Query 044571
Match_columns 79
No_of_seqs 194 out of 2062
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 04:36:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044571.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044571hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3839 MalK ABC-type sugar tr 99.9 2.4E-22 5.2E-27 111.4 6.2 75 1-75 31-122 (338)
2 COG1116 TauB ABC-type nitrate/ 99.9 3.4E-22 7.4E-27 106.4 6.4 75 1-75 31-119 (248)
3 COG3842 PotA ABC-type spermidi 99.9 3.8E-22 8.2E-27 111.1 6.0 75 1-75 33-125 (352)
4 COG1126 GlnQ ABC-type polar am 99.9 1.6E-21 3.5E-26 102.2 6.2 75 1-75 30-125 (240)
5 COG1136 SalX ABC-type antimicr 99.8 3.1E-21 6.8E-26 102.2 4.7 75 1-75 33-130 (226)
6 COG1118 CysA ABC-type sulfate/ 99.8 4.3E-20 9.3E-25 100.9 6.0 75 1-75 30-126 (345)
7 COG1135 AbcC ABC-type metal io 99.8 9.7E-20 2.1E-24 99.6 5.6 75 1-75 34-130 (339)
8 COG2884 FtsE Predicted ATPase 99.8 2.2E-19 4.9E-24 92.8 6.2 74 2-75 31-126 (223)
9 COG1121 ZnuC ABC-type Mn/Zn tr 99.8 5.6E-19 1.2E-23 94.9 6.3 78 1-78 32-132 (254)
10 COG3638 ABC-type phosphate/pho 99.8 1.1E-18 2.4E-23 92.6 5.9 75 1-75 32-136 (258)
11 COG1124 DppF ABC-type dipeptid 99.8 2.7E-18 5.8E-23 91.4 6.6 74 1-75 35-129 (252)
12 COG1120 FepC ABC-type cobalami 99.8 5.4E-19 1.2E-23 95.3 4.0 75 1-75 30-127 (258)
13 COG1125 OpuBA ABC-type proline 99.8 1.2E-18 2.6E-23 93.5 4.8 75 1-75 29-122 (309)
14 COG1117 PstB ABC-type phosphat 99.8 5.6E-18 1.2E-22 89.1 6.4 56 1-56 35-114 (253)
15 COG4525 TauB ABC-type taurine 99.7 1.5E-17 3.3E-22 86.7 7.1 75 1-75 33-121 (259)
16 PRK11432 fbpC ferric transport 99.7 7.8E-18 1.7E-22 94.6 6.2 75 1-75 34-125 (351)
17 PRK11650 ugpC glycerol-3-phosp 99.7 1.1E-17 2.3E-22 94.2 6.0 75 1-75 32-123 (356)
18 TIGR03265 PhnT2 putative 2-ami 99.7 1.5E-17 3.3E-22 93.5 6.4 75 1-75 32-123 (353)
19 COG1122 CbiO ABC-type cobalt t 99.7 1.7E-17 3.7E-22 88.9 5.9 74 2-75 33-127 (235)
20 PRK09452 potA putrescine/sperm 99.7 2.4E-17 5.2E-22 93.3 6.1 75 1-75 42-133 (375)
21 PRK11607 potG putrescine trans 99.7 4.6E-17 1E-21 92.3 6.7 75 1-75 47-138 (377)
22 TIGR02314 ABC_MetN D-methionin 99.7 4.3E-17 9.3E-22 91.4 6.4 75 1-75 33-129 (343)
23 TIGR03258 PhnT 2-aminoethylpho 99.7 3.4E-17 7.3E-22 92.4 6.0 75 1-75 33-126 (362)
24 COG0444 DppD ABC-type dipeptid 99.7 6.8E-17 1.5E-21 88.9 6.5 75 1-75 33-139 (316)
25 COG4175 ProV ABC-type proline/ 99.7 7.4E-18 1.6E-22 92.8 2.8 78 1-78 56-157 (386)
26 PRK10851 sulfate/thiosulfate t 99.7 4.9E-17 1.1E-21 91.5 6.1 75 1-75 30-125 (353)
27 COG3840 ThiQ ABC-type thiamine 99.7 3.5E-17 7.5E-22 84.5 4.8 75 1-75 27-118 (231)
28 COG1127 Ttg2A ABC-type transpo 99.7 3.2E-17 6.8E-22 87.3 4.8 75 1-75 36-133 (263)
29 COG1131 CcmA ABC-type multidru 99.7 7.5E-17 1.6E-21 88.9 5.9 75 1-75 33-125 (293)
30 PRK11000 maltose/maltodextrin 99.7 1.3E-16 2.9E-21 90.3 6.8 75 1-75 31-122 (369)
31 COG0411 LivG ABC-type branched 99.7 8.3E-18 1.8E-22 89.5 1.7 75 1-75 32-138 (250)
32 TIGR01186 proV glycine betaine 99.7 1.3E-16 2.9E-21 90.0 6.4 75 1-75 21-118 (363)
33 COG4181 Predicted ABC-type tra 99.7 1.1E-16 2.3E-21 82.2 4.7 74 2-75 39-135 (228)
34 cd03235 ABC_Metallic_Cations A 99.7 2.4E-16 5.1E-21 83.5 5.7 53 1-53 27-94 (213)
35 cd03265 ABC_DrrA DrrA is the A 99.7 3.7E-16 8.1E-21 83.1 6.1 75 1-75 28-120 (220)
36 cd03261 ABC_Org_Solvent_Resist 99.7 5.2E-16 1.1E-20 83.2 6.7 75 1-75 28-125 (235)
37 TIGR03415 ABC_choXWV_ATP choli 99.7 2.9E-16 6.3E-21 89.1 5.9 75 1-75 52-153 (382)
38 PRK11629 lolD lipoprotein tran 99.7 4.7E-16 1E-20 83.4 6.3 75 1-75 37-134 (233)
39 TIGR00960 3a0501s02 Type II (G 99.7 5E-16 1.1E-20 82.4 6.3 75 1-75 31-127 (216)
40 cd03259 ABC_Carb_Solutes_like 99.7 6E-16 1.3E-20 82.0 6.6 75 1-75 28-119 (213)
41 COG3845 ABC-type uncharacteriz 99.7 2.8E-16 6E-21 90.2 5.5 75 1-75 32-129 (501)
42 PRK11153 metN DL-methionine tr 99.7 4.8E-16 1E-20 87.3 6.3 75 1-75 33-129 (343)
43 TIGR01188 drrA daunorubicin re 99.7 6.5E-16 1.4E-20 85.5 6.7 75 1-75 21-113 (302)
44 PRK13537 nodulation ABC transp 99.7 7.2E-16 1.6E-20 85.5 6.9 75 1-75 35-127 (306)
45 cd03293 ABC_NrtD_SsuB_transpor 99.6 6.6E-16 1.4E-20 82.2 6.3 75 1-75 32-120 (220)
46 COG4598 HisP ABC-type histidin 99.6 3.5E-16 7.6E-21 81.0 4.7 75 1-75 34-141 (256)
47 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.6 7.3E-16 1.6E-20 81.9 6.0 75 1-75 32-129 (218)
48 COG0410 LivF ABC-type branched 99.6 3.3E-16 7.2E-21 83.0 4.6 55 1-55 31-104 (237)
49 cd03263 ABC_subfamily_A The AB 99.6 1.3E-15 2.8E-20 81.0 6.9 75 1-75 30-122 (220)
50 cd03296 ABC_CysA_sulfate_impor 99.6 1.1E-15 2.3E-20 82.3 6.6 53 1-53 30-98 (239)
51 cd03264 ABC_drug_resistance_li 99.6 8.2E-16 1.8E-20 81.4 5.9 75 1-75 27-119 (211)
52 PRK10070 glycine betaine trans 99.6 9.8E-16 2.1E-20 87.4 6.6 75 1-75 56-153 (400)
53 COG1123 ATPase components of v 99.6 5.2E-16 1.1E-20 90.4 5.5 75 1-75 319-417 (539)
54 PRK15079 oligopeptide ABC tran 99.6 7.4E-16 1.6E-20 86.2 5.8 75 1-75 49-149 (331)
55 cd03266 ABC_NatA_sodium_export 99.6 1.4E-15 3E-20 80.8 6.6 75 1-75 33-125 (218)
