RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 044569
         (116 letters)



>d2j01x1 d.12.1.1 (X:3-95) Ribosomal protein L23 {Thermus
           thermophilus [TaxId: 274]}
          Length = 93

 Score = 39.7 bits (93), Expect = 5e-06
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 67  GFEVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVT 101
             +V +  TL+  GKKK+ G  L  +PD KKA V 
Sbjct: 46  KVKVVKVNTLHVRGKKKRLGRYLGKRPDRKKAIVQ 80


>d2zjrq1 d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 93

 Score = 39.7 bits (93), Expect = 6e-06
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 67  GFEVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVT 101
           G  V    T+N  GK+K+ G  +  + D KKA V 
Sbjct: 46  GVRVIGISTMNVPGKRKRVGRFIGQRNDRKKAIVR 80


>d2qamt1 d.12.1.1 (T:1-93) Ribosomal protein L23 {Escherichia coli
           [TaxId: 562]}
          Length = 93

 Score = 38.6 bits (90), Expect = 1e-05
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 67  GFEVDEARTLNKGGKKKKWGGLLNAKPDYKKAYVT 101
             EV+   TL   GK K+ G  +  + D+KKAYVT
Sbjct: 52  EVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVT 86


>d2ilka_ a.26.1.3 (A:) Interleukin-10 (cytokine synthesis
          inhibitory factor, CSIF) {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 155

 Score = 24.0 bits (52), Expect = 4.6
 Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 7/41 (17%)

Query: 16 RERRSTEWEIRSEITEAQNGKQAAGNLPIKLLMPNTFQNIK 56
          R+ R     +++         Q    L   LL  +  ++ K
Sbjct: 19 RDLRDAFSRVKTFF-------QMKDQLDNLLLKESLLEDFK 52


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.129    0.375 

Gapped
Lambda     K      H
   0.267   0.0686    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 413,947
Number of extensions: 16606
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 7
Length of query: 116
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 43
Effective length of database: 1,405,306
Effective search space: 60428158
Effective search space used: 60428158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.0 bits)