred             CCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCchheEEEeCCCCeEEEecccceecccCccc
Confidence            9999999999864556699999999999999999999999   9999999999999999999999999999765332  3


Q ss_pred             ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHH
Q 044568          149 VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKK  228 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (257)
                      ....||+.|+|||++.+..++.++|||||||++|||++|..||...........+....         .  ..+..++..
T Consensus       343 ~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~~i---------~--~~~~~~p~~  411 (576)
T 2acx_A          343 KGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLV---------K--EVPEEYSER  411 (576)
T ss_dssp             ECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHHHH---------H--HCCCCCCTT
T ss_pred             cccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHh---------h--cccccCCcc
Confidence            45688999999999998889999999999999999999999998653322111111110         0  011233445


Q ss_pred             HHHHHHHHHHHcccCCCCCCC
Q 044568          229 NLENLVKVGLWCVQDEPALRP  249 (257)
Q Consensus       229 ~~~~l~~l~~~cl~~~p~~RP  249 (257)
                      ....+.+++.+||+.||.+||
T Consensus       412 ~s~~~~dLI~~lL~~dP~~R~  432 (576)
T 2acx_A          412 FSPQARSLCSQLLCKDPAERL  432 (576)
T ss_dssp             SCHHHHHHHHHHTCSSGGGST
T ss_pred             CCHHHHHHHHHhccCCHHHcC
Confidence            567899999999999999998

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=100.00  E-value=2.1e-37  Score=262.93  Aligned_cols=228  Identities=16%  Similarity=0.218  Sum_probs=170.8

Q ss_pred             ccccceeeecccCCC----CCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeecC-----c
Q 044568            4 TKLSNFYRSSFNARN----SPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTS-----V   63 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~----~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~-----~   63 (257)
                      +.++.||+++.....    .+++|....           .+|++.+.         ++.|+|++++.+.+...+     .
T Consensus        45 G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~---------~l~h~~iv~~~~~~~~~~~~~~~~  115 (313)
T 3brb_A           45 GEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMK---------DFSHPNVIRLLGVCIEMSSQGIPK  115 (313)
T ss_dssp             -CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHH---------TCCCTTBCCCCEEEEC-------C
T ss_pred             cCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHh---------cCCCCCeeeeeEEEeeccccCCcc
Confidence            578999999876543    467776542           23333333         788999999999988655     3


Q ss_pred             eeEEEeecCCCCHHHHHhcc----CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeec
Q 044568           64 SGKIERPVRNGSLTDIIFCS----AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFG  139 (257)
Q Consensus        64 ~~lV~E~~~~gsL~~~l~~~----~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg  139 (257)
                      .++||||+++|+|.+++...    ....+++.++..++.|++.||.|||++   +++||||||+||+++.++.+||+|||
T Consensus       116 ~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~~kl~Dfg  192 (313)
T 3brb_A          116 PMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNR---NFLHRDLAARNCMLRDDMTVCVADFG  192 (313)
T ss_dssp             EEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCSGGGEEECTTSCEEECSCS
T ss_pred             cEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCcEEEeecC
Confidence            49999999999999999531    446799999999999999999999999   99999999999999999999999999


Q ss_pred             ccccCCCC-----cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhh
Q 044568          140 LAKLPNED-----FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFIN  213 (257)
Q Consensus       140 ~~~~~~~~-----~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~  213 (257)
                      ++......     .....+++.|+|||.+.+..++.++||||||+++|||++ |..||.......   .....       
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~---~~~~~-------  262 (313)
T 3brb_A          193 LSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHE---MYDYL-------  262 (313)
T ss_dssp             CC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG---HHHHH-------
T ss_pred             cceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHHH---HHHHH-------
Confidence            98754322     123345667999999999899999999999999999999 889997542211   00000       


Q ss_pred             hhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          214 RELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                         ... .....+...+..+.+++.+||+.||.+|| +.++++.|
T Consensus       263 ---~~~-~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L  303 (313)
T 3brb_A          263 ---LHG-HRLKQPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQL  303 (313)
T ss_dssp             ---HTT-CCCCCBTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHH
T ss_pred             ---HcC-CCCCCCccccHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence               000 01123344567899999999999999999 99998764

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=100.00  E-value=3.1e-38  Score=270.31  Aligned_cols=229  Identities=18%  Similarity=0.209  Sum_probs=177.9

Q ss_pred             ccccceeeecccCCC------CCeeeccc----------hhhhHHHHhHhhhccccccc-cCCceeeeceeeeecCceeE
Q 044568            4 TKLSNFYRSSFNARN------SPWISRVS----------WTADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVSGK   66 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~------~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~~l   66 (257)
                      +.++.||+++....+      .+++|...          +.+|++.+.         ++ .|+||+++.+.+...+..++
T Consensus        57 G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~---------~l~~h~~iv~~~~~~~~~~~~~l  127 (333)
T 2i1m_A           57 GAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMS---------HLGQHENIVNLLGACTHGGPVLV  127 (333)
T ss_dssp             CSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH---------HHCCCTTBCCEEEEECSSSSCEE
T ss_pred             CCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHH---------hhcCCCCeeeEEEEEecCCceEE
Confidence            578899999865543      35666543          234444444         66 79999999999999999999


Q ss_pred             EEeecCCCCHHHHHhccC------------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceE
Q 044568           67 IERPVRNGSLTDIIFCSA------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAK  134 (257)
Q Consensus        67 V~E~~~~gsL~~~l~~~~------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~k  134 (257)
                      ||||+++|+|.+++....            ...+++.++..++.|++.||.|||++   +++|+||||+||+++.++.+|
T Consensus       128 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~~~k  204 (333)
T 2i1m_A          128 ITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASK---NCIHRDVAARNVLLTNGHVAK  204 (333)
T ss_dssp             EEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGCEEEGGGEEE
T ss_pred             EEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCcccceEEECCCCeEE
Confidence            999999999999997431            35689999999999999999999999   999999999999999999999


Q ss_pred             EeeecccccCCCCc-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHH
Q 044568          135 ILDFGLAKLPNEDF-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVY  208 (257)
Q Consensus       135 l~dfg~~~~~~~~~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~  208 (257)
                      |+|||++.......     ....+++.|+|||.+.+..++.++||||||+++|||++ |..||........   ......
T Consensus       205 l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~---~~~~~~  281 (333)
T 2i1m_A          205 IGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSK---FYKLVK  281 (333)
T ss_dssp             BCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSSHH---HHHHHH
T ss_pred             ECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchhHH---HHHHHh
Confidence            99999987432221     22344567999999998889999999999999999998 9999976532221   111100


Q ss_pred             HhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          209 KCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                               ... ....+...++.+.+++.+||+.||.+|| +.|+++.|
T Consensus       282 ---------~~~-~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L  321 (333)
T 2i1m_A          282 ---------DGY-QMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICSFL  321 (333)
T ss_dssp             ---------HTC-CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             ---------cCC-CCCCCCCCCHHHHHHHHHHhccChhhCcCHHHHHHHH
Confidence                     000 1122333457789999999999999999 99998764

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=100.00  E-value=2.1e-37  Score=258.18  Aligned_cols=223  Identities=17%  Similarity=0.221  Sum_probs=171.8

Q ss_pred             ccccceeeeccc-CCCCCeeeccch------------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||+++.. ++..+++|....            .+|++.+.         .+.|+|++++.+.+...+..++||||
T Consensus        22 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~---------~l~h~~i~~~~~~~~~~~~~~lv~e~   92 (276)
T 2h6d_A           22 GTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLK---------LFRHPHIIKLYQVISTPTDFFMVMEY   92 (276)
T ss_dssp             CSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHH---------TCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             CCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHh---------cCCCCCEeEEEEEEecCCeEEEEEec
Confidence            578899999976 567788886542            23333333         78899999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC--c
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED--F  148 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~--~  148 (257)
                      +++++|.+++..  ...+++.++..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||.+......  .
T Consensus        93 ~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~  167 (276)
T 2h6d_A           93 VSGGELFDYICK--HGRVEEMEARRLFQQILSAVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFL  167 (276)
T ss_dssp             CCSCBHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHHHH---CSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC----
T ss_pred             cCCCcHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChhhEEECCCCCEEEeecccccccCCCcce
Confidence            999999999974  35689999999999999999999999   9999999999999999999999999998765432  2


Q ss_pred             ccccCCCCccCcccccCCCC-CccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCH
Q 044568          149 VIDKRDKGYMAPECYKRTPI-SVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDK  227 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~~~~-~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (257)
                      ....+++.|+|||.+.+..+ +.++|+||||+++|+|++|..||....   ........          ..  .....+.
T Consensus       168 ~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~---~~~~~~~~----------~~--~~~~~~~  232 (276)
T 2h6d_A          168 RTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEH---VPTLFKKI----------RG--GVFYIPE  232 (276)
T ss_dssp             ---------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSS---HHHHHHHH----------HH--CCCCCCT
T ss_pred             ecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCc---HHHHHHHh----------hc--CcccCch
Confidence            34567888999999987765 689999999999999999999997541   11111100          00  0012233


Q ss_pred             HHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          228 KNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       228 ~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .....+.+++.+||+.||.+|| ++|+++
T Consensus       233 ~~~~~l~~li~~~l~~~p~~Rps~~~~l~  261 (276)
T 2h6d_A          233 YLNRSVATLLMHMLQVDPLKRATIKDIRE  261 (276)
T ss_dssp             TSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             hcCHHHHHHHHHHccCChhhCCCHHHHHh
Confidence            4456789999999999999999 999976

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=100.00  E-value=8.4e-38  Score=267.21  Aligned_cols=228  Identities=20%  Similarity=0.279  Sum_probs=177.5

Q ss_pred             ccccceeeecccCCCC---Ceeeccc----------hhhhHHHHhHhhhccccccc-cCCceeeeceeeeecCceeEEEe
Q 044568            4 TKLSNFYRSSFNARNS---PWISRVS----------WTADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVSGKIER   69 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~---~~i~~~~----------~~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~~lV~E   69 (257)
                      +.++.||+++...++.   +++|...          +.+|++.+.         ++ .|+||+++.+.+...+..++|||
T Consensus        36 G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~---------~l~~hp~iv~~~~~~~~~~~~~lv~e  106 (327)
T 1fvr_A           36 GNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLC---------KLGHHPNIINLLGACEHRGYLYLAIE  106 (327)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHT---------TCCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred             CCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHH---------hccCCCchhhhceeeeeCCceEEEEe
Confidence            5789999999766553   2555443          334444444         66 79999999999999999999999


Q ss_pred             ecCCCCHHHHHhccC--------------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEE
Q 044568           70 PVRNGSLTDIIFCSA--------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKI  135 (257)
Q Consensus        70 ~~~~gsL~~~l~~~~--------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl  135 (257)
                      |+++|+|.+++....              ...+++.++..++.|++.||.|||++   +++||||||+||+++.++.+||
T Consensus       107 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~~~kL  183 (327)
T 1fvr_A          107 YAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENYVAKI  183 (327)
T ss_dssp             CCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCEEE
T ss_pred             cCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCccceEEEcCCCeEEE
Confidence            999999999997522              24799999999999999999999999   9999999999999999999999


Q ss_pred             eeecccccCCCC--cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhh
Q 044568          136 LDFGLAKLPNED--FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFI  212 (257)
Q Consensus       136 ~dfg~~~~~~~~--~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~  212 (257)
                      +|||++......  .....+++.|+|||.+.+..++.++||||||+++|||++ |..||.......   ...        
T Consensus       184 ~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~---~~~--------  252 (327)
T 1fvr_A          184 ADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAE---LYE--------  252 (327)
T ss_dssp             CCTTCEESSCEECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH---HHH--------
T ss_pred             cccCcCccccccccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHHH---HHH--------
Confidence            999998743321  233355678999999988888999999999999999998 999997542110   000        


Q ss_pred             hhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          213 NRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                        ...... ....+...+..+.+++.+||+.||.+|| ++|+++.|
T Consensus       253 --~~~~~~-~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L  295 (327)
T 1fvr_A          253 --KLPQGY-RLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSL  295 (327)
T ss_dssp             --HGGGTC-CCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             --HhhcCC-CCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence              000000 1123344567899999999999999999 99998754

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=100.00  E-value=5.4e-38  Score=290.46  Aligned_cols=225  Identities=18%  Similarity=0.255  Sum_probs=175.9

Q ss_pred             ccccceeeecccC---CCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEe
Q 044568            4 TKLSNFYRSSFNA---RNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIER   69 (257)
Q Consensus         4 ~~~~~~y~~~~~~---~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E   69 (257)
                      +.|+.||+|.+..   +..+++|...           +.+|++++.         +++|+||+++.+++. .+..++|||
T Consensus       380 G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~---------~l~hpnIv~l~~~~~-~~~~~lv~E  449 (635)
T 4fl3_A          380 GNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQ---------QLDNPYIVRMIGICE-AESWMLVME  449 (635)
T ss_dssp             CSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHH---------HCCCTTBCCEEEEEE-SSSEEEEEE
T ss_pred             CCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHH---------hCCCCCEeeEEEEEe-cCCEEEEEE
Confidence            5789999996543   3456777543           334444454         788999999999886 456889999


Q ss_pred             ecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-
Q 044568           70 PVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-  148 (257)
Q Consensus        70 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-  148 (257)
                      ||++|+|.+++.  ....+++.++..++.|++.||.|||++   +|+||||||+||+++.++.+||+|||+++...... 
T Consensus       450 ~~~~g~L~~~l~--~~~~l~~~~~~~i~~qi~~~L~yLH~~---~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~  524 (635)
T 4fl3_A          450 MAELGPLNKYLQ--QNRHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADEN  524 (635)
T ss_dssp             CCTTEEHHHHHH--HCTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC---
T ss_pred             ccCCCCHHHHHh--hCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeCCCCChHhEEEeCCCCEEEEEcCCccccccCcc
Confidence            999999999997  456799999999999999999999999   99999999999999999999999999987543321 


Q ss_pred             -----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcC
Q 044568          149 -----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRG  222 (257)
Q Consensus       149 -----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (257)
                           ....++..|+|||++.+..++.++||||||+++|||++ |+.||.......    ....         +.. ...
T Consensus       525 ~~~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~----~~~~---------i~~-~~~  590 (635)
T 4fl3_A          525 YYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE----VTAM---------LEK-GER  590 (635)
T ss_dssp             ----------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH----HHHH---------HHT-TCC
T ss_pred             ccccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHH----HHHH---------HHc-CCC
Confidence                 22344567999999998899999999999999999998 999997542111    0000         000 011


Q ss_pred             CCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          223 TKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       223 ~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ...+..++..+.+++..||+.||++|| ++++++.|
T Consensus       591 ~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L  626 (635)
T 4fl3_A          591 MGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRL  626 (635)
T ss_dssp             CCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHH
Confidence            134455678899999999999999999 99998764

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=100.00  E-value=3.2e-37  Score=269.51  Aligned_cols=248  Identities=18%  Similarity=0.137  Sum_probs=183.8

Q ss_pred             ccccceeeeccc-CCCCCeeeccc--------hhhhHHHHhHhhhccccccccCCceeeeceeee----ecCceeEEEee
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS--------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAK----LTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~----~~~~~~lV~E~   70 (257)
                      +.++.||++... ++..+++|...        +.+|++.+...... ......|+|++++.+.+.    .....++||||
T Consensus        48 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~-~~~~~~~~~iv~~~~~~~~~~~~~~~~~lv~e~  126 (397)
T 1wak_A           48 GHFSTVWLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVRNS-DPNDPNREMVVQLLDDFKISGVNGTHICMVFEV  126 (397)
T ss_dssp             CSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHS-CTTCGGGGGBCCEEEEEEEEETTEEEEEEEECC
T ss_pred             cCCeeEEEEEecCCCeEEEEEEEecCCcchHHHHHHHHHHHHHhhc-CCCCCCcceeeeeecceeecCCCCceEEEEEec
Confidence            568999999854 45567788654        23555555522111 111234888999999887    55688999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCC-------------------
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW-------------------  131 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~-------------------  131 (257)
                      + +++|.+.+.......+++.++..++.|++.||.|||+++  +|+||||||+|||++.++                   
T Consensus       127 ~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~--givHrDikp~NIll~~~~~~~~~~~~~~~~~~~~~~~  203 (397)
T 1wak_A          127 L-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKC--RIIHTDIKPENILLSVNEQYIRRLAAEATEWQRSGAP  203 (397)
T ss_dssp             C-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTT--CEECCCCSGGGEEECCCHHHHHHHHHHHC--------
T ss_pred             c-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhC--CEecCCCCHHHeeEeccchhhhhhhhhhHHHhhcCCC
Confidence            9 567777776545577999999999999999999999963  899999999999998765                   


Q ss_pred             ------------------------------ceEEeeecccccCCCCcccccCCCCccCcccccCCCCCccccchhHHHHH
Q 044568          132 ------------------------------TAKILDFGLAKLPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVL  181 (257)
Q Consensus       132 ------------------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l  181 (257)
                                                    .+||+|||.+...........+|+.|+|||.+.+..++.++|||||||++
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il  283 (397)
T 1wak_A          204 PPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMA  283 (397)
T ss_dssp             -------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBCSCSCCSCGGGCCHHHHHTSCCCTHHHHHHHHHHH
T ss_pred             CCCCCccccCCcccccccccccccccccccceEeccccccccccccCccCCCCCcccCChhhcCCCCCcHHHHHHHHHHH
Confidence                                          79999999998766666667889999999999998999999999999999


Q ss_pred             HHHHhcCCCCCcCCCChh---hHHHHHHHHHhhh-------hhh-----------------------hhhhhcCCCCCHH
Q 044568          182 LETICCRKNMEIDASKPE---EIILTNWVYKCFI-------NRE-----------------------LNKLVRGTKVDKK  228 (257)
Q Consensus       182 ~el~~g~~pf~~~~~~~~---~~~~~~~~~~~~~-------~~~-----------------------~~~~~~~~~~~~~  228 (257)
                      |||++|+.||........   ...+.........       ...                       ...+......+..
T Consensus       284 ~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (397)
T 1wak_A          284 FELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEVLVEKYEWSQE  363 (397)
T ss_dssp             HHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCCCCCHHHHHHHTSCCCHH
T ss_pred             HHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccccCCcchhHhhhhhcccchh
Confidence            999999999976533321   1111111000000       000                       0011111234667


Q ss_pred             HHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          229 NLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       229 ~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ....+.+|+.+||+.||++|| ++|+++
T Consensus       364 ~~~~~~~li~~~L~~dP~~Rpt~~e~l~  391 (397)
T 1wak_A          364 EAAGFTDFLLPMLELIPEKRATAAECLR  391 (397)
T ss_dssp             HHHHHHHHHGGGGCSSGGGSCCHHHHHT
T ss_pred             hHHHHHHHHHHHhccChhhcCCHHHHhh
Confidence            788999999999999999999 999986

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=100.00  E-value=3.5e-37  Score=261.26  Aligned_cols=231  Identities=16%  Similarity=0.209  Sum_probs=171.3

Q ss_pred             ccccceeeecc-cCCCCCeeeccc------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSF-NARNSPWISRVS------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~-~~~~~~~i~~~~------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||++.. .++..+++|...            +.+|++.+.         ++.|+|++++.+.+...+..++||||
T Consensus        43 G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~i~~~~~~~~~~~~~~lv~e~  113 (310)
T 2wqm_A           43 GQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLK---------QLNHPNVIKYYASFIEDNELNIVLEL  113 (310)
T ss_dssp             C--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHH---------TCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             CCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHH---------hCCCCCEeeEEEEEEcCCcEEEEEec
Confidence            56889999986 456677888654            223444444         78899999999999999999999999


Q ss_pred             cCCCCHHHHHhcc--CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC-
Q 044568           71 VRNGSLTDIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED-  147 (257)
Q Consensus        71 ~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~-  147 (257)
                      +++|+|.+++...  ....+++.++..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||++...... 
T Consensus       114 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~~~~  190 (310)
T 2wqm_A          114 ADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKT  190 (310)
T ss_dssp             CCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCC----------
T ss_pred             CCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCcHHHEEEcCCCCEEEEeccceeeecCCC
Confidence            9999999999642  356789999999999999999999999   9999999999999999999999999998754332 


Q ss_pred             --cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCC
Q 044568          148 --FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKV  225 (257)
Q Consensus       148 --~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (257)
                        .....++..|+|||.+.+..++.++||||||+++|+|++|..||.........  ...         .......+...
T Consensus       191 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~--~~~---------~~~~~~~~~~~  259 (310)
T 2wqm_A          191 TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYS--LCK---------KIEQCDYPPLP  259 (310)
T ss_dssp             --------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCHHH--HHH---------HHHTTCSCCCC
T ss_pred             ccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchhHHH--HHH---------HhhcccCCCCc
Confidence              23446788899999999888999999999999999999999999754222111  000         00000001111


Q ss_pred             CHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          226 DKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       226 ~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ....++.+.+++.+||+.||.+|| ++|+++.|
T Consensus       260 ~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~l  292 (310)
T 2wqm_A          260 SDHYSEELRQLVNMCINPDPEKRPDVTYVYDVA  292 (310)
T ss_dssp             TTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHcCCChhhCCCHHHHHHHH
Confidence            234456799999999999999999 99998764

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=100.00  E-value=1.4e-37  Score=272.37  Aligned_cols=221  Identities=18%  Similarity=0.217  Sum_probs=173.1

Q ss_pred             ccccceeeecccCCCCCeeeccc-----------hhhhHHHHhHhhhcccccccc--CCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIR--GGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~--h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||++...++..+++|.+.           +.+|++.+.         ++.  |+||+++.+++...+..+|||| 
T Consensus        67 G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~---------~l~~~~~~iv~~~~~~~~~~~~~lv~E-  136 (390)
T 2zmd_A           67 GGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLN---------KLQQHSDKIIRLYDYEITDQYIYMVME-  136 (390)
T ss_dssp             CSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHH---------HHTTTCTTBCCEEEEEECSSEEEEEEE-
T ss_pred             CCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHH---------HcccCCCeEEEEEEEEecCCEEEEEEe-
Confidence            57899999998888888988653           234444444         444  5999999999999999999999 


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc--
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF--  148 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~--  148 (257)
                      +.+++|.+++..  ...+++.++..++.|++.||.|||++   +|+||||||+||+++ ++.+||+|||++.......  
T Consensus       137 ~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~aL~~lH~~---~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~~~  210 (390)
T 2zmd_A          137 CGNIDLNSWLKK--KKSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTS  210 (390)
T ss_dssp             CCSEEHHHHHHH--CSSCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCCGGGEEES-SSCEEECCCSSSCCC------
T ss_pred             cCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHEEEE-CCeEEEEecCccccccCCCcc
Confidence            567899999984  45789999999999999999999999   999999999999996 4789999999987643322  


Q ss_pred             ---ccccCCCCccCcccccC-----------CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhh
Q 044568          149 ---VIDKRDKGYMAPECYKR-----------TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINR  214 (257)
Q Consensus       149 ---~~~~~~~~~~aPE~~~~-----------~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~  214 (257)
                         ....+|+.|+|||++.+           ..++.++|||||||++|||++|+.||........  .            
T Consensus       211 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~--~------------  276 (390)
T 2zmd_A          211 VVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQIS--K------------  276 (390)
T ss_dssp             ---CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHH--H------------
T ss_pred             ccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHHHH--H------------
Confidence               34568999999999865           3688999999999999999999999975421110  0            


Q ss_pred             hhhhhhcC---CCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          215 ELNKLVRG---TKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       215 ~~~~~~~~---~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                       +...+++   ...+......+.+++.+||+.||.+|| +.|+++
T Consensus       277 -~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~  320 (390)
T 2zmd_A          277 -LHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLA  320 (390)
T ss_dssp             -HHHHHCTTSCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             -HHHHhCccccCCCCccchHHHHHHHHHHcccChhhCCCHHHHhh
Confidence             1111111   122333356789999999999999999 999975

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=100.00  E-value=1.5e-37  Score=259.96  Aligned_cols=228  Identities=15%  Similarity=0.141  Sum_probs=174.1

Q ss_pred             ccccceeeeccc-CCCCCeeeccch-----hhhHHHHhHhhhccccccc-cCCceeeeceeeeecCceeEEEeecCCCCH
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW-----TADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVSGKIERPVRNGSL   76 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~-----~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL   76 (257)
                      +.++.||++... ++..+++|....     ..+.+.+.  ... .+.++ .|+||+++.+.+...+..++||||+++|+|
T Consensus        22 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~--e~~-~~~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L   98 (289)
T 1x8b_A           22 GEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALR--EVY-AHAVLGQHSHVVRYFSAWAEDDHMLIQNEYCNGGSL   98 (289)
T ss_dssp             ETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHH--HHH-HHHHSCSCTTBCCEEEEEEETTEEEEEEECCTTCBH
T ss_pred             CCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHH--HHH-HHHHhCCCCCeeeeeeeeecCCeEEEEEEecCCCcH
Confidence            568899999976 667778876542     11111111  000 12244 799999999999999999999999999999


Q ss_pred             HHHHhccC--CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCC-------------------CCceEE
Q 044568           77 TDIIFCSA--ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE-------------------FWTAKI  135 (257)
Q Consensus        77 ~~~l~~~~--~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~-------------------~~~~kl  135 (257)
                      .+++....  ...+++.++..++.|++.||.|||++   +++|+||||+||+++.                   ...++|
T Consensus        99 ~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~~~~~~kl  175 (289)
T 1x8b_A           99 ADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSM---SLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKI  175 (289)
T ss_dssp             HHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEC--------------------CCCEEE
T ss_pred             HHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeecCCCHHHEEEcCCCCCcccccccccccccCCceEEEE
Confidence            99997431  26789999999999999999999999   9999999999999984                   447999


Q ss_pred             eeecccccCCCCcccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhh
Q 044568          136 LDFGLAKLPNEDFVIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINR  214 (257)
Q Consensus       136 ~dfg~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~  214 (257)
                      +|||.+...... ....+|+.|+|||.+.+. .++.++||||||+++|++++|..|+...   .   .....     .. 
T Consensus       176 ~Dfg~~~~~~~~-~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~---~---~~~~~-----~~-  242 (289)
T 1x8b_A          176 GDLGHVTRISSP-QVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNG---D---QWHEI-----RQ-  242 (289)
T ss_dssp             CCCTTCEETTCS-CCCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSS---H---HHHHH-----HT-
T ss_pred             cccccccccCCc-cccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcch---h---HHHHH-----Hc-
Confidence            999998765443 334688899999999876 5678999999999999999998877533   1   00000     00 


Q ss_pred             hhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          215 ELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                         ...  ...+...+..+.+++.+||+.||++|| +.|+++
T Consensus       243 ---~~~--~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~  279 (289)
T 1x8b_A          243 ---GRL--PRIPQVLSQEFTELLKVMIHPDPERRPSAMALVK  279 (289)
T ss_dssp             ---TCC--CCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             ---CCC--CCCCcccCHHHHHHHHHHhCCCcccCCCHHHHhh
Confidence               000  123344567899999999999999999 999986

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=100.00  E-value=1.2e-37  Score=270.29  Aligned_cols=225  Identities=12%  Similarity=0.094  Sum_probs=175.4

Q ss_pred             ccccceeee------cccCCCCCeeeccch------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            4 TKLSNFYRS------SFNARNSPWISRVSW------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~------~~~~~~~~~i~~~~~------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      +.++.||++      ....+..+++|...-      ..+.+.+.      .+....|+|++.+.+.+...+..+|||||+
T Consensus        76 G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~e~~~~~------~l~~~~~~~iv~~~~~~~~~~~~~lv~e~~  149 (365)
T 3e7e_A           76 GAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQLME------RLKPSMQHMFMKFYSAHLFQNGSVLVGELY  149 (365)
T ss_dssp             CSSEEEEEEEC-------CCCCEEEEEESSCCHHHHHHHHHHHH------HSCGGGGGGBCCEEEEEECSSCEEEEECCC
T ss_pred             cCCEEEEEEEecCCcccccCcEEEEEEeCCCChhHHHHHHHHHH------HhhhhhhhhhhhhheeeecCCCcEEEEecc
Confidence            578999999      466777888887653      33344433      233556999999999999999999999999


Q ss_pred             CCCCHHHHHhcc---CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCC-----------CCceEEee
Q 044568           72 RNGSLTDIIFCS---AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE-----------FWTAKILD  137 (257)
Q Consensus        72 ~~gsL~~~l~~~---~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~-----------~~~~kl~d  137 (257)
                      ++|+|.+++...   ....+++.++..++.|++.||.|||++   +|+||||||+|||++.           ++.+||+|
T Consensus       150 ~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~---~ivHrDiKp~NIll~~~~~~~~~~~~~~~~~kl~D  226 (365)
T 3e7e_A          150 SYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDC---EIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALID  226 (365)
T ss_dssp             CSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECGGGTCC------CTTEEECC
T ss_pred             CCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhC---CeecCCCCHHHEEecccccCccccccccCCEEEee
Confidence            999999999642   356799999999999999999999999   9999999999999988           89999999


Q ss_pred             ecccccCC-----CCcccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhh
Q 044568          138 FGLAKLPN-----EDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFI  212 (257)
Q Consensus       138 fg~~~~~~-----~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~  212 (257)
                      ||+++...     .......||+.|+|||++.+..++.++||||||+++|||++|+.||........             
T Consensus       227 FG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~-------------  293 (365)
T 3e7e_A          227 LGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGEC-------------  293 (365)
T ss_dssp             CTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTEE-------------
T ss_pred             CchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCCce-------------
Confidence            99986321     222455789999999999998999999999999999999999999964421110             


Q ss_pred             hhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC--hHHHHHh
Q 044568          213 NRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP--MKCAVMM  256 (257)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP--~~ei~~~  256 (257)
                        .....+...    ...+.+.+++..|++.+|.+||  ++++.+.
T Consensus       294 --~~~~~~~~~----~~~~~~~~~~~~~l~~~p~~r~~~~~~l~~~  333 (365)
T 3e7e_A          294 --KPEGLFRRL----PHLDMWNEFFHVMLNIPDCHHLPSLDLLRQK  333 (365)
T ss_dssp             --EECSCCTTC----SSHHHHHHHHHHHHCCCCTTCCCCHHHHHHH
T ss_pred             --eechhcccc----CcHHHHHHHHHHHcCCCCCCcchHHHHHHHH
Confidence              001111111    1245677888899999999997  7766543

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=100.00  E-value=1e-37  Score=273.78  Aligned_cols=240  Identities=16%  Similarity=0.144  Sum_probs=182.3

Q ss_pred             ccccceeeecccC-CCCCeeeccch----------hhhHHHHhHhhhccccccccCCceeeeceeeeecC--ceeEEEee
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTS--VSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~--~~~lV~E~   70 (257)
                      +.++.||++.... +..+++|...-          .+|++.+.         ++.|+||+++.+.+...+  ..++||||
T Consensus        20 G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~---------~l~hpnIv~~~~~~~~~~~~~~~lv~e~   90 (396)
T 4eut_A           20 GATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLK---------KLNHKNIVKLFAIEEETTTRHKVLIMEF   90 (396)
T ss_dssp             CSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHH---------HCCCTTBCCEEEEEECTTTCCEEEEECC
T ss_pred             CCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHH---------hcCCCCCCeEEEeeccCCCCeeEEEEec
Confidence            5789999999765 66678886542          24444444         788999999999988765  67999999


Q ss_pred             cCCCCHHHHHhccC-CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceee----CCCCceEEeeecccccCC
Q 044568           71 VRNGSLTDIIFCSA-ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM----DEFWTAKILDFGLAKLPN  145 (257)
Q Consensus        71 ~~~gsL~~~l~~~~-~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~----~~~~~~kl~dfg~~~~~~  145 (257)
                      +++|+|.+++.... ...+++.++..++.|++.||.|||++   +|+||||||+||++    +.++.+||+|||++....
T Consensus        91 ~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~~  167 (396)
T 4eut_A           91 CPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELE  167 (396)
T ss_dssp             CTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEECTTSCEEEEECCGGGCEECC
T ss_pred             CCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCcCHHHEEEeecCCCceeEEEecCCCceEcc
Confidence            99999999997532 23499999999999999999999999   99999999999999    777789999999997654


Q ss_pred             CCc--ccccCCCCccCcccccC--------CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhH-HHHHHHHHhhhhh
Q 044568          146 EDF--VIDKRDKGYMAPECYKR--------TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEI-ILTNWVYKCFINR  214 (257)
Q Consensus       146 ~~~--~~~~~~~~~~aPE~~~~--------~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~-~~~~~~~~~~~~~  214 (257)
                      ...  ....+|+.|+|||.+..        ..++.++||||||+++|||++|+.||.......... ......... ...
T Consensus       168 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~-p~~  246 (396)
T 4eut_A          168 DDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGK-PSG  246 (396)
T ss_dssp             CGGGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHHHSC-CTT
T ss_pred             CCCccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHhcCC-Ccc
Confidence            332  34568899999999864        456789999999999999999999997543322211 111111100 000


Q ss_pred             hh-------------h-hhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHh
Q 044568          215 EL-------------N-KLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMM  256 (257)
Q Consensus       215 ~~-------------~-~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~  256 (257)
                      .+             . ..-.....+......+.+++.+||+.||++|| +.|+++.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~  303 (396)
T 4eut_A          247 AISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAE  303 (396)
T ss_dssp             CCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHH
T ss_pred             cchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHH
Confidence            00             0 01111145577889999999999999999999 9999765

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=100.00  E-value=2.6e-37  Score=261.55  Aligned_cols=226  Identities=19%  Similarity=0.236  Sum_probs=180.6

Q ss_pred             ccccceeeeccc-CCCCCeeeccc---------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCC
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS---------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRN   73 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~   73 (257)
                      +.++.||+++.. +++.+++|...         +.+|++.+.         ++.|+|++++.+.+...+..++||||+++
T Consensus        20 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~---------~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   90 (304)
T 2jam_A           20 GAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLK---------KIKHENIVTLEDIYESTTHYYLVMQLVSG   90 (304)
T ss_dssp             CSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHH---------HCCCTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred             CCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHH---------hCCCCCeeehhhhcccCCEEEEEEEcCCC
Confidence            568899999865 56667777654         345555555         78899999999999999999999999999


Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceee---CCCCceEEeeecccccCCCC-cc
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKILDFGLAKLPNED-FV  149 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~---~~~~~~kl~dfg~~~~~~~~-~~  149 (257)
                      ++|.+++..  ...+++.++..++.|++.||.|||++   +++|+||+|+||++   +.++.++|+|||.+...... ..
T Consensus        91 ~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~  165 (304)
T 2jam_A           91 GELFDRILE--RGVYTEKDASLVIQQVLSAVKYLHEN---GIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGIMS  165 (304)
T ss_dssp             CBHHHHHHH--HSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCCBTTH
T ss_pred             ccHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEecCCCCCCEEEccCCcceecCCCccc
Confidence            999999973  45689999999999999999999999   99999999999999   77889999999998754332 24


Q ss_pred             cccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc-CCCCCHH
Q 044568          150 IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR-GTKVDKK  228 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  228 (257)
                      ...+++.|+|||.+.+..++.++||||+|+++|||++|..||.....   .........         .... +......
T Consensus       166 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~---~~~~~~i~~---------~~~~~~~~~~~~  233 (304)
T 2jam_A          166 TACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETE---SKLFEKIKE---------GYYEFESPFWDD  233 (304)
T ss_dssp             HHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCH---HHHHHHHHH---------CCCCCCTTTTTT
T ss_pred             cccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH---HHHHHHHHc---------CCCCCCcccccc
Confidence            45688999999999998999999999999999999999999975421   111111100         0000 1122234


Q ss_pred             HHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          229 NLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       229 ~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .+..+.+++.+||+.||++|| +.|+++
T Consensus       234 ~~~~~~~li~~~l~~dp~~Rps~~~~l~  261 (304)
T 2jam_A          234 ISESAKDFICHLLEKDPNERYTCEKALS  261 (304)
T ss_dssp             SCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred             CCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            557899999999999999999 999975

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=100.00  E-value=1.8e-37  Score=266.96  Aligned_cols=237  Identities=18%  Similarity=0.161  Sum_probs=181.6

Q ss_pred             ccccceeeecccCCCCCeeeccc--------------------------hhhhHHHHhHhhhccccccccCCceeeecee
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS--------------------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVR   57 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~   57 (257)
                      +.++.||+++. ++..+++|...                          +.+|++.+.         ++.|+|++++.+.
T Consensus        42 G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~i~~~~~~  111 (348)
T 2pml_X           42 GKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIIT---------DIKNEYCLTCEGI  111 (348)
T ss_dssp             CSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHT---------TCCCTTBCCCSEE
T ss_pred             CCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHH---------hCCCCCcceEEEE
Confidence            57899999999 88888888644                          234444444         7889999999999


Q ss_pred             eeecCceeEEEeecCCCCHHHH------HhccCCCCCCHHHHHHHHHHHHHHHHHHhh-CCCCCeeeccCCCCceeeCCC
Q 044568           58 AKLTSVSGKIERPVRNGSLTDI------IFCSAERNPYWNQRVRIALDVAKGILYLHD-ECEPPILHCDIKPQNILMDEF  130 (257)
Q Consensus        58 ~~~~~~~~lV~E~~~~gsL~~~------l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~dl~~~nil~~~~  130 (257)
                      +...+..++||||+++|+|.++      +.......+++..+..++.|++.||.|||+ +   +++|+||+|+||+++.+
T Consensus       112 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---~i~H~dl~p~Nil~~~~  188 (348)
T 2pml_X          112 ITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEK---NICHRDVKPSNILMDKN  188 (348)
T ss_dssp             EESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTS---CEECCCCCGGGEEECTT
T ss_pred             EeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhccC---CEeecCCChHhEEEcCC
Confidence            9999999999999999999999      654336789999999999999999999999 8   99999999999999999


Q ss_pred             CceEEeeecccccCCC-CcccccCCCCccCcccccCC-CCCc-cccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHH
Q 044568          131 WTAKILDFGLAKLPNE-DFVIDKRDKGYMAPECYKRT-PISV-KADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWV  207 (257)
Q Consensus       131 ~~~kl~dfg~~~~~~~-~~~~~~~~~~~~aPE~~~~~-~~~~-~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~  207 (257)
                      +.++|+|||.+..... ......++..|+|||.+.+. .++. ++||||||+++|||++|..||.........  .....
T Consensus       189 ~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~--~~~i~  266 (348)
T 2pml_X          189 GRVKLSDFGESEYMVDKKIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLVEL--FNNIR  266 (348)
T ss_dssp             SCEEECCCTTCEECBTTEECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCSHHH--HHHHT
T ss_pred             CcEEEeccccccccccccccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcHHHH--HHHHh
Confidence            9999999999875432 33455778889999999877 5665 999999999999999999999865332111  11000


Q ss_pred             HHhhhhhh-----hhhhhcC--CCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          208 YKCFINRE-----LNKLVRG--TKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       208 ~~~~~~~~-----~~~~~~~--~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ......+.     .......  .......+..+.+++.+||+.||.+|| ++|+++
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~  322 (348)
T 2pml_X          267 TKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALK  322 (348)
T ss_dssp             SCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             ccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            00000000     0000000  001134557899999999999999999 999986

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.3e-37  Score=266.00  Aligned_cols=235  Identities=16%  Similarity=0.151  Sum_probs=175.5

Q ss_pred             ccccceeeeccc-CCCCCeeeccch----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +.++.||+++.. ++..+++|....          .+|++.+.         ++.|+||+++.+.+...+..++||||++
T Consensus        13 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~~~~~~~lv~e~~~   83 (324)
T 3mtl_A           13 GTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLK---------DLKHANIVTLHDIIHTEKSLTLVFEYLD   83 (324)
T ss_dssp             CSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHS---------CCCCTTBCCEEEEEECSSCEEEEEECCS
T ss_pred             CCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHH---------hcCCCCCCeeeeEEeeCCEEEEEecccc
Confidence            678999999976 566677886542          34555555         7889999999999999999999999997


Q ss_pred             CCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---cc
Q 044568           73 NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---FV  149 (257)
Q Consensus        73 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~~  149 (257)
                       |+|.+++.. ....+++.++..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++......   ..
T Consensus        84 -~~l~~~~~~-~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~  158 (324)
T 3mtl_A           84 -KDLKQYLDD-CGNIINMHNVKLFLFQLLRGLAYCHRQ---KVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYD  158 (324)
T ss_dssp             -EEHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCCGGGEEECTTCCEEECSSSEEECC--------
T ss_pred             -cCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCcCHHHEEECCCCCEEEccCcccccccCCccccc
Confidence             599999976 556799999999999999999999999   9999999999999999999999999998754322   23


Q ss_pred             cccCCCCccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhh-----------hhhhhh
Q 044568          150 IDKRDKGYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCF-----------INRELN  217 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~-----------~~~~~~  217 (257)
                      ...+|+.|+|||.+.+ ..++.++||||+|+++|||++|+.||.......   ..........           ......
T Consensus       159 ~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~  235 (324)
T 3mtl_A          159 NEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEE---QLHFIFRILGTPTEETWPGILSNEEFK  235 (324)
T ss_dssp             ----CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH---HHHHHHHHHCCCCTTTSTTGGGCHHHH
T ss_pred             cccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH---HHHHHHHHhCCCChHhchhhhcchhhc
Confidence            4467888999999876 568999999999999999999999997652211   1111111000           000000


Q ss_pred             hhhcCC-------CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          218 KLVRGT-------KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       218 ~~~~~~-------~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ....+.       .........+.+++.+||+.||.+|| ++|+++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  281 (324)
T 3mtl_A          236 TYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMK  281 (324)
T ss_dssp             HTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             ccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhc
Confidence            000000       01112346788999999999999999 999975

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=100.00  E-value=5.2e-37  Score=271.99  Aligned_cols=184  Identities=16%  Similarity=0.182  Sum_probs=156.0

Q ss_pred             ccccceeeecccC-CCCCeeeccc--------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCC
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS--------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNG   74 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~g   74 (257)
                      +.++.||++.... +..+++|...        +.+|++.+....   ......|+|++.+.+.+...+..++||||+. +
T Consensus       108 G~fg~V~~a~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~---~~~~~~~~~iv~~~~~~~~~~~~~lv~e~~~-~  183 (429)
T 3kvw_A          108 GSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLR---KQDKDNTMNVIHMLENFTFRNHICMTFELLS-M  183 (429)
T ss_dssp             SSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHH---TTCTTSCSCBCCEEEEEEETTEEEEEECCCC-C
T ss_pred             CccEEEEEEEECCCCcEEEEEEECCccchHHHHHHHHHHHHHHh---hccccCCcCEEEEEeecccCCeEEEEEeccC-C
Confidence            5789999997654 5667888654        234444444211   1224478899999999999999999999996 6


Q ss_pred             CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCc--eEEeeecccccCCCCccccc
Q 044568           75 SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT--AKILDFGLAKLPNEDFVIDK  152 (257)
Q Consensus        75 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~--~kl~dfg~~~~~~~~~~~~~  152 (257)
                      +|.+++.......+++..+..++.|++.||.|||++   +|+||||||+|||++.++.  +||+|||++...........
T Consensus       184 ~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~~~~~~~~~~~  260 (429)
T 3kvw_A          184 NLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKN---RIIHCDLKPENILLKQQGRSGIKVIDFGSSCYEHQRVYTYI  260 (429)
T ss_dssp             BHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHH---TEECSCCSGGGEEESSTTSCCEEECCCTTCEETTCCCCSSC
T ss_pred             CHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEccCCCcceEEeecccceecCCcccccC
Confidence            999999875556799999999999999999999999   9999999999999998877  99999999987666666778


Q ss_pred             CCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcC
Q 044568          153 RDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEID  194 (257)
Q Consensus       153 ~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~  194 (257)
                      +|+.|+|||.+.+..++.++|||||||++|||++|..||...
T Consensus       261 gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~  302 (429)
T 3kvw_A          261 QSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGE  302 (429)
T ss_dssp             SCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCC
Confidence            899999999999999999999999999999999999999765

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=100.00  E-value=5.9e-38  Score=267.27  Aligned_cols=228  Identities=18%  Similarity=0.231  Sum_probs=178.2

Q ss_pred             ccccceeeeccc------CCCCCeeeccch----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEE
Q 044568            4 TKLSNFYRSSFN------ARNSPWISRVSW----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~~------~~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV   67 (257)
                      +.++.||+++..      .+..+++|....          .+|++.+.         ++.|+|++++.+.+...+..++|
T Consensus        36 G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~i~~~~~~~~~~~~~~lv  106 (322)
T 1p4o_A           36 GSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMK---------EFNCHHVVRLLGVVSQGQPTLVI  106 (322)
T ss_dssp             CSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGG---------GCCCTTBCCEEEEECSSSSCEEE
T ss_pred             CCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHH---------hcCCCCEeeeEEEEccCCccEEE
Confidence            568899998765      355677776542          23333333         78899999999999999999999


Q ss_pred             EeecCCCCHHHHHhccC--------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeec
Q 044568           68 ERPVRNGSLTDIIFCSA--------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFG  139 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~--------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg  139 (257)
                      |||+++|+|.+++....        ...+++..+..++.|++.||.|||++   +++||||||+||+++.++.+||+|||
T Consensus       107 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~NIli~~~~~~kl~Dfg  183 (322)
T 1p4o_A          107 MELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFG  183 (322)
T ss_dssp             EECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCSGGGEEECTTCCEEECCTT
T ss_pred             EEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CCccCCCccceEEEcCCCeEEECcCc
Confidence            99999999999997421        24678999999999999999999999   99999999999999999999999999


Q ss_pred             ccccCCCCc-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhh
Q 044568          140 LAKLPNEDF-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFIN  213 (257)
Q Consensus       140 ~~~~~~~~~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~  213 (257)
                      ++.......     ....+++.|+|||.+.+..++.++||||||+++|||++ |..||.....   .......     ..
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~---~~~~~~~-----~~  255 (322)
T 1p4o_A          184 MTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSN---EQVLRFV-----ME  255 (322)
T ss_dssp             CCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCH---HHHHHHH-----HT
T ss_pred             cccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCH---HHHHHHH-----Hc
Confidence            987433221     22344677999999998889999999999999999999 8999975411   1100000     00


Q ss_pred             hhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          214 RELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      .      .....+...+..+.+++.+||+.||.+|| +.|+++.|
T Consensus       256 ~------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L  294 (322)
T 1p4o_A          256 G------GLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSI  294 (322)
T ss_dssp             T------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             C------CcCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHH
Confidence            0      00123345567799999999999999999 99998764

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=3.1e-37  Score=262.91  Aligned_cols=235  Identities=18%  Similarity=0.180  Sum_probs=175.8

Q ss_pred             ccccceeeecccC-CCCCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +.++.||++.... +..+++|...          +.+|++.+.         ++.|+||+++.+.+...+..++||||++
T Consensus        16 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~---------~l~hp~iv~~~~~~~~~~~~~lv~e~~~   86 (317)
T 2pmi_A           16 GTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMK---------ELKHENIVRLYDVIHTENKLTLVFEFMD   86 (317)
T ss_dssp             ---CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHT---------TCCBTTBCCEEEEECCTTEEEEEEECCC
T ss_pred             CCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHH---------hcCCCCcceEEEEEEECCeEEEEEEecC
Confidence            5789999998654 5567777653          234444444         7889999999999999999999999998


Q ss_pred             CCCHHHHHhcc----CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC--
Q 044568           73 NGSLTDIIFCS----AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE--  146 (257)
Q Consensus        73 ~gsL~~~l~~~----~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~--  146 (257)
                       |+|.+++...    ....+++..+..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++.....  
T Consensus        87 -~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~  162 (317)
T 2pmi_A           87 -NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHEN---KILHRDLKPQNLLINKRGQLKLGDFGLARAFGIPV  162 (317)
T ss_dssp             -CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCSSCEETTSCC
T ss_pred             -CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCChHHeEEcCCCCEEECcCccceecCCCc
Confidence             6999998642    235689999999999999999999999   999999999999999999999999999875432  


Q ss_pred             -CcccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhh-----hhhhh-
Q 044568          147 -DFVIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFIN-----RELNK-  218 (257)
Q Consensus       147 -~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-  218 (257)
                       ......+|+.|+|||.+.+. .++.++||||||+++|||++|+.||......   .............     +.... 
T Consensus       163 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~  239 (317)
T 2pmi_A          163 NTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDE---EQLKLIFDIMGTPNESLWPSVTKL  239 (317)
T ss_dssp             CCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH---HHHHHHHHHHCSCCTTTCGGGGGC
T ss_pred             ccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChH---HHHHHHHHHhCCCChhHhhhhhhh
Confidence             22445778999999999764 5899999999999999999999999755221   1111111100000     00000 


Q ss_pred             -----------------hhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          219 -----------------LVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       219 -----------------~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                                       .+.+ .........+.+++.+||+.||++|| ++|+++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~  293 (317)
T 2pmi_A          240 PKYNPNIQQRPPRDLRQVLQP-HTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALH  293 (317)
T ss_dssp             TTCCTTCCCCCCCCSHHHHGG-GCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             hhcccccccccchhHHHhhcc-cccccCCHHHHHHHHHHCCCCcccCCCHHHHhC
Confidence                             0000 00112346789999999999999999 999975

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=100.00  E-value=7.8e-37  Score=274.19  Aligned_cols=233  Identities=16%  Similarity=0.136  Sum_probs=179.3

Q ss_pred             ccccceeeecc-cCCCCCeeeccc-------hhhhHHHHhHhhhccccccccC-CceeeeceeeeecCceeEEEeecCCC
Q 044568            4 TKLSNFYRSSF-NARNSPWISRVS-------WTADIEVLSVAMRGSKCTRIRG-GLLLNVPVRAKLTSVSGKIERPVRNG   74 (257)
Q Consensus         4 ~~~~~~y~~~~-~~~~~~~i~~~~-------~~~~~~~~~~~~~~~~~~~~~h-~~i~~~~~~~~~~~~~~lV~E~~~~g   74 (257)
                      +.++.||+++. .++..+++|...       +.+|++.+.         .+.| .++..+..++...+..+|||||+ ++
T Consensus        18 G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~E~~il~---------~L~~~~~i~~i~~~~~~~~~~~lvme~~-g~   87 (483)
T 3sv0_A           18 GSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKIYR---------ILQGGTGIPNVRWFGVEGDYNVLVMDLL-GP   87 (483)
T ss_dssp             CSSCEEEEEEETTTCCEEEEEEEETTCSSCCHHHHHHHHH---------HTTTSTTCCCEEEEEEETTEEEEEEECC-CC
T ss_pred             CCCEEEEEEEECCCCcEEEEEEeccccccHHHHHHHHHHH---------HhcCCCCCCeEEEEEeeCCEEEEEEECC-CC
Confidence            57899999995 556677887533       455666655         4445 44445566667788889999999 89


Q ss_pred             CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceee---CCCCceEEeeecccccCCCCc---
Q 044568           75 SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKILDFGLAKLPNEDF---  148 (257)
Q Consensus        75 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~---~~~~~~kl~dfg~~~~~~~~~---  148 (257)
                      +|.+++.. ....+++.+++.++.||+.||.|||++   +|+||||||+|||+   +.++.+||+|||+++......   
T Consensus        88 sL~~ll~~-~~~~l~~~~~~~i~~qi~~aL~yLH~~---gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~~~~~  163 (483)
T 3sv0_A           88 SLEDLFNF-CSRKLSLKTVLMLADQMINRVEFVHSK---SFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQ  163 (483)
T ss_dssp             BHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCC
T ss_pred             CHHHHHHh-hcCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccCcceEEEecCCCCCeEEEEeCCcceeccCCcccc
Confidence            99999975 466799999999999999999999999   99999999999999   578899999999987543322   


Q ss_pred             -------ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc
Q 044568          149 -------VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR  221 (257)
Q Consensus       149 -------~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (257)
                             ....+|..|+|||.+.+..++.++||||||+++|||++|+.||...........+..+..... ......+..
T Consensus       164 ~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~  242 (483)
T 3sv0_A          164 HIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKV-ATSIEALCR  242 (483)
T ss_dssp             BCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHHHH-HSCHHHHHT
T ss_pred             ccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhccc-cccHHHHhc
Confidence                   255788999999999999999999999999999999999999987644333222222221111 111111111


Q ss_pred             CCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          222 GTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       222 ~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                            ..+..+.+++..||+.+|++|| +.+|+++|
T Consensus       243 ------~~p~~l~~li~~cl~~dP~~RPs~~el~~~L  273 (483)
T 3sv0_A          243 ------GYPTEFASYFHYCRSLRFDDKPDYSYLKRLF  273 (483)
T ss_dssp             ------TSCHHHHHHHHHHHTCCTTCCCCHHHHHHHH
T ss_pred             ------CCcHHHHHHHHHHhcCChhhCcCHHHHHHHH
Confidence                  2346789999999999999999 99998764

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=100.00  E-value=1.3e-37  Score=259.91  Aligned_cols=227  Identities=15%  Similarity=0.170  Sum_probs=175.9

Q ss_pred             ccccceeeeccc-CCCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeee--cCceeEEEe
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL--TSVSGKIER   69 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~--~~~~~lV~E   69 (257)
                      +.++.||+++.. +++.+++|...           +.+|++.+.         ++.|+|++++.+.+..  .+..++|||
T Consensus        17 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~---------~l~h~~i~~~~~~~~~~~~~~~~lv~e   87 (279)
T 2w5a_A           17 GSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLR---------ELKHPNIVRYYDRIIDRTNTTLYIVME   87 (279)
T ss_dssp             CSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHH---------HCCCTTBCCEEEEEEEGGGTEEEEEEE
T ss_pred             CCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHH---------hcCCCCCCeEEEEEecCCCceEEEEEe
Confidence            568899999876 45556777654           223444444         7789999999997754  568899999


Q ss_pred             ecCCCCHHHHHhcc--CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCC-----eeeccCCCCceeeCCCCceEEeeecccc
Q 044568           70 PVRNGSLTDIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPP-----ILHCDIKPQNILMDEFWTAKILDFGLAK  142 (257)
Q Consensus        70 ~~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~-----i~h~dl~~~nil~~~~~~~kl~dfg~~~  142 (257)
                      |+++|+|.+++...  ....+++..+..++.|++.||.|||++   +     ++|+||+|+||+++.++.+||+|||.+.
T Consensus        88 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~~  164 (279)
T 2w5a_A           88 YCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRR---SDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLAR  164 (279)
T ss_dssp             CCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH---C------CCCCCSGGGEEECSSSCEEECCCCHHH
T ss_pred             CCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcc---cCCCCeeEEeccchhhEEEcCCCCEEEecCchhe
Confidence            99999999999743  345599999999999999999999999   8     9999999999999999999999999987


Q ss_pred             cCCCCc---ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhh
Q 044568          143 LPNEDF---VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKL  219 (257)
Q Consensus       143 ~~~~~~---~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (257)
                      ......   ....++..|+|||.+.+..++.++||||||+++|+|++|..||.....   .......     ...     
T Consensus       165 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~---~~~~~~i-----~~~-----  231 (279)
T 2w5a_A          165 ILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQ---KELAGKI-----REG-----  231 (279)
T ss_dssp             HC---CHHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHH-----HHT-----
T ss_pred             eeccccccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCH---HHHHHHH-----hhc-----
Confidence            654332   334678899999999988899999999999999999999999975421   1000000     000     


Q ss_pred             hcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHh
Q 044568          220 VRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMM  256 (257)
Q Consensus       220 ~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~  256 (257)
                       .....+...+..+.+++.+||+.||++|| +.|+++.
T Consensus       232 -~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~  268 (279)
T 2w5a_A          232 -KFRRIPYRYSDELNEIITRMLNLKDYHRPSVEEILEN  268 (279)
T ss_dssp             -CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             -ccccCCcccCHHHHHHHHHHcCCCcccCCCHHHHHhC
Confidence             01123344567899999999999999999 9999875

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=100.00  E-value=3.7e-37  Score=259.27  Aligned_cols=222  Identities=17%  Similarity=0.169  Sum_probs=178.3

Q ss_pred             ccccceeeecccCCCC-Ceeeccc------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFNARNS-PWISRVS------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~-~~i~~~~------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||+++...++. +++|...            +.+|++.+.         .+.|+||+++.+.+...+..++||||
T Consensus        26 G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~---------~l~h~~iv~~~~~~~~~~~~~lv~e~   96 (294)
T 2rku_A           26 GGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHR---------SLAHQHVVGFHGFFEDNDFVFVVLEL   96 (294)
T ss_dssp             ETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHH---------TCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             cCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHH---------hCCCCCEeeeeeeeccCCEEEEEEec
Confidence            5788999999776554 4555432            123333333         77899999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC---C
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE---D  147 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~---~  147 (257)
                      +++++|.+++.  ....+++.++..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||.+.....   .
T Consensus        97 ~~~~~L~~~~~--~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~  171 (294)
T 2rku_A           97 CRRRSLLELHK--RRKALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGER  171 (294)
T ss_dssp             CTTCBHHHHHH--HHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECCSTTCC
T ss_pred             CCCCCHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEcCCCCEEEEeccCceecccCccc
Confidence            99999999987  345799999999999999999999999   999999999999999999999999999875432   2


Q ss_pred             cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc-CCCCC
Q 044568          148 FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR-GTKVD  226 (257)
Q Consensus       148 ~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  226 (257)
                      .....+++.|+|||.+.+..++.++|+||||+++|+|++|+.||.......   ...             .... ....+
T Consensus       172 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~---~~~-------------~~~~~~~~~~  235 (294)
T 2rku_A          172 KKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKE---TYL-------------RIKKNEYSIP  235 (294)
T ss_dssp             BCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHH---HHH-------------HHHTTCCCCC
T ss_pred             cccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH---HHH-------------HHhhccCCCc
Confidence            344567889999999998889999999999999999999999997542111   000             0111 11233


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          227 KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       227 ~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ......+.+++.+||+.||++|| ++|+++
T Consensus       236 ~~~~~~~~~li~~~l~~~p~~Rps~~~ll~  265 (294)
T 2rku_A          236 KHINPVAASLIQKMLQTDPTARPTINELLN  265 (294)
T ss_dssp             TTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred             cccCHHHHHHHHHHcccChhhCcCHHHHhh
Confidence            44557789999999999999999 999875

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=100.00  E-value=3.8e-37  Score=286.59  Aligned_cols=229  Identities=17%  Similarity=0.155  Sum_probs=179.5

Q ss_pred             ccccceeeecccCC-CCCeeeccchhh-----hHHHHhHhhhcccccc-ccCCceeeeceeeeecCceeEEEeecCCCCH
Q 044568            4 TKLSNFYRSSFNAR-NSPWISRVSWTA-----DIEVLSVAMRGSKCTR-IRGGLLLNVPVRAKLTSVSGKIERPVRNGSL   76 (257)
Q Consensus         4 ~~~~~~y~~~~~~~-~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~-~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL   76 (257)
                      +.++.||+++...+ +.+++|.+.-..     ..+.... ... .+.. ..|++|+.+...+...+..+|||||+++|+|
T Consensus       352 G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~-E~~-~l~~~~~~~~i~~l~~~~~~~~~~~lV~E~~~gg~L  429 (674)
T 3pfq_A          352 GSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMV-EKR-VLALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDL  429 (674)
T ss_dssp             TTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHH-HHH-HHTCTTCCTTBCCEEEECBCSSEEEEEEECCCSCBH
T ss_pred             CCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHH-HHH-HHHhccCCCeEEEEEEEEEeCCEEEEEEeCcCCCcH
Confidence            57899999997654 457888755211     1111100 000 1112 2699999999999999999999999999999


Q ss_pred             HHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC---CCcccccC
Q 044568           77 TDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN---EDFVIDKR  153 (257)
Q Consensus        77 ~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~---~~~~~~~~  153 (257)
                      .+++..  ...+++.+++.++.|++.||.|||++   +|+||||||+|||++.++.+||+|||+++...   .......|
T Consensus       430 ~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH~~---gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~~~~~~~~G  504 (674)
T 3pfq_A          430 MYHIQQ--VGRFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKTFCG  504 (674)
T ss_dssp             HHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHT---SEECCCCCSTTEEECSSSCEEECCCTTCEECCCTTCCBCCCCS
T ss_pred             HHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhC---CeEeccCChhhEEEcCCCcEEEeecceeeccccCCcccccccC
Confidence            999984  45799999999999999999999999   99999999999999999999999999987532   23345678


Q ss_pred             CCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc-CCCCCHHHHHH
Q 044568          154 DKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR-GTKVDKKNLEN  232 (257)
Q Consensus       154 ~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  232 (257)
                      |+.|+|||++.+..++.++||||||+++|||++|..||.....   ....             ..+.. ...++....+.
T Consensus       505 T~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~---~~~~-------------~~i~~~~~~~p~~~s~~  568 (674)
T 3pfq_A          505 TPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE---DELF-------------QSIMEHNVAYPKSMSKE  568 (674)
T ss_dssp             CSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHH-------------HHHHSSCCCCCTTSCHH
T ss_pred             CCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCH---HHHH-------------HHHHhCCCCCCccCCHH
Confidence            9999999999999999999999999999999999999975521   1111             11112 12445566788


Q ss_pred             HHHHHHHcccCCCCCCC-h-----HHHHH
Q 044568          233 LVKVGLWCVQDEPALRP-M-----KCAVM  255 (257)
Q Consensus       233 l~~l~~~cl~~~p~~RP-~-----~ei~~  255 (257)
                      +.+|+.+||+.||++|| +     +||.+
T Consensus       569 ~~~li~~lL~~dP~~R~~~~~~~~~ei~~  597 (674)
T 3pfq_A          569 AVAICKGLMTKHPGKRLGCGPEGERDIKE  597 (674)
T ss_dssp             HHHHHHHHSCSSSTTCTTCSTTHHHHHHS
T ss_pred             HHHHHHHHccCCHHHCCCCCCCcHHHHhc
Confidence            99999999999999999 8     66653

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.3e-37  Score=261.74  Aligned_cols=226  Identities=18%  Similarity=0.176  Sum_probs=179.1

Q ss_pred             ccccceeeecccC-CCCCeeeccc-------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCC
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS-------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGS   75 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~-------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gs   75 (257)
                      +.++.||++.... +..+++|...       +.+|++.+.         ++.|+|++++.+.+...+..++||||+++|+
T Consensus        40 G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~e~~~l~---------~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~  110 (314)
T 3com_A           40 GSYGSVYKAIHKETGQIVAIKQVPVESDLQEIIKEISIMQ---------QCDSPHVVKYYGSYFKNTDLWIVMEYCGAGS  110 (314)
T ss_dssp             ---CEEEEEEETTTCCEEEEEEEETTSCCHHHHHHHHHHH---------TCCCTTBCCEEEEEEETTEEEEEEECCTTEE
T ss_pred             CCCeEEEEEEECCCCCEEEEEecCchHHHHHHHHHHHHHH---------hCCCCCCccEEEEEEeCCEEEEEeecCCCCC
Confidence            5688999998765 5667787654       344555555         7889999999999999999999999999999


Q ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---ccccc
Q 044568           76 LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---FVIDK  152 (257)
Q Consensus        76 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~~~~~  152 (257)
                      |.+++.. ....+++.++..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||.+......   .....
T Consensus       111 L~~~~~~-~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~  186 (314)
T 3com_A          111 VSDIIRL-RNKTLTEDEIATILQSTLKGLEYLHFM---RKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVI  186 (314)
T ss_dssp             HHHHHHH-HTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECBTTBSCBCCCC
T ss_pred             HHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHhC---CCcCCCcCHHHEEECCCCCEEEeecccchhhhhhccccCccC
Confidence            9999964 456799999999999999999999999   9999999999999999999999999998754332   23446


Q ss_pred             CCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc-CCCCCHHHHH
Q 044568          153 RDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR-GTKVDKKNLE  231 (257)
Q Consensus       153 ~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  231 (257)
                      +++.|+|||.+.+..++.++||||||+++|+|++|..||.......   ..  ..        ...... ....+...+.
T Consensus       187 ~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~---~~--~~--------~~~~~~~~~~~~~~~~~  253 (314)
T 3com_A          187 GTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMR---AI--FM--------IPTNPPPTFRKPELWSD  253 (314)
T ss_dssp             SCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHH---HH--HH--------HHHSCCCCCSSGGGSCH
T ss_pred             CCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChHH---HH--HH--------HhcCCCcccCCcccCCH
Confidence            7888999999998889999999999999999999999997542110   00  00        000001 1122333457


Q ss_pred             HHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          232 NLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       232 ~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .+.+++.+||+.||.+|| +.|+++
T Consensus       254 ~l~~li~~~l~~dp~~Rpt~~~ll~  278 (314)
T 3com_A          254 NFTDFVKQCLVKSPEQRATATQLLQ  278 (314)
T ss_dssp             HHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             HHHHHHHHHccCChhhCcCHHHHHh
Confidence            899999999999999999 999975

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=100.00  E-value=3.6e-37  Score=267.58  Aligned_cols=226  Identities=16%  Similarity=0.180  Sum_probs=176.2

Q ss_pred             ccccceeeeccc-CCCCCeeeccch-----------------hhhHHHHhHhhhccccccc-cCCceeeeceeeeecCce
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW-----------------TADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVS   64 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~-----------------~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~   64 (257)
                      +.++.||++... +++.+++|....                 .+|++.+.         ++ .|+||+++.+.+...+..
T Consensus       105 G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~---------~l~~hp~iv~~~~~~~~~~~~  175 (365)
T 2y7j_A          105 GVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILR---------QVAGHPHIITLIDSYESSSFM  175 (365)
T ss_dssp             CSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHH---------HHTTCTTBCCEEEEEEBSSEE
T ss_pred             CCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHH---------HhcCCCCEeEEEEEEeeCCEE
Confidence            568999999976 677888885432                 22333332         55 699999999999999999


Q ss_pred             eEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccC
Q 044568           65 GKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLP  144 (257)
Q Consensus        65 ~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~  144 (257)
                      ++||||+++++|.+++..  ...+++..+..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||++...
T Consensus       176 ~lv~e~~~g~~L~~~l~~--~~~l~~~~~~~i~~qi~~~L~~LH~~---gi~H~Dlkp~NIl~~~~~~ikl~DfG~~~~~  250 (365)
T 2y7j_A          176 FLVFDLMRKGELFDYLTE--KVALSEKETRSIMRSLLEAVSFLHAN---NIVHRDLKPENILLDDNMQIRLSDFGFSCHL  250 (365)
T ss_dssp             EEEECCCTTCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred             EEEEEeCCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEEEecCccccc
Confidence            999999999999999973  45799999999999999999999999   9999999999999999999999999988754


Q ss_pred             CC--CcccccCCCCccCcccccC------CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhh
Q 044568          145 NE--DFVIDKRDKGYMAPECYKR------TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINREL  216 (257)
Q Consensus       145 ~~--~~~~~~~~~~~~aPE~~~~------~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~  216 (257)
                      ..  ......+|+.|+|||.+.+      ..++.++||||||+++|||++|..||....   ..........     .. 
T Consensus       251 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~---~~~~~~~i~~-----~~-  321 (365)
T 2y7j_A          251 EPGEKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRR---QILMLRMIME-----GQ-  321 (365)
T ss_dssp             CTTCCBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSS---HHHHHHHHHH-----TC-
T ss_pred             CCCcccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCC---HHHHHHHHHh-----CC-
Confidence            43  2345578899999999863      357889999999999999999999997541   1111111100     00 


Q ss_pred             hhhhcCC-CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          217 NKLVRGT-KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       217 ~~~~~~~-~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                         .... ......+..+.+++.+||+.||++|| +.|+++
T Consensus       322 ---~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~  359 (365)
T 2y7j_A          322 ---YQFSSPEWDDRSSTVKDLISRLLQVDPEARLTAEQALQ  359 (365)
T ss_dssp             ---CCCCHHHHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             ---CCCCCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence               0000 00012345689999999999999999 999986

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=100.00  E-value=2.6e-37  Score=264.44  Aligned_cols=229  Identities=18%  Similarity=0.199  Sum_probs=177.1

Q ss_pred             ccccceeeecccC-CCCCeeeccc-----------hhhhHHHHhHhhhccccccc-cCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS-----------WTADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||++.... +..+++|...           +.+|++.+.         .+ .|+|++++.+.+...+..++||||
T Consensus        40 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~---------~l~~~~~iv~~~~~~~~~~~~~lv~e~  110 (327)
T 3lm5_A           40 GKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLE---------LAKSCPRVINLHEVYENTSEIILILEY  110 (327)
T ss_dssp             ETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHH---------HTTTCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHH---------hccCCCCEEEEEEEEEeCCeEEEEEEe
Confidence            5789999998664 6666777543           233444443         34 469999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCC---CCceEEeeecccccCCCC
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE---FWTAKILDFGLAKLPNED  147 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~---~~~~kl~dfg~~~~~~~~  147 (257)
                      +++|+|.+++.......+++.++..++.|++.||.|||++   +++||||||+||+++.   ++.+||+|||++......
T Consensus       111 ~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~---givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~  187 (327)
T 3lm5_A          111 AAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQN---NIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHA  187 (327)
T ss_dssp             CTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESCBTTBCCEEECCGGGCEEC---
T ss_pred             cCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCChHHEEEecCCCCCcEEEeeCccccccCCc
Confidence            9999999999754567899999999999999999999999   9999999999999987   789999999998765433


Q ss_pred             c--ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCC
Q 044568          148 F--VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKV  225 (257)
Q Consensus       148 ~--~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (257)
                      .  ....+|+.|+|||.+.+..++.++||||||+++|||++|..||.......   ........        ....+...
T Consensus       188 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~---~~~~i~~~--------~~~~~~~~  256 (327)
T 3lm5_A          188 CELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQE---TYLNISQV--------NVDYSEET  256 (327)
T ss_dssp             ------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HHHHHHHT--------CCCCCTTT
T ss_pred             cccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchH---HHHHHHhc--------ccccCchh
Confidence            2  34578899999999998999999999999999999999999997542111   11110000        00001122


Q ss_pred             CHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          226 DKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       226 ~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .....+.+.+++.+||+.||.+|| ++|+++
T Consensus       257 ~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~  287 (327)
T 3lm5_A          257 FSSVSQLATDFIQSLLVKNPEKRPTAEICLS  287 (327)
T ss_dssp             TTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             hcccCHHHHHHHHHHcCCChhhCcCHHHHhC
Confidence            334557789999999999999999 999975

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=100.00  E-value=5e-37  Score=259.52  Aligned_cols=223  Identities=22%  Similarity=0.238  Sum_probs=178.8

Q ss_pred             ccccceeeeccc-CCCCCeeeccch----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +.++.||++... ++..+++|....          .+|++.+.         ++.|+|++++.+.+...+..++||||++
T Consensus        33 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~---------~l~h~~i~~~~~~~~~~~~~~lv~e~~~  103 (303)
T 3a7i_A           33 GSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLS---------QCDSPYVTKYYGSYLKDTKLWIIMEYLG  103 (303)
T ss_dssp             CSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHH---------HCCCTTBCCEEEEEEETTEEEEEEECCT
T ss_pred             cCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHH---------hCCCCCEeEEEEEEecCCeEEEEEEeCC
Confidence            578999999854 456677876532          33444443         7789999999999999999999999999


Q ss_pred             CCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---cc
Q 044568           73 NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---FV  149 (257)
Q Consensus        73 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~~  149 (257)
                      +++|.+++.   ...+++.++..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||.+......   ..
T Consensus       104 ~~~L~~~~~---~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~  177 (303)
T 3a7i_A          104 GGSALDLLE---PGPLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRN  177 (303)
T ss_dssp             TEEHHHHHT---TSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECBTTBCCBC
T ss_pred             CCcHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChheEEECCCCCEEEeecccceecCccccccC
Confidence            999999995   45799999999999999999999999   9999999999999999999999999998754332   23


Q ss_pred             cccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHH
Q 044568          150 IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKN  229 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (257)
                      ...+++.|+|||.+.+..++.++||||||+++|+|++|..||......   ... ..         ... ......+...
T Consensus       178 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~---~~~-~~---------~~~-~~~~~~~~~~  243 (303)
T 3a7i_A          178 TFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPM---KVL-FL---------IPK-NNPPTLEGNY  243 (303)
T ss_dssp             CCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH---HHH-HH---------HHH-SCCCCCCSSC
T ss_pred             ccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHH---HHH-HH---------hhc-CCCCCCcccc
Confidence            446788899999999888999999999999999999999999744111   000 00         000 0111223344


Q ss_pred             HHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          230 LENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       230 ~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +..+.+++.+||+.||++|| +.|+++
T Consensus       244 ~~~l~~li~~~l~~dp~~Rps~~~ll~  270 (303)
T 3a7i_A          244 SKPLKEFVEACLNKEPSFRPTAKELLK  270 (303)
T ss_dssp             CHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             CHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence            56799999999999999999 999975

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=2.8e-37  Score=274.90  Aligned_cols=232  Identities=16%  Similarity=0.135  Sum_probs=177.4

Q ss_pred             ccccceeeeccc-CCCCCeeeccchhhh---HHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHH
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSWTAD---IEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDI   79 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~   79 (257)
                      +.++.||+++.. ++..+++|...-...   -...........+..++|+||+++.+.+...+..++||||+++|+|.++
T Consensus       159 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~~~L~~~  238 (446)
T 4ejn_A          159 GTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFH  238 (446)
T ss_dssp             ETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEEECCCSSCBHHHH
T ss_pred             CcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEEEeeCCCCcHHHH
Confidence            578999999854 456678886542110   0011111111144488899999999999999999999999999999999


