BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044569
(116 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q605B4|RL23_METCA 50S ribosomal protein L23 OS=Methylococcus capsulatus (strain ATCC
33009 / NCIMB 11132 / Bath) GN=rplW PE=3 SV=1
Length = 97
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 67 GFEVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVTSPP 104
G +VD R LN GK K++G + + D+KKAYV P
Sbjct: 51 GVKVDSVRILNVKGKSKRFGRFMGQRSDWKKAYVKLKP 88
>sp|Q12SV7|RL23_SHEDO 50S ribosomal protein L23 OS=Shewanella denitrificans (strain OS217
/ ATCC BAA-1090 / DSM 15013) GN=rplW PE=3 SV=1
Length = 100
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%)
Query: 57 EIAAKTIPSNGFEVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVT 101
EI A EVD RTL GK K+ GG + + D+KKAYVT
Sbjct: 42 EIKAAVAKLFEVEVDSVRTLVNKGKTKRTGGRVGRRSDWKKAYVT 86
>sp|A5WCJ2|RL23_PSYWF 50S ribosomal protein L23 OS=Psychrobacter sp. (strain PRwf-1)
GN=rplW PE=3 SV=1
Length = 116
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 67 GFEVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVT 101
G EV + TLN GK K++G + + DYKKAYVT
Sbjct: 52 GVEVTKVNTLNVKGKTKRFGRTVGRRNDYKKAYVT 86
>sp|Q089Q2|RL23_SHEFN 50S ribosomal protein L23 OS=Shewanella frigidimarina (strain NCIMB
400) GN=rplW PE=3 SV=1
Length = 100
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%)
Query: 57 EIAAKTIPSNGFEVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVT 101
EI A EVD RTL GK K+ GG + + D+KKAYVT
Sbjct: 42 EIKAAVAKLFEVEVDSVRTLVNKGKTKRTGGRVGRRIDWKKAYVT 86
>sp|Q1QDI4|RL23_PSYCK 50S ribosomal protein L23 OS=Psychrobacter cryohalolentis (strain
K5) GN=rplW PE=3 SV=1
Length = 116
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 67 GFEVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVT 101
G EV + TLN GK K++G + + DYKKAYVT
Sbjct: 52 GVEVLKVNTLNVKGKTKRFGKSIGRRNDYKKAYVT 86
>sp|Q4FUF4|RL23_PSYA2 50S ribosomal protein L23 OS=Psychrobacter arcticus (strain DSM
17307 / 273-4) GN=rplW PE=3 SV=1
Length = 116
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 67 GFEVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVT 101
G EV + TLN GK K++G + + DYKKAYVT
Sbjct: 52 GVEVLKVNTLNVKGKTKRFGKSIGRRNDYKKAYVT 86
>sp|A4ST04|RL23_AERS4 50S ribosomal protein L23 OS=Aeromonas salmonicida (strain A449)
GN=rplW PE=3 SV=1
Length = 100
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 29 ITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSNGFEVDEARTLNKGGKKKKWGGL 88
+ E QN + K+ + T +K AK EV+ RTLN GK K+ G
Sbjct: 23 VAEKQN------TIVFKIAVDATKAEVKAAVAKLFE---VEVETVRTLNMKGKTKRSGAR 73
Query: 89 LNAKPDYKKAYVT 101
+ + D+KKAYVT
Sbjct: 74 VGRRSDWKKAYVT 86
>sp|A0KF23|RL23_AERHH 50S ribosomal protein L23 OS=Aeromonas hydrophila subsp. hydrophila
(strain ATCC 7966 / NCIB 9240) GN=rplW PE=3 SV=1
Length = 100
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 29 ITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSNGFEVDEARTLNKGGKKKKWGGL 88
+ E QN + K+ + T +K AK EV+ RTLN GK K+ G
Sbjct: 23 VAEKQN------TIVFKVAVDATKAEVKAAVAKLFE---VEVETVRTLNMKGKTKRAGAR 73
Query: 89 LNAKPDYKKAYVT 101
+ + D+KKAYVT
