BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044571
         (79 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1RZ3|A Chain A, Structure Of A Possible Uridine Kinase From Bacillus
          Stearothermophilus
          Length = 201

 Score = 26.6 bits (57), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 18/26 (69%)

Query: 3  GLYGISCVGKTTLANFVGNQLRQEKI 28
          G+ G+S  GKTTLAN +   LR++ I
Sbjct: 26 GIDGLSRSGKTTLANQLSQTLREQGI 51


>pdb|2VHL|A Chain A, The Three-Dimensional Structure Of The
           N-Acetylglucosamine- 6-Phosphate Deacetylase From
           Bacillus Subtilis
 pdb|2VHL|B Chain B, The Three-Dimensional Structure Of The
           N-Acetylglucosamine- 6-Phosphate Deacetylase From
           Bacillus Subtilis
          Length = 396

 Score = 25.8 bits (55), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 13  TTLANFVG-NQLRQEKIFDEVGIATVSQDPDIIKVQGE 49
           T +AN    N  +Q  IFD  G  TV +D D++ V  +
Sbjct: 337 TDIANITSENAAKQLGIFDRKGSVTVGKDADLVIVSSD 374


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.135    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,171,616
Number of Sequences: 62578
Number of extensions: 71607
Number of successful extensions: 204
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 201
Number of HSP's gapped (non-prelim): 5
length of query: 79
length of database: 14,973,337
effective HSP length: 48
effective length of query: 31
effective length of database: 11,969,593
effective search space: 371057383
effective search space used: 371057383
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)