BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044570
(109 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 86.7 bits (213), Expect = 3e-18, Method: Composition-based stats.
Identities = 43/100 (43%), Positives = 60/100 (60%), Gaps = 2/100 (2%)
Query: 9 AAPDELKRGDVHKSIQCYMHEAGVSEREAREHIHDLIAQTWMKMNRDRFGNPHFVSDVFV 68
+A E+ RG+ S+ CYM G+SE A E + +LI +TW KMN+++ G F FV
Sbjct: 453 SASAEIARGETANSVSCYMRTKGISEELATESVMNLIDETWKKMNKEKLGGSLFAKP-FV 511
Query: 69 GIAMNLARMSQCMYQFGEGHRHGVQEITKARVLSLIIDPI 108
A+NLAR S C Y G+ H E+T+ RVLS+I +PI
Sbjct: 512 ETAINLARQSHCTYHNGDAHT-SPDELTRKRVLSVITEPI 550
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 81.6 bits (200), Expect = 9e-17, Method: Composition-based stats.
Identities = 42/99 (42%), Positives = 59/99 (59%), Gaps = 3/99 (3%)
Query: 12 DELKRGDVHKSIQCYMHEAGVSEREAREHIHDLIAQTWMKMNRDRFGNPHFVSDVFVGIA 71
+E+ RGDV KS+QCYM + SE EAR+H+ LIA+ W KMN +R F+G A
Sbjct: 447 EEVSRGDVPKSLQCYMSDYNASEAEARKHVKWLIAEVWKKMNAERVSKDSPFGKDFIGCA 506
Query: 72 MNLARMSQCMYQFGEGHRHGVQE-ITKARVLSLIIDPIA 109
++L RM+Q MY G+G HG Q I ++ + +P A
Sbjct: 507 VDLGRMAQLMYHNGDG--HGTQHPIIHQQMTRTLFEPFA 543
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 80.1 bits (196), Expect = 3e-16, Method: Composition-based stats.
Identities = 41/84 (48%), Positives = 55/84 (65%), Gaps = 5/84 (5%)
Query: 12 DELKRGDVHKSIQCYMHEAGVSEREAREHIHDLIAQTWMKMNRDRFGNPHFVSDVFVGIA 71
DE++RGDV KS+QCYM+E SE EAREH+ LI QTW MN++ + S FV ++
Sbjct: 474 DEVERGDVPKSVQCYMNEKNASEEEAREHVRSLIDQTWKMMNKEMMTSS--FSKYFVEVS 531
Query: 72 MNLARMSQCMYQF---GEGHRHGV 92
NLARM+Q +YQ G G +H +
Sbjct: 532 ANLARMAQWIYQHESDGFGMQHSL 555
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 65.1 bits (157), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/98 (41%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 13 ELKRGDVHKSIQCYMHEAGVSEREAREHIHDLIAQTWMKMNRDRFGNPHFVSDVFVGIAM 72
EL RGDV K+IQCYM E SE EA EH+ LI + W MN F D V A
Sbjct: 455 ELARGDVPKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAGYPF-PDGMVAGAA 513
Query: 73 NLARMSQCMYQFGEGHRHGVQEI-TKARVLSLIIDPIA 109
N+ R++Q +Y G+G GVQ T + L+ +P A
Sbjct: 514 NIGRVAQFIYLHGDG--FGVQHSKTYEHIAGLLFEPYA 549
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 15 KRGDVHKSIQCYMHEAGVSEREAREHIHDLIAQTWMKMNRDRFGNPHFVSDVFVGIAMNL 74
+R D +I+CYM E GV+ +EA + + + W +N++ F P + + ++NL
Sbjct: 461 RREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQE-FLKPTEMPTEVLNRSLNL 519
Query: 75 ARMSQCMYQFGEGHRHGVQEITKARVLSLIIDPIA 109
AR+ +Y+ G+G+ + V + K + SL+I+PIA
Sbjct: 520 ARVMDVLYREGDGYTY-VGKAAKGGITSLLIEPIA 553
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 47.8 bits (112), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 13 ELKRGDVHKSIQCYMHEAGVSEREAREHIHDLIAQTWMKMNRDRFGNPHFVSDVFVGIAM 72
E RG + I+C M + G+S +EA ++ W +N P VS F+ +