Sbjct: 74 VGRRSDWKKAYVT 86
>sp|Q0ABH3|RL23_ALHEH 50S ribosomal protein L23 OS=Alkalilimnicola ehrlichei (strain
MLHE-1) GN=rplW PE=3 SV=1
Length = 99
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 70 VDEARTLNKGGKKKKWGGLLNAKPDYKKAYVT 101
V + RT+ GK+K++G L +PD+KKAYVT
Sbjct: 54 VRDVRTVKMKGKRKRFGRLEGKRPDWKKAYVT 85
>sp|B1KMY1|RL23_SHEWM 50S ribosomal protein L23 OS=Shewanella woodyi (strain ATCC 51908 /
MS32) GN=rplW PE=3 SV=1
Length = 99
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%)
Query: 57 EIAAKTIPSNGFEVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVT 101
EI A EVD RTL GK K+ G + + D+KKAYVT
Sbjct: 42 EIKAAVAQLFEVEVDSVRTLVNKGKTKRTGARMGRRVDWKKAYVT 86
>sp|Q9NY46|SCN3A_HUMAN Sodium channel protein type 3 subunit alpha OS=Homo sapiens
GN=SCN3A PE=1 SV=2
Length = 2000
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 1 SARTAPEKTEAQNTERERRSTEWEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAA 60
+ + PE T + R+RR + ++I E+ E +G+Q A + I ++ NT + ++E
Sbjct: 667 TGQLPPEGTTTETEVRKRRLSSYQISMEMLEDSSGRQRA--VSIASILTNTMEELEESRQ 724
Query: 61 KTIP 64
K P
Sbjct: 725 KCPP 728
>sp|Q0I0A3|RL23_SHESR 50S ribosomal protein L23 OS=Shewanella sp. (strain MR-7) GN=rplW
PE=3 SV=2
Length = 100
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 25/45 (55%)
Query: 57 EIAAKTIPSNGFEVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVT 101
EI A EV+ RTL GK K+ GG + + D+KKAYVT
Sbjct: 42 EIKAAVAKLFEVEVESVRTLVSKGKTKRTGGRVGRRSDWKKAYVT 86
>sp|Q0HNT5|RL23_SHESM 50S ribosomal protein L23 OS=Shewanella sp. (strain MR-4) GN=rplW
PE=3 SV=2
Length = 100
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 25/45 (55%)
Query: 57 EIAAKTIPSNGFEVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVT 101
EI A EV+ RTL GK K+ GG + + D+KKAYVT
Sbjct: 42 EIKAAVAKLFEVEVESVRTLVSKGKTKRTGGRVGRRSDWKKAYVT 86
>sp|A8G1E6|RL23_SHESH 50S ribosomal protein L23 OS=Shewanella sediminis (strain HAW-EB3)
GN=rplW PE=3 SV=1
Length = 99
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 69 EVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVT 101
EVD RTL GK K+ G + + D+KKAYVT
Sbjct: 54 EVDSVRTLVNKGKTKRTGARMGRRVDWKKAYVT 86
>sp|A8GYX8|RL23_SHEPA 50S ribosomal protein L23 OS=Shewanella pealeana (strain ATCC
700345 / ANG-SQ1) GN=rplW PE=3 SV=1
Length = 100
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 68 FEVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVT 101
EVD RTL GK K+ G + + D+KKAYVT
Sbjct: 53 VEVDSVRTLVNKGKTKRTGARVGRRSDWKKAYVT 86
>sp|A1WVC0|RL23_HALHL 50S ribosomal protein L23 OS=Halorhodospira halophila (strain DSM
244 / SL1) GN=rplW PE=3 SV=1
Length = 98
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 54 NIKEIAAKTIPSNGFEVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVT 101
N KEI A +V RT+N GK+K++G + + D+KKAYVT
Sbjct: 38 NKKEIKAAVEKLFDVQVTGVRTVNAKGKRKRFGMIRGRRRDWKKAYVT 85
>sp|Q1ISC0|RL23_KORVE 50S ribosomal protein L23 OS=Koribacter versatilis (strain
Ellin345) GN=rplW PE=3 SV=1
Length = 98
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 29 ITEAQNG-KQAAGNLPIKLLMPNTFQNIKEIAAKTIPSNGFEVDEARTLNKGGKKKKWGG 87
ITE G K+ L ++ T IKE KT +VD RT N GK+++ G
