Query 044569
Match_columns 116
No_of_seqs 138 out of 1052
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 07:34:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044569.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044569hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2zjrq1 d.12.1.1 (Q:2-94) Ribo 99.9 2E-24 1.5E-28 149.0 3.6 74 22-111 4-90 (93)
2 d2qamt1 d.12.1.1 (T:1-93) Ribo 99.9 3.2E-24 2.4E-28 147.8 0.6 72 22-108 9-93 (93)
3 d2j01x1 d.12.1.1 (X:3-95) Ribo 99.9 8.3E-25 6E-29 150.7 -2.9 73 22-110 4-89 (93)
4 d1vqos1 d.12.1.1 (S:1-81) Ribo 99.6 9.8E-16 7.1E-20 103.0 3.9 62 22-111 3-78 (81)
5 d1i8da1 b.43.4.3 (A:1-93) Ribo 34.2 8.5 0.00062 23.9 1.7 14 102-115 36-49 (93)
6 d1kzla1 b.43.4.3 (A:1-92) Ribo 34.0 8.6 0.00063 23.7 1.7 14 102-115 36-49 (92)
7 d1i8da2 b.43.4.3 (A:94-206) Ri 26.2 14 0.001 23.7 1.7 14 102-115 41-54 (113)
8 d1twfc2 d.181.1.1 (C:42-172) R 20.6 32 0.0023 21.8 2.7 17 98-114 102-118 (131)
9 d1kzla2 b.43.4.3 (A:93-202) Ri 17.1 28 0.002 22.1 1.7 14 102-115 42-55 (110)
10 d1xe0a_ b.121.3.1 (A:) Nucleop 16.9 49 0.0036 21.4 2.9 16 67-82 46-61 (108)
No 1
>d2zjrq1 d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococcus radiodurans [TaxId: 1299]}
Probab=99.89 E-value=2e-24 Score=149.02 Aligned_cols=74 Identities=22% Similarity=0.207 Sum_probs=67.9
Q ss_pred eeEEecccchhccceeeecCcceeeecCCCccCCCeEEEEEcCCC-------------CCeEeeEEEEeeCCcccccCCe
Q 044569 22 EWEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSN-------------GFEVDEARTLNKGGKKKKWGGL 88 (116)
Q Consensus 22 ~~~~~~~~~~~~~~~vf~pn~~lklv~p~t~~~~Nqy~F~V~~~A-------------~VkV~~VnTlnv~GK~KR~g~~ 88 (116)
+++++|.+||++... . +.|+|+|+|+++| ||+|.+|||+|++||.||+|+.
T Consensus 4 dvi~~P~iTEKs~~~---------------~-e~n~y~F~V~~~atK~~Ik~ave~lf~VkV~~Vnt~~~~gK~kr~~~~ 67 (93)
T d2zjrq1 4 DILQAPVISEKAYSA---------------M-ERGVYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGKRKRVGRF 67 (93)
T ss_dssp SSCCEECCTHHHHHH---------------H-TTTCCEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCCCCSSSSC
T ss_pred cEEeecccCHHHHHH---------------H-HCCEEEEEEeCCCCHHHHHHHHHHHcCCCeEEEEEEEeCCCceEECCc
Confidence 356788899998876 4 4699999999999 9999999999999999999999
Q ss_pred eeecCCeeEEEEEcCCCCEEeee
Q 044569 89 LNAKPDYKKAYVTSPPRTRFRCG 111 (116)
Q Consensus 89 ~Gk~~~yKKAyVTL~~G~~Idf~ 111 (116)
.|++++||||||||++|++|||-
T Consensus 68 ~g~~~~~KKAiVtL~~g~~I~~~ 90 (93)
T d2zjrq1 68 IGQRNDRKKAIVRLAEGQSIEAL 90 (93)
T ss_dssp CCCCCCBEEEEEECCSSCCCSST
T ss_pred ceecCCCEEEEEEcCCcCccccc
Confidence 99999999999999999999973
No 2
>d2qamt1 d.12.1.1 (T:1-93) Ribosomal protein L23 {Escherichia coli [TaxId: 562]}
Probab=99.87 E-value=3.2e-24 Score=147.83 Aligned_cols=72 Identities=25% Similarity=0.322 Sum_probs=68.0
Q ss_pred eeEEecccchhccceeeecCcceeeecCCCccCCCeEEEEEcCCC-------------CCeEeeEEEEeeCCcccccCCe
Q 044569 22 EWEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSN-------------GFEVDEARTLNKGGKKKKWGGL 88 (116)
Q Consensus 22 ~~~~~~~~~~~~~~~vf~pn~~lklv~p~t~~~~Nqy~F~V~~~A-------------~VkV~~VnTlnv~GK~KR~g~~ 88 (116)
.++++|.+||++... .+..|+|+|+|+++| ||+|.+|||+|++||.||+|+.