56 TIGR01166 cbiO cobalt transpor 99.6 1.8E-15 3.9E-20 79.0 6.9 75 1-75 20-116 (190)
57 cd03301 ABC_MalK_N The N-termi 99.6 1.5E-15 3.3E-20 80.4 6.6 75 1-75 28-119 (213)
58 PRK11248 tauB taurine transpor 99.6 1.6E-15 3.5E-20 82.3 6.9 75 1-75 29-117 (255)
59 cd03269 ABC_putative_ATPase Th 99.6 1.2E-15 2.6E-20 80.7 6.2 75 1-75 28-117 (210)
60 cd03219 ABC_Mj1267_LivG_branch 99.6 1.3E-15 2.9E-20 81.7 6.4 54 1-54 28-100 (236)
61 cd03292 ABC_FtsE_transporter F 99.6 1.6E-15 3.4E-20 80.4 6.5 75 1-75 29-125 (214)
62 TIGR02211 LolD_lipo_ex lipopro 99.6 1.3E-15 2.8E-20 81.1 6.1 75 1-75 33-130 (221)
63 TIGR01277 thiQ thiamine ABC tr 99.6 2.3E-15 5E-20 79.8 6.8 53 1-53 26-94 (213)
64 PRK10584 putative ABC transpor 99.6 1.7E-15 3.6E-20 81.0 6.2 75 1-75 38-135 (228)
65 PRK13651 cobalt transporter AT 99.6 1.2E-15 2.6E-20 84.6 5.8 75 1-75 35-153 (305)
66 TIGR02673 FtsE cell division A 99.6 2E-15 4.4E-20 80.0 6.4 75 1-75 30-126 (214)
67 PRK13536 nodulation factor exp 99.6 2.3E-15 5E-20 84.5 6.9 75 1-75 69-161 (340)
68 TIGR03608 L_ocin_972_ABC putat 99.6 2.8E-15 6.1E-20 79.0 6.9 75 1-75 26-123 (206)
69 TIGR02142 modC_ABC molybdenum 99.6 2.3E-15 4.9E-20 84.9 6.8 74 1-75 25-120 (354)
70 PRK13634 cbiO cobalt transport 99.6 2.7E-15 5.8E-20 82.7 6.9 75 1-75 35-133 (290)
71 PRK13637 cbiO cobalt transport 99.6 2.1E-15 4.6E-20 83.0 6.5 75 1-75 35-131 (287)
72 TIGR03864 PQQ_ABC_ATP ABC tran 99.6 3.1E-15 6.8E-20 80.3 6.9 75 1-75 29-121 (236)
73 cd03294 ABC_Pro_Gly_Bertaine T 99.6 1.9E-15 4.2E-20 82.5 6.2 75 1-75 52-149 (269)
74 cd03298 ABC_ThiQ_thiamine_tran 99.6 2.5E-15 5.5E-20 79.5 6.4 75 1-75 26-117 (211)
75 cd03224 ABC_TM1139_LivF_branch 99.6 1.4E-15 3E-20 81.0 5.4 53 1-53 28-99 (222)
76 cd03226 ABC_cobalt_CbiO_domain 99.6 1.9E-15 4.2E-20 79.7 5.9 52 1-52 28-95 (205)
77 TIGR01184 ntrCD nitrate transp 99.6 2.6E-15 5.6E-20 80.5 6.4 53 1-53 13-78 (230)
78 cd03297 ABC_ModC_molybdenum_tr 99.6 3.8E-15 8.2E-20 79.0 7.0 74 1-75 25-120 (214)
79 cd03258 ABC_MetN_methionine_tr 99.6 4E-15 8.6E-20 79.8 7.0 75 1-75 33-129 (233)
80 TIGR01288 nodI ATP-binding ABC 99.6 3.2E-15 7E-20 82.8 6.9 75 1-75 32-124 (303)
81 PRK13643 cbiO cobalt transport 99.6 3.8E-15 8.3E-20 82.0 7.1 75 1-75 34-132 (288)
82 PRK10908 cell division protein 99.6 2.9E-15 6.3E-20 79.8 6.4 75 1-75 30-126 (222)
83 PRK13646 cbiO cobalt transport 99.6 2.8E-15 6E-20 82.5 6.5 75 1-75 35-133 (286)
84 TIGR02315 ABC_phnC phosphonate 99.6 3.1E-15 6.7E-20 80.6 6.5 52 1-52 30-102 (243)
85 cd03218 ABC_YhbG The ABC trans 99.6 5.3E-15 1.1E-19 79.2 7.2 75 1-75 28-122 (232)
86 TIGR02868 CydC thiol reductant 99.6 1.5E-15 3.2E-20 89.1 5.4 52 1-52 363-430 (529)
87 PRK13650 cbiO cobalt transport 99.6 2.9E-15 6.3E-20 82.2 6.3 75 1-75 35-129 (279)
88 PRK10261 glutathione transport 99.6 1.9E-15 4.2E-20 90.1 5.8 75 1-75 44-154 (623)
89 cd03225 ABC_cobalt_CbiO_domain 99.6 2.3E-15 5E-20 79.6 5.5 75 1-75 29-123 (211)
90 PRK11308 dppF dipeptide transp 99.6 3.4E-15 7.3E-20 83.5 6.4 75 1-75 43-142 (327)
91 TIGR03522 GldA_ABC_ATP gliding 99.6 3.7E-15 8.1E-20 82.5 6.5 75 1-75 30-122 (301)
92 PRK13647 cbiO cobalt transport 99.6 3.1E-15 6.7E-20 81.9 6.0 75 1-75 33-127 (274)
93 cd03295 ABC_OpuCA_Osmoprotecti 99.6 5.2E-15 1.1E-19 79.7 6.7 75 1-75 29-122 (242)
94 cd03262 ABC_HisP_GlnQ_permease 99.6 5.2E-15 1.1E-19 78.3 6.5 53 1-53 28-100 (213)
95 PRK11144 modC molybdate transp 99.6 3.7E-15 8E-20 84.0 6.2 53 1-53 26-100 (352)
96 COG4148 ModC ABC-type molybdat 99.6 8.4E-16 1.8E-20 83.8 3.5 56 1-56 26-103 (352)
97 PRK10771 thiQ thiamine transpo 99.6 4E-15 8.6E-20 79.8 6.0 75 1-75 27-118 (232)
98 PRK09536 btuD corrinoid ABC tr 99.6 3.8E-15 8.3E-20 85.1 5.9 75 1-75 31-128 (402)
99 TIGR03771 anch_rpt_ABC anchore 99.6 6.2E-15 1.3E-19 78.7 6.4 53 1-53 8-75 (223)
100 cd03260 ABC_PstB_phosphate_tra 99.6 8.3E-15 1.8E-19 78.3 6.9 75 1-75 28-128 (227)
101 PRK11831 putative ABC transpor 99.6 5.9E-15 1.3E-19 80.6 6.4 54 1-54 35-109 (269)
102 PRK09473 oppD oligopeptide tra 99.6 4.3E-15 9.3E-20 83.2 6.0 75 1-75 44-147 (330)
103 PRK11022 dppD dipeptide transp 99.6 5.2E-15 1.1E-19 82.7 6.2 75 1-75 35-139 (326)
104 PRK10895 lipopolysaccharide AB 99.6 5.8E-15 1.3E-19 79.5 6.1 53 1-53 31-102 (241)
105 COG4167 SapF ABC-type antimicr 99.6 5.5E-15 1.2E-19 76.8 5.6 42 2-43 42-98 (267)
106 TIGR02324 CP_lyasePhnL phospho 99.6 7.2E-15 1.6E-19 78.4 6.2 75 1-75 36-137 (224)
107 COG1123 ATPase components of v 99.6 1E-14 2.2E-19 85.1 7.2 75 1-75 37-141 (539)
108 cd03256 ABC_PhnC_transporter A 99.6 9.5E-15 2.1E-19 78.6 6.5 53 1-53 29-102 (241)
109 PRK13638 cbiO cobalt transport 99.6 1E-14 2.3E-19 79.7 6.8 75 1-75 29-125 (271)
110 PRK13635 cbiO cobalt transport 99.6 7E-15 1.5E-19 80.7 6.1 75 1-75 35-129 (279)
111 PRK11247 ssuB aliphatic sulfon 99.6 7.5E-15 1.6E-19 79.8 6.1 52 1-52 40-104 (257)
112 PRK11124 artP arginine transpo 99.6 1.3E-14 2.8E-19 78.2 6.9 52 1-52 30-105 (242)
113 cd03268 ABC_BcrA_bacitracin_re 99.6 6.5E-15 1.4E-19 77.8 5.6 53 1-53 28-96 (208)
114 cd03250 ABCC_MRP_domain1 Domai 99.6 2.9E-15 6.3E-20 79.0 4.3 51 1-52 33-88 (204)