Sbjct: 14 ITEKGLGVKETESTLVFEVSANATKTEIKEAVQKTFK---VKVDTVRTANFVGKERRRGK 70
Query: 88 LLNAKPDYKKAYV 100
+PD+KKAYV
Sbjct: 71 FSGYRPDWKKAYV 83
>sp|Q1H4N5|RL23_METFK 50S ribosomal protein L23 OS=Methylobacillus flagellatus (strain KT
/ ATCC 51484 / DSM 6875) GN=rplW PE=3 SV=1
Length = 102
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 69 EVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVTSPP 104
EVD +N GGK K+ G + D+KKAYV+ P
Sbjct: 57 EVDSVTVVNVGGKVKRAGRTFGRRKDWKKAYVSLKP 92
>sp|A5UDU5|RL23_HAEIE 50S ribosomal protein L23 OS=Haemophilus influenzae (strain PittEE)
GN=rplW PE=3 SV=1
Length = 109
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 31 EAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSNGFEVDEARTLNKGGKKKKWGGLLN 90
+A N + + + +K+ + N EIAA +VD RT+ GK K+ G +
Sbjct: 18 KATNNAEKSNTVVLKVALD---ANKAEIAAAVAQLFEVKVDSVRTVVVKGKTKRRGNKMG 74
Query: 91 AKPDYKKAYVT 101
+ D+KKAYVT
Sbjct: 75 RRSDWKKAYVT 85
>sp|B2UEL7|RL23_RALPJ 50S ribosomal protein L23 OS=Ralstonia pickettii (strain 12J)
GN=rplW PE=3 SV=1
Length = 104
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 69 EVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVTSPP 104
EV+ + LN+ GK+K++G + + KKAYV+ P
Sbjct: 58 EVESVQILNQKGKQKRFGRFMGRRDHVKKAYVSLKP 93
>sp|Q8XV14|RL23_RALSO 50S ribosomal protein L23 OS=Ralstonia solanacearum (strain
GMI1000) GN=rplW PE=3 SV=1
Length = 104
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 69 EVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVTSPP 104
EV+ + LN+ GK+K++G + + KKAYV+ P
Sbjct: 58 EVESVQILNQKGKQKRFGRFMGRRDHVKKAYVSLKP 93
>sp|A3Q984|RL23_SHELP 50S ribosomal protein L23 OS=Shewanella loihica (strain ATCC
BAA-1088 / PV-4) GN=rplW PE=3 SV=1
Length = 99
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 69 EVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVT 101
EVD RTL GK K+ G + D+KKAYVT
Sbjct: 54 EVDSVRTLVNKGKTKRHGARTGRRSDWKKAYVT 86
>sp|Q82X86|RL23_NITEU 50S ribosomal protein L23 OS=Nitrosomonas europaea (strain ATCC
19718 / NBRC 14298) GN=rplW PE=3 SV=1
Length = 111
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 65 SNGFEVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVT 101
S +V + +N GKKK++G L K D+KKA+V+
Sbjct: 57 SQNIQVKSVQVVNVKGKKKRFGRYLGQKSDWKKAFVS 93
>sp|Q8EK66|RL23_SHEON 50S ribosomal protein L23 OS=Shewanella oneidensis (strain MR-1)
GN=rplW PE=3 SV=2
Length = 100
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%)
Query: 57 EIAAKTIPSNGFEVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVT 101
EI A EV+ RTL GK K+ GG + D+KKAYVT
Sbjct: 42 EIKAAVAKLFEVEVESVRTLVSKGKTKRTGGRTGRRSDWKKAYVT 86
>sp|B8CND5|RL23_SHEPW 50S ribosomal protein L23 OS=Shewanella piezotolerans (strain WP3 /
JCM 13877) GN=rplW PE=3 SV=1
Length = 100
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 69 EVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVT 101
EVD RTL GK K+ G + D+KKAYVT
Sbjct: 54 EVDSVRTLVNKGKTKRHGARTGRRSDWKKAYVT 86
>sp|P44361|RL23_HAEIN 50S ribosomal protein L23 OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=rplW PE=3 SV=1
Length = 99