Sbjct: 452 EKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLL-RPTPVSTEFLTPIL 510
Query: 73 NLARMSQCMYQFG-EGHRHGVQEITKARVLSLIIDPI 108
NLAR+ + Y +G+ H +E+ K +++L++D I
Sbjct: 511 NLARIVEVTYIHNLDGYTHP-EEVLKPHIINLLVDSI 546
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 13 ELKRGDVHKSIQCYMHEAGVSEREAREHIHDLIAQTWMKMNRDRFGNPHFVSDVFVGIAM 72
E RG + I+C M + G+S +EA ++ W +N P VS F+ +
Sbjct: 452 EKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLL-RPTPVSTEFLTPIL 510
Query: 73 NLARMSQCMYQFG-EGHRHGVQEITKARVLSLIIDPI 108
NLAR+ + Y +G+ H +E+ K +++L++D I
Sbjct: 511 NLARIVEVTYIHNLDGYTHP-EEVLKPHIINLLVDSI 546
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 13 ELKRGDVHKSIQCYMHEAGVSEREAREHIHDLIAQTWMKMNRDRFGNPHFVSDVFVGIAM 72
E RG + I+C M + G+S +EA ++ W +N P VS F+ +
Sbjct: 452 EKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLL-RPTPVSTEFLTPIL 510
Query: 73 NLARMSQCMYQFG-EGHRHGVQEITKARVLSLIIDPI 108
NLAR+ + Y +G+ H +E+ K +++L++D I
Sbjct: 511 NLARIVEVTYIHNLDGYTHP-EEVLKPHIINLLVDSI 546
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 13 ELKRGDVHKSIQCYMHEAGVSEREAREHIHDLIAQTWMKMNRDRFGNPHFVSDVFVGIAM 72
E RG + I+C M + G+S +EA ++ W +N P VS F+ +
Sbjct: 452 EKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLL-RPTPVSTEFLTPIL 510
Query: 73 NLARMSQCMYQFG-EGHRHGVQEITKARVLSLIIDPI 108
NLAR+ + Y +G+ H +E+ K +++L++D I
Sbjct: 511 NLARIVEVTYIHNLDGYTHP-EEVLKPHIINLLVDSI 546
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Query: 13 ELKRGDVHKSIQCYMHE-AGVSEREAREHIHDLIAQTWMKMNRDRFGNPHFVSDVFVGIA 71
E +G+V +IQCYM + +SE EA +H++ ++ ++NR+ N + D++ +
Sbjct: 690 ERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNREFVNNK--IPDIYKRLV 747
Query: 72 MNLARMSQCMYQFGEGHRHGVQEITKARVLSLIIDPIA 109
AR+ Q Y G+G K V + + P+A
Sbjct: 748 FETARIMQLFYMQGDGLTLSHDMEIKEHVKNCLFQPVA 785
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 46.2 bits (108), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 13 ELKRGDVHKSIQCYMHEAGVSEREAREHIHDLIAQTWMKMNRDRFGNPHFVSDVFVGIAM 72
E RG + I+C M + G+S +EA ++ W +N P VS F+ +
Sbjct: 439 EKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLL-RPTPVSTEFLTPIL 497
Query: 73 NLARMSQCMYQFG-EGHRHGVQEITKARVLSLIIDPI 108
NLAR+ + Y +G+ H +++ K +++L++D I
Sbjct: 498 NLARIVEVTYIHNLDGYTHP-EKVLKPHIINLLVDSI 533
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 46.2 bits (108), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 13 ELKRGDVHKSIQCYMHEAGVSEREAREHIHDLIAQTWMKMNRDRFGNPHFVSDVFVGIAM 72
E RG + I+C M + G+S +EA ++ W +N P VS F+ +
Sbjct: 454 EKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLL-RPTPVSTEFLTPIL 512
Query: 73 NLARMSQCMYQFG-EGHRHGVQEITKARVLSLIIDPI 108
NLAR+ + Y +G+ H +++ K +++L++D I
Sbjct: 513 NLARIVEVTYIHNLDGYTHP-EKVLKPHIINLLVDSI 548
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 46.2 bits (108), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 13 ELKRGDVHKSIQCYMHEAGVSEREAREHIHDLIAQTWMKMNRDRFGNPHFVSDVFVGIAM 72
