Query 044569
Match_columns 116
No_of_seqs 138 out of 1052
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 07:34:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044569.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044569hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tve_T 50S ribosomal protein L 99.9 2.5E-24 8.6E-29 150.0 7.1 73 22-110 4-89 (92)
2 3r8s_T 50S ribosomal protein L 99.9 1.2E-23 4.2E-28 146.8 5.9 73 21-108 8-93 (93)
3 2zjr_Q 50S ribosomal protein L 99.9 2.3E-23 7.7E-28 145.9 3.7 74 22-111 5-91 (95)
4 1vq8_S 50S ribosomal protein L 99.7 3.8E-17 1.3E-21 112.4 3.8 62 22-111 4-79 (85)
5 2zkr_s 60S ribosomal protein L 99.6 8.4E-16 2.9E-20 116.0 3.3 62 22-111 75-150 (156)
6 3j21_T 50S ribosomal protein L 99.6 3.8E-15 1.3E-19 102.7 5.7 62 22-111 5-80 (86)
7 3bbo_V Ribosomal protein L23; 99.5 2E-15 7E-20 117.4 0.2 62 22-111 113-188 (198)
8 3u5e_X 60S ribosomal protein L 99.5 1.5E-14 5.1E-19 107.9 2.6 63 21-111 60-136 (142)
9 3iz5_X 60S ribosomal protein L 99.4 3.8E-14 1.3E-18 106.6 2.8 63 21-111 70-146 (152)
10 4a17_R RPL23A, 60S ribosomal p 99.4 1.7E-13 5.8E-18 103.0 4.9 63 21-111 68-144 (150)
11 2xsk_A CSGC; chaperone; 1.70A 32.9 31 0.0011 24.4 2.8 22 91-112 72-93 (110)
12 1s21_A ORF2; predominantly bet 21.2 50 0.0017 25.6 2.3 18 96-113 188-205 (206)
No 1
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=99.90 E-value=2.5e-24 Score=150.05 Aligned_cols=73 Identities=26% Similarity=0.370 Sum_probs=68.4
Q ss_pred eeEEecccchhccceeeecCcceeeecCCCccCCCeEEEEEcCCC-------------CCeEeeEEEEeeCCcccccCCe
Q 044569 22 EWEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSN-------------GFEVDEARTLNKGGKKKKWGGL 88 (116)
Q Consensus 22 ~~~~~~~~~~~~~~~vf~pn~~lklv~p~t~~~~Nqy~F~V~~~A-------------~VkV~~VnTlnv~GK~KR~g~~ 88 (116)
.++++|.+||++... .++ |+|+|.|+++| ||+|.+|||++++||.||+|++
T Consensus 4 ~iI~~P~iTEKa~~~---------------~e~-n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK~kR~g~~ 67 (92)
T 3tve_T 4 DVILAPVLSEKAYAG---------------FAE-GKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGRY 67 (92)
T ss_dssp HHEEEECCSHHHHTT---------------TTT-TEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCCEEESSSC
T ss_pred heecccccCHHHHHH---------------hhC-CEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCceeeeccc
Confidence 357889999998887 666 99999999999 9999999999999999999999
Q ss_pred eeecCCeeEEEEEcCCCCEEee
Q 044569 89 LNAKPDYKKAYVTSPPRTRFRC 110 (116)
Q Consensus 89 ~Gk~~~yKKAyVTL~~G~~Idf 110 (116)
.|++++||||||||++|++|||
T Consensus 68 ~G~~~~~KKA~VtL~~g~~Id~ 89 (92)
T 3tve_T 68 LGKRPDRKKAIVQVAPGQKIEA 89 (92)
T ss_dssp EEECCCEEEEEEEECTTCCCTT
T ss_pred cccCCCceEEEEEcCCCCcccC
Confidence 9999999999999999999997
No 2
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=99.89 E-value=1.2e-23 Score=146.79 Aligned_cols=73 Identities=25% Similarity=0.312 Sum_probs=68.5
Q ss_pred eeeEEecccchhccceeeecCcceeeecCCCccCCCeEEEEEcCCC-------------CCeEeeEEEEeeCCcccccCC
Q 044569 21 TEWEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSN-------------GFEVDEARTLNKGGKKKKWGG 87 (116)
Q Consensus 21 ~~~~~~~~~~~~~~~~vf~pn~~lklv~p~t~~~~Nqy~F~V~~~A-------------~VkV~~VnTlnv~GK~KR~g~ 87 (116)
..++++|.+||++..+ .++.|+|+|.||++| ||+|.+|||++++||.||+|+
T Consensus 8 ~~iIk~P~iTEKa~~~---------------~e~~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~kR~g~ 72 (93)