T Consensus 9 ~ii~~PviTEKs~~~---------------~e~~n~ytF~V~~~AtK~eIK~ave~~f~VkV~~Vnt~~~~gK~kr~~~~ 73 (93)
T d2qamt1 9 KVLRAPHVSEKASTA---------------MEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQR 73 (93)
T ss_dssp CCEEEECCCHHHHTH---------------HHHSSCCCEEECSSCCSHHHHHHHHHTTCCCCCCCCCEEECCCEECSTTC
T ss_pred HHHhccccCHHHHHh---------------HhhCCEEEEEECCCCCHHHHHHHHHHHhCCcceEEEEEEeCCceeEeCCc
Confidence 578899999998877 777899999999999 9999999999999999999999
Q ss_pred eeecCCeeEEEEEcCCCCEE
Q 044569 89 LNAKPDYKKAYVTSPPRTRF 108 (116)
Q Consensus 89 ~Gk~~~yKKAyVTL~~G~~I 108 (116)
.|++++||||||||++|++|
T Consensus 74 ~g~~~~~KKAiVtL~~g~~I 93 (93)
T d2qamt1 74 IGRRSDWKKAYVTLKEGQNL 93 (93)
T ss_dssp CEECCCEEECCCCCSSCCCC
T ss_pred ccccCCCEEEEEEcCCCCcC
Confidence 99999999999999999987
No 3
>d2j01x1 d.12.1.1 (X:3-95) Ribosomal protein L23 {Thermus thermophilus [TaxId: 274]}
Probab=99.87 E-value=8.3e-25 Score=150.71 Aligned_cols=73 Identities=26% Similarity=0.354 Sum_probs=67.9
Q ss_pred eeEEecccchhccceeeecCcceeeecCCCccCCCeEEEEEcCCC-------------CCeEeeEEEEeeCCcccccCCe
Q 044569 22 EWEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSN-------------GFEVDEARTLNKGGKKKKWGGL 88 (116)
Q Consensus 22 ~~~~~~~~~~~~~~~vf~pn~~lklv~p~t~~~~Nqy~F~V~~~A-------------~VkV~~VnTlnv~GK~KR~g~~ 88 (116)
+++++|.+||++... .+ .|+|+|+|+++| ||+|.+|||+|++||.||+|+.
T Consensus 4 dvi~~PiiTEKs~~l---------------~e-~n~y~F~V~~~atK~eIK~ave~~f~VkV~~Vnt~~~~gK~kr~~~~ 67 (93)
T d2j01x1 4 DVILAPVLSEKAYAG---------------FA-EGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGRY 67 (93)
T ss_dssp TTCCEECCSHHHHHH---------------HT-SSCCCEECCSSSCCTTCHHHHTTTTTCCCCCBCCCCCCCCCCSSCCC
T ss_pred heeeccccCHhHhhh---------------Hh-CCeEEEEEeCCCCHHHHHHHHHHHhCCCeeEEEEEEeCCceeEeCCc
Confidence 567889999998776 44 699999999999 9999999999999999999999
Q ss_pred eeecCCeeEEEEEcCCCCEEee
Q 044569 89 LNAKPDYKKAYVTSPPRTRFRC 110 (116)
Q Consensus 89 ~Gk~~~yKKAyVTL~~G~~Idf 110 (116)
.|++++||||||+|++|++|||
T Consensus 68 ~g~~~~~KKA~V~L~~g~~I~~ 89 (93)
T d2j01x1 68 LGKRPDRKKAIVQVAPGQKIEA 89 (93)
T ss_dssp CSCCCCBCCBCCSTTTCCSSSS
T ss_pred ccccCCCEEEEEEcCCcCEecc
Confidence 9999999999999999999996
No 4
>d1vqos1 d.12.1.1 (S:1-81) Ribosomal protein L23 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=99.55 E-value=9.8e-16 Score=103.00 Aligned_cols=62 Identities=15% Similarity=0.060 Sum_probs=54.6
Q ss_pred eeEEecccchhccceeeecCcceeeecCCCccCCCeEEEEEcCCC-------------CCeEeeEEEEeeCCcccccCCe
Q 044569 22 EWEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIKEIAAKTIPSN-------------GFEVDEARTLNKGGKKKKWGGL 88 (116)
Q Consensus 22 ~~~~~~~~~~~~~~~vf~pn~~lklv~p~t~~~~Nqy~F~V~~~A-------------~VkV~~VnTlnv~GK~KR~g~~ 88 (116)
+++++|.+||++... .+..|+|+|.|+++| ||+|.+|||++.+|+
T Consensus 3 ~iI~~P~iTEKs~~~---------------~e~~n~y~F~V~~~A~K~~IK~AVe~lf~VkV~~Vnt~~~~~~------- 60 (81)
T d1vqos1 3 DVIKHPHVTEKAMND---------------MDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDG------- 60 (81)
T ss_dssp CSEEEECCSHHHHHH---------------HHHSCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTS-------
T ss_pred ceeeccccCHHHHHH---------------HHhCCEEEEEEcCcCCHHHHHHHHHHHcCCceeEEEEeEcCCC-------