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHhh-CCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC---CcccccCCC
Q 044568           80 IFCSAERNPYWNQRVRIALDVAKGILYLHD-ECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE---DFVIDKRDK  155 (257)
Q Consensus        80 l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~---~~~~~~~~~  155 (257)
                      +.  ....+++..+..++.|++.||.|||+ +   +|+||||||+|||++.++.+||+|||+++....   ......||+
T Consensus       239 l~--~~~~~~~~~~~~~~~qi~~aL~~LH~~~---giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~  313 (446)
T 4ejn_A          239 LS--RERVFSEDRARFYGAEIVSALDYLHSEK---NVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTP  313 (446)
T ss_dssp             HH--HHSCCCHHHHHHHHHHHHHHHHHHHHHT---CCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC-----CCSSSCG
T ss_pred             HH--hcCCCCHHHHHHHHHHHHHHHHHHhhcC---CEEECCCCHHHEEECCCCCEEEccCCCceeccCCCcccccccCCc
Confidence            97  34679999999999999999999998 8   999999999999999999999999999875322   234557899


Q ss_pred             CccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHH
Q 044568          156 GYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVK  235 (257)
Q Consensus       156 ~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  235 (257)
                      .|+|||.+.+..++.++||||||+++|||++|+.||.....   .......            ......++....+.+.+
T Consensus       314 ~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~---~~~~~~i------------~~~~~~~p~~~~~~~~~  378 (446)
T 4ejn_A          314 EYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH---EKLFELI------------LMEEIRFPRTLGPEAKS  378 (446)
T ss_dssp             GGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHH------------HHCCCCCCTTSCHHHHH
T ss_pred             cccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCH---HHHHHHH------------HhCCCCCCccCCHHHHH
Confidence            99999999999999999999999999999999999975421   1111100            01112334455678999


Q ss_pred             HHHHcccCCCCCCC------hHHHHH
Q 044568          236 VGLWCVQDEPALRP------MKCAVM  255 (257)
Q Consensus       236 l~~~cl~~~p~~RP------~~ei~~  255 (257)
                      ++.+||+.||.+||      ++|+++
T Consensus       379 li~~~L~~dP~~R~~~~~~t~~ell~  404 (446)
T 4ejn_A          379 LLSGLLKKDPKQRLGGGSEDAKEIMQ  404 (446)
T ss_dssp             HHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred             HHHHHcccCHHHhCCCCCCCHHHHHh
Confidence            99999999999996      556553

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=100.00  E-value=4.7e-37  Score=271.51  Aligned_cols=227  Identities=17%  Similarity=0.179  Sum_probs=169.1

Q ss_pred             ccccceeeecccC-CCCCeeeccc-----------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCcee
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS-----------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSG   65 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~-----------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~   65 (257)
                      +.++.||++.... +..+++|...                 +.+|++.+.         ++.|+||+++.+.+. .+..+
T Consensus       146 G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~---------~l~hpniv~l~~~~~-~~~~~  215 (419)
T 3i6u_A          146 GACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILK---------KLNHPCIIKIKNFFD-AEDYY  215 (419)
T ss_dssp             CSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHH---------HCCCTTBCCCCEEEE-SSEEE
T ss_pred             CCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHH---------hCCCCCEeeEEEEEe-cCceE
Confidence            5789999998655 4566776532                 345666666         789999999999875 45578


Q ss_pred             EEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCC---CceEEeeecccc
Q 044568           66 KIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF---WTAKILDFGLAK  142 (257)
Q Consensus        66 lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~---~~~kl~dfg~~~  142 (257)
                      +||||+++|+|.+++.  ....+++.++..++.|++.||.|||++   +++||||||+||+++.+   ..+||+|||+++
T Consensus       216 lv~e~~~~g~L~~~l~--~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~~~~kl~DFG~a~  290 (419)
T 3i6u_A          216 IVLELMEGGELFDKVV--GNKRLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKITDFGHSK  290 (419)
T ss_dssp             EEEECCTTCBGGGGTS--SSCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSSSCCEEECCSSTTT
T ss_pred             EEEEcCCCCcHHHHHh--ccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCCCcceEEEeecccce
Confidence            9999999999999997  556799999999999999999999999   99999999999999654   459999999998


Q ss_pred             cCCCCc--ccccCCCCccCcccccC---CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhh
Q 044568          143 LPNEDF--VIDKRDKGYMAPECYKR---TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELN  217 (257)
Q Consensus       143 ~~~~~~--~~~~~~~~~~aPE~~~~---~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (257)
                      ......  ....+|+.|+|||.+..   ..++.++||||||+++|+|++|..||..........   .....    ....
T Consensus       291 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~~~---~~i~~----~~~~  363 (419)
T 3i6u_A          291 ILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLK---DQITS----GKYN  363 (419)
T ss_dssp             SCC-----------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCCHH---HHHHT----TCCC
T ss_pred             ecCCCccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHHHH---HHHhc----CCCC
Confidence            654332  44578999999999863   567899999999999999999999997543222110   00000    0000


Q ss_pred             hhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          218 KLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       218 ~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                       ...  .......+.+.+++.+||+.||++|| ++|+++
T Consensus       364 -~~~--~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~  399 (419)
T 3i6u_A          364 -FIP--EVWAEVSEKALDLVKKLLVVDPKARFTTEEALR  399 (419)
T ss_dssp             -CCH--HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             -CCc--hhhcccCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence             000  00112346789999999999999999 999986

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=100.00  E-value=2.1e-37  Score=259.13  Aligned_cols=227  Identities=17%  Similarity=0.215  Sum_probs=176.5

Q ss_pred             ccccceeeeccc-CCCCCeeeccc---------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEE
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS---------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~---------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV   67 (257)
                      +.++.||+++.. +++.+++|...               +.+|++.+.         ++.|+|++++.+.+...+..++|
T Consensus        16 G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~i~~~~~~~~~~~~~~lv   86 (283)
T 3bhy_A           16 GQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILR---------EIRHPNIITLHDIFENKTDVVLI   86 (283)
T ss_dssp             CSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHH---------HCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHH---------hCCCCCeeehhheecCCCeEEEE
Confidence            568899999976 46666776432               345555555         78899999999999999999999


Q ss_pred             EeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCC----ceEEeeeccccc
Q 044568           68 ERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW----TAKILDFGLAKL  143 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~----~~kl~dfg~~~~  143 (257)
                      |||+++++|.+++..  ...+++.++..++.|++.||.|||++   +++|+||+|+||+++.++    .++|+|||.+..
T Consensus        87 ~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~  161 (283)
T 3bhy_A           87 LELVSGGELFDFLAE--KESLTEDEATQFLKQILDGVHYLHSK---RIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHK  161 (283)
T ss_dssp             EECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSSSSCCEEECCCTTCEE
T ss_pred             EeecCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChHHEEEecCCCCCCceEEEeccccee
Confidence            999999999999973  45799999999999999999999999   999999999999998876    799999999875


Q ss_pred             CCCC--cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc
Q 044568          144 PNED--FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR  221 (257)
Q Consensus       144 ~~~~--~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (257)
                      ....  .....+++.|+|||.+.+..++.++|+||||+++|+|++|..||.....   ......+.....   ..     
T Consensus       162 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~---~~~~~~~~~~~~---~~-----  230 (283)
T 3bhy_A          162 IEAGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETK---QETLTNISAVNY---DF-----  230 (283)
T ss_dssp             CC--------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSH---HHHHHHHHTTCC---CC-----
T ss_pred             ccCCCcccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcch---HHHHHHhHhccc---CC-----
Confidence            4332  2344678889999999988899999999999999999999999975421   111111100000   00     


Q ss_pred             CCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          222 GTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       222 ~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ........++.+.+++.+||+.||.+|| +.|+++
T Consensus       231 ~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~  265 (283)
T 3bhy_A          231 DEEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLE  265 (283)
T ss_dssp             CHHHHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             cchhcccCCHHHHHHHHHHccCCHhHCcCHHHHHh
Confidence            0000112346789999999999999999 999986

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=100.00  E-value=2e-37  Score=263.27  Aligned_cols=237  Identities=16%  Similarity=0.110  Sum_probs=172.9

Q ss_pred             ccccceeeeccc-CCCCCeeeccc---------hhhhHHHHhHhhhcccccc-ccCCceeeeceeeeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS---------WTADIEVLSVAMRGSKCTR-IRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~---------~~~~~~~~~~~~~~~~~~~-~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +.++.||+++.. ++..+++|...         +.+|++.+.         + ..|+||+++.+.+...+..++||||++
T Consensus        24 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~---------~~~~h~~i~~~~~~~~~~~~~~lv~e~~~   94 (316)
T 2ac3_A           24 GAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLY---------QCQGHRNVLELIEFFEEEDRFYLVFEKMR   94 (316)
T ss_dssp             CSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHH---------HTCCCTTBCCEEEEEEETTEEEEEEECCT
T ss_pred             CceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHH---------HhcCCCCeeeEEEEEeeCCEEEEEEEcCC
Confidence            467899999854 56677887653         234444443         4 469999999999999999999999999


Q ss_pred             CCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCc---eEEeeecccccCCCC--
Q 044568           73 NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT---AKILDFGLAKLPNED--  147 (257)
Q Consensus        73 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~---~kl~dfg~~~~~~~~--  147 (257)
                      +|+|.+++..  ...+++.++..++.|++.||.|||++   +++||||||+||+++.++.   +||+|||++......  
T Consensus        95 ~~~L~~~l~~--~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~  169 (316)
T 2ac3_A           95 GGSILSHIHK--RRHFNELEASVVVQDVASALDFLHNK---GIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGD  169 (316)
T ss_dssp             TCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESCSSSSCSEEECCTTCCC-------
T ss_pred             CCcHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEEccCCCcCceEEEEccCccccccCCc
Confidence            9999999974  45789999999999999999999999   9999999999999987765   999999988643211  


Q ss_pred             --------cccccCCCCccCcccccC-----CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhh
Q 044568          148 --------FVIDKRDKGYMAPECYKR-----TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINR  214 (257)
Q Consensus       148 --------~~~~~~~~~~~aPE~~~~-----~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~  214 (257)
                              .....+|+.|+|||.+..     ..++.++||||||+++|||++|..||.............. ........
T Consensus       170 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~-~~~~~~~~  248 (316)
T 2ac3_A          170 CSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGE-ACPACQNM  248 (316)
T ss_dssp             ------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC-----CCHHHHHH
T ss_pred             cccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccc-cchhHHHH
Confidence                    123458889999999875     4578899999999999999999999976533220000000 00000000


Q ss_pred             hhhhhhcCC-CCCH----HHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          215 ELNKLVRGT-KVDK----KNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       215 ~~~~~~~~~-~~~~----~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ......... ..+.    ..+..+.+++.+||+.||.+|| ++|+++
T Consensus       249 ~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~  295 (316)
T 2ac3_A          249 LFESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQ  295 (316)
T ss_dssp             HHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             HHHHHhccCcccCchhcccCCHHHHHHHHHHhhCChhhCCCHHHHhc
Confidence            001111111 1221    2346789999999999999999 999986

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=100.00  E-value=3.7e-37  Score=264.33  Aligned_cols=223  Identities=17%  Similarity=0.153  Sum_probs=178.3

Q ss_pred             ccccceeeecccCCCC-Ceeeccc------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFNARNS-PWISRVS------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~-~~i~~~~------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||+++...++. +++|...            +.+|++.+.         .+.|+||+++.+.+...+..++||||
T Consensus        52 G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~~~~~~~lv~e~  122 (335)
T 2owb_A           52 GGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHR---------SLAHQHVVGFHGFFEDNDFVFVVLEL  122 (335)
T ss_dssp             ETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHH---------TCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             CCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHH---------hCCCCCCCeEEEEEecCCeEEEEEec
Confidence            5788999999776554 4565432            123333333         78899999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC---C
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE---D  147 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~---~  147 (257)
                      +++++|.+++..  ...+++.++..++.|++.||.|||++   +++|+||+|+||+++.++.+||+|||++.....   .
T Consensus       123 ~~~~~L~~~~~~--~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~  197 (335)
T 2owb_A          123 CRRRSLLELHKR--RKALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGER  197 (335)
T ss_dssp             CTTCBHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECCSTTCC
T ss_pred             CCCCCHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHC---CCEecCCCchhEEEcCCCCEEEeeccCceecccCccc
Confidence            999999999873  46799999999999999999999999   999999999999999999999999999875432   2


Q ss_pred             cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCH
Q 044568          148 FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDK  227 (257)
Q Consensus       148 ~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (257)
                      .....++..|+|||.+.+..++.++||||||+++|||++|+.||.......   ......     .       .....+.
T Consensus       198 ~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~---~~~~~~-----~-------~~~~~~~  262 (335)
T 2owb_A          198 KKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKE---TYLRIK-----K-------NEYSIPK  262 (335)
T ss_dssp             BCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHH---HHHHHH-----H-------TCCCCCT
T ss_pred             ccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHHH---HHHHHh-----c-------CCCCCCc
Confidence            244567889999999998889999999999999999999999997542111   110000     0       0112233


Q ss_pred             HHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          228 KNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       228 ~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .....+.+++.+||+.||++|| ++|+++
T Consensus       263 ~~~~~~~~li~~~l~~dp~~Rps~~ell~  291 (335)
T 2owb_A          263 HINPVAASLIQKMLQTDPTARPTINELLN  291 (335)
T ss_dssp             TSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred             cCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            4456788999999999999999 999875

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1.7e-37  Score=263.45  Aligned_cols=228  Identities=16%  Similarity=0.138  Sum_probs=170.0

Q ss_pred             ccccceeeeccc-CCCCCeeeccch------------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||++... ++..+++|....            .+|++.+         .++.|+||+++.+.+...+..++||||
T Consensus        45 G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l---------~~l~hp~iv~~~~~~~~~~~~~lv~e~  115 (309)
T 2h34_A           45 GGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTA---------GRLQEPHVVPIHDFGEIDGQLYVDMRL  115 (309)
T ss_dssp             CSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHH---------TTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             CCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHH---------hhcCCCCeeEEEEEEeeCCeEEEEEEe
Confidence            578999999965 455677776542            2233333         378899999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc--
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF--  148 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~--  148 (257)
                      +++++|.+++..  ...+++.++..++.|++.||.|||++   +++|+||+|+||+++.++.+||+|||++.......  
T Consensus       116 ~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~  190 (309)
T 2h34_A          116 INGVDLAAMLRR--QGPLAPPRAVAIVRQIGSALDAAHAA---GATHRDVKPENILVSADDFAYLVDFGIASATTDEKLT  190 (309)
T ss_dssp             CCCEEHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSCCC----------
T ss_pred             cCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---cCCcCCCChHHEEEcCCCCEEEecCccCccccccccc
Confidence            999999999974  45699999999999999999999999   99999999999999999999999999987543322  


Q ss_pred             --ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCC
Q 044568          149 --VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVD  226 (257)
Q Consensus       149 --~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (257)
                        ....+++.|+|||.+.+..++.++||||||+++|||++|+.||....   .. .......        .........+
T Consensus       191 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~---~~-~~~~~~~--------~~~~~~~~~~  258 (309)
T 2h34_A          191 QLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQ---LS-VMGAHIN--------QAIPRPSTVR  258 (309)
T ss_dssp             ------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCH---HH-HHHHHHH--------SCCCCGGGTS
T ss_pred             cccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCch---HH-HHHHHhc--------cCCCCccccC
Confidence              34467888999999998889999999999999999999999997541   11 1100000        0000011223


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCC--hHHHHHhC
Q 044568          227 KKNLENLVKVGLWCVQDEPALRP--MKCAVMML  257 (257)
Q Consensus       227 ~~~~~~l~~l~~~cl~~~p~~RP--~~ei~~~L  257 (257)
                      ...+..+.+++.+||+.||++||  ++++++.|
T Consensus       259 ~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l  291 (309)
T 2h34_A          259 PGIPVAFDAVIARGMAKNPEDRYVTCGDLSAAA  291 (309)
T ss_dssp             TTCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHH
T ss_pred             CCCCHHHHHHHHHhccCCHHHHHHhHHHHHHHH
Confidence            34456789999999999999999  88887653

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=100.00  E-value=8.7e-38  Score=268.20  Aligned_cols=237  Identities=20%  Similarity=0.184  Sum_probs=177.0

Q ss_pred             ccccceeeecccCCCCCeeeccchh------hhHHHHhHhhhccccccccCCceeeeceeeeecC----ceeEEEeecCC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVSWT------ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTS----VSGKIERPVRN   73 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~----~~~lV~E~~~~   73 (257)
                      +.++.||+++. ++..+++|...-.      +|.+.+.       ...++|+|++++.+.+...+    ..++||||+++
T Consensus        53 G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~e~~~~~-------~~~l~h~ni~~~~~~~~~~~~~~~~~~lv~e~~~~  124 (342)
T 1b6c_B           53 GRFGEVWRGKW-RGEEVAVKIFSSREERSWFREAEIYQ-------TVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEH  124 (342)
T ss_dssp             ETTEEEEEEEE-TTEEEEEEEECGGGHHHHHHHHHHHH-------HSCCCCTTBCCEEEEEECCCSSCCCEEEEECCCTT
T ss_pred             CCCcEEEEEEE-cCccEEEEEeCchhHHHHHHHHHHHH-------HhhcCCCcEEEEEeeecccCCccceeEEEEeecCC
Confidence            56889999997 4777888876532      2222222       11378999999999998776    78999999999


Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHh--------hCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLH--------DECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN  145 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh--------~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~  145 (257)
                      |+|.+++..   ..+++.++..++.|++.||.|||        ++   +++|+||||+||+++.++.+||+|||++....
T Consensus       125 g~L~~~l~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~  198 (342)
T 1b6c_B          125 GSLFDYLNR---YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKSKNILVKKNGTCCIADLGLAVRHD  198 (342)
T ss_dssp             CBHHHHHHH---CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBC---EEECSCCSGGGEEECTTSCEEECCCTTCEEEE
T ss_pred             CcHHHHHhc---cCccHHHHHHHHHHHHHHHHHHHHHHhhhcccC---CeeeCCCCHHHEEECCCCCEEEEECCCceecc
Confidence            999999964   46899999999999999999999        88   99999999999999999999999999986533


Q ss_pred             CC-------cccccCCCCccCcccccCCC------CCccccchhHHHHHHHHHhc----------CCCCCcCCCChhhHH
Q 044568          146 ED-------FVIDKRDKGYMAPECYKRTP------ISVKADVYGYGIVLLETICC----------RKNMEIDASKPEEII  202 (257)
Q Consensus       146 ~~-------~~~~~~~~~~~aPE~~~~~~------~~~~~Di~s~G~~l~el~~g----------~~pf~~~~~~~~~~~  202 (257)
                      ..       .....+|+.|+|||.+.+..      ++.++||||||+++|||++|          ..||.......... 
T Consensus       199 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~-  277 (342)
T 1b6c_B          199 SATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSV-  277 (342)
T ss_dssp             TTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCH-
T ss_pred             ccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCccccCcCcccH-
Confidence            22       13446788999999997652      33789999999999999999          77886543222111 


Q ss_pred             HHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          203 LTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                       ..+... .........+.....+.+....+.+++.+||+.||++|| +.|+++.|
T Consensus       278 -~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L  331 (342)
T 1b6c_B          278 -EEMRKV-VCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTL  331 (342)
T ss_dssp             -HHHHHH-HTTSCCCCCCCGGGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHH
T ss_pred             -HHHHHH-HHHHHhCCCCcccccchhHHHHHHHHHHHHhccChhhCCCHHHHHHHH
Confidence             111100 000000000000012346678899999999999999999 99998764

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=100.00  E-value=5e-37  Score=257.68  Aligned_cols=227  Identities=19%  Similarity=0.221  Sum_probs=172.1

Q ss_pred             ccccceeeecccC-CCCCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +.++.||+++... +..+++|...          +.+|++.+.         ++.|+||+++.+.+...+..++||||++
T Consensus        33 G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~---------~l~hp~iv~~~~~~~~~~~~~lv~e~~~  103 (285)
T 3is5_A           33 GAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLK---------SLDHPNIIKIFEVFEDYHNMYIVMETCE  103 (285)
T ss_dssp             CSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHH---------TCCCTTBCCEEEEEECSSEEEEEECCCS
T ss_pred             CCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHH---------hCCCchHHhHHHheecCCeEEEEEEeCC
Confidence            5789999998654 5556666543          234555555         7889999999999999999999999999


Q ss_pred             CCCHHHHHhcc--CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceee---CCCCceEEeeecccccCCCC
Q 044568           73 NGSLTDIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKILDFGLAKLPNED  147 (257)
Q Consensus        73 ~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~---~~~~~~kl~dfg~~~~~~~~  147 (257)
                      +|+|.+.+...  ....+++..+..++.|++.||.|||++   +++|+||+|+||++   +.++.+||+|||++......
T Consensus       104 ~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~~~  180 (285)
T 3is5_A          104 GGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQ---HVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSD  180 (285)
T ss_dssp             CCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC----
T ss_pred             CCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhC---CEEECCCCHHHEEEecCCCCCCEEEEeeecceecCCc
Confidence            99999999642  346799999999999999999999999   99999999999999   45678999999998754322


Q ss_pred             --cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCC
Q 044568          148 --FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKV  225 (257)
Q Consensus       148 --~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (257)
                        .....+++.|+|||.+. ..++.++||||||+++|||++|..||......  . .....        .. ........
T Consensus       181 ~~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~--~-~~~~~--------~~-~~~~~~~~  247 (285)
T 3is5_A          181 EHSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLE--E-VQQKA--------TY-KEPNYAVE  247 (285)
T ss_dssp             ------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHH--H-HHHHH--------HH-CCCCCCC-
T ss_pred             ccCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCCHH--H-HHhhh--------cc-CCcccccc
Confidence              34556788999999875 46889999999999999999999999754211  0 00000        00 00000011


Q ss_pred             CHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          226 DKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       226 ~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .....+.+.+++.+||+.||++|| ++|+++
T Consensus       248 ~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~  278 (285)
T 3is5_A          248 CRPLTPQAVDLLKQMLTKDPERRPSAAQVLH  278 (285)
T ss_dssp             -CCCCHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred             cCcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            111346788999999999999999 999985

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=100.00  E-value=3.2e-37  Score=264.11  Aligned_cols=238  Identities=18%  Similarity=0.199  Sum_probs=176.1

Q ss_pred             ccccceeeecccC-CCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      +.++.||+++... +..+++|...           +.+|++.+.         ++.|+||+++.+.+...+..++||||+
T Consensus        36 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~~~~~~~lv~e~~  106 (331)
T 4aaa_A           36 GSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLK---------QLRHENLVNLLEVCKKKKRWYLVFEFV  106 (331)
T ss_dssp             GTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHH---------HCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             cCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHh---------hCCCCCEeeEEEEeecCCEEEEEEecC
Confidence            5789999999765 5667777542           223444444         788999999999999999999999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---c
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---F  148 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~  148 (257)
                      ++++|.+++.  ....+++..+..++.|++.||.|||++   +++|+||+|+||+++.++.+||+|||++......   .
T Consensus       107 ~~~~l~~~~~--~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~  181 (331)
T 4aaa_A          107 DHTILDDLEL--FPNGLDYQVVQKYLFQIINGIGFCHSH---NIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVY  181 (331)
T ss_dssp             SEEHHHHHHH--STTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCTTC----------
T ss_pred             CcchHHHHHh--hccCCCHHHHHHHHHHHHHHHHHHHHC---CEEccCcChheEEEcCCCcEEEEeCCCceeecCCcccc
Confidence            9999998876  556799999999999999999999999   9999999999999999999999999998754322   2


Q ss_pred             ccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHH-------HHhhh-hhhhhhh
Q 044568          149 VIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWV-------YKCFI-NRELNKL  219 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~  219 (257)
                      ....+++.|+|||.+.+. .++.++||||+|+++|+|++|+.||................       ...+. .+.....
T Consensus       182 ~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (331)
T 4aaa_A          182 DDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGV  261 (331)
T ss_dssp             --CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHHCGGGTTC
T ss_pred             CCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhhhHhhhccccccc
Confidence            445678899999999875 68999999999999999999999997653221111110000       00000 0000000


Q ss_pred             hcCC--------CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          220 VRGT--------KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       220 ~~~~--------~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ..+.        ......++.+.+++.+||+.||++|| ++|+++
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~  306 (331)
T 4aaa_A          262 RLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLH  306 (331)
T ss_dssp             CCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred             cCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhc
Confidence            0000        00113457899999999999999999 999875

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=2.5e-37  Score=265.77  Aligned_cols=229  Identities=15%  Similarity=0.099  Sum_probs=171.6

Q ss_pred             ccccceeeecccCCC-CCeeeccc--------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEE
Q 044568            4 TKLSNFYRSSFNARN-SPWISRVS--------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIE   68 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~-~~~i~~~~--------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~   68 (257)
                      +.++.||++.....+ .+++|...              +.+|++.+.         ++.|+||+++.+.+...+..++||
T Consensus        37 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~---------~l~hpniv~~~~~~~~~~~~~lv~  107 (345)
T 3hko_A           37 GSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMK---------KLHHPNIARLYEVYEDEQYICLVM  107 (345)
T ss_dssp             CSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHH---------HCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHH---------hCCCCCcceeehhhccCCeEEEEE
Confidence            578999999875544 45777543              334555555         778999999999999999999999


Q ss_pred             eecCCCCHHHHHhcc--------------------------------------CCCCCCHHHHHHHHHHHHHHHHHHhhC
Q 044568           69 RPVRNGSLTDIIFCS--------------------------------------AERNPYWNQRVRIALDVAKGILYLHDE  110 (257)
Q Consensus        69 E~~~~gsL~~~l~~~--------------------------------------~~~~l~~~~~~~~~~~i~~~l~~lh~~  110 (257)
                      ||+++|+|.+++...                                      ....+++..+..++.|++.||.|||++
T Consensus       108 e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~  187 (345)
T 3hko_A          108 ELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLHNQ  187 (345)
T ss_dssp             ECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             eCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHC
Confidence            999999999999521                                      012235677888999999999999999


Q ss_pred             CCCCeeeccCCCCceeeCCCC--ceEEeeecccccCCC-------CcccccCCCCccCcccccC--CCCCccccchhHHH
Q 044568          111 CEPPILHCDIKPQNILMDEFW--TAKILDFGLAKLPNE-------DFVIDKRDKGYMAPECYKR--TPISVKADVYGYGI  179 (257)
Q Consensus       111 ~~~~i~h~dl~~~nil~~~~~--~~kl~dfg~~~~~~~-------~~~~~~~~~~~~aPE~~~~--~~~~~~~Di~s~G~  179 (257)
                         +++||||+|+||+++.++  .+||+|||++.....       ......+|+.|+|||.+.+  ..++.++||||||+
T Consensus       188 ---~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~  264 (345)
T 3hko_A          188 ---GICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGV  264 (345)
T ss_dssp             ---TEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHHHHHHHHH
T ss_pred             ---CccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHHHHHHHHH
Confidence               999999999999998766  899999999874321       1245578889999999875  56889999999999


Q ss_pred             HHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          180 VLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       180 ~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ++|||++|+.||.......   ........        .............+.+.+++.+||+.||.+|| +.|+++
T Consensus       265 il~el~~g~~pf~~~~~~~---~~~~~~~~--------~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~  330 (345)
T 3hko_A          265 LLHLLLMGAVPFPGVNDAD---TISQVLNK--------KLCFENPNYNVLSPLARDLLSNLLNRNVDERFDAMRALQ  330 (345)
T ss_dssp             HHHHHHHSSCSSCCSSHHH---HHHHHHHC--------CCCTTSGGGGGSCHHHHHHHHHHSCSCTTTSCCHHHHHH
T ss_pred             HHHHHHHCCCCCCCCChHH---HHHHHHhc--------ccccCCcccccCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence            9999999999997552111   11111000        00000011122457789999999999999999 999976

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=100.00  E-value=3.7e-38  Score=274.19  Aligned_cols=231  Identities=6%  Similarity=-0.074  Sum_probs=162.1

Q ss_pred             ccccceeeeccc-CCCCCeeeccch------------hhhHHHHhHhhhccccccccCCceeeecee-------eeec--
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVR-------AKLT--   61 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~-------~~~~--   61 (257)
                      +.++.||+++.. ++..+++|....            .+|++.+.      .+.+ .|+|++++...       +...  
T Consensus        73 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~------~l~~-~hp~iv~~~~~~~~p~d~~~~~~~  145 (371)
T 3q60_A           73 GDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAA------RLLG-ESPEEARDRRRLLLPSDAVAVQSQ  145 (371)
T ss_dssp             CSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHH------HHHC-----------CBCCCCEEEEETTS
T ss_pred             CCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHH------Hhcc-cChhhhhhceeEEeeehheecCCC
Confidence            578999999965 566778887553            12222222      2335 79998775432       2222  


Q ss_pred             ---------------CceeEEEeecCCCCHHHHHhccCCCCCCHHHH------HHHHHHHHHHHHHHhhCCCCCeeeccC
Q 044568           62 ---------------SVSGKIERPVRNGSLTDIIFCSAERNPYWNQR------VRIALDVAKGILYLHDECEPPILHCDI  120 (257)
Q Consensus        62 ---------------~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~------~~~~~~i~~~l~~lh~~~~~~i~h~dl  120 (257)
                                     ...+|||||++ |+|.+++... ...+++..+      ..++.|++.||.|||++   +|+||||
T Consensus       146 ~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~-~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~---~ivHrDi  220 (371)
T 3q60_A          146 PPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTL-DFVYVFRGDEGILALHILTAQLIRLAANLQSK---GLVHGHF  220 (371)
T ss_dssp             CSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHH-HHSCCCCHHHHHHHHHHHHHHHHHHHHHHHHT---TEEETTC
T ss_pred             CCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHh-ccccchhhhhhhhhHHHHHHHHHHHHHHHHHC---CCccCcC
Confidence                           34799999998 8999999752 333454555      67779999999999999   9999999


Q ss_pred             CCCceeeCCCCceEEeeecccccCCCCcccccCCCCccCcccccC--CCCCccccchhHHHHHHHHHhcCCCCCcCCCCh
Q 044568          121 KPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMAPECYKR--TPISVKADVYGYGIVLLETICCRKNMEIDASKP  198 (257)
Q Consensus       121 ~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~aPE~~~~--~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~  198 (257)
                      ||+|||++.++.+||+|||+++..........+|+.|+|||.+.+  ..++.++||||||+++|||++|+.||.......
T Consensus       221 kp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~  300 (371)
T 3q60_A          221 TPDNLFIMPDGRLMLGDVSALWKVGTRGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGI  300 (371)
T ss_dssp             SGGGEEECTTSCEEECCGGGEEETTCEEEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTTBCCTTC
T ss_pred             CHHHEEECCCCCEEEEecceeeecCCCccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCCCcCccc
Confidence            999999999999999999999877665546677799999999987  678999999999999999999999998663221


Q ss_pred             hhHHHHHHHHHhhhhhhhhhhhcCC---CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          199 EEIILTNWVYKCFINRELNKLVRGT---KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ...         +............   ......++.+.+++.+||+.||++|| +.|+++
T Consensus       301 ~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  352 (371)
T 3q60_A          301 KGS---------WKRPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAME  352 (371)
T ss_dssp             TTC---------CCBCCTTSCCCCSCCCTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTT
T ss_pred             ccc---------hhhhhhhhccccccchhhccCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            100         0000000000000   11224567899999999999999999 999875

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=100.00  E-value=5.1e-38  Score=268.57  Aligned_cols=236  Identities=19%  Similarity=0.255  Sum_probs=178.7

Q ss_pred             ccccceeeecc-----cCCCCCeeeccc---------hhhhHHHHhHhhhccccccccCCceeeeceeeeecC--ceeEE
Q 044568            4 TKLSNFYRSSF-----NARNSPWISRVS---------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTS--VSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~-----~~~~~~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~--~~~lV   67 (257)
                      +.++.||++++     .++..+++|...         +.+|++.+.         ++.|+|++++.+.+...+  ..++|
T Consensus        52 G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~~~~~~~~~lv  122 (326)
T 2w1i_A           52 GNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILK---------SLQHDNIVKYKGVCYSAGRRNLKLI  122 (326)
T ss_dssp             CSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHH---------TCCCTTBCCEEEEECC----CCEEE
T ss_pred             CCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHH---------hCCCCCeeeEEEEEEecCCCceEEE
Confidence            57889999984     356667777654         334555554         788999999999877544  78999


Q ss_pred             EeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC
Q 044568           68 ERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED  147 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~  147 (257)
                      |||+++|+|.+++.. ....+++.++..++.|++.||.|||++   +++|+||+|+||+++.++.+||+|||++......
T Consensus       123 ~e~~~~~~L~~~l~~-~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~~~  198 (326)
T 2w1i_A          123 MEYLPYGSLRDYLQK-HKERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDFGLTKVLPQD  198 (326)
T ss_dssp             ECCCTTCBHHHHHHH-STTSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCEECCSS
T ss_pred             EECCCCCCHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHHhC---CEeccCCCcceEEEcCCCcEEEecCcchhhcccc
Confidence            999999999999986 456799999999999999999999999   9999999999999999999999999998765433


Q ss_pred             c------ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHH----hhhhhhhh
Q 044568          148 F------VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYK----CFINRELN  217 (257)
Q Consensus       148 ~------~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~----~~~~~~~~  217 (257)
                      .      ....++..|+|||.+.+..++.++||||||+++|||++|..||.....   .  .......    ......+.
T Consensus       199 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~  273 (326)
T 2w1i_A          199 KEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPA---E--FMRMIGNDKQGQMIVFHLI  273 (326)
T ss_dssp             CSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHH---H--HHHHHCTTCCTHHHHHHHH
T ss_pred             ccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHH---H--HHHhhccccchhhhHHHHH
Confidence            2      223445669999999888889999999999999999999999863310   0  0000000    00000111


Q ss_pred             hhhcC---CCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          218 KLVRG---TKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       218 ~~~~~---~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ..+..   ...+...+..+.+++.+||+.||++|| +.|+++.|
T Consensus       274 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L  317 (326)
T 2w1i_A          274 ELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRV  317 (326)
T ss_dssp             HHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHH
T ss_pred             HHhhcCCCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            11111   123455667899999999999999999 99998764

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=100.00  E-value=1.5e-36  Score=261.30  Aligned_cols=245  Identities=15%  Similarity=0.155  Sum_probs=178.7

Q ss_pred             ccccceeeecccCCC--CCeeeccc--------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCC
Q 044568            4 TKLSNFYRSSFNARN--SPWISRVS--------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRN   73 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~--~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~   73 (257)
                      +.++.||++.....+  .+++|...        +.+|++.+......   ....+.+++.+...+...+..++||||+ +
T Consensus        30 G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~---~~~~~~~~~~~~~~~~~~~~~~lv~e~~-~  105 (355)
T 2eu9_A           30 GTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEK---DKENKFLCVLMSDWFNFHGHMCIAFELL-G  105 (355)
T ss_dssp             ETTEEEEEEEETTTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHH---CTTSCSCBCCEEEEEEETTEEEEEEECC-C
T ss_pred             cCCeEEEEEEecCCCceEEEEEEEcccccchhHHHHHHHHHHHHhhc---CCCCceeEEEeeeeeeeCCeEEEEEecc-C
Confidence            568899999865543  57777654        23444444411111   1223344788888888999999999999 6


Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceee-------------------CCCCceE
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM-------------------DEFWTAK  134 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~-------------------~~~~~~k  134 (257)
                      ++|.+.+.......+++.++..++.|++.||.|||++   +++||||||+||++                   +.++.+|
T Consensus       106 ~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~k  182 (355)
T 2eu9_A          106 KNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHEN---QLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTSIR  182 (355)
T ss_dssp             CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEESCCCEEEEECCC-CCCEEEESCCCEE
T ss_pred             CChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEecccccccccccccccccccCCCcEE
Confidence            6888888754556799999999999999999999999   99999999999999                   5678999


Q ss_pred             EeeecccccCCCCcccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHh----
Q 044568          135 ILDFGLAKLPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKC----  210 (257)
Q Consensus       135 l~dfg~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~----  210 (257)
                      |+|||++...........+|+.|+|||.+.+..++.++||||||+++|||++|..||.................+.    
T Consensus       183 l~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~p~~~  262 (355)
T 2eu9_A          183 VADFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENREHLVMMEKILGPIPSHM  262 (355)
T ss_dssp             ECCCTTCEETTSCCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHH
T ss_pred             EeecCccccccccccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCcHHH
Confidence            9999999876666666788999999999999899999999999999999999999997552211111111100000    


Q ss_pred             -------------------------hhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          211 -------------------------FINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       211 -------------------------~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                                               ........+.............+.+++.+||+.||.+|| ++|+++
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~  333 (355)
T 2eu9_A          263 IHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEALL  333 (355)
T ss_dssp             HHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             hhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence                                     000000000001122334456899999999999999999 999975

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=6.8e-37  Score=266.04  Aligned_cols=233  Identities=15%  Similarity=0.141  Sum_probs=176.5

Q ss_pred             ccccceeeeccc-CCCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecC------cee
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTS------VSG   65 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~------~~~   65 (257)
                      +.++.||++... ++..+++|...           +.+|++.+.         ++.|+||+++.+.+...+      ..+
T Consensus        36 G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~---------~l~hpnIv~l~~~~~~~~~~~~~~~~~  106 (367)
T 1cm8_A           36 GAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLK---------HMRHENVIGLLDVFTPDETLDDFTDFY  106 (367)
T ss_dssp             ----CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHH---------HCCBTTBCCCSEEECSCSSTTTCCCCE
T ss_pred             cCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHH---------hCCCcCCCCceeeEecCCccccCceEE
Confidence            568899999864 56678888763           123444444         788999999999988653      459


Q ss_pred             EEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC
Q 044568           66 KIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN  145 (257)
Q Consensus        66 lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~  145 (257)
                      +||||+ +++|.+++..   ..+++..+..++.|++.||.|||++   +++||||||+||+++.++.+||+|||+++...
T Consensus       107 lv~e~~-~~~L~~~~~~---~~l~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  179 (367)
T 1cm8_A          107 LVMPFM-GTDLGKLMKH---EKLGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCELKILDFGLARQAD  179 (367)
T ss_dssp             EEEECC-SEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred             EEEecC-CCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCHHHEEEcCCCCEEEEeeecccccc
Confidence            999999 7899999964   5699999999999999999999999   99999999999999999999999999998776


Q ss_pred             CCcccccCCCCccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHh----------hhhh
Q 044568          146 EDFVIDKRDKGYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKC----------FINR  214 (257)
Q Consensus       146 ~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~----------~~~~  214 (257)
                      .......+|+.|+|||.+.+ ..++.++||||+||++|||++|+.||.+.....   .+.......          ....
T Consensus       180 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~---~l~~i~~~~g~~~~~~~~~~~~~  256 (367)
T 1cm8_A          180 SEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLD---QLKEIMKVTGTPPAEFVQRLQSD  256 (367)
T ss_dssp             SSCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH---HHHHHHHHHCCCCHHHHHTCSCH
T ss_pred             cccCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHH---HHHHHHHhcCCCCHHHHHHhhhH
Confidence            66666788999999999887 678999999999999999999999997652211   111111100          0000


Q ss_pred             hhhhhh---cC---C---CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          215 ELNKLV---RG---T---KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       215 ~~~~~~---~~---~---~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .....+   ..   .   .......+.+.+++.+||+.||.+|| ++|+++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~  307 (367)
T 1cm8_A          257 EAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALA  307 (367)
T ss_dssp             HHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             HHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhc
Confidence            001100   00   0   11223457789999999999999999 999976

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=100.00  E-value=6.8e-37  Score=275.21  Aligned_cols=226  Identities=19%  Similarity=0.204  Sum_probs=177.6

Q ss_pred             ccccceeeeccc-CCCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      +.++.||+++.. ++..+++|.+.           +.+|++.+.         ++.|+||+++.+.+...+..++||||+
T Consensus        33 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~---------~l~hpniv~~~~~~~~~~~~~lv~e~~  103 (486)
T 3mwu_A           33 GSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLK---------KLDHPNIMKLFEILEDSSSFYIVGELY  103 (486)
T ss_dssp             CSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHH---------HCCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred             cCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHH---------hCCCCCcCeEEEEEEcCCEEEEEEEcC
Confidence            678999999975 56667887653           234555555         788999999999999999999999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeC---CCCceEEeeecccccCCCC-
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD---EFWTAKILDFGLAKLPNED-  147 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~---~~~~~kl~dfg~~~~~~~~-  147 (257)
                      ++|+|.+.+..  ...+++.++..++.|++.||.|||++   +|+||||||+||+++   .++.+||+|||++...... 
T Consensus       104 ~~~~L~~~~~~--~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~  178 (486)
T 3mwu_A          104 TGGELFDEIIK--RKRFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNT  178 (486)
T ss_dssp             CSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCCC-
T ss_pred             CCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEEECCcCeECCCCC
Confidence            99999999973  46799999999999999999999999   999999999999995   4567999999998754332 


Q ss_pred             -cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCC
Q 044568          148 -FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVD  226 (257)
Q Consensus       148 -~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (257)
                       .....+|+.|+|||.+.+ .++.++||||+|+++|+|++|..||.....   .........     ..   .....+..
T Consensus       179 ~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~---~~~~~~i~~-----~~---~~~~~~~~  246 (486)
T 3mwu_A          179 KMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNE---YDILKRVET-----GK---YAFDLPQW  246 (486)
T ss_dssp             ---CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHH-----TC---CCSCSGGG
T ss_pred             ccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCCH---HHHHHHHHh-----CC---CCCCCccc
Confidence             245578999999999875 589999999999999999999999975521   111111110     00   00000112


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          227 KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       227 ~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ...++.+.+++.+||+.||.+|| +.|+++
T Consensus       247 ~~~s~~~~~li~~~L~~dp~~R~t~~~~l~  276 (486)
T 3mwu_A          247 RTISDDAKDLIRKMLTFHPSLRITATQCLE  276 (486)
T ss_dssp             GGSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             CCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence            23456789999999999999999 999975

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=100.00  E-value=6.7e-37  Score=257.40  Aligned_cols=228  Identities=17%  Similarity=0.196  Sum_probs=177.7

Q ss_pred             ccccceeeecccC-CCCCeeeccc---------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCC
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS---------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRN   73 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~   73 (257)
                      +.++.||+++... +..+++|...         +.+|++.+.         .+.|+|++++.+.+...+..++||||+++
T Consensus        33 G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~---------~l~h~~iv~~~~~~~~~~~~~lv~e~~~~  103 (295)
T 2clq_A           33 GTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHK---------HLKHKNIVQYLGSFSENGFIKIFMEQVPG  103 (295)
T ss_dssp             CSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHH---------TCCCTTBCCEEEEEEETTEEEEEEECCSE
T ss_pred             cCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHH---------hCCCCCEeeEeeEEEeCCcEEEEEEeCCC
Confidence            5689999999644 4556777543         234555554         77899999999999999999999999999


Q ss_pred             CCHHHHHhcc-CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCC-CCceEEeeecccccCCCC---c
Q 044568           74 GSLTDIIFCS-AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE-FWTAKILDFGLAKLPNED---F  148 (257)
Q Consensus        74 gsL~~~l~~~-~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~-~~~~kl~dfg~~~~~~~~---~  148 (257)
                      ++|.+++... ....+++..+..++.|++.||.|||++   +++|+||+|+||+++. ++.++|+|||.+......   .
T Consensus       104 ~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~  180 (295)
T 2clq_A          104 GSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDN---QIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPCT  180 (295)
T ss_dssp             EEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTCCEEECCTTTCEESCC-----
T ss_pred             CCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhC---CEEccCCChhhEEEECCCCCEEEeecccccccCCCCCcc
Confidence            9999999753 234567888999999999999999999   9999999999999987 889999999998754322   2


Q ss_pred             ccccCCCCccCcccccCCC--CCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCC
Q 044568          149 VIDKRDKGYMAPECYKRTP--ISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVD  226 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~~~--~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (257)
                      ....+++.|+|||.+.+..  ++.++||||||+++|+|++|+.||..........    +.        ..........+
T Consensus       181 ~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~----~~--------~~~~~~~~~~~  248 (295)
T 2clq_A          181 ETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAM----FK--------VGMFKVHPEIP  248 (295)
T ss_dssp             CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHH----HH--------HHHHCCCCCCC
T ss_pred             cccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHH----Hh--------hcccccccccc
Confidence            3446788899999987643  7899999999999999999999997442211100    00        00001111334


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          227 KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       227 ~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ...+..+.+++.+||+.||++|| +.|+++
T Consensus       249 ~~~~~~~~~li~~~l~~dp~~Rps~~~ll~  278 (295)
T 2clq_A          249 ESMSAEAKAFILKCFEPDPDKRACANDLLV  278 (295)
T ss_dssp             TTSCHHHHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred             ccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            45567899999999999999999 999975

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=100.00  E-value=2.9e-37  Score=263.92  Aligned_cols=228  Identities=16%  Similarity=0.208  Sum_probs=175.4

Q ss_pred             ccccceeeeccc------CCCCCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEE
Q 044568            4 TKLSNFYRSSFN------ARNSPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~~------~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV   67 (257)
                      +.++.||+++..      ++..+++|...          +.+|++.+.         ++.|+||+++.+.+...+..++|
T Consensus        41 G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~~~~~~~lv  111 (327)
T 2yfx_A           41 GAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIIS---------KFNHQNIVRCIGVSLQSLPRFIL  111 (327)
T ss_dssp             -CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHH---------HCCCTTBCCEEEEECSSSSCEEE
T ss_pred             CCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHh---------hCCCCCCCeEEEEEcCCCCcEEE
Confidence            578999999853      34467888753          223333333         77899999999999999999999


Q ss_pred             EeecCCCCHHHHHhccCC-----CCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeC---CCCceEEeeec
Q 044568           68 ERPVRNGSLTDIIFCSAE-----RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD---EFWTAKILDFG  139 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~~-----~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~---~~~~~kl~dfg  139 (257)
                      |||+++|+|.+++.....     ..+++.++..++.|++.||.|||++   +++|+||+|+||+++   .+..++|+|||
T Consensus       112 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~i~H~dlkp~NIli~~~~~~~~~kl~Dfg  188 (327)
T 2yfx_A          112 MELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAKIGDFG  188 (327)
T ss_dssp             EECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEECCCH
T ss_pred             EecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhC---CeecCcCCHhHEEEecCCCcceEEECccc
Confidence            999999999999985322     4589999999999999999999999   999999999999998   44569999999


Q ss_pred             ccccCCC-----CcccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhh
Q 044568          140 LAKLPNE-----DFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFIN  213 (257)
Q Consensus       140 ~~~~~~~-----~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~  213 (257)
                      ++.....     ......+++.|+|||.+.+..++.++||||||+++|||++ |..||......    ......      
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~----~~~~~~------  258 (327)
T 2yfx_A          189 MARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQ----EVLEFV------  258 (327)
T ss_dssp             HHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH----HHHHHH------
T ss_pred             cccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHH----HHHHHH------
Confidence            8863211     1233456778999999988889999999999999999998 99999754111    010000      


Q ss_pred             hhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          214 RELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                         .. ......+...+..+.+++.+||+.||.+|| +.|+++.|
T Consensus       259 ---~~-~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l  299 (327)
T 2yfx_A          259 ---TS-GGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERI  299 (327)
T ss_dssp             ---HT-TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             ---hc-CCCCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHH
Confidence               00 001123344567899999999999999999 99998754

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=5.7e-37  Score=265.31  Aligned_cols=221  Identities=16%  Similarity=0.127  Sum_probs=174.6

Q ss_pred             ccccceeeecc----cCCCCCeeeccc-------------hhhhHHHHhHhhhccccccc-cCCceeeeceeeeecCcee
Q 044568            4 TKLSNFYRSSF----NARNSPWISRVS-------------WTADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVSG   65 (257)
Q Consensus         4 ~~~~~~y~~~~----~~~~~~~i~~~~-------------~~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~~   65 (257)
                      +.++.||+++.    .++..+++|.+.             +.+|++++.         ++ .|+||+++.+.+...+..+
T Consensus        65 G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~---------~l~~h~~iv~~~~~~~~~~~~~  135 (355)
T 1vzo_A           65 GAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLE---------HIRQSPFLVTLHYAFQTETKLH  135 (355)
T ss_dssp             TTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHH---------HHHTCTTBCCEEEEEEETTEEE
T ss_pred             CCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHH---------HccCCCceeEEEEEEeeCceEE
Confidence            57899999987    366777777542             345566555         55 4999999999999999999


Q ss_pred             EEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC
Q 044568           66 KIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN  145 (257)
Q Consensus        66 lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~  145 (257)
                      +||||+++|+|.+++..  ...+++.++..++.|++.||.|||++   +|+||||||+||+++.++.+||+|||+++...
T Consensus       136 lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~  210 (355)
T 1vzo_A          136 LILDYINGGELFTHLSQ--RERFTEHEVQIYVGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGLSKEFV  210 (355)
T ss_dssp             EEECCCCSCBHHHHHHH--HSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEESCSSEEEECC
T ss_pred             EEeecCCCCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCcEEEeeCCCCeecc
Confidence            99999999999999974  45799999999999999999999999   99999999999999999999999999987543


Q ss_pred             CCc----ccccCCCCccCcccccCC--CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhh
Q 044568          146 EDF----VIDKRDKGYMAPECYKRT--PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKL  219 (257)
Q Consensus       146 ~~~----~~~~~~~~~~aPE~~~~~--~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (257)
                      ...    ....+|+.|+|||.+.+.  .++.++||||||+++|||++|+.||...........+...         .  .
T Consensus       211 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~~~~~---------~--~  279 (355)
T 1vzo_A          211 ADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRR---------I--L  279 (355)
T ss_dssp             GGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHH---------H--H
T ss_pred             cCCCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccchHHHHHHH---------H--h
Confidence            222    334689999999999853  4789999999999999999999999755332221111110         0  0


Q ss_pred             hcCCCCCHHHHHHHHHHHHHcccCCCCCCC
Q 044568          220 VRGTKVDKKNLENLVKVGLWCVQDEPALRP  249 (257)
Q Consensus       220 ~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP  249 (257)
                      ......+......+.+++.+||+.||.+||
T Consensus       280 ~~~~~~~~~~~~~~~~li~~~L~~dP~~R~  309 (355)
T 1vzo_A          280 KSEPPYPQEMSALAKDLIQRLLMKDPKKRL  309 (355)
T ss_dssp             HCCCCCCTTSCHHHHHHHHHHTCSSGGGST
T ss_pred             ccCCCCCcccCHHHHHHHHHHhhhCHHHhc
Confidence            111234455567889999999999999997

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=100.00  E-value=2.5e-37  Score=267.66  Aligned_cols=238  Identities=19%  Similarity=0.204  Sum_probs=176.5

Q ss_pred             ccccceeeecccC-CCCCeeeccch----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +.++.||+++... +..+++|....          .+|++.+         .++.|+||+++.+.+...+..++||||++
T Consensus        44 G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l---------~~l~h~~iv~~~~~~~~~~~~~lv~e~~~  114 (360)
T 3eqc_A           44 GNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVL---------HECNSPYIVGFYGAFYSDGEISICMEHMD  114 (360)
T ss_dssp             CSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGG---------GGCCCTTBCCEEEEEEETTEEEEEECCCT
T ss_pred             CCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHH---------HHCCCCCEEEEeEEEEECCEEEEEEECCC
Confidence            6789999999774 45566665432          2333333         37889999999999999999999999999


Q ss_pred             CCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhh-CCCCCeeeccCCCCceeeCCCCceEEeeecccccCC-CCccc
Q 044568           73 NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHD-ECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN-EDFVI  150 (257)
Q Consensus        73 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~-~~~~~  150 (257)
                      +|+|.+++..  ...+++..+..++.|++.||.|||+ +   +++|+||||+||+++.++.++|+|||++.... .....
T Consensus       115 ~~~L~~~l~~--~~~~~~~~~~~i~~~i~~~l~~lh~~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~  189 (360)
T 3eqc_A          115 GGSLDQVLKK--AGRIPEQILGKVSIAVIKGLTYLREKH---KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANS  189 (360)
T ss_dssp             TCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHHH---CCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHC---
T ss_pred             CCCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHhC---CEEcCCccHHHEEECCCCCEEEEECCCCcccccccccC
Confidence            9999999974  4568999999999999999999998 5   89999999999999999999999999876322 22234


Q ss_pred             ccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHH----------------------HHH
Q 044568          151 DKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTN----------------------WVY  208 (257)
Q Consensus       151 ~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~----------------------~~~  208 (257)
                      ..+|+.|+|||.+.+..++.++||||||+++|||++|+.||..............                      +..
T Consensus       190 ~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (360)
T 3eqc_A          190 FVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLNKFGM  269 (360)
T ss_dssp             -CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHHHHHHC--------------------------
T ss_pred             CCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccCCCCCCCcccCCCccccccc
Confidence            5788999999999999999999999999999999999999975421111000000                      000


Q ss_pred             Hh----hhhhhhhhhhc---CCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          209 KC----FINRELNKLVR---GTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       209 ~~----~~~~~~~~~~~---~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ..    ...........   +..........+.+++.+||+.||++|| ++|+++
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  324 (360)
T 3eqc_A          270 DSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMV  324 (360)
T ss_dssp             ----CCCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred             CCCCcccchhhhhHHhccCCCCCCcccccHHHHHHHHHHhhcChhhCCCHHHHhh
Confidence            00    00000011111   1111223456799999999999999999 999975

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=100.00  E-value=2.7e-37  Score=265.38  Aligned_cols=238  Identities=14%  Similarity=0.112  Sum_probs=158.0

Q ss_pred             ccccceeeeccc-CCCCCeeeccchhhhHHHHhHhhhccccccccCCceeeeceeeee----cCceeEEEeecCCCCHHH
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSWTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL----TSVSGKIERPVRNGSLTD   78 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~----~~~~~lV~E~~~~gsL~~   78 (257)
                      +.++.||++... ++..+++|...-..........    ......|+|++++.+.+..    ....++||||+++|+|.+
T Consensus        40 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~e~~~----~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~gg~L~~  115 (336)
T 3fhr_A           40 GVNGKVLECFHRRTGQKCALKLLYDSPKARQEVDH----HWQASGGPHIVCILDVYENMHHGKRCLLIIMECMEGGELFS  115 (336)
T ss_dssp             ETTEEEEEEEETTTCCEEEEEEEESSHHHHHHHHH----HHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCTTEEHHH
T ss_pred             CCCeEEEEEEECCCCCEEEEEEecCcHHHHHHHHH----HHHhcCCCChHHHHHHHhhccCCCceEEEEEeccCCCCHHH
Confidence            568999999976 5667788876432111110001    1225679999999999886    455899999999999999


Q ss_pred             HHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCC---CCceEEeeecccccCCCC-cccccCC
Q 044568           79 IIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE---FWTAKILDFGLAKLPNED-FVIDKRD  154 (257)
Q Consensus        79 ~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~---~~~~kl~dfg~~~~~~~~-~~~~~~~  154 (257)
                      ++.......+++.++..++.|++.||.|||++   +++||||||+||+++.   ++.+||+|||++...... .....+|
T Consensus       116 ~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~---~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~t  192 (336)
T 3fhr_A          116 RIQERGDQAFTEREAAEIMRDIGTAIQFLHSH---NIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQNALQTPCYT  192 (336)
T ss_dssp             HHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECCCTTCEEC-----------
T ss_pred             HHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEEecCCCceEEEeccccceeccccccccCCCC
Confidence            99865556799999999999999999999999   9999999999999976   455999999998754332 2455678


Q ss_pred             CCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHH
Q 044568          155 KGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLV  234 (257)
Q Consensus       155 ~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  234 (257)
                      +.|+|||.+....++.++||||||+++|+|++|..||..............    ...   ......+.......+..+.
T Consensus       193 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~  265 (336)
T 3fhr_A          193 PYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKR----RIR---LGQYGFPNPEWSEVSEDAK  265 (336)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHHHHSSCCC----------------------------CCCTTTSTTCCHHHH
T ss_pred             cCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhhHHH----hhh---ccccccCchhhccCCHHHH
Confidence            899999999888889999999999999999999999975532211000000    000   0000001111234567789


Q ss_pred             HHHHHcccCCCCCCC-hHHHHH
Q 044568          235 KVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       235 ~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +++.+||+.||++|| ++|+++
T Consensus       266 ~li~~~L~~dP~~Rpt~~ell~  287 (336)
T 3fhr_A          266 QLIRLLLKTDPTERLTITQFMN  287 (336)
T ss_dssp             HHHHHHSCSSGGGSCCHHHHHH
T ss_pred             HHHHHHCCCChhHCcCHHHHhc
Confidence            999999999999999 999986

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=100.00  E-value=3.2e-37  Score=262.24  Aligned_cols=225  Identities=20%  Similarity=0.270  Sum_probs=173.1

Q ss_pred             ccccceeeecccCCCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +.++.||+++...  .+++|...           +.+|++.+.         ++.|+|++++.+.+...+..++||||++
T Consensus        44 G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~---------~l~h~~iv~~~~~~~~~~~~~iv~e~~~  112 (319)
T 2y4i_B           44 GRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYR---------QTRHENVVLFMGACMSPPHLAIITSLCK  112 (319)
T ss_dssp             SSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGT---------TCCCTTBCCCCEEEECSSCEEEECBCCC
T ss_pred             CCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHh---------cCCCCCEeEEEEEEecCCceEEEeeccc
Confidence            5788999998754  46666543           334555554         7889999999999999999999999999


Q ss_pred             CCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC-------
Q 044568           73 NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN-------  145 (257)
Q Consensus        73 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~-------  145 (257)
                      +++|.+++.. ....+++.++..++.|++.||.|||++   +++|+||+|+||+++ ++.++|+|||++....       
T Consensus       113 ~~~L~~~l~~-~~~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~~~~~~  187 (319)
T 2y4i_B          113 GRTLYSVVRD-AKIVLDVNKTRQIAQEIVKGMGYLHAK---GILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQAGRR  187 (319)
T ss_dssp             SEEHHHHTTS-SCCCCCSHHHHHHHHHHHHHHHHHHHT---TCCCCCCCSTTEEEC---CCEECCCSCCC----------
T ss_pred             CCcHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHhC---CccccCCChhhEEEe-CCCEEEeecCCcccccccccccc
Confidence            9999999975 455799999999999999999999999   999999999999998 5699999999876432       


Q ss_pred             -CCcccccCCCCccCcccccC---------CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhh
Q 044568          146 -EDFVIDKRDKGYMAPECYKR---------TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRE  215 (257)
Q Consensus       146 -~~~~~~~~~~~~~aPE~~~~---------~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~  215 (257)
                       .......+++.|+|||.+..         ..++.++||||||+++|||++|..||.....   ......          
T Consensus       188 ~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~---~~~~~~----------  254 (319)
T 2y4i_B          188 EDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPA---EAIIWQ----------  254 (319)
T ss_dssp             CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCH---HHHHHH----------
T ss_pred             ccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCH---HHHHHH----------
Confidence             11233457788999999864         3578899999999999999999999975421   111100          


Q ss_pred             hhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          216 LNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       216 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ......+.......+..+.+++.+||+.||++|| +.|+++.|
T Consensus       255 ~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l  297 (319)
T 2y4i_B          255 MGTGMKPNLSQIGMGKEISDILLFCWAFEQEERPTFTKLMDML  297 (319)
T ss_dssp             HHTTCCCCCCCSSCCTTHHHHHHHHHCSSTTTSCCHHHHHHHH
T ss_pred             hccCCCCCCCcCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHH
Confidence            0111111111223446789999999999999999 99998864

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=100.00  E-value=2.2e-37  Score=262.81  Aligned_cols=229  Identities=19%  Similarity=0.207  Sum_probs=175.6

Q ss_pred             ccccceeeecc------cCCCCCeeeccch----------hhhHHHHhHhhhccccccc-cCCceeeeceeeeecC-cee
Q 044568            4 TKLSNFYRSSF------NARNSPWISRVSW----------TADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTS-VSG   65 (257)
Q Consensus         4 ~~~~~~y~~~~------~~~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~-~~~   65 (257)
                      +.++.||+++.      .++..+++|....          .+|++.+.         ++ .|+|++++.+.+...+ ..+
T Consensus        38 G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~---------~l~~hp~iv~~~~~~~~~~~~~~  108 (316)
T 2xir_A           38 GAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILI---------HIGHHLNVVNLLGACTKPGGPLM  108 (316)
T ss_dssp             CSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHH---------HHCCCTTBCCEEEEECCTTSCCE
T ss_pred             CCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHH---------hcccCCCeeeEEEEEecCCCceE
Confidence            56889999974      3445567776432          23343333         55 5899999999987754 589


Q ss_pred             EEEeecCCCCHHHHHhccCC--------------CCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCC
Q 044568           66 KIERPVRNGSLTDIIFCSAE--------------RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW  131 (257)
Q Consensus        66 lV~E~~~~gsL~~~l~~~~~--------------~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~  131 (257)
                      +||||+++|+|.+++.....              ..+++..+..++.|++.||.|||++   +++|+||||+||+++.++
T Consensus       109 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~dikp~Nil~~~~~  185 (316)
T 2xir_A          109 VIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKN  185 (316)
T ss_dssp             EEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGG
T ss_pred             EEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhC---CcccccCccceEEECCCC
Confidence            99999999999999985321              1288999999999999999999999   999999999999999999


Q ss_pred             ceEEeeecccccCCCCc-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHH
Q 044568          132 TAKILDFGLAKLPNEDF-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTN  205 (257)
Q Consensus       132 ~~kl~dfg~~~~~~~~~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~  205 (257)
                      .+||+|||++.......     ....+|+.|+|||.+.+..++.++||||||+++|||++ |..||.........  ...
T Consensus       186 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~--~~~  263 (316)
T 2xir_A          186 VVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEF--CRR  263 (316)
T ss_dssp             CEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHHH--HHH
T ss_pred             CEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcccchhHHH--HHH
Confidence            99999999987543221     23355678999999998889999999999999999998 99999765322211  000


Q ss_pred             HHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          206 WVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      .          ... .....+....+.+.+++.+||+.||.+|| +.|+++.|
T Consensus       264 ~----------~~~-~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L  305 (316)
T 2xir_A          264 L----------KEG-TRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHL  305 (316)
T ss_dssp             H----------HHT-CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             h----------ccC-ccCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence            0          000 01122334557799999999999999999 99998764

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=100.00  E-value=4.3e-37  Score=276.29  Aligned_cols=226  Identities=19%  Similarity=0.180  Sum_probs=179.5

Q ss_pred             ccccceeeeccc-CCCCCeeeccc------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||+++.. ++..+++|...            +.+|++.+.         ++.|+||+++.+.+...+..++||||
T Consensus        37 G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~---------~l~hpniv~~~~~~~~~~~~~lv~e~  107 (484)
T 3nyv_A           37 GSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLK---------QLDHPNIMKLYEFFEDKGYFYLVGEV  107 (484)
T ss_dssp             ETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHT---------TCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             CCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHH---------hCCCCCCCcEEEEEEeCCEEEEEEec
Confidence            568899999976 56667787642            234555555         78899999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceee---CCCCceEEeeecccccCCC-
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEFWTAKILDFGLAKLPNE-  146 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~---~~~~~~kl~dfg~~~~~~~-  146 (257)
                      +.+|+|.+.+.  ....+++.++..++.|++.||.|||++   +|+||||||+||++   +.++.+||+|||++..... 
T Consensus       108 ~~~~~L~~~~~--~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~  182 (484)
T 3nyv_A          108 YTGGELFDEII--SRKRFSEVDAARIIRQVLSGITYMHKN---KIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEAS  182 (484)
T ss_dssp             CCSCBHHHHHH--TCSCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBCCC
T ss_pred             CCCCCHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEcccc
Confidence            99999999997  556799999999999999999999999   99999999999999   5678999999999875433 


Q ss_pred             -CcccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCC
Q 044568          147 -DFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKV  225 (257)
Q Consensus       147 -~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (257)
                       ......+|+.|+|||.+.+ .++.++||||+|+++|+|++|..||.....   .........     ..   ...+.+.
T Consensus       183 ~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~---~~~~~~i~~-----~~---~~~~~~~  250 (484)
T 3nyv_A          183 KKMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGANE---YDILKKVEK-----GK---YTFELPQ  250 (484)
T ss_dssp             CSHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHH-----CC---CCCCSGG
T ss_pred             cccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCCH---HHHHHHHHc-----CC---CCCCCcc
Confidence             2345678999999999876 689999999999999999999999975521   111111100     00   0000011


Q ss_pred             CHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          226 DKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       226 ~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ....++.+.+++.+||+.||.+|| +.|+++
T Consensus       251 ~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~  281 (484)
T 3nyv_A          251 WKKVSESAKDLIRKMLTYVPSMRISARDALD  281 (484)
T ss_dssp             GGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             cccCCHHHHHHHHHHCCCChhHCcCHHHHhh
Confidence            233457789999999999999999 999975

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=2e-37  Score=271.13  Aligned_cols=233  Identities=18%  Similarity=0.166  Sum_probs=167.9

Q ss_pred             ccccceeeecc-cCCCCCeeeccc--h---------hhhHHHHhHhhhcccccccc-CCceeeeceeeeecC--ceeEEE
Q 044568            4 TKLSNFYRSSF-NARNSPWISRVS--W---------TADIEVLSVAMRGSKCTRIR-GGLLLNVPVRAKLTS--VSGKIE   68 (257)
Q Consensus         4 ~~~~~~y~~~~-~~~~~~~i~~~~--~---------~~~~~~~~~~~~~~~~~~~~-h~~i~~~~~~~~~~~--~~~lV~   68 (257)
                      +.++.||++.. .+++.+++|.+.  +         .+|++.+.         ++. |+||+++.+.+...+  ..++||
T Consensus        20 G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~---------~l~~h~niv~l~~~~~~~~~~~~~lv~   90 (388)
T 3oz6_A           20 GAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILT---------ELSGHENIVNLLNVLRADNDRDVYLVF   90 (388)
T ss_dssp             ----CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHH---------HTTTCTTBCCEEEEEECTTSSCEEEEE
T ss_pred             CCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHH---------hccCCCCCCeeeeEEecCCCCEEEEEe
Confidence            57899999985 456667888652  1         22333333         565 999999999987544  689999


Q ss_pred             eecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC--
Q 044568           69 RPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE--  146 (257)
Q Consensus        69 E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~--  146 (257)
                      |||+ |+|.+++..   ..+++..+..++.|++.||.|||++   +|+||||||+||+++.++.+||+|||+++....  
T Consensus        91 e~~~-~~L~~~~~~---~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~  163 (388)
T 3oz6_A           91 DYME-TDLHAVIRA---NILEPVHKQYVVYQLIKVIKYLHSG---GLLHRDMKPSNILLNAECHVKVADFGLSRSFVNIR  163 (388)
T ss_dssp             ECCS-EEHHHHHHH---TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEESSSCC
T ss_pred             cccC-cCHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHeEEcCCCCEEecCCcccccccccc
Confidence            9997 699999964   4789999999999999999999999   999999999999999999999999999875322  


Q ss_pred             ----------------------CcccccCCCCccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHH
Q 044568          147 ----------------------DFVIDKRDKGYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIIL  203 (257)
Q Consensus       147 ----------------------~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~  203 (257)
                                            ......+|+.|+|||.+.+ ..++.++||||+||++|||++|+.||.+.....   .+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~---~~  240 (388)
T 3oz6_A          164 RVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTMN---QL  240 (388)
T ss_dssp             CCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH---HH
T ss_pred             cccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCCHHH---HH
Confidence                                  1133468888999999986 568999999999999999999999997652211   11


Q ss_pred             HHHHHHhhhhh--hh---------------------------------hhhhcCCCCCHHHHHHHHHHHHHcccCCCCCC
Q 044568          204 TNWVYKCFINR--EL---------------------------------NKLVRGTKVDKKNLENLVKVGLWCVQDEPALR  248 (257)
Q Consensus       204 ~~~~~~~~~~~--~~---------------------------------~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~R  248 (257)
                      ...........  .+                                 ..............+.+.+|+.+||+.||++|
T Consensus       241 ~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R  320 (388)
T 3oz6_A          241 ERIIGVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFNPNKR  320 (388)
T ss_dssp             HHHHHHHCCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCSSGGGS
T ss_pred             HHHHHhcCCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhhccCcccC
Confidence            11110000000  00                                 00000000011234678999999999999999


Q ss_pred             C-hHHHHH
Q 044568          249 P-MKCAVM  255 (257)
Q Consensus       249 P-~~ei~~  255 (257)
                      | ++|+++
T Consensus       321 ~t~~e~l~  328 (388)
T 3oz6_A          321 ISANDALK  328 (388)
T ss_dssp             CCHHHHTT
T ss_pred             CCHHHHhC
Confidence            9 999975

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.2e-36  Score=262.31  Aligned_cols=235  Identities=20%  Similarity=0.156  Sum_probs=178.3

Q ss_pred             ccccceeeecccC-CCCCeeeccch--------------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEE
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW--------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIE   68 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~--------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~   68 (257)
                      +.++.||+++... +..+++|....              .+|++.+.         ++.|+||+++.+.+...+..++||
T Consensus        21 G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~~~~~~~lv~   91 (346)
T 1ua2_A           21 GQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQ---------ELSHPNIIGLLDAFGHKSNISLVF   91 (346)
T ss_dssp             ETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHH---------HCCCTTBCCEEEEECCTTCCEEEE
T ss_pred             cCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHh---------hCCCCCCCeEEEEEeeCCceEEEE
Confidence            5689999999765 56677876542              24444444         778999999999999999999999


Q ss_pred             eecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC-
Q 044568           69 RPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED-  147 (257)
Q Consensus        69 E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~-  147 (257)
                      ||+++ +|.+++.. ....+++.++..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++...... 
T Consensus        92 e~~~~-~l~~~~~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~  166 (346)
T 1ua2_A           92 DFMET-DLEVIIKD-NSLVLTPSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPN  166 (346)
T ss_dssp             ECCSE-EHHHHHTT-CCSSCCSSHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCC
T ss_pred             EcCCC-CHHHHHHh-cCcCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCHHHEEEcCCCCEEEEecccceeccCCc
Confidence            99985 89999975 456789999999999999999999999   9999999999999999999999999998764322 


Q ss_pred             --cccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhh--hhhhhhhc-
Q 044568          148 --FVIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFIN--RELNKLVR-  221 (257)
Q Consensus       148 --~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-  221 (257)
                        .....+|+.|+|||.+.+. .++.++||||||+++|||++|..||.....   ...+..........  ..+..... 
T Consensus       167 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~  243 (346)
T 1ua2_A          167 RAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSD---LDQLTRIFETLGTPTEEQWPDMCSL  243 (346)
T ss_dssp             CCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHHHCCCCTTTSSSTTSS
T ss_pred             ccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCH---HHHHHHHHHHcCCCChhhhhhhccC
Confidence              2445778899999998764 478999999999999999999999976521   11111111110000  00000000 


Q ss_pred             -----CC---CC-----CHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          222 -----GT---KV-----DKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       222 -----~~---~~-----~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                           ..   ..     .......+.+++.+||+.||.+|| ++|+++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  291 (346)
T 1ua2_A          244 PDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALK  291 (346)
T ss_dssp             TTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred             cccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhc
Confidence                 00   00     123347899999999999999999 999986

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=100.00  E-value=1.2e-36  Score=259.42  Aligned_cols=227  Identities=16%  Similarity=0.177  Sum_probs=175.0

Q ss_pred             ccccceeeecccC-CCCCeeeccc-----------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCcee
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS-----------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSG   65 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~-----------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~   65 (257)
                      +.++.||++.... +..+++|...                 +.+|++.+.         ++.|+||+++.+.+...+ .+
T Consensus        21 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~i~~~~~~~~~~~-~~   90 (322)
T 2ycf_A           21 GACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILK---------KLNHPCIIKIKNFFDAED-YY   90 (322)
T ss_dssp             CSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHH---------HCCCTTBCCEEEEEESSS-EE
T ss_pred             CCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHH---------hCCCCCCceEeeEEcCCc-eE
Confidence            5789999998654 4567777542                 345666665         778999999999886654 89


Q ss_pred             EEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCc---eEEeeecccc
Q 044568           66 KIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT---AKILDFGLAK  142 (257)
Q Consensus        66 lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~---~kl~dfg~~~  142 (257)
                      +||||+++|+|.+++.  ....+++.++..++.|++.||.|||++   +++|+||+|+||+++.++.   +||+|||++.
T Consensus        91 lv~e~~~~~~L~~~~~--~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~  165 (322)
T 2ycf_A           91 IVLELMEGGELFDKVV--GNKRLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKITDFGHSK  165 (322)
T ss_dssp             EEEECCTTEETHHHHS--TTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSSSCCEEECCCTTCE
T ss_pred             EEEecCCCCcHHHHHh--ccCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEecCCCCCeEEEccCccce
Confidence            9999999999999997  556799999999999999999999999   9999999999999987654   9999999988


Q ss_pred             cCCCCc--ccccCCCCccCccccc---CCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhh
Q 044568          143 LPNEDF--VIDKRDKGYMAPECYK---RTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELN  217 (257)
Q Consensus       143 ~~~~~~--~~~~~~~~~~aPE~~~---~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (257)
                      ......  ....+|+.|+|||.+.   ...++.++||||||+++|+|++|..||.........   ......    ... 
T Consensus       166 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~---~~~~~~----~~~-  237 (322)
T 2ycf_A          166 ILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSL---KDQITS----GKY-  237 (322)
T ss_dssp             ECCCCHHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSCH---HHHHHH----TCC-
T ss_pred             ecccccccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHHHH---HHHHHh----Ccc-
Confidence            654432  3446889999999974   456889999999999999999999999755332211   000000    000 