E RG + I+C M + G+S +EA ++ W +N P VS F+ +
Sbjct: 452 EKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLL-RPTPVSTEFLTPIL 510
Query: 73 NLARMSQCMYQFG-EGHRHGVQEITKARVLSLIIDPI 108
NLAR+ + Y +G+ H +++ K +++L++D I
Sbjct: 511 NLARIVEVTYIHNLDGYTHP-EKVLKPHIINLLVDSI 546
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 45.8 bits (107), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 13 ELKRGDVHKSIQCYMHEAGVSEREAREHIHDLIAQTWMKMNRDRFGNPHFVSDVFVGIAM 72
E RG + I+C M + G+S +EA ++ W +N P VS F+ +
Sbjct: 452 EKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLL-RPTPVSTEFLTPIL 510
Query: 73 NLARMSQCMYQFG-EGHRHGVQEITKARVLSLIIDPI 108
NLAR+ + Y +G+ H +++ K +++L++D I
Sbjct: 511 NLARIVEVTYIHNLDGYTHP-EKVLKPHIINLLVDSI 546
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 45.8 bits (107), Expect = 6e-06, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 13 ELKRGDVHKSIQCYMHEAGVSEREAREHIHDLIAQTWMKMNRDRFGNPHFVSDVFVGIAM 72
E RG + I+C M + G+S +EA ++ W +N P VS F+ +
Sbjct: 454 EKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLL-RPTPVSTEFLTPIL 512
Query: 73 NLARMSQCMYQFG-EGHRHGVQEITKARVLSLIIDPI 108
NLAR+ + Y +G+ H +++ K +++L++D I
Sbjct: 513 NLARIIEVTYIHNLDGYTHP-EKVLKPHIINLLVDSI 548
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 35.8 bits (81), Expect = 0.007, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 11/114 (9%)
Query: 3 NAWISVAAPD------ELKRGDVHKSIQCYMHE-AGVSEREAREHIHDLIAQTWMKMNRD 55
N+ IS A D E RG++ SI+CYM + +E EA +HI+ ++ ++ R+
Sbjct: 705 NSLISRLADDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTRE 764
Query: 56 RFGNPHFVSDVFVGIAMNLARMSQCMYQFGEGHRHGVQEI-TKARVLSLIIDPI 108
F P V + R++ +++ G+G GV ++ K + +I+P+
Sbjct: 765 -FLKPDDVPFACKKMLFEETRVTMVIFKDGDG--FGVSKLEVKDHIKECLIEPL 815
>pdb|3BFE|A Chain A, Crystal Structure Of The Class A Beta-Lactamase Sed-1 From
Citrobacter Sedlakii
pdb|3BFE|B Chain B, Crystal Structure Of The Class A Beta-Lactamase Sed-1 From
Citrobacter Sedlakii
pdb|3BFE|C Chain C, Crystal Structure Of The Class A Beta-Lactamase Sed-1 From
Citrobacter Sedlakii
pdb|3BFE|D Chain D, Crystal Structure Of The Class A Beta-Lactamase Sed-1 From
Citrobacter Sedlakii
Length = 262
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 38 REHIHDLIAQTWMKMNRDRFGNPHFVSDVFVGIAMNLARMSQCMYQFGE 86
+ HD I Q M + + N + V++ +VG M LA +S Q+ +
Sbjct: 57 QSETHDGILQQKMTIKKADLTNWNPVTEKYVGNTMTLAELSAATLQYSD 105
>pdb|3BFC|A Chain A, Class A Beta-Lactamase Sed-G238c Complexed With Imipenem
pdb|3BFC|B Chain B, Class A Beta-Lactamase Sed-G238c Complexed With Imipenem
pdb|3BFC|C Chain C, Class A Beta-Lactamase Sed-G238c Complexed With Imipenem
pdb|3BFC|D Chain D, Class A Beta-Lactamase Sed-G238c Complexed With Imipenem
pdb|3BFF|A Chain A, Class A Beta-Lactamase Sed-G238c Complexed With Faropenem
