BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>044569
SARTAPEKTEAQNTERERRSTEWEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAA
KTIPSNGFEVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVTSPPRTRFRCGRICLR

High Scoring Gene Products

Symbol, full name Information P value
AT4G39880 protein from Arabidopsis thaliana 9.7e-09

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  044569
        (116 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2140030 - symbol:AT4G39880 species:3702 "Arabi...   131  9.7e-09   1


>TAIR|locus:2140030 [details] [associations]
            symbol:AT4G39880 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003735
            "structural constituent of ribosome" evidence=IEA;ISS] [GO:0005622
            "intracellular" evidence=IEA] [GO:0005840 "ribosome"
            evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
            [GO:0042254 "ribosome biogenesis" evidence=ISS] [GO:0006354
            "DNA-dependent transcription, elongation" evidence=RCA] [GO:0009220
            "pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
            InterPro:IPR012677 InterPro:IPR012678 InterPro:IPR013025
            Pfam:PF00276 EMBL:CP002687 GO:GO:0000166 GO:GO:0006412
            Gene3D:3.30.70.330 GO:GO:0005840 GO:GO:0003735 EMBL:AL161596
            EMBL:AL035708 SUPFAM:SSF54189 EMBL:AY093190 EMBL:BT006553
            IPI:IPI00533558 PIR:T06094 RefSeq:NP_195698.1 UniGene:At.31054
            ProteinModelPortal:Q9SMR5 SMR:Q9SMR5 STRING:Q9SMR5 PRIDE:Q9SMR5
            EnsemblPlants:AT4G39880.1 GeneID:830147 KEGG:ath:AT4G39880
            TAIR:At4g39880 InParanoid:Q9SMR5 OMA:LIAKPDY PhylomeDB:Q9SMR5
            ProtClustDB:CLSN2685886 Genevestigator:Q9SMR5 Uniprot:Q9SMR5
        Length = 178

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 36/74 (48%), Positives = 39/74 (52%)

Query:    41 NLPIKLLMPNTFQNIKEIAAKTIPSN-------------GFEVDEARTLNXXXXXXXXXX 87
             NLPIKLLMP    NI E A KTIPS              GF+V++  TLN          
Sbjct:    14 NLPIKLLMPAKLTNIHEFALKTIPSASKIEIKRVLESLYGFDVEKVNTLNMDGKKKKRGG 73

Query:    88 LLNAKPDYKKAYVT 101
             LL AK DYKKAYVT
Sbjct:    74 LLIAKADYKKAYVT 87


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.128   0.364    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      116       106   0.00091  102 3  11 23  0.47    30
                                                     29  0.39    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  546 (58 KB)
  Total size of DFA:  113 KB (2075 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.75u 0.11s 11.86t   Elapsed:  00:00:00
  Total cpu time:  11.75u 0.11s 11.86t   Elapsed:  00:00:00
  Start:  Fri May 10 00:14:52 2013   End:  Fri May 10 00:14:52 2013

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