T 3r8s_T 8 LKVLRAPHVSEKASTA---------------MEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQ 72 (93)
T ss_dssp HHHEEEECCSHHHHHH---------------HHTTSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCBCCSSS
T ss_pred HhhhhccccCHHHHHH---------------HHhCCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCceeeeCC
Confidence 4578899999999888 677899999999999 999999999999999999999
Q ss_pred eeeecCCeeEEEEEcCCCCEE
Q 044569 88 LLNAKPDYKKAYVTSPPRTRF 108 (116)
Q Consensus 88 ~~Gk~~~yKKAyVTL~~G~~I 108 (116)
+.|++++||||||||++|++|
T Consensus 73 ~~G~~~~~KKAiVtL~~g~~I 93 (93)
T 3r8s_T 73 RIGRRSDWKKAYVTLKEGQNL 93 (93)
T ss_dssp SCCBCCCEEEEEEECCSCCCC
T ss_pred ccccCCCcEEEEEEcCCcCCC
Confidence 999999999999999999986
No 3
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=99.87 E-value=2.3e-23 Score=145.94 Aligned_cols=74 Identities=22% Similarity=0.211 Sum_probs=67.4
Q ss_pred eeEEecccchhccceeeecCcceeeecCCCccCCCeEEEEEcCCC-------------CCeEeeEEEEeeCCcccccCCe
Q 044569 22 EWEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSN-------------GFEVDEARTLNKGGKKKKWGGL 88 (116)
Q Consensus 22 ~~~~~~~~~~~~~~~vf~pn~~lklv~p~t~~~~Nqy~F~V~~~A-------------~VkV~~VnTlnv~GK~KR~g~~ 88 (116)
.++++|.+||++... .+ .|+|+|.|+++| ||+|.+|||+|++||.||.|++
T Consensus 5 ~iI~~PviTEKs~~~---------------~e-~n~y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~gK~kR~g~~ 68 (95)
T 2zjr_Q 5 DILQAPVISEKAYSA---------------ME-RGVYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGKRKRVGRF 68 (95)
T ss_dssp SSCCEECCTHHHHHH---------------HT-TTCCEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCCCCSSSSC
T ss_pred hceeccccCHHHHHH---------------HH-CCEEEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCCccceeccc
Confidence 466788888888876 44 477999999999 9999999999999999999999
Q ss_pred eeecCCeeEEEEEcCCCCEEeee
Q 044569 89 LNAKPDYKKAYVTSPPRTRFRCG 111 (116)
Q Consensus 89 ~Gk~~~yKKAyVTL~~G~~Idf~ 111 (116)
.|++++||||||||++|++|||.
T Consensus 69 ~G~~~~~KKAiVtL~~g~~id~~ 91 (95)
T 2zjr_Q 69 IGQRNDRKKAIVRLAEGQSIEAL 91 (95)
T ss_dssp CCCCCCBEEEEEECCSSCCCSST
T ss_pred cccCCCcEEEEEEeCCCCeeecc
Confidence 99999999999999999999985
No 4
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=99.66 E-value=3.8e-17 Score=112.41 Aligned_cols=62 Identities=15% Similarity=0.062 Sum_probs=56.1
Q ss_pred eeEEecccchhccceeeecCcceeeecCCCccCCCeEEEEEcCCC-------------CCeEeeEEEEeeCCcccccCCe
Q 044569 22 EWEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSN-------------GFEVDEARTLNKGGKKKKWGGL 88 (116)
Q Consensus 22 ~~~~~~~~~~~~~~~vf~pn~~lklv~p~t~~~~Nqy~F~V~~~A-------------~VkV~~VnTlnv~GK~KR~g~~ 88 (116)
.+..+|.+||++... .++.|+|+|.|+++| ||+|.+|||++++
T Consensus 4 ~iIk~P~iTEKa~~~---------------~e~~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~--------- 59 (85)
T 1vq8_S 4 DVIKHPHVTEKAMND---------------MDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTM--------- 59 (85)
T ss_dssp CSEEEECCSHHHHHH---------------HHHSCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT---------
T ss_pred ceeeccccCHHHHHH---------------HHhCCEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecC---------
Confidence 467889999999888 777899999999999 9999999999986
Q ss_pred eeecCCeeEEEEEcCCCCE-Eeee
Q 044569 89 LNAKPDYKKAYVTSPPRTR-FRCG 111 (116)
Q Consensus 89 ~Gk~~~yKKAyVTL~~G~~-Idf~ 111 (116)
++||||||||++|++ ||+.