pdb|3BFF|B Chain B, Class A Beta-Lactamase Sed-G238c Complexed With Faropenem
pdb|3BFF|C Chain C, Class A Beta-Lactamase Sed-G238c Complexed With Faropenem
pdb|3BFF|D Chain D, Class A Beta-Lactamase Sed-G238c Complexed With Faropenem
pdb|3BFG|A Chain A, Class A Beta-Lactamase Sed-G238c Complexed With Meropenem
pdb|3BFG|B Chain B, Class A Beta-Lactamase Sed-G238c Complexed With Meropenem
pdb|3BFG|C Chain C, Class A Beta-Lactamase Sed-G238c Complexed With Meropenem
pdb|3BFG|D Chain D, Class A Beta-Lactamase Sed-G238c Complexed With Meropenem
Length = 262
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 38 REHIHDLIAQTWMKMNRDRFGNPHFVSDVFVGIAMNLARMSQCMYQFGE 86
+ HD I Q M + + N + V++ +VG M LA +S Q+ +
Sbjct: 57 QSETHDGILQQKMTIKKADLTNWNPVTEKYVGNTMTLAELSAATLQYSD 105
>pdb|3BFD|A Chain A, Crystal Structure Of The Class A Beta-lactamase Sed-g238c
Mutant From Citrobacter Sedlakii
pdb|3BFD|B Chain B, Crystal Structure Of The Class A Beta-lactamase Sed-g238c
Mutant From Citrobacter Sedlakii
pdb|3BFD|C Chain C, Crystal Structure Of The Class A Beta-lactamase Sed-g238c
Mutant From Citrobacter Sedlakii
pdb|3BFD|D Chain D, Crystal Structure Of The Class A Beta-lactamase Sed-g238c
Mutant From Citrobacter Sedlakii
Length = 263
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 38 REHIHDLIAQTWMKMNRDRFGNPHFVSDVFVGIAMNLARMSQCMYQFGE 86
+ HD I Q M + + N + V++ +VG M LA +S Q+ +
Sbjct: 58 QSETHDGILQQKMTIKKADLTNWNPVTEKYVGNTMTLAELSAATLQYSD 106
>pdb|3U84|A Chain A, Crystal Structure Of Human Menin
pdb|3U84|B Chain B, Crystal Structure Of Human Menin
pdb|3U85|A Chain A, Crystal Structure Of Human Menin In Complex With Mll1
pdb|3U86|A Chain A, Crystal Structure Of Human Menin In Complex With Jund
pdb|3U88|A Chain A, Crystal Structure Of Human Menin In Complex With Mll1 And
Ledgf
pdb|3U88|B Chain B, Crystal Structure Of Human Menin In Complex With Mll1 And
Ledgf
Length = 550
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 16 RGDVHKSIQCYMHEAGVSEREAREHIHDLIAQTWMKMNRDRFGNPHFVSDVF 67
RG V S+ Y E GVS RE + + D+I W ++R F + + +F
Sbjct: 98 RGAVDLSL--YPREGGVSSRELVKKVSDVI---WNSLSRSYFKDRAHIQSLF 144
>pdb|4GPQ|A Chain A, Structural Insights Into Inhibition Of The Bivalent
Menin-Mll Interaction By Small Molecules In Leukemia
pdb|4GQ3|A Chain A, Human Menin With Bound Inhibitor Mi-2
pdb|4GQ4|A Chain A, Human Menin With Bound Inhibitor Mi-2-2
pdb|4GQ6|A Chain A, Human Menin In Complex With Mll Peptide
Length = 489
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 16 RGDVHKSIQCYMHEAGVSEREAREHIHDLIAQTWMKMNRDRFGNPHFVSDVF 67
RG V S+ Y E GVS RE + + D+I W ++R F + + +F
Sbjct: 83 RGAVDLSL--YPREGGVSSRELVKKVSDVI---WNSLSRSYFKDRAHIQSLF 129
>pdb|3VGI|A Chain A, The Crystal Structure Of Hyperthermophilic Family 12
Endocellulase From Pyrococcus Furiosus
Length = 319