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 32 AQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSNGFEVDEARTLNKGGKKKKWGGLLNA 91
A N + + + +K+ + N EIAA +VD RT+ GK K+ G +
Sbjct: 19 ATNNAEKSNTVVLKVALD---ANKAEIAAAVAQLFEVKVDSVRTVVVKGKTKRRGNKMGR 75
Query: 92 KPDYKKAYVT 101
+ D+KKAYVT
Sbjct: 76 RSDWKKAYVT 85
>sp|A5UHT2|RL23_HAEIG 50S ribosomal protein L23 OS=Haemophilus influenzae (strain PittGG)
GN=rplW PE=3 SV=1
Length = 99
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 32 AQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSNGFEVDEARTLNKGGKKKKWGGLLNA 91
A N + + + +K+ + N EIAA +VD RT+ GK K+ G +
Sbjct: 19 ATNNAEKSNTVVLKVALD---ANKAEIAAAVAQLFEVKVDSVRTVVVKGKTKRRGNKMGR 75
Query: 92 KPDYKKAYVT 101
+ D+KKAYVT
Sbjct: 76 RSDWKKAYVT 85
>sp|Q4QMC0|RL23_HAEI8 50S ribosomal protein L23 OS=Haemophilus influenzae (strain
86-028NP) GN=rplW PE=3 SV=1
Length = 99
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 32 AQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSNGFEVDEARTLNKGGKKKKWGGLLNA 91
A N + + + +K+ + N EIAA +VD RT+ GK K+ G +
Sbjct: 19 ATNNAEKSNTVVLKVALD---ANKAEIAAAVAQLFEVKVDSVRTVVVKGKTKRRGNKMGR 75
Query: 92 KPDYKKAYVT 101
+ D+KKAYVT
Sbjct: 76 RSDWKKAYVT 85
>sp|C5BGM3|RL23_EDWI9 50S ribosomal protein L23 OS=Edwardsiella ictaluri (strain 93-146)
GN=rplW PE=3 SV=1
Length = 100
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 68 FEVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVT 101
EVD RTL GK K+ G + + D+KKAYVT
Sbjct: 53 VEVDTVRTLVVKGKVKRHGQRIGRRSDWKKAYVT 86
>sp|Q57602|Y138_METJA Putative glutamine amidotransferase-like protein MJ0138
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0138
PE=4 SV=1
Length = 482
Score = 33.5 bits (75), Expect = 0.44, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 40 GNLPIKLLMPNTFQNIKEIAAKTIPSNGFEVDEARTLNKGGKKK 83
GNLP K++ N ++ IK++ A IP G + E+++LN KK+
Sbjct: 19 GNLPTKIITENNYKEIKDLDALIIP--GGSLIESKSLNDDLKKE 60
>sp|B0TM10|RL23_SHEHH 50S ribosomal protein L23 OS=Shewanella halifaxensis (strain
HAW-EB4) GN=rplW PE=3 SV=1
Length = 100
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 68 FEVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVT 101
EVD RTL GK K+ G + D+KKAYVT
Sbjct: 53 VEVDSVRTLVNKGKTKRTGARTGRRSDWKKAYVT 86
>sp|C4L7T2|RL23_TOLAT 50S ribosomal protein L23 OS=Tolumonas auensis (strain DSM 9187 /
TA4) GN=rplW PE=3 SV=1
Length = 101
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 70 VDEARTLNKGGKKKKWGGLLNAKPDYKKAYVT 101
V+ RTLN GK K+ G + + D+KKAYVT
Sbjct: 55 VEAVRTLNVVGKTKRTGSRMGRRSDWKKAYVT 86
>sp|Q1LI39|RL23_RALME 50S ribosomal protein L23 OS=Ralstonia metallidurans (strain CH34 /
ATCC 43123 / DSM 2839) GN=rplW PE=3 SV=1
Length = 104
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 69 EVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVTSPP 104
EV + LN+ GK+K++G + + KKAYV+ P
Sbjct: 58 EVQSVQILNQKGKQKRFGRFMGRRNHVKKAYVSLKP 93
>sp|B3R7S1|RL23_CUPTR 50S ribosomal protein L23 OS=Cupriavidus taiwanensis (strain R1 /
LMG 19424) GN=rplW PE=3 SV=1
Length = 104
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 69 EVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVTSPP 104