Q ss_pred             hhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          218 KLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       218 ~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ....  ......++.+.+++.+||+.||++|| ++|+++
T Consensus       238 ~~~~--~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~  274 (322)
T 2ycf_A          238 NFIP--EVWAEVSEKALDLVKKLLVVDPKARFTTEEALR  274 (322)
T ss_dssp             CCCH--HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             ccCc--hhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence            0000  00112346789999999999999999 999975

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=100.00  E-value=4.1e-36  Score=256.68  Aligned_cols=232  Identities=15%  Similarity=0.191  Sum_probs=176.6

Q ss_pred             ccccceeeecc-cCCCCCeeeccc------hhhhHHHHhHhhhcccccccc-CCceeeeceeeee--cCceeEEEeecCC
Q 044568            4 TKLSNFYRSSF-NARNSPWISRVS------WTADIEVLSVAMRGSKCTRIR-GGLLLNVPVRAKL--TSVSGKIERPVRN   73 (257)
Q Consensus         4 ~~~~~~y~~~~-~~~~~~~i~~~~------~~~~~~~~~~~~~~~~~~~~~-h~~i~~~~~~~~~--~~~~~lV~E~~~~   73 (257)
                      +.++.||++.. .+++.+++|...      +.+|++.+.         ++. |+|++++.+.+..  ....++||||+++
T Consensus        47 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~E~~~l~---------~l~~~~~i~~~~~~~~~~~~~~~~lv~e~~~~  117 (330)
T 3nsz_A           47 GKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILE---------NLRGGPNIITLADIVKDPVSRTPALVFEHVNN  117 (330)
T ss_dssp             CSSEEEEEEEETTTCCEEEEEEECSCCHHHHHHHHHHHH---------HHTTSTTBCCEEEEEECTTTCCEEEEEECCCC
T ss_pred             cCCeEEEEEEECCCCcEEEEEEecccchHHHHHHHHHHH---------HcCCCCCEEEeeeeeccCCCCceEEEEeccCc
Confidence            57899999985 556677777654      456666665         665 9999999999987  6678999999999


Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCC-ceEEeeecccccCCC--Cccc
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW-TAKILDFGLAKLPNE--DFVI  150 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~-~~kl~dfg~~~~~~~--~~~~  150 (257)
                      ++|.+++..     +++.++..++.|++.||.|||++   +++||||||+||+++.++ .+||+|||++.....  ....
T Consensus       118 ~~l~~~~~~-----~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~~  189 (330)
T 3nsz_A          118 TDFKQLYQT-----LTDYDIRFYMYEILKALDYCHSM---GIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNV  189 (330)
T ss_dssp             CCHHHHGGG-----CCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCCTTCEECCTTCCCCS
T ss_pred             hhHHHHHHh-----CCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCCCcccc
Confidence            999999853     89999999999999999999999   999999999999999766 899999999875432  2345


Q ss_pred             ccCCCCccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhh-------------
Q 044568          151 DKRDKGYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINREL-------------  216 (257)
Q Consensus       151 ~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~-------------  216 (257)
                      ..++..|+|||.+.+ ..++.++||||||+++|||++|+.||........  .+....... .....             
T Consensus       190 ~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~--~l~~~~~~~-~~~~~~~~~~~~~~~~~~  266 (330)
T 3nsz_A          190 RVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYD--QLVRIAKVL-GTEDLYDYIDKYNIELDP  266 (330)
T ss_dssp             CCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHH--HHHHHHHHH-CHHHHHHHHHHTTCCCCT
T ss_pred             ccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHH--HHHHHHHhc-CCchhhhHHHHhcccccc
Confidence            567888999999887 5689999999999999999999999964422211  111111110 00111             


Q ss_pred             --hhhhcCC-----------CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          217 --NKLVRGT-----------KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       217 --~~~~~~~-----------~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                        .......           .......+.+.+++.+||+.||++|| ++|+++
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~  319 (330)
T 3nsz_A          267 RFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME  319 (330)
T ss_dssp             HHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             chhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence              0111000           11122457899999999999999999 999986

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=100.00  E-value=3.6e-37  Score=263.81  Aligned_cols=234  Identities=16%  Similarity=0.139  Sum_probs=170.8

Q ss_pred             ccccceeeeccc-CCCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      +.++.||++... +++.+++|...           +.+|++.+.         ++.|+||+++.+.+...+..++||||+
T Consensus        45 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~~~~~~~lv~e~~  115 (329)
T 3gbz_A           45 GTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLK---------ELQHRNIIELKSVIHHNHRLHLIFEYA  115 (329)
T ss_dssp             CSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGG---------GCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             cCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHH---------HcCCCCcceEEEEEecCCEEEEEEecC
Confidence            578999999844 56667788654           234444444         788999999999999999999999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceee-----CCCCceEEeeecccccCCC
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM-----DEFWTAKILDFGLAKLPNE  146 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~-----~~~~~~kl~dfg~~~~~~~  146 (257)
                      + |+|.+++.  ....+++.++..++.|++.||.|||++   +|+||||||+||++     +..+.+||+|||++.....
T Consensus       116 ~-~~L~~~~~--~~~~~~~~~~~~i~~ql~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~~  189 (329)
T 3gbz_A          116 E-NDLKKYMD--KNPDVSMRVIKSFLYQLINGVNFCHSR---RCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGI  189 (329)
T ss_dssp             S-EEHHHHHH--HCTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEC-----CCEEEECCTTHHHHHC-
T ss_pred             C-CCHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHHHhC---CEECCCCCHHHEEEecCCCCccceEEECcCCCccccCC
Confidence            7 59999997  445699999999999999999999999   99999999999999     4555699999999875332


Q ss_pred             ---CcccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhh--hhhhhh-
Q 044568          147 ---DFVIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFIN--RELNKL-  219 (257)
Q Consensus       147 ---~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-  219 (257)
                         ......+|+.|+|||.+.+. .++.++||||||+++|||++|..||.......   ............  ...... 
T Consensus       190 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  266 (329)
T 3gbz_A          190 PIRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEID---QLFKIFEVLGLPDDTTWPGVT  266 (329)
T ss_dssp             ----------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HHHHHHHHHCCCCTTTSTTGG
T ss_pred             cccccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHH---HHHHHHHHhCCCchhhhhhhh
Confidence               22445678899999999875 48999999999999999999999997552211   111111110000  000000 


Q ss_pred             --------hcC-C------CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          220 --------VRG-T------KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       220 --------~~~-~------~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                              ... .      ..+....+.+.+++.+||+.||++|| ++|+++
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  318 (329)
T 3gbz_A          267 ALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALE  318 (329)
T ss_dssp             GSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             hhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhC
Confidence                    000 0      00111346789999999999999999 999986

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=100.00  E-value=2.4e-36  Score=257.63  Aligned_cols=239  Identities=17%  Similarity=0.149  Sum_probs=180.2

Q ss_pred             ccccceeeeccc--CCCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeee-----ecCcee
Q 044568            4 TKLSNFYRSSFN--ARNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAK-----LTSVSG   65 (257)
Q Consensus         4 ~~~~~~y~~~~~--~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~-----~~~~~~   65 (257)
                      +.++.||++...  ++..+++|...           +.+|++.+.      .+..+.|+||+++.+.+.     .....+
T Consensus        22 G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~------~l~~~~h~~i~~~~~~~~~~~~~~~~~~~   95 (326)
T 1blx_A           22 GAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLR------HLETFEHPNVVRLFDVCTVSRTDRETKLT   95 (326)
T ss_dssp             ETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHH------HHHHTCCTTBCCEEEEEEEEECSSEEEEE
T ss_pred             cccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHH------hhhccCCCCeEeeeeeeeecccCCCceEE
Confidence            568899999873  45567777542           334555554      233558999999999887     567889


Q ss_pred             EEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC
Q 044568           66 KIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN  145 (257)
Q Consensus        66 lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~  145 (257)
                      +||||++ |+|.+++.......+++.++..++.|++.||.|||++   +++|+||+|+||+++.++.+||+|||.+....
T Consensus        96 lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---gi~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~  171 (326)
T 1blx_A           96 LVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLADFGLARIYS  171 (326)
T ss_dssp             EEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECSCCSCCCCC
T ss_pred             EEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCCHHHeEEcCCCCEEEecCccccccc
Confidence            9999998 6999999865556799999999999999999999999   99999999999999999999999999987654


Q ss_pred             CC--cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhh--hhhh----
Q 044568          146 ED--FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFIN--RELN----  217 (257)
Q Consensus       146 ~~--~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~--~~~~----  217 (257)
                      ..  .....++..|+|||.+.+..++.++||||||+++|||++|+.||......   .............  ..+.    
T Consensus       172 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~  248 (326)
T 1blx_A          172 FQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDV---DQLGKILDVIGLPGEEDWPRDVA  248 (326)
T ss_dssp             GGGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH---HHHHHHHHHHCCCCGGGSCTTCS
T ss_pred             CCCCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHH---HHHHHHHHHcCCCCcccCccccc
Confidence            32  23456788999999999888999999999999999999999999755211   1111111100000  0000    


Q ss_pred             ---hhhcC------CCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          218 ---KLVRG------TKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       218 ---~~~~~------~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                         .....      .......+..+.+++.+||+.||++|| +.|+++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  296 (326)
T 1blx_A          249 LPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS  296 (326)
T ss_dssp             SCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             cchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence               00000      012233457789999999999999999 999975

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=100.00  E-value=8e-37  Score=260.69  Aligned_cols=227  Identities=18%  Similarity=0.156  Sum_probs=171.5

Q ss_pred             ccccceeeeccc-CCCCCeeeccc--------hhhhHHHHhHhhhccccccc-cCCceeeeceeeee------cCceeEE
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS--------WTADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKL------TSVSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~------~~~~~lV   67 (257)
                      +.++.||+++.. ++..+++|...        +.+|++.+.         ++ .|+|++++.+.+..      .+..++|
T Consensus        35 G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~---------~l~~h~~i~~~~~~~~~~~~~~~~~~~~lv  105 (326)
T 2x7f_A           35 GTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLK---------KYSHHRNIATYYGAFIKKNPPGMDDQLWLV  105 (326)
T ss_dssp             ETTEEEEEEEETTTCCEEEEEEEECCSSTTHHHHHHHHHHH---------HHCCSTTBCCEEEEEEECC--CCCCEEEEE
T ss_pred             CCCEEEEEEEECCCCCeEEEEEEecCcccHHHHHHHHHHHH---------hccCCCCeeeeeeEEeeccCccccceEEEE
Confidence            568899999974 55667777653        234444444         54 69999999999887      4678999


Q ss_pred             EeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC
Q 044568           68 ERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED  147 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~  147 (257)
                      |||+++|+|.+++.......+++..+..++.|++.||.|||++   +++|+||+|+||+++.++.+||+|||++......
T Consensus       106 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~  182 (326)
T 2x7f_A          106 MEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQH---KVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRT  182 (326)
T ss_dssp             EECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEEECCCTTTC-----
T ss_pred             EEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCcHHHEEEcCCCCEEEeeCcCceecCcC
Confidence            9999999999999864456799999999999999999999999   9999999999999999999999999998754322


Q ss_pred             ---cccccCCCCccCccccc-----CCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhh
Q 044568          148 ---FVIDKRDKGYMAPECYK-----RTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKL  219 (257)
Q Consensus       148 ---~~~~~~~~~~~aPE~~~-----~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (257)
                         .....+++.|+|||.+.     ...++.++||||||+++|+|++|..||.......   ....          ....
T Consensus       183 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~---~~~~----------~~~~  249 (326)
T 2x7f_A          183 VGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMR---ALFL----------IPRN  249 (326)
T ss_dssp             --------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHHH---HHHH----------HHHS
T ss_pred             ccccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHHH---HHHH----------hhcC
Confidence               23446788899999987     4568899999999999999999999996442110   0000          0000


Q ss_pred             hcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          220 VRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       220 ~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ..+...+...+..+.+++.+||+.||.+|| ++|+++
T Consensus       250 ~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  286 (326)
T 2x7f_A          250 PAPRLKSKKWSKKFQSFIESCLVKNHSQRPATEQLMK  286 (326)
T ss_dssp             CCCCCSCSCSCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             ccccCCccccCHHHHHHHHHHhccChhhCCCHHHHhh
Confidence            011122233456789999999999999999 999975

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=100.00  E-value=2.9e-36  Score=260.11  Aligned_cols=238  Identities=17%  Similarity=0.182  Sum_probs=174.2

Q ss_pred             ccccceeeecc-cCCCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeee--------cCc
Q 044568            4 TKLSNFYRSSF-NARNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL--------TSV   63 (257)
Q Consensus         4 ~~~~~~y~~~~-~~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~--------~~~   63 (257)
                      +.++.||+++. .++..+++|...           +.+|++.+.         ++.|+|++++.+.+..        .+.
T Consensus        28 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~~~~~~~~~~~~~   98 (351)
T 3mi9_A           28 GTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQ---------LLKHENVVNLIEICRTKASPYNRCKGS   98 (351)
T ss_dssp             CSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHH---------HCCCTTBCCEEEEEEEC--------CE
T ss_pred             CCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHH---------hccCCCcccHhheeeccccccccCCce
Confidence            57899999997 456677887542           235555555         7789999999999887        346


Q ss_pred             eeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeeccccc
Q 044568           64 SGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKL  143 (257)
Q Consensus        64 ~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~  143 (257)
                      .++||||+++ +|.+.+.. ....+++.++..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++..
T Consensus        99 ~~lv~e~~~~-~l~~~l~~-~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~  173 (351)
T 3mi9_A           99 IYLVFDFCEH-DLAGLLSN-VLVKFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVLITRDGVLKLADFGLARA  173 (351)
T ss_dssp             EEEEEECCSE-EHHHHHHC-TTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             EEEEEeccCC-CHHHHHhh-ccCCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCHHHEEEcCCCCEEEccchhccc
Confidence            8999999975 88888875 456799999999999999999999999   999999999999999999999999999875


Q ss_pred             CCC-------CcccccCCCCccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHh-----
Q 044568          144 PNE-------DFVIDKRDKGYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKC-----  210 (257)
Q Consensus       144 ~~~-------~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~-----  210 (257)
                      ...       ......+|+.|+|||.+.+ ..++.++||||||+++|||++|..||...........+.......     
T Consensus       174 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~  253 (351)
T 3mi9_A          174 FSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVW  253 (351)
T ss_dssp             CCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTS
T ss_pred             ccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhhc
Confidence            431       1234467888999999876 457999999999999999999999998652211111111100000     


Q ss_pred             --hhhhhhhhh---hcCCCCC-HH------HHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          211 --FINRELNKL---VRGTKVD-KK------NLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       211 --~~~~~~~~~---~~~~~~~-~~------~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                        .........   ....... .+      ..+.+.+++.+||+.||++|| ++|+++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  311 (351)
T 3mi9_A          254 PNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALN  311 (351)
T ss_dssp             TTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             cccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhC
Confidence              000000000   0000000 00      135688999999999999999 999975

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=100.00  E-value=3e-37  Score=260.34  Aligned_cols=244  Identities=18%  Similarity=0.182  Sum_probs=171.4

Q ss_pred             ccccceeeeccc-CCCCCeeeccchhhhHHHH-hHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHHHh
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSWTADIEVL-SVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIF   81 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~   81 (257)
                      +.++.||++... +++.+++|........+.. .+...-..+.++.|+||+++.+.+...+..++||||+++++|.+++.
T Consensus        26 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~  105 (303)
T 2vwi_A           26 GATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVMKLLSGGSVLDIIK  105 (303)
T ss_dssp             --CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEEEEECCTTCBHHHHHH
T ss_pred             ccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEEehhccCCchHHHHH
Confidence            568899999865 5667788876532111100 01111113447889999999999999999999999999999999996


Q ss_pred             cc------CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC--------
Q 044568           82 CS------AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED--------  147 (257)
Q Consensus        82 ~~------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~--------  147 (257)
                      ..      ....+++..+..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||.+......        
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~  182 (303)
T 2vwi_A          106 HIVAKGEHKSGVLDESTIATILREVLEGLEYLHKN---GQIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKV  182 (303)
T ss_dssp             HHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEEECCCHHHHHCC----------
T ss_pred             HHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCCChhhEEEcCCCCEEEEeccchheeccCCCccchhh
Confidence            31      345689999999999999999999999   9999999999999999999999999988654321        


Q ss_pred             cccccCCCCccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCC
Q 044568          148 FVIDKRDKGYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVD  226 (257)
Q Consensus       148 ~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (257)
                      .....+|+.|+|||.+.. ..++.++||||||+++|||++|+.||........  ....  ... ...............
T Consensus       183 ~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~--~~~~--~~~-~~~~~~~~~~~~~~~  257 (303)
T 2vwi_A          183 RKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKV--LMLT--LQN-DPPSLETGVQDKEML  257 (303)
T ss_dssp             -----CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGH--HHHH--HTS-SCCCTTC-----CCC
T ss_pred             hcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhH--HHHH--hcc-CCCccccccccchhh
Confidence            133467888999999875 4688999999999999999999999975522111  0000  000 000000001111122


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          227 KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       227 ~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ...+..+.+++.+||+.||.+|| ++|+++
T Consensus       258 ~~~~~~~~~li~~~l~~dp~~Rps~~~ll~  287 (303)
T 2vwi_A          258 KKYGKSFRKMISLCLQKDPEKRPTAAELLR  287 (303)
T ss_dssp             CCCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             hhhhHHHHHHHHHHccCChhhCcCHHHHhh
Confidence            33456789999999999999999 999986

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=100.00  E-value=1.3e-36  Score=273.94  Aligned_cols=226  Identities=19%  Similarity=0.165  Sum_probs=173.9

Q ss_pred             ccccceeeeccc-CCCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      +.++.||+++.. ++..+++|.+.           +.+|++.+.         .+.|+||+++.+.+...+..++|||||
T Consensus        48 G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~---------~l~hpniv~~~~~~~~~~~~~lv~e~~  118 (494)
T 3lij_A           48 GAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLK---------LLDHPNIMKLYDFFEDKRNYYLVMECY  118 (494)
T ss_dssp             C---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHT---------TCCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             CCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHH---------hCCCCCCCeEEEEEEeCCEEEEEEecC
Confidence            578999999976 44556776543           234555555         788999999999999999999999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCC---CCceEEeeecccccCCC--
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE---FWTAKILDFGLAKLPNE--  146 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~---~~~~kl~dfg~~~~~~~--  146 (257)
                      ++|+|.+.+.  ....+++.++..++.|++.||.|||++   +|+||||||+||+++.   ++.+||+|||++.....  
T Consensus       119 ~~g~L~~~~~--~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~~  193 (494)
T 3lij_A          119 KGGELFDEII--HRMKFNEVDAAVIIKQVLSGVTYLHKH---NIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQK  193 (494)
T ss_dssp             CSCBHHHHHH--HHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECCCTTCEECBTTB
T ss_pred             CCCcHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChhhEEEeCCCCCCcEEEEECCCCeECCCCc
Confidence            9999999987  346799999999999999999999999   9999999999999976   44599999999875433  


Q ss_pred             CcccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCC
Q 044568          147 DFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVD  226 (257)
Q Consensus       147 ~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (257)
                      ......+|+.|+|||.+. ..++.++||||+||++|+|++|..||.....   ..........     .   ........
T Consensus       194 ~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~---~~~~~~i~~~-----~---~~~~~~~~  261 (494)
T 3lij_A          194 KMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQTD---QEILRKVEKG-----K---YTFDSPEW  261 (494)
T ss_dssp             CBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHT-----C---CCCCSGGG
T ss_pred             cccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCCH---HHHHHHHHhC-----C---CCCCchhc
Confidence            234557899999999886 4689999999999999999999999975521   1111111100     0   00000111


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          227 KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       227 ~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ...++.+.+++.+||+.||.+|| +.|+++
T Consensus       262 ~~~s~~~~~li~~~L~~dp~~R~s~~e~l~  291 (494)
T 3lij_A          262 KNVSEGAKDLIKQMLQFDSQRRISAQQALE  291 (494)
T ss_dssp             TTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             ccCCHHHHHHHHHHCCCChhhCccHHHHhc
Confidence            23456789999999999999999 999875

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=100.00  E-value=1.1e-35  Score=259.62  Aligned_cols=186  Identities=18%  Similarity=0.221  Sum_probs=151.9

Q ss_pred             ccccceeeeccc-CCCCCeeeccch--------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCC
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW--------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNG   74 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~--------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~g   74 (257)
                      +.++.||++... ++..+++|...-        ..|++.+....   ......|.+++.+.+.+...+..++||||++ |
T Consensus        65 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~---~~~~~~~~~iv~~~~~~~~~~~~~lv~e~~~-~  140 (382)
T 2vx3_A           65 GSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMN---KHDTEMKYYIVHLKRHFMFRNHLCLVFEMLS-Y  140 (382)
T ss_dssp             ETTEEEEEEEETTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHH---HCSSGGGGGBCCEEEEEEETTEEEEEEECCC-C
T ss_pred             cCCEEEEEEEEcCCCcEEEEEEEeccHHHHHHHHHHHHHHHHHH---hcccccceeEEEeeeeeccCCceEEEEecCC-C
Confidence            578999999865 455678886542        23333333111   1113445679999999999999999999996 5


Q ss_pred             CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeC--CCCceEEeeecccccCCCCccccc
Q 044568           75 SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD--EFWTAKILDFGLAKLPNEDFVIDK  152 (257)
Q Consensus        75 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~--~~~~~kl~dfg~~~~~~~~~~~~~  152 (257)
                      +|.+++.......+++..+..++.|++.||.|||++ +.+|+||||||+||+++  .++.+||+|||++...........
T Consensus       141 ~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a~~~~~~~~~~~  219 (382)
T 2vx3_A          141 NLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQLGQRIYQYI  219 (382)
T ss_dssp             BHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTSCCEEECCCTTCEETTCCCCSSC
T ss_pred             CHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCCCcEEEEeccCceeccccccccc
Confidence            999999865556799999999999999999999942 12999999999999995  477899999999987766666778


Q ss_pred             CCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcC
Q 044568          153 RDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEID  194 (257)
Q Consensus       153 ~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~  194 (257)
                      +|+.|+|||.+.+..++.++|||||||++|||++|+.||...
T Consensus       220 ~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~  261 (382)
T 2vx3_A          220 QSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGA  261 (382)
T ss_dssp             SCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            899999999999999999999999999999999999999865

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=100.00  E-value=1.4e-36  Score=263.67  Aligned_cols=249  Identities=19%  Similarity=0.203  Sum_probs=182.3

Q ss_pred             ccccceeeecc-cCCCCCeeeccc--------hhhhHHHHhHhhhcc--ccccccCCceeeeceeeeecC----ceeEEE
Q 044568            4 TKLSNFYRSSF-NARNSPWISRVS--------WTADIEVLSVAMRGS--KCTRIRGGLLLNVPVRAKLTS----VSGKIE   68 (257)
Q Consensus         4 ~~~~~~y~~~~-~~~~~~~i~~~~--------~~~~~~~~~~~~~~~--~~~~~~h~~i~~~~~~~~~~~----~~~lV~   68 (257)
                      +.++.||+++. .++..+++|...        +.+|++.+.......  ......|+|++++.+.+...+    ..++||
T Consensus        30 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~lv~  109 (373)
T 1q8y_A           30 GHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVF  109 (373)
T ss_dssp             CSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEETTEEEEEEEE
T ss_pred             cCCeEEEEEEecCCCcEEEEEEecCCccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhccCCCCceEEEEE
Confidence            56899999996 456667788654        345555555211100  011234899999999988654    789999


Q ss_pred             eecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeC------CCCceEEeeecccc
Q 044568           69 RPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD------EFWTAKILDFGLAK  142 (257)
Q Consensus        69 E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~------~~~~~kl~dfg~~~  142 (257)
                      ||+ +++|.+++.......+++..+..++.|++.||.|||+++  +++||||||+||+++      ..+.+||+|||++.
T Consensus       110 e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~--~ivH~Dikp~NIll~~~~~~~~~~~~kl~Dfg~a~  186 (373)
T 1q8y_A          110 EVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRC--GIIHTDIKPENVLMEIVDSPENLIQIKIADLGNAC  186 (373)
T ss_dssp             CCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTT--CEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCE
T ss_pred             ecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhcC--CEEecCCChHHeEEeccCCCcCcceEEEccccccc
Confidence            999 889999998655677999999999999999999999953  899999999999994      44589999999998


Q ss_pred             cCCCCcccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCCh---hhHHHHHHHHHhhhhhh----
Q 044568          143 LPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKP---EEIILTNWVYKCFINRE----  215 (257)
Q Consensus       143 ~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~---~~~~~~~~~~~~~~~~~----  215 (257)
                      ..........+|+.|+|||.+.+..++.++||||||+++|||++|..||.......   ....+..........+.    
T Consensus       187 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  266 (373)
T 1q8y_A          187 WYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLR  266 (373)
T ss_dssp             ETTBCCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHH
T ss_pred             ccCCCCCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChHHHHHHHHHhcCCCCHHHHh
Confidence            77666666788999999999999999999999999999999999999998553221   11111111100000000    


Q ss_pred             -------------------------hhh-hhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          216 -------------------------LNK-LVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       216 -------------------------~~~-~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                                               ... +......+......+.+++.+||+.||.+|| ++|+++
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  333 (373)
T 1q8y_A          267 NGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVN  333 (373)
T ss_dssp             HCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHT
T ss_pred             ccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccCCHHHHhh
Confidence                                     000 1111235667788999999999999999999 999986

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=100.00  E-value=3e-37  Score=260.48  Aligned_cols=227  Identities=17%  Similarity=0.162  Sum_probs=174.7

Q ss_pred             ccccceeeecccC-CCCCeeeccc---------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCC
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS---------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRN   73 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~   73 (257)
                      +.++.||+++... +..+++|...         +.+|++.+.         ++.|+|++++.+.+...+..++||||+++
T Consensus        30 G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~---------~l~h~~i~~~~~~~~~~~~~~lv~e~~~~  100 (302)
T 2j7t_A           30 GAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILA---------TCDHPYIVKLLGAYYHDGKLWIMIEFCPG  100 (302)
T ss_dssp             STTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHH---------HCCCTTBCCEEEEEECC-CEEEEEECCTT
T ss_pred             CCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHh---------cCCCCCEeeeeeeeeeCCeEEEEEEeCCC
Confidence            5789999999875 5556676543         233444444         77899999999999999999999999999


Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC---CCccc
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN---EDFVI  150 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~---~~~~~  150 (257)
                      ++|.+++.. ....+++.++..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||++....   .....
T Consensus       101 ~~l~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~  176 (302)
T 2j7t_A          101 GAVDAIMLE-LDRGLTEPQIQVVCRQMLEALNFLHSK---RIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQKRDS  176 (302)
T ss_dssp             EEHHHHHHH-HTSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHHHHC---
T ss_pred             CcHHHHHHh-hccCCCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHHHEEECCCCCEEEEECCCCcccccccccccc
Confidence            999999875 456799999999999999999999999   99999999999999999999999999864311   11233


Q ss_pred             ccCCCCccCccccc-----CCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCC
Q 044568          151 DKRDKGYMAPECYK-----RTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKV  225 (257)
Q Consensus       151 ~~~~~~~~aPE~~~-----~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (257)
                      ..+++.|+|||.+.     ...++.++||||||+++|+|++|..||......   .......         .........
T Consensus       177 ~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~---~~~~~~~---------~~~~~~~~~  244 (302)
T 2j7t_A          177 FIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPM---RVLLKIA---------KSDPPTLLT  244 (302)
T ss_dssp             --CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHH---HHHHHHH---------HSCCCCCSS
T ss_pred             ccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHH---HHHHHHh---------ccCCcccCC
Confidence            46788899999983     567889999999999999999999999754211   0110000         000011122


Q ss_pred             CHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          226 DKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       226 ~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +...+..+.+++.+||+.||.+|| +.|+++
T Consensus       245 ~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  275 (302)
T 2j7t_A          245 PSKWSVEFRDFLKIALDKNPETRPSAAQLLE  275 (302)
T ss_dssp             GGGSCHHHHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred             ccccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence            344567899999999999999999 999975

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=100.00  E-value=9.2e-37  Score=283.19  Aligned_cols=226  Identities=15%  Similarity=0.181  Sum_probs=175.6

Q ss_pred             ccccceeeecccCCC----CCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEe
Q 044568            4 TKLSNFYRSSFNARN----SPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIER   69 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~----~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E   69 (257)
                      +.++.||+|....++    .+++|...          +.+|++.+.         ++.|+||+++.+.+. .+..++|||
T Consensus       401 G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~---------~l~HpnIv~l~~~~~-~~~~~lv~E  470 (656)
T 2j0j_A          401 GQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMR---------QFDHPHIVKLIGVIT-ENPVWIIME  470 (656)
T ss_dssp             CSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHH---------HCCCTTBCCEEEEEC-SSSCEEEEE
T ss_pred             CCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHH---------hCCCCCCCeEEEEEe-cCceEEEEE
Confidence            568999999876543    35666543          233444444         788999999999874 567899999


Q ss_pred             ecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-
Q 044568           70 PVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-  148 (257)
Q Consensus        70 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-  148 (257)
                      |+++|+|.+++.. ....+++..+..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++....... 
T Consensus       471 ~~~~g~L~~~l~~-~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDikp~NILl~~~~~vkL~DFG~a~~~~~~~~  546 (656)
T 2j0j_A          471 LCTLGELRSFLQV-RKFSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTY  546 (656)
T ss_dssp             CCTTCBHHHHHHH-TTTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCCCCCSCCC---
T ss_pred             cCCCCcHHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHhC---CccccccchHhEEEeCCCCEEEEecCCCeecCCCcc
Confidence            9999999999975 455799999999999999999999999   99999999999999999999999999987654322 


Q ss_pred             ---ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCC
Q 044568          149 ---VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTK  224 (257)
Q Consensus       149 ---~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (257)
                         ....+++.|+|||.+.+..++.++||||||+++|||++ |..||......   ......          ... ....
T Consensus       547 ~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~---~~~~~i----------~~~-~~~~  612 (656)
T 2j0j_A          547 YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNN---DVIGRI----------ENG-ERLP  612 (656)
T ss_dssp             -------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH---HHHHHH----------HHT-CCCC
T ss_pred             eeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHH---HHHHHH----------HcC-CCCC
Confidence               22345667999999998889999999999999999997 99999754211   111100          000 1113


Q ss_pred             CCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          225 VDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       225 ~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      .+...++.+.+++.+||+.||.+|| +.|+++.|
T Consensus       613 ~~~~~~~~l~~li~~~l~~dP~~RPs~~el~~~L  646 (656)
T 2j0j_A          613 MPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQL  646 (656)
T ss_dssp             CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCccccHHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence            3445667899999999999999999 99998764

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=100.00  E-value=8.6e-37  Score=259.52  Aligned_cols=230  Identities=15%  Similarity=0.155  Sum_probs=174.8

Q ss_pred             ccccceeeecc-cCCCCCeeeccc---------hhhhHHHHhHhhhccccccccCCceeeeceeeee----cCceeEEEe
Q 044568            4 TKLSNFYRSSF-NARNSPWISRVS---------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL----TSVSGKIER   69 (257)
Q Consensus         4 ~~~~~~y~~~~-~~~~~~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~----~~~~~lV~E   69 (257)
                      +.++.||+++. .++..+++|...         +.+|++.+.         .+.|+||+++.+.+..    ....++|||
T Consensus        40 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~~~~~~~~~~~lv~e  110 (317)
T 2buj_A           40 GGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHR---------LFNHPNILRLVAYCLRERGAKHEAWLLLP  110 (317)
T ss_dssp             --CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHH---------TCCCTTBCCCCEEEEEEETTEEEEEEEEE
T ss_pred             CCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHh---------hcCCCCeeeEEEEEEeccCCCceeEEEEE
Confidence            56889999996 556677888653         234444444         7889999999998873    447889999


Q ss_pred             ecCCCCHHHHHhcc--CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC
Q 044568           70 PVRNGSLTDIIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED  147 (257)
Q Consensus        70 ~~~~gsL~~~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~  147 (257)
                      |+++|+|.+++...  ....+++.++..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||.+......
T Consensus       111 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~  187 (317)
T 2buj_A          111 FFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAK---GYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIH  187 (317)
T ss_dssp             CCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCSSCEESCEE
T ss_pred             eCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEcCCCCEEEEecCcchhcccc
Confidence            99999999999742  356799999999999999999999999   9999999999999999999999999987654321


Q ss_pred             c------------ccccCCCCccCcccccCCC---CCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhh
Q 044568          148 F------------VIDKRDKGYMAPECYKRTP---ISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFI  212 (257)
Q Consensus       148 ~------------~~~~~~~~~~aPE~~~~~~---~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~  212 (257)
                      .            ....+|+.|+|||.+....   ++.++||||||+++|||++|+.||...........  .       
T Consensus       188 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~--~-------  258 (317)
T 2buj_A          188 VEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVA--L-------  258 (317)
T ss_dssp             EESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHH--H-------
T ss_pred             cccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhh--H-------
Confidence            1            2335688899999987554   68899999999999999999999963211100000  0       


Q ss_pred             hhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          213 NRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                        ...... ....+...+..+.+++.+||+.||.+|| ++|+++.|
T Consensus       259 --~~~~~~-~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L  301 (317)
T 2buj_A          259 --AVQNQL-SIPQSPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQL  301 (317)
T ss_dssp             --HHHCC---CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             --HhhccC-CCCccccCCHHHHHHHHHHhhcChhhCCCHHHHHHHh
Confidence              000000 0112234457899999999999999999 99998764

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=100.00  E-value=5.4e-37  Score=257.48  Aligned_cols=227  Identities=19%  Similarity=0.207  Sum_probs=171.4

Q ss_pred             ccccceeeecccCCC----CCeeeccch------------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEE
Q 044568            4 TKLSNFYRSSFNARN----SPWISRVSW------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~----~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV   67 (257)
                      +.++.||+++.....    .+++|....            .+|++.+.         ++.|+|++++.+.+...+ .++|
T Consensus        29 G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~---------~l~h~~i~~~~~~~~~~~-~~~v   98 (291)
T 1u46_A           29 GSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMH---------SLDHRNLIRLYGVVLTPP-MKMV   98 (291)
T ss_dssp             ---CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHH---------HCCCTTBCCEEEEECSSS-CEEE
T ss_pred             CCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHH---------hCCCCCcccEEEEEccCC-ceee
Confidence            568899999865433    356765432            23333333         778999999999988755 8899


Q ss_pred             EeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC
Q 044568           68 ERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED  147 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~  147 (257)
                      |||+++|+|.+++.. ....+++.++..++.|++.||.|||++   +++|+||+|+||+++.++.+||+|||++......
T Consensus        99 ~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~  174 (291)
T 1u46_A           99 TELAPLGSLLDRLRK-HQGHFLLGTLSRYAVQVAEGMGYLESK---RFIHRDLAARNLLLATRDLVKIGDFGLMRALPQN  174 (291)
T ss_dssp             EECCTTCBHHHHHHH-HGGGSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCEECCC-
T ss_pred             EecccCCCHHHHHHh-ccCCcCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEEcCCCCEEEcccccccccccc
Confidence            999999999999975 345689999999999999999999999   9999999999999999999999999998754332


Q ss_pred             c------ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhh
Q 044568          148 F------VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLV  220 (257)
Q Consensus       148 ~------~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (257)
                      .      ....++..|+|||.+.+..++.++||||||+++|+|++ |+.||.....   .......          ....
T Consensus       175 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~---~~~~~~~----------~~~~  241 (291)
T 1u46_A          175 DDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNG---SQILHKI----------DKEG  241 (291)
T ss_dssp             CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCH---HHHHHHH----------HTSC
T ss_pred             ccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCH---HHHHHHH----------HccC
Confidence            2      23345667999999988888999999999999999999 9999975421   1111100          0000


Q ss_pred             cCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          221 RGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       221 ~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      .....+...+..+.+++.+||+.||.+|| +.++++.|
T Consensus       242 ~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l  279 (291)
T 1u46_A          242 ERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFL  279 (291)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCCCCCcCcCHHHHHHHHHHccCCcccCcCHHHHHHHH
Confidence            11123344567899999999999999999 99998764

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=100.00  E-value=1.7e-36  Score=262.52  Aligned_cols=236  Identities=17%  Similarity=0.114  Sum_probs=173.5

Q ss_pred             cccccceeeecccCCCCCeeeccc--------------------hhhhHHHHhHhhhccccccccCCceeeeceeeeec-
Q 044568            3 CTKLSNFYRSSFNARNSPWISRVS--------------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT-   61 (257)
Q Consensus         3 ~~~~~~~y~~~~~~~~~~~i~~~~--------------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~-   61 (257)
                      .+.++.||++...++..+++|...                    +.+|++.+.         ++.|+||+++.+.+... 
T Consensus        32 ~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~~~~  102 (362)
T 3pg1_A           32 SGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLN---------HFHHPNILGLRDIFVHFE  102 (362)
T ss_dssp             EETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHH---------HCCCTTBCCCSEEEEECC
T ss_pred             cCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHH---------hCCCcCccceeeeEEecc
Confidence            367899999998888889998652                    345555555         78899999999998543 


Q ss_pred             ----CceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEee
Q 044568           62 ----SVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILD  137 (257)
Q Consensus        62 ----~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d  137 (257)
                          ...++||||++ |+|.+.+.. ....+++..+..++.|++.||.|||++   +++|+||||+||+++.++.+||+|
T Consensus       103 ~~~~~~~~lv~e~~~-~~l~~~~~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~D  177 (362)
T 3pg1_A          103 EPAMHKLYLVTELMR-TDLAQVIHD-QRIVISPQHIQYFMYHILLGLHVLHEA---GVVHRDLHPGNILLADNNDITICD  177 (362)
T ss_dssp             TTTCCEEEEEEECCS-EEHHHHHHC-TTSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECC
T ss_pred             CCCcceEEEEEccCC-CCHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHHHC---cCEecCCChHHEEEcCCCCEEEEe
Confidence                35799999997 699999875 556799999999999999999999999   999999999999999999999999


Q ss_pred             ecccccCCC--CcccccCCCCccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHh----
Q 044568          138 FGLAKLPNE--DFVIDKRDKGYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKC----  210 (257)
Q Consensus       138 fg~~~~~~~--~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~----  210 (257)
                      ||++.....  ......+|+.|+|||.+.+ ..++.++||||+|+++|+|++|+.||.......   .........    
T Consensus       178 fg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~---~~~~i~~~~~~~~  254 (362)
T 3pg1_A          178 FNLAREDTADANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYN---QLNKIVEVVGTPK  254 (362)
T ss_dssp             TTC---------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH---HHHHHHHHHCCCC
T ss_pred             cCcccccccccccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHHH---HHHHHHHHcCCCC
Confidence            999874332  2244567888999999877 668999999999999999999999997652111   111111000    


Q ss_pred             ------hhhhhhhhhhcCC----------CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          211 ------FINRELNKLVRGT----------KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       211 ------~~~~~~~~~~~~~----------~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                            +............          .......+.+.+++.+||+.||++|| +.|+++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  316 (362)
T 3pg1_A          255 IEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALR  316 (362)
T ss_dssp             HHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             hHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHc
Confidence                  0001111111100          11122346789999999999999999 999975

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=100.00  E-value=4.4e-36  Score=253.68  Aligned_cols=223  Identities=17%  Similarity=0.139  Sum_probs=172.6

Q ss_pred             ccccceeeecccC-CCCCeeeccch-------------hhhHHHHhHhhhccccccccCCceeeeceeee--ecCceeEE
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW-------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAK--LTSVSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~-------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~--~~~~~~lV   67 (257)
                      +.++.||++.... +..+++|....             .+|++.+.         ++.|+|++++.+.+.  ..+..++|
T Consensus        16 G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~i~~~~~~~~~~~~~~~~lv   86 (305)
T 2wtk_C           16 GSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLR---------RLRHKNVIQLVDVLYNEEKQKMYMV   86 (305)
T ss_dssp             CSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHT---------TCCCTTBCCEEEEEECC---CEEEE
T ss_pred             CCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHH---------hcCCCCeeEEEEEEEcCCCCeEEEE
Confidence            5789999999754 45567776542             23333333         788999999999884  45688999


Q ss_pred             EeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC-
Q 044568           68 ERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE-  146 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~-  146 (257)
                      |||++++ |.+.+.......+++.++..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||.+..... 
T Consensus        87 ~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~---~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~  162 (305)
T 2wtk_C           87 MEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQ---GIVHKDIKPGNLLLTTGGTLKISALGVAEALHPF  162 (305)
T ss_dssp             EECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECCTT
T ss_pred             ehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCcccEEEcCCCcEEeeccccccccCcc
Confidence            9999876 88888765667899999999999999999999999   999999999999999999999999999875432 


Q ss_pred             ----CcccccCCCCccCcccccCCC--CCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhh
Q 044568          147 ----DFVIDKRDKGYMAPECYKRTP--ISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLV  220 (257)
Q Consensus       147 ----~~~~~~~~~~~~aPE~~~~~~--~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (257)
                          ......+++.|+|||.+.+..  ++.++||||||+++|||++|..||....   ......             .+.
T Consensus       163 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~---~~~~~~-------------~i~  226 (305)
T 2wtk_C          163 AADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDN---IYKLFE-------------NIG  226 (305)
T ss_dssp             CSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSS---HHHHHH-------------HHH
T ss_pred             ccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCch---HHHHHH-------------HHh
Confidence                123446788999999987654  3789999999999999999999997542   111111             011


Q ss_pred             c-CCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          221 R-GTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       221 ~-~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      . ....+......+.+++.+||+.||.+|| ++|+++
T Consensus       227 ~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  263 (305)
T 2wtk_C          227 KGSYAIPGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQ  263 (305)
T ss_dssp             HCCCCCCSSSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             cCCCCCCCccCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            1 1123344567889999999999999999 999986

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=100.00  E-value=3.8e-36  Score=271.53  Aligned_cols=221  Identities=20%  Similarity=0.229  Sum_probs=175.4

Q ss_pred             ccccceeeecccCC-CCCeeeccc----------------------hhhhHHHHhHhhhccccccccCCceeeeceeeee
Q 044568            4 TKLSNFYRSSFNAR-NSPWISRVS----------------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL   60 (257)
Q Consensus         4 ~~~~~~y~~~~~~~-~~~~i~~~~----------------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~   60 (257)
                      +.++.||+++...+ ..+++|.+.                      +.+|++.+.         ++.|+||+++.+.+..
T Consensus        47 G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~---------~l~hpniv~~~~~~~~  117 (504)
T 3q5i_A           47 GAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLK---------SLDHPNIIKLFDVFED  117 (504)
T ss_dssp             --CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHH---------TCCCTTBCCEEEEEEC
T ss_pred             cCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHH---------hCCCCCCCeEEEEEEc
Confidence            57899999997654 456776543                      234555555         7889999999999999


Q ss_pred             cCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCC---ceEEee
Q 044568           61 TSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW---TAKILD  137 (257)
Q Consensus        61 ~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~---~~kl~d  137 (257)
                      .+..++|||||++|+|.+.+.  ....+++.++..++.|++.||.|||++   +|+||||||+||+++.++   .+||+|
T Consensus       118 ~~~~~lv~e~~~gg~L~~~l~--~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~D  192 (504)
T 3q5i_A          118 KKYFYLVTEFYEGGELFEQII--NRHKFDECDAANIMKQILSGICYLHKH---NIVHRDIKPENILLENKNSLLNIKIVD  192 (504)
T ss_dssp             SSEEEEEEECCTTCBHHHHHH--HHSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESSTTCCSSEEECC
T ss_pred             CCEEEEEEecCCCCcHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCcHHHEEEecCCCCccEEEEE
Confidence            999999999999999999997  346799999999999999999999999   999999999999998765   699999


Q ss_pred             ecccccCCCC--cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhh
Q 044568          138 FGLAKLPNED--FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRE  215 (257)
Q Consensus       138 fg~~~~~~~~--~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~  215 (257)
                      ||++......  .....+|+.|+|||.+. ..++.++||||+|+++|+|++|..||......   .......        
T Consensus       193 fg~a~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~---~~~~~i~--------  260 (504)
T 3q5i_A          193 FGLSSFFSKDYKLRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFGGQNDQ---DIIKKVE--------  260 (504)
T ss_dssp             CTTCEECCTTSCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH---HHHHHHH--------
T ss_pred             CCCCEEcCCCCccccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCCCCCHH---HHHHHHH--------
Confidence            9998765432  34567899999999986 46899999999999999999999999755211   1111110        


Q ss_pred             hhhhhcCC-CCC----HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          216 LNKLVRGT-KVD----KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       216 ~~~~~~~~-~~~----~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                           ... .++    ...++.+.+++.+||+.||.+|| ++|+++
T Consensus       261 -----~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~  301 (504)
T 3q5i_A          261 -----KGKYYFDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEALN  301 (504)
T ss_dssp             -----HCCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             -----cCCCCCCccccCCCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence                 110 111    12346789999999999999999 999975

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=100.00  E-value=1.9e-36  Score=255.10  Aligned_cols=227  Identities=15%  Similarity=0.168  Sum_probs=176.6

Q ss_pred             ccccceeeecccC-CCCCeeeccch------------------hhhHHHHhHhhhcccccccc-CCceeeeceeeeecCc
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVSW------------------TADIEVLSVAMRGSKCTRIR-GGLLLNVPVRAKLTSV   63 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~~------------------~~~~~~~~~~~~~~~~~~~~-h~~i~~~~~~~~~~~~   63 (257)
                      +.++.||++.... ++.+++|....                  .+|++.+.         ++. |+|++++.+.+...+.
T Consensus        28 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~---------~l~~h~~i~~~~~~~~~~~~   98 (298)
T 1phk_A           28 GVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILR---------KVSGHPNIIQLKDTYETNTF   98 (298)
T ss_dssp             CSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHH---------HHTTCTTBCCEEEEEECSSE
T ss_pred             CCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHH---------HhcCCCCEeeeeeeeccCCe
Confidence            5688999999754 56677886532                  22333333         564 9999999999999999


Q ss_pred             eeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeeccccc
Q 044568           64 SGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKL  143 (257)
Q Consensus        64 ~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~  143 (257)
                      .++||||+++++|.+++..  ...+++.++..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||.+..
T Consensus        99 ~~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~  173 (298)
T 1phk_A           99 FFLVFDLMKKGELFDYLTE--KVTLSEKETRKIMRALLEVICALHKL---NIVHRDLKPENILLDDDMNIKLTDFGFSCQ  173 (298)
T ss_dssp             EEEEEECCTTCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred             EEEEEeccCCCcHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEEcCCCcEEEecccchhh
Confidence            9999999999999999973  46799999999999999999999999   999999999999999999999999999875


Q ss_pred             CCC--CcccccCCCCccCccccc------CCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhh
Q 044568          144 PNE--DFVIDKRDKGYMAPECYK------RTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRE  215 (257)
Q Consensus       144 ~~~--~~~~~~~~~~~~aPE~~~------~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~  215 (257)
                      ...  ......+++.|+|||.+.      ...++.++||||||+++|+|++|..||....   .........     ...
T Consensus       174 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~---~~~~~~~~~-----~~~  245 (298)
T 1phk_A          174 LDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRK---QMLMLRMIM-----SGN  245 (298)
T ss_dssp             CCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS---HHHHHHHHH-----HTC
T ss_pred             cCCCcccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCcc---HHHHHHHHh-----cCC
Confidence            433  224456788999999985      4467899999999999999999999997542   111111100     000


Q ss_pred             hhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          216 LNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       216 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                         ...+.......+..+.+++.+||+.||++|| +.|+++
T Consensus       246 ---~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  283 (298)
T 1phk_A          246 ---YQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA  283 (298)
T ss_dssp             ---CCCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             ---cccCcccccccCHHHHHHHHHHccCCcccCCCHHHHHh
Confidence               0000111234567899999999999999999 999975

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=100.00  E-value=1.9e-36  Score=270.33  Aligned_cols=168  Identities=18%  Similarity=0.218  Sum_probs=134.3

Q ss_pred             ccccceeeeccc-CCCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeec-----CceeE
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT-----SVSGK   66 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~-----~~~~l   66 (257)
                      +.++.||++... +++.+++|.+.           +.+|++.+.         ++.|+||+++.+++...     ...++
T Consensus        64 G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~---------~l~h~niv~l~~~~~~~~~~~~~~~~l  134 (458)
T 3rp9_A           64 GSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILN---------RLNHDHVVKVLDIVIPKDVEKFDELYV  134 (458)
T ss_dssp             ----CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHH---------HCCCTTBCCEEEECCCSCTTTCCCEEE
T ss_pred             cCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHH---------hCCCCCCCceEEEEecCCcccCceEEE
Confidence            568999999855 56667888643           234555555         78899999999998543     56899


Q ss_pred             EEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC
Q 044568           67 IERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE  146 (257)
Q Consensus        67 V~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~  146 (257)
                      ||||+. |+|.+++.  ....+++..+..++.||+.||.|||++   +|+||||||+|||++.++.+||+|||+++....
T Consensus       135 v~e~~~-~~L~~~~~--~~~~l~~~~~~~~~~qi~~aL~~LH~~---~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~  208 (458)
T 3rp9_A          135 VLEIAD-SDFKKLFR--TPVYLTELHIKTLLYNLLVGVKYVHSA---GILHRDLKPANCLVNQDCSVKVCDFGLARTVDY  208 (458)
T ss_dssp             EECCCS-EEHHHHHH--SSCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTTCBCTTS
T ss_pred             EEeccc-cchhhhcc--cCCCCCHHHHHHHHHHHHHHHHHHHhC---CcCCCCCChhhEEECCCCCEeecccccchhccC
Confidence            999985 79999997  567799999999999999999999999   999999999999999999999999999976432


Q ss_pred             C------------------------------cccccCCCCccCccccc-CCCCCccccchhHHHHHHHHHh
Q 044568          147 D------------------------------FVIDKRDKGYMAPECYK-RTPISVKADVYGYGIVLLETIC  186 (257)
Q Consensus       147 ~------------------------------~~~~~~~~~~~aPE~~~-~~~~~~~~Di~s~G~~l~el~~  186 (257)
                      .                              .....+|+.|+|||++. ...++.++|||||||++|||++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~ellt  279 (458)
T 3rp9_A          209 PENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLN  279 (458)
T ss_dssp             CTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHT
T ss_pred             ccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHH
Confidence            1                              23346688899999864 5669999999999999999999

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=100.00  E-value=9.2e-37  Score=267.59  Aligned_cols=236  Identities=15%  Similarity=0.128  Sum_probs=177.0

Q ss_pred             ccccceeeecccCCCCCeeeccc-----hhhhHHHHhHhhhccccccccCCceeeeceeeeecCc------eeEEEeecC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS-----WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSV------SGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~-----~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~------~~lV~E~~~   72 (257)
                      +.++.||+++...++.+++|++.     ..+|++.+.         .+.|+||+++.+++...+.      .++||||++
T Consensus        51 G~~g~V~~a~~~~~~~~aikk~~~~~~~~~~E~~il~---------~l~h~niv~l~~~~~~~~~~~~~~~~~lv~e~~~  121 (394)
T 4e7w_A           51 GSFGVVFQAKLVESDEVAIKKVLQDKRFKNRELQIMR---------IVKHPNVVDLKAFFYSNGDKKDEVFLNLVLEYVP  121 (394)
T ss_dssp             ETTEEEEEEEETTTEEEEEEEEECCTTSCCHHHHHHH---------TCCCTTBCCEEEEEEEESSSSSCEEEEEEEECCS
T ss_pred             CCCeEEEEEEECCCCeEEEEEEecCcchHHHHHHHHH---------hCCCCCcceEEEEEEecCCCCCceEEEEEeeccC
Confidence            57899999999888888887653     245777766         7889999999999865543      789999998


Q ss_pred             CCCHHHHHhc--cCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeC-CCCceEEeeecccccCC--CC
Q 044568           73 NGSLTDIIFC--SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD-EFWTAKILDFGLAKLPN--ED  147 (257)
Q Consensus        73 ~gsL~~~l~~--~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~-~~~~~kl~dfg~~~~~~--~~  147 (257)
                      ++ +.+.+..  .....+++..+..++.|++.||.|||++   +|+||||||+||+++ .++.+||+|||+++...  ..
T Consensus       122 ~~-l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~~~~~~  197 (394)
T 4e7w_A          122 ET-VYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSI---GICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAGEP  197 (394)
T ss_dssp             EE-HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTTCEECCTTCC
T ss_pred             cc-HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEcCCCCcEEEeeCCCcccccCCCC
Confidence            64 4444321  1467799999999999999999999999   999999999999998 78899999999987542  33


Q ss_pred             cccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhh---------hhhhh
Q 044568          148 FVIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFI---------NRELN  217 (257)
Q Consensus       148 ~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~---------~~~~~  217 (257)
                      .....+|+.|+|||.+.+. .++.++||||+||++|||++|+.||.+.....   .+.........         .....
T Consensus       198 ~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~---~l~~i~~~~g~p~~~~~~~~~~~~~  274 (394)
T 4e7w_A          198 NVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGID---QLVEIIKVLGTPSREQIKTMNPNYM  274 (394)
T ss_dssp             CCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HHHHHHHHHCCCCHHHHHHHCGGGS
T ss_pred             CcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH---HHHHHHHHhCCCCHHHHHhhChhhh
Confidence            3456778899999998765 58999999999999999999999998653221   11111110000         00000


Q ss_pred             -hhhc---CC----CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          218 -KLVR---GT----KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       218 -~~~~---~~----~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                       ...+   +.    .++...++.+.+++.+||+.||.+|| +.|+++
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  321 (394)
T 4e7w_A          275 EHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALC  321 (394)
T ss_dssp             SSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             hhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhc
Confidence             0000   00    11223457899999999999999999 999975

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.2e-36  Score=267.52  Aligned_cols=178  Identities=19%  Similarity=0.201  Sum_probs=139.8

Q ss_pred             ccccceeeeccc---CCCCCeeeccc-------hhhhHHHHhHhhhccccccccCCceeeeceeeee--cCceeEEEeec
Q 044568            4 TKLSNFYRSSFN---ARNSPWISRVS-------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL--TSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~---~~~~~~i~~~~-------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~--~~~~~lV~E~~   71 (257)
                      +.++.||+++..   ++..+++|...       +.+|++.+.         ++.|+||+++.+.+..  ....++||||+
T Consensus        32 G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~E~~~l~---------~l~hpniv~~~~~~~~~~~~~~~lv~e~~  102 (405)
T 3rgf_A           32 GTYGHVYKAKRKDGKDDKDYALKQIEGTGISMSACREIALLR---------ELKHPNVISLQKVFLSHADRKVWLLFDYA  102 (405)
T ss_dssp             ----EEEEEEESSSSCCCCEEEEECSSSSCCHHHHHHHHHHH---------HCCCTTBCCCCEEEEETTTTEEEEEEECC
T ss_pred             cCCeEEEEEEEccCCCCeEEEEEEECCCCCCHHHHHHHHHHH---------hcCCCCeeeEeeEEecCCCCeEEEEEeCC
Confidence            578999999865   46677888654       346666666         7889999999999954  67889999999


Q ss_pred             CCCCHHHHHhcc-------CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceee----CCCCceEEeeecc
Q 044568           72 RNGSLTDIIFCS-------AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM----DEFWTAKILDFGL  140 (257)
Q Consensus        72 ~~gsL~~~l~~~-------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~----~~~~~~kl~dfg~  140 (257)
                      . |+|.+++...       ....+++..+..++.|++.||.|||++   +|+||||||+||++    +.++.+||+|||+
T Consensus       103 ~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~  178 (405)
T 3rgf_A          103 E-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGRVKIADMGF  178 (405)
T ss_dssp             S-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECCSSTTTTCEEECCTTC
T ss_pred             C-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeCCCcCHHHeEEecCCCCCCcEEEEECCC
Confidence            7 5888887521       223599999999999999999999999   99999999999999    6778999999999


Q ss_pred             cccCCCC------cccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcC
Q 044568          141 AKLPNED------FVIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEID  194 (257)
Q Consensus       141 ~~~~~~~------~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~  194 (257)
                      +......      .....+|+.|+|||.+.+. .++.++|||||||++|||++|..||...
T Consensus       179 a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~  239 (405)
T 3rgf_A          179 ARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCR  239 (405)
T ss_dssp             CC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCC
T ss_pred             ceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCc
Confidence            8754422      2345778999999999874 4899999999999999999999999755

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=2.1e-36  Score=264.18  Aligned_cols=236  Identities=18%  Similarity=0.128  Sum_probs=176.9

Q ss_pred             ccccceeeecc-cCCCCCeeeccc-----hhhhHHHHhHhhhccccccccCCceeeeceeeeec----------------
Q 044568            4 TKLSNFYRSSF-NARNSPWISRVS-----WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT----------------   61 (257)
Q Consensus         4 ~~~~~~y~~~~-~~~~~~~i~~~~-----~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~----------------   61 (257)
                      +.++.||++.. .+++.+++|...     ..+|++.+.         .+.|+||+++.+.+...                
T Consensus        18 G~fg~V~~a~~~~~~~~vAiK~~~~~~~~~~~E~~il~---------~l~hpnIv~l~~~~~~~~~~~~~~~~~~~~~~~   88 (383)
T 3eb0_A           18 GSFGIVCEVFDIESGKRFALKKVLQDPRYKNRELDIMK---------VLDHVNIIKLVDYFYTTGDEEPKPPQPPDDHNK   88 (383)
T ss_dssp             C-CEEEEEEEETTTCCEEEEEEEECCTTSCCHHHHHHT---------TCCCTTBCCEEEEEEEC----------------
T ss_pred             ccCEEEEEEEECCCCCEEEEEEEecCcchHHHHHHHHH---------HcCCCCccchhheeeecCccccccccccccccc
Confidence            57899999985 566777888643     346776666         78899999999988543                


Q ss_pred             ----------------------CceeEEEeecCCCCHHHHHhc--cCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeee
Q 044568           62 ----------------------SVSGKIERPVRNGSLTDIIFC--SAERNPYWNQRVRIALDVAKGILYLHDECEPPILH  117 (257)
Q Consensus        62 ----------------------~~~~lV~E~~~~gsL~~~l~~--~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h  117 (257)
                                            ...++||||++ |+|.+.+..  .....+++..+..++.|++.||.|||++   +++|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---gi~H  164 (383)
T 3eb0_A           89 LGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHSL---GICH  164 (383)
T ss_dssp             ---------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEEC
T ss_pred             ccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---cCcc
Confidence                                  34789999998 588887753  1567899999999999999999999999   9999


Q ss_pred             ccCCCCceeeC-CCCceEEeeecccccCC--CCcccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCc
Q 044568          118 CDIKPQNILMD-EFWTAKILDFGLAKLPN--EDFVIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEI  193 (257)
Q Consensus       118 ~dl~~~nil~~-~~~~~kl~dfg~~~~~~--~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~  193 (257)
                      |||||+||+++ .++.+||+|||.+....  .......+|+.|+|||.+.+. .++.++||||+||++|||++|+.||..
T Consensus       165 ~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~  244 (383)
T 3eb0_A          165 RDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEPSVAYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELILGKPLFSG  244 (383)
T ss_dssp             SCCCGGGEEEETTTTEEEECCCTTCEECCTTSCCCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             CccCHHHEEEcCCCCcEEEEECCCCcccCCCCCCcCcccCCCccCHHHhcCCCCCCcchhhhhHHHHHHHHHhCCCCCCC
Confidence            99999999997 68899999999997543  233455778899999998765 489999999999999999999999986


Q ss_pred             CCCChhhHHHHHHHHHhhhh--hhhhhhh-----------cCC----CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          194 DASKPEEIILTNWVYKCFIN--RELNKLV-----------RGT----KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----------~~~----~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .....   .+..........  ......-           ...    .++...+..+.+++.+||+.||++|| +.|+++
T Consensus       245 ~~~~~---~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  321 (383)
T 3eb0_A          245 ETSID---QLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYEPDLRINPYEAMA  321 (383)
T ss_dssp             SSHHH---HHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             CChHH---HHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            52221   111111110000  0000000           000    12333456799999999999999999 999975

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=100.00  E-value=7.2e-37  Score=261.51  Aligned_cols=225  Identities=16%  Similarity=0.165  Sum_probs=157.8

Q ss_pred             cccccceeeeccc-CCCCCeeeccc---------hhhhHHHHhHhhhcccccccc-CCceeeeceeee--------ecCc
Q 044568            3 CTKLSNFYRSSFN-ARNSPWISRVS---------WTADIEVLSVAMRGSKCTRIR-GGLLLNVPVRAK--------LTSV   63 (257)
Q Consensus         3 ~~~~~~~y~~~~~-~~~~~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~-h~~i~~~~~~~~--------~~~~   63 (257)
                      .+.++.||+++.. ++..+++|...         +.+|++.+.         ++. |+||+++.+.+.        ....
T Consensus        38 ~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~---------~l~~h~~iv~~~~~~~~~~~~~~~~~~~  108 (337)
T 3ll6_A           38 EGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMK---------KLSGHPNIVQFCSAASIGKEESDTGQAE  108 (337)
T ss_dssp             CCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHH---------HHTTSTTBCCEEEEEEECTTTSTTSSEE
T ss_pred             cCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHH---------HhccCCChhhccccccccccccccCCce
Confidence            3578999999954 56677888652         223333333         664 999999999884        3445


Q ss_pred             eeEEEeecCCCCHHHHHhcc-CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCC--eeeccCCCCceeeCCCCceEEeeecc
Q 044568           64 SGKIERPVRNGSLTDIIFCS-AERNPYWNQRVRIALDVAKGILYLHDECEPP--ILHCDIKPQNILMDEFWTAKILDFGL  140 (257)
Q Consensus        64 ~~lV~E~~~~gsL~~~l~~~-~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~--i~h~dl~~~nil~~~~~~~kl~dfg~  140 (257)
                      .++||||+. |+|.+++... ....+++.++..++.|++.||.|||++   +  ++|+||||+||+++.++.+||+|||+
T Consensus       109 ~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~  184 (337)
T 3ll6_A          109 FLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQ---KPPIIHRDLKVENLLLSNQGTIKLCDFGS  184 (337)
T ss_dssp             EEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCCCCCGGGCEECTTSCEEBCCCTT
T ss_pred             EEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCEEEccCCcccEEECCCCCEEEecCcc
Confidence            789999996 7999998642 345699999999999999999999999   8  99999999999999999999999999


Q ss_pred             cccCCCCc---------------ccccCCCCccCcccc---cCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHH
Q 044568          141 AKLPNEDF---------------VIDKRDKGYMAPECY---KRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEII  202 (257)
Q Consensus       141 ~~~~~~~~---------------~~~~~~~~~~aPE~~---~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~  202 (257)
                      +.......               ....+|+.|+|||.+   .+..++.++||||||+++|||++|+.||.......    
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~----  260 (337)
T 3ll6_A          185 ATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKLR----  260 (337)
T ss_dssp             CBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC-----------
T ss_pred             ceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHHH----
Confidence            87644322               134578889999998   45678899999999999999999999996431110    


Q ss_pred             HHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          203 LTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                         ..         ..... ..........+.+++.+||+.||.+|| +.|+++.|
T Consensus       261 ---~~---------~~~~~-~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l  303 (337)
T 3ll6_A          261 ---IV---------NGKYS-IPPHDTQYTVFHSLIRAMLQVNPEERLSIAEVVHQL  303 (337)
T ss_dssp             -----------------CC-CCTTCCSSGGGHHHHHHHSCSSGGGSCCHHHHHHHH
T ss_pred             ---hh---------cCccc-CCcccccchHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence               00         00000 011122234578899999999999999 99998764

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=100.00  E-value=4.1e-36  Score=268.66  Aligned_cols=232  Identities=16%  Similarity=0.125  Sum_probs=169.0

Q ss_pred             ccccceeeeccc-CCCCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeec------Ccee
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT------SVSG   65 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~------~~~~   65 (257)
                      +.++.||++... +++.+++|.+.-           .+|++.+.         .+.|+||+++.+.+...      ...+
T Consensus        73 G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~---------~l~hpnIv~l~~~~~~~~~~~~~~~~~  143 (464)
T 3ttj_A           73 GAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMK---------CVNHKNIISLLNVFTPQKTLEEFQDVY  143 (464)
T ss_dssp             CSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHH---------HCCCTTBCCCSEEECSCCSTTTCCEEE
T ss_pred             CCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHH---------hCCCCCCCcEEEEEccCCccccCCeEE
Confidence            578999999754 456678887541           23333333         77899999999998754      3569


Q ss_pred             EEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC
Q 044568           66 KIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN  145 (257)
Q Consensus        66 lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~  145 (257)
                      |||||+++ +|.+.+..    .+++..+..++.|++.||.|||++   +|+||||||+||+++.++.+||+|||+++...
T Consensus       144 lv~E~~~~-~l~~~~~~----~l~~~~~~~~~~qil~aL~~lH~~---~iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~  215 (464)
T 3ttj_A          144 LVMELMDA-NLCQVIQM----ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAG  215 (464)
T ss_dssp             EEEECCSE-EHHHHHTS----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCCC----
T ss_pred             EEEeCCCC-CHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChHhEEEeCCCCEEEEEEEeeeecC
Confidence            99999975 67777752    389999999999999999999999   99999999999999999999999999998654


Q ss_pred             CC--cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhh---------hh
Q 044568          146 ED--FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFI---------NR  214 (257)
Q Consensus       146 ~~--~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~---------~~  214 (257)
                      ..  .....+|+.|+|||.+.+..++.++||||+||++|||++|+.||.+.....   .+.........         ..
T Consensus       216 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~~---~~~~i~~~lg~p~~~~~~~~~~  292 (464)
T 3ttj_A          216 TSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYID---QWNKVIEQLGTPCPEFMKKLQP  292 (464)
T ss_dssp             -CCCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH---HHHHHHHHHCSCCHHHHTTSCH
T ss_pred             CCcccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHH---HHHHHHHhcCCCCHHHHHHcch
Confidence            32  345678999999999999999999999999999999999999997652211   11111110000         00


Q ss_pred             hhhhhhcCC---------------------CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          215 ELNKLVRGT---------------------KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       215 ~~~~~~~~~---------------------~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .........                     .......+.+.+|+.+||+.||++|| ++|+++
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~  355 (464)
T 3ttj_A          293 TVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQ  355 (464)
T ss_dssp             HHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             hhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            011111100                     00111256789999999999999999 999985

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=100.00  E-value=1.4e-36  Score=264.12  Aligned_cols=233  Identities=15%  Similarity=0.157  Sum_probs=160.7

Q ss_pred             ccccceeeecc-cCCCCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeec------Ccee
Q 044568            4 TKLSNFYRSSF-NARNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT------SVSG   65 (257)
Q Consensus         4 ~~~~~~y~~~~-~~~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~------~~~~   65 (257)
                      +.++.||++.. .++..+++|....           .+|++.+.         .+.|+||+++.+.+...      ...+
T Consensus        40 G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~---------~l~hpnIv~~~~~~~~~~~~~~~~~~~  110 (367)
T 2fst_X           40 GAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLK---------HMKHENVIGLLDVFTPARSLEEFNDVY  110 (367)
T ss_dssp             ---CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHH---------HCCCTTBCCCSEEECSCSSGGGCCCCE
T ss_pred             cCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHH---------hCCCCCCCcEEEEEecCCccccCCeEE
Confidence            56899999984 4566778887532           23444444         78899999999988654      5679


Q ss_pred             EEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC
Q 044568           66 KIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN  145 (257)
Q Consensus        66 lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~  145 (257)
                      +||||+ +++|.+++.   ...+++..+..++.|++.||.|||++   +++||||||+||+++.++.+||+|||+++...
T Consensus       111 lv~e~~-~~~L~~~~~---~~~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kL~DFG~a~~~~  183 (367)
T 2fst_X          111 LVTHLM-GADLNNIVK---CQKLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGLARHTA  183 (367)
T ss_dssp             EEEECC-CEECC--------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECC--------
T ss_pred             EEeccc-CCCHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHhhEEECCCCCEEEeecccccccc
Confidence            999999 689999985   35799999999999999999999999   99999999999999999999999999998766


Q ss_pred             CCcccccCCCCccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHh----------hhhh
Q 044568          146 EDFVIDKRDKGYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKC----------FINR  214 (257)
Q Consensus       146 ~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~----------~~~~  214 (257)
                      .......+|+.|+|||.+.+ ..++.++||||+||++|||++|+.||.+.....   .+.......          ....
T Consensus       184 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~---~l~~i~~~~g~p~~~~~~~~~~~  260 (367)
T 2fst_X          184 DEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHID---QLKLILRLVGTPGAELLKKISSE  260 (367)
T ss_dssp             -------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHH---HHHHHHHHHCSCCHHHHTTCCCH
T ss_pred             ccCCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH---HHHHHHHHhCCCCHHHHHHhhhH
Confidence            55566788999999999887 578999999999999999999999997652211   111111100          0001


Q ss_pred             hhhhhhc----CCCCC-----HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          215 ELNKLVR----GTKVD-----KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       215 ~~~~~~~----~~~~~-----~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .....+.    ....+     ....+.+.+|+.+||+.||.+|| ++|+++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~  311 (367)
T 2fst_X          261 SARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA  311 (367)
T ss_dssp             HHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             HHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhc
Confidence            1111111    00111     12346789999999999999999 999975

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=100.00  E-value=5.2e-36  Score=264.91  Aligned_cols=236  Identities=17%  Similarity=0.130  Sum_probs=175.5

Q ss_pred             ccccceeeeccc-CCCCCeeeccc-----hhhhHHHHhHhhhccccccccCCceeeeceeeeecC------ceeEEEeec
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS-----WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTS------VSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~-----~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~------~~~lV~E~~   71 (257)
                      +.++.||+++.. +++.+++|.+.     ..+|++.+.         +++|+||+++.+++....      ..++||||+
T Consensus        65 G~fg~Vy~~~~~~~~~~vaiK~~~~~~~~~~~E~~il~---------~l~hpniv~l~~~~~~~~~~~~~~~~~lv~e~~  135 (420)
T 1j1b_A           65 GSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMR---------KLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYV  135 (420)
T ss_dssp             CSSEEEEEEEETTTCCEEEEEEEECCTTSCCHHHHHHH---------TCCCTTBCCEEEEEEEEETTTTEEEEEEEEECC
T ss_pred             CCCEEEEEEEECCCCcEEEEEEecccchhHHHHHHHHH---------HcCCCCccceeeEEeccCCCCcceeEEeehhcc
Confidence            578999999976 46778888653     245777776         888999999988876432      367899999


Q ss_pred             CCCCHHHHHhc--cCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCC-CceEEeeecccccCC--C
Q 044568           72 RNGSLTDIIFC--SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF-WTAKILDFGLAKLPN--E  146 (257)
Q Consensus        72 ~~gsL~~~l~~--~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~-~~~kl~dfg~~~~~~--~  146 (257)
                      ++ +|.+.+..  .....+++..+..++.|++.||.|||++   +|+||||||+|||++.+ +.+||+|||+++...  .
T Consensus       136 ~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NILl~~~~~~~kl~DFG~a~~~~~~~  211 (420)
T 1j1b_A          136 PE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF---GICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGE  211 (420)
T ss_dssp             CE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEEETTTTEEEECCCTTCEECCTTC
T ss_pred             cc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChhhEEEeCCCCeEEeccchhhhhcccCC
Confidence            75 67766642  1467899999999999999999999999   99999999999999954 578999999997543  2


Q ss_pred             CcccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhh--hhhhhhhcC-
Q 044568          147 DFVIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFIN--RELNKLVRG-  222 (257)
Q Consensus       147 ~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-  222 (257)
                      ......+|+.|+|||.+.+. .++.++|||||||++|||++|+.||......   ..+..........  ..+...... 
T Consensus       212 ~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~---~~l~~i~~~lg~p~~~~~~~~~~~~  288 (420)
T 1j1b_A          212 PNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGV---DQLVEIIKVLGTPTREQIREMNPNY  288 (420)
T ss_dssp             CCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH---HHHHHHHHHHCSCCHHHHHHHCSCC
T ss_pred             CceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHH---HHHHHHHHHhCCCCHHHHHhhChhh
Confidence            23455788999999998765 6899999999999999999999999865221   1111111110000  011111000 


Q ss_pred             --C------------CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          223 --T------------KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       223 --~------------~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                        .            .++...+..+.+|+.+||+.||.+|| +.|+++
T Consensus       289 ~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~  336 (420)
T 1j1b_A          289 TEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACA  336 (420)
T ss_dssp             CCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             hhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhC
Confidence              0            01223457899999999999999999 999875

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=100.00  E-value=4e-36  Score=252.03  Aligned_cols=235  Identities=18%  Similarity=0.174  Sum_probs=168.3

Q ss_pred             ccccceeeecc-cCCCCCeeeccchh----hhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHH
Q 044568            4 TKLSNFYRSSF-NARNSPWISRVSWT----ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTD   78 (257)
Q Consensus         4 ~~~~~~y~~~~-~~~~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~   78 (257)
                      +.++.||+++. .+++.+++|.....    .+.+.+.  ..........|+|++++.+.+...+..++||||++ |+|.+
T Consensus        18 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~   94 (290)
T 3fme_A           18 GAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLM--DLDISMRTVDCPFTVTFYGALFREGDVWICMELMD-TSLDK   94 (290)
T ss_dssp             CSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHH--HHHHHHTTCCCTTBCCEEEEEECSSSEEEEEECCS-EEHHH
T ss_pred             CCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHH--HHHHHHHhCCCCeEEEEeeeeeccCCEEEEEehhc-cchHH
Confidence            57899999996 45666788866421    1111111  11112347789999999999999999999999997 58888