Confidence 568899999998877 677899999999999 999999999998765
Q ss_pred eeecCCeeEEEEEcCCCCE-Eeee
Q 044569 89 LNAKPDYKKAYVTSPPRTR-FRCG 111 (116)
Q Consensus 89 ~Gk~~~yKKAyVTL~~G~~-Idf~ 111 (116)
+|||||+|++|++ +|++
T Consensus 61 ------~KkA~V~L~~~~~a~dia 78 (81)
T d1vqos1 61 ------EKKAVVRLSEDDDAQEVA 78 (81)
T ss_dssp ------SEEEEEEECTTSCHHHHH
T ss_pred ------cEEEEEEeCCCCcHHHHH
Confidence 4999999999986 6664
No 5
>d1i8da1 b.43.4.3 (A:1-93) Riboflavin synthase {Escherichia coli [TaxId: 562]}
Probab=34.23 E-value=8.5 Score=23.93 Aligned_cols=14 Identities=14% Similarity=0.214 Sum_probs=12.6
Q ss_pred cCCCCEEeeeeeee
Q 044569 102 SPPRTRFRCGRICL 115 (116)
Q Consensus 102 L~~G~~Idf~~~~~ 115 (116)
|..|++|-++|+||
T Consensus 36 ~~~g~SIavnGvcL 49 (93)
T d1i8da1 36 LETGASVAHNGCCL 49 (93)
T ss_dssp CCTTCEEEETTEEE
T ss_pred cccCCeEEECCEEE
Confidence 56799999999998
No 6
>d1kzla1 b.43.4.3 (A:1-92) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=34.03 E-value=8.6 Score=23.70 Aligned_cols=14 Identities=14% Similarity=0.302 Sum_probs=12.8
Q ss_pred cCCCCEEeeeeeee
Q 044569 102 SPPRTRFRCGRICL 115 (116)
Q Consensus 102 L~~G~~Idf~~~~~ 115 (116)
|..|++|-++|+||
T Consensus 36 i~~g~SIavnGvcL 49 (92)
T d1kzla1 36 CHTGDSIAVNGTCL 49 (92)
T ss_dssp CCTTCEEEETTEEE
T ss_pred cccCceEEeccEEE
Confidence 67899999999998
No 7
>d1i8da2 b.43.4.3 (A:94-206) Riboflavin synthase {Escherichia coli [TaxId: 562]}
Probab=26.21 E-value=14 Score=23.67 Aligned_cols=14 Identities=14% Similarity=-0.062 Sum_probs=12.3
Q ss_pred cCCCCEEeeeeeee
Q 044569 102 SPPRTRFRCGRICL 115 (116)
Q Consensus 102 L~~G~~Idf~~~~~ 115 (116)
|..|++|-++|+||
T Consensus 41 i~~g~SIavnGvcL 54 (113)
T d1i8da2 41 ILYKGFIGIDGISL 54 (113)
T ss_dssp CCTTCEEEETTEEE
T ss_pred hhhhheEeccCceE
Confidence 55789999999998
No 8
>d1twfc2 d.181.1.1 (C:42-172) RPB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.64 E-value=32 Score=21.82 Aligned_cols=17 Identities=0% Similarity=-0.046 Sum_probs=14.0
Q ss_pred EEEEcCCCCEEeeeeee
Q 044569 98 AYVTSPPRTRFRCGRIC 114 (116)
Q Consensus 98 AyVTL~~G~~Idf~~~~ 114 (116)
-|++|++||.|+|--.+
T Consensus 102 lI~kL~pGQ~i~l~a~a 118 (131)
T d1twfc2 102 LICKLRKGQELKLTCVA 118 (131)
T ss_dssp EEEEECTTCEEEEEEEE
T ss_pred EEEEeCCCCEEEEEEEE
Confidence 58899999999986543
No 9
>d1kzla2 b.43.4.3 (A:93-202) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=17.08 E-value=28 Score=22.13 Aligned_cols=14 Identities=7% Similarity=-0.126 Sum_probs=11.4
Q ss_pred cCCCCEEeeeeeee
Q 044569 102 SPPRTRFRCGRICL 115 (116)
Q Consensus 102 L~~G~~Idf~~~~~ 115 (116)
|..|.+|-++|+||
T Consensus 42 l~~~~SIavnGvcL 55 (110)
T d1kzla2 42 IVYKGYIALDGTSL 55 (110)
T ss_dssp CCTTCEEEETTEEE
T ss_pred hhhhheEEcCCcEE
Confidence 34567999999998
No 10
>d1xe0a_ b.121.3.1 (A:) Nucleophosmin (NO38) {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=16.92 E-value=49 Score=21.38 Aligned_cols=16 Identities=38% Similarity=0.439 Sum_probs=9.0
Q ss_pred CCeEeeEEEEeeCCcc
Q 044569 67 GFEVDEARTLNKGGKK 82 (116)
Q Consensus 67 ~VkV~~VnTlnv~GK~ 82 (116)
.+.|..|-+++++|+.
T Consensus 46 E~nvVEve~~~~~g~~ 61 (108)
T d1xe0a_ 46 ELHVVEAEGINYEGKT 61 (108)
T ss_dssp SCEEEEEEEECTTSCE
T ss_pred ceeEEEEeccCCCCCe
Confidence 4555566666665543
Done!