115 PRK09493 glnQ glutamine ABC tr 99.6 1.3E-14 2.9E-19 78.0 6.8 75 1-75 29-125 (240)
116 PRK13548 hmuV hemin importer A 99.6 8.3E-15 1.8E-19 79.7 6.1 75 1-75 30-123 (258)
117 PRK15112 antimicrobial peptide 99.6 1.1E-14 2.3E-19 79.5 6.5 75 1-75 41-137 (267)
118 PRK13640 cbiO cobalt transport 99.6 4.1E-15 8.9E-20 81.7 4.9 75 1-75 35-132 (282)
119 TIGR02770 nickel_nikD nickel i 99.6 9.5E-15 2.1E-19 78.3 6.2 53 1-53 14-88 (230)
120 PRK13641 cbiO cobalt transport 99.6 1.1E-14 2.4E-19 80.2 6.5 75 1-75 35-133 (287)
121 PRK13644 cbiO cobalt transport 99.6 8.8E-15 1.9E-19 80.1 6.0 75 1-75 30-125 (274)
122 TIGR00972 3a0107s01c2 phosphat 99.6 1.5E-14 3.3E-19 78.1 6.9 53 1-53 29-105 (247)
123 PRK10247 putative ABC transpor 99.6 1.1E-14 2.3E-19 77.9 6.2 52 1-52 35-103 (225)
124 cd03222 ABC_RNaseL_inhibitor T 99.6 2.7E-15 5.9E-20 77.7 3.8 42 1-42 27-71 (177)
125 PRK13636 cbiO cobalt transport 99.6 1.2E-14 2.7E-19 79.9 6.5 75 1-75 34-130 (283)
126 PRK10762 D-ribose transporter 99.6 7.3E-15 1.6E-19 85.8 5.9 75 1-75 32-130 (501)
127 PRK03695 vitamin B12-transport 99.6 1.4E-14 2.9E-19 78.4 6.5 75 1-75 24-115 (248)
128 COG4555 NatA ABC-type Na+ tran 99.6 8.1E-15 1.8E-19 76.8 5.4 75 1-75 30-122 (245)
129 PRK10261 glutathione transport 99.6 7.5E-15 1.6E-19 87.6 5.9 75 1-75 352-451 (623)
130 PRK13538 cytochrome c biogenes 99.6 1.4E-14 3E-19 76.4 6.4 53 1-53 29-98 (204)
131 KOG4658 Apoptotic ATPase [Sign 99.6 2.5E-14 5.4E-19 87.8 8.2 78 1-78 181-263 (889)
132 PRK13632 cbiO cobalt transport 99.6 1.1E-14 2.5E-19 79.6 6.1 75 1-75 37-131 (271)
133 TIGR03269 met_CoM_red_A2 methy 99.6 8E-15 1.7E-19 86.0 5.8 75 1-75 312-411 (520)
134 cd03237 ABC_RNaseL_inhibitor_d 99.6 3.6E-15 7.8E-20 80.6 4.1 51 1-51 27-83 (246)
135 COG4161 ArtP ABC-type arginine 99.6 1.2E-14 2.7E-19 74.3 5.7 77 2-78 31-134 (242)
136 TIGR02982 heterocyst_DevA ABC 99.6 1.9E-14 4E-19 76.7 6.7 75 1-75 33-130 (220)
137 PRK13652 cbiO cobalt transport 99.6 1.8E-14 4E-19 79.0 6.8 75 1-75 32-126 (277)
138 TIGR01187 potA spermidine/putr 99.6 1.1E-14 2.4E-19 81.4 6.0 72 4-75 1-89 (325)
139 PRK11264 putative amino-acid A 99.6 1.5E-14 3.3E-19 78.2 6.3 75 1-75 31-133 (250)
140 PRK13639 cbiO cobalt transport 99.6 1.5E-14 3.4E-19 79.2 6.4 75 1-75 30-126 (275)
141 TIGR03005 ectoine_ehuA ectoine 99.6 2.2E-14 4.8E-19 77.7 6.9 52 1-52 28-110 (252)
142 PRK11176 lipid transporter ATP 99.6 7.3E-15 1.6E-19 87.0 5.3 51 2-52 372-439 (582)
143 PRK13649 cbiO cobalt transport 99.6 2E-14 4.2E-19 78.9 6.6 52 1-52 35-109 (280)
144 PRK10619 histidine/lysine/argi 99.6 2.7E-14 5.8E-19 77.6 7.1 75 1-75 33-140 (257)
145 PRK14259 phosphate ABC transpo 99.6 3.1E-14 6.8E-19 77.8 7.2 52 1-52 41-116 (269)
146 PRK11300 livG leucine/isoleuci 99.6 2.3E-14 4.9E-19 77.7 6.6 53 1-53 33-104 (255)
147 COG4136 ABC-type uncharacteriz 99.6 4.4E-15 9.4E-20 75.1 3.4 73 1-73 30-121 (213)
148 PRK14250 phosphate ABC transpo 99.6 2.3E-14 5E-19 77.2 6.4 51 1-51 31-98 (241)
149 PRK10575 iron-hydroxamate tran 99.6 2.1E-14 4.5E-19 78.3 6.3 53 1-53 39-109 (265)
150 PRK13631 cbiO cobalt transport 99.6 2.7E-14 5.7E-19 79.7 6.7 75 1-75 54-164 (320)
151 PRK13549 xylose transporter AT 99.6 8.8E-15 1.9E-19 85.6 5.0 75 1-75 33-132 (506)
152 PRK11231 fecE iron-dicitrate t 99.6 2.4E-14 5.3E-19 77.7 6.4 52 1-52 30-99 (255)
153 TIGR01189 ccmA heme ABC export 99.6 2.7E-14 5.9E-19 75.0 6.4 53 1-53 28-97 (198)
154 PRK11701 phnK phosphonate C-P 99.6 1.8E-14 3.9E-19 78.3 5.9 26 1-26 34-59 (258)
155 PRK14247 phosphate ABC transpo 99.5 2.7E-14 5.9E-19 77.3 6.5 53 1-53 31-106 (250)
156 TIGR02769 nickel_nikE nickel i 99.5 3E-14 6.4E-19 77.7 6.7 53 1-53 39-114 (265)
157 cd03223 ABCD_peroxisomal_ALDP 99.5 9.3E-15 2E-19 75.0 4.5 51 1-51 29-85 (166)
158 PRK14241 phosphate transporter 99.5 3.1E-14 6.7E-19 77.4 6.7 54 1-54 32-110 (258)
159 PRK11819 putative ABC transpor 99.5 8.9E-15 1.9E-19 86.4 4.8 52 1-52 35-93 (556)
160 COG1129 MglA ABC-type sugar tr 99.5 1.5E-14 3.3E-19 83.9 5.6 75 1-75 36-134 (500)
161 PRK13645 cbiO cobalt transport 99.5 3.7E-14 8.1E-19 78.2 7.0 52 1-52 39-114 (289)
162 PRK15439 autoinducer 2 ABC tra 99.5 1.6E-14 3.5E-19 84.6 5.8 72 1-75 39-129 (510)
163 TIGR03410 urea_trans_UrtE urea 99.5 4.3E-14 9.4E-19 75.7 6.9 53 1-53 28-99 (230)
164 COG2274 SunT ABC-type bacterio 99.5 1.4E-14 3.1E-19 87.2 5.5 52 1-52 501-569 (709)
165 PRK13642 cbiO cobalt transport 99.5 2.6E-14 5.6E-19 78.4 6.0 75 1-75 35-129 (277)
166 PRK13543 cytochrome c biogenes 99.5 3.1E-14 6.8E-19 75.6 6.2 53 1-53 39-106 (214)
167 PRK10253 iron-enterobactin tra 99.5 2.7E-14 5.8E-19 77.9 6.0 52 1-52 35-104 (265)
168 TIGR01193 bacteriocin_ABC ABC- 99.5 2.6E-14 5.7E-19 86.2 6.5 51 2-52 503-570 (708)
169 COG4619 ABC-type uncharacteriz 99.5 1.5E-15 3.4E-20 77.7 1.1 53 1-53 31-100 (223)
170 PRK13633 cobalt transporter AT 99.5 2.9E-14 6.2E-19 78.3 6.1 75 1-75 38-133 (280)
171 PRK15093 antimicrobial peptide 99.5 2.6E-14 5.7E-19 80.0 6.0 75 1-75 35-144 (330)
172 PRK10790 putative multidrug tr 99.5 1.6E-14 3.5E-19 85.7 5.5 52 1-52 369-437 (592)