T Consensus 60 ----~~~KKA~VtL~~g~~aid~~ 79 (85)
T 1vq8_S 60 ----DGEKKAVVRLSEDDDAQEVA 79 (85)
T ss_dssp ----TSSEEEEEEECTTSCHHHHH
T ss_pred ----CCceEEEEEECCCCcHHHHH
Confidence 369999999999998 9875
No 5
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.57 E-value=8.4e-16 Score=116.05 Aligned_cols=62 Identities=19% Similarity=0.140 Sum_probs=51.2
Q ss_pred eeEEecccchhccceeeecCcceeeecCCCccCCCeEEEEEcCCC-------------CCeEeeEEEEeeCCcccccCCe
Q 044569 22 EWEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSN-------------GFEVDEARTLNKGGKKKKWGGL 88 (116)
Q Consensus 22 ~~~~~~~~~~~~~~~vf~pn~~lklv~p~t~~~~Nqy~F~V~~~A-------------~VkV~~VnTlnv~GK~KR~g~~ 88 (116)
.++++|.+||++... .++.|+|+|.||++| ||+|.+|||+|++|
T Consensus 75 ~iIk~PliTEKa~~~---------------~E~~n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-------- 131 (156)
T 2zkr_s 75 AIIKFPLTTESAMKK---------------IEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPD-------- 131 (156)
T ss_dssp -CEEEECCSHHHHHH---------------HHHHCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSS--------
T ss_pred HhHhcccccHHHHHH---------------HHhCCcEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCC--------
Confidence 455555555555555 566799999999999 99999999999987
Q ss_pred eeecCCeeEEEEEcCCCCE-Eeee
Q 044569 89 LNAKPDYKKAYVTSPPRTR-FRCG 111 (116)
Q Consensus 89 ~Gk~~~yKKAyVTL~~G~~-Idf~ 111 (116)
+||||||+|++|++ |||.
T Consensus 132 -----~~KKAiVtL~~g~~aid~~ 150 (156)
T 2zkr_s 132 -----GEKKAYVRLAPDYDALDVA 150 (156)
T ss_dssp -----SCEEEEEEECTTSCHHHHH
T ss_pred -----CceEEEEEECCCCcHHHHH
Confidence 59999999999987 9875
No 6
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.56 E-value=3.8e-15 Score=102.67 Aligned_cols=62 Identities=21% Similarity=0.181 Sum_probs=54.1
Q ss_pred eeEEecccchhccceeeecCcceeeecCCCccCCCeEEEEEcCCC-------------CCeEeeEEEEeeCCcccccCCe
Q 044569 22 EWEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSN-------------GFEVDEARTLNKGGKKKKWGGL 88 (116)
Q Consensus 22 ~~~~~~~~~~~~~~~vf~pn~~lklv~p~t~~~~Nqy~F~V~~~A-------------~VkV~~VnTlnv~GK~KR~g~~ 88 (116)
.+..+|.+||++... .++.|+|+|.|+++| ||+|.+|||++++
T Consensus 5 ~iIk~P~iTEKa~~~---------------~e~~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~--------- 60 (86)
T 3j21_T 5 KVIIRPVVTEKAISL---------------IEKENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP--------- 60 (86)
T ss_dssp CCEEECCCSHHHHHH---------------HHTSCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECT---------
T ss_pred HhhhccccCHHHHHH---------------HHhCCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC---------
Confidence 467889999998887 677899999999999 9999999999986
Q ss_pred eeecCCeeEEEEEcCCCCE-Eeee
Q 044569 89 LNAKPDYKKAYVTSPPRTR-FRCG 111 (116)
Q Consensus 89 ~Gk~~~yKKAyVTL~~G~~-Idf~ 111 (116)
++||||||+|++|++ +|++
T Consensus 61 ----~~~KKA~V~L~~~~~a~dva 80 (86)
T 3j21_T 61 ----RGEKKAYVKLKPEYSASEVA 80 (86)
T ss_dssp ----TSCEEEEEEECTTSCHHHHH
T ss_pred ----CCceEEEEEcCCCCcHHHHH
Confidence 469999999999976 5543
No 7
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=99.49 E-value=2e-15 Score=117.45 Aligned_cols=62 Identities=19% Similarity=0.126 Sum_probs=52.2
Q ss_pred eeEEecccchhccceeeecCcceeeecCCCccCCCeEEEEEcCCC-------------CCeEeeEEEEeeCCcccccCCe