Q ss_pred             HHhcc--CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc--ccccCC
Q 044568           79 IIFCS--AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF--VIDKRD  154 (257)
Q Consensus        79 ~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~--~~~~~~  154 (257)
                      ++...  ....+++..+..++.|++.||.|||++.  +++|+||||+||+++.++.+||+|||++.......  ....+|
T Consensus        95 ~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~--~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~t  172 (290)
T 3fme_A           95 FYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKL--SVIHRDVKPSNVLINALGQVKMCDFGISGYLVDDVAKDIDAGC  172 (290)
T ss_dssp             HHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHS--CCCCCCCSGGGCEECTTCCEEBCCC---------------CCC
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcC--CeecCCCCHHHEEECCCCCEEEeecCCcccccccccccccCCC
Confidence            87532  4577999999999999999999999842  89999999999999999999999999987543322  334688


Q ss_pred             CCccCcccc----cCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHH
Q 044568          155 KGYMAPECY----KRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNL  230 (257)
Q Consensus       155 ~~~~aPE~~----~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (257)
                      +.|+|||.+    .+..++.++||||+|+++|||++|+.||........  .....         . ....+.......+
T Consensus       173 ~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~--~~~~~---------~-~~~~~~~~~~~~~  240 (290)
T 3fme_A          173 KPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQ--QLKQV---------V-EEPSPQLPADKFS  240 (290)
T ss_dssp             CCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHH--HHHHH---------H-HSCCCCCCTTTSC
T ss_pred             ccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHH--HHHHH---------h-ccCCCCcccccCC
Confidence            999999996    455688999999999999999999999975322111  11100         0 0011112223456


Q ss_pred             HHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          231 ENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       231 ~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ..+.+++.+||+.||++|| ++|+++
T Consensus       241 ~~~~~li~~~l~~~p~~Rpt~~e~l~  266 (290)
T 3fme_A          241 AEFVDFTSQCLKKNSKERPTYPELMQ  266 (290)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             HHHHHHHHHHhhcChhhCcCHHHHHh
Confidence            7799999999999999999 999975

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=100.00  E-value=1.7e-35  Score=255.73  Aligned_cols=239  Identities=18%  Similarity=0.115  Sum_probs=168.8

Q ss_pred             ccccceeeeccc-CCCCCeeeccch-----hhhHHHHhHhhhccccccccCCceeeeceeeeecCc-------eeEEEee
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW-----TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSV-------SGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~-----~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~-------~~lV~E~   70 (257)
                      +.++.||+++.. ++..+++|...-     .++.+.+.      .+..+.|+||+++.+++...+.       .++||||
T Consensus        34 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~------~l~~l~h~niv~~~~~~~~~~~~~~~~~~~~lv~e~  107 (360)
T 3e3p_A           34 GTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQIMQ------DLAVLHHPNIVQLQSYFYTLGERDRRDIYLNVVMEY  107 (360)
T ss_dssp             -----CEEEEETTTCCEEEEEEEECCTTCCCHHHHHHH------HHHHHCCTTBCCEEEEEEEECSSCTTCEEEEEEEEC
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEecCccccHHHHHHHH------HHHhcCCCCcccHHHhhhccccccccceeEEEEeec
Confidence            578999999975 466678885421     22222222      2226789999999999876544       7899999


Q ss_pred             cCCCCHHHHHhc--cCCCCCCHHHHHHHHHHHHHHHHHHh--hCCCCCeeeccCCCCceeeCC-CCceEEeeecccccCC
Q 044568           71 VRNGSLTDIIFC--SAERNPYWNQRVRIALDVAKGILYLH--DECEPPILHCDIKPQNILMDE-FWTAKILDFGLAKLPN  145 (257)
Q Consensus        71 ~~~gsL~~~l~~--~~~~~l~~~~~~~~~~~i~~~l~~lh--~~~~~~i~h~dl~~~nil~~~-~~~~kl~dfg~~~~~~  145 (257)
                      +++ +|.+.+..  .....+++..+..++.|++.||.|||  ++   +++||||||+||+++. ++.+||+|||++....
T Consensus       108 ~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~---~ivH~Dlkp~NIll~~~~~~~kl~Dfg~a~~~~  183 (360)
T 3e3p_A          108 VPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSV---NVCHRDIKPHNVLVNEADGTLKLCDFGSAKKLS  183 (360)
T ss_dssp             CSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTT---CCBCSCCCGGGEEEETTTTEEEECCCTTCBCCC
T ss_pred             ccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCC---CeecCcCCHHHEEEeCCCCcEEEeeCCCceecC
Confidence            986 55554432  15667899999999999999999999  88   9999999999999996 8899999999997644


Q ss_pred             CC--cccccCCCCccCcccccCCC-CCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhh-hhhhhhhhc
Q 044568          146 ED--FVIDKRDKGYMAPECYKRTP-ISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFI-NRELNKLVR  221 (257)
Q Consensus       146 ~~--~~~~~~~~~~~aPE~~~~~~-~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  221 (257)
                      ..  .....+|+.|+|||.+.+.. ++.++||||||+++|||++|+.||.......   ........... .......+.
T Consensus       184 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  260 (360)
T 3e3p_A          184 PSEPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAG---QLHEIVRVLGCPSREVLRKLN  260 (360)
T ss_dssp             TTSCCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HHHHHHHHHCCCCHHHHHHHC
T ss_pred             CCCCcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChHH---HHHHHHHHcCCCCHHHHHhcc
Confidence            32  24456788899999987654 8999999999999999999999998652211   11111111000 000000000


Q ss_pred             C----------C---------CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          222 G----------T---------KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       222 ~----------~---------~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +          .         .........+.+++.+||+.||.+|| +.|+++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  314 (360)
T 3e3p_A          261 PSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALC  314 (360)
T ss_dssp             TTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             cchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhc
Confidence            0          0         11222467899999999999999999 999975

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=100.00  E-value=8.5e-36  Score=251.05  Aligned_cols=226  Identities=21%  Similarity=0.274  Sum_probs=169.0

Q ss_pred             ccccceeeeccc-CCCCCeeeccch--------hhhHHHHhHhhhccccccccCCceeeeceeeee-------------c
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW--------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL-------------T   61 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~--------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~-------------~   61 (257)
                      +.++.||+++.. ++..+++|....        .+|++.+.         ++.|+|++++.+.+..             .
T Consensus        17 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~---------~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~   87 (303)
T 1zy4_A           17 GAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLA---------SLNHQYVVRYYAAWLERRNFVKPMTAVKKK   87 (303)
T ss_dssp             CSSEEEEEEEETTTCCEEEEEEEEEEHHHHHHHHHHHHHHT---------TCCCTTBCCEEEEEEECCCCCC------CE
T ss_pred             CCcEEEEEEEEcCCCeEEEEEEEeccHHHHHHHHHHHHHHH---------hcCchHHHHHHHHHHhhcchhhhhcccccC
Confidence            578999999964 566778886542        33444443         7889999999887754             4


Q ss_pred             CceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeeccc
Q 044568           62 SVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLA  141 (257)
Q Consensus        62 ~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~  141 (257)
                      +..++||||+++|+|.+++.. ....+++.++..++.|++.||.|||++   +++|+||+|+||+++.++.++|+|||.+
T Consensus        88 ~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dlkp~Nil~~~~~~~kl~dfg~~  163 (303)
T 1zy4_A           88 STLFIQMEYCENGTLYDLIHS-ENLNQQRDEYWRLFRQILEALSYIHSQ---GIIHRDLKPMNIFIDESRNVKIGDFGLA  163 (303)
T ss_dssp             EEEEEEEECCCSCBHHHHHHH-SCGGGCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCCCCC
T ss_pred             CceEEEEecCCCCCHHHhhhc-cccccchHHHHHHHHHHHHHHHHHHhC---CeecccCCHHhEEEcCCCCEEEeeCcch
Confidence            678999999999999999985 456788899999999999999999999   9999999999999999999999999998


Q ss_pred             ccCCCC-----------------cccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHH
Q 044568          142 KLPNED-----------------FVIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIIL  203 (257)
Q Consensus       142 ~~~~~~-----------------~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~  203 (257)
                      ......                 .....+++.|+|||.+.+. .++.++||||||+++|||++   ||...   ..... 
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~---~~~~~-  236 (303)
T 1zy4_A          164 KNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTG---MERVN-  236 (303)
T ss_dssp             SCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSH---HHHHH-
T ss_pred             hhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCc---hhHHH-
Confidence            754321                 1344678889999999865 68999999999999999998   55421   00000 


Q ss_pred             HHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          204 TNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                        .... ...   ....-+...+...+..+.+++.+||+.||.+|| ++|+++
T Consensus       237 --~~~~-~~~---~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~  283 (303)
T 1zy4_A          237 --ILKK-LRS---VSIEFPPDFDDNKMKVEKKIIRLLIDHDPNKRPGARTLLN  283 (303)
T ss_dssp             --HHHH-HHS---TTCCCCTTCCTTTSHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             --HHHh-ccc---cccccCccccccchHHHHHHHHHHHhcCcccCcCHHHHhC
Confidence              0000 000   000111234455567789999999999999999 999986

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=100.00  E-value=6.6e-36  Score=253.88  Aligned_cols=224  Identities=18%  Similarity=0.197  Sum_probs=170.8

Q ss_pred             ccccceeeecccCCCCCeeeccch-----------hhhHHHHhHhhhcccccccc--CCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFNARNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIR--GGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~--h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||++...++..+++|....           .+|++.+.         ++.  |+|++++.+.+...+..++||| 
T Consensus        39 G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~---------~l~~~~~~iv~~~~~~~~~~~~~lv~e-  108 (313)
T 3cek_A           39 GGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLN---------KLQQHSDKIIRLYDYEITDQYIYMVME-  108 (313)
T ss_dssp             CSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHH---------HHGGGCTTBCCEEEEEECSSEEEEEEC-
T ss_pred             CCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHH---------hccccCCceEEEEEEeecCCEEEEEEe-
Confidence            578999999988888888886532           33444444         444  5999999999999999999999 


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc--
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF--  148 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~--  148 (257)
                      +.+++|.+++..  ...+++.++..++.|++.||.|||++   +++|+||+|+||++++ +.+||+|||++.......  
T Consensus       109 ~~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~~~~~~~~  182 (313)
T 3cek_A          109 CGNIDLNSWLKK--KKSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIVD-GMLKLIDFGIANQMQPDTTS  182 (313)
T ss_dssp             CCSEEHHHHHHH--CSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEET-TEEEECCCSSSCC-------
T ss_pred             cCCCcHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcccEEEEC-CeEEEeeccccccccCcccc
Confidence            557899999984  45789999999999999999999999   9999999999999975 799999999987543322  


Q ss_pred             ---ccccCCCCccCcccccC-----------CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhh
Q 044568          149 ---VIDKRDKGYMAPECYKR-----------TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINR  214 (257)
Q Consensus       149 ---~~~~~~~~~~aPE~~~~-----------~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~  214 (257)
                         ....+++.|+|||.+.+           ..++.++||||||+++|||++|+.||........  .....        
T Consensus       183 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~--~~~~~--------  252 (313)
T 3cek_A          183 VVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQIS--KLHAI--------  252 (313)
T ss_dssp             -------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHH--HHHHH--------
T ss_pred             ccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHHH--HHHHH--------
Confidence               33467889999999875           4678899999999999999999999975421110  00000        


Q ss_pred             hhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          215 ELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                        .........+......+.+++.+||+.||.+|| ++|+++
T Consensus       253 --~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~  292 (313)
T 3cek_A          253 --IDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLA  292 (313)
T ss_dssp             --HCTTSCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             --HhcccccCCcccchHHHHHHHHHHccCCcccCcCHHHHhc
Confidence              000011122333456789999999999999999 999975

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=100.00  E-value=1.5e-35  Score=257.75  Aligned_cols=232  Identities=16%  Similarity=0.115  Sum_probs=166.5

Q ss_pred             ccccceeeeccc-CCCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecC------cee
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTS------VSG   65 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~------~~~   65 (257)
                      +.++.||++... ++..+++|...           +.+|++.+.         .+.|+||+++.+.+...+      ..+
T Consensus        36 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~---------~l~hpniv~~~~~~~~~~~~~~~~~~~  106 (371)
T 2xrw_A           36 GAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMK---------CVNHKNIIGLLNVFTPQKSLEEFQDVY  106 (371)
T ss_dssp             CSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHH---------HCCCTTBCCEEEEECSCCSTTTCCEEE
T ss_pred             cCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHH---------hcCCCCccceEEeeccccccccccceE
Confidence            578999999854 45567787653           223333333         778999999999987654      679


Q ss_pred             EEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC
Q 044568           66 KIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN  145 (257)
Q Consensus        66 lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~  145 (257)
                      +||||++ |+|.+.+.    ..+++..+..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++....
T Consensus       107 lv~e~~~-~~l~~~~~----~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~  178 (371)
T 2xrw_A          107 IVMELMD-ANLCQVIQ----MELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAG  178 (371)
T ss_dssp             EEEECCS-EEHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCCCC-----
T ss_pred             EEEEcCC-CCHHHHHh----hccCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEEEeecccccc
Confidence            9999997 58988885    2489999999999999999999999   99999999999999999999999999987644


Q ss_pred             CC--cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhh---------hhh
Q 044568          146 ED--FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCF---------INR  214 (257)
Q Consensus       146 ~~--~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~---------~~~  214 (257)
                      ..  .....+|+.|+|||.+.+..++.++||||||+++|||++|+.||.......   .+........         ...
T Consensus       179 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~  255 (371)
T 2xrw_A          179 TSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHID---QWNKVIEQLGTPCPEFMKKLQP  255 (371)
T ss_dssp             -----------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH---HHHHHHC-CCCCCHHHHTTSCH
T ss_pred             cccccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHH---HHHHHHHHhCCCCHHHHHHhhh
Confidence            32  244578899999999999899999999999999999999999997652111   1111100000         000


Q ss_pred             hhh---------------hhhcCC------CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          215 ELN---------------KLVRGT------KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       215 ~~~---------------~~~~~~------~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ...               ......      .........+.+++.+||+.||.+|| ++|+++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~  318 (371)
T 2xrw_A          256 TVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQ  318 (371)
T ss_dssp             HHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             HHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhC
Confidence            000               000000      01122367899999999999999999 999975

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=100.00  E-value=1.6e-35  Score=262.58  Aligned_cols=174  Identities=18%  Similarity=0.235  Sum_probs=142.6

Q ss_pred             ccccceeeecccC-CCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeec-----CceeE
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT-----SVSGK   66 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~-----~~~~l   66 (257)
                      +.++.||++.... ++.+++|.+.           +.+|++.+.         +++|+||+++.+.+...     +..++
T Consensus        37 G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~---------~l~h~nIv~l~~~~~~~~~~~~~~~~l  107 (432)
T 3n9x_A           37 GSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILN---------RLKSDYIIRLYDLIIPDDLLKFDELYI  107 (432)
T ss_dssp             ETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHH---------HCCCTTBCCEEEECCCSCTTTCCCEEE
T ss_pred             cCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHH---------HcCCCCcceEEEEEecCCCCcCCeEEE
Confidence            5688999998654 4557888653           234454444         78899999999998876     57899


Q ss_pred             EEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC
Q 044568           67 IERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE  146 (257)
Q Consensus        67 V~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~  146 (257)
                      ||||++ |+|.+++.  ....+++..+..++.|++.||.|||++   +|+||||||+||+++.++.+||+|||+++....
T Consensus       108 v~e~~~-~~L~~~~~--~~~~l~~~~~~~i~~qil~aL~~LH~~---givHrDlkp~NILl~~~~~~kL~DFGla~~~~~  181 (432)
T 3n9x_A          108 VLEIAD-SDLKKLFK--TPIFLTEEHIKTILYNLLLGENFIHES---GIIHRDLKPANCLLNQDCSVKVCDFGLARTINS  181 (432)
T ss_dssp             EEECCS-EEHHHHHH--SSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEEC--
T ss_pred             EEecCC-cCHHHHHh--ccCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHeEECCCCCEEEccCCCcccccc
Confidence            999996 59999997  556799999999999999999999999   999999999999999999999999999976432


Q ss_pred             C-------------------------cccccCCCCccCcccc-cCCCCCccccchhHHHHHHHHHhcCCCCC
Q 044568          147 D-------------------------FVIDKRDKGYMAPECY-KRTPISVKADVYGYGIVLLETICCRKNME  192 (257)
Q Consensus       147 ~-------------------------~~~~~~~~~~~aPE~~-~~~~~~~~~Di~s~G~~l~el~~g~~pf~  192 (257)
                      .                         .....+|+.|+|||.+ ....++.++||||+||++|||++|..||.
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~  253 (432)
T 3n9x_A          182 EKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHI  253 (432)
T ss_dssp             -----------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTC
T ss_pred             cccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhcccccc
Confidence            2                         2455778899999986 45568999999999999999998555443

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=100.00  E-value=1.1e-35  Score=258.71  Aligned_cols=232  Identities=16%  Similarity=0.151  Sum_probs=172.1

Q ss_pred             ccccceeeeccc-CCCCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCce------e
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVS------G   65 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~------~   65 (257)
                      +.++.||++... ++..+++|....           .+|++.+.         ++.|+|++++.+.+...+..      +
T Consensus        53 G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~---------~l~h~niv~~~~~~~~~~~~~~~~~~~  123 (371)
T 4exu_A           53 GAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLK---------HMQHENVIGLLDVFTPASSLRNFYDFY  123 (371)
T ss_dssp             CSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHH---------HCCCTTBCCCSEEECSCSSSTTCCCCE
T ss_pred             CCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHH---------hcCCCCchhhhhheeccCCcccceeEE
Confidence            678999999855 456677876542           23444444         78899999999999877655      9


Q ss_pred             EEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC
Q 044568           66 KIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN  145 (257)
Q Consensus        66 lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~  145 (257)
                      +||||+. ++|.+.+.    ..+++.++..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++....
T Consensus       124 lv~e~~~-~~l~~~~~----~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~  195 (371)
T 4exu_A          124 LVMPFMQ-TDLQKIMG----MEFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGLARHAD  195 (371)
T ss_dssp             EEEECCC-EEHHHHTT----SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECSTTCC----
T ss_pred             EEEcccc-ccHHHHhh----cCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCcCHHHeEECCCCCEEEEecCcccccc
Confidence            9999997 68988874    3499999999999999999999999   99999999999999999999999999998766


Q ss_pred             CCcccccCCCCccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhh----------h-
Q 044568          146 EDFVIDKRDKGYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFI----------N-  213 (257)
Q Consensus       146 ~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~----------~-  213 (257)
                      .......+|+.|+|||.+.+ ..++.++||||||+++|+|++|+.||.......   ...........          . 
T Consensus       196 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~  272 (371)
T 4exu_A          196 AEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLD---QLTQILKVTGVPGTEFVQKLNDK  272 (371)
T ss_dssp             ----CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHH---HHHHHHHHHCCCCHHHHTTCSCH
T ss_pred             cCcCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHH---HHHHHHHHhCCCcHHHHHHhhhh
Confidence            66666788999999999887 678999999999999999999999997652111   11111100000          0 


Q ss_pred             ---hhhhhhhcCC-----CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          214 ---RELNKLVRGT-----KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       214 ---~~~~~~~~~~-----~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                         .....+....     .......+.+.+++.+||+.||++|| ++|+++
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  323 (371)
T 4exu_A          273 AAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT  323 (371)
T ss_dssp             HHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             hhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhc
Confidence               0000111111     01122357899999999999999999 999975

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=100.00  E-value=4.3e-36  Score=256.12  Aligned_cols=218  Identities=19%  Similarity=0.222  Sum_probs=175.5

Q ss_pred             cccccceeeecc-cCCCCCeeeccc---------------hhhhHHHHhHhhhccccccc--cCCceeeeceeeeecCce
Q 044568            3 CTKLSNFYRSSF-NARNSPWISRVS---------------WTADIEVLSVAMRGSKCTRI--RGGLLLNVPVRAKLTSVS   64 (257)
Q Consensus         3 ~~~~~~~y~~~~-~~~~~~~i~~~~---------------~~~~~~~~~~~~~~~~~~~~--~h~~i~~~~~~~~~~~~~   64 (257)
                      .+.++.||++.. .++..+++|...               +.+|++.+.         ++  .|+|++++.+.+...+..
T Consensus        53 ~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~---------~l~~~~~~i~~~~~~~~~~~~~  123 (320)
T 3a99_A           53 SGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLK---------KVSSGFSGVIRLLDWFERPDSF  123 (320)
T ss_dssp             SSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHH---------HHCSSSCSBCCEEEEEECSSEE
T ss_pred             eCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHH---------hhccCCCCceEEEEEEecCCcE
Confidence            357899999985 455667777643               234555555         44  469999999999999999


Q ss_pred             eEEEeecCC-CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeC-CCCceEEeeecccc
Q 044568           65 GKIERPVRN-GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD-EFWTAKILDFGLAK  142 (257)
Q Consensus        65 ~lV~E~~~~-gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~-~~~~~kl~dfg~~~  142 (257)
                      ++|||++.+ ++|.+++..  ...+++..+..++.|++.||.|||++   +++||||+|+||+++ +++.+||+|||++.
T Consensus       124 ~lv~e~~~~~~~L~~~l~~--~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~kL~Dfg~~~  198 (320)
T 3a99_A          124 VLILERPEPVQDLFDFITE--RGALQEELARSFFWQVLEAVRHCHNC---GVLHRDIKDENILIDLNRGELKLIDFGSGA  198 (320)
T ss_dssp             EEEEECCSSEEEHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred             EEEEEcCCCCccHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHHHC---CcEeCCCCHHHEEEeCCCCCEEEeeCcccc
Confidence            999999976 899999973  46789999999999999999999999   999999999999998 77899999999987


Q ss_pred             cCCCC-cccccCCCCccCcccccCCCC-CccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhh
Q 044568          143 LPNED-FVIDKRDKGYMAPECYKRTPI-SVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLV  220 (257)
Q Consensus       143 ~~~~~-~~~~~~~~~~~aPE~~~~~~~-~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (257)
                      ..... .....+|+.|+|||.+.+..+ +.++||||||+++|||++|+.||....    ..              .   .
T Consensus       199 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~----~~--------------~---~  257 (320)
T 3a99_A          199 LLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE----EI--------------I---R  257 (320)
T ss_dssp             ECCSSCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH----HH--------------H---H
T ss_pred             ccccccccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChh----hh--------------h---c
Confidence            65433 344568889999999887665 688999999999999999999996330    00              0   0


Q ss_pred             cCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          221 RGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       221 ~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .....+...++.+.+++.+||+.||++|| ++|+++
T Consensus       258 ~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~  293 (320)
T 3a99_A          258 GQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQN  293 (320)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             ccccccccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            01112233456789999999999999999 999986

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.4e-35  Score=262.92  Aligned_cols=226  Identities=16%  Similarity=0.144  Sum_probs=166.4

Q ss_pred             ccccceeeecccCCCCCeeeccc------hhhhHHHHhHhhhccccccc-cCCceeeeceeeeecCceeEEEeecCCCCH
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS------WTADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVSGKIERPVRNGSL   76 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~------~~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL   76 (257)
                      +.++.||.....++..++||...      ..+|++.+.         ++ .|+||+++.+.+...+..+||||||+ |+|
T Consensus        35 G~~G~V~~~~~~~~~~vAvK~~~~~~~~~~~~E~~~l~---------~l~~HpnIv~l~~~~~~~~~~~lv~E~~~-g~L  104 (432)
T 3p23_A           35 GAEGTIVYRGMFDNRDVAVKRILPECFSFADREVQLLR---------ESDEHPNVIRYFCTEKDRQFQYIAIELCA-ATL  104 (432)
T ss_dssp             CGGGCEEEEEESSSSEEEEEEECTTTEEECHHHHHHHH---------HSCCCTTBCCEEEEEEETTEEEEEEECCS-EEH
T ss_pred             CcCEEEEEEEEeCCeEEEEEEECHHHHHHHHHHHHHHH---------hccCCCCcCeEEEEEecCCEEEEEEECCC-CCH
Confidence            45565433344567788998753      356666665         55 79999999999999999999999996 699


Q ss_pred             HHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCC-----CCceEEeeecccccCCCC----
Q 044568           77 TDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE-----FWTAKILDFGLAKLPNED----  147 (257)
Q Consensus        77 ~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~-----~~~~kl~dfg~~~~~~~~----  147 (257)
                      .+++.. ....+++.++..++.|++.||.|||++   +|+||||||+||+++.     ...+||+|||++......    
T Consensus       105 ~~~l~~-~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~~  180 (432)
T 3p23_A          105 QEYVEQ-KDFAHLGLEPITLLQQTTSGLAHLHSL---NIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSF  180 (432)
T ss_dssp             HHHHHS-SSCCCCSSCHHHHHHHHHHHHHHHHHT---TCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC-------
T ss_pred             HHHHHh-cCCCccchhHHHHHHHHHHHHHHHHHC---cCEeCCCCHHHEEEecCCCCCceeEEEecccceeeccCCCcce
Confidence            999985 444455566789999999999999999   9999999999999943     346889999998765422    


Q ss_pred             --cccccCCCCccCccccc---CCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc
Q 044568          148 --FVIDKRDKGYMAPECYK---RTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR  221 (257)
Q Consensus       148 --~~~~~~~~~~~aPE~~~---~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (257)
                        .....+|+.|+|||.+.   ...++.++|||||||++|||++ |..||..........        ....    ...+
T Consensus       181 ~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~~~~--------~~~~----~~~~  248 (432)
T 3p23_A          181 SRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQANI--------LLGA----CSLD  248 (432)
T ss_dssp             -----CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHHHHH--------HTTC----CCCT
T ss_pred             eeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHHHHH--------Hhcc----CCcc
Confidence              23456899999999997   3557789999999999999999 999996442111100        0000    0001


Q ss_pred             CCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          222 GTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       222 ~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ...........+.+++.+||+.||.+|| ++|+++
T Consensus       249 ~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~  283 (432)
T 3p23_A          249 CLHPEKHEDVIARELIEKMIAMDPQKRPSAKHVLK  283 (432)
T ss_dssp             TSCTTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             ccCccccccHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence            1112334456788999999999999999 999985

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=100.00  E-value=8.1e-36  Score=253.09  Aligned_cols=221  Identities=19%  Similarity=0.201  Sum_probs=170.8

Q ss_pred             ccccceeeeccc-CCCCCeeeccch---------------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEE
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW---------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~---------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV   67 (257)
                      +.++.||++... ++..+++|....               .+|++.+...     .....|+||+++.+.+...+..++|
T Consensus        42 G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l-----~~~~~h~~i~~~~~~~~~~~~~~~v  116 (312)
T 2iwi_A           42 GGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKV-----GAGGGHPGVIRLLDWFETQEGFMLV  116 (312)
T ss_dssp             ETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHH-----HSSCCCSSBCCEEEEC-----CEEE
T ss_pred             CCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhh-----cccCCCCCeeeEEEEEecCCeEEEE
Confidence            578999999864 455677876532               2344444400     0122799999999999999999999


Q ss_pred             Eee-cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeC-CCCceEEeeecccccCC
Q 044568           68 ERP-VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD-EFWTAKILDFGLAKLPN  145 (257)
Q Consensus        68 ~E~-~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~-~~~~~kl~dfg~~~~~~  145 (257)
                      ||+ +.+++|.+++..  ...+++..+..++.|++.||.|||++   +++|+||+|+||+++ .++.++|+|||++....
T Consensus       117 ~e~~~~~~~L~~~l~~--~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~kl~dfg~~~~~~  191 (312)
T 2iwi_A          117 LERPLPAQDLFDYITE--KGPLGEGPSRCFFGQVVAAIQHCHSR---GVVHRDIKDENILIDLRRGCAKLIDFGSGALLH  191 (312)
T ss_dssp             EECCSSEEEHHHHHHH--HCSCCHHHHHHHHHHHHHHHHHHHHH---TEECCCCSGGGEEEETTTTEEEECCCSSCEECC
T ss_pred             EEecCCCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChhhEEEeCCCCeEEEEEcchhhhcc
Confidence            999 788999999974  45699999999999999999999999   999999999999998 78899999999987544


Q ss_pred             C-CcccccCCCCccCcccccCCCC-CccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC
Q 044568          146 E-DFVIDKRDKGYMAPECYKRTPI-SVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  223 (257)
Q Consensus       146 ~-~~~~~~~~~~~~aPE~~~~~~~-~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (257)
                      . ......++..|+|||.+.+..+ +.++||||||+++|||++|+.||...    ...              .   ....
T Consensus       192 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~----~~~--------------~---~~~~  250 (312)
T 2iwi_A          192 DEPYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERD----QEI--------------L---EAEL  250 (312)
T ss_dssp             SSCBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH----HHH--------------H---HTCC
T ss_pred             cCcccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCCh----HHH--------------h---hhcc
Confidence            3 3345567889999999887665 45899999999999999999999633    000              0   0111


Q ss_pred             CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          224 KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       224 ~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ..+......+.+++.+||+.||++|| ++|+++
T Consensus       251 ~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~  283 (312)
T 2iwi_A          251 HFPAHVSPDCCALIRRCLAPKPSSRPSLEEILL  283 (312)
T ss_dssp             CCCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             CCcccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            23344556789999999999999999 999986

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=100.00  E-value=8.5e-36  Score=258.64  Aligned_cols=236  Identities=19%  Similarity=0.219  Sum_probs=174.4

Q ss_pred             ccccceeeeccc-CCCCCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeec-----CceeEE
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT-----SVSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~-----~~~~lV   67 (257)
                      +.++.||++... ++..+++|...          +.+|++.+.         ++.|+||+++.+.+...     ...++|
T Consensus        38 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~---------~l~h~niv~~~~~~~~~~~~~~~~~~iv  108 (364)
T 3qyz_A           38 GAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILL---------RFRHENIIGINDIIRAPTIEQMKDVYIV  108 (364)
T ss_dssp             CSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHH---------HCCCTTBCCCCEEECCSSTTTCCCEEEE
T ss_pred             CCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHH---------hcCCCCCccceeEEecCCccccceEEEE
Confidence            578999999865 44557787654          234444444         78899999999988765     368999


Q ss_pred             EeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC
Q 044568           68 ERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED  147 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~  147 (257)
                      |||++ |+|.+++..   ..+++.++..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++......
T Consensus       109 ~e~~~-~~L~~~l~~---~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~  181 (364)
T 3qyz_A          109 QDLME-TDLYKLLKT---QHLSNDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLKICDFGLARVADPD  181 (364)
T ss_dssp             EECCS-EEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECCGG
T ss_pred             EcccC-cCHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCChHhEEECCCCCEEEEeCcceEecCCC
Confidence            99997 599999964   4699999999999999999999999   9999999999999999999999999998765432


Q ss_pred             c------ccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHH-------Hhhhh
Q 044568          148 F------VIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVY-------KCFIN  213 (257)
Q Consensus       148 ~------~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~-------~~~~~  213 (257)
                      .      ....+|+.|+|||.+.+. .++.++||||+|+++|||++|+.||...........+.....       .....
T Consensus       182 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  261 (364)
T 3qyz_A          182 HDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIIN  261 (364)
T ss_dssp             GCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGHHHHHHHHHCSCCHHHHHTCCC
T ss_pred             CCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhhh
Confidence            2      334778899999987654 589999999999999999999999976532221111111000       00000


Q ss_pred             hhh----hhhhcCCCC-----CHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          214 REL----NKLVRGTKV-----DKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       214 ~~~----~~~~~~~~~-----~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ...    .........     .......+.+++.+||+.||++|| ++|+++
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  313 (364)
T 3qyz_A          262 LKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALA  313 (364)
T ss_dssp             HHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             hhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            000    000000111     122346789999999999999999 999975

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=100.00  E-value=1.5e-35  Score=251.53  Aligned_cols=234  Identities=15%  Similarity=0.171  Sum_probs=168.8

Q ss_pred             cccccceeeecccC-CCCCeeeccch---------hhhHHHHhHhhhccccccccCCceeeeceeee-------------
Q 044568            3 CTKLSNFYRSSFNA-RNSPWISRVSW---------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAK-------------   59 (257)
Q Consensus         3 ~~~~~~~y~~~~~~-~~~~~i~~~~~---------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~-------------   59 (257)
                      .+.++.||++.... +..+++|....         .+|++.+.         ++.|+|++++.+.+.             
T Consensus        21 ~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~---------~l~h~~iv~~~~~~~~~~~~~~~~~~~~   91 (320)
T 2i6l_A           21 CGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIR---------RLDHDNIVKVFEILGPSGSQLTDDVGSL   91 (320)
T ss_dssp             -----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHH---------TCCCTTBCCEEEEECTTSCBCCC----C
T ss_pred             cCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHH---------hcCCCCeeEEEEeccccccccccccccc
Confidence            35789999999775 66678886542         33444444         788999999987763             


Q ss_pred             -ecCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeC-CCCceEEee
Q 044568           60 -LTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD-EFWTAKILD  137 (257)
Q Consensus        60 -~~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~-~~~~~kl~d  137 (257)
                       ..+..++||||++ |+|.+++.   ...+++..+..++.|++.||.|||++   +++|+||||+||+++ .++.+||+|
T Consensus        92 ~~~~~~~lv~e~~~-~~L~~~~~---~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~kl~D  164 (320)
T 2i6l_A           92 TELNSVYIVQEYME-TDLANVLE---QGPLLEEHARLFMYQLLRGLKYIHSA---NVLHRDLKPANLFINTEDLVLKIGD  164 (320)
T ss_dssp             CSCSEEEEEEECCS-EEHHHHHT---TCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTTEEEECC
T ss_pred             cccCceeEEeeccC-CCHHHHhh---cCCccHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCeEEEcc
Confidence             4467899999997 69999995   45799999999999999999999999   999999999999997 567999999


Q ss_pred             ecccccCCCC------cccccCCCCccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHh
Q 044568          138 FGLAKLPNED------FVIDKRDKGYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKC  210 (257)
Q Consensus       138 fg~~~~~~~~------~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~  210 (257)
                      ||.+......      .....++..|+|||.+.. ..++.++||||||+++|||++|+.||.......   .........
T Consensus       165 fg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~---~~~~~~~~~  241 (320)
T 2i6l_A          165 FGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELE---QMQLILESI  241 (320)
T ss_dssp             CTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HHHHHHHHS
T ss_pred             CccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHH---HHHHHHHhc
Confidence            9998754321      233456788999998875 678999999999999999999999998652211   111111000


Q ss_pred             --hhhhhhhh------------hhcCC----CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          211 --FINRELNK------------LVRGT----KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       211 --~~~~~~~~------------~~~~~----~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                        ........            ...+.    ......+..+.+++.+||+.||++|| ++|+++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  305 (320)
T 2i6l_A          242 PVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALS  305 (320)
T ss_dssp             CCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             CCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhC
Confidence              00000000            00000    01123457799999999999999999 999975

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=100.00  E-value=1.6e-35  Score=255.75  Aligned_cols=233  Identities=16%  Similarity=0.151  Sum_probs=172.1

Q ss_pred             cccccceeeeccc-CCCCCeeeccch-----------hhhHHHHhHhhhccccccccCCceeeeceeeeecCc------e
Q 044568            3 CTKLSNFYRSSFN-ARNSPWISRVSW-----------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSV------S   64 (257)
Q Consensus         3 ~~~~~~~y~~~~~-~~~~~~i~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~------~   64 (257)
                      .+.++.||++... ++..+++|...-           .+|++.+.         ++.|+|++++.+.+...+.      .
T Consensus        34 ~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~~~~~~~~~~~~  104 (353)
T 3coi_A           34 SGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLK---------HMQHENVIGLLDVFTPASSLRNFYDF  104 (353)
T ss_dssp             ECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHH---------HCCCTTBCCCSEEECSCSSGGGCCCC
T ss_pred             cCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHH---------hcCCCCcccHhheEecccccccceeE
Confidence            3678999999865 466778886532           23333433         7789999999999887654      4


Q ss_pred             eEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccC
Q 044568           65 GKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLP  144 (257)
Q Consensus        65 ~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~  144 (257)
                      ++||||+. |+|.+++.    ..+++.++..++.|++.||.|||++   +++|+||+|+||+++.++.+||+|||++...
T Consensus       105 ~lv~e~~~-~~l~~~~~----~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~  176 (353)
T 3coi_A          105 YLVMPFMQ-TDLQKIMG----LKFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGLARHA  176 (353)
T ss_dssp             EEEEECCS-EEGGGTTT----SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTCCEEECSTTCTTC-
T ss_pred             EEEecccc-CCHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEeECCCCcEEEeecccccCC
Confidence            99999997 68888874    3499999999999999999999999   9999999999999999999999999999876


Q ss_pred             CCCcccccCCCCccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhh----------hh
Q 044568          145 NEDFVIDKRDKGYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCF----------IN  213 (257)
Q Consensus       145 ~~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~----------~~  213 (257)
                      ........+|+.|+|||.+.+ ..++.++||||||+++|||++|+.||.......   .+........          ..
T Consensus       177 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~  253 (353)
T 3coi_A          177 DAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLD---QLTQILKVTGVPGTEFVQKLND  253 (353)
T ss_dssp             -------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHH---HHHHHHHHHCBCCHHHHTTCSC
T ss_pred             CCCccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH---HHHHHHHHhCCCCHHHHHHHhh
Confidence            655566678999999999876 578999999999999999999999997652111   1111111000          00


Q ss_pred             hh----hhhhhcC-----CCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          214 RE----LNKLVRG-----TKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       214 ~~----~~~~~~~-----~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ..    ...+...     ..........+.+++.+||+.||++|| ++|+++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~  305 (353)
T 3coi_A          254 KAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT  305 (353)
T ss_dssp             HHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             HHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence            00    0000000     012234567899999999999999999 999975

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=100.00  E-value=1.2e-35  Score=249.30  Aligned_cols=226  Identities=19%  Similarity=0.207  Sum_probs=174.3

Q ss_pred             ccccceeeeccc-CCCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      +.++.||+++.. ++..+++|...           +.+|++.+.         ++.|+|++++.+.+...+..++||||+
T Consensus        33 G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~---------~l~h~~i~~~~~~~~~~~~~~lv~e~~  103 (287)
T 2wei_A           33 GSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLK---------KLDHPNIMKLFEILEDSSSFYIVGELY  103 (287)
T ss_dssp             ETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHH---------TCCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred             CCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHH---------hccCCCccEEEEEEeCCCeEEEEEEcc
Confidence            568899999976 56667777643           234555554         788999999999999999999999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCC---CceEEeeecccccCCCC-
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF---WTAKILDFGLAKLPNED-  147 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~---~~~kl~dfg~~~~~~~~-  147 (257)
                      ++++|.+.+..  ...+++.++..++.|++.||.|||++   +++|+||+|+||+++.+   +.+||+|||++...... 
T Consensus       104 ~~~~L~~~l~~--~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~~~  178 (287)
T 2wei_A          104 TGGELFDEIIK--RKRFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNT  178 (287)
T ss_dssp             CSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBCCCS
T ss_pred             CCCCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCChhhEEEecCCCcccEEEeccCcceeecCCC
Confidence            99999999873  45699999999999999999999999   99999999999999754   46999999998754332 


Q ss_pred             -cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCC
Q 044568          148 -FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVD  226 (257)
Q Consensus       148 -~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (257)
                       .....+++.|+|||.+.+ .++.++||||||+++|+|++|..||.....   ........     ....   .......
T Consensus       179 ~~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~---~~~~~~~~-----~~~~---~~~~~~~  246 (287)
T 2wei_A          179 KMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNE---YDILKRVE-----TGKY---AFDLPQW  246 (287)
T ss_dssp             SCSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHH-----HCCC---CCCSGGG
T ss_pred             ccccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCCCH---HHHHHHHH-----cCCC---CCCchhh
Confidence             233356778999998865 488999999999999999999999975421   11111110     0000   0000111


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          227 KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       227 ~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ...+..+.+++.+||+.||++|| +.|+++
T Consensus       247 ~~~~~~~~~li~~~l~~dp~~Rps~~ell~  276 (287)
T 2wei_A          247 RTISDDAKDLIRKMLTFHPSLRITATQCLE  276 (287)
T ss_dssp             TTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             hhcCHHHHHHHHHHcccChhhCcCHHHHhc
Confidence            23356789999999999999999 999986

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=100.00  E-value=2.1e-35  Score=262.03  Aligned_cols=228  Identities=17%  Similarity=0.185  Sum_probs=165.7

Q ss_pred             ccccceeeecccCCCCCeeeccch------hhhHHHHhHhhhccccccc-cCCceeeeceeeeecCceeEEEeecCCCCH
Q 044568            4 TKLSNFYRSSFNARNSPWISRVSW------TADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVSGKIERPVRNGSL   76 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~~------~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL   76 (257)
                      +.++.||.....++..+++|....      .+|++.+.         ++ .|+||+++.+.+...+..++|||||. |+|
T Consensus        26 G~~g~V~~~~~~~g~~vAvK~~~~~~~~~~~~E~~~l~---------~l~~HpnIv~~~~~~~~~~~~~lv~E~~~-gsL   95 (434)
T 2rio_A           26 GSSGTVVFQGSFQGRPVAVKRMLIDFCDIALMEIKLLT---------ESDDHPNVIRYYCSETTDRFLYIALELCN-LNL   95 (434)
T ss_dssp             CSTTCEEEEEESSSSEEEEEEEEGGGHHHHHHHHHHHH---------HHTTSTTBCCEEEEEECSSEEEEEECCCS-EEH
T ss_pred             CCCeEEEEEEEECCeEEEEEEEcHHHHHHHHHHHHHHH---------hccCCCCcCeEEEEEecCCeEEEEEecCC-CCH
Confidence            467777655566788899997642      23444433         33 79999999999999999999999996 699


Q ss_pred             HHHHhccCCCC-----CCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCC-------------CceEEeee
Q 044568           77 TDIIFCSAERN-----PYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF-------------WTAKILDF  138 (257)
Q Consensus        77 ~~~l~~~~~~~-----l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~-------------~~~kl~df  138 (257)
                      .+++.......     .++..+..++.|++.||.|||++   +|+||||||+||+++.+             +.+||+||
T Consensus        96 ~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~DF  172 (434)
T 2rio_A           96 QDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSL---KIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDF  172 (434)
T ss_dssp             HHHHHTC------------CCHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECCC
T ss_pred             HHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCcccccccccCCCceEEEEccc
Confidence            99997532111     12334578999999999999999   99999999999999653             48999999


Q ss_pred             cccccCCCCc-------ccccCCCCccCcccccC-------CCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHH
Q 044568          139 GLAKLPNEDF-------VIDKRDKGYMAPECYKR-------TPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIIL  203 (257)
Q Consensus       139 g~~~~~~~~~-------~~~~~~~~~~aPE~~~~-------~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~  203 (257)
                      |++.......       ....+|+.|+|||.+.+       ..++.++|||||||++|||++ |..||........    
T Consensus       173 G~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~~----  248 (434)
T 2rio_A          173 GLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRES----  248 (434)
T ss_dssp             TTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTHHH----
T ss_pred             ccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhhHH----
Confidence            9988654322       23468999999999975       568899999999999999999 9999965422111    


Q ss_pred             HHHHHHhhhhhhhhhhhc-CCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          204 TNWVYKCFINRELNKLVR-GTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                       .+.....      ..-. ...........+.+++.+||+.||.+|| +.|+++
T Consensus       249 -~i~~~~~------~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  295 (434)
T 2rio_A          249 -NIIRGIF------SLDEMKCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLR  295 (434)
T ss_dssp             -HHHHTCC------CCCCCTTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             -HHhcCCC------CcccccccccccchHHHHHHHHHHhhCChhhCCCHHHHHh
Confidence             1100000      0000 1122455678899999999999999999 999975

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=100.00  E-value=2.5e-35  Score=254.06  Aligned_cols=236  Identities=17%  Similarity=0.201  Sum_probs=173.3

Q ss_pred             ccccceeeeccc-CCCCCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeec-----CceeEE
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT-----SVSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~-----~~~~lV   67 (257)
                      +.++.||+++.. ++..+++|...          +.+|++.+.         ++.|+|++++.+.+...     ...++|
T Consensus        22 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~---------~l~h~~iv~~~~~~~~~~~~~~~~~~lv   92 (353)
T 2b9h_A           22 GAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILK---------HFKHENIITIFNIQRPDSFENFNEVYII   92 (353)
T ss_dssp             CSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHH---------HCCCTTBCCEEEECCCSCSTTCCCEEEE
T ss_pred             CCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHH---------hCcCCCcCCeeeeecccccCccceEEEE
Confidence            578999999976 45567788654          224444444         78899999999887754     678999


Q ss_pred             EeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC
Q 044568           68 ERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED  147 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~  147 (257)
                      |||+. |+|.+++..   ..+++..+..++.|++.||.|||++   +++||||||+||+++.++.+||+|||++......
T Consensus        93 ~e~~~-~~L~~~~~~---~~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~  165 (353)
T 2b9h_A           93 QELMQ-TDLHRVIST---QMLSDDHIQYFIYQTLRAVKVLHGS---NVIHRDLKPSNLLINSNCDLKVCDFGLARIIDES  165 (353)
T ss_dssp             ECCCS-EEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECC--
T ss_pred             EeccC-ccHHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEcCCCcEEEEecccccccccc
Confidence            99997 699999964   5699999999999999999999999   9999999999999999999999999998754322


Q ss_pred             c-------------ccccCCCCccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHH----
Q 044568          148 F-------------VIDKRDKGYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYK----  209 (257)
Q Consensus       148 ~-------------~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~----  209 (257)
                      .             ....+|+.|+|||.+.. ..++.++||||||+++|||++|+.||..................    
T Consensus       166 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~  245 (353)
T 2b9h_A          166 AADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIFGIIGTPHSD  245 (353)
T ss_dssp             --------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCST
T ss_pred             cccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCchh
Confidence            1             22356888999998765 67899999999999999999999999765221110000000000    


Q ss_pred             ----hhhhhhhhhhhcC----C-----CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          210 ----CFINRELNKLVRG----T-----KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       210 ----~~~~~~~~~~~~~----~-----~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                          .............    .     ......+..+.+++.+||+.||++|| ++|+++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  305 (353)
T 2b9h_A          246 NDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALE  305 (353)
T ss_dssp             TTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             ccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence                0000000011000    0     01123456789999999999999999 999985

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=100.00  E-value=7e-35  Score=247.55  Aligned_cols=234  Identities=16%  Similarity=0.152  Sum_probs=162.9

Q ss_pred             ccccceeeeccc-CCCCCeeeccchh----hhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHH
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSWT----ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTD   78 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~   78 (257)
                      +.++.||+++.. ++..+++|.....    ...+.+. .. ......+.|+||+++.+.+...+..++||||+ ++.+..
T Consensus        36 G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~-~~-~~~~~~~~h~~i~~~~~~~~~~~~~~lv~e~~-~~~~~~  112 (318)
T 2dyl_A           36 GTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILM-DL-DVVLKSHDCPYIVQCFGTFITNTDVFIAMELM-GTCAEK  112 (318)
T ss_dssp             ----CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHH-HH-HHHHHTTTCTTBCCEEEEEECSSEEEEEECCC-SEEHHH
T ss_pred             cCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHH-HH-HHHHHhcCCCceeeEEEEEecCCcEEEEEecc-CCcHHH
Confidence            568899999976 5667788876431    1111111 00 01233678999999999999999999999999 456655


Q ss_pred             HHhccCCCCCCHHHHHHHHHHHHHHHHHHhh-CCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC--cccccCCC
Q 044568           79 IIFCSAERNPYWNQRVRIALDVAKGILYLHD-ECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED--FVIDKRDK  155 (257)
Q Consensus        79 ~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~--~~~~~~~~  155 (257)
                      +... ....+++..+..++.|++.||.|||+ +   +++|+||+|+||+++.++.+||+|||++......  .....+++
T Consensus       113 l~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~---~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~  188 (318)
T 2dyl_A          113 LKKR-MQGPIPERILGKMTVAIVKALYYLKEKH---GVIHRDVKPSNILLDERGQIKLCDFGISGRLVDDKAKDRSAGCA  188 (318)
T ss_dssp             HHHH-HTSCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCGGGEEECTTSCEEECCCTTC--------------CC
T ss_pred             HHHH-hccCCCHHHHHHHHHHHHHHHHHHHhhC---CEEeCCCCHHHEEECCCCCEEEEECCCchhccCCccccccCCCc
Confidence            5543 45679999999999999999999998 7   8999999999999999999999999998654322  23446788


Q ss_pred             CccCccccc-----CCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHH
Q 044568          156 GYMAPECYK-----RTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNL  230 (257)
Q Consensus       156 ~~~aPE~~~-----~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (257)
                      .|+|||.+.     ...++.++||||||+++|||++|+.||.......  ......         ..............+
T Consensus       189 ~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~--~~~~~~---------~~~~~~~~~~~~~~~  257 (318)
T 2dyl_A          189 AYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDF--EVLTKV---------LQEEPPLLPGHMGFS  257 (318)
T ss_dssp             TTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHH--HHHHHH---------HHSCCCCCCSSSCCC
T ss_pred             cccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCccH--HHHHHH---------hccCCCCCCccCCCC
Confidence            999999985     4567899999999999999999999997532111  111110         000000001112345


Q ss_pred             HHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          231 ENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       231 ~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ..+.+++.+||+.||.+|| ++|+++
T Consensus       258 ~~l~~li~~~l~~dp~~Rps~~~ll~  283 (318)
T 2dyl_A          258 GDFQSFVKDCLTKDHRKRPKYNKLLE  283 (318)
T ss_dssp             HHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             HHHHHHHHHHccCChhHCcCHHHHhh
Confidence            6789999999999999999 999975

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=100.00  E-value=8.8e-35  Score=248.38  Aligned_cols=233  Identities=19%  Similarity=0.208  Sum_probs=158.4

Q ss_pred             ccccceeeeccc-CCCCCeeeccchh---hhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHH
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSWT---ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDI   79 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~   79 (257)
                      +.++.||++... +++.+++|.....   ...+...... ......+.|+||+++.+.+...+..++||||+++ +|.++
T Consensus        33 G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~-~~~~~~~~h~niv~~~~~~~~~~~~~lv~e~~~~-~l~~~  110 (327)
T 3aln_A           33 GAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDL-DVVMRSSDCPYIVQFYGALFREGDCWICMELMST-SFDKF  110 (327)
T ss_dssp             CSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHH-HHHHSSCCCTTBCCEEEEEECSSEEEEEECCCSE-EHHHH
T ss_pred             CCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHH-HHHHHcCCCCcEeeeeeEEEeCCceEEEEeecCC-ChHHH
Confidence            578999999975 5666788865421   1111111011 1123367899999999999999999999999985 88887


Q ss_pred             Hhc---cCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc--ccccCC
Q 044568           80 IFC---SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF--VIDKRD  154 (257)
Q Consensus        80 l~~---~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~--~~~~~~  154 (257)
                      +..   .....+++..+..++.|++.||.|||++.  +++|+||+|+||+++.++.+||+|||++.......  ....++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~--~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~gt  188 (327)
T 3aln_A          111 YKYVYSVLDDVIPEEILGKITLATVKALNHLKENL--KIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSIAKTRDAGC  188 (327)
T ss_dssp             HHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHH--SCCCSCCCGGGEEEETTTEEEECCCSSSCC-------------
T ss_pred             HHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccC--CEeECCCCHHHEEEcCCCCEEEccCCCceecccccccccCCCC
Confidence            752   13677999999999999999999999952  89999999999999999999999999987543322  333688


Q ss_pred             CCccCcccc----cCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC------C
Q 044568          155 KGYMAPECY----KRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT------K  224 (257)
Q Consensus       155 ~~~~aPE~~----~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~  224 (257)
                      +.|+|||.+    .+..++.++||||||+++|||++|+.||........               .........      .
T Consensus       189 ~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~---------------~~~~~~~~~~~~~~~~  253 (327)
T 3aln_A          189 RPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFD---------------QLTQVVKGDPPQLSNS  253 (327)
T ss_dssp             -----------------CCSHHHHHHHHHHHHHHHHSCCCSSCC----------------------CCCCCSCCCCCCCC
T ss_pred             ccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHHH---------------HHHHHhcCCCCCCCCc
Confidence            899999998    455688999999999999999999999975421110               000111110      1


Q ss_pred             CCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          225 VDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       225 ~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ........+.+++.+||+.||.+|| +.|+++
T Consensus       254 ~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~  285 (327)
T 3aln_A          254 EEREFSPSFINFVNLCLTKDESKRPKYKELLK  285 (327)
T ss_dssp             SSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             ccccCCHHHHHHHHHHhhCChhhCcCHHHHHh
Confidence            1223457899999999999999999 999975

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=100.00  E-value=2.2e-34  Score=243.12  Aligned_cols=209  Identities=15%  Similarity=0.146  Sum_probs=161.0

Q ss_pred             ccccceeeecc-cCCCCCeeeccch----hhhHHHHhHhhhccccccccCCceeeeceeeee----cCceeEEEeecCCC
Q 044568            4 TKLSNFYRSSF-NARNSPWISRVSW----TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL----TSVSGKIERPVRNG   74 (257)
Q Consensus         4 ~~~~~~y~~~~-~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~----~~~~~lV~E~~~~g   74 (257)
                      +.++.||++.. .++..+++|....    .+|++.+.        ....|+|++++.+.+..    ....++||||+++|
T Consensus        29 G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~e~~~~~--------~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~~  100 (299)
T 3m2w_A           29 GINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHW--------RASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGG  100 (299)
T ss_dssp             ETTEEEEEEEETTTCCEEEEEEEECSHHHHHHHHHHH--------HHTTSTTBCCEEEEEEEEETTEEEEEEEECCCCSC
T ss_pred             CCCeEEEEEEEcCCCcEEEEEEecccHHHHHHHHHHH--------HhccCCCchhHHhhhhhhcCCCceEEEEEeecCCC
Confidence            56889999986 4566778887653    44444432        14579999999999887    77889999999999


Q ss_pred             CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCC---CCceEEeeecccccCCCCcccc
Q 044568           75 SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE---FWTAKILDFGLAKLPNEDFVID  151 (257)
Q Consensus        75 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~---~~~~kl~dfg~~~~~~~~~~~~  151 (257)
                      +|.+++.......+++.++..++.|++.||.|||++   +++||||||+||+++.   ++.++|+|||++....      
T Consensus       101 ~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~------  171 (299)
T 3m2w_A          101 ELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT------  171 (299)
T ss_dssp             BHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECCCTTCEECT------
T ss_pred             cHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEecCCCCCcEEEeccccccccc------
Confidence            999999875556799999999999999999999999   9999999999999998   7889999999876322      


Q ss_pred             cCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc-C-CCCC---
Q 044568          152 KRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR-G-TKVD---  226 (257)
Q Consensus       152 ~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~---  226 (257)
                                   +..++.++||||||+++|||++|..||.........             ......+. . ...+   
T Consensus       172 -------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~  225 (299)
T 3m2w_A          172 -------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAIS-------------PGMKTRIRMGQYEFPNPE  225 (299)
T ss_dssp             -------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC--------------------CCSCCSSCTTCCSSCHHH
T ss_pred             -------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhh-------------HHHHHHHhhccccCCchh
Confidence                         234688999999999999999999999754211100             00000000 0 0112   


Q ss_pred             -HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          227 -KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       227 -~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                       ...++.+.+++.+||+.||.+|| ++|+++
T Consensus       226 ~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~  256 (299)
T 3m2w_A          226 WSEVSEEVKMLIRNLLKTEPTQRMTITEFMN  256 (299)
T ss_dssp             HTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             cccCCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence             22457899999999999999999 999985

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=100.00  E-value=1.4e-34  Score=266.34  Aligned_cols=234  Identities=15%  Similarity=0.175  Sum_probs=175.8

Q ss_pred             cccccceeeeccc-CCCCCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeee------cCcee
Q 044568            3 CTKLSNFYRSSFN-ARNSPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL------TSVSG   65 (257)
Q Consensus         3 ~~~~~~~y~~~~~-~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~------~~~~~   65 (257)
                      .+.++.||++... ++..+++|...          +.+|++.+.         ++.|+||+++.+.+..      .+..+
T Consensus        24 ~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~---------~L~HpnIV~l~~v~~~~~~~~~~~~~~   94 (676)
T 3qa8_A           24 TGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMK---------KLNHPNVVSAREVPDGLQKLAPNDLPL   94 (676)
T ss_dssp             BCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHH---------HCCBTTBCCEEECCTTTCCCCTTSSCC
T ss_pred             eCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHH---------hCCCCCCCceeeeecccccccCCCeEE
Confidence            3678999999974 46677888643          334555555         7889999999888665      67889


Q ss_pred             EEEeecCCCCHHHHHhccC-CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCc---eEEeeeccc
Q 044568           66 KIERPVRNGSLTDIIFCSA-ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT---AKILDFGLA  141 (257)
Q Consensus        66 lV~E~~~~gsL~~~l~~~~-~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~---~kl~dfg~~  141 (257)
                      +||||+++|+|.+++.... ...+++..+..++.|++.||.|||++   +++||||+|+||+++.++.   ++|+|||.+
T Consensus        95 LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~---gIVHrDLKP~NILl~~~g~~~~vKL~DFG~a  171 (676)
T 3qa8_A           95 LAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHEN---RIIHRDLKPENIVLQPGPQRLIHKIIDLGYA  171 (676)
T ss_dssp             CEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHT---TBCCCCCCSTTEEEECCSSSCEEEECSCCCC
T ss_pred             EEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEeecCCCceeEEEcccccc
Confidence            9999999999999998532 33689999999999999999999999   9999999999999986654   899999998


Q ss_pred             ccCCCC--cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHh--------h
Q 044568          142 KLPNED--FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKC--------F  211 (257)
Q Consensus       142 ~~~~~~--~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~--------~  211 (257)
                      ......  .....+++.|+|||.+.+..++.++||||||+++||+++|..||.......      .|....        .
T Consensus       172 ~~~~~~~~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~~------~~~~~i~~~~~~~~~  245 (676)
T 3qa8_A          172 KELDQGELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQPV------QWHGKVREKSNEHIV  245 (676)
T ss_dssp             CBTTSCCCCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHHH------HSSTTCC------CC
T ss_pred             cccccccccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccchh------hhhhhhhcccchhhh
Confidence            764432  244578899999999998899999999999999999999999996431110      000000        0


Q ss_pred             hhhh------hhhh-hcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHH
Q 044568          212 INRE------LNKL-VRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAV  254 (257)
Q Consensus       212 ~~~~------~~~~-~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~  254 (257)
                      ....      .... ..+.......++.+.+++.+||+.||++|| ++|++
T Consensus       246 ~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL  296 (676)
T 3qa8_A          246 VYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNP  296 (676)
T ss_dssp             SCCCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCC
T ss_pred             hhhhhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHh
Confidence            0000      0000 111134556788999999999999999999 98754

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1.3e-34  Score=270.16  Aligned_cols=220  Identities=16%  Similarity=0.115  Sum_probs=164.9

Q ss_pred             ccccceeeeccc--CCCCCeeeccchhhhHHHH-hHhhhccccccccCCceeeeceeeeecCc-----eeEEEeecCCCC
Q 044568            4 TKLSNFYRSSFN--ARNSPWISRVSWTADIEVL-SVAMRGSKCTRIRGGLLLNVPVRAKLTSV-----SGKIERPVRNGS   75 (257)
Q Consensus         4 ~~~~~~y~~~~~--~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~h~~i~~~~~~~~~~~~-----~~lV~E~~~~gs   75 (257)
                      +.++.||++...  ++..+++|........+.. .+......+.++.|+||+++.+++...+.     .+|||||+++++
T Consensus        91 G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~~lv~E~~~g~~  170 (681)
T 2pzi_A           91 GGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVGYIVMEYVGGQS  170 (681)
T ss_dssp             ETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEEEEEEECCCCEE
T ss_pred             CCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCceeEEEEEeCCCCc
Confidence            568899999875  4677888865421100000 00011113348899999999999998766     699999999999


Q ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcccccCCC
Q 044568           76 LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK  155 (257)
Q Consensus        76 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~  155 (257)
                      |.+++..    .+++.++..++.|++.||.|||++   +|+||||||+||+++.+ .+||+|||++...... ....+|+
T Consensus       171 L~~~~~~----~l~~~~~~~~~~qi~~aL~~lH~~---giiHrDlkp~NIll~~~-~~kl~DFG~a~~~~~~-~~~~gt~  241 (681)
T 2pzi_A          171 LKRSKGQ----KLPVAEAIAYLLEILPALSYLHSI---GLVYNDLKPENIMLTEE-QLKLIDLGAVSRINSF-GYLYGTP  241 (681)
T ss_dssp             CC----C----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECSS-CEEECCCTTCEETTCC-SCCCCCT
T ss_pred             HHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHC---CCeecccChHHeEEeCC-cEEEEecccchhcccC-CccCCCc
Confidence            9998752    799999999999999999999999   99999999999999986 8999999998865443 4557899


Q ss_pred             CccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHH
Q 044568          156 GYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVK  235 (257)
Q Consensus       156 ~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  235 (257)
                      .|+|||.+.+.. +.++||||||+++|+|++|..||........                     ..........+.+.+
T Consensus       242 ~y~aPE~~~~~~-~~~sDi~slG~~l~~l~~g~~~~~~~~~~~~---------------------~~~~~~~~~~~~l~~  299 (681)
T 2pzi_A          242 GFQAPEIVRTGP-TVATDIYTVGRTLAALTLDLPTRNGRYVDGL---------------------PEDDPVLKTYDSYGR  299 (681)
T ss_dssp             TTSCTTHHHHCS-CHHHHHHHHHHHHHHHHSCCCEETTEECSSC---------------------CTTCHHHHHCHHHHH
T ss_pred             cccCHHHHcCCC-CCceehhhhHHHHHHHHhCCCCCcccccccc---------------------cccccccccCHHHHH
Confidence            999999987654 8899999999999999999998864311100                     000001122356889


Q ss_pred             HHHHcccCCCCCCC-hHHHH
Q 044568          236 VGLWCVQDEPALRP-MKCAV  254 (257)
Q Consensus       236 l~~~cl~~~p~~RP-~~ei~  254 (257)
                      ++.+||+.||.+|| +.+.+
T Consensus       300 li~~~l~~dP~~R~~~~~~l  319 (681)
T 2pzi_A          300 LLRRAIDPDPRQRFTTAEEM  319 (681)
T ss_dssp             HHHHHTCSSGGGSCSSHHHH
T ss_pred             HHhhhccCChhhCCCHHHHH
Confidence            99999999999999 55443

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=1.5e-34  Score=254.97  Aligned_cols=169  Identities=15%  Similarity=0.130  Sum_probs=135.4

Q ss_pred             ceeEEEeecCCCCHHHHHh-----ccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEee
Q 044568           63 VSGKIERPVRNGSLTDIIF-----CSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILD  137 (257)
Q Consensus        63 ~~~lV~E~~~~gsL~~~l~-----~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d  137 (257)
                      ..+++|+++ +++|.+++.     ......+++..+..++.|++.||.|||++   +|+||||||+|||++.++.+||+|
T Consensus       179 ~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~iiHrDiKp~NILl~~~~~~kL~D  254 (413)
T 3dzo_A          179 SRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---GLVHTYLRPVDIVLDQRGGVFLTG  254 (413)
T ss_dssp             SEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECC
T ss_pred             ceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCcccceEEEecCCeEEEEe
Confidence            456777766 579999984     22355678889999999999999999999   999999999999999999999999


Q ss_pred             ecccccCCCCcccccCCCCccCcccc----------cCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHH
Q 044568          138 FGLAKLPNEDFVIDKRDKGYMAPECY----------KRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWV  207 (257)
Q Consensus       138 fg~~~~~~~~~~~~~~~~~~~aPE~~----------~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~  207 (257)
                      ||+++..........+ +.|+|||.+          ....++.++|||||||++|||++|+.||.......         
T Consensus       255 FG~a~~~~~~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~elltg~~Pf~~~~~~~---------  324 (413)
T 3dzo_A          255 FEHLVRDGASAVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPNTDDAALG---------  324 (413)
T ss_dssp             GGGCEETTEEECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHHHSSCCCCTTGGGS---------
T ss_pred             ccceeecCCccccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHHHCCCCCCCcchhh---------
Confidence            9998876666566677 899999999          45567889999999999999999999997542111         


Q ss_pred             HHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          208 YKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                             .....+...   ...++.+.+++.+||+.||++|| +.|+++
T Consensus       325 -------~~~~~~~~~---~~~~~~~~~li~~~l~~dP~~Rpt~~~~l~  363 (413)
T 3dzo_A          325 -------GSEWIFRSC---KNIPQPVRALLEGFLRYPKEDRLLPLQAME  363 (413)
T ss_dssp             -------CSGGGGSSC---CCCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             -------hHHHHHhhc---ccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence                   011111111   12346789999999999999999 998864

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.97  E-value=3.9e-32  Score=228.35  Aligned_cols=207  Identities=13%  Similarity=0.049  Sum_probs=154.9

Q ss_pred             cccccceeeecccC-CCCCeeeccch------------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEe
Q 044568            3 CTKLSNFYRSSFNA-RNSPWISRVSW------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIER   69 (257)
Q Consensus         3 ~~~~~~~y~~~~~~-~~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E   69 (257)
                      .+.++.||++.... +..+++|....            .+|++.         +.++.|+||+++.+.+...+..++|||
T Consensus        41 ~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~---------l~~l~hp~iv~~~~~~~~~~~~~lv~e  111 (286)
T 3uqc_A           41 GVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLR---------LSRIDKPGVARVLDVVHTRAGGLVVAE  111 (286)
T ss_dssp             BSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHH---------HHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             ccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHH---------HhcCCCCCcceeeEEEEECCcEEEEEE
Confidence            36789999999765 66778886542            222222         337899999999999999999999999


Q ss_pred             ecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcc
Q 044568           70 PVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFV  149 (257)
Q Consensus        70 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~  149 (257)
                      |+++++|.+++..   . ....++..++.|++.||.|||++   +++||||||+||+++.++.+||++++          
T Consensus       112 ~~~g~~L~~~l~~---~-~~~~~~~~i~~ql~~aL~~lH~~---givH~Dikp~NIll~~~g~~kl~~~~----------  174 (286)
T 3uqc_A          112 WIRGGSLQEVADT---S-PSPVGAIRAMQSLAAAADAAHRA---GVALSIDHPSRVRVSIDGDVVLAYPA----------  174 (286)
T ss_dssp             CCCEEEHHHHHTT---C-CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEETTSCEEECSCC----------
T ss_pred             ecCCCCHHHHHhc---C-CChHHHHHHHHHHHHHHHHHHHC---CCccCCCCcccEEEcCCCCEEEEecc----------
Confidence            9999999999953   2 45567889999999999999999   99999999999999999999997443          


Q ss_pred             cccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHH
Q 044568          150 IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKN  229 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (257)
                             |++       +++.++||||||+++|||++|+.||.............    . .....   ...........
T Consensus       175 -------~~~-------~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~~----~-~~~~~---~~~~~~~~~~~  232 (286)
T 3uqc_A          175 -------TMP-------DANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPAE----R-DTAGQ---PIEPADIDRDI  232 (286)
T ss_dssp             -------CCT-------TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSEECC----B-CTTSC---BCCHHHHCTTS
T ss_pred             -------ccC-------CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhHHHH----H-HhccC---CCChhhcccCC
Confidence                   333       36899999999999999999999998653221000000    0 00000   00000112234


Q ss_pred             HHHHHHHHHHcccCCCCCCChHHHHHhC
Q 044568          230 LENLVKVGLWCVQDEPALRPMKCAVMML  257 (257)
Q Consensus       230 ~~~l~~l~~~cl~~~p~~RP~~ei~~~L  257 (257)
                      ++.+.+++.+||+.||++|-+.|+++.|
T Consensus       233 ~~~l~~li~~~l~~dP~~Rs~~el~~~L  260 (286)
T 3uqc_A          233 PFQISAVAARSVQGDGGIRSASTLLNLM  260 (286)
T ss_dssp             CHHHHHHHHHHHCTTSSCCCHHHHHHHH
T ss_pred             CHHHHHHHHHHcccCCccCCHHHHHHHH
Confidence            5678999999999999999877777654

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.97  E-value=1.3e-32  Score=235.88  Aligned_cols=225  Identities=9%  Similarity=-0.008  Sum_probs=159.4

Q ss_pred             ccccceeeecccCCCCCeeeccc-----------------hhhhHHHHhHhhhccccccccCCceeeece----------
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS-----------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPV----------   56 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~-----------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~----------   56 (257)
                      +.++.||+++. ++..+++|...                 +.+|++++.....-.....-.|+|++++.+          
T Consensus        31 G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l~~~~~~~~~~hp  109 (336)
T 2vuw_A           31 GVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLNSVHCVQGSYPP  109 (336)
T ss_dssp             ETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCEEEEEEEESSCCH
T ss_pred             cCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhhcceeEecCCCcH
Confidence            56899999987 67788888654                 345555554111100001113555555444          


Q ss_pred             -------eeee-------------cCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHh-hCCCCCe
Q 044568           57 -------RAKL-------------TSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLH-DECEPPI  115 (257)
Q Consensus        57 -------~~~~-------------~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh-~~~~~~i  115 (257)
                             .+..             .+..+||||||++|++.+.+.   ...+++.++..++.|++.||.||| ++   +|
T Consensus       110 ~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~---~~~~~~~~~~~i~~qi~~aL~~lH~~~---~i  183 (336)
T 2vuw_A          110 LLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMR---TKLSSLATAKSILHQLTASLAVAEASL---RF  183 (336)
T ss_dssp             HHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGT---TTCCCHHHHHHHHHHHHHHHHHHHHHH---CC
T ss_pred             HHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHhC---CE
Confidence                   4333             678999999999997777774   356899999999999999999999 89   99


Q ss_pred             eeccCCCCceeeCCCC--------------------ceEEeeecccccCCCCcccccCCCCccCcccccCCCCCccccch
Q 044568          116 LHCDIKPQNILMDEFW--------------------TAKILDFGLAKLPNEDFVIDKRDKGYMAPECYKRTPISVKADVY  175 (257)
Q Consensus       116 ~h~dl~~~nil~~~~~--------------------~~kl~dfg~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~  175 (257)
                      +||||||+|||++.++                    .+||+|||+++.....  ...||+.|+|||.+.+.. +.++|||
T Consensus       184 vHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~--~~~gt~~y~aPE~~~g~~-~~~~Diw  260 (336)
T 2vuw_A          184 EHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG--IVVFCDVSMDEDLFTGDG-DYQFDIY  260 (336)
T ss_dssp             BCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT--EEECCCCTTCSGGGCCCS-SHHHHHH
T ss_pred             eECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC--cEEEeecccChhhhcCCC-ccceehh
Confidence            9999999999999886                    8999999999864432  447899999999998766 8999999


Q ss_pred             hHHHH-HHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhh--hhcCC---CCCHHHHHHHHHHHHHcccCCCCCCC
Q 044568          176 GYGIV-LLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNK--LVRGT---KVDKKNLENLVKVGLWCVQDEPALRP  249 (257)
Q Consensus       176 s~G~~-l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~l~~l~~~cl~~~p~~RP  249 (257)
                      |++++ .+++++|..||...          .|....  ......  .....   .......+.+.+|+.+||+.|    .
T Consensus       261 sl~~~~~~~~~~g~~p~~~~----------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~d----s  324 (336)
T 2vuw_A          261 RLMKKENNNRWGEYHPYSNV----------LWLHYL--TDKMLKQMTFKTKCNTPAMKQIKRKIQEFHRTMLNFS----S  324 (336)
T ss_dssp             HHHHHHHTTCTTSCCTHHHH----------HHHHHH--HHHHHHTCCCSSCCCSHHHHHHHHHHHHHHHHGGGSS----S
T ss_pred             hhhCCCCcccccccCCCcch----------hhhhHH--HHhhhhhhccCcccchhhhhhcCHHHHHHHHHHhccC----C
Confidence            98766 78888899998421          110000  000100  00111   123456789999999999965    4


Q ss_pred             hHHHH
Q 044568          250 MKCAV  254 (257)
Q Consensus       250 ~~ei~  254 (257)
                      ++|++
T Consensus       325 a~e~l  329 (336)
T 2vuw_A          325 ATDLL  329 (336)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77776

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.94  E-value=1.2e-28  Score=225.23  Aligned_cols=148  Identities=15%  Similarity=0.100  Sum_probs=110.8

Q ss_pred             chhhhHHHHhHhhhccccccc-cCCceeeeceeeeecCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHH
Q 044568           26 SWTADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGI  104 (257)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l  104 (257)
                      +|.+|++++.         ++ .|+|++++..++.+++..||||||++|++|.++|.  ....++..   .++.||+.||
T Consensus       287 ~~~~E~~~l~---------~~~~~~~i~~~~~~~ed~~~~yLVMEyv~G~~L~d~i~--~~~~l~~~---~I~~QIl~AL  352 (569)
T 4azs_A          287 ELHNEIKFLT---------QPPAGFDAPAVLAHGENAQSGWLVMEKLPGRLLSDMLA--AGEEIDRE---KILGSLLRSL  352 (569)
T ss_dssp             HHHHHHHHHH---------SCCTTCCCCCEEEEEECSSEEEEEEECCCSEEHHHHHH--TTCCCCHH---HHHHHHHHHH
T ss_pred             HHHHHHHHHH---------hcCCCCCeeEEEEEEEECCEEEEEEecCCCCcHHHHHH--hCCCCCHH---HHHHHHHHHH
Confidence            3677888777         65 69999999999999999999999999999999998  45566653   5899999999