EV + LN+ GK+K++G + + KKAYV+ P
Sbjct: 58 EVQSVQILNQKGKQKRFGRFMGRRNHVKKAYVSLKP 93
>sp|Q46WE6|RL23_CUPPJ 50S ribosomal protein L23 OS=Cupriavidus pinatubonensis (strain
JMP134 / LMG 1197) GN=rplW PE=3 SV=1
Length = 104
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 69 EVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVTSPP 104
EV + LN+ GK+K++G + + KKAYV+ P
Sbjct: 58 EVQSVQILNQKGKQKRFGRFMGRRNHVKKAYVSLKP 93
>sp|Q0K621|RL23_CUPNH 50S ribosomal protein L23 OS=Cupriavidus necator (strain ATCC 17699
/ H16 / DSM 428 / Stanier 337) GN=rplW PE=3 SV=1
Length = 104
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 69 EVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVTSPP 104
EV + LN+ GK+K++G + + KKAYV+ P
Sbjct: 58 EVQSVQILNQKGKQKRFGRFMGRRNHVKKAYVSLKP 93
>sp|Q2NQM4|RL23_SODGM 50S ribosomal protein L23 OS=Sodalis glossinidius (strain
morsitans) GN=rplW PE=3 SV=1
Length = 100
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 57 EIAAKTIPSNGFEVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVT 101
EI A EV++ RTL GK K+ G + + D+KKAYVT
Sbjct: 42 EIKAAVHKLFEVEVNDVRTLVVKGKTKRHGQRIGRRSDWKKAYVT 86
>sp|Q6MSM7|RL23_MYCMS 50S ribosomal protein L23 OS=Mycoplasma mycoides subsp. mycoides SC
(strain PG1) GN=rplW PE=3 SV=1
Length = 94
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 10/57 (17%)
Query: 45 KLLMPNTFQNIKEIAAKTIPSNGFEVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVT 101
K+ + TF+ I E+ +V+ RT+N K+K+ G + KP YKKA +T
Sbjct: 35 KVQIKKTFEEIFEV----------KVESVRTINYDAKEKRLGKYVGKKPSYKKAIIT 81
>sp|P10140|RL23_MYCCT 50S ribosomal protein L23 OS=Mycoplasma capricolum subsp.
capricolum (strain California kid / ATCC 27343 / NCTC
10154) GN=rplW PE=3 SV=1
Length = 94
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 10/57 (17%)
Query: 45 KLLMPNTFQNIKEIAAKTIPSNGFEVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVT 101
K+ + TF+ I E+ +V+ RT+N K+K+ G + KP YKKA +T
Sbjct: 35 KVQIKKTFEEIFEV----------KVESVRTINYDAKEKRLGKYVGKKPSYKKAIIT 81
>sp|A4JAP2|RL23_BURVG 50S ribosomal protein L23 OS=Burkholderia vietnamiensis (strain G4
/ LMG 22486) GN=rplW PE=3 SV=1
Length = 104
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 69 EVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVTSPP 104
EVD L + GK+K++G + + D KKAYV P
Sbjct: 58 EVDSVNVLVQKGKQKRFGRSMGRRKDVKKAYVCLKP 93
>sp|Q2SU29|RL23_BURTA 50S ribosomal protein L23 OS=Burkholderia thailandensis (strain
E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=rplW
PE=3 SV=1
Length = 104
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 69 EVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVTSPP 104
EVD L + GK+K++G + + D KKAYV P
Sbjct: 58 EVDSVNVLVQKGKQKRFGRSMGRRKDVKKAYVCLKP 93
>sp|Q39KG5|RL23_BURS3 50S ribosomal protein L23 OS=Burkholderia sp. (strain 383) GN=rplW
PE=3 SV=1
Length = 104
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 69 EVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVTSPP 104
EVD L + GK+K++G + + D KKAYV P
Sbjct: 58 EVDSVNVLVQKGKQKRFGRSMGRRKDVKKAYVCLKP 93
>sp|Q63Q13|RL23_BURPS 50S ribosomal protein L23 OS=Burkholderia pseudomallei (strain
K96243) GN=rplW PE=3 SV=1