173 COG1137 YhbG ABC-type (unclass 99.5 5.9E-16 1.3E-20 80.9 -0.5 75 1-75 32-128 (243)
174 TIGR03411 urea_trans_UrtD urea 99.5 3.3E-14 7.1E-19 76.6 6.1 53 1-53 30-101 (242)
175 PRK14273 phosphate ABC transpo 99.5 3.8E-14 8.2E-19 76.9 6.4 53 1-53 35-111 (254)
176 COG4152 ABC-type uncharacteriz 99.5 8.6E-15 1.9E-19 78.6 3.8 75 1-75 30-119 (300)
177 cd03257 ABC_NikE_OppD_transpor 99.5 4.2E-14 9.1E-19 75.5 6.4 54 1-54 33-109 (228)
178 TIGR03740 galliderm_ABC gallid 99.5 4.3E-14 9.3E-19 75.4 6.4 52 1-52 28-93 (223)
179 PRK10744 pstB phosphate transp 99.5 5.1E-14 1.1E-18 76.6 6.7 53 1-53 41-117 (260)
180 cd03231 ABC_CcmA_heme_exporter 99.5 2.8E-14 6E-19 75.2 5.3 52 1-52 28-96 (201)
181 PRK13648 cbiO cobalt transport 99.5 4.4E-14 9.6E-19 77.2 6.3 75 1-75 37-131 (269)
182 TIGR00968 3a0106s01 sulfate AB 99.5 5.8E-14 1.3E-18 75.5 6.7 53 1-53 28-96 (237)
183 PRK14267 phosphate ABC transpo 99.5 5.4E-14 1.2E-18 76.2 6.6 53 1-53 32-109 (253)
184 TIGR03873 F420-0_ABC_ATP propo 99.5 5E-14 1.1E-18 76.5 6.4 52 1-52 29-98 (256)
185 TIGR02633 xylG D-xylose ABC tr 99.5 2.7E-14 5.8E-19 83.5 5.6 53 1-53 29-102 (500)
186 TIGR03796 NHPM_micro_ABC1 NHPM 99.5 3.2E-14 7E-19 85.9 6.0 50 2-51 508-574 (710)
187 PRK14235 phosphate transporter 99.5 7.7E-14 1.7E-18 76.2 6.8 53 1-53 47-123 (267)
188 cd03267 ABC_NatA_like Similar 99.5 6.6E-14 1.4E-18 75.3 6.4 52 1-52 49-118 (236)
189 PRK14263 phosphate ABC transpo 99.5 5.5E-14 1.2E-18 76.6 6.2 53 1-53 36-112 (261)
190 PRK11614 livF leucine/isoleuci 99.5 9.1E-14 2E-18 74.7 6.9 53 1-53 33-104 (237)
191 COG4559 ABC-type hemin transpo 99.5 2.7E-14 5.7E-19 75.4 4.7 56 1-56 29-102 (259)
192 TIGR03719 ABC_ABC_ChvD ATP-bin 99.5 2.2E-14 4.8E-19 84.7 4.9 52 1-52 33-91 (552)
193 cd03300 ABC_PotA_N PotA is an 99.5 7.7E-14 1.7E-18 74.8 6.6 75 1-75 28-119 (232)
194 cd03299 ABC_ModC_like Archeal 99.5 6.8E-14 1.5E-18 75.2 6.3 75 1-75 27-118 (235)
195 PRK09700 D-allose transporter 99.5 2.7E-14 6E-19 83.6 5.2 52 1-52 33-103 (510)
196 TIGR03797 NHPM_micro_ABC2 NHPM 99.5 2.9E-14 6.3E-19 85.8 5.4 52 1-52 481-549 (686)
197 PRK11174 cysteine/glutathione 99.5 3.7E-14 8.1E-19 84.1 5.6 51 1-52 378-445 (588)
198 PRK09984 phosphonate/organopho 99.5 7.8E-14 1.7E-18 76.0 6.5 53 1-53 32-110 (262)
199 COG4618 ArpD ABC-type protease 99.5 2.3E-14 4.9E-19 83.1 4.5 52 2-53 365-433 (580)
200 PRK10418 nikD nickel transport 99.5 8.4E-14 1.8E-18 75.6 6.5 41 1-41 31-88 (254)
201 TIGR00958 3a01208 Conjugate Tr 99.5 3.4E-14 7.3E-19 85.9 5.4 52 1-52 509-577 (711)
202 TIGR03269 met_CoM_red_A2 methy 99.5 5.5E-14 1.2E-18 82.5 6.1 26 1-26 28-55 (520)
203 PRK15134 microcin C ABC transp 99.5 6.3E-14 1.4E-18 82.4 6.3 75 1-75 37-142 (529)
204 PRK10982 galactose/methyl gala 99.5 3.5E-14 7.5E-19 82.9 5.2 53 1-53 26-97 (491)
205 TIGR01978 sufC FeS assembly AT 99.5 6.7E-14 1.5E-18 75.4 5.9 52 1-52 28-100 (243)
206 COG1134 TagH ABC-type polysacc 99.5 6.8E-14 1.5E-18 74.8 5.8 73 2-74 56-135 (249)
207 PRK14242 phosphate transporter 99.5 1E-13 2.3E-18 75.1 6.7 53 1-53 34-110 (253)
208 PRK11288 araG L-arabinose tran 99.5 6E-14 1.3E-18 82.1 6.0 75 1-75 32-129 (501)
209 PRK13541 cytochrome c biogenes 99.5 6.4E-14 1.4E-18 73.5 5.5 52 1-52 28-93 (195)
210 PRK14269 phosphate ABC transpo 99.5 1.6E-13 3.5E-18 74.2 7.1 52 1-52 30-101 (246)
211 KOG0061 Transporter, ABC super 99.5 1.5E-13 3.2E-18 82.1 7.6 77 1-77 58-157 (613)
212 PRK13657 cyclic beta-1,2-gluca 99.5 5.6E-14 1.2E-18 83.4 5.8 52 1-52 363-431 (588)
213 cd03234 ABCG_White The White s 99.5 1.4E-13 3E-18 73.6 6.8 53 1-53 35-105 (226)
214 PRK10762 D-ribose transporter 99.5 6.1E-14 1.3E-18 82.0 5.8 52 1-52 280-353 (501)
215 cd03230 ABC_DR_subfamily_A Thi 99.5 3E-14 6.5E-19 73.5 4.0 50 1-50 28-94 (173)
216 cd03252 ABCC_Hemolysin The ABC 99.5 3.7E-14 8.1E-19 76.2 4.5 51 1-51 30-97 (237)
217 PRK14270 phosphate ABC transpo 99.5 1.3E-13 2.8E-18 74.7 6.6 52 1-52 32-107 (251)
218 COG4172 ABC-type uncharacteriz 99.5 6.6E-14 1.4E-18 79.8 5.6 74 2-75 316-414 (534)
219 PF00005 ABC_tran: ABC transpo 99.5 5.3E-14 1.1E-18 70.0 4.7 43 1-43 13-70 (137)
220 PRK14268 phosphate ABC transpo 99.5 1.7E-13 3.7E-18 74.5 7.0 53 1-53 40-116 (258)
221 cd03245 ABCC_bacteriocin_expor 99.5 1.2E-13 2.7E-18 73.5 6.3 51 1-51 32-99 (220)
222 PRK14254 phosphate ABC transpo 99.5 1.3E-13 2.8E-18 76.0 6.6 53 1-53 67-143 (285)
223 PRK15134 microcin C ABC transp 99.5 7.3E-14 1.6E-18 82.2 5.9 75 1-75 314-413 (529)
224 cd03253 ABCC_ATM1_transporter 99.5 5.2E-14 1.1E-18 75.6 4.8 51 1-51 29-96 (236)
225 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.5 3E-14 6.4E-19 76.6 3.9 51 1-51 31-98 (238)
226 TIGR02323 CP_lyasePhnK phospho 99.5 1.1E-13 2.5E-18 75.0 6.2 26 1-26 31-56 (253)
227 PRK14256 phosphate ABC transpo 99.5 1.5E-13 3.2E-18 74.5 6.5 53 1-53 32-109 (252)
228 PRK14246 phosphate ABC transpo 99.5 1.9E-13 4.1E-18 74.4 6.9 54 1-54 38-115 (257)
229 TIGR02203 MsbA_lipidA lipid A 99.5 6.1E-14 1.3E-18 82.9 5.3 51 1-51 360-427 (571)
230 KOG0057 Mitochondrial Fe/S clu 99.5 1.3E-13 2.8E-18 80.5 6.4 50 2-51 381-446 (591)