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 52 MNRDRFGNPHFVSDVFVGIAMNLARMSQCMYQFGEGHRHGVQEI 95
+++D GNP F ++ + +N ++ Y G H VQ++
Sbjct: 67 IDKDGDGNPEFYIEINLWNILNATGFAEMTYNLTSGVLHYVQQL 110
>pdb|1HU3|A Chain A, Middle Domain Of Human Eif4gii
Length = 260
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 18 DVHKSIQCYMHEAGVSEREAREHIHDLIAQTWMKMNRDRFGNPHFVSDVFVGIAMNLARM 77
DV + Q + A E R +HD + + K R GN F+ ++F + A
Sbjct: 110 DVFEKKQKELEAASAPEERTR--LHDELEEAKDKARRRSIGNIKFIGELFKLKXLTEAIX 167
Query: 78 SQCMYQFGEGH 88
C+ + + H
Sbjct: 168 HDCVVKLLKNH 178
>pdb|2YJN|A Chain A, Structure Of The Glycosyltransferase Eryciii From The
Erythromycin Biosynthetic Pathway, In Complex With Its
Activating Partner, Erycii
Length = 441
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 31 GVSEREAREHIHDLIAQTWMKMNRDRFGNPHFVSDVFVG 69
G+ + EH D +A+ W+ +++G P F +V VG
Sbjct: 187 GLLPDQPEEHREDPLAE-WLTWTLEKYGGPAFDEEVVVG 224
>pdb|4IR0|A Chain A, Crystal Structure Of Metallothiol Transferase Fosb 2
From Bacillus Anthracis Str. Ames
pdb|4IR0|B Chain B, Crystal Structure Of Metallothiol Transferase Fosb 2
From Bacillus Anthracis Str. Ames
Length = 148
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 1 MENAWISVAAPDELKRGDVHKSIQCYMHEAGVSEREAREHIHDLIAQT 48
+ WI++ +++ R ++ Q Y H A EA +H+ +++ Q
Sbjct: 43 LNGLWIALNVEEDIPRNEIK---QSYTHXAFTVTNEALDHLKEVLIQN 87
>pdb|2GQ1|A Chain A, Crystal Structure Of Recombinant Type I
Fructose-1,6-Bisphosphatase From Escherichia Coli
Complexed With Sulfate Ions
pdb|2OWZ|A Chain A, R-state, Citrate And Fru-6-p-bound Escherichia Coli
Fructose-1,6- Bisphosphatase
pdb|2OX3|A Chain A, R-State, Pep And Fru-6-P-Bound, Escherichia Coli
Fructose-1, 6-Bisphosphatase
pdb|2Q8M|A Chain A, T-Like Fructose-1,6-Bisphosphatase From Escherichia Coli
With Amp, Glucose 6-Phosphate, And Fructose
1,6-Bisphosphate Bound
pdb|2Q8M|B Chain B, T-Like Fructose-1,6-Bisphosphatase From Escherichia Coli
With Amp, Glucose 6-Phosphate, And Fructose
1,6-Bisphosphate Bound
pdb|2QVR|A Chain A, E. Coli Fructose-1,6-Bisphosphatase: Citrate, Fru-2,6-P2,
And Mg2+ Bound
Length = 332
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 29 EAGVSEREAREHIHDLIAQTWMKMNRDRFGNPHFVSDV 66
+AG + +E I D+I +T + GN H V DV
Sbjct: 285 QAGGKASDGKERILDIIPETLHQRRSFFVGNDHXVEDV 322
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.135 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,304,416
Number of Sequences: 62578
Number of extensions: 111644
Number of successful extensions: 270
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 243
Number of HSP's gapped (non-prelim): 28
length of query: 109
length of database: 14,973,337
effective HSP length: 73
effective length of query: 36
effective length of database: 10,405,143
effective search space: 374585148
effective search space used: 374585148
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)