Q 044569 22 EWEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSN-------------GFEVDEARTLNKGGKKKKWGGL 88 (116)
Q Consensus 22 ~~~~~~~~~~~~~~~vf~pn~~lklv~p~t~~~~Nqy~F~V~~~A-------------~VkV~~VnTlnv~GK~KR~g~~ 88 (116)
.++++|.+||++... .++.|+|+|.||++| ||+|.+|||++++|
T Consensus 113 dIIk~PvITEKAmkl---------------iE~nNkyvF~Vd~kANK~QIKqAVEkLFdVKV~kVNTln~~g-------- 169 (198)
T 3bbo_V 113 QILQSPIITEAAIKN---------------IADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPD-------- 169 (198)
T ss_dssp CCBCCCCCCHHHHHH---------------HHTSCEECCEECTTCCHHHHHHTTTTTSCCCEEECCCEEETT--------
T ss_pred heeeccccCHHHHHH---------------HHhCCEEEEEECCCCCHHHHHHHHHHHhCCceeEEEeeEcCC--------
Confidence 455566666666555 567799999999999 99999999999998
Q ss_pred eeecCCeeEEEEEcCCCCE-Eeee
Q 044569 89 LNAKPDYKKAYVTSPPRTR-FRCG 111 (116)
Q Consensus 89 ~Gk~~~yKKAyVTL~~G~~-Idf~ 111 (116)
+||||||+|++|++ ||+.
T Consensus 170 -----g~KKAyVtLaeG~~AID~a 188 (198)
T 3bbo_V 170 -----GTKKAYIMLNKEYNASELA 188 (198)
T ss_dssp -----TEEECCEEECTTTCTTTHH
T ss_pred -----CeEEEEEEeCCCCchHHHH
Confidence 59999999999988 9875
No 8
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=99.46 E-value=1.5e-14 Score=107.85 Aligned_cols=63 Identities=16% Similarity=0.076 Sum_probs=53.2
Q ss_pred eeeEEecccchhccceeeecCcceeeecCCCccCCCeEEEEEcCCC-------------CCeEeeEEEEeeCCcccccCC
Q 044569 21 TEWEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSN-------------GFEVDEARTLNKGGKKKKWGG 87 (116)
Q Consensus 21 ~~~~~~~~~~~~~~~~vf~pn~~lklv~p~t~~~~Nqy~F~V~~~A-------------~VkV~~VnTlnv~GK~KR~g~ 87 (116)
-.+++.|.+||++... .++.|+|+|.||++| ||+|.+|||++++|
T Consensus 60 ~~IIk~PliTEKa~~~---------------~E~~N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~------- 117 (142)
T 3u5e_X 60 YKVIEQPITSETAMKK---------------VEDGNILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPN------- 117 (142)
T ss_dssp HHHEEEECCCHHHHHH---------------HHHHCEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTT-------
T ss_pred HHhhhcCCcCHHHHHH---------------HHhCCEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-------
Confidence 3566777777777666 566799999999999 99999999999975
Q ss_pred eeeecCCeeEEEEEcCCCC-EEeee
Q 044569 88 LLNAKPDYKKAYVTSPPRT-RFRCG 111 (116)
Q Consensus 88 ~~Gk~~~yKKAyVTL~~G~-~Idf~ 111 (116)
+||||||+|++|+ .||++
T Consensus 118 ------g~KKAyV~L~~~~daldvA 136 (142)
T 3u5e_X 118 ------GTKKAYVRLTADYDALDIA 136 (142)
T ss_dssp ------SCEEEEEEECTTCCHHHHH
T ss_pred ------CceEEEEEeCCCCcHHHHH
Confidence 7999999999996 48765
No 9
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=99.43 E-value=3.8e-14 Score=106.64 Aligned_cols=63 Identities=17% Similarity=0.121 Sum_probs=52.8
Q ss_pred eeeEEecccchhccceeeecCcceeeecCCCccCCCeEEEEEcCCC-------------CCeEeeEEEEeeCCcccccCC
Q 044569 21 TEWEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSN-------------GFEVDEARTLNKGGKKKKWGG 87 (116)
Q Consensus 21 ~~~~~~~~~~~~~~~~vf~pn~~lklv~p~t~~~~Nqy~F~V~~~A-------------~VkV~~VnTlnv~GK~KR~g~ 87 (116)
-.+++.|.+||++... .++.|+|+|.||++| ||+|.+|||++++
T Consensus 70 ~~IIk~PliTEKa~~~---------------~E~~N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~-------- 126 (152)