Length = 104
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 69 EVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVTSPP 104
EVD L + GK+K++G + + D KKAYV P
Sbjct: 58 EVDSVNVLVQKGKQKRFGRSMGRRKDVKKAYVCLKP 93
>sp|A3NEH7|RL23_BURP6 50S ribosomal protein L23 OS=Burkholderia pseudomallei (strain 668)
GN=rplW PE=3 SV=1
Length = 104
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 69 EVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVTSPP 104
EVD L + GK+K++G + + D KKAYV P
Sbjct: 58 EVDSVNVLVQKGKQKRFGRSMGRRKDVKKAYVCLKP 93
>sp|Q3JMR5|RL23_BURP1 50S ribosomal protein L23 OS=Burkholderia pseudomallei (strain
1710b) GN=rplW PE=3 SV=1
Length = 104
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 69 EVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVTSPP 104
EVD L + GK+K++G + + D KKAYV P
Sbjct: 58 EVDSVNVLVQKGKQKRFGRSMGRRKDVKKAYVCLKP 93
>sp|A3P0B1|RL23_BURP0 50S ribosomal protein L23 OS=Burkholderia pseudomallei (strain
1106a) GN=rplW PE=3 SV=1
Length = 104
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 69 EVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVTSPP 104
EVD L + GK+K++G + + D KKAYV P
Sbjct: 58 EVDSVNVLVQKGKQKRFGRSMGRRKDVKKAYVCLKP 93
>sp|A1V8A1|RL23_BURMS 50S ribosomal protein L23 OS=Burkholderia mallei (strain SAVP1)
GN=rplW PE=3 SV=1
Length = 104
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 69 EVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVTSPP 104
EVD L + GK+K++G + + D KKAYV P
Sbjct: 58 EVDSVNVLVQKGKQKRFGRSMGRRKDVKKAYVCLKP 93
>sp|Q62GK7|RL23_BURMA 50S ribosomal protein L23 OS=Burkholderia mallei (strain ATCC
23344) GN=rplW PE=3 SV=1
Length = 104
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 69 EVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVTSPP 104
EVD L + GK+K++G + + D KKAYV P
Sbjct: 58 EVDSVNVLVQKGKQKRFGRSMGRRKDVKKAYVCLKP 93
>sp|A2S7H8|RL23_BURM9 50S ribosomal protein L23 OS=Burkholderia mallei (strain NCTC
10229) GN=rplW PE=3 SV=1
Length = 104
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 69 EVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVTSPP 104
EVD L + GK+K++G + + D KKAYV P
Sbjct: 58 EVDSVNVLVQKGKQKRFGRSMGRRKDVKKAYVCLKP 93
>sp|A3MRV6|RL23_BURM7 50S ribosomal protein L23 OS=Burkholderia mallei (strain NCTC
10247) GN=rplW PE=3 SV=1
Length = 104
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 69 EVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVTSPP 104
EVD L + GK+K++G + + D KKAYV P
Sbjct: 58 EVDSVNVLVQKGKQKRFGRSMGRRKDVKKAYVCLKP 93
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.129 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,036,759
Number of Sequences: 539616
Number of extensions: 1628271
Number of successful extensions: 3344
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 3151
Number of HSP's gapped (non-prelim): 211
length of query: 116
length of database: 191,569,459
effective HSP length: 84
effective length of query: 32
effective length of database: 146,241,715
effective search space: 4679734880
effective search space used: 4679734880
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)