Q ss_pred             HHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---cccccCCCCccCcccccCCCCCccccchhHHHHH
Q 044568          105 LYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVL  181 (257)
Q Consensus       105 ~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l  181 (257)
                      .|+|++   ||+||||||+|||++.++.+||+|||+++.....   .....||+.|+|||++.+. +..++|+||+|+..
T Consensus       353 ~ylH~~---GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~~~~~~t~vGTp~YmAPE~l~g~-~~~~~d~~s~g~~~  428 (569)
T 4azs_A          353 AALEKQ---GFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDCSWPTNLVQSFFVFVNELFAEN-KSWNGFWRSAPVHP  428 (569)
T ss_dssp             HHHHHT---TCEESCCCGGGEEECTTSCEEECCCTTEESCC---CCSHHHHHHHHHHHHHHC------------------
T ss_pred             HHHHHC---CceeccCchHhEEECCCCCEEEeecccCeeCCCCCccccCceechhhccHHHhCCC-CCCcccccccccch
Confidence            999999   9999999999999999999999999999865432   2445788999999998754 56789999999998


Q ss_pred             HHHHhcCCCC
Q 044568          182 LETICCRKNM  191 (257)
Q Consensus       182 ~el~~g~~pf  191 (257)
                      +++.++..|+
T Consensus       429 ~~l~~~~~~~  438 (569)
T 4azs_A          429 FNLPQPWSNW  438 (569)
T ss_dssp             CCCCTTHHHH
T ss_pred             hhhccccchh
Confidence            8776554443

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.88  E-value=1.3e-23  Score=190.95  Aligned_cols=163  Identities=17%  Similarity=0.144  Sum_probs=133.5

Q ss_pred             ccccceeeecccCCCCCeeeccc-----------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeE
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS-----------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGK   66 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~-----------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~l   66 (257)
                      +.++.||+++.. +..+++|...                 +.+|++.+.         ++.|+|+++...++...+..+|
T Consensus       347 G~fg~Vy~~~~~-~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~---------~l~h~nIv~~~~~~~~~~~~~l  416 (540)
T 3en9_A          347 GAEADIKRDSYL-DFDVIIKERVKKGYRDERLDENIRKSRTAREARYLA---------LVKDFGIPAPYIFDVDLDNKRI  416 (540)
T ss_dssp             -CCEEEEEEECS-SCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHH---------HGGGGTCCCCCEEEEETTTTEE
T ss_pred             CCCEEEEEEEEC-CCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHH---------hcCCCCcCceEEEEEeCCccEE
Confidence            578999999544 4455555421                 345555555         7889999977777778888999


Q ss_pred             EEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC
Q 044568           67 IERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE  146 (257)
Q Consensus        67 V~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~  146 (257)
                      ||||+++++|.+++..          +..++.|++.||.|||++   +|+||||||+||+++.  .+||+|||+++....
T Consensus       417 VmE~~~ggsL~~~l~~----------~~~i~~qi~~aL~~LH~~---gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~  481 (540)
T 3en9_A          417 MMSYINGKLAKDVIED----------NLDIAYKIGEIVGKLHKN---DVIHNDLTTSNFIFDK--DLYIIDFGLGKISNL  481 (540)
T ss_dssp             EEECCCSEEHHHHSTT----------CTHHHHHHHHHHHHHHHT---TEECTTCCTTSEEESS--SEEECCCTTCEECCC
T ss_pred             EEECCCCCCHHHHHHH----------HHHHHHHHHHHHHHHHHC---cCccCCCCHHHEEECC--eEEEEECccCEECCC
Confidence            9999999999999963          568999999999999999   9999999999999998  999999999987655


Q ss_pred             Cc----------ccccCCCCccCcccccC--CCCCccccchhHHHHHHHHHhcCCCC
Q 044568          147 DF----------VIDKRDKGYMAPECYKR--TPISVKADVYGYGIVLLETICCRKNM  191 (257)
Q Consensus       147 ~~----------~~~~~~~~~~aPE~~~~--~~~~~~~Di~s~G~~l~el~~g~~pf  191 (257)
                      ..          ....+|+.|+|||++..  ..|+...|+|+..+-..+-+-++.+|
T Consensus       482 ~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY  538 (540)
T 3en9_A          482 DEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARY  538 (540)
T ss_dssp             HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCC
T ss_pred             ccccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence            32          24578999999999986  56788899999999888888777766

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.78  E-value=6.2e-20  Score=153.63  Aligned_cols=125  Identities=13%  Similarity=0.035  Sum_probs=98.0

Q ss_pred             ccccceeeecccCCCCCeeeccc---------------------------hhhhHHHHhHhhhccccccccCCceeeece
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS---------------------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPV   56 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~   56 (257)
                      ++++.||++...++..+++|...                           +.+|++.+.         ++.  | ++++.
T Consensus       101 G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~---------~l~--~-~~v~~  168 (282)
T 1zar_A          101 GKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQ---------KLQ--G-LAVPK  168 (282)
T ss_dssp             CSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHH---------HTT--T-SSSCC
T ss_pred             CCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHH---------hcc--C-CCcCe
Confidence            67899999999667788888763                           335555554         444  4 66666


Q ss_pred             eeeecCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEe
Q 044568           57 RAKLTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKIL  136 (257)
Q Consensus        57 ~~~~~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~  136 (257)
                      ... .+..++||||+++|+|.+ +..        .....++.|++.||.|||++   +++||||||.||+++ ++.+||+
T Consensus       169 ~~~-~~~~~lvmE~~~g~~L~~-l~~--------~~~~~i~~qi~~~l~~lH~~---giiHrDlkp~NILl~-~~~vkl~  234 (282)
T 1zar_A          169 VYA-WEGNAVLMELIDAKELYR-VRV--------ENPDEVLDMILEEVAKFYHR---GIVHGDLSQYNVLVS-EEGIWII  234 (282)
T ss_dssp             EEE-EETTEEEEECCCCEEGGG-CCC--------SCHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEEE-TTEEEEC
T ss_pred             EEe-ccceEEEEEecCCCcHHH-cch--------hhHHHHHHHHHHHHHHHHHC---CCEeCCCCHHHEEEE-CCcEEEE
Confidence            543 456799999999999999 531        23457999999999999999   999999999999999 8999999


Q ss_pred             eecccccCCCCcccccCCCCccCccccc
Q 044568          137 DFGLAKLPNEDFVIDKRDKGYMAPECYK  164 (257)
Q Consensus       137 dfg~~~~~~~~~~~~~~~~~~~aPE~~~  164 (257)
                      |||++..          +..+.|||.+.
T Consensus       235 DFG~a~~----------~~~~~a~e~l~  252 (282)
T 1zar_A          235 DFPQSVE----------VGEEGWREILE  252 (282)
T ss_dssp             CCTTCEE----------TTSTTHHHHHH
T ss_pred             ECCCCeE----------CCCCCHHHHHH
Confidence            9999863          23467788764

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.62  E-value=5.4e-16  Score=127.95  Aligned_cols=120  Identities=15%  Similarity=0.091  Sum_probs=86.9

Q ss_pred             cccccceeeecc-cCCCC--Ceeeccc---------------------------------hhhhHHHHhHhhhccccccc
Q 044568            3 CTKLSNFYRSSF-NARNS--PWISRVS---------------------------------WTADIEVLSVAMRGSKCTRI   46 (257)
Q Consensus         3 ~~~~~~~y~~~~-~~~~~--~~i~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~   46 (257)
                      .++++.||++.. .++..  +++|...                                 +.+|++.+.         ++
T Consensus        57 ~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~---------~l  127 (258)
T 1zth_A           57 TGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLE---------RA  127 (258)
T ss_dssp             ECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHH---------HH
T ss_pred             ecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHH---------HH
Confidence            367899999998 67777  8888521                                 223333333         44


Q ss_pred             cCCceeeeceeeeecCceeEEEeecCC-C----CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHh-hCCCCCeeeccC
Q 044568           47 RGGLLLNVPVRAKLTSVSGKIERPVRN-G----SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLH-DECEPPILHCDI  120 (257)
Q Consensus        47 ~h~~i~~~~~~~~~~~~~~lV~E~~~~-g----sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh-~~~~~~i~h~dl  120 (257)
                      .|+++ .++.... .+..+|||||+.+ |    +|.+....     .++.++..++.|++.|+.||| +.   +++||||
T Consensus       128 ~~~~i-~~p~~~~-~~~~~lVmE~~g~~g~~~~~L~~~~~~-----~~~~~~~~i~~qi~~~l~~lH~~~---givHrDl  197 (258)
T 1zth_A          128 KEAGV-SVPQPYT-YMKNVLLMEFIGEDELPAPTLVELGRE-----LKELDVEGIFNDVVENVKRLYQEA---ELVHADL  197 (258)
T ss_dssp             HHTTC-CCCCEEE-EETTEEEEECCEETTEECCBHHHHGGG-----GGGSCHHHHHHHHHHHHHHHHHTS---CEECSSC
T ss_pred             HhCCC-CCCeEEE-cCCCEEEEEecCCCCCccccHHHHhhc-----cChHHHHHHHHHHHHHHHHHHHHC---CEEeCCC
Confidence            44443 2222222 2467899999942 4    77777542     234567889999999999999 88   9999999


Q ss_pred             CCCceeeCCCCceEEeeeccccc
Q 044568          121 KPQNILMDEFWTAKILDFGLAKL  143 (257)
Q Consensus       121 ~~~nil~~~~~~~kl~dfg~~~~  143 (257)
                      ||.|||++.  .++|+|||++..
T Consensus       198 kp~NILl~~--~~~liDFG~a~~  218 (258)
T 1zth_A          198 SEYNIMYID--KVYFIDMGQAVT  218 (258)
T ss_dssp             STTSEEESS--SEEECCCTTCEE
T ss_pred             CHHHEEEcC--cEEEEECccccc
Confidence            999999998  999999999864

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.39  E-value=7e-14  Score=120.98  Aligned_cols=128  Identities=15%  Similarity=0.035  Sum_probs=83.8

Q ss_pred             cccccceeeecccCCCCCeeeccch--------------------h---hhHHHHhHhhhccccccccCCceeeeceeee
Q 044568            3 CTKLSNFYRSSFNARNSPWISRVSW--------------------T---ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAK   59 (257)
Q Consensus         3 ~~~~~~~y~~~~~~~~~~~i~~~~~--------------------~---~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~   59 (257)
                      .+|+|+||++...+++.++||-...                    .   ...+........ .+.++.+. -+.++....
T Consensus       105 ~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~-nL~rL~~~-gv~vp~p~~  182 (397)
T 4gyi_A          105 VGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFA-FMKALYEE-GFPVPEPIA  182 (397)
T ss_dssp             ECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHH-HHHHHHHT-TCSCCCEEE
T ss_pred             eCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHH-HHHHHHhc-CCCCCeeee
Confidence            3689999999998999999984221                    0   011111100011 22222111 122222222


Q ss_pred             ecCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCC--------
Q 044568           60 LTSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW--------  131 (257)
Q Consensus        60 ~~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~--------  131 (257)
                      . ...+|||||++|++|.++...        .....++.|++.+|.+||+.   |++||||||.|||+++++        
T Consensus       183 ~-~~~~LVME~i~G~~L~~l~~~--------~~~~~l~~qll~~l~~lH~~---gIVHrDLKp~NILl~~dgd~~d~~~~  250 (397)
T 4gyi_A          183 Q-SRHTIVMSLVDALPMRQVSSV--------PDPASLYADLIALILRLAKH---GLIHGDFNEFNILIREEKDAEDPSSI  250 (397)
T ss_dssp             E-ETTEEEEECCSCEEGGGCCCC--------SCHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEEEEEECSSCTTSE
T ss_pred             c-cCceEEEEecCCccHhhhccc--------HHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEeCCCCccccccc
Confidence            2 234799999999888776431        23457889999999999999   999999999999998765        


Q ss_pred             --ceEEeeecccccC
Q 044568          132 --TAKILDFGLAKLP  144 (257)
Q Consensus       132 --~~kl~dfg~~~~~  144 (257)
                        .+.++||+-+...
T Consensus       251 ~~~~~iID~~Q~V~~  265 (397)
T 4gyi_A          251 TLTPIIIXFPQMVSM  265 (397)
T ss_dssp             EEEEEECCCTTCEET
T ss_pred             ccceEEEEeCCcccC
Confidence              3889999876543

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=98.88  E-value=4.4e-09  Score=86.18  Aligned_cols=121  Identities=12%  Similarity=0.020  Sum_probs=85.4

Q ss_pred             ccceeeecccCCCCCeeeccc---------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCH
Q 044568            6 LSNFYRSSFNARNSPWISRVS---------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSL   76 (257)
Q Consensus         6 ~~~~y~~~~~~~~~~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL   76 (257)
                      .+.||+.... ++..++|...         +.+|.+.+.      .+..  +..+-++...+...+..++||||++|.+|
T Consensus        27 ~~~v~~~~~~-~~~~vlK~~~~~~~~~~~~~~~E~~~l~------~l~~--~~~vP~v~~~~~~~~~~~lv~e~i~G~~l   97 (263)
T 3tm0_A           27 PAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMML------WLEG--KLPVPKVLHFERHDGWSNLLMSEADGVLC   97 (263)
T ss_dssp             SSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHH------HHTT--TSCCCCEEEEEEETTEEEEEEECCSSEEH
T ss_pred             CCeEEEEECC-CCcEEEEeCCcccCCCHHHHHHHHHHHH------HHhc--CCCCCeEEEEEecCCceEEEEEecCCeeh
Confidence            4668888754 4667777643         456666666      1111  33344556667777889999999999999


Q ss_pred             HHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCC---------------------------------------------
Q 044568           77 TDIIFCSAERNPYWNQRVRIALDVAKGILYLHDEC---------------------------------------------  111 (257)
Q Consensus        77 ~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~---------------------------------------------  111 (257)
                      .+.+.       +..+...++.+++.++..||+..                                             
T Consensus        98 ~~~~~-------~~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  170 (263)
T 3tm0_A           98 SEEYE-------DEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPREL  170 (263)
T ss_dssp             HHHCC-------TTTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTTCSSSSHHHH
T ss_pred             hhccC-------CcccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhccccccccccccccccCCCHHHH
Confidence            88742       11234578899999999999810                                             


Q ss_pred             -----------CCCeeeccCCCCceeeCCCCceEEeeecccc
Q 044568          112 -----------EPPILHCDIKPQNILMDEFWTAKILDFGLAK  142 (257)
Q Consensus       112 -----------~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~  142 (257)
                                 ...++|+|+++.||+++++..+.++||+.+.
T Consensus       171 ~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~  212 (263)
T 3tm0_A          171 YDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG  212 (263)
T ss_dssp             HHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred             HHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence                       0258999999999999876566799998653

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=98.75  E-value=1.7e-08  Score=82.18  Aligned_cols=120  Identities=15%  Similarity=0.017  Sum_probs=80.1

Q ss_pred             ccceeeecccCCCCCeeeccc------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHH
Q 044568            6 LSNFYRSSFNARNSPWISRVS------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDI   79 (257)
Q Consensus         6 ~~~~y~~~~~~~~~~~i~~~~------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~   79 (257)
                      .+.||+....++...++|...      +.+|.+.+....      .. ...+-++.......+..++||||++|.+|.  
T Consensus        33 ~~~v~~~~~~~g~~~vlK~~~~~~~~~~~~E~~~l~~l~------~~-~~~vP~~~~~~~~~~~~~~v~e~i~G~~l~--  103 (264)
T 1nd4_A           33 DAAVFRLSAQGRPVLFVKTDLSGALNELQDEAARLSWLA------TT-GVPCAAVLDVVTEAGRDWLLLGEVPGQDLL--  103 (264)
T ss_dssp             SCEEEEEECTTSCCEEEEEECSCTTSCHHHHHHHHHHHH------TT-TCCBCCEEEEEECSSCEEEEEECCSSEETT--
T ss_pred             CceEEEEecCCCCeEEEEeCCcccchhhhHHHHHHHHHH------hC-CCCCCeEEEeccCCCCCEEEEEecCCcccC--
Confidence            478899887767777777533      356666666211      11 111223455555666789999999998884  


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHhhCC------------------------------------------------
Q 044568           80 IFCSAERNPYWNQRVRIALDVAKGILYLHDEC------------------------------------------------  111 (257)
Q Consensus        80 l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~------------------------------------------------  111 (257)
                      ..  .   .+   ...++.+++..+..||+..                                                
T Consensus       104 ~~--~---~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  175 (264)
T 1nd4_A          104 SS--H---LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARLK  175 (264)
T ss_dssp             TS--C---CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHHHHHH
T ss_pred             cC--c---CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCccHHHHHHHHH
Confidence            22  1   11   2356777788888888751                                                


Q ss_pred             -------CCCeeeccCCCCceeeCCCCceEEeeecccc
Q 044568          112 -------EPPILHCDIKPQNILMDEFWTAKILDFGLAK  142 (257)
Q Consensus       112 -------~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~  142 (257)
                             ...++|+|+++.||+++++..+.++||+.+.
T Consensus       176 ~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~  213 (264)
T 1nd4_A          176 ARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLG  213 (264)
T ss_dssp             HTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred             HhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhcc
Confidence                   0129999999999999877666799999764

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=98.50  E-value=4.6e-07  Score=77.64  Aligned_cols=127  Identities=13%  Similarity=0.059  Sum_probs=85.3

Q ss_pred             cccceeeecccCCCCCeeeccc------------hhhhHHHHhHhhhccccccccCCceeeeceeeeec---CceeEEEe
Q 044568            5 KLSNFYRSSFNARNSPWISRVS------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT---SVSGKIER   69 (257)
Q Consensus         5 ~~~~~y~~~~~~~~~~~i~~~~------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~---~~~~lV~E   69 (257)
                      .+..+|+.+..+ ...+++...            +.+|.+++.....       .+..+.++...+...   +..++|||
T Consensus        50 ~sn~~y~v~~~~-~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~-------~~vpvP~~~~~~~~~~~~g~~~~vme  121 (359)
T 3dxp_A           50 QSNPTFKLVTPG-QTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAG-------TDVPVAKMYALCEDESVIGRAFYIME  121 (359)
T ss_dssp             CCSCEEEEECSS-CEEEEECCCC----------CHHHHHHHHHHHTT-------SSSCCCCEEEEECCTTTTSSCEEEEE
T ss_pred             ccceEEEEEECC-ceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhc-------CCCCCCcEEEECCCCCccCCeEEEEE
Confidence            456778877654 445555443            3455555552111       122233444444444   34789999


Q ss_pred             ecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCC--------------------------------------
Q 044568           70 PVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDEC--------------------------------------  111 (257)
Q Consensus        70 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~--------------------------------------  111 (257)
                      |++|.++.+..    ...++..+...++.+++..|..||+..                                      
T Consensus       122 ~v~G~~l~~~~----~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (359)
T 3dxp_A          122 FVSGRVLWDQS----LPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPAM  197 (359)
T ss_dssp             CCCCBCCCCTT----CTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHHH
T ss_pred             ecCCeecCCCc----cccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChHH
Confidence            99988775422    234778888999999999999999731                                      


Q ss_pred             -----------------CCCeeeccCCCCceeeCCCCc--eEEeeeccccc
Q 044568          112 -----------------EPPILHCDIKPQNILMDEFWT--AKILDFGLAKL  143 (257)
Q Consensus       112 -----------------~~~i~h~dl~~~nil~~~~~~--~kl~dfg~~~~  143 (257)
                                       ...++|+|+++.||+++.++.  +.++||+.+..
T Consensus       198 ~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~  248 (359)
T 3dxp_A          198 DSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL  248 (359)
T ss_dssp             HHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred             HHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence                             137999999999999987643  68999998754

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.31  E-value=6.1e-07  Score=75.10  Aligned_cols=125  Identities=18%  Similarity=0.167  Sum_probs=82.5

Q ss_pred             ceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCC-------------------------------
Q 044568           63 VSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDEC-------------------------------  111 (257)
Q Consensus        63 ~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~-------------------------------  111 (257)
                      ..++|||+++|.+|.+...    ..++..++..++.+++..+..||+..                               
T Consensus        90 ~~~~vm~~i~G~~l~~~~~----~~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (304)
T 3sg8_A           90 MSFAGFTKIKGVPLTPLLL----NNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSREL  165 (304)
T ss_dssp             CSCEEEECCCCEECCHHHH----HTSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTS
T ss_pred             cceEEEcccCCeECCcccc----ccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccC
Confidence            4578999999988876433    23677788888888888888888610                               


Q ss_pred             ------------------------CCCeeeccCCCCceeeCC--CCceEEeeecccccCCCCcccccCCCCc---cCccc
Q 044568          112 ------------------------EPPILHCDIKPQNILMDE--FWTAKILDFGLAKLPNEDFVIDKRDKGY---MAPEC  162 (257)
Q Consensus       112 ------------------------~~~i~h~dl~~~nil~~~--~~~~kl~dfg~~~~~~~~~~~~~~~~~~---~aPE~  162 (257)
                                              .+.++|+|+++.||++++  ...+.++||+.+......... ......   ..|+.
T Consensus       166 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl-~~~~~~~~~~~~~~  244 (304)
T 3sg8_A          166 KGPQMKKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDF-ISLMEDDEEYGMEF  244 (304)
T ss_dssp             CHHHHHHHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHH-HTTCCTTTSCCHHH
T ss_pred             CcccHHHHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHH-HHHHhhccccCHHH
Confidence                                    135799999999999998  556789999887543221100 000000   12221


Q ss_pred             ccC-----CC---------CCccccchhHHHHHHHHHhcCCCCC
Q 044568          163 YKR-----TP---------ISVKADVYGYGIVLLETICCRKNME  192 (257)
Q Consensus       163 ~~~-----~~---------~~~~~Di~s~G~~l~el~~g~~pf~  192 (257)
                      ...     +.         .....+.|+++.++|.+.+|..+|.
T Consensus       245 ~~~~l~~Y~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~g~~~~~  288 (304)
T 3sg8_A          245 VSKILNHYKHKDIPTVLEKYRMKEKYWSFEKIIYGKEYGYMDWY  288 (304)
T ss_dssp             HHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            100     00         1123689999999999999998873

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=97.69  E-value=0.0002  Score=58.40  Aligned_cols=122  Identities=13%  Similarity=0.092  Sum_probs=77.7

Q ss_pred             cceeeecccCCC-CCeeeccc------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHHHH
Q 044568            7 SNFYRSSFNARN-SPWISRVS------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLTDI   79 (257)
Q Consensus         7 ~~~y~~~~~~~~-~~~i~~~~------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~~~   79 (257)
                      +.||+-....+. ..++|...      +..|...+.. +.+    .++-|   ++...+...+..++|||+++|.++.+.
T Consensus        39 ~~v~rl~~~~~~~~~~lk~~~~~~~~~~~~E~~~l~~-l~~----~vPVP---~v~~~~~~~~~~~lvme~l~G~~~~~~  110 (272)
T 4gkh_A           39 ATIYRLYGKPNAPELFLKHGKGSVANDVTDEMVRLNW-LTA----FMPLP---TIKHFIRTPDDAWLLTTAIPGKTAFQV  110 (272)
T ss_dssp             CEEEEEECCTTCCCEEEEEEETHHHHHHHHHHHHHHH-HTT----TSCCC---CEEEEEEETTEEEEEEECCCSEEHHHH
T ss_pred             CeEEEEEecCCCeEEEEEECCCCCHhHHHHHHHHHHH-hcc----CCCcC---eEEEEEEECCeEEEEEEeeCCcccccc
Confidence            357877655444 45566533      3455555552 122    22323   334556677889999999999888876


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHhhCC------------------------------------------------
Q 044568           80 IFCSAERNPYWNQRVRIALDVAKGILYLHDEC------------------------------------------------  111 (257)
Q Consensus        80 l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~------------------------------------------------  111 (257)
                      ...      .......+..+++..+.-||+..                                                
T Consensus       111 ~~~------~~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  184 (272)
T 4gkh_A          111 LEE------YPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQVWKEMH  184 (272)
T ss_dssp             HHH------CGGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHHHHHHHH
T ss_pred             ccC------CHHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHHHHHHHH
Confidence            542      11233455666666666666531                                                


Q ss_pred             -------CCCeeeccCCCCceeeCCCCceEEeeecccc
Q 044568          112 -------EPPILHCDIKPQNILMDEFWTAKILDFGLAK  142 (257)
Q Consensus       112 -------~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~  142 (257)
                             .+.++|+|+++.||++++++.+-|+||+.+.
T Consensus       185 ~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~  222 (272)
T 4gkh_A          185 KLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVG  222 (272)
T ss_dssp             TTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred             hcccccCCcEEEcCCCCCCeEEEECCeEEEEEECcccc
Confidence                   1247899999999999987777799998764

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=97.30  E-value=0.00085  Score=55.96  Aligned_cols=78  Identities=23%  Similarity=0.187  Sum_probs=52.2

Q ss_pred             cCceeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhC------------------------------
Q 044568           61 TSVSGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDE------------------------------  110 (257)
Q Consensus        61 ~~~~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~------------------------------  110 (257)
                      .+..++|||+++|.++.+...    ..++..+...++.+++..|..||+.                              
T Consensus        85 ~g~~~~v~e~i~G~~l~~~~~----~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~  160 (306)
T 3tdw_A           85 DGNPFVGYRKVQGQILGEDGM----AVLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQV  160 (306)
T ss_dssp             TSCEEEEEECCCSEECHHHHH----TTSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHT
T ss_pred             CCceEEEEeccCCeECchhhh----hhCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhc
Confidence            345789999999988876432    1234445555555555555555542                              


Q ss_pred             ---------------------------CCCCeeeccCCCCceeeCC---CCc-eEEeeecccc
Q 044568          111 ---------------------------CEPPILHCDIKPQNILMDE---FWT-AKILDFGLAK  142 (257)
Q Consensus       111 ---------------------------~~~~i~h~dl~~~nil~~~---~~~-~kl~dfg~~~  142 (257)
                                                 ..+.++|+|+++.|++++.   ++. ..|+||+.+.
T Consensus       161 ~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~  223 (306)
T 3tdw_A          161 FPLLDESLRDYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAA  223 (306)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCE
T ss_pred             ccccchhhHHHHHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcC
Confidence                                       1225699999999999987   345 4899998765

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=97.21  E-value=0.0022  Score=50.58  Aligned_cols=105  Identities=9%  Similarity=-0.053  Sum_probs=66.6

Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcccccC
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKR  153 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~  153 (257)
                      -||.++|.. .+.++++++++.++.|.+.+|.-.-.+.  .-..+=..+..|++..+|.+.+.+ ..+.         ..
T Consensus        33 vSL~eIL~~-~~~PlsEEqaWALc~Qc~~~L~~~~~~~--~~~~~i~~~~~i~l~~dG~V~f~~-~~s~---------~~   99 (229)
T 2yle_A           33 LSLEEILRL-YNQPINEEQAWAVCYQCCGSLRAAARRR--QPRHRVRSAAQIRVWRDGAVTLAP-AADD---------AG   99 (229)
T ss_dssp             EEHHHHHHH-HTSCCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCSGGGEEEETTSCEEECC-C--------------
T ss_pred             ccHHHHHHH-cCCCcCHHHHHHHHHHHHHHHHhhhhcc--cCCceecCCcceEEecCCceeccc-cccc---------cc
Confidence            489999986 7889999999999999999987663210  111223345677777777776643 1110         11


Q ss_pred             CCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCC
Q 044568          154 DKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNME  192 (257)
Q Consensus       154 ~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~  192 (257)
                      ...+.|||... ...+.+.=|||+|+++|..+--..|-.
T Consensus       100 ~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALDygL~e~  137 (229)
T 2yle_A          100 EPPPVAGKLGY-SQCMETEVIESLGIIIYKALDYGLKEN  137 (229)
T ss_dssp             -------CCSS-SSSCHHHHHHHHHHHHHHHHTTTCCTT
T ss_pred             ccCCCChhhcc-ccchHHHHHHHHHHHHHHHhhcCCCcc
Confidence            23467887763 334677889999999999997555543

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=96.68  E-value=0.0035  Score=53.12  Aligned_cols=30  Identities=27%  Similarity=0.533  Sum_probs=25.2

Q ss_pred             CCeeeccCCCCceeeCCCCceEEeeecccc
Q 044568          113 PPILHCDIKPQNILMDEFWTAKILDFGLAK  142 (257)
Q Consensus       113 ~~i~h~dl~~~nil~~~~~~~kl~dfg~~~  142 (257)
                      +.++|+|+++.||+++++..+.|+||+.+.
T Consensus       222 ~~l~HgDl~~~Nil~~~~~~~~vIDwe~a~  251 (357)
T 3ats_A          222 PVLLWGDARVGNVLYRDFQPVAVLDWEMVA  251 (357)
T ss_dssp             CEEECSSCSGGGEEEETTEEEEECCGGGCE
T ss_pred             ceEEeCCCCCCeEEEeCCcEEEEEcccccc
Confidence            378999999999999965457899998764

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=95.88  E-value=0.039  Score=46.08  Aligned_cols=30  Identities=33%  Similarity=0.365  Sum_probs=25.9

Q ss_pred             CeeeccCCCCceeeCCC----CceEEeeeccccc
Q 044568          114 PILHCDIKPQNILMDEF----WTAKILDFGLAKL  143 (257)
Q Consensus       114 ~i~h~dl~~~nil~~~~----~~~kl~dfg~~~~  143 (257)
                      .++|+|+++.||+++.+    ..+.++||+.+..
T Consensus       184 ~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~  217 (333)
T 3csv_A          184 VFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL  217 (333)
T ss_dssp             EEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred             eeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence            79999999999999874    6789999987653

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=95.66  E-value=0.038  Score=45.23  Aligned_cols=62  Identities=10%  Similarity=-0.001  Sum_probs=37.3

Q ss_pred             ccccceeeecccCCCCCeeeccc---------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS---------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNG   74 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~g   74 (257)
                      +.++.||+-++.+++.+++|...         +..|.+.+......   ..++-|-++      .. +..++||||.+++
T Consensus        26 G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~---~~vpvP~v~------~~-~~~~lv~e~l~~~   95 (288)
T 3f7w_A           26 SHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRS---FGSPVPQVA------GW-DDRTLAMEWVDER   95 (288)
T ss_dssp             ETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCS---TTCCSCCEE------EE-ETTEEEEECCCCC
T ss_pred             CCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhh---CCCCcceEE------ec-cCceEEEEeeccc
Confidence            34678999999999988888632         35566666521111   022223222      11 3457899998766


Q ss_pred             C
Q 044568           75 S   75 (257)
Q Consensus        75 s   75 (257)
                      .
T Consensus        96 ~   96 (288)
T 3f7w_A           96 P   96 (288)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=95.58  E-value=0.047  Score=46.87  Aligned_cols=28  Identities=25%  Similarity=0.452  Sum_probs=24.3

Q ss_pred             CeeeccCCCCceeeCCCCceEEeeecccc
Q 044568          114 PILHCDIKPQNILMDEFWTAKILDFGLAK  142 (257)
Q Consensus       114 ~i~h~dl~~~nil~~~~~~~kl~dfg~~~  142 (257)
                      .++|+|+++.||+++.+ .++++||..+.
T Consensus       228 ~L~HGDl~~~Nil~~~~-~~~lID~e~a~  255 (397)
T 2olc_A          228 TLIHGDLHTGSIFASEH-ETKVIDPEFAF  255 (397)
T ss_dssp             EEECSCCSGGGEEECSS-CEEECCCTTCE
T ss_pred             ceeeCCCCcCcEEEeCC-CeEEEeCcccc
Confidence            89999999999999876 58899997654

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=95.44  E-value=0.051  Score=45.35  Aligned_cols=27  Identities=19%  Similarity=0.181  Sum_probs=23.4

Q ss_pred             CCCeeeccCCCCceeeCCCCceEEeeec
Q 044568          112 EPPILHCDIKPQNILMDEFWTAKILDFG  139 (257)
Q Consensus       112 ~~~i~h~dl~~~nil~~~~~~~kl~dfg  139 (257)
                      .+.++|+|+.+.|++++.++ +.+.|+.
T Consensus       206 ~~~l~HgD~~~~N~l~~~~~-~~~iD~~  232 (312)
T 3jr1_A          206 KPSILHGNLWIENCIQVDDK-IFVCNPA  232 (312)
T ss_dssp             CCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred             CceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence            45899999999999999886 8888874

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=94.51  E-value=0.048  Score=45.40  Aligned_cols=30  Identities=23%  Similarity=0.304  Sum_probs=26.5

Q ss_pred             CCeeeccCCCCceeeCCCCceEEeeecccc
Q 044568          113 PPILHCDIKPQNILMDEFWTAKILDFGLAK  142 (257)
Q Consensus       113 ~~i~h~dl~~~nil~~~~~~~kl~dfg~~~  142 (257)
                      ..++|+|+++.||+++.++.+.++||+.+.
T Consensus       222 ~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~  251 (346)
T 2q83_A          222 PNLCHQDYGTGNTLLGENEQIWVIDLDTVS  251 (346)
T ss_dssp             CCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred             CceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence            389999999999999877789999998764

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=92.44  E-value=0.32  Score=39.84  Aligned_cols=28  Identities=29%  Similarity=0.322  Sum_probs=23.5

Q ss_pred             CeeeccCCCCceeeCCCCceEEeeecccc
Q 044568          114 PILHCDIKPQNILMDEFWTAKILDFGLAK  142 (257)
Q Consensus       114 ~i~h~dl~~~nil~~~~~~~kl~dfg~~~  142 (257)
                      .++|+|+.+.|++ ..++.+.++||..+.
T Consensus       174 ~l~HgDl~~~Nil-~~~~~~~lID~e~a~  201 (301)
T 3dxq_A          174 AACHCDPLCENFL-DTGERMWIVDWEYSG  201 (301)
T ss_dssp             EEECSCCCGGGEE-ECSSCEEECCCTTCE
T ss_pred             eeeccCCCcCCEE-ECCCCEEEEeccccc
Confidence            5899999999999 555678999998764

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=92.07  E-value=0.14  Score=44.34  Aligned_cols=29  Identities=10%  Similarity=0.315  Sum_probs=25.8

Q ss_pred             CeeeccCCCCceeeCCCCceEEeeeccccc
Q 044568          114 PILHCDIKPQNILMDEFWTAKILDFGLAKL  143 (257)
Q Consensus       114 ~i~h~dl~~~nil~~~~~~~kl~dfg~~~~  143 (257)
                      .++|+|+++.||+++.++ +.++||+.+..
T Consensus       233 ~liHGDl~~~Nil~~~~~-~~lID~e~a~~  261 (420)
T 2pyw_A          233 ALIHGDLHTGSVMVTQDS-TQVIDPEFSFY  261 (420)
T ss_dssp             EEECSCCSGGGEEECSSC-EEECCCTTCEE
T ss_pred             eEEecCCCCCcEEEeCCC-CEEEeCccccc
Confidence            899999999999998775 99999987753

>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}

Probab=88.97  E-value=1.3  Score=34.67  Aligned_cols=119  Identities=11%  Similarity=0.085  Sum_probs=80.0

Q ss_pred             cccccCCceeeeceeeeecCceeEEEeecCCC-CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCC
Q 044568           43 CTRIRGGLLLNVPVRAKLTSVSGKIERPVRNG-SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIK  121 (257)
Q Consensus        43 ~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~g-sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~  121 (257)
                      +....+++++.. .+...++...+.++.-+++ ++.. +.     .++...+++++..|+....++++     -+|--++
T Consensus        39 LL~~~~~~Fl~~-~I~e~eD~v~~~y~~~~~~~~f~~-ik-----~~~~~eKlr~l~ni~~l~~~~~~-----r~tf~L~  106 (215)
T 4ann_A           39 LLEQHSPYFIDA-ELTELRDSFQIHYDINDNHTPFDN-IK-----SFTKNEKLRYLLNIKNLEEVNRT-----RYTFVLA  106 (215)
T ss_dssp             GGGSCCTTBCCE-EEEECSSEEEEEECCCTTSEEGGG-GG-----GSCHHHHHHHHHHGGGGGGGGGS-----SEECCCS
T ss_pred             HHhccCCcccce-EEEEcccEEEEEEEcCcccCCHHH-HH-----hcCHHHHHHHHHHHHHHHHHhcC-----ceEEEEe
Confidence            334557777755 3444556666666654433 4444 33     37889999999999987765554     4788899


Q ss_pred             CCceeeCCCCceEEeeecccccCCCCcccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCC
Q 044568          122 PQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNME  192 (257)
Q Consensus       122 ~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~  192 (257)
                      |.|+.++.++.+++.-.|+...              ++|.     ..+...=+-.+=+++..+++++..|.
T Consensus       107 P~NL~f~~~~~p~i~~RGik~~--------------l~P~-----~~~ee~fL~qyKAliiall~~K~~Fe  158 (215)
T 4ann_A          107 PDELFFTRDGLPIAKTRGLQNV--------------VDPL-----PVSEAEFLTRYKALVICAFNEKQSFD  158 (215)
T ss_dssp             GGGEEECTTSCEEESCCEETTT--------------BSCC-----CCCHHHHHHHHHHHHHHHHCTTCCHH
T ss_pred             cceEEEcCCCCEEEEEccCccC--------------CCCC-----CCCHHHHHHHHHHHHHHHHcCCCCHH
Confidence            9999999999999988776321              2332     11222224447788889999988885

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=87.96  E-value=0.14  Score=42.32  Aligned_cols=29  Identities=21%  Similarity=0.303  Sum_probs=24.9

Q ss_pred             CeeeccCCCCceeeCCCCceEEeeecccc
Q 044568          114 PILHCDIKPQNILMDEFWTAKILDFGLAK  142 (257)
Q Consensus       114 ~i~h~dl~~~nil~~~~~~~kl~dfg~~~  142 (257)
                      +++|+|+++.||+++++..+.++||+.+.
T Consensus       188 ~liHgDl~~~Nil~~~~~~~~lIDf~~a~  216 (322)
T 2ppq_A          188 GVIHADLFQDNVFFLGDELSGLIDFYFAC  216 (322)
T ss_dssp             EEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             ccCCCCCCccCEEEeCCceEEEecchhcc
Confidence            78999999999999887556899998654

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=86.39  E-value=0.68  Score=38.18  Aligned_cols=27  Identities=30%  Similarity=0.265  Sum_probs=23.8

Q ss_pred             CeeeccCCCCceeeCCCCceEEeeecccc
Q 044568          114 PILHCDIKPQNILMDEFWTAKILDFGLAK  142 (257)
Q Consensus       114 ~i~h~dl~~~nil~~~~~~~kl~dfg~~~  142 (257)
                      .++|+|+++.||+++ + .+.++||+.+.
T Consensus       196 ~l~HgD~~~~Nil~~-~-~~~lIDfe~a~  222 (328)
T 1zyl_A          196 LRLHGDCHAGNILWR-D-GPMFVDLDDAR  222 (328)
T ss_dssp             EECCSSCSGGGEEES-S-SEEECCCTTCC
T ss_pred             eeeeCCCCcccEeEc-C-CCEEEECCCCC
Confidence            689999999999998 4 88999998664

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=82.38  E-value=0.92  Score=37.93  Aligned_cols=29  Identities=24%  Similarity=0.339  Sum_probs=25.9

Q ss_pred             CeeeccCCCCceeeCCCCceEEeeecccc
Q 044568          114 PILHCDIKPQNILMDEFWTAKILDFGLAK  142 (257)
Q Consensus       114 ~i~h~dl~~~nil~~~~~~~kl~dfg~~~  142 (257)
                      .++|+|+.+.|++++.++.+.++||+.+.
T Consensus       207 ~~~HgD~~~~N~l~~~~~~~~~iD~e~~~  235 (339)
T 3i1a_A          207 VLCHSDIHAGNVLVGNEESIYIIDWDEPM  235 (339)
T ss_dssp             EEECSCCCGGGEEECGGGCEEECCCSSCE
T ss_pred             eeEeCCCCcCCEEEeCCCeEEEEECCCCe
Confidence            78999999999999977789999997654

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=81.07  E-value=0.67  Score=39.10  Aligned_cols=28  Identities=21%  Similarity=0.407  Sum_probs=23.4

Q ss_pred             CeeeccCCCCceeeCCCCceEEeeecccc
Q 044568          114 PILHCDIKPQNILMDEFWTAKILDFGLAK  142 (257)
Q Consensus       114 ~i~h~dl~~~nil~~~~~~~kl~dfg~~~  142 (257)
                      .++|+|+.+.||+++++. +.++||..+.
T Consensus       213 ~l~HgDl~~~Nil~~~~~-~~lID~e~a~  240 (369)
T 3c5i_A          213 VFCHNDLQENNIINTNKC-LRLIDFEYSG  240 (369)
T ss_dssp             EEECSCCCGGGEEECC-C-EEECCCTTCE
T ss_pred             EEEeCCCCcccEEecCCc-EEEEEecCCC
Confidence            689999999999998664 8999997654

>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}

Probab=80.89  E-value=4.5  Score=31.63  Aligned_cols=115  Identities=11%  Similarity=0.078  Sum_probs=75.0

Q ss_pred             ccCCceeeeceeeeecCceeEEEeecCCC-CHHHHHhccCCCCCCHHHHHHHHHHHHHHHH-HHhhCCCCCeeeccCCCC
Q 044568           46 IRGGLLLNVPVRAKLTSVSGKIERPVRNG-SLTDIIFCSAERNPYWNQRVRIALDVAKGIL-YLHDECEPPILHCDIKPQ  123 (257)
Q Consensus        46 ~~h~~i~~~~~~~~~~~~~~lV~E~~~~g-sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~-~lh~~~~~~i~h~dl~~~  123 (257)
                      ..|+.+  -..+-..++...+.++.-+++ ++..+ .     .++..++++++..++.... +++     .-+|--++|.
T Consensus        47 ~~~~~f--~~~I~~~eD~~~i~y~~~~~~~~f~~i-~-----~~~~~eKlrll~nl~~L~~~~~~-----~r~tf~l~P~  113 (219)
T 4ano_A           47 EVDPCI--VRDIDVSEDEVKVVIKPPSSFLTFAAI-R-----KTTLLSRIRAAIHLVSKVKHHSA-----RRLIFIVCPE  113 (219)
T ss_dssp             GSCSSS--EEEEEECSSEEEEEEECCTTCEEHHHH-H-----TSCHHHHHHHHHHHHHHHSSCCS-----SSEECCCCGG
T ss_pred             ccCCCC--CeEEEEeCCEEEEEEEcCcccCcHHHH-H-----hcCHHHHHHHHHHHHHHHHHhhh-----CceeEEEeCc
Confidence            345655  222334556666666655444 55533 3     3788999999999888766 554     4478889999


Q ss_pred             ceeeCCCCceEEeeecccccCCCCcccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCC
Q 044568          124 NILMDEFWTAKILDFGLAKLPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNME  192 (257)
Q Consensus       124 nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~  192 (257)
                      |+.++.++.+++.-.|+-.              -++|.-     .+...=+-.+=|++..++.++..|.
T Consensus       114 NL~f~~~~~p~i~hRGi~~--------------~lpP~e-----~~ee~fl~qyKali~all~~K~~Fe  163 (219)
T 4ano_A          114 NLMFNRALEPFFLHVGVKE--------------SLPPDE-----WDDERLLREVKATVLALTEGEYRFD  163 (219)
T ss_dssp             GEEECTTCCEEESCCEETT--------------TBSSCS-----CCHHHHHHHHHHHHHHHTTCSSCHH
T ss_pred             eEEEeCCCcEEEEEcCCcc--------------cCCCCC-----CCHHHHHHHHHHHHHHHHcCCCCHH
Confidence            9999999999999888632              133321     1222223346678888888888775

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=80.45  E-value=1.4  Score=38.70  Aligned_cols=15  Identities=33%  Similarity=0.698  Sum_probs=14.2

Q ss_pred             CeeeccCCCCceeeC
Q 044568          114 PILHCDIKPQNILMD  128 (257)
Q Consensus       114 ~i~h~dl~~~nil~~  128 (257)
                      .++|+|+.+.|||++
T Consensus       291 v~cHnDl~~gNIL~~  305 (458)
T 2qg7_A          291 VLCHCDLLSSNIINT  305 (458)
T ss_dssp             EEECSCCCGGGEEEC
T ss_pred             eEEecCCCCCcEEee
Confidence            689999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	257
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	2e-30
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	1e-27
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	2e-27
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	2e-27
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	6e-27
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	2e-25
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	2e-25
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	3e-25
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	2e-24
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	3e-24
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	5e-24
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	2e-23
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	2e-23
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	3e-23
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	3e-23
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	3e-23
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	7e-23
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	3e-22
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	3e-22
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	3e-22
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	5e-22
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	1e-20
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	2e-20
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	2e-20
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	4e-20
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	6e-20
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	7e-20
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	1e-19
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	2e-19
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	3e-19
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	1e-18
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	2e-18
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	3e-18
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	2e-17
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	2e-17
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	3e-17
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	3e-17
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	7e-17
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	1e-16
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	8e-16
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	1e-15
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	1e-15
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	2e-15
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	3e-15
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	1e-14
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	2e-14
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	2e-14
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	3e-14
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	6e-14
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	7e-14
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	1e-13
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	3e-13
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	8e-13
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	9e-13
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	3e-12
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	4e-12
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	1e-11
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	1e-11
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	5e-11
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	1e-09
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	1e-09
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	4e-09
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	6e-08

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (281), Expect = 2e-30
 Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 22/196 (11%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
               SL   +     +     + + IA   A+G+ YLH      I+H D+K  NI + E 
Sbjct: 85  CEGSSLYHHLHIIETKFE-MIKLIDIARQTAQGMDYLHA---KSIIHRDLKSNNIFLHED 140

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDK-----GYMAPECYK---RTPISVKADVYGYGIVLL 182
            T KI DFGLA + +      + ++      +MAPE  +   + P S ++DVY +GIVL 
Sbjct: 141 LTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLY 200

Query: 183 ETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQ 242
           E +  +     + +  ++II    V + +++ +L      +KV     + + ++   C++
Sbjct: 201 ELMTGQLPYS-NINNRDQII--FMVGRGYLSPDL------SKVRSNCPKAMKRLMAECLK 251

Query: 243 DEPALRP-MKCAVMML 257
            +   RP     +  +
Sbjct: 252 KKRDERPLFPQILASI 267

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (261), Expect = 1e-27
 Identities = 42/190 (22%), Positives = 77/190 (40%), Gaps = 21/190 (11%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +  GSL D +          +  ++ +LDV + + YL        +H D+  +N+L+ E 
Sbjct: 83  MAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSED 139

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKN 190
             AK+ DFGL K  +      K    + APE  +    S K+DV+ +GI+L E     + 
Sbjct: 140 NVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRV 199

Query: 191 MEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKN--LENLVKVGLWCVQDEPALR 248
                   ++++               ++ +G K+D  +     + +V   C   + A+R
Sbjct: 200 PY-PRIPLKDVV--------------PRVEKGYKMDAPDGCPPAVYEVMKNCWHLDAAMR 244

Query: 249 P-MKCAVMML 257
           P        L
Sbjct: 245 PSFLQLREQL 254

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (263), Expect = 2e-27
 Identities = 37/188 (19%), Positives = 77/188 (40%), Gaps = 10/188 (5%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +  GSL  ++              ++++ V KG+ YL ++    I+H D+KP NIL++  
Sbjct: 86  MDGGSLDQVLK--KAGRIPEQILGKVSIAVIKGLTYLREKH--KIMHRDVKPSNILVNSR 141

Query: 131 WTAKILDFGLAKLPNEDFVIDKR-DKGYMAPECYKRTPISVKADVYGYGIVLLETICCR- 188
              K+ DFG++    +         + YM+PE  + T  SV++D++  G+ L+E    R 
Sbjct: 142 GEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRY 201

Query: 189 ----KNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDE 244
                + +         +  +        R   + +    +D +    + ++  + V + 
Sbjct: 202 PIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEP 261

Query: 245 PALRPMKC 252
           P   P   
Sbjct: 262 PPKLPSGV 269

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (261), Expect = 2e-27
 Identities = 46/213 (21%), Positives = 74/213 (34%), Gaps = 29/213 (13%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDEC-----EPPILHCDIKPQNI 125
             +GSL D +             +++AL  A G+ +LH E      +P I H D+K +NI
Sbjct: 83  HEHGSLFDYLN---RYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNI 139

Query: 126 LMDEFWTAKILDFGLAKLPNEDFVIDKRD-------KGYMAPECY------KRTPISVKA 172
           L+ +  T  I D GLA   +                K YMAPE        K      +A
Sbjct: 140 LVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRA 199

Query: 173 DVYGYGIVLLETICCRKNMEIDASKP---EEIILTNWVYKCFINRELNKLVRGTKVDKKN 229
           D+Y  G+V  E         I         +++ ++   +        + +R    ++  
Sbjct: 200 DIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQ 259

Query: 230 ----LENLVKVGLWCVQDEPALRP-MKCAVMML 257
               L  + K+   C     A R         L
Sbjct: 260 SCEALRVMAKIMRECWYANGAARLTALRIKKTL 292

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 6e-27
 Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 21/192 (10%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           + NGSL D +   +      N+ + +A  +A+G+ ++    E   +H D++  NIL+ + 
Sbjct: 89  MENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDT 145

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDK----GYMAPECYKRTPISVKADVYGYGIVLLETIC 186
            + KI DFGLA+L  ++    +        + APE       ++K+DV+ +GI+L E + 
Sbjct: 146 LSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 205

Query: 187 CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPA 246
             +      + PE I      Y+                     E L ++   C ++ P 
Sbjct: 206 HGRIPYPGMTNPEVIQNLERGYRMVRPDNCP-------------EELYQLMRLCWKERPE 252

Query: 247 LRP-MKCAVMML 257
            RP       +L
Sbjct: 253 DRPTFDYLRSVL 264

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.4 bits (247), Expect = 2e-25
 Identities = 45/194 (23%), Positives = 80/194 (41%), Gaps = 25/194 (12%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +  GSL D +     +     Q V +A  +A G+ Y+        +H D++  NIL+ E 
Sbjct: 93  MSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMN---YVHRDLRAANILVGEN 149

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDK----GYMAPECYKRTPISVKADVYGYGIVLLETIC 186
              K+ DFGLA+L  ++    ++       + APE       ++K+DV+ +GI+L E   
Sbjct: 150 LVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTT 209

Query: 187 CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTK--VDKKNLENLVKVGLWCVQDE 244
             +          E+              L+++ RG +     +  E+L  +   C + E
Sbjct: 210 KGRVPY-PGMVNREV--------------LDQVERGYRMPCPPECPESLHDLMCQCWRKE 254

Query: 245 PALRP-MKCAVMML 257
           P  RP  +     L
Sbjct: 255 PEERPTFEYLQAFL 268

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.5 bits (245), Expect = 2e-25
 Identities = 39/188 (20%), Positives = 70/188 (37%), Gaps = 25/188 (13%)

Query: 71  VRNGSLTDIIFCSAERNPY--WNQRVRIALDVAKGILYLHD--ECEPPILHCDIKPQNIL 126
              G L  +I    +   Y      +R+   +   +   H   +    +LH D+KP N+ 
Sbjct: 87  CEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVF 146

Query: 127 MDEFWTAKILDFGLAKLPNEDFVIDKRDK---GYMAPECYKRTPISVKADVYGYGIVLLE 183
           +D     K+ DFGLA++ N D    K       YM+PE   R   + K+D++  G +L E
Sbjct: 147 LDGKQNVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYE 206

Query: 184 TICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT--KVDKKNLENLVKVGLWCV 241
                      A   +E+                K+  G   ++  +  + L ++    +
Sbjct: 207 LCALMPPF--TAFSQKEL--------------AGKIREGKFRRIPYRYSDELNEIITRML 250

Query: 242 QDEPALRP 249
             +   RP
Sbjct: 251 NLKDYHRP 258

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.5 bits (245), Expect = 3e-25
 Identities = 40/181 (22%), Positives = 65/181 (35%), Gaps = 18/181 (9%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM-DE 129
           + +G+L   +     +             + KG+ +LH    PPI+H D+K  NI +   
Sbjct: 94  MTSGTLKTYLK--RFKVMKIKVLRSWCRQILKGLQFLHTRT-PPIIHRDLKCDNIFITGP 150

Query: 130 FWTAKILDFGLAKLPNEDFVIDKR-DKGYMAPECYKRTPISVKADVYGYGIVLLETICCR 188
             + KI D GLA L    F         +MAPE Y+        DVY +G+ +LE     
Sbjct: 151 TGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSE 209

Query: 189 KNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALR 248
                                  I R +   V+    DK  +  + ++   C++     R
Sbjct: 210 YPYS------------ECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDER 257

Query: 249 P 249
            
Sbjct: 258 Y 258

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.3 bits (239), Expect = 2e-24
 Identities = 35/192 (18%), Positives = 76/192 (39%), Gaps = 22/192 (11%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           + +G L+D +             + + LDV +G   +    E  ++H D+  +N L+ E 
Sbjct: 82  MEHGCLSDYLRTQRGLFA-AETLLGMCLDVCEG---MAYLEEACVIHRDLAARNCLVGEN 137

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDK----GYMAPECYKRTPISVKADVYGYGIVLLETIC 186
              K+ DFG+ +   +D             + +PE +  +  S K+DV+ +G+++ E   
Sbjct: 138 QVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFS 197

Query: 187 CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPA 246
             K    + S  E +   +  ++ +  R  +              ++ ++   C ++ P 
Sbjct: 198 EGKIPYENRSNSEVVEDISTGFRLYKPRLAS-------------THVYQIMNHCWKERPE 244

Query: 247 LRP-MKCAVMML 257
            RP     +  L
Sbjct: 245 DRPAFSRLLRQL 256

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.9 bits (238), Expect = 3e-24
 Identities = 38/196 (19%), Positives = 68/196 (34%), Gaps = 28/196 (14%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
              G L   +    E  P  +    +   V+ G+ YL +      +H D+  +N+L+   
Sbjct: 90  AGGGPLHKFLVGKREEIP-VSNVAELLHQVSMGMKYLEE---KNFVHRDLAARNVLLVNR 145

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDK------GYMAPECYKRTPISVKADVYGYGIVLLET 184
             AKI DFGL+K    D               + APEC      S ++DV+ YG+ + E 
Sbjct: 146 HYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEA 205

Query: 185 ICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKN--LENLVKVGLWCVQ 242
           +   +       K  E++                + +G +++        L  +   C  
Sbjct: 206 LSYGQ-KPYKKMKGPEVM--------------AFIEQGKRMECPPECPPELYALMSDCWI 250

Query: 243 DEPALRP-MKCAVMML 257
            +   RP        +
Sbjct: 251 YKWEDRPDFLTVEQRM 266

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.0 bits (236), Expect = 5e-24
 Identities = 32/186 (17%), Positives = 64/186 (34%), Gaps = 25/186 (13%)

Query: 67  IERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNIL 126
           I      G++   +           +      ++A  + Y H      ++H DIKP+N+L
Sbjct: 84  ILEYAPLGTVYRELQK--LSKFDEQRTATYITELANALSYCH---SKRVIHRDIKPENLL 138

Query: 127 MDEFWTAKILDFGLAK-LPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETI 185
           +      KI DFG +   P+           Y+ PE  +      K D++  G++  E +
Sbjct: 139 LGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFL 198

Query: 186 CCRKNMEIDASKP--EEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQD 243
             +   E +  +   + I    + +  F+      L+                    ++ 
Sbjct: 199 VGKPPFEANTYQETYKRISRVEFTFPDFVTEGARDLIS-----------------RLLKH 241

Query: 244 EPALRP 249
            P+ RP
Sbjct: 242 NPSQRP 247

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.4 bits (234), Expect = 2e-23
 Identities = 44/196 (22%), Positives = 76/196 (38%), Gaps = 26/196 (13%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           + NGSL   +  +  +     Q V +   +A G+ YL D      +H D+  +NIL++  
Sbjct: 109 MENGSLDSFLRQNDGQFT-VIQLVGMLRGIAAGMKYLADMN---YVHRDLAARNILVNSN 164

Query: 131 WTAKILDFGLAKLPNED--------FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLL 182
              K+ DFGL++   +D         +  K    + APE  +    +  +DV+ YGIV+ 
Sbjct: 165 LVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMW 224

Query: 183 ETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQ 242
           E +   +    D +  + I      Y+     +                 L ++ L C Q
Sbjct: 225 EVMSYGERPYWDMTNQDVINAIEQDYRLPPPMDCP-------------SALHQLMLDCWQ 271

Query: 243 DEPALRP-MKCAVMML 257
            +   RP     V  L
Sbjct: 272 KDRNHRPKFGQIVNTL 287

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.5 bits (234), Expect = 2e-23
 Identities = 42/195 (21%), Positives = 76/195 (38%), Gaps = 25/195 (12%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +++G L + I      NP     +   L VAKG   +        +H D+  +N ++DE 
Sbjct: 111 MKHGDLRNFIRNE-THNPTVKDLIGFGLQVAKG---MKFLASKKFVHRDLAARNCMLDEK 166

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDK-------GYMAPECYKRTPISVKADVYGYGIVLLE 183
           +T K+ DFGLA+   +       +K        +MA E  +    + K+DV+ +G++L E
Sbjct: 167 FTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWE 226

Query: 184 TICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQD 243
            +        D +        +        R L +        +   + L +V L C   
Sbjct: 227 LMTRGAPPYPDVN------TFDITVYLLQGRRLLQ-------PEYCPDPLYEVMLKCWHP 273

Query: 244 EPALRP-MKCAVMML 257
           +  +RP     V  +
Sbjct: 274 KAEMRPSFSELVSRI 288

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 93.6 bits (232), Expect = 3e-23
 Identities = 39/192 (20%), Positives = 74/192 (38%), Gaps = 25/192 (13%)

Query: 73  NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT 132
            G+L D +     +       + +A  ++  + YL    +   +H D+  +N L+ E   
Sbjct: 97  YGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHL 153

Query: 133 AKILDFGLAKLPNED----FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCR 188
            K+ DFGL++L   D        K    + APE       S+K+DV+ +G++L E     
Sbjct: 154 VKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYG 213

Query: 189 KNM--EIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPA 246
            +    ID S+  E++  ++  +                 +   E + ++   C Q  P+
Sbjct: 214 MSPYPGIDLSQVYELLEKDYRMER---------------PEGCPEKVYELMRACWQWNPS 258

Query: 247 LRP-MKCAVMML 257
            RP         
Sbjct: 259 DRPSFAEIHQAF 270

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.8 bits (230), Expect = 3e-23
 Identities = 39/194 (20%), Positives = 77/194 (39%), Gaps = 26/194 (13%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           + NG L + +     R     Q + +  DV + + YL        LH D+  +N L+++ 
Sbjct: 81  MANGCLLNYLREMRHRFQ-TQQLLEMCKDVCEAMEYLES---KQFLHRDLAARNCLVNDQ 136

Query: 131 WTAKILDFGLAKLPNED----FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC 186
              K+ DFGL++   +D     V  K    +  PE    +  S K+D++ +G+++ E   
Sbjct: 137 GVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYS 196

Query: 187 CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNL--ENLVKVGLWCVQDE 244
             K M  +     E                  + +G ++ + +L  E +  +   C  ++
Sbjct: 197 LGK-MPYERFTNSETA--------------EHIAQGLRLYRPHLASEKVYTIMYSCWHEK 241

Query: 245 PALRP-MKCAVMML 257
              RP  K  +  +
Sbjct: 242 ADERPTFKILLSNI 255

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.4 bits (231), Expect = 3e-23
 Identities = 39/192 (20%), Positives = 71/192 (36%), Gaps = 23/192 (11%)

Query: 73  NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT 132
                D      +      Q V +   +A G+ YL        +H D+  +NIL++    
Sbjct: 92  ENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLA---NMNYVHRDLAARNILVNSNLV 148

Query: 133 AKILDFGLAKLPNEDFVIDKRDKG------YMAPECYKRTPISVKADVYGYGIVLLETIC 186
            K+ DFGL+++  +D        G      + APE       +  +DV+ +GIV+ E + 
Sbjct: 149 CKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMT 208

Query: 187 CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPA 246
             +    + S  E +   N  ++     +                 + ++ + C Q E A
Sbjct: 209 YGERPYWELSNHEVMKAINDGFRLPTPMDC-------------PSAIYQLMMQCWQQERA 255

Query: 247 LRP-MKCAVMML 257
            RP     V +L
Sbjct: 256 RRPKFADIVSIL 267

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.9 bits (230), Expect = 7e-23
 Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 23/173 (13%)

Query: 90  WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF- 148
             Q +  A DVA+G+ YL    +   +H D+  +NIL+ E + AKI DFGL++       
Sbjct: 126 SQQLLHFAADVARGMDYL---SQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVK 182

Query: 149 -VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWV 207
             + +    +MA E    +  +  +DV+ YG++L E +          +  E        
Sbjct: 183 KTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELY------ 236

Query: 208 YKCFINRELNKLVRGTKVDKKN--LENLVKVGLWCVQDEPALRP-MKCAVMML 257
                     KL +G +++K     + +  +   C +++P  RP     ++ L
Sbjct: 237 ---------EKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSL 280

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.6 bits (224), Expect = 3e-22
 Identities = 39/196 (19%), Positives = 68/196 (34%), Gaps = 29/196 (14%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
              G L   +     R+      + +   V+ G+ YL +      +H D+  +N+L+   
Sbjct: 89  AELGPLNKYLQQ--NRHVKDKNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQ 143

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDK------GYMAPECYKRTPISVKADVYGYGIVLLET 184
             AKI DFGL+K    D    K          + APEC      S K+DV+ +G+++ E 
Sbjct: 144 HYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEA 203

Query: 185 ICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKN--LENLVKVGLWCVQ 242
               +       K  E+                 L +G ++         +  +   C  
Sbjct: 204 FSYGQKP-YRGMKGSEV--------------TAMLEKGERMGCPAGCPREMYDLMNLCWT 248

Query: 243 DEPALRP-MKCAVMML 257
            +   RP      + L
Sbjct: 249 YDVENRPGFAAVELRL 264

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.4 bits (226), Expect = 3e-22
 Identities = 40/176 (22%), Positives = 62/176 (35%), Gaps = 25/176 (14%)

Query: 90  WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFV 149
           +   +  A  VAKG+ +L        +H D+  +N+L+      KI DFGLA+    D  
Sbjct: 163 FEDLLCFAYQVAKGMEFLE---FKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSN 219

Query: 150 IDKRDK-----GYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILT 204
              R        +MAPE       ++K+DV+ YGI+L E      N              
Sbjct: 220 YVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANF--- 276

Query: 205 NWVYKCFINRELNKLVRGTKVDKKNL--ENLVKVGLWCVQDEPALRP-MKCAVMML 257
                         +  G K+D+     E +  +   C   +   RP        L
Sbjct: 277 -----------YKLIQNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFL 321

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 91.1 bits (225), Expect = 3e-22
 Identities = 38/174 (21%), Positives = 59/174 (33%), Gaps = 22/174 (12%)

Query: 90  WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFV 149
             +++ IA  VA G+ YL    E   +H D+  +N L+ E    KI DFGL++       
Sbjct: 139 CAEQLCIARQVAAGMAYLS---ERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADY 195

Query: 150 IDKRDK-----GYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILT 204
                       +M PE       + ++DV+ YG+VL E            +  E     
Sbjct: 196 YKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEE----- 250

Query: 205 NWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML 257
             V     +  +                L  +   C    PA RP       +L
Sbjct: 251 --VIYYVRDGNILACPENC------PLELYNLMRLCWSKLPADRPSFCSIHRIL 296

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.0 bits (223), Expect = 5e-22
 Identities = 41/187 (21%), Positives = 66/187 (35%), Gaps = 24/187 (12%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
              G++  ++    ER    +Q   +       + YLH   +  I+H D+K  NIL    
Sbjct: 91  CAGGAVDAVM-LELERPLTESQIQVVCKQTLDALNYLH---DNKIIHRDLKAGNILFTLD 146

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKG---YMAPEC-----YKRTPISVKADVYGYGIVLL 182
              K+ DFG++              G   +MAPE       K  P   KADV+  GI L+
Sbjct: 147 GDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLI 206

Query: 183 ETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQ 242
           E              P   +    V       E   L + ++    N ++ +K    C++
Sbjct: 207 EMAEIE--------PPHHELNPMRVLLKIAKSEPPTLAQPSRWS-SNFKDFLK---KCLE 254

Query: 243 DEPALRP 249
                R 
Sbjct: 255 KNVDARW 261

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.2 bits (213), Expect = 1e-20
 Identities = 39/183 (21%), Positives = 70/183 (38%), Gaps = 23/183 (12%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +  GSLTD++    E      Q   +  +  + + +LH      ++H DIK  NIL+   
Sbjct: 99  LAGGSLTDVVT---ETCMDEGQIAAVCRECLQALEFLHSNQ---VIHRDIKSDNILLGMD 152

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETICC 187
            + K+ DFG       +        G   +MAPE   R     K D++  GI+ +E I  
Sbjct: 153 GSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEG 212

Query: 188 RK-NMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPA 246
               +  +  +   +I TN   +     +L+ + R          + +     C+  +  
Sbjct: 213 EPPYLNENPLRALYLIATNGTPELQNPEKLSAIFR----------DFLN---RCLDMDVE 259

Query: 247 LRP 249
            R 
Sbjct: 260 KRG 262

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.4 bits (211), Expect = 2e-20
 Identities = 42/166 (25%), Positives = 62/166 (37%), Gaps = 21/166 (12%)

Query: 90  WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFV 149
                R    +  G++YLH      I H DIKP+N+L+DE    KI DFGLA +   +  
Sbjct: 102 EPDAQRFFHQLMAGVVYLHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVFRYNNR 158

Query: 150 IDKRDK-----GYMAPECYKRTPI-SVKADVYGYGIVLLETICCRKNMEIDASKPEEIIL 203
               +K      Y+APE  KR    +   DV+  GIVL   +        D         
Sbjct: 159 ERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPW--DQPSDSCQEY 216

Query: 204 TNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP 249
           ++W  K        K+             L+      + + P+ R 
Sbjct: 217 SDWKEKKTYLNPWKKI-------DSAPLALLH---KILVENPSARI 252

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.0 bits (212), Expect = 2e-20
 Identities = 38/193 (19%), Positives = 76/193 (39%), Gaps = 27/193 (13%)

Query: 73  NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT 132
            G L D +    +        +   + +AKG+ YL    +  ++H D+  +N+L+     
Sbjct: 94  FGCLLDYVREHKDNIG-SQYLLNWCVQIAKGMNYL---EDRRLVHRDLAARNVLVKTPQH 149

Query: 133 AKILDFGLAKLPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGYGIVLLETICC 187
            KI DFGLAKL   +      + G     +MA E       + ++DV+ YG+ + E +  
Sbjct: 150 VKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWE-LMT 208

Query: 188 RKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNL--ENLVKVGLWCVQDEP 245
             +   D     EI               + L +G ++ +  +   ++  + + C   + 
Sbjct: 209 FGSKPYDGIPASEIS--------------SILEKGERLPQPPICTIDVYMIMVKCWMIDA 254

Query: 246 ALRP-MKCAVMML 257
             RP  +  ++  
Sbjct: 255 DSRPKFRELIIEF 267

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 85.0 bits (210), Expect = 4e-20
 Identities = 34/163 (20%), Positives = 55/163 (33%), Gaps = 20/163 (12%)

Query: 90  WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFV 149
             +   +     +G+ YLH      ++H D+K  NIL+ E    K+ DFG A +      
Sbjct: 114 EVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANS 170

Query: 150 IDKRDKGYMAPE---CYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNW 206
                  +MAPE            K DV+  GI  +E    +  +    +      +   
Sbjct: 171 F-VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQN 229

Query: 207 VYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP 249
                 +   ++  R          N V     C+Q  P  RP
Sbjct: 230 ESPALQSGHWSEYFR----------NFVD---SCLQKIPQDRP 259

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.9 bits (209), Expect = 6e-20
 Identities = 36/174 (20%), Positives = 68/174 (39%), Gaps = 21/174 (12%)

Query: 90  WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKL--PNED 147
               +  +  VAKG+ +L        +H D+  +NIL+      KI DFGLA+    + +
Sbjct: 144 LEDLLSFSYQVAKGMAFLA---SKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSN 200

Query: 148 FVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILT 204
           +V+    +    +MAPE       + ++DV+ YGI L E      +         +    
Sbjct: 201 YVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYK- 259

Query: 205 NWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML 257
                  + +E  +++       +    +  +   C   +P  RP  K  V ++
Sbjct: 260 -------MIKEGFRMLSPEHAPAE----MYDIMKTCWDADPLKRPTFKQIVQLI 302

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.0 bits (207), Expect = 7e-20
 Identities = 41/194 (21%), Positives = 71/194 (36%), Gaps = 23/194 (11%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
              GSL D +              R A+ VA+G+ YL        +H D+  +N+L+   
Sbjct: 92  APLGSLLDRLRKHQGHFL-LGTLSRYAVQVAEGMGYLE---SKRFIHRDLAARNLLLATR 147

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDK------GYMAPECYKRTPISVKADVYGYGIVLLET 184
              KI DFGL +   ++       +       + APE  K    S  +D + +G+ L E 
Sbjct: 148 DLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEM 207

Query: 185 ICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDE 244
               +   I  +  + +          I++E  +L R         +++  V + C   +
Sbjct: 208 FTYGQEPWIGLNGSQILHK--------IDKEGERLPRPEDCP----QDIYNVMVQCWAHK 255

Query: 245 PALRP-MKCAVMML 257
           P  RP        L
Sbjct: 256 PEDRPTFVALRDFL 269

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 84.7 bits (209), Expect = 1e-19
 Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 8/122 (6%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM--D 128
           +  G L + +     +    ++ V     V KG+ ++H+      +H D+KP+NI+    
Sbjct: 105 MSGGELFEKVADEHNKMS-EDEAVEYMRQVCKGLCHMHENN---YVHLDLKPENIMFTTK 160

Query: 129 EFWTAKILDFGLAKL--PNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC 186
                K++DFGL     P +   +      + APE  +  P+    D++  G++    + 
Sbjct: 161 RSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLS 220

Query: 187 CR 188
             
Sbjct: 221 GL 222

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.4 bits (205), Expect = 2e-19
 Identities = 42/174 (24%), Positives = 68/174 (39%), Gaps = 21/174 (12%)

Query: 90  WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFV 149
               +  +  VAKG+ +L        +H D+  +NIL+ E    KI DFGLA+   +D  
Sbjct: 133 LEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPD 189

Query: 150 IDKRDK-----GYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILT 204
             ++        +MAPE       ++++DV+ +G++L E      +        EE    
Sbjct: 190 YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFC-- 247

Query: 205 NWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML 257
                    R L +  R    D      + +  L C   EP+ RP     V  L
Sbjct: 248 ---------RRLKEGTRMRAPD-YTTPEMYQTMLDCWHGEPSQRPTFSELVEHL 291

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.8 bits (204), Expect = 3e-19
 Identities = 33/144 (22%), Positives = 55/144 (38%), Gaps = 5/144 (3%)

Query: 81  FCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGL 140
                +          A +V    L L       I++ D+KP+NIL+D+    KI DFG 
Sbjct: 94  LLRKSQRFPNPVAKFYAAEVC---LALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGF 150

Query: 141 AKLPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRK--NMEIDASKP 198
           AK   +          Y+APE     P +   D + +GI++ E +               
Sbjct: 151 AKYVPDVTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTY 210

Query: 199 EEIILTNWVYKCFINRELNKLVRG 222
           E+I+     +  F N ++  L+  
Sbjct: 211 EKILNAELRFPPFFNEDVKDLLSR 234

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.0 bits (199), Expect = 1e-18
 Identities = 36/192 (18%), Positives = 66/192 (34%), Gaps = 22/192 (11%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
              G L   +             +  A  ++  + YL        +H DI  +N+L+   
Sbjct: 89  CTLGELRSFLQVRKYSLD-LASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSN 144

Query: 131 WTAKILDFGLAK-LPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETIC 186
              K+ DFGL++ + +  +    + K    +MAPE       +  +DV+ +G+ + E + 
Sbjct: 145 DCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILM 204

Query: 187 CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPA 246
                     KP + +  N V     N E   +             L  +   C   +P+
Sbjct: 205 HGV-------KPFQGVKNNDVIGRIENGERLPM------PPNCPPTLYSLMTKCWAYDPS 251

Query: 247 LRP-MKCAVMML 257
            RP        L
Sbjct: 252 RRPRFTELKAQL 263

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.7 bits (198), Expect = 2e-18
 Identities = 42/207 (20%), Positives = 69/207 (33%), Gaps = 36/207 (17%)

Query: 71  VRNGSLTDIIFC--------------SAERNPYWNQRVRIALDVAKGILYLHDECEPPIL 116
              G+L + +                + E        V  A  VA+G+ YL        +
Sbjct: 101 ASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA---SKKCI 157

Query: 117 HCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK-----GYMAPECYKRTPISVK 171
           H D+  +N+L+ E    KI DFGLA+  +      K         +MAPE       + +
Sbjct: 158 HRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQ 217

Query: 172 ADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLE 231
           +DV+ +G++L E      +       P   +    ++K                      
Sbjct: 218 SDVWSFGVLLWEIFTLGGS-------PYPGVPVEELFKLLKEGHRMDK------PSNCTN 264