231 PRK13547 hmuV hemin importer A 99.5 1.2E-13 2.6E-18 75.7 6.1 53 1-53 29-107 (272)
232 PRK14274 phosphate ABC transpo 99.5 1.8E-13 3.8E-18 74.5 6.6 52 1-52 40-115 (259)
233 PLN03211 ABC transporter G-25; 99.5 1.5E-13 3.2E-18 82.6 6.8 75 1-75 96-190 (659)
234 cd03251 ABCC_MsbA MsbA is an e 99.5 4.8E-14 1E-18 75.6 4.2 51 1-51 30-97 (234)
235 PRK15064 ABC transporter ATP-b 99.5 4.7E-14 1E-18 82.9 4.5 51 1-51 29-86 (530)
236 PRK09544 znuC high-affinity zi 99.5 3E-14 6.5E-19 77.3 3.5 43 1-43 32-78 (251)
237 TIGR02857 CydD thiol reductant 99.5 7.3E-14 1.6E-18 82.1 5.2 52 1-52 350-418 (529)
238 cd03254 ABCC_Glucan_exporter_l 99.5 7.7E-14 1.7E-18 74.6 4.9 51 1-51 31-98 (229)
239 TIGR00955 3a01204 The Eye Pigm 99.5 1.7E-13 3.6E-18 81.9 6.8 75 1-75 53-149 (617)
240 PRK10636 putative ABC transpor 99.5 7.6E-14 1.6E-18 83.6 5.3 41 1-41 340-384 (638)
241 PRK10419 nikE nickel transport 99.5 1.5E-13 3.2E-18 75.2 6.1 52 1-52 40-114 (268)
242 PRK14237 phosphate transporter 99.5 2.2E-13 4.7E-18 74.5 6.7 53 1-53 48-124 (267)
243 PRK14271 phosphate ABC transpo 99.5 1.2E-13 2.5E-18 75.9 5.5 53 1-53 49-124 (276)
244 COG0488 Uup ATPase components 99.5 8.5E-14 1.8E-18 81.8 5.3 54 1-54 31-91 (530)
245 PRK13540 cytochrome c biogenes 99.5 1.3E-13 2.8E-18 72.6 5.5 53 1-53 29-98 (200)
246 cd03291 ABCC_CFTR1 The CFTR su 99.5 5.7E-14 1.2E-18 77.3 4.1 50 1-51 65-119 (282)
247 cd03290 ABCC_SUR1_N The SUR do 99.5 6.9E-14 1.5E-18 74.4 4.3 52 1-52 29-101 (218)
248 TIGR03375 type_I_sec_LssB type 99.5 1.8E-13 3.9E-18 82.5 6.6 51 1-51 493-560 (694)
249 PRK14262 phosphate ABC transpo 99.5 2.7E-13 5.9E-18 73.4 6.7 53 1-53 31-107 (250)
250 PRK09700 D-allose transporter 99.5 1.1E-13 2.5E-18 81.1 5.5 52 1-52 291-364 (510)
251 cd03248 ABCC_TAP TAP, the Tran 99.5 6E-14 1.3E-18 74.9 4.0 51 1-51 42-109 (226)
252 PRK13539 cytochrome c biogenes 99.5 2.1E-13 4.5E-18 72.1 6.0 52 1-52 30-96 (207)
253 PRK14240 phosphate transporter 99.5 3.2E-13 6.9E-18 73.1 6.7 53 1-53 31-107 (250)
254 cd03244 ABCC_MRP_domain2 Domai 99.5 9.9E-14 2.1E-18 73.9 4.6 50 1-50 32-98 (221)
255 PRK15056 manganese/iron transp 99.5 4.8E-14 1E-18 77.2 3.5 42 1-42 35-88 (272)
256 cd03369 ABCC_NFT1 Domain 2 of 99.5 8.7E-14 1.9E-18 73.5 4.3 50 1-50 36-102 (207)
257 PRK13409 putative ATPase RIL; 99.5 1.7E-13 3.6E-18 81.6 5.9 51 1-52 367-423 (590)
258 cd03246 ABCC_Protease_Secretio 99.5 5.6E-14 1.2E-18 72.5 3.5 49 1-49 30-95 (173)
259 KOG0058 Peptide exporter, ABC 99.5 1.4E-13 3.1E-18 82.1 5.6 55 1-55 496-567 (716)
260 COG1132 MdlB ABC-type multidru 99.5 1.4E-13 3E-18 81.5 5.4 52 1-52 357-425 (567)
261 cd03215 ABC_Carb_Monos_II This 99.5 1E-13 2.2E-18 72.1 4.3 52 1-52 28-101 (182)
262 PRK14272 phosphate ABC transpo 99.5 2.5E-13 5.5E-18 73.6 6.0 54 1-54 32-110 (252)
263 cd03247 ABCC_cytochrome_bd The 99.5 1E-13 2.2E-18 71.8 4.2 50 1-50 30-95 (178)
264 cd03228 ABCC_MRP_Like The MRP 99.5 1.4E-13 3E-18 71.0 4.6 49 1-49 30-95 (171)
265 PRK14243 phosphate transporter 99.5 5.5E-13 1.2E-17 72.8 7.1 53 1-53 38-114 (264)
266 TIGR01257 rim_protein retinal- 99.5 2.4E-13 5.2E-18 88.8 6.5 75 1-75 1967-2059(2272)
267 PRK11160 cysteine/glutathione 99.5 1.9E-13 4.1E-18 81.1 5.7 51 1-51 368-435 (574)
268 PRK15439 autoinducer 2 ABC tra 99.5 2E-13 4.3E-18 80.1 5.7 51 1-51 291-363 (510)
269 TIGR03719 ABC_ABC_ChvD ATP-bin 99.5 2.1E-13 4.6E-18 80.6 5.9 54 1-54 350-411 (552)
270 PRK14248 phosphate ABC transpo 99.5 4.1E-13 8.8E-18 73.4 6.5 53 1-53 49-125 (268)
271 PRK14249 phosphate ABC transpo 99.5 5.6E-13 1.2E-17 72.2 7.0 53 1-53 32-108 (251)
272 PRK13549 xylose transporter AT 99.5 2E-13 4.3E-18 80.0 5.5 53 1-53 290-365 (506)
273 PRK14265 phosphate ABC transpo 99.5 3E-13 6.6E-18 74.2 5.9 52 1-52 48-123 (274)
274 PRK14238 phosphate transporter 99.5 5.9E-13 1.3E-17 72.9 7.0 53 1-53 52-128 (271)
275 PRK14251 phosphate ABC transpo 99.4 5.7E-13 1.2E-17 72.2 6.7 53 1-53 32-108 (251)
276 PRK14275 phosphate ABC transpo 99.4 6.6E-13 1.4E-17 73.2 6.8 53 1-53 67-143 (286)
277 PRK14244 phosphate ABC transpo 99.4 6.5E-13 1.4E-17 72.0 6.7 53 1-53 33-109 (251)
278 PRK13546 teichoic acids export 99.4 5E-13 1.1E-17 73.0 6.3 51 1-52 52-108 (264)
279 PRK14261 phosphate ABC transpo 99.4 6.1E-13 1.3E-17 72.2 6.6 53 1-53 34-110 (253)
280 PLN03073 ABC transporter F fam 99.4 2E-13 4.3E-18 82.7 5.1 41 1-41 537-581 (718)
281 cd03233 ABC_PDR_domain1 The pl 99.4 1.6E-13 3.5E-18 72.4 4.2 53 1-53 35-107 (202)
282 PRK14253 phosphate ABC transpo 99.4 3.8E-13 8.3E-18 72.8 5.6 53 1-53 31-106 (249)
283 PRK14258 phosphate ABC transpo 99.4 7.9E-13 1.7E-17 72.1 6.8 53 1-53 35-111 (261)
284 PRK14260 phosphate ABC transpo 99.4 6.6E-13 1.4E-17 72.3 6.4 53 1-53 35-111 (259)
285 PRK14245 phosphate ABC transpo 99.4 6.7E-13 1.4E-17 71.9 6.4 53 1-53 31-107 (250)
286 COG4988 CydD ABC-type transpor 99.4 3.3E-13 7.2E-18 79.0 5.4 50 2-51 350-416 (559)
287 cd03213 ABCG_EPDR ABCG transpo 99.4 2.7E-13 5.9E-18 71.1 4.7 52 1-52 37-105 (194)
288 COG4778 PhnL ABC-type phosphon 99.4 6.3E-14 1.4E-18 72.1 2.2 75 1-75 39-140 (235)