T 3iz5_X 70 YQILKYPLTTESAMKK---------------IEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRP-------- 126 (152)
T ss_dssp CCSEEEECCSHHHHHH---------------HHHHSEEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECT--------
T ss_pred HHHHhhCCcCHHHHHH---------------HHhCCEEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcC--------
Confidence 3566777777777666 566799999999999 9999999999975
Q ss_pred eeeecCCeeEEEEEcCCCC-EEeee
Q 044569 88 LLNAKPDYKKAYVTSPPRT-RFRCG 111 (116)
Q Consensus 88 ~~Gk~~~yKKAyVTL~~G~-~Idf~ 111 (116)
++||||||+|++|+ .||++
T Consensus 127 -----~g~KKAyV~L~~~~daldvA 146 (152)
T 3iz5_X 127 -----DGKKKAYVKLTPDYDALDVA 146 (152)
T ss_dssp -----TSSEEEEEEECTTSCHHHHH
T ss_pred -----CCceEEEEEcCCCCcHHHHH
Confidence 47999999999995 48875
No 10
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=99.40 E-value=1.7e-13 Score=102.96 Aligned_cols=63 Identities=17% Similarity=0.126 Sum_probs=53.3
Q ss_pred eeeEEecccchhccceeeecCcceeeecCCCccCCCeEEEEEcCCC-------------CCeEeeEEEEeeCCcccccCC
Q 044569 21 TEWEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSN-------------GFEVDEARTLNKGGKKKKWGG 87 (116)
Q Consensus 21 ~~~~~~~~~~~~~~~~vf~pn~~lklv~p~t~~~~Nqy~F~V~~~A-------------~VkV~~VnTlnv~GK~KR~g~ 87 (116)
-.+++.|.+||++... .++.|+|+|.||++| ||+|.+|||++++|
T Consensus 68 y~IIk~PliTEKa~~~---------------~E~~N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~------- 125 (150)
T 4a17_R 68 HSVVKTPLTTEKAMKK---------------MEDENTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTIT------- 125 (150)
T ss_dssp HHHEEEECCSHHHHHH---------------HHHSSEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-------
T ss_pred HHhhhccccCHHHHHH---------------HHhCCEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-------
Confidence 3567777777777666 677899999999999 99999999999975
Q ss_pred eeeecCCeeEEEEEcCCCC-EEeee
Q 044569 88 LLNAKPDYKKAYVTSPPRT-RFRCG 111 (116)
Q Consensus 88 ~~Gk~~~yKKAyVTL~~G~-~Idf~ 111 (116)
+||||||+|++|+ .||++
T Consensus 126 ------g~KKAyV~La~~~dAldvA 144 (150)
T 4a17_R 126 ------GNKKAYIRLAADSDSLTLA 144 (150)
T ss_dssp ------SCEEEEEEECSSSCHHHHH
T ss_pred ------CcEEEEEEcCCCCcHHHHH
Confidence 6999999999995 47765
No 11
>2xsk_A CSGC; chaperone; 1.70A {Escherichia coli} PDB: 2y2y_A 2y2t_A
Probab=32.87 E-value=31 Score=24.37 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=16.7
Q ss_pred ecCCeeEEEEEcCCCCEEeeee
Q 044569 91 AKPDYKKAYVTSPPRTRFRCGR 112 (116)
Q Consensus 91 k~~~yKKAyVTL~~G~~Idf~~ 112 (116)
.-.|+=|-+||+.+|+++-|.+
T Consensus 72 ~~~D~vkIiVTVSDG~slhLsq 93 (110)
T 2xsk_A 72 SPDDRVKIVVTVSDGQSLHLSQ 93 (110)
T ss_dssp CTTCEEEEEEEEECSSSCEEEE
T ss_pred cCCCcEEEEEEEeCCCeEEEEe
Confidence 4567888888888888877655
No 12
>1s21_A ORF2; predominantly beta-strand, chaperone; 2.00A {Pseudomonas syringae PV} SCOP: d.166.1.4
Probab=21.24 E-value=50 Score=25.61 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=15.2
Q ss_pred eEEEEEcCCCCEEeeeee
Q 044569 96 KKAYVTSPPRTRFRCGRI 113 (116)
Q Consensus 96 KKAyVTL~~G~~Idf~~~ 113 (116)
.--||||.+|.++++.-|
T Consensus 188 ~~LIVTLP~g~kVpv~Ii 205 (206)
T 1s21_A 188 EALIVTLPKGRKVPVNIL 205 (206)
T ss_dssp EEEEEECCTTCEEECEEC
T ss_pred ceEEEECCCCcccceeec
Confidence 667999999999998754
Done!