Query: 232 NLVKVGLWCVQDEPALRP-MKCAVMML 257
            L  +   C    P+ RP  K  V  L
Sbjct: 265 ELYMMMRDCWHAVPSQRPTFKQLVEDL 291

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.7 bits (196), Expect = 3e-18
 Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 10/123 (8%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
            +NG L   I      +             A+ +  L       I+H D+KP+NIL++E 
Sbjct: 90  AKNGELLKYIRKIGSFDETC-----TRFYTAEIVSALEYLHGKGIIHRDLKPENILLNED 144

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDK-----GYMAPECYKRTPISVKADVYGYGIVLLETI 185
              +I DFG AK+ + +    + +       Y++PE          +D++  G ++ + +
Sbjct: 145 MHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLV 204

Query: 186 CCR 188
              
Sbjct: 205 AGL 207

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.6 bits (193), Expect = 2e-17
 Identities = 35/159 (22%), Positives = 61/159 (38%), Gaps = 12/159 (7%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +  G L   +  S             A ++  G+ ++H+     +++ D+KP NIL+DE 
Sbjct: 89  MNGGDLHYHL--SQHGVFSEADMRFYAAEIILGLEHMHNRF---VVYRDLKPANILLDEH 143

Query: 131 WTAKILDFGLAK-LPNEDFVIDKRDKGYMAPECYKR-TPISVKADVYGYGIVLLETICCR 188
              +I D GLA     +         GYMAPE  ++       AD +  G +L + +   
Sbjct: 144 GHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGH 203

Query: 189 KNMEIDASKPEEIILTNWVYKCF-----INRELNKLVRG 222
                  +K +  I    +          + EL  L+ G
Sbjct: 204 SPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEG 242

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.0 bits (191), Expect = 2e-17
 Identities = 39/201 (19%), Positives = 75/201 (37%), Gaps = 30/201 (14%)

Query: 71  VRNGSLTDIIFC--------SAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKP 122
           +  G L   +               P  ++ +++A ++A G   +        +H D+  
Sbjct: 105 MTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADG---MAYLNANKFVHRDLAA 161

Query: 123 QNILMDEFWTAKILDFGLAKLPNEDFVIDKRDKG-----YMAPECYKRTPISVKADVYGY 177
           +N ++ E +T KI DFG+ +   E     K  KG     +M+PE  K    +  +DV+ +
Sbjct: 162 RNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSF 221

Query: 178 GIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVG 237
           G+VL E     +        P + +    V +  +   L              + L ++ 
Sbjct: 222 GVVLWEIATLAEQ-------PYQGLSNEQVLRFVMEGGLLDKPDNC------PDMLFELM 268

Query: 238 LWCVQDEPALRP-MKCAVMML 257
             C Q  P +RP     +  +
Sbjct: 269 RMCWQYNPKMRPSFLEIISSI 289

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.8 bits (191), Expect = 3e-17
 Identities = 32/184 (17%), Positives = 63/184 (34%), Gaps = 15/184 (8%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +  G L   I    ++     +   I   + + I YLH      I H D+KP+N+L    
Sbjct: 91  LDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSIN---IAHRDVKPENLLYTSK 147

Query: 131 W---TAKILDFGLAKLPNEDFVIDKRDK--GYMAPECYKRTPISVKADVYGYGIVLLETI 185
                 K+ DFG AK       +        Y+APE           D++  G+++   +
Sbjct: 148 RPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILL 207

Query: 186 CCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEP 245
           C       +      + ++  +       +            + ++ L++     ++ EP
Sbjct: 208 CGYPPFYSN----HGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIR---NLLKTEP 260

Query: 246 ALRP 249
             R 
Sbjct: 261 TQRM 264

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.5 bits (190), Expect = 3e-17
 Identities = 38/182 (20%), Positives = 67/182 (36%), Gaps = 23/182 (12%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +  G L   I    + +   ++    A ++  G+ +L       I++ D+K  NIL+D+ 
Sbjct: 85  LNGGDLMYHIQSCHKFD--LSRATFYAAEIILGLQFL---HSKGIVYRDLKLDNILLDKD 139

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETICC 187
              KI DFG+ K             G   Y+APE       +   D + +G++L E +  
Sbjct: 140 GHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIG 199

Query: 188 RKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPAL 247
           +          EE+  +  +   F  R L           K  ++L+         EP  
Sbjct: 200 Q--SPFHGQDEEELFHSIRMDNPFYPRWLE----------KEAKDLLV---KLFVREPEK 244

Query: 248 RP 249
           R 
Sbjct: 245 RL 246

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 76.6 bits (188), Expect = 7e-17
 Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 8/122 (6%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           +  G L D I     +     + +       +G+ ++H   E  I+H DIKP+NI+ +  
Sbjct: 108 LSGGELFDRIAAEDYKMS-EAEVINYMRQACEGLKHMH---EHSIVHLDIKPENIMCETK 163

Query: 131 --WTAKILDFGLAKL--PNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC 186
              + KI+DFGLA    P+E   +      + APE   R P+    D++  G++    + 
Sbjct: 164 KASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLS 223

Query: 187 CR 188
             
Sbjct: 224 GL 225

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 75.1 bits (184), Expect = 1e-16
 Identities = 26/126 (20%), Positives = 53/126 (42%), Gaps = 13/126 (10%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           ++ G L D +  + +      +  +I   + + I  LH      I+H D+KP+NIL+D+ 
Sbjct: 92  MKKGELFDYL--TEKVTLSEKETRKIMRALLEVICALHKLN---IVHRDLKPENILLDDD 146

Query: 131 WTAKILDFGLAKLPNEDFVIDKR--DKGYMAPECY------KRTPISVKADVYGYGIVLL 182
              K+ DFG +   +    + +      Y+APE               + D++  G+++ 
Sbjct: 147 MNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMY 206

Query: 183 ETICCR 188
             +   
Sbjct: 207 TLLAGS 212

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 72.9 bits (178), Expect = 8e-16
 Identities = 33/185 (17%), Positives = 68/185 (36%), Gaps = 22/185 (11%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF 130
           V   +L DI+    E      + + +  D  + + +     +  I+H D+KP NI++   
Sbjct: 93  VDGVTLRDIVHT--EGPMTPKRAIEVIADACQALNFS---HQNGIIHRDVKPANIMISAT 147

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDK------GYMAPECYKRTPISVKADVYGYGIVLLET 184
              K++DFG+A+   +      +         Y++PE  +   +  ++DVY  G VL E 
Sbjct: 148 NAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEV 207

Query: 185 ICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDE 244
           +            P  +   +           ++ +        +L+ +V      +   
Sbjct: 208 LTGEPPF--TGDSPVSVAYQHVREDPIPPSARHEGL------SADLDAVVL---KALAKN 256

Query: 245 PALRP 249
           P  R 
Sbjct: 257 PENRY 261

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.0 bits (178), Expect = 1e-15
 Identities = 38/187 (20%), Positives = 60/187 (32%), Gaps = 20/187 (10%)

Query: 80  IFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFG 139
           I          +      L   +G+ YLH      ILH D+KP N+L+DE    K+ DFG
Sbjct: 89  IIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHW---ILHRDLKPNNLLLDENGVLKLADFG 145

Query: 140 LAKLPNEDFVIDKRDKG---YMAPECYKR-TPISVKADVYGYGIVLLETIC--------- 186
           LAK                 Y APE         V  D++  G +L E +          
Sbjct: 146 LAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDS 205

Query: 187 ----CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQ 242
                 +  E   +  EE          ++  +    +    +     ++L+ +      
Sbjct: 206 DLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFL 265

Query: 243 DEPALRP 249
             P  R 
Sbjct: 266 FNPCARI 272

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.6 bits (177), Expect = 1e-15
 Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 5/118 (4%)

Query: 73  NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT 132
           +  LT  +    E          +   + +G+ +LH      ++H D+KPQNIL+     
Sbjct: 98  DQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHR---VVHRDLKPQNILVTSSGQ 154

Query: 133 AKILDFGLAKLPNEDFVIDKR--DKGYMAPECYKRTPISVKADVYGYGIVLLETICCR 188
            K+ DFGLA++ +    +        Y APE   ++  +   D++  G +  E    +
Sbjct: 155 IKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRK 212

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.4 bits (177), Expect = 2e-15
 Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 8/122 (6%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD-- 128
           +    + + I  SA       + V     V + + +LH      I H DI+P+NI+    
Sbjct: 83  ISGLDIFERINTSAFELN-EREIVSYVHQVCEALQFLH---SHNIGHFDIRPENIIYQTR 138

Query: 129 EFWTAKILDFGLAKL--PNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC 186
              T KI++FG A+   P ++F +      Y APE ++   +S   D++  G ++   + 
Sbjct: 139 RSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLS 198

Query: 187 CR 188
             
Sbjct: 199 GI 200

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.3 bits (174), Expect = 3e-15
 Identities = 40/180 (22%), Positives = 63/180 (35%), Gaps = 27/180 (15%)

Query: 73  NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD-EFW 131
                   F +                V + + +        +LH DIK +NIL+D    
Sbjct: 92  EPVQDLFDFITERGALQEELARSFFWQVLEAVRHC---HNCGVLHRDIKDENILIDLNRG 148

Query: 132 TAKILDFGLAKLPNEDFVIDKR-DKGYMAPECYKRTP-ISVKADVYGYGIVLLETICCRK 189
             K++DFG   L  +    D    + Y  PE  +        A V+  GI+L + +C   
Sbjct: 149 ELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI 208

Query: 190 NMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP 249
             E D    EEII     ++  ++ E   L+R                 WC+   P+ RP
Sbjct: 209 PFEHD----EEIIRGQVFFRQRVSSECQHLIR-----------------WCLALRPSDRP 247

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 69.5 bits (169), Expect = 1e-14
 Identities = 31/189 (16%), Positives = 59/189 (31%), Gaps = 23/189 (12%)

Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILM---DEF 130
           G   + +F    R       + +A  +   I Y+H +     +H D+KP N LM    + 
Sbjct: 86  GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKN---FIHRDVKPDNFLMGLGKKG 142

Query: 131 WTAKILDFGLAKLPNEDFVIDKRDK----------GYMAPECYKRTPISVKADVYGYGIV 180
               I+DFGLAK   +                    Y +   +     S + D+   G V
Sbjct: 143 NLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYV 202

Query: 181 LLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWC 240
           L+         +   +  +         +  ++  +  L +G           +    +C
Sbjct: 203 LMYFNLGSLPWQGLKAATKRQKYERI-SEKKMSTPIEVLCKGY---PSEFATYLN---FC 255

Query: 241 VQDEPALRP 249
                  +P
Sbjct: 256 RSLRFDDKP 264

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 69.1 bits (168), Expect = 2e-14
 Identities = 27/191 (14%), Positives = 53/191 (27%), Gaps = 25/191 (13%)

Query: 74  GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT- 132
           G   + +     R          A  +   +  +H   E  +++ DIKP N L+    + 
Sbjct: 84  GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIH---EKSLVYRDIKPDNFLIGRPNSK 140

Query: 133 ----AKILDFGLAKLPNEDFVIDKRDK----------GYMAPECYKRTPISVKADVYGYG 178
                 ++DFG+ K   +                    YM+   +     S + D+   G
Sbjct: 141 NANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALG 200

Query: 179 IVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGL 238
            V +  +      +              + +   +  L +L  G        E   K   
Sbjct: 201 HVFMYFLRGSLPWQ-GLKAATNKQKYERIGEKKQSTPLRELCAGFP------EEFYKYMH 253

Query: 239 WCVQDEPALRP 249
           +         P
Sbjct: 254 YARNLAFDATP 264

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (168), Expect = 2e-14
 Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 7/120 (5%)

Query: 73  NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWT 132
           +  L   +  SA               + +G+ + H      +LH D+KPQN+L++    
Sbjct: 84  HQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHR---VLHRDLKPQNLLINTEGA 140

Query: 133 AKILDFGLAKL---PNEDFVIDKRDKGYMAPECYKRTP-ISVKADVYGYGIVLLETICCR 188
            K+ DFGLA+    P   +  +     Y APE        S   D++  G +  E +  R
Sbjct: 141 IKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 200

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.1 bits (168), Expect = 3e-14
 Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 3/99 (3%)

Query: 90  WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFV 149
                  A  +     YLH      +++ D+KP+N+L+D+    ++ DFG AK       
Sbjct: 140 EPHARFYAAQIVLTFEYLHSLD---LIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTW 196

Query: 150 IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCR 188
                   +APE       +   D +  G+++ E     
Sbjct: 197 TLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGY 235

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (166), Expect = 6e-14
 Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 10/106 (9%)

Query: 90  WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFV 149
            +        + +G+ Y+H      +LH D+KP N+L++     KI DFGLA++ + D  
Sbjct: 108 NDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHD 164

Query: 150 IDKR------DKGYMAPEC-YKRTPISVKADVYGYGIVLLETICCR 188
                      + Y APE        +   D++  G +L E +  R
Sbjct: 165 HTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNR 210

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (165), Expect = 7e-14
 Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 3/106 (2%)

Query: 86  RNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN 145
                    R     A+ +  L       +++ DIK +N+++D+    KI DFGL K   
Sbjct: 97  SRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGI 156

Query: 146 EDFVIDKRDKG---YMAPECYKRTPISVKADVYGYGIVLLETICCR 188
            D    K   G   Y+APE  +        D +G G+V+ E +C R
Sbjct: 157 SDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGR 202

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.0 bits (163), Expect = 1e-13
 Identities = 32/121 (26%), Positives = 46/121 (38%), Gaps = 6/121 (4%)

Query: 71  VRNGSLTDIIFCSAERNPY-WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE 129
           V  G L D I    E+  Y      R+   V   + YLHD                 +DE
Sbjct: 89  VSGGELFDRI---VEKGFYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDE 145

Query: 130 FWTAKILDFGLAKLPNEDFVIDKR--DKGYMAPECYKRTPISVKADVYGYGIVLLETICC 187
                I DFGL+K+ +   V+       GY+APE   + P S   D +  G++    +C 
Sbjct: 146 DSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCG 205

Query: 188 R 188
            
Sbjct: 206 Y 206

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (161), Expect = 3e-13
 Identities = 31/123 (25%), Positives = 45/123 (36%), Gaps = 8/123 (6%)

Query: 71  VRNGSLTDIIFCSAERNPY-WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNI-LMD 128
           V           S  +              + + + Y+H      I H DIKPQN+ L  
Sbjct: 101 VPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFG---ICHRDIKPQNLLLDP 157

Query: 129 EFWTAKILDFGLAKL--PNEDFVIDKRDKGYMAP-ECYKRTPISVKADVYGYGIVLLETI 185
           +    K+ DFG AK     E  V     + Y AP   +  T  +   DV+  G VL E +
Sbjct: 158 DTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELL 217

Query: 186 CCR 188
             +
Sbjct: 218 LGQ 220

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (156), Expect = 8e-13
 Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 7/113 (6%)

Query: 81  FCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGL 140
           F S   +            + KG+ + H      +LH D+KPQN+L++     K+ +FGL
Sbjct: 91  FDSCNGDLDPEIVKSFLFQLLKGLGFCHSRN---VLHRDLKPQNLLINRNGELKLANFGL 147

Query: 141 AKL---PNEDFVIDKRDKGYMAPECYKRTPI-SVKADVYGYGIVLLETICCRK 189
           A+    P   +  +     Y  P+      + S   D++  G +  E     +
Sbjct: 148 ARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGR 200

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (157), Expect = 9e-13
 Identities = 34/180 (18%), Positives = 63/180 (35%), Gaps = 26/180 (14%)

Query: 90  WNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFV 149
            ++   +   + KG+ Y+H        H D+KP N+ ++E    KILDFGLA+  + +  
Sbjct: 120 EDRIQFLVYQMLKGLRYIHAAGII---HRDLKPGNLAVNEDCELKILDFGLARQADSEMT 176

Query: 150 IDKRDKGYMAPECY-KRTPISVKADVYGYGIVLLETICCR-------------KNMEIDA 195
                + Y APE        +   D++  G ++ E I  +             + M++  
Sbjct: 177 GYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTG 236

Query: 196 SKPEEII------LTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP 249
           + P E +            K     E                NL++     +  +   R 
Sbjct: 237 TPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLE---KMLVLDAEQRV 293

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.2 bits (153), Expect = 3e-12
 Identities = 24/114 (21%), Positives = 48/114 (42%), Gaps = 9/114 (7%)

Query: 81  FCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTA----KIL 136
           F + + +    +       +  G   ++      I H D+KP+NI++ +        KI+
Sbjct: 103 FLAEKESLTEEEATEFLKQILNG---VYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKII 159

Query: 137 DFGLAKL--PNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCR 188
           DFGLA       +F        ++APE     P+ ++AD++  G++    +   
Sbjct: 160 DFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGA 213

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 62.6 bits (151), Expect = 4e-12
 Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 7/108 (6%)

Query: 85  ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKL- 143
           E            L +  GI Y H   +  +LH D+KPQN+L++     KI DFGLA+  
Sbjct: 94  EGGLESVTAKSFLLQLLNGIAYCH---DRRVLHRDLKPQNLLINREGELKIADFGLARAF 150

Query: 144 --PNEDFVIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCR 188
             P   +  +     Y AP+    +   S   D++  G +  E +   
Sbjct: 151 GIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGT 198

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (149), Expect = 1e-11
 Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 4/105 (3%)

Query: 85  ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLP 144
            +    +    +   + +G+ Y+H      I+H D+KP N+ ++E    KILDFGLA+  
Sbjct: 115 CQKLTDDHVQFLIYQILRGLKYIHSAD---IIHRDLKPSNLAVNEDCELKILDFGLARHT 171

Query: 145 NEDFVIDKRDKGYMAPECY-KRTPISVKADVYGYGIVLLETICCR 188
           +++       + Y APE        +   D++  G ++ E +  R
Sbjct: 172 DDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 216

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.6 bits (148), Expect = 1e-11
 Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 8/117 (6%)

Query: 78  DIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE------FW 131
            +I     R        +I+  +  G+ Y+H      I+H DIKP+N+LM+         
Sbjct: 112 ALIKKYEHRGIPLIYVKQISKQLLLGLDYMH--RRCGIIHTDIKPENVLMEIVDSPENLI 169

Query: 132 TAKILDFGLAKLPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCR 188
             KI D G A   +E +    + + Y +PE     P    AD++    ++ E I   
Sbjct: 170 QIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGD 226

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (143), Expect = 5e-11
 Identities = 23/117 (19%), Positives = 40/117 (34%), Gaps = 11/117 (9%)

Query: 80  IFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFG 139
           +  +       ++  R+   +  G   L+      ILH D+K  N+L+      K+ DFG
Sbjct: 106 LLSNVLVKFTLSEIKRVMQMLLNG---LYYIHRNKILHRDMKAANVLITRDGVLKLADFG 162

Query: 140 LAKLPNEDFVIDKRDK-------GYMAPECY-KRTPISVKADVYGYGIVLLETICCR 188
           LA+  +                  Y  PE            D++G G ++ E     
Sbjct: 163 LARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRS 219

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (132), Expect = 1e-09
 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 5/106 (4%)

Query: 85  ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLP 144
           +      +   +   +  GI +LH      I+H D+KP NI++    T KILDFGLA+  
Sbjct: 113 QMELDHERMSYLLYQMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTA 169

Query: 145 NEDFVIDKRD--KGYMAPECYKRTPISVKADVYGYGIVLLETICCR 188
              F++      + Y APE           D++  G ++ E +  +
Sbjct: 170 GTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHK 215

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 55.2 bits (132), Expect = 1e-09
 Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 12/122 (9%)

Query: 71  VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD-E 129
           V N     +      +            ++ K + Y H      I+H D+KP N+++D E
Sbjct: 114 VNNTDFKQLY-----QTLTDYDIRFYMYEILKALDYCHSMG---IMHRDVKPHNVMIDHE 165

Query: 130 FWTAKILDFGLAKL--PNEDFVIDKRDKGYMAPECYKRTP-ISVKADVYGYGIVLLETIC 186
               +++D+GLA+   P +++ +    + +  PE            D++  G +L   I 
Sbjct: 166 HRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIF 225

Query: 187 CR 188
            +
Sbjct: 226 RK 227

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (128), Expect = 4e-09
 Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 6/100 (6%)

Query: 95  RIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKL----PNEDFVI 150
            + + V + +L L    +  I++ DIK +NIL+D      + DFGL+K       E    
Sbjct: 130 EVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYD 189

Query: 151 DKRDKGYMAPECY--KRTPISVKADVYGYGIVLLETICCR 188
                 YMAP+      +      D +  G+++ E +   
Sbjct: 190 FCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGA 229

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 49.4 bits (117), Expect = 6e-08
 Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 4/71 (5%)

Query: 72  RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW 131
            N  L ++I               +   + + +   +      I+H D+   N+L+ E  
Sbjct: 84  GNAVLMELIDAKELYRVRVENPDEVLDMILEEVAKFYHRG---IVHGDLSQYNVLVSE-E 139

Query: 132 TAKILDFGLAK 142
              I+DF  + 
Sbjct: 140 GIWIIDFPQSV 150

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	257
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.73
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	97.58
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	97.25
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	93.59
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	93.45
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	91.24

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-48  Score=323.37  Aligned_cols=229  Identities=17%  Similarity=0.229  Sum_probs=178.8

Q ss_pred             cccccceeeecccCCCCCeeeccc--------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCC
Q 044568            3 CTKLSNFYRSSFNARNSPWISRVS--------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNG   74 (257)
Q Consensus         3 ~~~~~~~y~~~~~~~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~g   74 (257)
                      .+.|+.||+|.+.+++.++||.+.        |.+|++.+.         +++|+||+++.+++...+..++|||||++|
T Consensus        15 ~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~E~~~l~---------~l~HpnIv~~~g~~~~~~~~~lv~E~~~~g   85 (263)
T d1sm2a_          15 SGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMM---------KLSHPKLVQLYGVCLEQAPICLVFEFMEHG   85 (263)
T ss_dssp             CCSSCCEEEEEETTTEEEEEEECCSSSSCHHHHHHHHHHHH---------HCCCTTBCCEEEEECSSSSCEEEEECCTTC
T ss_pred             eCCCeEEEEEEECCCCEEEEEEECCCcCcHHHHHHHHHHHH---------hcCCCCcccccceeccCCceEEEEEecCCC
Confidence            467999999999888889998754        455666666         889999999999999999999999999999


Q ss_pred             CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc----cc
Q 044568           75 SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF----VI  150 (257)
Q Consensus        75 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~----~~  150 (257)
                      +|.+++.. ....+++..+..++.|++.||.|||++   +|+||||||+||+++.++.+||+|||+++......    ..
T Consensus        86 ~L~~~l~~-~~~~~~~~~~~~i~~qia~gl~~lH~~---~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~  161 (263)
T d1sm2a_          86 CLSDYLRT-QRGLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTG  161 (263)
T ss_dssp             BHHHHHHT-TTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCTTCSGGGEEECGGGCEEECSCC---------------
T ss_pred             cHHHHhhc-cccCCCHHHHHHHHHHHHHHHHhhhcc---ceeecccchhheeecCCCCeEecccchheeccCCCceeecc
Confidence            99999976 567799999999999999999999999   99999999999999999999999999987543322    33


Q ss_pred             ccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHH
Q 044568          151 DKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNL  230 (257)
Q Consensus       151 ~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (257)
                      ..+|+.|+|||.+.+..++.++|||||||++|||+|+..||......  .......          ... .....+..++
T Consensus       162 ~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~~~--~~~~~~i----------~~~-~~~~~p~~~~  228 (263)
T d1sm2a_         162 TKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN--SEVVEDI----------STG-FRLYKPRLAS  228 (263)
T ss_dssp             ---CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSCCH--HHHHHHH----------HHT-CCCCCCTTSC
T ss_pred             eecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCCCCH--HHHHHHH----------Hhc-CCCCCccccC
Confidence            46788999999999999999999999999999999954444322111  1111110          010 0112344556


Q ss_pred             HHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          231 ENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       231 ~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      +.+.+++.+||+.||++|| ++||++.|
T Consensus       229 ~~l~~li~~cl~~~p~~Rps~~~il~~L  256 (263)
T d1sm2a_         229 THVYQIMNHCWKERPEDRPAFSRLLRQL  256 (263)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             HHHHHHHHHHccCCHhHCcCHHHHHHHH
Confidence            7899999999999999999 99999865

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-48  Score=324.26  Aligned_cols=229  Identities=23%  Similarity=0.324  Sum_probs=177.7

Q ss_pred             ccccceeeecccCCCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +.|+.||+|++..  .+++|.+.           |.+|++.+.         +++|+||+++.+++. .+..+||||||+
T Consensus        19 G~fg~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~~~~E~~~l~---------~l~HpnIv~~~~~~~-~~~~~lv~Ey~~   86 (276)
T d1uwha_          19 GSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLR---------KTRHVNILLFMGYST-APQLAIVTQWCE   86 (276)
T ss_dssp             CSSCEEEEEESSS--EEEEEECCCSSCCTTHHHHHHHHHHHHT---------TCCCTTBCCEEEEEC-SSSCEEEEECCC
T ss_pred             CCCcEEEEEEECC--EEEEEEEEcccCCHHHHHHHHHHHHHHH---------hCCCCCEeeeeEEEe-ccEEEEEEecCC
Confidence            6799999998754  48888653           234444444         889999999998764 456899999999


Q ss_pred             CCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC-----
Q 044568           73 NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED-----  147 (257)
Q Consensus        73 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~-----  147 (257)
                      +|+|.+++.. ....+++.++..++.|++.||.|||++   +|+||||||+|||++.++.+||+|||+++.....     
T Consensus        87 ~g~L~~~l~~-~~~~~~~~~~~~i~~qi~~gl~yLH~~---~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~~~~~~  162 (276)
T d1uwha_          87 GSSLYHHLHI-IETKFEMIKLIDIARQTAQGMDYLHAK---SIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQ  162 (276)
T ss_dssp             EEEHHHHHHT-SCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTSSEEECCCCCSCC---------
T ss_pred             CCCHHHHHhh-ccCCCCHHHHHHHHHHHHHHHHHHhcC---CEeccccCHHHEEEcCCCCEEEccccceeeccccCCccc
Confidence            9999999975 556799999999999999999999999   9999999999999999999999999998754322     


Q ss_pred             cccccCCCCccCcccccC---CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCC
Q 044568          148 FVIDKRDKGYMAPECYKR---TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTK  224 (257)
Q Consensus       148 ~~~~~~~~~~~aPE~~~~---~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (257)
                      .....||+.|+|||++..   ..++.++|||||||++|||+||+.||.......   ............+..      ..
T Consensus       163 ~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~~~~---~~~~~~~~~~~~p~~------~~  233 (276)
T d1uwha_         163 FEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRD---QIIFMVGRGYLSPDL------SK  233 (276)
T ss_dssp             ---CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHH---HHHHHHHHTSCCCCG------GG
T ss_pred             ccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCCCChHH---HHHHHHhcCCCCCcc------hh
Confidence            234578899999999864   358999999999999999999999997542211   111111111111110      12


Q ss_pred             CCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          225 VDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       225 ~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      .+...++.+.+++.+||+.||.+|| ++||++.|
T Consensus       234 ~~~~~~~~l~~li~~cl~~dp~~RPt~~~il~~L  267 (276)
T d1uwha_         234 VRSNCPKAMKRLMAECLKKKRDERPLFPQILASI  267 (276)
T ss_dssp             SCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHH
Confidence            3445667899999999999999999 99998764

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.8e-48  Score=325.96  Aligned_cols=227  Identities=19%  Similarity=0.244  Sum_probs=173.9

Q ss_pred             ccccceeeecccCCCC----Ceeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEe
Q 044568            4 TKLSNFYRSSFNARNS----PWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIER   69 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~----~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E   69 (257)
                      +.|+.||+|+....+.    +++|...          |.+|++.+.         +++|+||+++.+++...+..++|||
T Consensus        37 G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~---------~l~HpnIv~l~g~~~~~~~~~iv~E  107 (299)
T d1jpaa_          37 GEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMG---------QFDHPNVIHLEGVVTKSTPVMIITE  107 (299)
T ss_dssp             CSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHT---------TCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             CCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHH---------hCCCCCCccEEEEEeeCCEEEEEEE
Confidence            6789999999765443    5566532          345555555         8899999999999999999999999


Q ss_pred             ecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-
Q 044568           70 PVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-  148 (257)
Q Consensus        70 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-  148 (257)
                      ||++|+|.+++.. ....+++.++..++.|++.||.|||++   +++||||||+|||++.++.+||+|||+++...... 
T Consensus       108 y~~~g~L~~~~~~-~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~  183 (299)
T d1jpaa_         108 FMENGSLDSFLRQ-NDGQFTVIQLVGMLRGIAAGMKYLADM---NYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTS  183 (299)
T ss_dssp             CCTTEEHHHHHHT-TTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC-----------
T ss_pred             ecCCCcceeeecc-ccCCCCHHHHHHHHHHHHHHHHHHhhC---CCccCccccceEEECCCCcEEECCcccceEccCCCC
Confidence            9999999999875 556799999999999999999999999   99999999999999999999999999997543222 


Q ss_pred             -------ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhh
Q 044568          149 -------VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLV  220 (257)
Q Consensus       149 -------~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (257)
                             ....+|+.|+|||.+.+..++.++|||||||++|||+| |+.||......    .+...         +..- 
T Consensus       184 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~~~----~~~~~---------i~~~-  249 (299)
T d1jpaa_         184 DPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQ----DVINA---------IEQD-  249 (299)
T ss_dssp             ------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH----HHHHH---------HHTT-
T ss_pred             cceeeecccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCCCCCHH----HHHHH---------HHcC-
Confidence                   12346778999999999999999999999999999998 89999754211    11110         0000 


Q ss_pred             cCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          221 RGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       221 ~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      .....+.+.++.+.+++.+||+.||++|| ++||++.|
T Consensus       250 ~~~~~~~~~~~~l~~li~~cl~~~P~~RPs~~ei~~~L  287 (299)
T d1jpaa_         250 YRLPPPMDCPSALHQLMLDCWQKDRNHRPKFGQIVNTL  287 (299)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHH
T ss_pred             CCCCCCccchHHHHHHHHHHcCCCHhHCcCHHHHHHHH
Confidence            01133455678899999999999999999 99998764

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.8e-48  Score=317.92  Aligned_cols=222  Identities=17%  Similarity=0.177  Sum_probs=184.0

Q ss_pred             ccccceeeecccC-CCCCeeeccc------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.|+.||+++... +..+++|.+.            +.+|++.+.         ++.|+||+++.+.+...+..+|||||
T Consensus        17 G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~---------~l~hpnIv~~~~~~~~~~~~~ivmEy   87 (263)
T d2j4za1          17 GKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQS---------HLRHPNILRLYGYFHDATRVYLILEY   87 (263)
T ss_dssp             CSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHH---------TCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             CCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHH---------hcCCCCCCeEEEEEEECCEEEEEEee
Confidence            6789999999764 5567787643            234444444         88999999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC-Ccc
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE-DFV  149 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~-~~~  149 (257)
                      |++|+|.+++.  ....+++.++..++.|+++||.|||++   +|+||||||+|||++.++.+||+|||++..... ...
T Consensus        88 ~~~g~L~~~l~--~~~~l~e~~~~~i~~qi~~al~~lH~~---~ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~~~~~  162 (263)
T d2j4za1          88 APLGTVYRELQ--KLSKFDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRT  162 (263)
T ss_dssp             CTTCBHHHHHH--HHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCSCSCCCCCCCE
T ss_pred             cCCCcHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeeeeccccceecCCCCEeecccceeeecCCCccc
Confidence            99999999997  446799999999999999999999999   999999999999999999999999999976543 335


Q ss_pred             cccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcC-CCCCHH
Q 044568          150 IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRG-TKVDKK  228 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  228 (257)
                      ...||+.|+|||.+.+..++.++|||||||++|||++|+.||.....   ......             .... ...+..
T Consensus       163 ~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~---~~~~~~-------------i~~~~~~~p~~  226 (263)
T d2j4za1         163 TLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTY---QETYKR-------------ISRVEFTFPDF  226 (263)
T ss_dssp             ETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSH---HHHHHH-------------HHTTCCCCCTT
T ss_pred             ccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCCCCH---HHHHHH-------------HHcCCCCCCcc
Confidence            56789999999999999999999999999999999999999975421   111111             1111 133445


Q ss_pred             HHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          229 NLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       229 ~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .++.+.+++.+||+.||++|| ++|+++
T Consensus       227 ~s~~~~~li~~~L~~dp~~R~t~~eil~  254 (263)
T d2j4za1         227 VTEGARDLISRLLKHNPSQRPMLREVLE  254 (263)
T ss_dssp             SCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             CCHHHHHHHHHHccCCHhHCcCHHHHHc
Confidence            567889999999999999999 999985

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.3e-48  Score=323.80  Aligned_cols=230  Identities=18%  Similarity=0.199  Sum_probs=187.2

Q ss_pred             cccccceeeecccC-CCCCeeeccc--------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCC
Q 044568            3 CTKLSNFYRSSFNA-RNSPWISRVS--------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRN   73 (257)
Q Consensus         3 ~~~~~~~y~~~~~~-~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~   73 (257)
                      .+.|+.||+|.... +..+|+|.+.        +.+|++.+.         +++|+||+++.+.+...+..+||||||++
T Consensus        27 ~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~E~~il~---------~l~HpnIv~~~~~~~~~~~~~iv~E~~~~   97 (287)
T d1opja_          27 GGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMK---------EIKHPNLVQLLGVCTREPPFYIITEFMTY   97 (287)
T ss_dssp             TTTTSSEEEEEEGGGTEEEEEEECCTTCSCHHHHHHHHHHHH---------HCCCTTBCCEEEEECSSSSCEEEEECCTT
T ss_pred             eCCCeEEEEEEECCCCeEEEEEEECCccchHHHHHHHHHHHH---------hCCCCCEecCCccEeeCCeeEEEeecccC
Confidence            46799999999765 5568888754        455666666         88999999999999999999999999999


Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc----c
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF----V  149 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~----~  149 (257)
                      |+|.+++.......+++..+..++.|++.||.|||++   +|+||||||+|||++.++.+||+|||+++......    .
T Consensus        98 g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~~---~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~~~~~~~~  174 (287)
T d1opja_          98 GNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA  174 (287)
T ss_dssp             CBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCCTTTCCSSSSEEET
T ss_pred             cchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHC---CcccCccccCeEEECCCCcEEEccccceeecCCCCceeec
Confidence            9999999876678899999999999999999999999   99999999999999999999999999998654332    2


Q ss_pred             cccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHH
Q 044568          150 IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKN  229 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (257)
                      ...+++.|+|||.+.+..++.++|||||||++|||++|..||.......   .......         .- .....+...
T Consensus       175 ~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~~~~---~~~~~i~---------~~-~~~~~~~~~  241 (287)
T d1opja_         175 GAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS---QVYELLE---------KD-YRMERPEGC  241 (287)
T ss_dssp             TEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTTCCHH---HHHHHHH---------TT-CCCCCCTTC
T ss_pred             cccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCcchHH---HHHHHHh---------cC-CCCCCCccc
Confidence            2346778999999999999999999999999999999877765332111   1111100         00 011344556


Q ss_pred             HHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          230 LENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       230 ~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ++.+.+++.+||+.||++|| ++|+++.|
T Consensus       242 ~~~l~~li~~cl~~dP~~Rps~~ei~~~L  270 (287)
T d1opja_         242 PEKVYELMRACWQWNPSDRPSFAEIHQAF  270 (287)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCCHhHCcCHHHHHHHH
Confidence            77899999999999999999 99998754

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-48  Score=322.59  Aligned_cols=227  Identities=17%  Similarity=0.258  Sum_probs=179.7

Q ss_pred             cccccceeeecccCCC---CCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEe
Q 044568            3 CTKLSNFYRSSFNARN---SPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIER   69 (257)
Q Consensus         3 ~~~~~~~y~~~~~~~~---~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E   69 (257)
                      .+.|+.||+|....++   .++||.+.          |.+|++.+.         +++|+||+++.+.+.. +..+||||
T Consensus        19 ~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~---------~l~HpnIv~l~g~~~~-~~~~lvmE   88 (285)
T d1u59a_          19 CGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMH---------QLDNPYIVRLIGVCQA-EALMLVME   88 (285)
T ss_dssp             CCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHH---------HCCCTTBCCEEEEEES-SSEEEEEE
T ss_pred             cccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHH---------hCCCCCEeeEeeeecc-CeEEEEEE
Confidence            3679999999865433   36777643          334555554         8899999999998864 56899999


Q ss_pred             ecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-
Q 044568           70 PVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-  148 (257)
Q Consensus        70 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-  148 (257)
                      ||++|+|.+++.. ....+++.++..++.|++.||.|||++   +++||||||+||+++.++.+||+|||+++...... 
T Consensus        89 ~~~~g~L~~~l~~-~~~~l~~~~~~~i~~qi~~gL~ylH~~---~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~  164 (285)
T d1u59a_          89 MAGGGPLHKFLVG-KREEIPVSNVAELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDS  164 (285)
T ss_dssp             CCTTEEHHHHHTT-CTTTSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSC
T ss_pred             eCCCCcHHHHhhc-cccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCcCchhheeeccCCceeeccchhhhccccccc
Confidence            9999999999865 556799999999999999999999999   99999999999999999999999999998654322 


Q ss_pred             -----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcC
Q 044568          149 -----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRG  222 (257)
Q Consensus       149 -----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (257)
                           ....+|+.|+|||.+....++.++|||||||++|||+| |+.||.......    +...         +... ..
T Consensus       165 ~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~~~~----~~~~---------i~~~-~~  230 (285)
T d1u59a_         165 YYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPE----VMAF---------IEQG-KR  230 (285)
T ss_dssp             EECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHH----HHHH---------HHTT-CC
T ss_pred             ccccccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCCCHHH----HHHH---------HHcC-CC
Confidence                 23356788999999998899999999999999999998 999997542111    1100         0000 01


Q ss_pred             CCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          223 TKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       223 ~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ...+...++.+.+++.+||+.||++|| +.+|++.|
T Consensus       231 ~~~p~~~~~~l~~li~~cl~~~p~~RPs~~~i~~~L  266 (285)
T d1u59a_         231 MECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRM  266 (285)
T ss_dssp             CCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHH
T ss_pred             CCCCCcCCHHHHHHHHHHcCCCHhHCcCHHHHHHHH
Confidence            134556678899999999999999999 99998754

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-47  Score=317.96  Aligned_cols=226  Identities=21%  Similarity=0.190  Sum_probs=182.1

Q ss_pred             ccccceeeeccc-CCCCCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +.|+.||+++.. +++.+++|.+.          +.+|++.+.         ++.|+||+++.+.+...+..+||||||+
T Consensus        16 G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~---------~l~HpnIv~~~~~~~~~~~~~ivmEy~~   86 (271)
T d1nvra_          16 GAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINK---------MLNHENVVKFYGHRREGNIQYLFLEYCS   86 (271)
T ss_dssp             ETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHH---------TCCCTTBCCEEEEEEETTEEEEEEECCT
T ss_pred             CcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHH---------hCCCCCEeeEeeeeccCceeEEEEeccC
Confidence            578999999975 46667888643          345555555         8899999999999999999999999999


Q ss_pred             CCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC-----
Q 044568           73 NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED-----  147 (257)
Q Consensus        73 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~-----  147 (257)
                      +|+|.+++.  ....+++.++..++.|+++||.|||++   +|+||||||+|||++.++.+||+|||+++.....     
T Consensus        87 gg~L~~~l~--~~~~l~e~~~~~i~~qi~~al~ylH~~---~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~~~~~  161 (271)
T d1nvra_          87 GGELFDRIE--PDIGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERL  161 (271)
T ss_dssp             TEEGGGGSB--TTTBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECEETTEECC
T ss_pred             CCcHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHHc---CCccCcccHHHEEECCCCCEEEccchhheeeccCCcccc
Confidence            999999997  566899999999999999999999999   9999999999999999999999999999854321     


Q ss_pred             cccccCCCCccCcccccCCCC-CccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCC
Q 044568          148 FVIDKRDKGYMAPECYKRTPI-SVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVD  226 (257)
Q Consensus       148 ~~~~~~~~~~~aPE~~~~~~~-~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (257)
                      .....||+.|+|||.+.+..+ +.++||||+||++|||++|+.||.........  ...+...          .......
T Consensus       162 ~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~--~~~~~~~----------~~~~~~~  229 (271)
T d1nvra_         162 LNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQE--YSDWKEK----------KTYLNPW  229 (271)
T ss_dssp             BCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSSTTSHH--HHHHHTT----------CTTSTTG
T ss_pred             ccceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCChHHHH--HHHHhcC----------CCCCCcc
Confidence            245578999999999988776 57899999999999999999999765332211  1111000          0000112


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          227 KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       227 ~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ...++.+.+++.+||+.||++|| ++|+++
T Consensus       230 ~~~s~~~~~li~~~L~~dP~~R~t~~eil~  259 (271)
T d1nvra_         230 KKIDSAPLALLHKILVENPSARITIPDIKK  259 (271)
T ss_dssp             GGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             ccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            23456788999999999999999 999975

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-48  Score=320.60  Aligned_cols=228  Identities=21%  Similarity=0.339  Sum_probs=182.9

Q ss_pred             ccccceeeecccCCCCCeeeccc--------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS--------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGS   75 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gs   75 (257)
                      +.|+.||+|.+.++..++||...        |.+|++.+.         +++|+||+++.+.+. .+..++|||||++|+
T Consensus        24 G~fg~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~---------~l~HpnIv~~~g~~~-~~~~~iv~Ey~~~g~   93 (272)
T d1qpca_          24 GQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMK---------QLQHQRLVRLYAVVT-QEPIYIITEYMENGS   93 (272)
T ss_dssp             ETTEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHH---------HCCCTTBCCEEEEEC-SSSCEEEEECCTTCB
T ss_pred             CCCcEEEEEEECCCCEEEEEEEccCcCCHHHHHHHHHHHH---------hCCCCCEeEEEeeec-cCCeEEEEEeCCCCc
Confidence            67899999999888889998764        345555555         889999999999764 466799999999999


Q ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc----ccc
Q 044568           76 LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF----VID  151 (257)
Q Consensus        76 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~----~~~  151 (257)
                      |.+++.......+++.++..++.|++.||.|||++   +|+||||||+|||+++++.+||+|||+++......    ...
T Consensus        94 L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~~---~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~~~~~~~~~~  170 (272)
T d1qpca_          94 LVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGA  170 (272)
T ss_dssp             HHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEECCTTC
T ss_pred             HHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCccchhheeeecccceeeccccceEEccCCcccccccc
Confidence            99998754555799999999999999999999999   99999999999999999999999999998654322    344


Q ss_pred             cCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHH
Q 044568          152 KRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLE  231 (257)
Q Consensus       152 ~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (257)
                      .+|+.|+|||.+....++.++|||||||++|||+||..||.......  .....          +.... ....+...++
T Consensus       171 ~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~~~~--~~~~~----------i~~~~-~~~~p~~~~~  237 (272)
T d1qpca_         171 KFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNP--EVIQN----------LERGY-RMVRPDNCPE  237 (272)
T ss_dssp             CCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--HHHHH----------HHTTC-CCCCCTTCCH
T ss_pred             CCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCCCCCHH--HHHHH----------HHhcC-CCCCcccChH
Confidence            67788999999998889999999999999999999766654331111  11111          11111 1123455667


Q ss_pred             HHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          232 NLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       232 ~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      .+.+++.+||+.||++|| ++||++.|
T Consensus       238 ~l~~li~~cl~~~P~~Rpt~~ei~~~L  264 (272)
T d1qpca_         238 ELYQLMRLCWKERPEDRPTFDYLRSVL  264 (272)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHhHCcCHHHHHHHh
Confidence            899999999999999999 99998764

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-47  Score=318.10  Aligned_cols=226  Identities=18%  Similarity=0.144  Sum_probs=183.9

Q ss_pred             cccccceeeecc-cCCCCCeeeccch---------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            3 CTKLSNFYRSSF-NARNSPWISRVSW---------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         3 ~~~~~~~y~~~~-~~~~~~~i~~~~~---------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      .+.++.||++.. .+++.+++|.+..         .+|++.+.         ++.|+||+++.+.+...+..+||||||+
T Consensus        30 ~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~---------~l~HpnIv~~~~~~~~~~~~~ivmEy~~  100 (293)
T d1yhwa1          30 QGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMR---------ENKNPNIVNYLDSYLVGDELWVVMEYLA  100 (293)
T ss_dssp             CSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHH---------HCCCTTBCCEEEEEEETTEEEEEEECCT
T ss_pred             cCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHH---------hCCCCCEeeEeEEEEECCEEEEEEEecC
Confidence            367999999985 4566788886543         34444444         8899999999999999999999999999


Q ss_pred             CCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC---Ccc
Q 044568           73 NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE---DFV  149 (257)
Q Consensus        73 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~---~~~  149 (257)
                      +|+|.+++.+   ..+++.++..++.|++.||.|||++   ||+||||||+|||++.++.+||+|||+++....   ...
T Consensus       101 gg~L~~~~~~---~~l~~~~~~~i~~qi~~aL~yLH~~---~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~~~~~~  174 (293)
T d1yhwa1         101 GGSLTDVVTE---TCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRS  174 (293)
T ss_dssp             TCBHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCCBC
T ss_pred             CCcHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHHHC---CCcccCCcHHHeEECCCCcEeeccchhheeecccccccc
Confidence            9999998864   4699999999999999999999999   999999999999999999999999999986432   234


Q ss_pred             cccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHH
Q 044568          150 IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKN  229 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (257)
                      ...||+.|+|||.+.+..++.++||||+||++|||++|+.||......   ..+....         .........+...
T Consensus       175 ~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~---~~~~~~~---------~~~~~~~~~~~~~  242 (293)
T d1yhwa1         175 TMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPL---RALYLIA---------TNGTPELQNPEKL  242 (293)
T ss_dssp             CCCSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH---HHHHHHH---------HHCSCCCSSGGGS
T ss_pred             ccccCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCCCHH---HHHHHHH---------hCCCCCCCCcccC
Confidence            557899999999999999999999999999999999999999754211   1111100         0111111334455


Q ss_pred             HHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          230 LENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       230 ~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ++.+.+++.+||+.||++|| ++|+++
T Consensus       243 s~~~~~li~~~L~~dP~~R~s~~eil~  269 (293)
T d1yhwa1         243 SAIFRDFLNRCLDMDVEKRGSAKELLQ  269 (293)
T ss_dssp             CHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             CHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            67899999999999999999 999875

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-47  Score=318.65  Aligned_cols=225  Identities=17%  Similarity=0.248  Sum_probs=178.8

Q ss_pred             ccccceeeecccCCC---CCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEe
Q 044568            4 TKLSNFYRSSFNARN---SPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIER   69 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~---~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E   69 (257)
                      +.|+.||+|.+..+.   .+++|...           +.+|++.+.         +++|+||+++.+++.. +..+||||
T Consensus        18 G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~---------~l~HpnIv~~~g~~~~-~~~~lvmE   87 (277)
T d1xbba_          18 GNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQ---------QLDNPYIVRMIGICEA-ESWMLVME   87 (277)
T ss_dssp             CSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHH---------TCCCTTBCCEEEEEES-SSEEEEEE
T ss_pred             CCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHH---------hCCCCCCceEEEEecc-CCEEEEEE
Confidence            678999999865443   46777643           344555555         8899999999998854 56789999


Q ss_pred             ecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc-
Q 044568           70 PVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF-  148 (257)
Q Consensus        70 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~-  148 (257)
                      ||++|+|.+++.  ....+++.++..++.|++.||.|||++   +|+||||||+|||++.++.+|++|||+++...... 
T Consensus        88 ~~~~g~L~~~l~--~~~~l~~~~~~~i~~qi~~gl~ylH~~---~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~  162 (277)
T d1xbba_          88 MAELGPLNKYLQ--QNRHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADEN  162 (277)
T ss_dssp             CCTTEEHHHHHH--HCTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCS
T ss_pred             cCCCCcHHHHHh--hccCCCHHHHHHHHHHHHHHHhhHHhC---CcccCCCcchhhcccccCcccccchhhhhhcccccc
Confidence            999999999998  456799999999999999999999999   99999999999999999999999999997543322 


Q ss_pred             -----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcC
Q 044568          149 -----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRG  222 (257)
Q Consensus       149 -----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (257)
                           ....+|+.|+|||.+.+..++.++|||||||++|||++ |+.||......    .+...    ....      ..
T Consensus       163 ~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~~~----~~~~~----i~~~------~~  228 (277)
T d1xbba_         163 YYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS----EVTAM----LEKG------ER  228 (277)
T ss_dssp             EEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHH----HHHHH----HHTT------CC
T ss_pred             ccccccccCCCceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCCCHH----HHHHH----HHcC------CC
Confidence                 23467888999999999899999999999999999998 89999754211    11110    0000      11


Q ss_pred             CCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          223 TKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       223 ~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ...+...++.+.+++.+||+.||++|| ++||.+.|
T Consensus       229 ~~~p~~~~~~~~~li~~cl~~dp~~RPs~~~i~~~L  264 (277)
T d1xbba_         229 MGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRL  264 (277)
T ss_dssp             CCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHH
T ss_pred             CCCCcccCHHHHHHHHHHcCCCHhHCcCHHHHHHHh
Confidence            134555678899999999999999999 99997654

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-47  Score=313.73  Aligned_cols=228  Identities=17%  Similarity=0.217  Sum_probs=187.8

Q ss_pred             cccccceeeecccCCCCCeeeccc--------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCC
Q 044568            3 CTKLSNFYRSSFNARNSPWISRVS--------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNG   74 (257)
Q Consensus         3 ~~~~~~~y~~~~~~~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~g   74 (257)
                      .+.|+.||+|+..++..++||...        |.+|++.+.         ++.|+||+++.+++...+..++||||+++|
T Consensus        14 ~G~fg~Vy~~~~~~~~~vAvK~l~~~~~~~~~~~~Ev~~~~---------~l~HpnIv~~~g~~~~~~~~~iv~Ey~~~g   84 (258)
T d1k2pa_          14 TGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMM---------NLSHEKLVQLYGVCTKQRPIFIITEYMANG   84 (258)
T ss_dssp             EETTEEEEEEEETTTEEEEEEEEESSSSCHHHHHHHHHHHH---------TCCCTTBCCEEEEECCSSSEEEEEECCTTE
T ss_pred             cCCCeEEEEEEECCCCEEEEEEECcCcCCHHHHHHHHHHHH---------hcCCCceeeEEEEEeeCCceEEEEEccCCC
Confidence            367999999999877788888643        345666555         889999999999999999999999999999


Q ss_pred             CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc----cc
Q 044568           75 SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF----VI  150 (257)
Q Consensus        75 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~----~~  150 (257)
                      +|.+++.. ....+++..+..++.|+++||.|||++   +|+||||||+||+++.++.+||+|||+++......    ..
T Consensus        85 ~l~~~~~~-~~~~~~~~~~~~i~~qi~~gl~~LH~~---~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~  160 (258)
T d1k2pa_          85 CLLNYLRE-MRHRFQTQQLLEMCKDVCEAMEYLESK---QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVG  160 (258)
T ss_dssp             EHHHHHHS-GGGCCCHHHHHHHHHHHHHHHHHHHHT---TBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSSCCCCCC
T ss_pred             cHHHhhhc-cccCCcHHHHHHHHHHHHHHHHHHhhc---CcccccccceeEEEcCCCcEEECcchhheeccCCCceeecc
Confidence            99999875 566789999999999999999999999   99999999999999999999999999987543322    33


Q ss_pred             ccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHH
Q 044568          151 DKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKN  229 (257)
Q Consensus       151 ~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (257)
                      ..+|+.|+|||.+....++.++||||||+++|||+| |+.||......  + ....          +... .....+...
T Consensus       161 ~~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~~--~-~~~~----------i~~~-~~~~~p~~~  226 (258)
T d1k2pa_         161 SKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNS--E-TAEH----------IAQG-LRLYRPHLA  226 (258)
T ss_dssp             SCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCHH--H-HHHH----------HHTT-CCCCCCTTC
T ss_pred             cCCCCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCCCHH--H-HHHH----------HHhC-CCCCCcccc
Confidence            467788999999999999999999999999999998 89999755211  1 1110          1110 111334556


Q ss_pred             HHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          230 LENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       230 ~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ++.+.+++.+||+.||++|| ++||++.|
T Consensus       227 ~~~l~~li~~cl~~dP~~RPt~~eil~~L  255 (258)
T d1k2pa_         227 SEKVYTIMYSCWHEKADERPTFKILLSNI  255 (258)
T ss_dssp             CHHHHHHHHHTTCSSGGGSCCHHHHHHHH
T ss_pred             cHHHHHHHHHHccCCHhHCcCHHHHHHHh
Confidence            67899999999999999999 99998754

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-47  Score=317.02  Aligned_cols=228  Identities=17%  Similarity=0.153  Sum_probs=183.1

Q ss_pred             cccccceeeeccc-CCCCCeeeccc---------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            3 CTKLSNFYRSSFN-ARNSPWISRVS---------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         3 ~~~~~~~y~~~~~-~~~~~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      .+.++.||++... ++..+++|.+.         +.+|++.+.         ++.|+||+++.+.+...+..+||||||+
T Consensus        22 ~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~---------~l~HpnIv~l~~~~~~~~~~~lvmEy~~   92 (288)
T d2jfla1          22 DGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILA---------SCDHPNIVKLLDAFYYENNLWILIEFCA   92 (288)
T ss_dssp             EETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHH---------HCCCTTBCCEEEEEEETTEEEEEEECCT
T ss_pred             eCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHH---------hCCCCCCCeEEEEEeeCCeEEEEEecCC
Confidence            3678999999965 45567777643         345666655         7889999999999999999999999999


Q ss_pred             CCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---cc
Q 044568           73 NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---FV  149 (257)
Q Consensus        73 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~~  149 (257)
                      +|+|.+++.+ ....+++.++..++.|++.||.|||++   +|+||||||+|||++.++.+||+|||++......   ..
T Consensus        93 ~g~L~~~~~~-~~~~l~e~~~~~i~~qi~~gL~ylH~~---~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~~~~~~  168 (288)
T d2jfla1          93 GGAVDAVMLE-LERPLTESQIQVVCKQTLDALNYLHDN---KIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRD  168 (288)
T ss_dssp             TEEHHHHHHH-HTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECHHHHHHHT
T ss_pred             CCcHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CEEEeecChhheeECCCCCEEEEechhhhccCCCccccc
Confidence            9999999875 456799999999999999999999999   9999999999999999999999999998754322   23


Q ss_pred             cccCCCCccCccccc-----CCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCC
Q 044568          150 IDKRDKGYMAPECYK-----RTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTK  224 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~-----~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (257)
                      ...||+.|+|||++.     ...|+.++|||||||++|||++|+.||.......   .+....         ..-.+...
T Consensus       169 ~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~~~~~---~~~~i~---------~~~~~~~~  236 (288)
T d2jfla1         169 SFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMR---VLLKIA---------KSEPPTLA  236 (288)
T ss_dssp             CCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTSCGGG---HHHHHH---------HSCCCCCS
T ss_pred             ccccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCCCHHH---HHHHHH---------cCCCCCCC
Confidence            567899999999984     4458899999999999999999999997552221   111110         00011112


Q ss_pred             CCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          225 VDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       225 ~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .+...++.+.+|+.+||+.||++|| ++|+++
T Consensus       237 ~~~~~s~~~~~li~~~L~~dp~~R~t~~ell~  268 (288)
T d2jfla1         237 QPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQ  268 (288)
T ss_dssp             SGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             ccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            3445567899999999999999999 999975

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-46  Score=311.18  Aligned_cols=225  Identities=17%  Similarity=0.220  Sum_probs=176.4

Q ss_pred             ccccceeeecccC-CCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeee----cCceeEE
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL----TSVSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~----~~~~~lV   67 (257)
                      +.|+.||++.... +..+++|.+.           +.+|++.+.         ++.|+||+++.+.+..    ....+||
T Consensus        20 G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~---------~l~HpnIv~~~~~~~~~~~~~~~~~iv   90 (270)
T d1t4ha_          20 GSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLK---------GLQHPNIVRFYDSWESTVKGKKCIVLV   90 (270)
T ss_dssp             CSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHT---------TCCCTTBCCEEEEEEEESSSCEEEEEE
T ss_pred             CcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHH---------hCCCCCeeeEEEEEeeccccCCEEEEE
Confidence            5789999999764 4566777643           234444444         8899999999998865    3467999


Q ss_pred             EeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCC--eeeccCCCCceeeC-CCCceEEeeecccccC
Q 044568           68 ERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPP--ILHCDIKPQNILMD-EFWTAKILDFGLAKLP  144 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~--i~h~dl~~~nil~~-~~~~~kl~dfg~~~~~  144 (257)
                      ||||++|+|.+++.  ....+++.++..++.|++.||.|||++   +  |+||||||+|||++ .++.+||+|||+++..
T Consensus        91 mE~~~~g~L~~~l~--~~~~~~~~~~~~~~~qi~~gl~yLH~~---~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~  165 (270)
T d1t4ha_          91 TELMTSGTLKTYLK--RFKVMKIKVLRSWCRQILKGLQFLHTR---TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLK  165 (270)
T ss_dssp             EECCCSCBHHHHHH--HHSSCCHHHHHHHHHHHHHHHHHHHTS---SSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGC
T ss_pred             EeCCCCCcHHHHHh--ccccccHHHHHHHHHHHHHHHHHHHHC---CCCEEeCCcChhhceeeCCCCCEEEeecCcceec
Confidence            99999999999997  446799999999999999999999999   7  99999999999996 4789999999999864


Q ss_pred             CCC-cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC
Q 044568          145 NED-FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT  223 (257)
Q Consensus       145 ~~~-~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (257)
                      ... .....||+.|+|||.+.+ .++.++|||||||++|||++|+.||.......   .+..         .+.....+.
T Consensus       166 ~~~~~~~~~GT~~Y~aPE~~~~-~~~~~~DIwSlGvilyel~~g~~Pf~~~~~~~---~~~~---------~i~~~~~~~  232 (270)
T d1t4ha_         166 RASFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAA---QIYR---------RVTSGVKPA  232 (270)
T ss_dssp             CTTSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHH---HHHH---------HHTTTCCCG
T ss_pred             cCCccCCcccCccccCHHHhCC-CCCCcCchhhHHHHHHHHHHCCCCCCCcccHH---HHHH---------HHHcCCCCc
Confidence            433 355689999999998865 59999999999999999999999997442111   1110         011111111


Q ss_pred             CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          224 KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       224 ~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ..+....+.+.+++.+||+.||++|| ++|+++
T Consensus       233 ~~~~~~~~~~~~li~~~l~~dp~~R~s~~ell~  265 (270)
T d1t4ha_         233 SFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN  265 (270)
T ss_dssp             GGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             ccCccCCHHHHHHHHHHccCCHhHCcCHHHHhC
Confidence            22333456789999999999999999 999986

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-47  Score=322.62  Aligned_cols=229  Identities=17%  Similarity=0.186  Sum_probs=181.0

Q ss_pred             ccccceeeecccCCCC------Ceeeccc----------hhhhHHHHhHhhhccccccc-cCCceeeeceeeeecCceeE
Q 044568            4 TKLSNFYRSSFNARNS------PWISRVS----------WTADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVSGK   66 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~------~~i~~~~----------~~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~~l   66 (257)
                      +.|+.||+|+......      +++|...          +.+|++.+.         ++ .|+|||++.+.+...+..+|
T Consensus        48 G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~---------~l~~HpnIv~l~~~~~~~~~~~l  118 (325)
T d1rjba_          48 GAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMT---------QLGSHENIVNLLGACTLSGPIYL  118 (325)
T ss_dssp             CSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHH---------HHCCCTTBCCEEEEECSSSSCEE
T ss_pred             CCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHH---------HhcCCCcEeEEEEEEeeCCeEEE
Confidence            6799999999765443      5565532          234444444         55 79999999999999999999


Q ss_pred             EEeecCCCCHHHHHhccC---------------------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCce
Q 044568           67 IERPVRNGSLTDIIFCSA---------------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNI  125 (257)
Q Consensus        67 V~E~~~~gsL~~~l~~~~---------------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~ni  125 (257)
                      |||||++|+|.++|....                     ...+++.+++.++.|++.||.|||++   +|+||||||+||
T Consensus       119 v~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~---~IiHRDlKp~Ni  195 (325)
T d1rjba_         119 IFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK---SCVHRDLAARNV  195 (325)
T ss_dssp             EEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT---TEEETTCSGGGE
T ss_pred             EEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCchhcc
Confidence            999999999999997532                     13589999999999999999999999   999999999999


Q ss_pred             eeCCCCceEEeeecccccCCCCc-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChh
Q 044568          126 LMDEFWTAKILDFGLAKLPNEDF-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPE  199 (257)
Q Consensus       126 l~~~~~~~kl~dfg~~~~~~~~~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~  199 (257)
                      +++.++.+||+|||+++......     ....+|+.|+|||.+.+..++.++|||||||++|||+| |..||.+......
T Consensus       196 ll~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~~~~~~  275 (325)
T d1rjba_         196 LVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDAN  275 (325)
T ss_dssp             EEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHH
T ss_pred             ccccCCeEEEeeccccccccCCCceeeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCCCCCCCCCHHHH
Confidence            99999999999999987533222     23456889999999999999999999999999999998 8999976533221


Q ss_pred             hHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          200 EIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                         +.....         .-. ....+...++.+.+|+.+||+.||++|| ++||++.|
T Consensus       276 ---~~~~~~---------~~~-~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L  321 (325)
T d1rjba_         276 ---FYKLIQ---------NGF-KMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFL  321 (325)
T ss_dssp             ---HHHHHH---------TTC-CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             ---HHHHHh---------cCC-CCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence               111110         000 1133455667899999999999999999 99999875

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-46  Score=314.54  Aligned_cols=228  Identities=19%  Similarity=0.273  Sum_probs=177.3

Q ss_pred             ccccceeeecccCCC-----CCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEE
Q 044568            4 TKLSNFYRSSFNARN-----SPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIE   68 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~-----~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~   68 (257)
                      +.|+.||+|++..+.     .++||...          |.+|++.+.         +++|+||+++.+++...+..++||
T Consensus        18 G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~---------~l~H~nIv~~~g~~~~~~~~~~v~   88 (283)
T d1mqba_          18 GEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMG---------QFSHHNIIRLEGVISKYKPMMIIT   88 (283)
T ss_dssp             CSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHH---------TCCCTTBCCEEEEECSSSSEEEEE
T ss_pred             CCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHH---------hcCCCCEeeeeEEEecCCceEEEE
Confidence            578999999987654     35777643          334444444         889999999999999999999999


Q ss_pred             eecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc
Q 044568           69 RPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF  148 (257)
Q Consensus        69 E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~  148 (257)
                      |||.+|++.+.+.. ....+++.++..++.|++.||.|||++   +|+||||||+|||++.++.+||+|||+++......
T Consensus        89 e~~~~~~l~~~~~~-~~~~~~~~~~~~i~~~i~~gl~~lH~~---~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~  164 (283)
T d1mqba_          89 EYMENGALDKFLRE-KDGEFSVLQLVGMLRGIAAGMKYLANM---NYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDP  164 (283)
T ss_dssp             ECCTTEEHHHHHHH-TTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCCCC--------
T ss_pred             EecccCcchhhhhc-ccccccHHHHHHHHHHHHHhhhhcccc---ccccCccccceEEECCCCeEEEcccchhhcccCCC
Confidence            99999999998876 667899999999999999999999999   99999999999999999999999999997643221


Q ss_pred             ------ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcC
Q 044568          149 ------VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRG  222 (257)
Q Consensus       149 ------~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (257)
                            ....+|+.|+|||.+.+..++.++|||||||++|||++|..||....... . .. ..         +.... .
T Consensus       165 ~~~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~~~~~-~-~~-~~---------i~~~~-~  231 (283)
T d1mqba_         165 EATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNH-E-VM-KA---------INDGF-R  231 (283)
T ss_dssp             ---------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH-H-HH-HH---------HHTTC-C
T ss_pred             ccceEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccccCCHH-H-HH-HH---------HhccC-C
Confidence                  23456888999999999999999999999999999999777665432111 1 11 10         01111 1


Q ss_pred             CCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          223 TKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       223 ~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ...+...+..+.+++.+||+.||++|| ++||++.|
T Consensus       232 ~~~~~~~~~~l~~li~~cl~~~p~~RPt~~eil~~L  267 (283)
T d1mqba_         232 LPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSIL  267 (283)
T ss_dssp             CCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHH
T ss_pred             CCCchhhHHHHHHHHHHHCcCCHhHCcCHHHHHHHH
Confidence            134455678899999999999999999 99998764

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-47  Score=313.62  Aligned_cols=238  Identities=15%  Similarity=0.144  Sum_probs=170.4

Q ss_pred             ccccceeeeccc-CCCCCeeeccchh--hhHHHHhHhhhccccccccCCceeeeceeeee--cCceeEEEeecCCCCHHH
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSWT--ADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL--TSVSGKIERPVRNGSLTD   78 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~--~~~~~lV~E~~~~gsL~~   78 (257)
                      +.|+.||+++.. +++.+++|.+...  .+.+.-.+...-..+.++.|+||+++.+.+.+  .+..+||||||++|+|.+
T Consensus        15 G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~ivmEy~~~g~L~~   94 (269)
T d2java1          15 GSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLAS   94 (269)
T ss_dssp             CSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEEEEECCTTEEHHH
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEEEEecCCCCcHHH
Confidence            568999999865 5666888875421  11111111111113348899999999998864  456899999999999999


Q ss_pred             HHhcc--CCCCCCHHHHHHHHHHHHHHHHHHhhCC--CCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---cccc
Q 044568           79 IIFCS--AERNPYWNQRVRIALDVAKGILYLHDEC--EPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---FVID  151 (257)
Q Consensus        79 ~l~~~--~~~~l~~~~~~~~~~~i~~~l~~lh~~~--~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~~~~  151 (257)
                      ++...  ....+++.++..++.|++.||.|||+++  ..+|+||||||+|||++.++.+||+|||+++.....   ....
T Consensus        95 ~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~~~~~  174 (269)
T d2java1          95 VITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKAF  174 (269)
T ss_dssp             HHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHHHHC----------
T ss_pred             HHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeeccceeecccCCCccccC
Confidence            99642  3567999999999999999999999971  013999999999999999999999999999865432   2456


Q ss_pred             cCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHH
Q 044568          152 KRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLE  231 (257)
Q Consensus       152 ~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (257)
                      .||+.|+|||.+.+..++.++|||||||++|||++|+.||.....   ......     .....      ....+...++
T Consensus       175 ~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~~~---~~~~~~-----i~~~~------~~~~~~~~s~  240 (269)
T d2java1         175 VGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQ---KELAGK-----IREGK------FRRIPYRYSD  240 (269)
T ss_dssp             -CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH---HHHHHH-----HHHTC------CCCCCTTSCH
T ss_pred             CCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCCCH---HHHHHH-----HHcCC------CCCCCcccCH
Confidence            789999999999999999999999999999999999999975421   111111     01111      1123445567


Q ss_pred             HHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          232 NLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       232 ~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .+.+++.+||+.||++|| ++|+++
T Consensus       241 ~l~~li~~~L~~dp~~Rps~~ell~  265 (269)
T d2java1         241 ELNEIITRMLNLKDYHRPSVEEILE  265 (269)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             HHHHHHHHHcCCChhHCcCHHHHHh
Confidence            899999999999999999 999985

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-46  Score=314.74  Aligned_cols=221  Identities=17%  Similarity=0.163  Sum_probs=180.8

Q ss_pred             ccccceeeeccc-CCCCCeeeccc------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||+++.. +++.+++|.+.            +.+|++.+.         ++.|+||+++.+.+...+..+|||||
T Consensus        19 G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~---------~l~HpnIv~l~~~~~~~~~~~ivmEy   89 (288)
T d1uu3a_          19 GSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMS---------RLDHPFFVKLYFTFQDDEKLYFGLSY   89 (288)
T ss_dssp             CSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHH---------HCCSTTBCCEEEEEECSSEEEEEECC
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHH---------HcCCCCeeEEEEEEEECCEEEEEEEc
Confidence            679999999964 56678888654            234444444         88999999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---  147 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---  147 (257)
                      |++|+|.+++.  ..+.+++.++..++.|++.||.|||++   +|+||||||+||+++.++.+||+|||+++.....   
T Consensus        90 ~~gg~L~~~~~--~~~~l~e~~~~~~~~qi~~al~ylH~~---~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~  164 (288)
T d1uu3a_          90 AKNGELLKYIR--KIGSFDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQ  164 (288)
T ss_dssp             CTTEEHHHHHH--HHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECC-----
T ss_pred             cCCCCHHHhhh--ccCCCCHHHHHHHHHHHHHHHHhhccc---cEEcCcCCccccccCCCceEEecccccceecccCCcc
Confidence            99999999987  456799999999999999999999999   9999999999999999999999999999865422   


Q ss_pred             --cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcC-CC
Q 044568          148 --FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRG-TK  224 (257)
Q Consensus       148 --~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  224 (257)
                        .....||+.|+|||++.+..++.++||||+||++|||++|..||....   ......             ..... ..
T Consensus       165 ~~~~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~---~~~~~~-------------~i~~~~~~  228 (288)
T d1uu3a_         165 ARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGN---EYLIFQ-------------KIIKLEYD  228 (288)
T ss_dssp             -----CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCSS---HHHHHH-------------HHHTTCCC
T ss_pred             cccccccCCccccCceeeccCCCCcccceehhhHHHHHHhhCCCCCCCcC---HHHHHH-------------HHHcCCCC
Confidence              234578999999999999999999999999999999999999997542   111111             11111 13


Q ss_pred             CCHHHHHHHHHHHHHcccCCCCCCC-hHHHH
Q 044568          225 VDKKNLENLVKVGLWCVQDEPALRP-MKCAV  254 (257)
Q Consensus       225 ~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~  254 (257)
                      ++....+.+.+|+.+||+.||++|| ++|++
T Consensus       229 ~p~~~s~~~~~li~~~L~~dP~~R~t~~e~~  259 (288)
T d1uu3a_         229 FPEKFFPKARDLVEKLLVLDATKRLGCEEME  259 (288)
T ss_dssp             CCTTCCHHHHHHHHTTSCSSGGGSTTSGGGT
T ss_pred             CCccCCHHHHHHHHHHccCCHhHCcCHHHHc
Confidence            3445567789999999999999999 99863

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-47  Score=312.93  Aligned_cols=227  Identities=21%  Similarity=0.245  Sum_probs=177.0

Q ss_pred             ccccceeeecccCCCCCeeeccc-------hhhhHHHHhHhhhccccccccCCceeeeceeeee-cCceeEEEeecCCCC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS-------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL-TSVSGKIERPVRNGS   75 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~-------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~-~~~~~lV~E~~~~gs   75 (257)
                      +.++.||+|++. +..+++|...       +.+|++.+.         +++|+||+++.+++.. .+..++||||+++|+
T Consensus        18 G~fg~Vy~~~~~-~~~vAvK~i~~~~~~~~~~~E~~~l~---------~l~HpnIv~~~g~~~~~~~~~~lv~ey~~~g~   87 (262)
T d1byga_          18 GEFGDVMLGDYR-GNKVAVKCIKNDATAQAFLAEASVMT---------QLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGS   87 (262)
T ss_dssp             CSSCEEEEEEET-TEEEEEEECCCCC--HHHHHTHHHHT---------TCCCTTBCCEEEEECCC--CCEEEECCCTTEE
T ss_pred             CCCeEEEEEEEC-CeEEEEEEECcHHHHHHHHHHHHHHH---------hCCCCCEeeEEEEEEecCCcEEEEEeccCCCC
Confidence            678999999984 6678888764       455666555         8899999999998854 566899999999999


Q ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcccccCCC
Q 044568           76 LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVIDKRDK  155 (257)
Q Consensus        76 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~  155 (257)
                      |.+++.......+++..++.++.|++.||.|||++   +++||||+|+||+++.++.+|++|||+++..........++.
T Consensus        88 L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~~---~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~~~~~~~~~  164 (262)
T d1byga_          88 LVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPV  164 (262)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECCCCC------------CCT
T ss_pred             HHHHHHhcCCCCCCHHHHHHHHHHHHhhccccccC---ceeccccchHhheecCCCCEeecccccceecCCCCccccccc
Confidence            99999754445689999999999999999999999   999999999999999999999999999987666666677888


Q ss_pred             CccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHH
Q 044568          156 GYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLV  234 (257)
Q Consensus       156 ~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  234 (257)
                      .|+|||.+.+..++.++||||||+++|||+| |+.||.......    +...         +..-. ..+.+...++++.
T Consensus       165 ~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~~~~----~~~~---------i~~~~-~~~~~~~~~~~~~  230 (262)
T d1byga_         165 KWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD----VVPR---------VEKGY-KMDAPDGCPPAVY  230 (262)
T ss_dssp             TTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGG----HHHH---------HTTTC-CCCCCTTCCHHHH
T ss_pred             cCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCCHHH----HHHH---------HHcCC-CCCCCccCCHHHH
Confidence            9999999998999999999999999999998 688776542111    1110         00101 1134555668899


Q ss_pred             HHHHHcccCCCCCCC-hHHHHHhC
Q 044568          235 KVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       235 ~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      +++.+||+.||.+|| +.|+++.|
T Consensus       231 ~li~~cl~~dP~~Rps~~~l~~~L  254 (262)
T d1byga_         231 EVMKNCWHLDAAMRPSFLQLREQL  254 (262)
T ss_dssp             HHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             HHHHHHcccCHhHCcCHHHHHHHH
Confidence            999999999999999 99998865