289 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.4 4.9E-13 1.1E-17 71.5 5.7 26 1-26 50-75 (224)
290 PRK11288 araG L-arabinose tran 99.4 1.5E-13 3.3E-18 80.4 4.1 52 1-52 281-354 (501)
291 TIGR02204 MsbA_rel ABC transpo 99.4 1.9E-13 4.2E-18 80.9 4.5 52 1-52 368-436 (576)
292 TIGR00954 3a01203 Peroxysomal 99.4 2.5E-13 5.5E-18 81.6 5.0 52 1-52 480-537 (659)
293 PRK15064 ABC transporter ATP-b 99.4 1.6E-13 3.6E-18 80.7 4.1 51 1-51 347-406 (530)
294 PRK11819 putative ABC transpor 99.4 2E-13 4.4E-18 80.8 4.4 53 1-53 352-412 (556)
295 PRK14239 phosphate transporter 99.4 8.6E-13 1.9E-17 71.5 6.4 53 1-53 33-109 (252)
296 PRK11147 ABC transporter ATPas 99.4 2.2E-13 4.8E-18 81.6 4.4 53 1-53 347-407 (635)
297 cd03232 ABC_PDR_domain2 The pl 99.4 3E-13 6.5E-18 70.9 4.4 52 1-52 35-102 (192)
298 PRK14266 phosphate ABC transpo 99.4 1.5E-12 3.2E-17 70.6 7.1 53 1-53 31-107 (250)
299 PRK14236 phosphate transporter 99.4 1E-12 2.3E-17 72.0 6.5 53 1-53 53-129 (272)
300 COG1101 PhnK ABC-type uncharac 99.4 3.1E-13 6.7E-18 71.6 4.2 55 1-55 34-108 (263)
301 TIGR01257 rim_protein retinal- 99.4 8.8E-13 1.9E-17 86.3 6.8 75 1-75 958-1050(2272)
302 PRK10535 macrolide transporter 99.4 1.2E-12 2.5E-17 78.7 6.9 75 1-75 36-133 (648)
303 PRK10789 putative multidrug tr 99.4 2.4E-13 5.3E-18 80.6 3.9 51 1-51 343-410 (569)
304 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.4 3.1E-13 6.8E-18 68.0 3.7 39 1-39 28-70 (144)
305 TIGR01271 CFTR_protein cystic 99.4 7.5E-13 1.6E-17 84.9 6.2 52 1-53 454-510 (1490)
306 TIGR00956 3a01205 Pleiotropic 99.4 9.6E-13 2.1E-17 84.0 6.6 75 1-75 791-886 (1394)
307 PRK14264 phosphate ABC transpo 99.4 1.3E-12 2.8E-17 72.7 6.3 53 1-53 73-149 (305)
308 TIGR02633 xylG D-xylose ABC tr 99.4 5.7E-13 1.2E-17 78.0 4.9 52 1-52 288-362 (500)
309 PRK14255 phosphate ABC transpo 99.4 1.6E-12 3.5E-17 70.5 6.3 53 1-53 33-109 (252)
310 TIGR01842 type_I_sec_PrtD type 99.4 4.3E-13 9.2E-18 79.2 4.1 51 1-51 346-413 (544)
311 cd03278 ABC_SMC_barmotin Barmo 99.4 9.2E-13 2E-17 69.3 4.9 43 1-43 24-87 (197)
312 PTZ00265 multidrug resistance 99.4 8.3E-13 1.8E-17 84.6 5.6 25 1-25 1196-1220(1466)
313 cd03288 ABCC_SUR2 The SUR doma 99.4 5.2E-13 1.1E-17 72.6 4.1 43 1-43 49-106 (257)
314 COG4172 ABC-type uncharacteriz 99.4 2.1E-12 4.7E-17 73.8 6.6 75 1-75 38-143 (534)
315 TIGR01846 type_I_sec_HlyB type 99.4 1.5E-12 3.2E-17 78.7 6.3 51 1-51 485-552 (694)
316 TIGR01192 chvA glucan exporter 99.4 9.1E-13 2E-17 78.4 5.3 52 1-52 363-431 (585)
317 COG0488 Uup ATPase components 99.4 7.4E-13 1.6E-17 77.9 4.8 42 2-43 351-396 (530)
318 cd03289 ABCC_CFTR2 The CFTR su 99.4 8.6E-13 1.9E-17 72.5 4.7 50 1-50 32-97 (275)
319 CHL00131 ycf16 sulfate ABC tra 99.4 2.9E-12 6.3E-17 69.5 6.6 22 1-22 35-56 (252)
320 PRK10636 putative ABC transpor 99.4 5.9E-13 1.3E-17 79.9 3.9 41 1-41 29-73 (638)
321 TIGR00957 MRP_assoc_pro multi 99.4 7.5E-13 1.6E-17 85.0 4.5 51 1-52 666-721 (1522)
322 PRK14257 phosphate ABC transpo 99.4 2.6E-12 5.7E-17 72.1 6.2 53 1-53 110-186 (329)
323 PRK15177 Vi polysaccharide exp 99.4 3.9E-13 8.4E-18 71.5 2.7 53 1-54 15-74 (213)
324 COG0396 sufC Cysteine desulfur 99.4 1.8E-12 3.9E-17 69.1 5.1 42 1-42 32-91 (251)
325 PTZ00243 ABC transporter; Prov 99.4 1.3E-12 2.8E-17 84.1 5.3 49 2-50 1339-1404(1560)
326 COG4608 AppF ABC-type oligopep 99.4 9.1E-13 2E-17 71.5 3.9 27 1-27 41-67 (268)
327 PLN03130 ABC transporter C fam 99.4 1.6E-12 3.4E-17 83.9 5.5 51 1-51 1267-1334(1622)
328 PLN03232 ABC transporter C fam 99.4 9.5E-13 2.1E-17 84.5 4.1 53 1-53 645-702 (1495)
329 PLN03232 ABC transporter C fam 99.4 1.4E-12 3.1E-17 83.7 4.9 50 1-50 1264-1330(1495)
330 PRK13545 tagH teichoic acids e 99.3 5.8E-12 1.3E-16 74.1 6.6 26 1-26 52-77 (549)
331 PRK10522 multidrug transporter 99.3 1.1E-12 2.4E-17 77.5 3.7 43 1-43 351-408 (547)
332 cd03229 ABC_Class3 This class 99.3 7.9E-13 1.7E-17 68.6 2.7 50 1-50 28-97 (178)
333 PLN03140 ABC transporter G fam 99.3 3.3E-12 7.3E-17 81.9 5.7 75 1-75 908-1003(1470)
334 PLN03130 ABC transporter C fam 99.3 1.8E-12 3.9E-17 83.7 4.5 52 1-52 645-701 (1622)
335 cd03236 ABC_RNaseL_inhibitor_d 99.3 9.1E-13 2E-17 71.7 2.7 26 1-26 28-53 (255)
336 KOG0055 Multidrug/pheromone ex 99.3 2.4E-12 5.2E-17 80.6 4.7 52 1-52 381-449 (1228)
337 TIGR01194 cyc_pep_trnsptr cycl 99.3 2.4E-12 5.2E-17 76.3 4.5 43 1-43 370-427 (555)
338 COG4107 PhnK ABC-type phosphon 99.3 8.4E-13 1.8E-17 68.4 2.2 26 1-26 34-59 (258)
339 PTZ00265 multidrug resistance 99.3 1.7E-12 3.7E-17 83.2 3.9 53 1-53 413-483 (1466)
340 cd03216 ABC_Carb_Monos_I This 99.3 1.2E-12 2.7E-17 67.0 2.7 26 1-26 28-53 (163)
341 PRK11147 ABC transporter ATPas 99.3 2E-12 4.4E-17 77.6 3.7 41 1-41 31-75 (635)
342 PTZ00243 ABC transporter; Prov 99.3 3.5E-12 7.5E-17 82.2 4.9 52 1-52 688-743 (1560)
343 PRK09580 sufC cysteine desulfu 99.3 1.7E-12 3.8E-17 70.1 3.0 42 1-42 29-88 (248)
344 KOG0055 Multidrug/pheromone ex 99.3 8.4E-12 1.8E-16 78.3 6.1 52 2-53 1019-1087(1228)
345 cd03217 ABC_FeS_Assembly ABC-t 99.3 2E-12 4.3E-17 68.2 2.8 42 1-42 28-87 (200)
346 PRK10982 galactose/methyl gala 99.3 1.9E-12 4.1E-17 75.7 2.9 41 1-41 276-332 (491)
347 cd03214 ABC_Iron-Siderophores_ 99.3 2.1E-12 4.6E-17 67.1 2.7 26 1-26 27-52 (180)
348 PF00931 NB-ARC: NB-ARC domain 99.3 4.8E-11 1.1E-15 65.5 7.9 75 1-75 21-99 (287)
349 COG4987 CydC ABC-type transpor 99.3 5.5E-12 1.2E-16 73.7 4.3 50 2-51 367-433 (573)
350 TIGR01271 CFTR_protein cystic 99.3 1E-11 2.3E-16 79.8 5.7 49 2-50 1248-1312(1490)
351 TIGR00957 MRP_assoc_pro multi 99.3 5.5E-12 1.2E-16 81.2 4.1 50 1-50 1314-1380(1522)
352 PRK10938 putative molybdenum t 99.3 3.3E-12 7.1E-17 74.7 2.7 26 1-26 31-56 (490)
353 COG4586 ABC-type uncharacteriz 99.2 6.4E-12 1.4E-16 68.6 3.1 26 1-26 52-77 (325)
354 PRK13409 putative ATPase RIL; 99.2 4.4E-12 9.6E-17 75.6 2.6 26 1-26 101-126 (590)
355 PLN03140 ABC transporter G fam 99.2 1.9E-11 4.1E-16 78.6 5.4 54 1-54 193-264 (1470)
356 TIGR00956 3a01205 Pleiotropic 99.2 2.9E-11 6.3E-16 77.5 6.1 54 1-54 89-163 (1394)
357 COG4133 CcmA ABC-type transpor 99.2 8.9E-12 1.9E-16 64.8 2.8 25 2-26 31-55 (209)
358 cd00820 PEPCK_HprK Phosphoenol 99.2 1.7E-11 3.7E-16 58.8 3.6 52 1-52 17-77 (107)
359 KOG0056 Heavy metal exporter H 99.2 7.6E-12 1.6E-16 73.3 2.6 50 1-50 566-632 (790)
360 COG4674 Uncharacterized ABC-ty 99.2 6.1E-12 1.3E-16 66.1 1.9 74 2-75 34-136 (249)
361 cd01128 rho_factor Transcripti 99.2 1.4E-10 3.1E-15 63.0 7.1 49 2-51 19-69 (249)
362 cd03238 ABC_UvrA The excision 99.2 1.3E-11 2.7E-16 64.1 2.7 21 1-21 23-43 (176)
363 cd00267 ABC_ATPase ABC (ATP-bi 99.2 1.4E-11 3E-16 62.7 2.7 26 1-26 27-52 (157)
364 TIGR00235 udk uridine kinase. 99.2 2E-11 4.4E-16 64.6 3.4 25 1-25 8-32 (207)
365 PRK14252 phosphate ABC transpo 99.2 1.3E-11 2.9E-16 67.4 2.7 53 1-53 44-122 (265)
366 KOG0059 Lipid exporter ABCA1 a 99.2 4E-11 8.7E-16 74.3 5.0 75 1-75 593-687 (885)
367 KOG0927 Predicted transporter 99.2 2.4E-11 5.1E-16 71.3 3.6 25 2-26 419-443 (614)
368 COG1119 ModF ABC-type molybden 99.2 8.6E-11 1.9E-15 63.3 5.4 25 2-26 60-84 (257)
369 KOG0065 Pleiotropic drug resis 99.2 5.4E-11 1.2E-15 75.2 4.9 77 2-78 820-918 (1391)
370 PRK10938 putative molybdenum t 99.2 1.9E-11 4.1E-16 71.6 2.5 25 1-25 288-312 (490)
371 PLN03073 ABC transporter F fam 99.2 4.9E-11 1.1E-15 72.5 4.2 39 1-40 205-243 (718)
372 cd03273 ABC_SMC2_euk Eukaryoti 99.2 3.6E-11 7.8E-16 65.3 3.2 25 1-25 27-51 (251)
373 cd03272 ABC_SMC3_euk Eukaryoti 99.1 4.1E-11 8.9E-16 64.7 3.2 22 1-22 25-46 (243)
374 COG4604 CeuD ABC-type enteroch 99.1 4.2E-11 9.1E-16 63.1 3.0 26 1-26 29-54 (252)
375 PRK05480 uridine/cytidine kina 99.1 8.8E-11 1.9E-15 62.2 3.8 23 1-23 8-30 (209)
376 cd03283 ABC_MutS-like MutS-lik 99.1 6.3E-11 1.4E-15 62.6 2.8 24 1-24 27-50 (199)
377 cd02025 PanK Pantothenate kina 99.1 8.1E-11 1.7E-15 63.0 3.1 25 1-25 1-25 (220)
378 PRK10078 ribose 1,5-bisphospho 99.1 6.9E-11 1.5E-15 61.7 2.7 26 1-26 4-29 (186)
379 cd02023 UMPK Uridine monophosp 99.1 9.4E-11 2E-15 61.7 3.2 23 1-23 1-23 (198)
380 cd03274 ABC_SMC4_euk Eukaryoti 99.1 7.6E-11 1.7E-15 62.8 2.8 20 1-20 27-46 (212)
381 cd01130 VirB11-like_ATPase Typ 99.1 1.1E-10 2.4E-15 61.0 3.0 25 2-26 28-52 (186)
382 PRK09270 nucleoside triphospha 99.1 1.2E-10 2.7E-15 62.5 2.8 26 1-26 35-60 (229)
383 PRK09825 idnK D-gluconate kina 99.0 2E-10 4.3E-15 59.6 3.0 26 1-26 5-30 (176)
384 COG4178 ABC-type uncharacteriz 99.0 7.5E-10 1.6E-14 66.1 5.4 51 2-52 422-478 (604)
385 cd02026 PRK Phosphoribulokinas 99.0 2.8E-10 6E-15 62.6 3.4 26 1-26 1-26 (273)
386 KOG0054 Multidrug resistance-a 99.0 2.4E-10 5.3E-15 72.9 3.5 53 1-54 549-606 (1381)
387 PF13555 AAA_29: P-loop contai 99.0 3.9E-10 8.6E-15 49.2 3.1 24 2-25 26-49 (62)
388 TIGR00554 panK_bact pantothena 99.0 2.1E-10 4.5E-15 63.6 2.7 24 1-24 64-87 (290)
389 COG4615 PvdE ABC-type sideroph 99.0 1.6E-09 3.4E-14 62.4 6.0 25 2-26 352-376 (546)
390 KOG0064 Peroxisomal long-chain 99.0 4.9E-10 1.1E-14 66.2 4.0 41 2-42 511-555 (728)
391 PRK07261 topology modulation p 99.0 2.2E-09 4.7E-14 55.6 6.0 24 2-25 3-26 (171)
392 cd03240 ABC_Rad50 The catalyti 99.0 2.7E-10 6E-15 60.3 2.6 26 1-26 24-53 (204)
393 cd03279 ABC_sbcCD SbcCD and ot 99.0 1.8E-10 3.9E-15 61.3 1.9 22 1-22 30-51 (213)
394 KOG0060 Long-chain acyl-CoA tr 99.0 7.6E-10 1.6E-14 65.6 4.6 53 2-54 464-525 (659)
395 TIGR03015 pepcterm_ATPase puta 99.0 1.2E-08 2.6E-13 55.8 8.8 24 2-25 46-69 (269)
396 COG1245 Predicted ATPase, RNas 99.0 5.7E-10 1.2E-14 64.9 3.7 40 1-40 369-409 (591)
397 TIGR02322 phosphon_PhnN phosph 99.0 4.3E-10 9.3E-15 58.3 2.9 24 1-24 3-26 (179)
398 cd03275 ABC_SMC1_euk Eukaryoti 99.0 5.5E-10 1.2E-14 60.7 3.2 25 1-25 24-48 (247)
399 COG4138 BtuD ABC-type cobalami 99.0 3.8E-10 8.3E-15 58.7 2.4 25 2-26 28-52 (248)
400 PF13207 AAA_17: AAA domain; P 99.0 4.7E-10 1E-14 54.7 2.6 23 1-23 1-23 (121)
401 PRK00300 gmk guanylate kinase; 99.0 4.8E-10 1E-14 59.2 2.9 24 1-24 7-30 (205)
402 TIGR00767 rho transcription te 99.0 7.5E-09 1.6E-13 59.6 7.6 51 2-53 171-223 (415)
403 COG5265 ATM1 ABC-type transpor 99.0 1.8E-09 3.8E-14 62.3 5.0 50 2-51 292-358 (497)
404 COG4170 SapD ABC-type antimicr 99.0 2.5E-09 5.5E-14 57.2 5.1 54 1-54 35-116 (330)