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6.6e-46  Score=313.15  Aligned_cols=228  Identities=20%  Similarity=0.231  Sum_probs=173.7

Q ss_pred             cccccceeeeccc-CCCCCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            3 CTKLSNFYRSSFN-ARNSPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         3 ~~~~~~~y~~~~~-~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      .+.|+.||+++.. +++.+++|.+.          +.+|++.+.         ++.|+||+++.+.+...+..+||||||
T Consensus        19 ~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~---------~l~HpnIv~l~~~~~~~~~~~lvmE~~   89 (307)
T d1a06a_          19 TGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLH---------KIKHPNIVALDDIYESGGHLYLIMQLV   89 (307)
T ss_dssp             SGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHH---------TCCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred             eccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHH---------hCCCCCCCcEEEEEEECCEEEEEEecc
Confidence            4689999999965 45667888643          345666555         889999999999999999999999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeC---CCCceEEeeecccccCCCC-
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD---EFWTAKILDFGLAKLPNED-  147 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~---~~~~~kl~dfg~~~~~~~~-  147 (257)
                      +||+|.+++.  ....+++.++..++.|++.||.|||++   +|+||||||+||++.   +++.+||+|||+++..... 
T Consensus        90 ~gg~L~~~l~--~~~~l~e~~~~~~~~qi~~al~ylH~~---~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~~~  164 (307)
T d1a06a_          90 SGGELFDRIV--EKGFYTERDASRLIFQVLDAVKYLHDL---GIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGS  164 (307)
T ss_dssp             CSCBHHHHHH--TCSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSTTCCEEECCC----------
T ss_pred             CCCcHHHhhh--cccCCCHHHHHHHHHHHHHHHHhhhhc---eeeeEEecccceeecccCCCceEEEeccceeEEccCCC
Confidence            9999999997  567899999999999999999999999   999999999999995   5789999999999765332 


Q ss_pred             -cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCC
Q 044568          148 -FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVD  226 (257)
Q Consensus       148 -~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (257)
                       .....||+.|+|||.+.+..++.++||||+||++|||++|+.||......   .......     ..   ....+....
T Consensus       165 ~~~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~---~~~~~i~-----~~---~~~~~~~~~  233 (307)
T d1a06a_         165 VLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDA---KLFEQIL-----KA---EYEFDSPYW  233 (307)
T ss_dssp             --------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH---HHHHHHH-----TT---CCCCCTTTT
T ss_pred             eeeeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCCCHH---HHHHHHh-----cc---CCCCCCccc
Confidence             34567999999999999999999999999999999999999999754211   1111100     00   000111223


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          227 KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       227 ~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ...++.+.+++.+||+.||.+|| ++|+++
T Consensus       234 ~~~s~~~~~li~~~L~~dP~~R~s~~eil~  263 (307)
T d1a06a_         234 DDISDSAKDFIRHLMEKDPEKRFTCEQALQ  263 (307)
T ss_dssp             TTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             cCCCHHHHHHHHHHccCCHhHCcCHHHHhc
Confidence            44567899999999999999999 999986

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-46  Score=317.73  Aligned_cols=238  Identities=19%  Similarity=0.203  Sum_probs=179.5

Q ss_pred             ccccceeeeccc-CCCCCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +.|+.||++... ++..+++|.+.          +.+|++.+         .++.|+||+++.+.+...+..+||||||+
T Consensus        17 G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il---------~~l~HpnIv~l~~~~~~~~~~~iVmEy~~   87 (322)
T d1s9ja_          17 GNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVL---------HECNSPYIVGFYGAFYSDGEISICMEHMD   87 (322)
T ss_dssp             CSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGG---------GGCCCTTBCCEEEEEECSSEEEEEEECCT
T ss_pred             CCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHH---------HhCCCCCCCcEEEEEEECCEEEEEEEcCC
Confidence            679999999965 45667787653          22333333         38899999999999999999999999999


Q ss_pred             CCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhh-CCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC-Cccc
Q 044568           73 NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHD-ECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE-DFVI  150 (257)
Q Consensus        73 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~-~~~~  150 (257)
                      +|+|.+++.+  ...+++.++..++.|++.||.|||+ +   +|+||||||+|||++.++.+||+|||++..... ....
T Consensus        88 gg~L~~~l~~--~~~l~~~~~~~~~~qil~aL~yLH~~~---~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~~~~  162 (322)
T d1s9ja_          88 GGSLDQVLKK--AGRIPEQILGKVSIAVIKGLTYLREKH---KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANS  162 (322)
T ss_dssp             TEEHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHHH---CCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHTC--
T ss_pred             CCcHHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHHHhC---CEEccccCHHHeeECCCCCEEEeeCCCccccCCCcccc
Confidence            9999999973  4579999999999999999999996 6   899999999999999999999999999875322 2345


Q ss_pred             ccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHh--------------------
Q 044568          151 DKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKC--------------------  210 (257)
Q Consensus       151 ~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~--------------------  210 (257)
                      ..||+.|+|||++.+..|+.++||||+||++|||++|+.||...................                    
T Consensus       163 ~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (322)
T d1s9ja_         163 FVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGM  242 (322)
T ss_dssp             -CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCCCTTHHHHHC---------------------------
T ss_pred             ccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhcCCcccCCccccccccccccccc
Confidence            689999999999999999999999999999999999999997653322111000000000                    


Q ss_pred             -----h-hhhhhhhhhc---CCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          211 -----F-INRELNKLVR---GTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       211 -----~-~~~~~~~~~~---~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                           . ..........   +..........+.+++.+||+.||++|| ++|+++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~L~  297 (322)
T d1s9ja_         243 DSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMV  297 (322)
T ss_dssp             ---CCCCHHHHHHHHHTSCCCCCCBTTBCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             ccccchhHHHHHhhhhccCCccCccccCCHHHHHHHHHHcCCChhHCcCHHHHhh
Confidence                 0 0000000000   0011112346789999999999999999 999975

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-46  Score=312.88  Aligned_cols=228  Identities=21%  Similarity=0.291  Sum_probs=180.8

Q ss_pred             ccccceeeecccCCCCCeeeccc--------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS--------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGS   75 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gs   75 (257)
                      +.|+.||+|.+.++..++||.+.        |.+|++.+.         +++|+||+++.+.+. .+..++|||||++|+
T Consensus        28 G~fg~Vy~~~~~~~~~vAiK~l~~~~~~~~~~~~E~~~l~---------~l~h~nIv~~~g~~~-~~~~~lv~Ey~~~g~   97 (285)
T d1fmka3          28 GCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMK---------KLRHEKLVQLYAVVS-EEPIYIVTEYMSKGS   97 (285)
T ss_dssp             CSSCEEEEEEETTTEEEEEEECCTTSSCHHHHHHHHHHHH---------HCCCTTBCCEEEEEC-SSSCEEEECCCTTCB
T ss_pred             CCCeEEEEEEECCCCEEEEEEECcccCCHHHHHHHHHHHH---------hcccCCEeEEEEEEe-cCCeEEEEEecCCCc
Confidence            67899999999988889998754        455555555         889999999999885 456789999999999


Q ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc----ccc
Q 044568           76 LTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF----VID  151 (257)
Q Consensus        76 L~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~----~~~  151 (257)
                      |..++.......+++.+++.++.|++.||.|||++   +++||||||+|||++.++.+||+|||+++......    ...
T Consensus        98 l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~~---~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~  174 (285)
T d1fmka3          98 LLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGA  174 (285)
T ss_dssp             HHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCTTC-------------
T ss_pred             hhhhhhhcccccchHHHHHHHHHHHHHHHHHHhhh---heecccccceEEEECCCCcEEEcccchhhhccCCCceeeccc
Confidence            99999764556799999999999999999999999   99999999999999999999999999987543222    335


Q ss_pred             cCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHH
Q 044568          152 KRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLE  231 (257)
Q Consensus       152 ~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (257)
                      .+|+.|+|||.+....++.++||||||+++|||++|..||........  .+..+          .... ..+.+...++
T Consensus       175 ~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~~~~~--~~~~i----------~~~~-~~~~~~~~~~  241 (285)
T d1fmka3         175 KFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNRE--VLDQV----------ERGY-RMPCPPECPE  241 (285)
T ss_dssp             -CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH--HHHHH----------HTTC-CCCCCTTSCH
T ss_pred             cccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCCCCCHHH--HHHHH----------HhcC-CCCCCcccCH
Confidence            678889999999999999999999999999999997766654321111  11100          0001 1134556678


Q ss_pred             HHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          232 NLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       232 ~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      .+.+++.+||+.||++|| +++|+++|
T Consensus       242 ~l~~li~~cl~~dP~~Rps~~~i~~~L  268 (285)
T d1fmka3         242 SLHDLMCQCWRKEPEERPTFEYLQAFL  268 (285)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             HHHHHHHHHcccCHhHCcCHHHHHHHH
Confidence            899999999999999999 99998754

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=8.9e-46  Score=312.55  Aligned_cols=224  Identities=17%  Similarity=0.119  Sum_probs=180.0

Q ss_pred             ccccceeeeccc-CCCCCeeeccc------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.|+.||+++.. ++..+|+|.+.            +.+|++.+.         ++.|+||+++.+.+...+..+|||||
T Consensus        26 G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~---------~l~HpnIv~~~~~~~~~~~~~iv~E~   96 (309)
T d1u5ra_          26 GSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQ---------KLRHPNTIQYRGCYLREHTAWLVMEY   96 (309)
T ss_dssp             CSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHT---------TCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             CCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHH---------HCCCCCEeeEEEEEEECCEEEEEEEe
Confidence            678999999865 45567888653            234444444         88999999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCccc
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVI  150 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~~  150 (257)
                      |.+|+|..++.  ....+++.++..++.|++.||.|||++   +|+||||||+|||++.++.+||+|||++..... ...
T Consensus        97 ~~~g~l~~~~~--~~~~l~e~~~~~i~~qi~~aL~yLH~~---~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~-~~~  170 (309)
T d1u5ra_          97 CLGSASDLLEV--HKKPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP-ANS  170 (309)
T ss_dssp             CSEEHHHHHHH--HTSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTEEEECCCTTCBSSSS-BCC
T ss_pred             cCCCchHHHHH--hCCCCCHHHHHHHHHHHHHHHHHHHhC---CEeccCCCcceEEECCCCCEEEeecccccccCC-CCc
Confidence            99999987776  456799999999999999999999999   999999999999999999999999999986543 355


Q ss_pred             ccCCCCccCcccccC---CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCH
Q 044568          151 DKRDKGYMAPECYKR---TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDK  227 (257)
Q Consensus       151 ~~~~~~~~aPE~~~~---~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (257)
                      ..||+.|+|||++.+   ..|+.++|||||||++|||++|..||......   ..+...          .....+...+.
T Consensus       171 ~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~~~~---~~~~~i----------~~~~~~~~~~~  237 (309)
T d1u5ra_         171 FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAM---SALYHI----------AQNESPALQSG  237 (309)
T ss_dssp             CCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH---HHHHHH----------HHSCCCCCSCT
T ss_pred             cccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCCCHH---HHHHHH----------HhCCCCCCCCC
Confidence            689999999999864   45899999999999999999999999754211   111000          00011112233


Q ss_pred             HHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          228 KNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       228 ~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ..++.+.+++.+||+.||.+|| ++|+++
T Consensus       238 ~~s~~~~~li~~~L~~dP~~Rpt~~ell~  266 (309)
T d1u5ra_         238 HWSEYFRNFVDSCLQKIPQDRPTSEVLLK  266 (309)
T ss_dssp             TSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             CCCHHHHHHHHHHCcCChhHCcCHHHHHh
Confidence            4567899999999999999999 999875

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-44  Score=306.63  Aligned_cols=222  Identities=17%  Similarity=0.139  Sum_probs=184.8

Q ss_pred             ccccceeeeccc-CCCCCeeeccc------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.++.||+++.. ++..+++|.+.            +.+|++.+.         +++|+||+++.+.+...+..++||||
T Consensus        15 G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~---------~l~HpnIv~~~~~~~~~~~~~ivmE~   85 (316)
T d1fota_          15 GSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLS---------IVTHPFIIRMWGTFQDAQQIFMIMDY   85 (316)
T ss_dssp             CSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHH---------SCCBTTBCCEEEEEECSSEEEEEECC
T ss_pred             CcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHH---------hccCcChhheeeeEeeCCeeeeEeee
Confidence            578999999964 46677888754            223444444         88999999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCccc
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFVI  150 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~~  150 (257)
                      |+||+|.+++.  ....+++..+..++.|++.||.|||++   +|+||||||+|||++.++.+||+|||+++........
T Consensus        86 ~~gg~l~~~~~--~~~~~~~~~~~~~~~qi~~al~~lH~~---~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~~~~~  160 (316)
T d1fota_          86 IEGGELFSLLR--KSQRFPNPVAKFYAAEVCLALEYLHSK---DIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYT  160 (316)
T ss_dssp             CCSCBHHHHHH--HTSSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTSCEEECCCSSCEECSSCBCC
T ss_pred             cCCcccccccc--ccccccccHHHHHHHHHHHhhhhhccC---cEEccccCchheeEcCCCCEEEecCccceEecccccc
Confidence            99999999998  566789999999999999999999999   9999999999999999999999999999987777777


Q ss_pred             ccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc-CCCCCHHH
Q 044568          151 DKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR-GTKVDKKN  229 (257)
Q Consensus       151 ~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  229 (257)
                      ..||+.|+|||.+.+..++.++||||+||++|||++|+.||......   ....             .... ....+...
T Consensus       161 ~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~---~~~~-------------~i~~~~~~~p~~~  224 (316)
T d1fota_         161 LCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTM---KTYE-------------KILNAELRFPPFF  224 (316)
T ss_dssp             CCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHH---HHHH-------------HHHHCCCCCCTTS
T ss_pred             ccCcccccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCCCcCHH---HHHH-------------HHHcCCCCCCCCC
Confidence            89999999999999999999999999999999999999999754211   1111             1111 11334445


Q ss_pred             HHHHHHHHHHcccCCCCCC-----C-hHHHHH
Q 044568          230 LENLVKVGLWCVQDEPALR-----P-MKCAVM  255 (257)
Q Consensus       230 ~~~l~~l~~~cl~~~p~~R-----P-~~ei~~  255 (257)
                      ++.+.+++.+||+.||.+|     | ++|+++
T Consensus       225 s~~~~~li~~~L~~dp~~R~~~~r~t~~~il~  256 (316)
T d1fota_         225 NEDVKDLLSRLITRDLSQRLGNLQNGTEDVKN  256 (316)
T ss_dssp             CHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred             CHHHHHHHHHHhhhCHHhccccchhhHHHHHc
Confidence            5778999999999999999     5 677654

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=7.2e-45  Score=311.85  Aligned_cols=228  Identities=17%  Similarity=0.163  Sum_probs=182.3

Q ss_pred             ccccceeeeccc-CCCCCeeeccch---------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCC
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW---------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRN   73 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~---------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~   73 (257)
                      +.|+.||+++.. ++..+++|.+..         .+|++.+.         +++|+||+++.+.+...+..+||||||++
T Consensus        37 G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~---------~l~HpnIv~~~~~~~~~~~~~ivmE~~~g  107 (350)
T d1koaa2          37 GAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMS---------VLRHPTLVNLHDAFEDDNEMVMIYEFMSG  107 (350)
T ss_dssp             ETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHH---------HTCCTTBCCEEEEEEETTEEEEEECCCCS
T ss_pred             CcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHH---------hCCCCCCCcEEEEEEECCEEEEEEEcCCC
Confidence            678999999965 566778886542         23444444         88999999999999999999999999999


Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCC--CCceEEeeecccccCCCC--cc
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE--FWTAKILDFGLAKLPNED--FV  149 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~--~~~~kl~dfg~~~~~~~~--~~  149 (257)
                      |+|.+++.+ ....+++.++..++.||+.||.|||++   +|+||||||+|||++.  ++.+||+|||++......  ..
T Consensus       108 g~L~~~l~~-~~~~l~e~~~~~i~~qi~~aL~ylH~~---~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~~  183 (350)
T d1koaa2         108 GELFEKVAD-EHNKMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVK  183 (350)
T ss_dssp             CBHHHHHTC-TTSCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTSCCEEECCCTTCEECCTTSCEE
T ss_pred             CCHHHHHHh-hcCCCCHHHHHHHHHHHHHHHHHHHhc---CCeeeeechhHeeeccCCCCeEEEeecchheecccccccc
Confidence            999999975 456799999999999999999999999   9999999999999963  578999999999865433  34


Q ss_pred             cccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHH
Q 044568          150 IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKN  229 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (257)
                      ...||+.|+|||++.+..++.++||||+||++|||++|+.||.+...   ...+......     .   ...+.......
T Consensus       184 ~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~---~~~~~~i~~~-----~---~~~~~~~~~~~  252 (350)
T d1koaa2         184 VTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGEND---DETLRNVKSC-----D---WNMDDSAFSGI  252 (350)
T ss_dssp             EECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHT-----C---CCSCCGGGGGC
T ss_pred             eecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCCCH---HHHHHHHHhC-----C---CCCCcccccCC
Confidence            56889999999999999999999999999999999999999975421   1111111100     0   00001112234


Q ss_pred             HHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          230 LENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       230 ~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .+.+.+|+.+||+.||++|| ++|+++
T Consensus       253 s~~~~~li~~~L~~dP~~R~t~~eil~  279 (350)
T d1koaa2         253 SEDGKDFIRKLLLADPNTRMTIHQALE  279 (350)
T ss_dssp             CHHHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred             CHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            56789999999999999999 999986

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-45  Score=303.93  Aligned_cols=226  Identities=15%  Similarity=0.191  Sum_probs=170.8

Q ss_pred             ccccceeeecccCCCC----Ceeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEe
Q 044568            4 TKLSNFYRSSFNARNS----PWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIER   69 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~----~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E   69 (257)
                      +.|+.||+|.+..++.    +++|...          +.+|++.+.         ++.|+||+++.+.+. .+..++|||
T Consensus        18 G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~---------~l~HpnIv~l~~~~~-~~~~~iv~E   87 (273)
T d1mp8a_          18 GQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMR---------QFDHPHIVKLIGVIT-ENPVWIIME   87 (273)
T ss_dssp             CSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHH---------TCCCTTBCCEEEEEC-SSSCEEEEE
T ss_pred             CCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHH---------hCCCCCEeeEEEEEe-cCeEEEEEE
Confidence            6799999998765443    4565543          234444444         889999999999885 577899999


Q ss_pred             ecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC--
Q 044568           70 PVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED--  147 (257)
Q Consensus        70 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~--  147 (257)
                      ||++|+|.+++.. ....+++.+++.++.|++.||.|||++   +++||||||+||+++.++.+||+|||+++.....  
T Consensus        88 ~~~~g~l~~~~~~-~~~~l~~~~~~~~~~qi~~gl~ylH~~---~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~~~~~~  163 (273)
T d1mp8a_          88 LCTLGELRSFLQV-RKYSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTY  163 (273)
T ss_dssp             CCTTEEHHHHHHH-TTTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECC------------
T ss_pred             eccCCcHHhhhhc-cCCCCCHHHHHHHHHHHHHHhhhhccc---CeeccccchhheeecCCCcEEEccchhheeccCCcc
Confidence            9999999999875 567899999999999999999999999   9999999999999999999999999998764322  


Q ss_pred             --cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCC
Q 044568          148 --FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTK  224 (257)
Q Consensus       148 --~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (257)
                        .....+|+.|+|||.+.+..++.++|||||||++|||++ |..||.......   .....     ...      ....
T Consensus       164 ~~~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~~~~---~~~~i-----~~~------~~~~  229 (273)
T d1mp8a_         164 YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNND---VIGRI-----ENG------ERLP  229 (273)
T ss_dssp             -------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG---HHHHH-----HTT------CCCC
T ss_pred             eeccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCCCHHH---HHHHH-----HcC------CCCC
Confidence              234466788999999999999999999999999999998 888987552211   11100     000      0113


Q ss_pred             CCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          225 VDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       225 ~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      .+...++.+.+++.+||+.||++|| ++||++.|
T Consensus       230 ~~~~~~~~~~~li~~cl~~dp~~Rps~~ei~~~L  263 (273)
T d1mp8a_         230 MPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQL  263 (273)
T ss_dssp             CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHH
Confidence            4556678899999999999999999 99998754

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=1.1e-44  Score=310.85  Aligned_cols=228  Identities=18%  Similarity=0.185  Sum_probs=183.6

Q ss_pred             ccccceeeeccc-CCCCCeeeccch---------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCC
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW---------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRN   73 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~---------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~   73 (257)
                      +.|+.||++... +++.+++|.+.-         .+|++++.         ++.|+||+++.+.+...+..+||||||++
T Consensus        40 G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~---------~l~HpnIv~~~~~~~~~~~~~ivmE~~~g  110 (352)
T d1koba_          40 GAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMN---------QLHHPKLINLHDAFEDKYEMVLILEFLSG  110 (352)
T ss_dssp             ETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHT---------TCCSTTBCCEEEEEECSSEEEEEEECCCC
T ss_pred             CCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHH---------hCCCCCCCcEEEEEEECCEEEEEEEcCCC
Confidence            578999999964 567788887542         33444444         88999999999999999999999999999


Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeC--CCCceEEeeecccccCCCC--cc
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD--EFWTAKILDFGLAKLPNED--FV  149 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~--~~~~~kl~dfg~~~~~~~~--~~  149 (257)
                      |+|.+.+.. ....+++.++..++.||+.||.|||++   ||+||||||+|||++  .++.+||+|||++......  ..
T Consensus       111 g~L~~~~~~-~~~~l~e~~~~~i~~qi~~aL~ylH~~---~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~~~~~  186 (352)
T d1koba_         111 GELFDRIAA-EDYKMSEAEVINYMRQACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVK  186 (352)
T ss_dssp             CBHHHHTTC-TTCCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCEE
T ss_pred             ChHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccccccccccccCCCeEEEeecccceecCCCCcee
Confidence            999998864 556799999999999999999999999   999999999999997  5789999999999865433  35


Q ss_pred             cccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHH
Q 044568          150 IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKN  229 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (257)
                      ...+|+.|+|||.+.+..++.++||||+||++|||++|+.||.+....   ..+....     ..   ....+.......
T Consensus       187 ~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~---~~~~~i~-----~~---~~~~~~~~~~~~  255 (352)
T d1koba_         187 VTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDL---ETLQNVK-----RC---DWEFDEDAFSSV  255 (352)
T ss_dssp             EECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHH---HHHHHHH-----HC---CCCCCSSTTTTS
T ss_pred             eccCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHH---HHHHHHH-----hC---CCCCCcccccCC
Confidence            568899999999999999999999999999999999999999754211   1111100     00   000011223345


Q ss_pred             HHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          230 LENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       230 ~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ++.+.+|+.+||+.||.+|| ++|+++
T Consensus       256 s~~~~~li~~~L~~dp~~R~s~~eil~  282 (352)
T d1koba_         256 SPEAKDFIKNLLQKEPRKRLTVHDALE  282 (352)
T ss_dssp             CHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             CHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            67889999999999999999 999975

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-45  Score=305.28  Aligned_cols=227  Identities=17%  Similarity=0.196  Sum_probs=181.9

Q ss_pred             ccccceeeecc-cCCCCCeeeccc---------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEE
Q 044568            4 TKLSNFYRSSF-NARNSPWISRVS---------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~-~~~~~~~i~~~~---------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV   67 (257)
                      +.|+.||++.. .++..+++|.+.               +.+|++.+.         ++.|+||+++.+.+...+..+||
T Consensus        21 G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~---------~l~HpnIv~~~~~~~~~~~~~iv   91 (293)
T d1jksa_          21 GQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILK---------EIQHPNVITLHEVYENKTDVILI   91 (293)
T ss_dssp             CSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHH---------HCCCTTBCCEEEEEECSSEEEEE
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHH---------hCCCCCCCcEEEEEEECCEEEEE
Confidence            57899999996 456678887542               356666666         88899999999999999999999


Q ss_pred             EeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCC----ceEEeeeccccc
Q 044568           68 ERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW----TAKILDFGLAKL  143 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~----~~kl~dfg~~~~  143 (257)
                      ||||++|+|.+++..  ...+++.++..++.|++.||.|||++   +|+||||||+||+++.++    .+|++|||++..
T Consensus        92 ~E~~~gg~L~~~i~~--~~~l~~~~~~~~~~qi~~al~yLH~~---~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~  166 (293)
T d1jksa_          92 LELVAGGELFDFLAE--KESLTEEEATEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHK  166 (293)
T ss_dssp             EECCCSCBHHHHHHH--HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCSSSSSCCEEECCCTTCEE
T ss_pred             EEcCCCccccchhcc--ccccchhHHHHHHHHHHHHHHhhhhc---ceeecccccceEEEecCCCcccceEecchhhhhh
Confidence            999999999999973  45799999999999999999999999   999999999999998766    499999999876


Q ss_pred             CCC--CcccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc
Q 044568          144 PNE--DFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR  221 (257)
Q Consensus       144 ~~~--~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (257)
                      ...  ......+|+.|+|||.+.+..++.++||||+||++|||++|+.||.+....   ...........   ..     
T Consensus       167 ~~~~~~~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~---~~~~~i~~~~~---~~-----  235 (293)
T d1jksa_         167 IDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQ---ETLANVSAVNY---EF-----  235 (293)
T ss_dssp             CTTSCBCSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH---HHHHHHHTTCC---CC-----
T ss_pred             cCCCccccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCCCHH---HHHHHHHhcCC---CC-----
Confidence            543  234557888999999999989999999999999999999999999755211   11111100000   00     


Q ss_pred             CCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          222 GTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       222 ~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      +...+...++.+.+++.+||+.||.+|| ++|+++
T Consensus       236 ~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~  270 (293)
T d1jksa_         236 EDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ  270 (293)
T ss_dssp             CHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             CchhcCCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            0011122346788999999999999999 999975

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-44  Score=305.68  Aligned_cols=228  Identities=20%  Similarity=0.278  Sum_probs=178.5

Q ss_pred             ccccceeeecccCCCC----Ceeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeee-cCceeEEE
Q 044568            4 TKLSNFYRSSFNARNS----PWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL-TSVSGKIE   68 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~----~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~-~~~~~lV~   68 (257)
                      +.|+.||+|++..++.    +++|...          |.+|++.+.         +++|+||+++.+.+.. ....++||
T Consensus        38 G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~---------~l~HpnIv~~~g~~~~~~~~~~lv~  108 (311)
T d1r0pa_          38 GHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMK---------DFSHPNVLSLLGICLRSEGSPLVVL  108 (311)
T ss_dssp             ETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHH---------TCCCTTBCCCCEEEEETTTEEEEEE
T ss_pred             cCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHH---------hCCCCCEeEEeEEEEecCCceEEEE
Confidence            5789999999866542    5677643          345555555         8899999999999875 45789999


Q ss_pred             eecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc
Q 044568           69 RPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF  148 (257)
Q Consensus        69 E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~  148 (257)
                      |||++|+|.+++.. ....+++.++..++.|++.||.|+|+.   +|+||||||+|||+++++.+||+|||+++......
T Consensus       109 E~~~~g~l~~~~~~-~~~~~~~~~~~~i~~qia~gL~~lH~~---~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~  184 (311)
T d1r0pa_         109 PYMKHGDLRNFIRN-ETHNPTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKE  184 (311)
T ss_dssp             ECCTTCBHHHHHHC-TTCCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTT
T ss_pred             EEeecCchhhhhcc-ccccchHHHHHHHHHHHHHhhhhhccc---CcccCCccHHhEeECCCCCEEEecccchhhccccc
Confidence            99999999999986 666788999999999999999999999   99999999999999999999999999997543221


Q ss_pred             -------ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc
Q 044568          149 -------VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR  221 (257)
Q Consensus       149 -------~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (257)
                             ....+|+.|+|||.+....++.++||||||+++|||++|..||........   ......         .- .
T Consensus       185 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~~~~~---~~~~i~---------~g-~  251 (311)
T d1r0pa_         185 FDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFD---ITVYLL---------QG-R  251 (311)
T ss_dssp             CCCTTCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC---------CHHHHH---------TT-C
T ss_pred             cccceecccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCCCHHH---HHHHHH---------cC-C
Confidence                   234577889999999999999999999999999999998888864422111   001000         00 0


Q ss_pred             CCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          222 GTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       222 ~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ....+...++.+.+++.+||+.||++|| +.||++.|
T Consensus       252 ~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~L  288 (311)
T d1r0pa_         252 RLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRI  288 (311)
T ss_dssp             CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCCCcccCcHHHHHHHHHHcCCCHhHCcCHHHHHHHH
Confidence            1123445567899999999999999999 99998864

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-45  Score=303.22  Aligned_cols=227  Identities=19%  Similarity=0.202  Sum_probs=173.7

Q ss_pred             ccccceeeecccCCC----CCeeeccc------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEE
Q 044568            4 TKLSNFYRSSFNARN----SPWISRVS------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~----~~~i~~~~------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV   67 (257)
                      +.|+.||+|++....    .++||...            |.+|++.+.         +++|+||+++.+.+.. +..++|
T Consensus        19 G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~---------~l~H~nIv~~~g~~~~-~~~~lv   88 (273)
T d1u46a_          19 GSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMH---------SLDHRNLIRLYGVVLT-PPMKMV   88 (273)
T ss_dssp             ---CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHH---------HCCCTTBCCEEEEECS-SSCEEE
T ss_pred             CCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHH---------hCCCCCEEEEEEEEee-cchhee
Confidence            679999999875443    34666543            334444444         8899999999999965 567899


Q ss_pred             EeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC
Q 044568           68 ERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED  147 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~  147 (257)
                      ||||++|++.+.+.. ....+++..++.++.|++.||.|||++   +|+||||||+||+++.++.+||+|||+++.....
T Consensus        89 ~e~~~~~~l~~~~~~-~~~~l~~~~~~~~~~qi~~gl~ylH~~---~iiHrDikp~NIll~~~~~vkl~DfGl~~~~~~~  164 (273)
T d1u46a_          89 TELAPLGSLLDRLRK-HQGHFLLGTLSRYAVQVAEGMGYLESK---RFIHRDLAARNLLLATRDLVKIGDFGLMRALPQN  164 (273)
T ss_dssp             EECCTTCBHHHHHHH-HGGGSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCEECCC-
T ss_pred             eeeecCcchhhhhhc-ccCCCCHHHHHHHHHHHHHHHHHhhhC---CEeeeeecHHHhccccccceeeccchhhhhcccC
Confidence            999999999999875 456799999999999999999999999   9999999999999999999999999999865433


Q ss_pred             c------ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhh
Q 044568          148 F------VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLV  220 (257)
Q Consensus       148 ~------~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (257)
                      .      ....++..|+|||.+.+..++.++||||||+++|||+| |..||......   .......    .     ...
T Consensus       165 ~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~~~~---~~~~~i~----~-----~~~  232 (273)
T d1u46a_         165 DDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGS---QILHKID----K-----EGE  232 (273)
T ss_dssp             CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHH---HHHHHHH----T-----SCC
T ss_pred             CCcceecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCcCHH---HHHHHHH----h-----CCC
Confidence            2      23345678999999999999999999999999999998 89999754111   1111100    0     000


Q ss_pred             cCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          221 RGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       221 ~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                       ..+.+...+..+.+++.+||+.||++|| ++||.++|
T Consensus       233 -~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~ei~~~L  269 (273)
T d1u46a_         233 -RLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFL  269 (273)
T ss_dssp             -CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             -CCCCcccccHHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence             0123344567899999999999999999 99998865

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-44  Score=304.83  Aligned_cols=217  Identities=17%  Similarity=0.168  Sum_probs=179.0

Q ss_pred             ccccceeeecc-cCCCCCeeeccch------------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEee
Q 044568            4 TKLSNFYRSSF-NARNSPWISRVSW------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~-~~~~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~   70 (257)
                      +.|+.||+++. .++..+++|.+.-            .+|++.+.         ++.|+||+++...+...+..++||||
T Consensus        16 G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~---------~l~hp~Iv~l~~~~~~~~~~~iv~ey   86 (337)
T d1o6la_          16 GTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQ---------NTRHPFLTALKYAFQTHDRLCFVMEY   86 (337)
T ss_dssp             CSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHH---------SCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             CcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHH---------hCCCCCEEEEEeeeccccccccceec
Confidence            57899999996 4567778886542            23333333         88999999999999999999999999


Q ss_pred             cCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC---C
Q 044568           71 VRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE---D  147 (257)
Q Consensus        71 ~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~---~  147 (257)
                      |++|+|.+++.  ....+++..++.++.|++.||.|||++   +|+||||||+|||++.++.+||+|||+++....   .
T Consensus        87 ~~gg~L~~~~~--~~~~~~e~~~~~~~~qil~al~ylH~~---~iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~~~~~  161 (337)
T d1o6la_          87 ANGGELFFHLS--RERVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGAT  161 (337)
T ss_dssp             CTTCBHHHHHH--HHSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTCC
T ss_pred             cCCCchhhhhh--cccCCcHHHHHHHHHHHhhhhhhhhhc---CccccccCHHHeEecCCCCEEEeecccccccccCCcc
Confidence            99999999998  456799999999999999999999999   999999999999999999999999999985432   2


Q ss_pred             cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCH
Q 044568          148 FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDK  227 (257)
Q Consensus       148 ~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (257)
                      .....||+.|+|||++.+..|+.++||||+||++|||++|+.||......   ......            ......++.
T Consensus       162 ~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~~~~---~~~~~i------------~~~~~~~p~  226 (337)
T d1o6la_         162 MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE---RLFELI------------LMEEIRFPR  226 (337)
T ss_dssp             BCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHH---HHHHHH------------HHCCCCCCT
T ss_pred             cccceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCCcCHH---HHHHHH------------hcCCCCCCc
Confidence            34567899999999999999999999999999999999999999865211   111000            111123455


Q ss_pred             HHHHHHHHHHHHcccCCCCCCC
Q 044568          228 KNLENLVKVGLWCVQDEPALRP  249 (257)
Q Consensus       228 ~~~~~l~~l~~~cl~~~p~~RP  249 (257)
                      ...+++.+|+.+||+.||.+||
T Consensus       227 ~~s~~~~dli~~~L~~dP~~R~  248 (337)
T d1o6la_         227 TLSPEAKSLLAGLLKKDPKQRL  248 (337)
T ss_dssp             TSCHHHHHHHHHHTCSSTTTST
T ss_pred             cCCHHHHHHHHhhccCCchhhc
Confidence            5667889999999999999998

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-44  Score=306.49  Aligned_cols=225  Identities=19%  Similarity=0.204  Sum_probs=176.7

Q ss_pred             ccccceeeecccCCCC-----Ceeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEE
Q 044568            4 TKLSNFYRSSFNARNS-----PWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIE   68 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~-----~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~   68 (257)
                      +.|+.||+|+....+.     +++|...          +.+|++.+.         +++|+||+++.+++.. +..++++
T Consensus        20 G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~---------~l~HpnIv~l~g~~~~-~~~~~v~   89 (317)
T d1xkka_          20 GAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMA---------SVDNPHVCRLLGICLT-STVQLIT   89 (317)
T ss_dssp             CSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHH---------HCCCTTBCCEEEEEES-SSEEEEE
T ss_pred             CCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHH---------hCCCCCEeeEEEEEec-CCeeEEE
Confidence            6799999999765543     5666532          345555555         8899999999999876 4567889


Q ss_pred             eecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc
Q 044568           69 RPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF  148 (257)
Q Consensus        69 E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~  148 (257)
                      ||+.+|+|.+.+.. ....+++..++.++.|++.||.|||++   +|+||||||+||+++.++.+||+|||+++......
T Consensus        90 e~~~~~~l~~~~~~-~~~~~~~~~~~~i~~qi~~gl~yLH~~---~iiHrDlKp~NIll~~~~~~kl~DFGla~~~~~~~  165 (317)
T d1xkka_          90 QLMPFGCLLDYVRE-HKDNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEE  165 (317)
T ss_dssp             ECCTTCBHHHHHHH-TSSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCCSHHHHTTTTC
T ss_pred             EeccCCcccccccc-cccCCCHHHHHHHHHHHHHHHHHHHHc---CcccCcchhhcceeCCCCCeEeeccccceeccccc
Confidence            99999999999876 677899999999999999999999999   99999999999999999999999999998643222


Q ss_pred             -----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcC
Q 044568          149 -----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRG  222 (257)
Q Consensus       149 -----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (257)
                           ....+|+.|+|||.+.+..++.++|||||||++|||+| |..||.......    +.....         ... .
T Consensus       166 ~~~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~~~~----~~~~i~---------~~~-~  231 (317)
T d1xkka_         166 KEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASE----ISSILE---------KGE-R  231 (317)
T ss_dssp             C--------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCGGG----HHHHHH---------HTC-C
T ss_pred             ccccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCCHHH----HHHHHH---------cCC-C
Confidence                 23357889999999999999999999999999999998 788887542111    111100         000 1


Q ss_pred             CCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHh
Q 044568          223 TKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMM  256 (257)
Q Consensus       223 ~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~  256 (257)
                      ...+..+++.+.+++.+||+.||.+|| +.||++.
T Consensus       232 ~~~p~~~~~~~~~li~~cl~~dP~~RPs~~eil~~  266 (317)
T d1xkka_         232 LPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE  266 (317)
T ss_dssp             CCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCcccCHHHHHHHHHhCCCChhhCcCHHHHHHH
Confidence            133455667899999999999999999 9999865

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-44  Score=307.69  Aligned_cols=229  Identities=15%  Similarity=0.150  Sum_probs=180.4

Q ss_pred             cccccceeeecc-cCCCCCeeeccc----hhhhHHHHhHhhhccccccccCCceeeeceeeee----cCceeEEEeecCC
Q 044568            3 CTKLSNFYRSSF-NARNSPWISRVS----WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL----TSVSGKIERPVRN   73 (257)
Q Consensus         3 ~~~~~~~y~~~~-~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~----~~~~~lV~E~~~~   73 (257)
                      .+.++.||+++. .+++.+|+|.++    ..+|++.+.        ....|+||+++.+.+.+    ....+||||||+|
T Consensus        22 ~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~E~~~~~--------~~~~hpnIv~l~~~~~~~~~~~~~~~ivmEy~~g   93 (335)
T d2ozaa1          22 LGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHW--------RASQCPHIVRIVDVYENLYAGRKCLLIVMECLDG   93 (335)
T ss_dssp             ECSSCEEEEEEETTTCCEEEEEEEECSHHHHHHHHHHH--------HHTTSTTBCCEEEEEEEEETTEEEEEEEEECCCS
T ss_pred             eccCeEEEEEEECCCCCEEEEEEECCcHHHHHHHHHHH--------HhcCCCCCCeEEEEEeecccCCCEEEEEEECCCC
Confidence            478999999986 556777888765    345555443        12369999999998875    4678999999999


Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCC---CCceEEeeecccccCC--CCc
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE---FWTAKILDFGLAKLPN--EDF  148 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~---~~~~kl~dfg~~~~~~--~~~  148 (257)
                      |+|.++|.......+++.++..++.|++.||.|||++   +|+||||||+|||++.   .+.+||+|||+++...  ...
T Consensus        94 g~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH~~---~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~~~~~~~  170 (335)
T d2ozaa1          94 GELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSL  170 (335)
T ss_dssp             EEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCSSTTCCEEECCCTTCEECCCCCCC
T ss_pred             CcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHc---CCccccccccccccccccccccccccccceeeeccCCCcc
Confidence            9999999864456899999999999999999999999   9999999999999985   4579999999987543  333


Q ss_pred             ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc-CC-CCC
Q 044568          149 VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR-GT-KVD  226 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~  226 (257)
                      ....||+.|+|||.+.+..|+.++||||+||++|+|+||+.||...........+             ...+. .. .++
T Consensus       171 ~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~~~~~~~-------------~~~i~~~~~~~~  237 (335)
T d2ozaa1         171 TTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGM-------------KTRIRMGQYEFP  237 (335)
T ss_dssp             CCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC---------------------CCCSCSSSCC
T ss_pred             ccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCHHHHHHHH-------------HHHHhcCCCCCC
Confidence            5668899999999999889999999999999999999999999765322211000             00000 00 111


Q ss_pred             ----HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          227 ----KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       227 ----~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                          ...++++.+|+.+||+.||++|| +.|+++
T Consensus       238 ~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~  271 (335)
T d2ozaa1         238 NPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN  271 (335)
T ss_dssp             TTHHHHSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             CcccccCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence                23457899999999999999999 999975

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.2e-44  Score=306.59  Aligned_cols=223  Identities=15%  Similarity=0.097  Sum_probs=185.3

Q ss_pred             cccccceeeeccc-CCCCCeeeccch------------hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEe
Q 044568            3 CTKLSNFYRSSFN-ARNSPWISRVSW------------TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIER   69 (257)
Q Consensus         3 ~~~~~~~y~~~~~-~~~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E   69 (257)
                      .+.|+.||++... +++.+|+|.+.-            .+|++.+.         .+.|+||+++.+.+...+..++|||
T Consensus        51 ~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~---------~l~hpnIv~~~~~~~~~~~~~~v~e  121 (350)
T d1rdqe_          51 TGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQ---------AVNFPFLVKLEFSFKDNSNLYMVME  121 (350)
T ss_dssp             ECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHT---------TCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             cCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHH---------HcCCCcEeecccccccccccccccc
Confidence            3679999999864 577788886541            23333333         8899999999999999999999999


Q ss_pred             ecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCcc
Q 044568           70 PVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDFV  149 (257)
Q Consensus        70 ~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~~  149 (257)
                      |+.+|+|.+++.  ....+++.+++.++.||+.||.|||++   +|+||||||+|||++.++.+||+|||+++.......
T Consensus       122 ~~~~g~l~~~l~--~~~~l~e~~~~~i~~qi~~aL~yLH~~---~iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~~~~  196 (350)
T d1rdqe_         122 YVAGGEMFSHLR--RIGRFSEPHARFYAAQIVLTFEYLHSL---DLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTW  196 (350)
T ss_dssp             CCTTCBHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECSSCBC
T ss_pred             cccccchhhhHh--hcCCCCHHHHHHHHHHHHHHHHHHHhC---CEecCcCCHHHcccCCCCCEEeeeceeeeecccccc
Confidence            999999999997  445799999999999999999999999   999999999999999999999999999998777667


Q ss_pred             cccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc-CCCCCHH
Q 044568          150 IDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR-GTKVDKK  228 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  228 (257)
                      ...||+.|+|||++.+..++.++|||||||++|||++|+.||....   .......             ... ....+..
T Consensus       197 ~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~---~~~~~~~-------------i~~~~~~~p~~  260 (350)
T d1rdqe_         197 TLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQ---PIQIYEK-------------IVSGKVRFPSH  260 (350)
T ss_dssp             CCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS---HHHHHHH-------------HHHCCCCCCTT
T ss_pred             cccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCCcC---HHHHHHH-------------HhcCCCCCCcc
Confidence            7789999999999999999999999999999999999999997542   1111111             111 1123445


Q ss_pred             HHHHHHHHHHHcccCCCCCC-----C-hHHHHH
Q 044568          229 NLENLVKVGLWCVQDEPALR-----P-MKCAVM  255 (257)
Q Consensus       229 ~~~~l~~l~~~cl~~~p~~R-----P-~~ei~~  255 (257)
                      .++.+.+++.+||+.||.+|     | ++|+++
T Consensus       261 ~s~~~~~li~~~L~~dP~kR~~~~r~t~~ell~  293 (350)
T d1rdqe_         261 FSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN  293 (350)
T ss_dssp             CCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred             CCHHHHHHHHHHhhhCHHhccccccccHHHHHc
Confidence            56788999999999999999     6 778764

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-44  Score=303.43  Aligned_cols=227  Identities=22%  Similarity=0.294  Sum_probs=181.1

Q ss_pred             cccccceeeecccCCCC---Ceeeccc----------hhhhHHHHhHhhhccccccc-cCCceeeeceeeeecCceeEEE
Q 044568            3 CTKLSNFYRSSFNARNS---PWISRVS----------WTADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVSGKIE   68 (257)
Q Consensus         3 ~~~~~~~y~~~~~~~~~---~~i~~~~----------~~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~~lV~   68 (257)
                      ++.|+.||+|++..++.   ++||+..          +.+|++.+.         ++ +|+||+++.+.+...+..++||
T Consensus        20 ~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~---------~l~~HpnIv~~~~~~~~~~~~~iV~   90 (309)
T d1fvra_          20 EGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLC---------KLGHHPNIINLLGACEHRGYLYLAI   90 (309)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHT---------TCCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             eCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHH---------hccCCCCEeeEEEEEecCCeeEEEE
Confidence            46799999999877654   4555532          345555555         66 6999999999999999999999


Q ss_pred             eecCCCCHHHHHhcc--------------CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceE
Q 044568           69 RPVRNGSLTDIIFCS--------------AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAK  134 (257)
Q Consensus        69 E~~~~gsL~~~l~~~--------------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~k  134 (257)
                      ||+++|+|.++|+..              ....+++.++.+++.|++.||.|+|++   +++||||||+|||++.++.+|
T Consensus        91 ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~---~iiHrDlkp~NIL~~~~~~~k  167 (309)
T d1fvra_          91 EYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENYVAK  167 (309)
T ss_dssp             CCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCEE
T ss_pred             EecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcC---CccccccccceEEEcCCCceE
Confidence            999999999999742              246799999999999999999999999   999999999999999999999


Q ss_pred             EeeecccccCCCCc--ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCC-CCCcCCCChhhHHHHHHHHHhh
Q 044568          135 ILDFGLAKLPNEDF--VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRK-NMEIDASKPEEIILTNWVYKCF  211 (257)
Q Consensus       135 l~dfg~~~~~~~~~--~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~-pf~~~~~~~~~~~~~~~~~~~~  211 (257)
                      |+|||+++......  ....+|..|+|||.+.+..++.++||||||+++|||++|.. ||....  ...  +.       
T Consensus       168 l~DfG~a~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~~--~~~--~~-------  236 (309)
T d1fvra_         168 IADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT--CAE--LY-------  236 (309)
T ss_dssp             ECCTTCEESSCEECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC--HHH--HH-------
T ss_pred             EccccccccccccccccceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCCCCCC--HHH--HH-------
Confidence            99999987544332  34457889999999999999999999999999999999765 565331  111  10       


Q ss_pred             hhhhhhhhhc--CCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          212 INRELNKLVR--GTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       212 ~~~~~~~~~~--~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                           ..+..  ....+...++.+.+|+.+||+.||++|| |+||++.|
T Consensus       237 -----~~i~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPs~~eil~~L  280 (309)
T d1fvra_         237 -----EKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSL  280 (309)
T ss_dssp             -----HHGGGTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             -----HHHHhcCCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence                 01111  1134455678899999999999999999 99998754

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.9e-44  Score=303.60  Aligned_cols=228  Identities=18%  Similarity=0.207  Sum_probs=180.1

Q ss_pred             ccccceeeeccc------CCCCCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEE
Q 044568            4 TKLSNFYRSSFN------ARNSPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~~------~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV   67 (257)
                      +.|+.||+|+..      ++..++||.+.          |.+|++.+.         +++|+|++++.+.+...+..++|
T Consensus        24 G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~---------~l~h~niv~~~~~~~~~~~~~~v   94 (301)
T d1lufa_          24 GAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMA---------EFDNPNIVKLLGVCAVGKPMCLL   94 (301)
T ss_dssp             CSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHH---------TCCCTTBCCEEEEECSSSSCEEE
T ss_pred             CCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHH---------hcCCCCcccceeeeccCCceEEE
Confidence            679999999864      23456787653          455555555         88999999999999999999999


Q ss_pred             EeecCCCCHHHHHhcc----------------------CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCce
Q 044568           68 ERPVRNGSLTDIIFCS----------------------AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNI  125 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~----------------------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~ni  125 (257)
                      |||+++|+|.+++...                      ....+++.++..++.|++.||.|||++   +++||||||+||
T Consensus        95 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~---~ivHrDlKp~NI  171 (301)
T d1lufa_          95 FEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---KFVHRDLATRNC  171 (301)
T ss_dssp             EECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGE
T ss_pred             EEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccC---CeEeeEEcccce
Confidence            9999999999999642                      123588999999999999999999999   999999999999


Q ss_pred             eeCCCCceEEeeecccccCCCC-----cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcC-CCCCcCCCChh
Q 044568          126 LMDEFWTAKILDFGLAKLPNED-----FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCR-KNMEIDASKPE  199 (257)
Q Consensus       126 l~~~~~~~kl~dfg~~~~~~~~-----~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~-~pf~~~~~~~~  199 (257)
                      |++.++.+||+|||+++.....     .....+++.|+|||.+.+..++.++|||||||++|||++|. +||.... .. 
T Consensus       172 Lld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~~-~~-  249 (301)
T d1lufa_         172 LVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMA-HE-  249 (301)
T ss_dssp             EECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC-HH-
T ss_pred             EECCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHccCCCCCCCCC-HH-
Confidence            9999999999999998743222     13446778899999999999999999999999999999986 5665431 11 


Q ss_pred             hHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          200 EIILTNWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      + .....     ....      ....+...++++.+++.+||+.||++|| |.||+++|
T Consensus       250 e-~~~~v-----~~~~------~~~~p~~~~~~~~~li~~cl~~~P~~RPt~~ev~~~L  296 (301)
T d1lufa_         250 E-VIYYV-----RDGN------ILACPENCPLELYNLMRLCWSKLPADRPSFCSIHRIL  296 (301)
T ss_dssp             H-HHHHH-----HTTC------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             H-HHHHH-----HcCC------CCCCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence            1 11110     0000      1134555667899999999999999999 99998865

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-44  Score=304.16  Aligned_cols=249  Identities=20%  Similarity=0.159  Sum_probs=177.9

Q ss_pred             ccccceeeecccCCCCCeeeccchhhhHHHHhHhhhccccccccCCceeeeceeeeecC----ceeEEEeecCCCCHHHH
Q 044568            4 TKLSNFYRSSFNARNSPWISRVSWTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTS----VSGKIERPVRNGSLTDI   79 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~----~~~lV~E~~~~gsL~~~   79 (257)
                      +.|+.||+|++ ++..++||.+.....-+...-.... ....+.|+||+++.+.+...+    ..++|||||++|+|.++
T Consensus        14 G~fg~Vy~~~~-~g~~vAvK~~~~~~~~~~~~e~ei~-~~~~~~HpnIv~~~~~~~~~~~~~~~~~lv~Ey~~~g~L~~~   91 (303)
T d1vjya_          14 GRFGEVWRGKW-RGEEVAVKIFSSREERSWFREAEIY-QTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDY   91 (303)
T ss_dssp             CSSSEEEEEEE-TTEEEEEEEECGGGHHHHHHHHHHH-TSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHH
T ss_pred             CCCeEEEEEEE-CCEEEEEEEECccchhHHHHHHHHH-HHhhCCCCcCcceEEEEEeCCCcceEEEEEEecccCCCHHHH
Confidence            67899999996 5778999987643322222211111 334678999999999998654    57899999999999999


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHHHHHHHhhCC-----CCCeeeccCCCCceeeCCCCceEEeeecccccCCC-------C
Q 044568           80 IFCSAERNPYWNQRVRIALDVAKGILYLHDEC-----EPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE-------D  147 (257)
Q Consensus        80 l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~-----~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~-------~  147 (257)
                      +++   ..+++.++..++.|++.||.|+|+..     +.+|+||||||+|||++.++.+||+|||+++....       .
T Consensus        92 l~~---~~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl~~~~~~~~~~~~~~  168 (303)
T d1vjya_          92 LNR---YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIA  168 (303)
T ss_dssp             HHH---CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEECC-
T ss_pred             Hhc---CCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEecCccccccCCCcceecc
Confidence            974   46999999999999999999999620     12999999999999999999999999999875322       1


Q ss_pred             cccccCCCCccCcccccCCC------CCccccchhHHHHHHHHHhcCCCCCcCCCChhh-HHH--HHHHHHhhhhhhhhh
Q 044568          148 FVIDKRDKGYMAPECYKRTP------ISVKADVYGYGIVLLETICCRKNMEIDASKPEE-IIL--TNWVYKCFINRELNK  218 (257)
Q Consensus       148 ~~~~~~~~~~~aPE~~~~~~------~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~-~~~--~~~~~~~~~~~~~~~  218 (257)
                      .....||+.|+|||++....      ++.++|||||||++|||+||..||......... ...  ...............
T Consensus       169 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (303)
T d1vjya_         169 PNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQ  248 (303)
T ss_dssp             ---CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTS
T ss_pred             ccceecccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcccccchHHHHHHHHhcc
Confidence            23457899999999987542      567899999999999999999888643211100 000  000000000001111


Q ss_pred             hhcCC----CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          219 LVRGT----KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       219 ~~~~~----~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      ..++.    ..+.+....+.+++.+||+.||++|| +.||++.|
T Consensus       249 ~~~p~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ei~~~L  292 (303)
T d1vjya_         249 KLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTL  292 (303)
T ss_dssp             CCCCCCCGGGGGCHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHH
T ss_pred             ccCCCCCcccCChHHHHHHHHHHHHHcccCHhHCcCHHHHHHHH
Confidence            11111    12344567899999999999999999 99998865

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.4e-43  Score=305.35  Aligned_cols=234  Identities=16%  Similarity=0.120  Sum_probs=180.9

Q ss_pred             ccccceeeeccc-CCCCCeeeccchhh----h--HHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCH
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSWTA----D--IEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSL   76 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~~~----~--~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL   76 (257)
                      +.++.||+++.. ++..+|+|.+.-..    .  .........-..+..+.|+||+++.+.+...+..+||||||++|+|
T Consensus        15 G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~~ivmE~~~gg~L   94 (364)
T d1omwa3          15 GGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDL   94 (364)
T ss_dssp             CSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEEEEECCCCSCBH
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCEEEEEEEecCCCcH
Confidence            679999999965 56778888754211    0  0011100001133477899999999999999999999999999999


Q ss_pred             HHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC-CcccccCCC
Q 044568           77 TDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE-DFVIDKRDK  155 (257)
Q Consensus        77 ~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~-~~~~~~~~~  155 (257)
                      .++|.  ....+++.++..++.|++.||.|||++   +++||||||+|||++.++.+||+|||++..... ......||+
T Consensus        95 ~~~l~--~~~~~~e~~~~~~~~qi~~aL~ylH~~---~iiHrDlKP~NILl~~~g~iKl~DFGla~~~~~~~~~~~~GT~  169 (364)
T d1omwa3          95 HYHLS--QHGVFSEADMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTH  169 (364)
T ss_dssp             HHHHH--HHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECSSSCEEECCCTTCEECSSSCCCSCCSCG
T ss_pred             HHHHH--hcccccHHHHHHHHHHHHHHHHHHHHC---CccceeeccceeEEcCCCcEEEeeeceeeecCCCccccccccc
Confidence            99997  456789999999999999999999999   999999999999999999999999999885443 335567999


Q ss_pred             CccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHH
Q 044568          156 GYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLV  234 (257)
Q Consensus       156 ~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  234 (257)
                      .|+|||.+.. ..++.++|||||||++|||++|+.||.......... +..           .........+...++.+.
T Consensus       170 ~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~-~~~-----------~~~~~~~~~~~~~s~~~~  237 (364)
T d1omwa3         170 GYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHE-IDR-----------MTLTMAVELPDSFSPELR  237 (364)
T ss_dssp             GGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSSCHHH-HHH-----------HSSSCCCCCCSSSCHHHH
T ss_pred             ccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCCHHHHHH-HHH-----------hcccCCCCCCCCCCHHHH
Confidence            9999999975 468999999999999999999999998653322110 000           001111233445567899


Q ss_pred             HHHHHcccCCCCCCC-h-----HHHH
Q 044568          235 KVGLWCVQDEPALRP-M-----KCAV  254 (257)
Q Consensus       235 ~l~~~cl~~~p~~RP-~-----~ei~  254 (257)
                      +++.+||+.||++|| +     +|++
T Consensus       238 ~li~~~L~~dP~~R~t~~~~~a~eil  263 (364)
T d1omwa3         238 SLLEGLLQRDVNRRLGCLGRGAQEVK  263 (364)
T ss_dssp             HHHHHHTCSSTTTSTTTSSSTHHHHH
T ss_pred             HHHHHHcccCHHHhCCCcccCHHHHH
Confidence            999999999999999 5     5664

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=1.1e-43  Score=295.46  Aligned_cols=227  Identities=15%  Similarity=0.175  Sum_probs=179.7

Q ss_pred             ccccceeeeccc-CCCCCeeeccc------------------hhhhHHHHhHhhhcccccccc-CCceeeeceeeeecCc
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS------------------WTADIEVLSVAMRGSKCTRIR-GGLLLNVPVRAKLTSV   63 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~------------------~~~~~~~~~~~~~~~~~~~~~-h~~i~~~~~~~~~~~~   63 (257)
                      +.++.||+++.. +++.+++|.+.                  +.+|++.+.         ++. |+||+++.+++...+.
T Consensus        14 G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~---------~l~~hpnIv~~~~~~~~~~~   84 (277)
T d1phka_          14 GVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILR---------KVSGHPNIIQLKDTYETNTF   84 (277)
T ss_dssp             CSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHH---------HHTTCTTBCCEEEEEECSSE
T ss_pred             CcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHH---------HhcCCCCeEEEEeecccCcc
Confidence            468899999964 56677787642                  233444444         776 9999999999999999


Q ss_pred             eeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeeccccc
Q 044568           64 SGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKL  143 (257)
Q Consensus        64 ~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~  143 (257)
                      .+||||||++|+|.++|.  ....+++.+++.++.||+.||.|||++   +|+||||||+||+++.++.+||+|||++..
T Consensus        85 ~~ivmE~~~~g~L~~~l~--~~~~l~e~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~Nill~~~~~~kl~DFG~a~~  159 (277)
T d1phka_          85 FFLVFDLMKKGELFDYLT--EKVTLSEKETRKIMRALLEVICALHKL---NIVHRDLKPENILLDDDMNIKLTDFGFSCQ  159 (277)
T ss_dssp             EEEEEECCTTCBHHHHHH--HHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred             eEEEEEcCCCchHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHHc---CCcccccccceEEEcCCCCeEEccchheeE
Confidence            999999999999999997  445799999999999999999999999   999999999999999999999999999986


Q ss_pred             CCCC--cccccCCCCccCccccc------CCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhh
Q 044568          144 PNED--FVIDKRDKGYMAPECYK------RTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRE  215 (257)
Q Consensus       144 ~~~~--~~~~~~~~~~~aPE~~~------~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~  215 (257)
                      ....  .....||+.|.|||.+.      ...++.++||||+||++|||++|+.||......   ......     ....
T Consensus       160 ~~~~~~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~~~~---~~~~~i-----~~~~  231 (277)
T d1phka_         160 LDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQM---LMLRMI-----MSGN  231 (277)
T ss_dssp             CCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH---HHHHHH-----HHTC
T ss_pred             ccCCCceeeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCCCCHH---HHHHHH-----HhCC
Confidence            5432  34557889999999985      234688999999999999999999999755211   111111     1111


Q ss_pred             hhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          216 LNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       216 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ..   .+.......++++.+++.+||+.||++|| ++|+++
T Consensus       232 ~~---~~~~~~~~~s~~~~~li~~~L~~~p~~R~s~~eil~  269 (277)
T d1phka_         232 YQ---FGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA  269 (277)
T ss_dssp             CC---CCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             CC---CCCcccccCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence            00   01122234567899999999999999999 999975

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-44  Score=299.25  Aligned_cols=235  Identities=20%  Similarity=0.195  Sum_probs=176.2

Q ss_pred             ccccceeeecccCCC--------CCeeeccch---hhhHHHHhHhhhccccccc-cCCceeeeceeeeecCceeEEEeec
Q 044568            4 TKLSNFYRSSFNARN--------SPWISRVSW---TADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~--------~~~i~~~~~---~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      +.|+.||+++....+        .+++|...-   .++.+.+ ..... .+.++ +|+||+++.+.+...+..++|||||
T Consensus        24 G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~-~~e~~-~l~~~~~HpnIv~~~~~~~~~~~~~~v~e~~  101 (299)
T d1fgka_          24 GAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDL-ISEME-MMKMIGKHKNIINLLGACTQDGPLYVIVEYA  101 (299)
T ss_dssp             ----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHH-HHHHH-HHHHHCCCTTBCCEEEEECSSSSCEEEECCC
T ss_pred             cCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHH-HHHHH-HHHHhcCCCeEEecccccccCCeEEEEEEcc
Confidence            578999999875554        356776532   1111111 01111 22244 7999999999999999999999999


Q ss_pred             CCCCHHHHHhccC--------------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEee
Q 044568           72 RNGSLTDIIFCSA--------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILD  137 (257)
Q Consensus        72 ~~gsL~~~l~~~~--------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d  137 (257)
                      ++|+|.++|....              ...+++.+++.++.|++.||.|||++   +++||||||+|||++.++.+||+|
T Consensus       102 ~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~---~ivHrDiKp~NiLl~~~~~~kl~d  178 (299)
T d1fgka_         102 SKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKIAD  178 (299)
T ss_dssp             TTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECS
T ss_pred             CCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhC---CEEeeeecccceeecCCCCeEecc
Confidence            9999999997432              24689999999999999999999999   999999999999999999999999


Q ss_pred             ecccccCCCC-----cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHh-cCCCCCcCCCChhhHHHHHHHHHhh
Q 044568          138 FGLAKLPNED-----FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETIC-CRKNMEIDASKPEEIILTNWVYKCF  211 (257)
Q Consensus       138 fg~~~~~~~~-----~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~-g~~pf~~~~~~~~~~~~~~~~~~~~  211 (257)
                      ||++......     .....+++.|+|||.+.++.|+.++||||||+++|||++ |..||.....   .... ..     
T Consensus       179 fg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~~~---~~~~-~~-----  249 (299)
T d1fgka_         179 FGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPV---EELF-KL-----  249 (299)
T ss_dssp             TTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH---HHHH-HH-----
T ss_pred             chhhccccccccccccccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCCCH---HHHH-HH-----
Confidence            9998753322     234567788999999999999999999999999999998 6888864411   1111 10     


Q ss_pred             hhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          212 INRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                          +.... ....+...++.+.+|+.+||+.||++|| +.||++.|
T Consensus       250 ----i~~~~-~~~~p~~~~~~l~~li~~cl~~dP~~Rps~~eil~~L  291 (299)
T d1fgka_         250 ----LKEGH-RMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDL  291 (299)
T ss_dssp             ----HHTTC-CCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             ----HHcCC-CCCCCccchHHHHHHHHHHccCCHhHCcCHHHHHHHH
Confidence                11100 1133445567899999999999999999 99999875

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=9.2e-44  Score=296.08  Aligned_cols=228  Identities=16%  Similarity=0.211  Sum_probs=172.9

Q ss_pred             ccccceeeecc-cCCCCCeeeccc------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCc----eeE
Q 044568            4 TKLSNFYRSSF-NARNSPWISRVS------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSV----SGK   66 (257)
Q Consensus         4 ~~~~~~y~~~~-~~~~~~~i~~~~------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~----~~l   66 (257)
                      +.++.||+++. .+++.+++|.+.            +.+|++.+.         ++.|+||+++.+.+...+.    .+|
T Consensus        18 G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~---------~~~hpniv~~~~~~~~~~~~~~~~~l   88 (277)
T d1o6ya_          18 GGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAA---------ALNHPAIVAVYDTGEAETPAGPLPYI   88 (277)
T ss_dssp             CSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHH---------TCCCTTBCCEEEEEEEECSSSEEEEE
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHH---------hcCCCCCCcccceeeeccCCCceEEE
Confidence            67899999985 456678888653            233444444         8899999999999887553    789


Q ss_pred             EEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC
Q 044568           67 IERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE  146 (257)
Q Consensus        67 V~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~  146 (257)
                      |||||++|+|.+++.  ....+++.+++.++.|++.||.|||++   +|+||||||+||+++.++..+++|||.+.....
T Consensus        89 vmE~~~g~~L~~~~~--~~~~l~~~~~~~i~~qi~~al~~lH~~---~iiHrDiKP~NIll~~~~~~~l~d~~~~~~~~~  163 (277)
T d1o6ya_          89 VMEYVDGVTLRDIVH--TEGPMTPKRAIEVIADACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFGIARAIAD  163 (277)
T ss_dssp             EEECCCEEEHHHHHH--HHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTSCEEECCCTTCEECC-
T ss_pred             EEECCCCCEehhhhc--ccCCCCHHHHHHHHHHHHHHHHHHHhC---CccCccccCcccccCccccceeehhhhhhhhcc
Confidence            999999999999997  456799999999999999999999999   999999999999999999999999998764322


Q ss_pred             C------cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhh
Q 044568          147 D------FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLV  220 (257)
Q Consensus       147 ~------~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (257)
                      .      .....||+.|+|||.+.+..++.++||||+||++|||+||+.||......  .... ..    ...    ...
T Consensus       164 ~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~--~~~~-~~----~~~----~~~  232 (277)
T d1o6ya_         164 SGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPV--SVAY-QH----VRE----DPI  232 (277)
T ss_dssp             ---------------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHH--HHHH-HH----HHC----CCC
T ss_pred             ccccccccccccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCCCcCHH--HHHH-HH----Hhc----CCC
Confidence            2      24457899999999999989999999999999999999999999754211  1110 00    000    000


Q ss_pred             cCCCCCHHHHHHHHHHHHHcccCCCCCCC--hHHHHHh
Q 044568          221 RGTKVDKKNLENLVKVGLWCVQDEPALRP--MKCAVMM  256 (257)
Q Consensus       221 ~~~~~~~~~~~~l~~l~~~cl~~~p~~RP--~~ei~~~  256 (257)
                      .+.......++.+.+++.+||+.||.+||  ++|+++.
T Consensus       233 ~~~~~~~~~s~~l~~li~~~L~~dp~~R~~sa~~l~~~  270 (277)
T d1o6ya_         233 PPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRAD  270 (277)
T ss_dssp             CGGGTSSSCCHHHHHHHHHHTCSSGGGSCSSHHHHHHH
T ss_pred             CCchhccCCCHHHHHHHHHHccCCHhHCHhHHHHHHHH
Confidence            01112233457899999999999999999  6777654

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-43  Score=299.90  Aligned_cols=231  Identities=17%  Similarity=0.139  Sum_probs=180.7

Q ss_pred             ccccceeeeccc-CCCCCeeeccch-----hhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHH
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVSW-----TADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLT   77 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~~-----~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~   77 (257)
                      +.|+.||+++.. +++.+++|.+.-     ....+.......- ....+.|+||+++.+.+...+..+||||||++|+|.
T Consensus        13 G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~-l~~~~~hp~Iv~~~~~~~~~~~~yivmEy~~~g~L~   91 (320)
T d1xjda_          13 GSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRV-LSLAWEHPFLTHMFCTFQTKENLFFVMEYLNGGDLM   91 (320)
T ss_dssp             CSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHH-HHHHTTCTTBCCEEEEEECSSEEEEEEECCTTCBHH
T ss_pred             CCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHH-HHHhCCCCcEEEEEEEEccCCceeEEEeecCCCcHH
Confidence            578999999965 456668887642     1111111111000 112578999999999999999999999999999999


Q ss_pred             HHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC---CcccccCC
Q 044568           78 DIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE---DFVIDKRD  154 (257)
Q Consensus        78 ~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~---~~~~~~~~  154 (257)
                      +++.  ....+++.++..++.|++.||.|||++   +++||||||+|||++.++.+||+|||+++....   ......||
T Consensus        92 ~~i~--~~~~~~e~~~~~~~~qi~~al~ylH~~---~iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt  166 (320)
T d1xjda_          92 YHIQ--SCHKFDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGT  166 (320)
T ss_dssp             HHHH--HHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSC
T ss_pred             HHhh--ccCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCcccceeecCCCceeccccchhhhcccccccccccCCC
Confidence            9997  456789999999999999999999999   999999999999999999999999999875432   23456789


Q ss_pred             CCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCCCCCHHHHHHHH
Q 044568          155 KGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGTKVDKKNLENLV  234 (257)
Q Consensus       155 ~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  234 (257)
                      +.|+|||.+.+..++.++||||+||++|||++|+.||.+...   .......            ......++...++.+.
T Consensus       167 ~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~~~---~~~~~~i------------~~~~~~~p~~~s~~~~  231 (320)
T d1xjda_         167 PDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDE---EELFHSI------------RMDNPFYPRWLEKEAK  231 (320)
T ss_dssp             GGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHH------------HHCCCCCCTTSCHHHH
T ss_pred             CCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCCCH---HHHHHHH------------HcCCCCCCccCCHHHH
Confidence            999999999999999999999999999999999999975521   1111110            0111233445567799


Q ss_pred             HHHHHcccCCCCCCC-hH-HHHH
Q 044568          235 KVGLWCVQDEPALRP-MK-CAVM  255 (257)
Q Consensus       235 ~l~~~cl~~~p~~RP-~~-ei~~  255 (257)
                      +|+.+||+.||.+|| +. |+++
T Consensus       232 dli~~~L~~dP~~R~s~~~~l~~  254 (320)
T d1xjda_         232 DLLVKLFVREPEKRLGVRGDIRQ  254 (320)
T ss_dssp             HHHHHHSCSSGGGSBTTBSCGGG
T ss_pred             HHHHHhcccCCCCCcCHHHHHHh
Confidence            999999999999999 85 6653

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-43  Score=297.17  Aligned_cols=223  Identities=17%  Similarity=0.185  Sum_probs=180.9

Q ss_pred             ccccceeeeccc-CCCCCeeeccc--------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCC
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS--------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNG   74 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~g   74 (257)
                      +.|+.||++... ++..+++|.+.        +.+|++.+.         .++|+||+++.+.+...+..+||||||+||
T Consensus        16 G~fg~Vy~~~~~~~~~~~AiK~i~~~~~~~~~~~~Ei~il~---------~l~HpnIv~~~~~~~~~~~~~lvmE~~~gg   86 (321)
T d1tkia_          16 GEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILN---------IARHRNILHLHESFESMEELVMIFEFISGL   86 (321)
T ss_dssp             CSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHH---------HSCCTTBCCEEEEEEETTEEEEEECCCCCC
T ss_pred             CCCeEEEEEEECCCCcEEEEEEEcCCcccHHHHHHHHHHHH---------hCCCCCCCeEEEEEEECCEEEEEEecCCCC
Confidence            579999999865 45567888654        335555554         888999999999999999999999999999


Q ss_pred             CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCC--CCceEEeeecccccCCCC--ccc
Q 044568           75 SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE--FWTAKILDFGLAKLPNED--FVI  150 (257)
Q Consensus        75 sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~--~~~~kl~dfg~~~~~~~~--~~~  150 (257)
                      +|.+++.. ....+++.++..++.|++.||.|||++   +|+||||||+|||++.  ...+|++|||++......  ...
T Consensus        87 ~L~~~i~~-~~~~l~e~~~~~i~~qi~~al~yLH~~---~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~~~~~~  162 (321)
T d1tkia_          87 DIFERINT-SAFELNEREIVSYVHQVCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRL  162 (321)
T ss_dssp             BHHHHHTS-SSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCEEEE
T ss_pred             cHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHc---CCCcccccccceeecCCCceEEEEcccchhhccccCCcccc
Confidence            99999975 445799999999999999999999999   9999999999999984  458999999998764432  355


Q ss_pred             ccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhcCC-CCCH--
Q 044568          151 DKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVRGT-KVDK--  227 (257)
Q Consensus       151 ~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--  227 (257)
                      ..+++.|+|||.+.+..++.++||||+||++|+|++|..||......   .....             ..... .++.  
T Consensus       163 ~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~~~---~~~~~-------------i~~~~~~~~~~~  226 (321)
T d1tkia_         163 LFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQ---QIIEN-------------IMNAEYTFDEEA  226 (321)
T ss_dssp             EESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHH---HHHHH-------------HHHTCCCCCHHH
T ss_pred             cccccccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCCCCCHH---HHHHH-------------HHhCCCCCChhh
Confidence            57889999999999999999999999999999999999999765211   11111             11111 1111  


Q ss_pred             --HHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          228 --KNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       228 --~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                        ..++.+.+|+.+||+.||++|| ++|+++
T Consensus       227 ~~~~s~~~~~li~~~L~~dp~~R~s~~eil~  257 (321)
T d1tkia_         227 FKEISIEAMDFVDRLLVKERKSRMTASEALQ  257 (321)
T ss_dssp             HTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             ccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence              2346788999999999999999 999975

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-43  Score=295.71  Aligned_cols=237  Identities=18%  Similarity=0.169  Sum_probs=168.6

Q ss_pred             cccccceeeecccCC------CCCeeeccch---hhhHHHHhHhhhcccccc-ccCCceeeeceeeeec-CceeEEEeec
Q 044568            3 CTKLSNFYRSSFNAR------NSPWISRVSW---TADIEVLSVAMRGSKCTR-IRGGLLLNVPVRAKLT-SVSGKIERPV   71 (257)
Q Consensus         3 ~~~~~~~y~~~~~~~------~~~~i~~~~~---~~~~~~~~~~~~~~~~~~-~~h~~i~~~~~~~~~~-~~~~lV~E~~   71 (257)
                      .+.|+.||+|+....      ..+++|.+..   ..+.+.+. .... .+.+ ..|+|++.+.+.+... ...++|||||
T Consensus        23 ~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~-~e~~-~l~~~~~h~~iv~~~~~~~~~~~~~~iv~E~~  100 (299)
T d1ywna1          23 RGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALM-SELK-ILIHIGHHLNVVNLLGACTKPGGPLMVIVEFC  100 (299)
T ss_dssp             ECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHH-HHHH-HHHHHCCCTTBCCEEEEECSTTSCCEEEEECC
T ss_pred             ecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHH-HHHH-HHHhhcCCCeEEEeeeeeccCCCeEEEEEEec
Confidence            468999999986443      3467776542   11111111 0001 1113 3588999998887654 4689999999


Q ss_pred             CCCCHHHHHhccC--------------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEee
Q 044568           72 RNGSLTDIIFCSA--------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILD  137 (257)
Q Consensus        72 ~~gsL~~~l~~~~--------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~d  137 (257)
                      ++|+|.+++....              ...+++.++..++.|++.||.|||++   +|+||||||+|||++.++.+||+|
T Consensus       101 ~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~---~ivHrDlKp~NILl~~~~~~Kl~D  177 (299)
T d1ywna1         101 KFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICD  177 (299)
T ss_dssp             TTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECGGGCEEECC
T ss_pred             CCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhC---CCcCCcCCccceeECCCCcEEEcc
Confidence            9999999997421              24589999999999999999999999   999999999999999999999999


Q ss_pred             ecccccCCCCc-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcC-CCCCcCCCChhhHHHHHHHHHhh
Q 044568          138 FGLAKLPNEDF-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCR-KNMEIDASKPEEIILTNWVYKCF  211 (257)
Q Consensus       138 fg~~~~~~~~~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~-~pf~~~~~~~~~~~~~~~~~~~~  211 (257)
                      ||+++......     ....||+.|+|||.+.+..++.++|||||||++|||++|. .||........   +....    
T Consensus       178 FGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~~~~~---~~~~~----  250 (299)
T d1ywna1         178 FGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE---FCRRL----  250 (299)
T ss_dssp             ------CCSCTTSCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHH---HHHHH----
T ss_pred             CcchhhccccccccccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCCCHHHH---HHHHH----
Confidence            99997543221     3346788999999999999999999999999999999865 56764422221   11100    


Q ss_pred             hhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          212 INRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                           .... ....+...++.+.+++.+||+.||++|| ++|+++.|
T Consensus       251 -----~~~~-~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~eil~~L  291 (299)
T d1ywna1         251 -----KEGT-RMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHL  291 (299)
T ss_dssp             -----HHTC-CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             -----hcCC-CCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence                 0100 1133445667899999999999999999 99999864

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-43  Score=293.70  Aligned_cols=235  Identities=19%  Similarity=0.137  Sum_probs=178.8

Q ss_pred             ccccceeeecccC-CCCCeeeccc--------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEE
Q 044568            4 TKLSNFYRSSFNA-RNSPWISRVS--------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIE   68 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~~~~i~~~~--------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~   68 (257)
                      +.|+.||+++... ++.+|+|.+.              +.+|++.+.         ++.|+||+++.+.+...+..+|||
T Consensus         9 G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~---------~l~hpnIv~~~~~~~~~~~~~ivm   79 (299)
T d1ua2a_           9 GQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQ---------ELSHPNIIGLLDAFGHKSNISLVF   79 (299)
T ss_dssp             ETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHH---------HCCCTTBCCEEEEECCTTCCEEEE
T ss_pred             CcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHH---------hCCCCCEeEEEeeeccCCceeehh
Confidence            5789999999755 5667888654              234555555         888999999999999999999999


Q ss_pred             eecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC-
Q 044568           69 RPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED-  147 (257)
Q Consensus        69 E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~-  147 (257)
                      ||+.++++..+..  ....+++.++..++.|++.||.|||++   +++||||||+|||++.++.+||+|||++...... 
T Consensus        80 E~~~~~~~~~~~~--~~~~l~~~~~~~~~~qil~aL~~lH~~---~iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~~  154 (299)
T d1ua2a_          80 DFMETDLEVIIKD--NSLVLTPSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPN  154 (299)
T ss_dssp             ECCSEEHHHHHTT--CCSSCCSSHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCC
T ss_pred             hhhcchHHhhhhh--cccCCCHHHHHHHHHHHHHHHHHhhcc---ceecccCCcceEEecCCCccccccCccccccCCCc
Confidence            9999877776664  567799999999999999999999999   9999999999999999999999999999764432 


Q ss_pred             --cccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhh--hhhhhhhc-
Q 044568          148 --FVIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFIN--RELNKLVR-  221 (257)
Q Consensus       148 --~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-  221 (257)
                        .....+|+.|+|||.+... .++.++||||+||++|||++|..||......   ..+..........  ........ 
T Consensus       155 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~---~~l~~i~~~~~~~~~~~~~~~~~~  231 (299)
T d1ua2a_         155 RAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDL---DQLTRIFETLGTPTEEQWPDMCSL  231 (299)
T ss_dssp             CCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHH---HHHHHHHHHHCCCCTTTSSSTTSS
T ss_pred             ccccceecChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCCCCHH---HHHHHHHHhcCCCChhhccchhcc
Confidence              2345689999999998755 5799999999999999999999999755211   1111111110000  00000000 


Q ss_pred             -------CC-CC-----CHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          222 -------GT-KV-----DKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       222 -------~~-~~-----~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                             .. ..     .....+.+.+|+.+||+.||++|| ++|+++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~dP~~R~sa~e~L~  279 (299)
T d1ua2a_         232 PDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALK  279 (299)
T ss_dssp             TTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred             chhhhhccCCCCChHHhcccCCHHHHHHHHHHccCChhhCcCHHHHhC
Confidence                   00 00     112346789999999999999999 999986

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-43  Score=296.47  Aligned_cols=226  Identities=19%  Similarity=0.262  Sum_probs=180.6

Q ss_pred             ccccceeeeccc------CCCCCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEE
Q 044568            4 TKLSNFYRSSFN------ARNSPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKI   67 (257)
Q Consensus         4 ~~~~~~y~~~~~------~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV   67 (257)
                      +.|+.||+|.+.      .+..+|||.+.          |.+|++.+.         ++.|+||+++.+.+...+..++|
T Consensus        31 G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~---------~l~h~nIv~~~~~~~~~~~~~lv  101 (308)
T d1p4oa_          31 GSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMK---------EFNCHHVVRLLGVVSQGQPTLVI  101 (308)
T ss_dssp             CSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGG---------GCCCTTBCCEEEEECSSSSCEEE
T ss_pred             CCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHH---------HcCCCCEeeeeeEEecCCceeEE
Confidence            679999999864      24567888765          234444444         88999999999999999999999


Q ss_pred             EeecCCCCHHHHHhcc--------CCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeec
Q 044568           68 ERPVRNGSLTDIIFCS--------AERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFG  139 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~--------~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg  139 (257)
                      ||||++|+|.+++...        ....+++..+..++.|++.||.|||++   +|+||||||+|||++.++++||+|||
T Consensus       102 ~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~---~ivHrDlk~~NiLld~~~~~Kl~DFG  178 (308)
T d1p4oa_         102 MELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIGDFG  178 (308)
T ss_dssp             EECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCSGGGEEECTTCCEEECCTT
T ss_pred             EeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhC---CeeeceEcCCceeecCCceEEEeecc
Confidence            9999999999998642        224578999999999999999999999   99999999999999999999999999


Q ss_pred             ccccCCCCc-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcC-CCCCcCCCChhhHHHHHHHHHhhhh
Q 044568          140 LAKLPNEDF-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCR-KNMEIDASKPEEIILTNWVYKCFIN  213 (257)
Q Consensus       140 ~~~~~~~~~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~-~pf~~~~~~~~~~~~~~~~~~~~~~  213 (257)
                      +++......     ....+|+.|+|||.+.+..++.++||||||+++|||+||. .||......   ...          
T Consensus       179 la~~~~~~~~~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~~~~~---~~~----------  245 (308)
T d1p4oa_         179 MTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNE---QVL----------  245 (308)
T ss_dssp             CCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHH---HHH----------
T ss_pred             cceeccCCcceeeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCCCCCHH---HHH----------
Confidence            987543322     3335678899999999999999999999999999999985 666533111   001          


Q ss_pred             hhhhhhhcCC--CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          214 RELNKLVRGT--KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       214 ~~~~~~~~~~--~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                         ..+.++.  ..+...++.+.+++.+||+.||.+|| ++||++.|
T Consensus       246 ---~~i~~~~~~~~p~~~~~~l~~li~~cl~~~P~~RPs~~~il~~L  289 (308)
T d1p4oa_         246 ---RFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSI  289 (308)
T ss_dssp             ---HHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             ---HHHHhCCCCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence               1111111  23455667899999999999999999 99999864

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-43  Score=296.07  Aligned_cols=229  Identities=19%  Similarity=0.235  Sum_probs=177.7

Q ss_pred             ccccceeeeccc------CCCCCeeeccc----------hhhhHHHHhHhhhccccccc-cCCceeeeceeeeecCceeE
Q 044568            4 TKLSNFYRSSFN------ARNSPWISRVS----------WTADIEVLSVAMRGSKCTRI-RGGLLLNVPVRAKLTSVSGK   66 (257)
Q Consensus         4 ~~~~~~y~~~~~------~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~-~h~~i~~~~~~~~~~~~~~l   66 (257)
                      +.|+.||+|++.      ++..+++|.+.          +.+|++.+.         ++ .|+||+++.+.+...+..+|
T Consensus        34 G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~---------~l~~HpnIv~~~g~~~~~~~~~l  104 (311)
T d1t46a_          34 GAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLS---------YLGNHMNIVNLLGACTIGGPTLV  104 (311)
T ss_dssp             CSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHH---------HHCCCTTBCCEEEEECSSSSCEE
T ss_pred             cCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHH---------hccCCCCEEEEEEEEeeCCEEEE
Confidence            679999999753      33356777653          223333333         45 59999999999999999999


Q ss_pred             EEeecCCCCHHHHHhccC----------------CCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCC
Q 044568           67 IERPVRNGSLTDIIFCSA----------------ERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEF  130 (257)
Q Consensus        67 V~E~~~~gsL~~~l~~~~----------------~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~  130 (257)
                      |||||++|+|.++++...                ...+++.++..++.|++.|+.|||++   +++||||||+||+++.+
T Consensus       105 vmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~---~ivHrDLKp~NIl~~~~  181 (311)
T d1t46a_         105 ITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNILLTHG  181 (311)
T ss_dssp             EEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEETT
T ss_pred             EEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---Ceeeccccccccccccc
Confidence            999999999999997532                23589999999999999999999999   99999999999999999


Q ss_pred             CceEEeeecccccCCCCc-----ccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhc-CCCCCcCCCChhhHHHH
Q 044568          131 WTAKILDFGLAKLPNEDF-----VIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICC-RKNMEIDASKPEEIILT  204 (257)
Q Consensus       131 ~~~kl~dfg~~~~~~~~~-----~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g-~~pf~~~~~~~~~~~~~  204 (257)
                      +.++++|||.++......     ....+|+.|+|||.+.+..++.++||||||+++|||+|+ .+||........   +.
T Consensus       182 ~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~~~~~~---~~  258 (311)
T d1t46a_         182 RITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSK---FY  258 (311)
T ss_dssp             TEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHH---HH
T ss_pred             CcccccccchheeccCCCcceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCCCCHHHH---HH
Confidence            999999999998654322     234667889999999999999999999999999999995 555544322211   11


Q ss_pred             HHHHHhhhhhhhhhhhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          205 NWVYKCFINRELNKLVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                      .....         -. ....+...++.+.+|+.+||+.||++|| |+||+++|
T Consensus       259 ~~i~~---------~~-~~~~~~~~~~~l~~Li~~cl~~dP~~RPs~~~il~~L  302 (311)
T d1t46a_         259 KMIKE---------GF-RMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLI  302 (311)
T ss_dssp             HHHHH---------TC-CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             HHHhc---------CC-CCCCcccccHHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence            11110         01 1123344567899999999999999999 99999875

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-42  Score=288.29  Aligned_cols=217  Identities=20%  Similarity=0.224  Sum_probs=176.0

Q ss_pred             ccccceeeeccc-CCCCCeeeccc---------------hhhhHHHHhHhhhccccccc--cCCceeeeceeeeecCcee
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS---------------WTADIEVLSVAMRGSKCTRI--RGGLLLNVPVRAKLTSVSG   65 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~---------------~~~~~~~~~~~~~~~~~~~~--~h~~i~~~~~~~~~~~~~~   65 (257)
                      +.|+.||++... ++..+++|.+.               +.+|++.+.         ++  .|+||+++.+.+...+..+
T Consensus        15 G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~---------~l~~~h~nIv~~~~~~~~~~~~~   85 (273)
T d1xwsa_          15 GGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLK---------KVSSGFSGVIRLLDWFERPDSFV   85 (273)
T ss_dssp             ETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHH---------HHCSSSCSBCCEEEEEECSSEEE
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHH---------HhccCCCCccEEEEEEeeCCeEE
Confidence            578999999965 56677888643               345666665         33  4999999999999999999


Q ss_pred             EEEeecCC-CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCC-CCceEEeeeccccc
Q 044568           66 KIERPVRN-GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE-FWTAKILDFGLAKL  143 (257)
Q Consensus        66 lV~E~~~~-gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~-~~~~kl~dfg~~~~  143 (257)
                      +||||+.+ +++.+++.  ....+++.++..++.|++.||.|||++   +|+||||||+||+++. ++.+||+|||++..
T Consensus        86 lv~e~~~~~~~l~~~~~--~~~~l~e~~~~~~~~qi~~al~~lH~~---~iiHrDiKp~NIll~~~~~~vkl~DFG~a~~  160 (273)
T d1xwsa_          86 LILERPEPVQDLFDFIT--ERGALQEELARSFFWQVLEAVRHCHNC---GVLHRDIKDENILIDLNRGELKLIDFGSGAL  160 (273)
T ss_dssp             EEEECCSSEEEHHHHHH--HHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTTCEE
T ss_pred             EEEEeccCcchHHHHHh--ccCCCCHHHHHHHHHHHHHHHHHHHHC---CCccccCcccceEEecCCCeEEECcccccee
Confidence            99999975 68888887  456799999999999999999999999   9999999999999985 57999999999976


Q ss_pred             CCCC-cccccCCCCccCcccccCCCC-CccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhhc
Q 044568          144 PNED-FVIDKRDKGYMAPECYKRTPI-SVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLVR  221 (257)
Q Consensus       144 ~~~~-~~~~~~~~~~~aPE~~~~~~~-~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (257)
                      .... .....||+.|+|||.+.+..+ +.++||||+||++|||++|+.||...    ..+.                 -.
T Consensus       161 ~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~----~~i~-----------------~~  219 (273)
T d1xwsa_         161 LKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHD----EEII-----------------RG  219 (273)
T ss_dssp             CCSSCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH----HHHH-----------------HC
T ss_pred             cccccccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCCCc----hHHh-----------------hc
Confidence            4433 355678999999999987765 57789999999999999999999643    1000                 00


Q ss_pred             CCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          222 GTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       222 ~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ...++...++++.+++.+||+.||++|| ++|+++
T Consensus       220 ~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~  254 (273)
T d1xwsa_         220 QVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQN  254 (273)
T ss_dssp             CCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             ccCCCCCCCHHHHHHHHHHccCCHhHCcCHHHHhc
Confidence            1122334457789999999999999999 999975

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-41  Score=287.07  Aligned_cols=239  Identities=17%  Similarity=0.142  Sum_probs=177.9

Q ss_pred             ccccceeeecccC-CC-CCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeee-----cCcee
Q 044568            4 TKLSNFYRSSFNA-RN-SPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL-----TSVSG   65 (257)
Q Consensus         4 ~~~~~~y~~~~~~-~~-~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~-----~~~~~   65 (257)
                      +.++.||++.... ++ .+|+|.+.           +.+|++.+.      .+....|+||+++.+.+..     ....+
T Consensus        18 G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~------~l~~~~HpnIv~~~~~~~~~~~~~~~~~~   91 (305)
T d1blxa_          18 GAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLR------HLETFEHPNVVRLFDVCTVSRTDRETKLT   91 (305)
T ss_dssp             ETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHH------HHHHTCCTTBCCEEEEEEEEECSSEEEEE
T ss_pred             ccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHH------HHhhcCCCCcceeeeeecccccccCceEE
Confidence            5689999998643 33 46787642           234555554      3335679999999988753     34778


Q ss_pred             EEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC
Q 044568           66 KIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN  145 (257)
Q Consensus        66 lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~  145 (257)
                      ++|||+.+|++...... ....+++..++.++.|++.||.|||++   +|+||||||+|||++..+.+|++|||++....
T Consensus        92 ~~~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~qi~~aL~yLH~~---~ivHrDiKp~NILi~~~~~~kl~dfg~~~~~~  167 (305)
T d1blxa_          92 LVFEHVDQDLTTYLDKV-PEPGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLADFGLARIYS  167 (305)
T ss_dssp             EEEECCSCBHHHHHHHS-CTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECSCCSCCCCC
T ss_pred             EEEEeccCCchhhhhhc-cCCCCCHHHHHHHHHHHHHHHHHHHhC---CEEecCCCccEEEEcCCCCeeecchhhhhhhc
Confidence            99999988776655443 677899999999999999999999999   99999999999999999999999999987543


Q ss_pred             C--CcccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhh--h-----
Q 044568          146 E--DFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRE--L-----  216 (257)
Q Consensus       146 ~--~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~--~-----  216 (257)
                      .  ......||+.|+|||.+.+.+|+.++||||+||++|||++|+.||......   ..+............  +     
T Consensus       168 ~~~~~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~  244 (305)
T d1blxa_         168 FQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDV---DQLGKILDVIGLPGEEDWPRDVA  244 (305)
T ss_dssp             GGGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH---HHHHHHHHHHCCCCGGGSCTTCS
T ss_pred             ccccCCCcccChhhcCcchhcCCCCChhehhhchHHHHHHHHHCCCCCCCCCHH---HHHHHHHHhhCCCchhccccccc
Confidence            3  235668899999999999999999999999999999999999999755211   111111111000000  0     


Q ss_pred             ---hhhhcCC-----CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          217 ---NKLVRGT-----KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       217 ---~~~~~~~-----~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                         .......     .......+.+.+|+.+||+.||++|| ++|+++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~sa~e~L~  292 (305)
T d1blxa_         245 LPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS  292 (305)
T ss_dssp             SCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             chhhhhccccccchhhccccCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence               0000000     12223456788999999999999999 999975

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-41  Score=285.61  Aligned_cols=236  Identities=16%  Similarity=0.139  Sum_probs=178.0

Q ss_pred             ccccceeeecc-cCCCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            4 TKLSNFYRSSF-NARNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~-~~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      +.++.||+++. .+++.+|+|.+.           +.+|++++.         ++.|+||+++.+.+...+..++||||+
T Consensus        13 G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~---------~l~Hp~Iv~~~~~~~~~~~~~iv~e~~   83 (298)
T d1gz8a_          13 GTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLK---------ELNHPNIVKLLDVIHTENKLYLVFEFL   83 (298)
T ss_dssp             CSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHT---------TCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             CcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHH---------hCCCCcEEEeccccccccceeEEEeec
Confidence            57999999996 456778888753           234555555         888999999999999999999999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC---Cc
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE---DF  148 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~---~~  148 (257)
                      .+ ++.+.+.......+++.++..++.|++.||.|||++   +|+||||||+||+++.++.+|++|||.++....   ..
T Consensus        84 ~~-~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~---~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~~~~~  159 (298)
T d1gz8a_          84 HQ-DLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTY  159 (298)
T ss_dssp             SE-EHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSTTHHHHHCCCSBCT
T ss_pred             CC-chhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcC---CEEccccCchheeecccCcceeccCCcceeccCCcccc
Confidence            75 555555543677899999999999999999999999   999999999999999999999999999875432   23


Q ss_pred             ccccCCCCccCcccccCCC-CCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhh-h----hhhhhhc-
Q 044568          149 VIDKRDKGYMAPECYKRTP-ISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFIN-R----ELNKLVR-  221 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~~~-~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~-  221 (257)
                      ....+|+.|+|||.+.... ++.++||||+||++|+|++|+.||......   ..+.......... .    ......+ 
T Consensus       160 ~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~  236 (298)
T d1gz8a_         160 THEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEI---DQLFRIFRTLGTPDEVVWPGVTSMPDY  236 (298)
T ss_dssp             TCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH---HHHHHHHHHHCCCCTTTSTTGGGSTTC
T ss_pred             eeecccceeeehhhhccccCCCccccccccchhhhHHhhCCCCCCCCCHH---HHHHHHHHhcCCCchhhcccccccccc
Confidence            4557899999999987765 478999999999999999999999754211   1111111000000 0    0000000 


Q ss_pred             -----CC-CC-----CHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          222 -----GT-KV-----DKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       222 -----~~-~~-----~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                           .. ..     .....+.+.+++.+||+.||++|| ++|+++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~t~~ell~  282 (298)
T d1gz8a_         237 KPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALA  282 (298)
T ss_dssp             CTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             ccccccccccchhhhccCCCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence                 00 00     112236789999999999999999 999975

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=1.5e-41  Score=283.77  Aligned_cols=235  Identities=17%  Similarity=0.143  Sum_probs=178.6

Q ss_pred             ccccceeeecccCCCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecC
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVR   72 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~   72 (257)
                      +.|+.||+++..+++.+|+|...           +.+|++.+.         ++.|+||+++.+.+...+..+++|||+.
T Consensus        13 G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~---------~l~hpnIv~~~~~~~~~~~~~i~~e~~~   83 (286)
T d1ob3a_          13 GTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILK---------ELKHSNIVKLYDVIHTKKRLVLVFEHLD   83 (286)
T ss_dssp             ETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGG---------GCCCTTBCCEEEEEECSSCEEEEEECCS
T ss_pred             CCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHH---------hCCCCcEEeeeeecccCCceeEEEEeeh
Confidence            57899999999888999998753           234454554         8899999999999999999999999998


Q ss_pred             CCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC---cc
Q 044568           73 NGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED---FV  149 (257)
Q Consensus        73 ~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~---~~  149 (257)
                      ++.+..+..  ....+++.++..++.|++.||+|||++   +|+||||||+|||++.++.+|++|||.+......   ..
T Consensus        84 ~~~~~~~~~--~~~~l~~~~~~~i~~qi~~~L~~LH~~---~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~  158 (286)
T d1ob3a_          84 QDLKKLLDV--CEGGLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYT  158 (286)
T ss_dssp             EEHHHHHHT--STTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC------
T ss_pred             hhhHHHHHh--hcCCcchhhhHHHHHHHHHHHHHhccC---cEEecCCCCceeeEcCCCCEEecccccceecccCccccc
Confidence            777666665  567899999999999999999999999   9999999999999999999999999998754332   24


Q ss_pred             cccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhh-----hhhhhhh---
Q 044568          150 IDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFIN-----RELNKLV---  220 (257)
Q Consensus       150 ~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~---  220 (257)
                      ...+++.|+|||.+.+. .++.++||||+||++|||++|+.||......   ....+........     .......   
T Consensus       159 ~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~  235 (286)
T d1ob3a_         159 HEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEA---DQLMRIFRILGTPNSKNWPNVTELPKYD  235 (286)
T ss_dssp             ---CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH---HHHHHHHHHHCCCCTTTSTTGGGSTTCC
T ss_pred             eecccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCCCHH---HHHHHHHHhhCCCChhhccchhhhhhcc
Confidence            44678889999998765 4689999999999999999999999754211   1111111000000     0000000   


Q ss_pred             ---cC------CCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          221 ---RG------TKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       221 ---~~------~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                         ..      ........+.+.+++.+||+.||++|| ++|+++
T Consensus       236 ~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~s~~ell~  280 (286)
T d1ob3a_         236 PNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE  280 (286)
T ss_dssp             TTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             cccccccCcchhhhcccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence               00      011223346789999999999999999 999975

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.4e-39  Score=273.44  Aligned_cols=234  Identities=16%  Similarity=0.121  Sum_probs=172.5

Q ss_pred             cccccceeeeccc-CCCCCeeeccc-------hhhhHHHHhHhhhccccccccCCcee-eeceeeeecCceeEEEeecCC
Q 044568            3 CTKLSNFYRSSFN-ARNSPWISRVS-------WTADIEVLSVAMRGSKCTRIRGGLLL-NVPVRAKLTSVSGKIERPVRN   73 (257)
Q Consensus         3 ~~~~~~~y~~~~~-~~~~~~i~~~~-------~~~~~~~~~~~~~~~~~~~~~h~~i~-~~~~~~~~~~~~~lV~E~~~~   73 (257)
                      .+.|+.||+|+.. +++.+|+|...       +..|++.+.         .+.|++++ .+...+...+..++||||++ 
T Consensus        17 ~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~E~~i~~---------~l~~~~~i~~~~~~~~~~~~~~ivme~~~-   86 (299)
T d1ckia_          17 SGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYK---------MMQGGVGIPTIRWCGAEGDYNVMVMELLG-   86 (299)
T ss_dssp             ECSSSEEEEEEETTTTEEEEEEEEESCTTSCCHHHHHHHHH---------HSTTSTTCCCEEEEEEETTEEEEEEECCC-
T ss_pred             eCCCcEEEEEEECCCCCEEEEEEEchhccCHHHHHHHHHHH---------HccCCCcccEEEEEEecCCEEEEEEEEcC-
Confidence            3679999999864 46677787532       345555555         66666655 44556677888999999994 


Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeC---CCCceEEeeecccccCCCC---
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMD---EFWTAKILDFGLAKLPNED---  147 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~---~~~~~kl~dfg~~~~~~~~---  147 (257)
                      |++.+.+.. ....+++.++..++.|++.||+|||++   +|+||||||+||++.   .+..++++|||+++.....   
T Consensus        87 ~~l~~~~~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~---~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~  162 (299)
T d1ckia_          87 PSLEDLFNF-CSRKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTH  162 (299)
T ss_dssp             CBHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCTTTC
T ss_pred             Cchhhhhhh-ccCCCcHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHhhccccccCCCceeeeeccCcceeccccccc
Confidence            577777654 567899999999999999999999999   999999999999875   3557999999999864322   


Q ss_pred             -------cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhhh
Q 044568          148 -------FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKLV  220 (257)
Q Consensus       148 -------~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (257)
                             .....||+.|+|||.+.+..++.++|||||||++|||++|+.||..............+....... ...   
T Consensus       163 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~~~~~~~~~~~-~~~---  238 (299)
T d1ckia_         163 QHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMST-PIE---  238 (299)
T ss_dssp             CBCCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-------HHHHHHHHHHS-CHH---
T ss_pred             cceeccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchHHHHHHHHHhhcccCCC-Chh---
Confidence                   134478999999999999999999999999999999999999998654333222222211111100 011   


Q ss_pred             cCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHhC
Q 044568          221 RGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMML  257 (257)
Q Consensus       221 ~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~L  257 (257)
                         ......++.+.+++..||+.+|++|| ++++.+.|
T Consensus       239 ---~~~~~~p~~~~~li~~cl~~~p~~RP~~~~i~~~l  273 (299)
T d1ckia_         239 ---VLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLF  273 (299)
T ss_dssp             ---HHTTTSCHHHHHHHHHHHHSCTTCCCCHHHHHHHH
T ss_pred             ---HhccCCCHHHHHHHHHHccCChhHCcCHHHHHHHH
Confidence               11223456789999999999999999 99887643

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=4.2e-39  Score=269.79  Aligned_cols=233  Identities=14%  Similarity=0.056  Sum_probs=178.9

Q ss_pred             cccccceeeeccc-CCCCCeeeccc-------hhhhHHHHhHhhhccccccccC-CceeeeceeeeecCceeEEEeecCC
Q 044568            3 CTKLSNFYRSSFN-ARNSPWISRVS-------WTADIEVLSVAMRGSKCTRIRG-GLLLNVPVRAKLTSVSGKIERPVRN   73 (257)
Q Consensus         3 ~~~~~~~y~~~~~-~~~~~~i~~~~-------~~~~~~~~~~~~~~~~~~~~~h-~~i~~~~~~~~~~~~~~lV~E~~~~   73 (257)
                      .+.|+.||+++.. +++.+|+|...       +.+|++.+.         .+.| ++++.+...+......++||||+ +
T Consensus        15 ~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~e~~~~~---------~l~~~~~i~~~~~~~~~~~~~~~vme~~-~   84 (293)
T d1csna_          15 EGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYK---------LLAGCTGIPNVYYFGQEGLHNVLVIDLL-G   84 (293)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEEEEECCTTSCCHHHHHHHHH---------HTTTCTTCCCEEEEEEETTEEEEEEECC-C
T ss_pred             cCCCeEEEEEEECCCCCEEEEEEEccccCcHHHHHHHHHHH---------HhcCCCCCCEEEEEeecCCccEEEEEec-C
Confidence            3679999999965 45567887543       344555444         4434 78888999999999999999999 6


Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCC-----CCceEEeeecccccCCCC-
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDE-----FWTAKILDFGLAKLPNED-  147 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~-----~~~~kl~dfg~~~~~~~~-  147 (257)
                      ++|.+++.. ....++..++..++.|++.||.|||++   +|+||||||+||+++.     .+.+||+|||+++..... 
T Consensus        85 ~~l~~~~~~-~~~~~~~~~~~~i~~q~~~~l~~lH~~---giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~  160 (293)
T d1csna_          85 PSLEDLLDL-CGRKFSVKTVAMAAKQMLARVQSIHEK---SLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPV  160 (293)
T ss_dssp             CBHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTT
T ss_pred             CCHHHHHHh-hccchhhHHHHHHHHHHHHHHHHHHHC---CceeccCCccceeecCcccccCCceEEcccceeEEcccCc
Confidence            899999875 566799999999999999999999999   9999999999999974     568999999999754321 


Q ss_pred             ---------cccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhh
Q 044568          148 ---------FVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNK  218 (257)
Q Consensus       148 ---------~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (257)
                               .....||+.|+|||.+.+..++.++||||||+++|||++|..||................... .......
T Consensus       161 ~~~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~i~~~~-~~~~~~~  239 (293)
T d1csna_         161 TKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKK-QSTPLRE  239 (293)
T ss_dssp             TCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHH-HHSCHHH
T ss_pred             cccceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccchhHHHHHHHHHhcc-CCCChHH
Confidence                     133468999999999999999999999999999999999999998654443322222111111 0111111


Q ss_pred             hhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHHh
Q 044568          219 LVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVMM  256 (257)
Q Consensus       219 ~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~~  256 (257)
                      +.      ...++++.+++..||+.+|++|| .+.+.+.
T Consensus       240 l~------~~~p~~l~~ii~~~~~~~~~~rP~y~~l~~~  272 (293)
T d1csna_         240 LC------AGFPEEFYKYMHYARNLAFDATPDYDYLQGL  272 (293)
T ss_dssp             HT------TTSCHHHHHHHHHHHHCCTTCCCCHHHHHHH
T ss_pred             hc------CCCCHHHHHHHHHHhcCCcccCcCHHHHHHH
Confidence            11      22346789999999999999999 8887664

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-39  Score=278.95  Aligned_cols=233  Identities=15%  Similarity=0.132  Sum_probs=176.3

Q ss_pred             ccccceeeeccc-CCCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecC------cee
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTS------VSG   65 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~------~~~   65 (257)
                      +.|+.||++... +++.+|+|.+.           +.+|++.+.         ++.|+|++++.+++...+      ..+
T Consensus        29 G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~---------~l~hpniv~l~~~~~~~~~~~~~~~~~   99 (346)
T d1cm8a_          29 GAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLK---------HMRHENVIGLLDVFTPDETLDDFTDFY   99 (346)
T ss_dssp             ----CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHH---------HCCBTTBCCCSEEECSCSSTTTCCCCE
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHH---------hcCCCCeeEEEEEeccCccccccceEE
Confidence            678999999964 56778888754           234444444         888999999999988655      569


Q ss_pred             EEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC
Q 044568           66 KIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN  145 (257)
Q Consensus        66 lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~  145 (257)
                      +||||+ +++|..++.   ...+++..++.++.|++.||.|||++   +|+||||||+|||++.++.+|++|||++....
T Consensus       100 lv~e~~-~~~l~~~~~---~~~l~~~~~~~~~~qi~~aL~~LH~~---~IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~~~  172 (346)
T d1cm8a_         100 LVMPFM-GTDLGKLMK---HEKLGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCELKILDFGLARQAD  172 (346)
T ss_dssp             EEEECC-SEEHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred             EEEecc-cccHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhC---CCcccccCcchhhcccccccccccccceeccC
Confidence            999999 568888875   35799999999999999999999999   99999999999999999999999999999887


Q ss_pred             CCcccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHh----------hhh-
Q 044568          146 EDFVIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKC----------FIN-  213 (257)
Q Consensus       146 ~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~----------~~~-  213 (257)
                      .......+|+.|+|||.+.+. .++.++||||+||++|||++|+.||.......   .+.......          ... 
T Consensus       173 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  249 (346)
T d1cm8a_         173 SEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLD---QLKEIMKVTGTPPAEFVQRLQSD  249 (346)
T ss_dssp             SSCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH---HHHHHHHHHCCCCHHHHHTCSCH
T ss_pred             CccccccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHCcCCCCCCChHH---HHHHHHhccCCCcHHHHhhhcch
Confidence            777788899999999998764 46899999999999999999999997552111   111111000          000 


Q ss_pred             --hhhhhhhcCC------CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          214 --RELNKLVRGT------KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       214 --~~~~~~~~~~------~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                        ..........      .......+.+.+|+.+||+.||.+|| ++|+++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~eiL~  300 (346)
T d1cm8a_         250 EAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALA  300 (346)
T ss_dssp             HHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             hhhhhhccCCcccccchHHhccCCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence              0000011100      11223346788999999999999999 999985

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-39  Score=271.53  Aligned_cols=236  Identities=16%  Similarity=0.142  Sum_probs=172.7

Q ss_pred             ccccceeeecc-cCCCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeee--------cCc
Q 044568            4 TKLSNFYRSSF-NARNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL--------TSV   63 (257)
Q Consensus         4 ~~~~~~y~~~~-~~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~--------~~~   63 (257)
                      +.|+.||+++. .+++.+|||.+.           +.+|++++.         ++.|+|++++.+.+..        ...
T Consensus        21 G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~---------~l~h~nii~~~~~~~~~~~~~~~~~~~   91 (318)
T d3blha1          21 GTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQ---------LLKHENVVNLIEICRTKASPYNRCKGS   91 (318)
T ss_dssp             CSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHH---------HCCCTTBCCEEEEEEC----------C
T ss_pred             CcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHH---------HhcCCCccceEeeeecccccccccCce
Confidence            57899999996 467778888643           345666666         8899999999988755        346


Q ss_pred             eeEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeeccccc
Q 044568           64 SGKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKL  143 (257)
Q Consensus        64 ~~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~  143 (257)
                      .++||||+.++.+.....  ....++..+++.++.|++.||.|||++   +|+||||||+|||++.++.+|++|||++..
T Consensus        92 ~~iv~e~~~~~~~~~~~~--~~~~~~~~~~~~i~~qil~~l~~lH~~---~ivHrDlKp~NILl~~~~~~kl~dfg~~~~  166 (318)
T d3blha1          92 IYLVFDFCEHDLAGLLSN--VLVKFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVLITRDGVLKLADFGLARA  166 (318)
T ss_dssp             EEEEEECCCEEHHHHHTC--TTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred             EEEEEeccCCCccchhhh--cccccccHHHHHHHHHHHHHHHHhccC---CEEecCcCchheeecCCCcEEeeecceeee
Confidence            789999998776665544  567799999999999999999999999   999999999999999999999999999865


Q ss_pred             CCCC-------cccccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhh
Q 044568          144 PNED-------FVIDKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRE  215 (257)
Q Consensus       144 ~~~~-------~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~  215 (257)
                      ....       .....+|+.|+|||.+.+. .++.++||||+||++|||++|+.||.................  .....
T Consensus       167 ~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~~~~~~~~~~~i~~~~~--~~~~~  244 (318)
T d3blha1         167 FSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCG--SITPE  244 (318)
T ss_dssp             CCC-----CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHC--CCCTT
T ss_pred             cccccccccccccceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCCCCCCHHHHHHHHHHhcC--CCChh
Confidence            4321       1334688999999998765 689999999999999999999999975421111111111100  00000


Q ss_pred             hhhhh---------c---CCCCCH-------HHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          216 LNKLV---------R---GTKVDK-------KNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       216 ~~~~~---------~---~~~~~~-------~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .....         .   ......       ...+.+.+|+.+||+.||++|| ++|+++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~sa~elL~  304 (318)
T d3blha1         245 VWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALN  304 (318)
T ss_dssp             TSTTCCCC-------CCSSCCBCHHHHHHHHHCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             hccccchhhhhhhhcccccccccchhhhccccCCHHHHHHHHHHCcCChhHCcCHHHHHc
Confidence            00000         0   000000       1134677899999999999999 999985

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-39  Score=277.89  Aligned_cols=237  Identities=17%  Similarity=0.129  Sum_probs=174.6

Q ss_pred             ccccceeeeccc-CCCCCeeeccc-----hhhhHHHHhHhhhccccccccCCceeeeceeeeec------CceeEEEeec
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS-----WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLT------SVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~-----~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~------~~~~lV~E~~   71 (257)
                      +.|+.||+++.. +++.+|||.+.     ..+|++.+.         ++.|+|++++.+++...      ...+||||||
T Consensus        31 G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~Ei~il~---------~l~h~niv~~~~~~~~~~~~~~~~~~~lv~Ey~  101 (350)
T d1q5ka_          31 GSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMR---------KLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYV  101 (350)
T ss_dssp             ETTEEEEEEEETTTCCEEEEEEEECCSSSCCHHHHHHH---------HCCCTTBCCEEEEEEEC--CCSCCEEEEEEECC
T ss_pred             CcCeEEEEEEECCCCCEEEEEEECccchHHHHHHHHHH---------hcCCCCCCcEEEEEEecCccCCceEEEEEEecc
Confidence            568999999975 46667887643     357777776         78899999999988643      2468999999


Q ss_pred             CCCCHHHHHh-ccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCC-ceEEeeecccccCC--CC
Q 044568           72 RNGSLTDIIF-CSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW-TAKILDFGLAKLPN--ED  147 (257)
Q Consensus        72 ~~gsL~~~l~-~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~-~~kl~dfg~~~~~~--~~  147 (257)
                      ++|.+..... ......+++.+++.++.|++.||+|||++   +|+||||||+|||++.++ .+||+|||++....  ..
T Consensus       102 ~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~---~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~~~~~~  178 (350)
T d1q5ka_         102 PETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF---GICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEP  178 (350)
T ss_dssp             SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTTCCEEECCCTTCEECCTTSC
T ss_pred             CCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhc---CCcccCCCcceEEEecCCCceeEecccchhhccCCcc
Confidence            8654333332 11567899999999999999999999999   999999999999999764 89999999987543  33


Q ss_pred             cccccCCCCccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhh--hhhhhhhhcC--
Q 044568          148 FVIDKRDKGYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFI--NRELNKLVRG--  222 (257)
Q Consensus       148 ~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--  222 (257)
                      .....++..|+|||.+.+ ..++.++||||+||++|||++|+.||.......   .+.........  ...+......  
T Consensus       179 ~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~~~~~---~l~~i~~~~g~~~~~~~~~~~~~~~  255 (350)
T d1q5ka_         179 NVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVD---QLVEIIKVLGTPTREQIREMNPNYT  255 (350)
T ss_dssp             CCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHH---HHHHHHHHHCCCCHHHHHHHCC---
T ss_pred             cccccccccccChHHhhcccCCCcceeecccceEEEehhhCCCCCCCCCHHH---HHHHHHHHhCCChHHhhhhhccchh
Confidence            355678899999998775 468999999999999999999999997552211   11111100000  0000000000  


Q ss_pred             -----C--------CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          223 -----T--------KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       223 -----~--------~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                           .        .......+.+.+|+.+||+.||++|| ++|+++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~  302 (350)
T d1q5ka_         256 EFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACA  302 (350)
T ss_dssp             CCCCCCCCCCCGGGTSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             hccccccccCchhhhcccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence                 0        11223456789999999999999999 999985

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-39  Score=273.63  Aligned_cols=227  Identities=16%  Similarity=0.104  Sum_probs=179.4

Q ss_pred             ccccceeeeccc----CCCCCeeeccc-------------hhhhHHHHhHhhhccccccccC-CceeeeceeeeecCcee
Q 044568            4 TKLSNFYRSSFN----ARNSPWISRVS-------------WTADIEVLSVAMRGSKCTRIRG-GLLLNVPVRAKLTSVSG   65 (257)
Q Consensus         4 ~~~~~~y~~~~~----~~~~~~i~~~~-------------~~~~~~~~~~~~~~~~~~~~~h-~~i~~~~~~~~~~~~~~   65 (257)
                      +.++.||+++..    +++.+|+|.+.             +.+|++.+.         +++| +||+++.+.+......+
T Consensus        35 G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~---------~l~h~pnIv~~~~~~~~~~~~~  105 (322)
T d1vzoa_          35 GAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLE---------HIRQSPFLVTLHYAFQTETKLH  105 (322)
T ss_dssp             TTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHH---------HHHTCTTBCCEEEEEEETTEEE
T ss_pred             CCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHH---------hccCCCeEEEeeeeeccCCcee
Confidence            578999999742    35567887532             457777777         7777 79999999999999999


Q ss_pred             EEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC
Q 044568           66 KIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN  145 (257)
Q Consensus        66 lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~  145 (257)
                      +||||+.+|+|.+++.  ....+++..+..++.|++.|+.|+|++   +++||||||+||+++.++.+||+|||+++...
T Consensus       106 ~v~e~~~~~~L~~~i~--~~~~~~e~~~~~~~~Qi~~al~~lH~~---~ivHrDiKp~Nill~~~~~vkL~DFG~a~~~~  180 (322)
T d1vzoa_         106 LILDYINGGELFTHLS--QRERFTEHEVQIYVGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGLSKEFV  180 (322)
T ss_dssp             EEECCCCSCBHHHHHH--HHSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEESCSSEEEECC
T ss_pred             eeeecccccHHHHHHH--hcccccHHHHHHHHHHHHHHHHHhhcC---CEEeccCCccceeecCCCCEEEeeccchhhhc
Confidence            9999999999999998  455678899999999999999999999   99999999999999999999999999987543


Q ss_pred             CCc----ccccCCCCccCcccccCC--CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhhhhhhhh
Q 044568          146 EDF----VIDKRDKGYMAPECYKRT--PISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFINRELNKL  219 (257)
Q Consensus       146 ~~~----~~~~~~~~~~aPE~~~~~--~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (257)
                      ...    ....+++.|++||.+...  .++.++||||+||++|||++|+.||...........+...           ..
T Consensus       181 ~~~~~~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~~~~~~~~i~~~-----------~~  249 (322)
T d1vzoa_         181 ADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRR-----------IL  249 (322)
T ss_dssp             GGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHH-----------HH
T ss_pred             ccccccccccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHh-----------cc
Confidence            322    445788899999999765  3678999999999999999999999866433321111110           01


Q ss_pred             hcCCCCCHHHHHHHHHHHHHcccCCCCCCC-h-----HHHHH
Q 044568          220 VRGTKVDKKNLENLVKVGLWCVQDEPALRP-M-----KCAVM  255 (257)
Q Consensus       220 ~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~-----~ei~~  255 (257)
                      ......+....+.+.+++.+||+.||.+|| +     +|+++
T Consensus       250 ~~~~~~~~~~s~~~~~li~~~l~~dP~~R~s~~~~t~~eil~  291 (322)
T d1vzoa_         250 KSEPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKE  291 (322)
T ss_dssp             HCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHT
T ss_pred             cCCCCCcccCCHHHHHHHHHHcccCHHHcCCCCcccHHHHHc
Confidence            111234455678899999999999999998 4     56653

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-38  Score=272.55  Aligned_cols=235  Identities=17%  Similarity=0.203  Sum_probs=170.9

Q ss_pred             cccccceeeecc-cCCCCCeeeccc----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCc----eeEE
Q 044568            3 CTKLSNFYRSSF-NARNSPWISRVS----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSV----SGKI   67 (257)
Q Consensus         3 ~~~~~~~y~~~~-~~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~----~~lV   67 (257)
                      .+.|+.||++.. .++..+|+|.+.          +.+|++.+.         .+.|+|++++.+.+...+.    .+++
T Consensus        18 ~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~---------~l~hp~iv~~~~~~~~~~~~~~~~~~l   88 (345)
T d1pmea_          18 EGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILL---------RFRHENIIGINDIIRAPTIEQMKDVYL   88 (345)
T ss_dssp             ---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHH---------HCCCTTBCCCCEEECCSSTTTCCCEEE
T ss_pred             eccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHH---------HcCCCCCCcEEEEEeeccccccceEEE
Confidence            367899999985 566777888764          234555555         8889999999999876542    3445


Q ss_pred             EeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCC
Q 044568           68 ERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNED  147 (257)
Q Consensus        68 ~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~  147 (257)
                      +||+.+|+|.+++..   ..+++.+++.++.|++.||.|||++   +|+||||||+|||+++++.+||+|||++......
T Consensus        89 ~~~~~~g~L~~~l~~---~~l~~~~i~~i~~qil~al~yLH~~---~iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~~~  162 (345)
T d1pmea_          89 VTHLMGADLYKLLKT---QHLSNDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLKICDFGLARVADPD  162 (345)
T ss_dssp             EEECCCEEHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECCGG
T ss_pred             EEeecCCchhhhhhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCcceEEECCCCCEEEcccCceeeccCC
Confidence            566778999999963   4699999999999999999999999   9999999999999999999999999998754322


Q ss_pred             ------cccccCCCCccCcccccC-CCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhh-------
Q 044568          148 ------FVIDKRDKGYMAPECYKR-TPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFIN-------  213 (257)
Q Consensus       148 ------~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~-------  213 (257)
                            .....+|+.|+|||.+.. ..++.++||||+||++|||++|+.||........   ...........       
T Consensus       163 ~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~pf~~~~~~~~---~~~~~~~~~~~~~~~~~~  239 (345)
T d1pmea_         163 HDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQ---LNHILGILGSPSQEDLNC  239 (345)
T ss_dssp             GCBCCTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH---HHHHHHHHCSCCHHHHHT
T ss_pred             CccceeeccccccceechHHHhhcCCCCCchhhhhccCceehHHhhCCCCCCCCCHHHH---HHHHhhhccCCChhhhhh
Confidence                  244567889999999854 4578999999999999999999999975521111   00000000000       


Q ss_pred             ---hhhhh-h--hcC-CCCC-----HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          214 ---RELNK-L--VRG-TKVD-----KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       214 ---~~~~~-~--~~~-~~~~-----~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                         ..... .  ... ...+     ......+.+++.+||+.||.+|| ++|+++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~ta~e~L~  294 (345)
T d1pmea_         240 IINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALA  294 (345)
T ss_dssp             CCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             hhhhhhhcccccCCccCCCCHHHhCCCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence               00000 0  000 0111     11235688999999999999999 999985

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.7e-39  Score=267.11  Aligned_cols=236  Identities=14%  Similarity=0.100  Sum_probs=179.1

Q ss_pred             ccccceeeeccc-CCCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeec
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPV   71 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~   71 (257)
                      +.||.||+++.. +++.+|+|.+.           +.+|++.+.         .++|+|++++...+...+..++|+|++
T Consensus        13 G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~---------~l~h~niv~~~~~~~~~~~~~iv~~~~   83 (292)
T d1unla_          13 GTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLK---------ELKHKNIVRLHDVLHSDKKLTLVFEFC   83 (292)
T ss_dssp             CSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHT---------TCCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             CcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHH---------hcCcCCEEeeccccccccceeEEeeec
Confidence            579999999965 55567888643           235555555         889999999999999999999999999


Q ss_pred             CCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCCCc---
Q 044568           72 RNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNEDF---  148 (257)
Q Consensus        72 ~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~~~---  148 (257)
                      .+++|..++.  ....+++..+..++.|++.||+|||++   +|+||||||+||+++.++.+|++|||.+.......   
T Consensus        84 ~~~~l~~~~~--~~~~~~~~~~~~~~~q~~~aL~~lH~~---~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~~~~~  158 (292)
T d1unla_          84 DQDLKKYFDS--CNGDLDPEIVKSFLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCY  158 (292)
T ss_dssp             SEEHHHHHHH--TTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSCCSCC
T ss_pred             cccccccccc--cccccchhHHHHHHHHHHHHHHHhhcC---CEeeecccCcccccccCCceeeeecchhhcccCCCccc
Confidence            9999988887  667889999999999999999999999   99999999999999999999999999998654332   


Q ss_pred             ccccCCCCccCcccccCCC-CCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHHHhhhh--hhh---hhhh--
Q 044568          149 VIDKRDKGYMAPECYKRTP-ISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVYKCFIN--REL---NKLV--  220 (257)
Q Consensus       149 ~~~~~~~~~~aPE~~~~~~-~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~--  220 (257)
                      ....++..|.|||.+.... ++.++||||+||++|||++|+.||.......+.  ...........  ...   ....  
T Consensus       159 ~~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  236 (292)
T d1unla_         159 SAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQ--LKRIFRLLGTPTEEQWPSMTKLPDY  236 (292)
T ss_dssp             CSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHH--HHHHHHHHCCCCTTTCTTGGGSTTC
T ss_pred             eeeccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCCCCCCCHHHH--HHHHHhhcCCCChhhhhhhhhcccc
Confidence            3345567789999987665 689999999999999999999998543222111  11111000000  000   0000  


Q ss_pred             ----------cCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          221 ----------RGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       221 ----------~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                                ..........+.+.+|+.+||+.||++|| ++|+++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~sa~e~L~  282 (292)
T d1unla_         237 KPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ  282 (292)
T ss_dssp             CCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             cccccccccchhhhccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence                      00012233446788999999999999999 999975

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=5.3e-38  Score=267.04  Aligned_cols=235  Identities=14%  Similarity=0.203  Sum_probs=173.5

Q ss_pred             ccccceeeeccc-CCCCCeeeccc------hhhhHHHHhHhhhcccccccc-CCceeeeceeeee--cCceeEEEeecCC
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS------WTADIEVLSVAMRGSKCTRIR-GGLLLNVPVRAKL--TSVSGKIERPVRN   73 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~------~~~~~~~~~~~~~~~~~~~~~-h~~i~~~~~~~~~--~~~~~lV~E~~~~   73 (257)
                      +.|+.||+++.. +++.+|+|.+.      +.+|++++.         .+. |+||+++.+.+..  ....++|||||.+
T Consensus        46 G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~Ei~il~---------~l~~hpnIv~~~~~~~~~~~~~~~~v~e~~~~  116 (328)
T d3bqca1          46 GKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILE---------NLRGGPNIITLADIVKDPVSRTPALVFEHVNN  116 (328)
T ss_dssp             CSSEEEEEEEETTTTEEEEEEEECSSCHHHHHHHHHHHH---------HHTTSTTBCCEEEEEECTTTCSEEEEEECCCS
T ss_pred             CcCeEEEEEEECCCCCEEEEEEECHHHHHHHHHHHHHHH---------hccCCCCCcEEEEEEEecCCCceeEEEeecCC
Confidence            578999999964 56667887633      456666665         553 9999999998874  4568999999999


Q ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCC-ceEEeeecccccCCC--Cccc
Q 044568           74 GSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFW-TAKILDFGLAKLPNE--DFVI  150 (257)
Q Consensus        74 gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~-~~kl~dfg~~~~~~~--~~~~  150 (257)
                      ++|.++.     +.+++.+++.++.|++.||.|||++   +|+||||||+|||++.++ .+|++|||++.....  ....
T Consensus       117 ~~L~~~~-----~~l~e~~i~~i~~qil~aL~~LH~~---gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~~~~~~~  188 (328)
T d3bqca1         117 TDFKQLY-----QTLTDYDIRFYMYEILKALDYCHSM---GIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNV  188 (328)
T ss_dssp             CBGGGTT-----TSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCGGGCEECCTTCCCCS
T ss_pred             CcHHHHh-----cCCCHHHHHHHHHHHHHHHHHHhhc---ccccccccccceEEcCCCCeeeecccccceeccCCCcccc
Confidence            9998764     3599999999999999999999999   999999999999998654 689999999975432  3455


Q ss_pred             ccCCCCccCcccccCC-CCCccccchhHHHHHHHHHhcCCCCCcCCCChhhH-HHHHHH---------HHhh--hhhhhh
Q 044568          151 DKRDKGYMAPECYKRT-PISVKADVYGYGIVLLETICCRKNMEIDASKPEEI-ILTNWV---------YKCF--INRELN  217 (257)
Q Consensus       151 ~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~-~~~~~~---------~~~~--~~~~~~  217 (257)
                      ..+|+.|+|||.+.+. .++.++||||+||++||+++|+.||.......... ......         ....  ......
T Consensus       189 ~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~  268 (328)
T d3bqca1         189 RVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFN  268 (328)
T ss_dssp             CCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCGGGG
T ss_pred             cccCccccCcccccCCCCCCcccchhhhhhhhHHhccCCCCCCCCchhHHHHHHHHHHHCCchhhhhhhhcccccCcccc
Confidence            6788899999998765 47999999999999999999999997553222111 000000         0000  000000


Q ss_pred             hhhcCC-----------CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          218 KLVRGT-----------KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       218 ~~~~~~-----------~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ......           .......+++.+|+.+||+.||++|| ++|+++
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~e~L~  318 (328)
T d3bqca1         269 DILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME  318 (328)
T ss_dssp             GTCCCCCCCCGGGGCCTTTGGGCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             hhcccccccchhhcccccccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            000000           11122346789999999999999999 999986

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-38  Score=268.69  Aligned_cols=237  Identities=15%  Similarity=0.155  Sum_probs=174.2

Q ss_pred             ccccceeeecc-cCCCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeeecC-----ceeE
Q 044568            4 TKLSNFYRSSF-NARNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTS-----VSGK   66 (257)
Q Consensus         4 ~~~~~~y~~~~-~~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~-----~~~l   66 (257)
                      +.||.||++.. .++..+|+|.+.           +.+|++++.         ++.|+|++++.+.+....     ..++
T Consensus        29 G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~---------~l~h~~iv~~~~~~~~~~~~~~~~~~~   99 (348)
T d2gfsa1          29 GAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLK---------HMKHENVIGLLDVFTPARSLEEFNDVY   99 (348)
T ss_dssp             GTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHH---------HCCCTTBCCCSEEECSCSSTTTCCCCE
T ss_pred             CCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHH---------hcCCCCeeeEEEEEeeccccccCceEE
Confidence            67999999985 567778898753           234555555         889999999999887433     3466


Q ss_pred             EEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCCC
Q 044568           67 IERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPNE  146 (257)
Q Consensus        67 V~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~~  146 (257)
                      +|||+.+|+|.+++.   ...+++.+++.++.|++.||.|||++   +|+||||||+|||++.++.+|++|||.+.....
T Consensus       100 i~~~~~gg~L~~~~~---~~~l~e~~~~~i~~qil~aL~~LH~~---giiHrDiKp~NILi~~~~~~kl~dfg~a~~~~~  173 (348)
T d2gfsa1         100 LVTHLMGADLNNIVK---CQKLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGLARHTDD  173 (348)
T ss_dssp             EEEECCSEEHHHHHT---TCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCC----CCTG
T ss_pred             EEEeecCCchhhhcc---cccccHHHHHHHHHHHHHHHHHHHhC---CCcccccCCccccccccccccccccchhcccCc
Confidence            778888999999995   45799999999999999999999999   999999999999999999999999999987766


Q ss_pred             CcccccCCCCccCcccccCCC-CCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHH-------Hhhhhhhhhh
Q 044568          147 DFVIDKRDKGYMAPECYKRTP-ISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVY-------KCFINRELNK  218 (257)
Q Consensus       147 ~~~~~~~~~~~~aPE~~~~~~-~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~-------~~~~~~~~~~  218 (257)
                      ......+++.|+|||...+.. ++.++||||+||++|+|++|+.||.+.........+.....       ..........
T Consensus       174 ~~~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  253 (348)
T d2gfsa1         174 EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARN  253 (348)
T ss_dssp             GGSSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTCCCHHHHH
T ss_pred             ccccccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhccchhhhh
Confidence            667777888899999877654 68999999999999999999999976522111111110000       0000000000


Q ss_pred             hh----cCCCCC-----HHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          219 LV----RGTKVD-----KKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       219 ~~----~~~~~~-----~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      ..    ......     ....+.+.+|+.+||+.||++|| ++|+++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~elL~  300 (348)
T d2gfsa1         254 YIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA  300 (348)
T ss_dssp             HHTTSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             hhhhcccCCCcchhhhcCCCCHHHHHHHHHHCcCChhhCcCHHHHhc
Confidence            00    000111     12346788999999999999999 999986

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-37  Score=266.34  Aligned_cols=235  Identities=16%  Similarity=0.104  Sum_probs=165.8

Q ss_pred             ccccceeeeccc-CCCCCeeeccc-----------hhhhHHHHhHhhhccccccccCCceeeeceeeee------cCcee
Q 044568            4 TKLSNFYRSSFN-ARNSPWISRVS-----------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKL------TSVSG   65 (257)
Q Consensus         4 ~~~~~~y~~~~~-~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~------~~~~~   65 (257)
                      +.|+.||++... ++..+|+|.+.           +.+|++++.         ++.|+||+++.+.+..      ..+.|
T Consensus        28 G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~---------~l~hpnIv~~~~~f~~~~~~~~~~~~~   98 (355)
T d2b1pa1          28 GAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMK---------CVNHKNIISLLNVFTPQKTLEEFQDVY   98 (355)
T ss_dssp             C--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHH---------HCCCTTBCCCSEEECSCCSTTTCCEEE
T ss_pred             CcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHH---------hcCCCCeeEEEEEEecccccccCceeE
Confidence            578999999965 57778888754           234444444         7789999999999864      36889


Q ss_pred             EEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccCC
Q 044568           66 KIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLPN  145 (257)
Q Consensus        66 lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~~  145 (257)
                      +|||||.++ +.+.+.    ..+++.+++.++.|++.||.|||++   ||+||||||+|||++.++.++++|||+++...
T Consensus        99 iv~Ey~~~~-l~~~~~----~~~~~~~i~~~~~qil~gl~~LH~~---giiHrDlKP~Nil~~~~~~~kl~df~~~~~~~  170 (355)
T d2b1pa1          99 LVMELMDAN-LCQVIQ----MELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAG  170 (355)
T ss_dssp             EEEECCSEE-HHHHHT----SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCCCC-----
T ss_pred             EEEeccchH-HHHhhh----cCCCHHHHHHHHHHHHHHHHHhhhc---ccccccCCccccccccccceeeechhhhhccc
Confidence            999999765 445543    3589999999999999999999999   99999999999999999999999999877543


Q ss_pred             C--CcccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhhHHHHHHHH------Hhhhhhhhh
Q 044568          146 E--DFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEEIILTNWVY------KCFINRELN  217 (257)
Q Consensus       146 ~--~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~------~~~~~~~~~  217 (257)
                      .  ......+|+.|+|||.+.+..++.++||||+||++|||++|+.||.................      .........
T Consensus       171 ~~~~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  250 (355)
T d2b1pa1         171 TSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVR  250 (355)
T ss_dssp             ----------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHTTSCHHHH
T ss_pred             cccccccccccccccChhhhcCCCCCCCcccccccchHHHHhhCCCCCCCCCHHHHHHHHHHhccCCCHHHHHHhhhhHH
Confidence            3  23455788999999999999999999999999999999999999975521111000000000      000000000


Q ss_pred             hhhcC-------------------C--CCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          218 KLVRG-------------------T--KVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       218 ~~~~~-------------------~--~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                      .....                   .  .......+.+.+|+.+||+.||++|| ++|+++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~  310 (355)
T d2b1pa1         251 NYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQ  310 (355)
T ss_dssp             HHHHTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             HHhhcCccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence            00000                   0  11223457889999999999999999 999985

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.2e-33  Score=238.30  Aligned_cols=249  Identities=19%  Similarity=0.154  Sum_probs=175.0

Q ss_pred             ccccceeeecc-cCCCCCeeeccc--------hhhhHHHHhHhhhc--cccccccCCceeeeceeeeec--CceeEEEee
Q 044568            4 TKLSNFYRSSF-NARNSPWISRVS--------WTADIEVLSVAMRG--SKCTRIRGGLLLNVPVRAKLT--SVSGKIERP   70 (257)
Q Consensus         4 ~~~~~~y~~~~-~~~~~~~i~~~~--------~~~~~~~~~~~~~~--~~~~~~~h~~i~~~~~~~~~~--~~~~lV~E~   70 (257)
                      +.||.||+++. .+++.+|||.+.        +.+|++.+....+.  .......|+|++++...+...  ...++++++
T Consensus        24 G~fg~Vy~~~~~~~g~~vAvKvi~~~~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~  103 (362)
T d1q8ya_          24 GHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVF  103 (362)
T ss_dssp             CSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEETTEEEEEEEE
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEeccccchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeeeccccceeeeeee
Confidence            56899999996 457778888654        24455555422211  012234688999999887653  455667776


Q ss_pred             cCCC-CHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhh-CCCCCeeeccCCCCceeeCCCC------ceEEeeecccc
Q 044568           71 VRNG-SLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHD-ECEPPILHCDIKPQNILMDEFW------TAKILDFGLAK  142 (257)
Q Consensus        71 ~~~g-sL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~-~~~~~i~h~dl~~~nil~~~~~------~~kl~dfg~~~  142 (257)
                      +..+ +............+++..+..++.|++.|+.|||+ .   ||+||||||+|||++.++      .++++|||.+.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~---~IvHrDlKp~NIll~~~~~~~~~~~~kl~dfg~s~  180 (362)
T d1q8ya_         104 EVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRC---GIIHTDIKPENVLMEIVDSPENLIQIKIADLGNAC  180 (362)
T ss_dssp             CCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTT---CEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCE
T ss_pred             cccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhhc---CcccccCChhHeeeeccCcccccceeeEeeccccc
Confidence            6544 44444444467788999999999999999999998 6   999999999999997654      38999999998


Q ss_pred             cCCCCcccccCCCCccCcccccCCCCCccccchhHHHHHHHHHhcCCCCCcCCCChhh---HHHHHHHHHhhhh-hh---
Q 044568          143 LPNEDFVIDKRDKGYMAPECYKRTPISVKADVYGYGIVLLETICCRKNMEIDASKPEE---IILTNWVYKCFIN-RE---  215 (257)
Q Consensus       143 ~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~l~el~~g~~pf~~~~~~~~~---~~~~~~~~~~~~~-~~---  215 (257)
                      ..........+|+.|+|||.+....++.++|+||+||+++||++|+.||.........   ..+.......... ..   
T Consensus       181 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~  260 (362)
T d1q8ya_         181 WYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLR  260 (362)
T ss_dssp             ETTBCCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHH
T ss_pred             ccccccccccccccccChhhccccCCCccccccchHHHHHHHHHCCCCCCCCccccccchhHHHHHHHHHhCCCCHHHhh
Confidence            7777777778999999999999999999999999999999999999999754221110   0111110000000 00   


Q ss_pred             -------------------------hhh-hhcCCCCCHHHHHHHHHHHHHcccCCCCCCC-hHHHHH
Q 044568          216 -------------------------LNK-LVRGTKVDKKNLENLVKVGLWCVQDEPALRP-MKCAVM  255 (257)
Q Consensus       216 -------------------------~~~-~~~~~~~~~~~~~~l~~l~~~cl~~~p~~RP-~~ei~~  255 (257)
                                               ... ............+.+.+|+.+||+.||.+|| ++|+++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rpta~e~L~  327 (362)
T d1q8ya_         261 NGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVN  327 (362)
T ss_dssp             HCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHT
T ss_pred             cccccccccccchhhhccccccCCchhhhcccccccCcccCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence                                     000 0011134566778999999999999999999 999986

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.73  E-value=1.2e-19  Score=141.39  Aligned_cols=152  Identities=11%  Similarity=-0.014  Sum_probs=100.2

Q ss_pred             ccccceeeecccCCCCCeeeccc-------------------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCce
Q 044568            4 TKLSNFYRSSFNARNSPWISRVS-------------------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVS   64 (257)
Q Consensus         4 ~~~~~~y~~~~~~~~~~~i~~~~-------------------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~   64 (257)
                      ++++.||+++..+++.+++|...                   +..+.......... .+.++.|.++......    ...
T Consensus        11 G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~l~~l~~~~v~~~~~~----~~~   85 (191)
T d1zara2          11 GKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFR-ALQKLQGLAVPKVYAW----EGN   85 (191)
T ss_dssp             CSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHH-HHHHTTTSSSCCEEEE----ETT
T ss_pred             CcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHH-HHHHccCCCcceEEEe----cCC
Confidence            68999999998888999998422                   11111111111111 3346667666544322    234


Q ss_pred             eEEEeecCCCCHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeeeccCCCCceeeCCCCceEEeeecccccC
Q 044568           65 GKIERPVRNGSLTDIIFCSAERNPYWNQRVRIALDVAKGILYLHDECEPPILHCDIKPQNILMDEFWTAKILDFGLAKLP  144 (257)
Q Consensus        65 ~lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~~~  144 (257)
                      ++||||++++.+.+         ++......++.|++.|+.|||++   +++||||||+|||++++ .++++|||.+...
T Consensus        86 ~lvme~~~~~~~~~---------l~~~~~~~i~~ql~~~l~~lH~~---giiHrDiKP~NILv~~~-~~~liDFG~a~~~  152 (191)
T d1zara2          86 AVLMELIDAKELYR---------VRVENPDEVLDMILEEVAKFYHR---GIVHGDLSQYNVLVSEE-GIWIIDFPQSVEV  152 (191)
T ss_dssp             EEEEECCCCEEGGG---------CCCSCHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEEETT-EEEECCCTTCEET
T ss_pred             EEEEEeeccccccc---------hhhHHHHHHHHHHHHHHHHHhhC---CEEEccCChhheeeeCC-CEEEEECCCcccC
Confidence            79999998765543         33345678999999999999999   99999999999999975 6899999988754


Q ss_pred             CCCcccccCCCCccCc------ccccCCCCCccccchhHHH
Q 044568          145 NEDFVIDKRDKGYMAP------ECYKRTPISVKADVYGYGI  179 (257)
Q Consensus       145 ~~~~~~~~~~~~~~aP------E~~~~~~~~~~~Di~s~G~  179 (257)
                      ......     .|...      +. ....|+.++|+||..-
T Consensus       153 ~~~~~~-----~~l~rd~~~~~~~-f~r~y~~~~d~~s~~~  187 (191)
T d1zara2         153 GEEGWR-----EILERDVRNIITY-FSRTYRTEKDINSAID  187 (191)
T ss_dssp             TSTTHH-----HHHHHHHHHHHHH-HHHHHCCCCCHHHHHH
T ss_pred             CCCCcH-----HHHHHHHHHHHHH-HcCCCCCcccHHHHHH
Confidence            332211     01110      11 1245678899999753

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.58  E-value=9.9e-05  Score=57.91  Aligned_cols=120  Identities=13%  Similarity=0.104  Sum_probs=72.6

Q ss_pred             cceeeecccCCCCCeeeccc---------hhhhHHHHhHhhhccccccccCCceeeeceeeeecCceeEEEeecCCCCHH
Q 044568            7 SNFYRSSFNARNSPWISRVS---------WTADIEVLSVAMRGSKCTRIRGGLLLNVPVRAKLTSVSGKIERPVRNGSLT   77 (257)
Q Consensus         7 ~~~y~~~~~~~~~~~i~~~~---------~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lV~E~~~~gsL~   77 (257)
                      +.||+.+. ++...++|...         ..+|.+.+.. +.+    .++-|   ++.......+..++|||+.+|.++.
T Consensus        28 ~~v~rv~~-~~~~~vlk~~~~~~~~~~~~~~~E~~~l~~-l~~----~vpvP---~vl~~~~~~~~~~lv~~~l~G~~~~   98 (263)
T d1j7la_          28 AKVYKLVG-ENENLYLKMTDSRYKGTTYDVEREKDMMLW-LEG----KLPVP---KVLHFERHDGWSNLLMSEADGVLCS   98 (263)
T ss_dssp             SEEEEEEC-SSCEEEEEEECGGGTTSTTCHHHHHHHHHH-HTT----TSCCC---CEEEEEEETTEEEEEEECCSSEEHH
T ss_pred             CcEEEEEe-CCCeEEEEEcCCCcccchhhHHHHHHHHHH-Hhc----cCCCC---cEEEEEecCCceEEEEEeccccccc
Confidence            57888764 33344555432         2445555442 112    22233   2334455677889999999988886


Q ss_pred             HHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCC----------------------------------------------
Q 044568           78 DIIFCSAERNPYWNQRVRIALDVAKGILYLHDEC----------------------------------------------  111 (257)
Q Consensus        78 ~~l~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~----------------------------------------------  111 (257)
                      +....  .     .....++.+++..+..||+..                                              
T Consensus        99 ~~~~~--~-----~~~~~~~~~l~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (263)
T d1j7la_          99 EEYED--E-----QSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPRELY  171 (263)
T ss_dssp             HHTTT--C-----SCHHHHHHHHHHHHHHHHTSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCCGGGGSTTCSCSSHHHHH
T ss_pred             ccccc--c-----ccHHHHHHHHHHHHHHHhccCccccccCcchhhhhhhHHHHHHHHhhhhhhhcccccccchHHHHHH
Confidence            65431  1     112334555555555565431                                              


Q ss_pred             ----------CCCeeeccCCCCceeeCCCCceEEeeecccc
Q 044568          112 ----------EPPILHCDIKPQNILMDEFWTAKILDFGLAK  142 (257)
Q Consensus       112 ----------~~~i~h~dl~~~nil~~~~~~~kl~dfg~~~  142 (257)
                                ...++|+|+.+.||+++++....++||+.+.
T Consensus       172 ~~l~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDwe~a~  212 (263)
T d1j7la_         172 DFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG  212 (263)
T ss_dssp             HHHHHSCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred             HHHHhcCCcCCcEEEEeeccCcceeecCCceEEEeechhcc
Confidence                      1247899999999999987667799998764

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=97.25  E-value=0.00046  Score=53.60  Aligned_cols=29  Identities=21%  Similarity=0.223  Sum_probs=24.8

Q ss_pred             CeeeccCCCCceeeCCCCceEEeeecccc
Q 044568          114 PILHCDIKPQNILMDEFWTAKILDFGLAK  142 (257)
Q Consensus       114 ~i~h~dl~~~nil~~~~~~~kl~dfg~~~  142 (257)
                      .++|+|+.+.||+++++..+.++||+.+.
T Consensus       176 ~liHgD~~~~Nvl~~~~~~~~iID~~~~~  204 (255)
T d1nd4a_         176 VVTHGDACLPNIMVENGRFSGFIDCGRLG  204 (255)
T ss_dssp             EEECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred             eEEeCCCCCcceEEeCCceEEEEEchhcc
Confidence            47999999999999987667899998654

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=93.59  E-value=0.035  Score=45.75  Aligned_cols=28  Identities=25%  Similarity=0.452  Sum_probs=24.5

Q ss_pred             CeeeccCCCCceeeCCCCceEEeeecccc
Q 044568          114 PILHCDIKPQNILMDEFWTAKILDFGLAK  142 (257)
Q Consensus       114 ~i~h~dl~~~nil~~~~~~~kl~dfg~~~  142 (257)
                      .++|+|+++.||+++++ .++++||..+.
T Consensus       224 ~LiHGDl~~gNIlv~~~-~~~vID~E~a~  251 (392)
T d2pula1         224 TLIHGDLHTGSIFASEH-ETKVIDPEFAF  251 (392)
T ss_dssp             EEECSCCCGGGEEECSS-CEEECCCTTCE
T ss_pred             ceeccCCcCCceeEcCC-ceEEechhhcc
Confidence            68999999999999876 58999998764

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=93.45  E-value=0.3  Score=38.61  Aligned_cols=28  Identities=29%  Similarity=0.271  Sum_probs=22.8

Q ss_pred             CCeeeccCCCCceeeCCCCceEEeeecccc
Q 044568          113 PPILHCDIKPQNILMDEFWTAKILDFGLAK  142 (257)
Q Consensus       113 ~~i~h~dl~~~nil~~~~~~~kl~dfg~~~  142 (257)
                      .+++|+|+.+.||+++++  ..++||+-+.
T Consensus       192 ~~liHgDlh~~NvL~~~~--~~~IDFdd~~  219 (325)
T d1zyla1         192 VLRLHGDCHAGNILWRDG--PMFVDLDDAR  219 (325)
T ss_dssp             CEECCSSCSGGGEEESSS--EEECCCTTCC
T ss_pred             ceeecCCCCcccEEEeCC--ceEEechhcc
Confidence            378999999999999754  4578998664

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=91.24  E-value=0.026  Score=44.82  Aligned_cols=29  Identities=21%  Similarity=0.303  Sum_probs=25.9

Q ss_pred             CeeeccCCCCceeeCCCCceEEeeecccc
Q 044568          114 PILHCDIKPQNILMDEFWTAKILDFGLAK  142 (257)
Q Consensus       114 ~i~h~dl~~~nil~~~~~~~kl~dfg~~~  142 (257)
                      +++|+|+.+.|++++++....++||+.+.
T Consensus       184 giIHgDl~~dNvl~~~~~v~gvIDF~~~~  212 (316)
T d2ppqa1         184 GVIHADLFQDNVFFLGDELSGLIDFYFAC  212 (316)
T ss_dssp             EEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             ccccCCcchhhhhcccccceeEecccccc
Confidence            79999999999999988777899998763