405 cd03243 ABC_MutS_homologs The 99.0 5.6E-10 1.2E-14 59.0 2.6 22 1-22 31-52 (202)
406 TIGR03263 guanyl_kin guanylate 99.0 6E-10 1.3E-14 57.7 2.7 24 1-24 3-26 (180)
407 cd03280 ABC_MutS2 MutS2 homolo 98.9 6.1E-10 1.3E-14 58.8 2.5 20 1-20 30-49 (200)
408 cd00071 GMPK Guanosine monopho 98.9 1.1E-09 2.3E-14 54.9 3.2 25 1-25 1-25 (137)
409 PLN02796 D-glycerate 3-kinase 98.9 7.4E-10 1.6E-14 62.5 2.9 26 1-26 102-127 (347)
410 PRK06995 flhF flagellar biosyn 98.9 4E-09 8.6E-14 61.9 5.4 50 1-52 258-307 (484)
411 TIGR03238 dnd_assoc_3 dnd syst 98.9 7.2E-10 1.6E-14 64.8 2.1 24 1-26 34-57 (504)
412 PF00485 PRK: Phosphoribulokin 98.9 1.3E-09 2.8E-14 57.3 2.7 26 1-26 1-26 (194)
413 KOG0066 eIF2-interacting prote 98.9 1.6E-09 3.4E-14 63.4 3.1 40 2-41 616-659 (807)
414 PRK08118 topology modulation p 98.9 2.3E-09 4.9E-14 55.3 3.3 25 2-26 4-28 (167)
415 PRK10751 molybdopterin-guanine 98.9 1.7E-09 3.8E-14 56.0 2.7 25 1-25 8-32 (173)
416 PRK09376 rho transcription ter 98.9 1.5E-08 3.3E-13 58.2 6.5 49 2-51 172-222 (416)
417 PTZ00301 uridine kinase; Provi 98.8 3E-09 6.6E-14 56.7 2.8 23 1-23 5-27 (210)
418 PLN03046 D-glycerate 3-kinase; 98.8 3.2E-09 6.9E-14 61.4 2.9 26 1-26 214-239 (460)
419 TIGR02858 spore_III_AA stage I 98.8 3.5E-09 7.6E-14 58.3 3.0 25 2-26 114-138 (270)
420 PRK07429 phosphoribulokinase; 98.8 3.9E-09 8.5E-14 59.4 2.9 26 1-26 10-35 (327)
421 cd03270 ABC_UvrA_I The excisio 98.8 2.6E-09 5.7E-14 57.4 2.1 16 1-16 23-38 (226)
422 TIGR01360 aden_kin_iso1 adenyl 98.8 4.1E-09 8.8E-14 54.9 2.6 20 1-20 5-24 (188)
423 cd02019 NK Nucleoside/nucleoti 98.8 8.1E-09 1.7E-13 46.1 3.2 23 1-23 1-23 (69)
424 PF13401 AAA_22: AAA domain; P 98.8 7.7E-08 1.7E-12 47.4 7.0 75 1-75 6-84 (131)
425 TIGR00101 ureG urease accessor 98.8 6.3E-09 1.4E-13 55.0 3.3 25 2-26 4-28 (199)
426 PRK08233 hypothetical protein; 98.8 5.5E-09 1.2E-13 54.1 2.8 24 1-24 5-28 (182)
427 cd01131 PilT Pilus retraction 98.8 6E-09 1.3E-13 55.0 2.9 25 1-25 3-27 (198)
428 cd04155 Arl3 Arl3 subfamily. 98.8 6E-09 1.3E-13 53.5 2.8 21 2-22 17-37 (173)
429 cd04159 Arl10_like Arl10-like 98.8 6E-09 1.3E-13 52.4 2.6 21 2-22 2-22 (159)
430 PF03193 DUF258: Protein of un 98.8 6.5E-09 1.4E-13 53.3 2.7 23 2-24 38-60 (161)
431 TIGR02788 VirB11 P-type DNA tr 98.8 7.1E-09 1.5E-13 58.0 3.0 25 2-26 147-171 (308)
432 PLN02318 phosphoribulokinase/u 98.8 5.9E-09 1.3E-13 62.5 2.7 24 1-24 67-90 (656)
433 PF01926 MMR_HSR1: 50S ribosom 98.8 8.4E-09 1.8E-13 50.1 2.8 21 2-22 2-22 (116)
434 KOG0062 ATPase component of AB 98.8 5.3E-09 1.2E-13 61.5 2.4 20 2-21 109-128 (582)
435 TIGR01313 therm_gnt_kin carboh 98.8 7.7E-09 1.7E-13 52.9 2.8 23 2-24 1-23 (163)
436 cd04104 p47_IIGP_like p47 (47- 98.8 8.7E-09 1.9E-13 54.3 3.0 23 2-24 4-26 (197)
437 KOG0054 Multidrug resistance-a 98.8 9.9E-09 2.1E-13 66.0 3.7 42 2-43 1169-1225(1381)
438 PTZ00202 tuzin; Provisional 98.7 1.5E-07 3.4E-12 55.2 7.9 48 1-56 288-335 (550)
439 COG0572 Udk Uridine kinase [Nu 98.7 9.5E-09 2.1E-13 54.8 2.8 25 1-25 10-34 (218)
440 PF10662 PduV-EutP: Ethanolami 98.7 1E-08 2.3E-13 51.6 2.6 23 2-24 4-26 (143)
441 cd03284 ABC_MutS1 MutS1 homolo 98.7 1E-08 2.2E-13 54.9 2.7 22 1-22 32-53 (216)
442 smart00382 AAA ATPases associa 98.7 1.5E-08 3.2E-13 49.8 3.1 25 2-26 5-29 (148)
443 cd03281 ABC_MSH5_euk MutS5 hom 98.7 1E-08 2.3E-13 54.7 2.6 20 2-21 32-51 (213)
444 PRK03846 adenylylsulfate kinas 98.7 1.2E-08 2.7E-13 53.8 2.8 25 1-25 26-50 (198)
445 TIGR02524 dot_icm_DotB Dot/Icm 98.7 1.3E-08 2.7E-13 58.1 3.0 24 1-24 136-159 (358)
446 cd03276 ABC_SMC6_euk Eukaryoti 98.7 1.3E-08 2.8E-13 53.8 2.8 21 2-22 24-44 (198)
447 cd01120 RecA-like_NTPases RecA 98.7 7.3E-08 1.6E-12 48.7 5.5 25 1-25 1-25 (165)
448 PF13476 AAA_23: AAA domain; P 98.7 1.1E-08 2.3E-13 53.5 2.5 22 2-23 22-43 (202)
449 cd02024 NRK1 Nicotinamide ribo 98.7 1.8E-08 4E-13 52.8 3.2 23 1-23 1-23 (187)
450 PRK14721 flhF flagellar biosyn 98.7 1.3E-08 2.8E-13 59.0 2.8 23 1-23 193-215 (420)
451 TIGR00606 rad50 rad50. This fa 98.7 1E-08 2.2E-13 66.0 2.6 26 1-26 30-59 (1311)
452 cd02028 UMPK_like Uridine mono 98.7 2.1E-08 4.5E-13 52.3 3.1 24 1-24 1-24 (179)
453 smart00534 MUTSac ATPase domai 98.7 1.9E-08 4.1E-13 52.6 3.0 20 1-20 1-20 (185)
454 cd01876 YihA_EngB The YihA (En 98.7 1.5E-08 3.3E-13 51.3 2.6 19 2-20 2-20 (170)
455 PRK10416 signal recognition pa 98.7 1.5E-08 3.3E-13 57.0 2.7 26 1-26 116-141 (318)
456 TIGR00017 cmk cytidylate kinas 98.7 1.8E-08 3.9E-13 54.0 2.9 24 1-24 4-27 (217)
457 cd01854 YjeQ_engC YjeQ/EngC. 98.7 1.7E-08 3.7E-13 56.0 2.8 26 1-26 163-188 (287)
458 COG0563 Adk Adenylate kinase a 98.7 2.3E-08 4.9E-13 52.2 3.1 24 2-25 3-26 (178)
459 cd03282 ABC_MSH4_euk MutS4 hom 98.7 1.7E-08 3.7E-13 53.6 2.7 22 2-23 32-53 (204)
460 cd03227 ABC_Class2 ABC-type Cl 98.7 1.7E-08 3.7E-13 51.8 2.6 22 2-23 24-45 (162)
461 PRK06696 uridine kinase; Valid 98.7 1.9E-08 4.1E-13 54.0 2.8 24 1-24 24-47 (223)
462 PRK06547 hypothetical protein; 98.7 1.9E-08 4.2E-13 52.1 2.7 23 1-23 17-39 (172)
463 PF13671 AAA_33: AAA domain; P 98.7 1.9E-08 4.2E-13 50.3 2.6 24 1-24 1-24 (143)
464 PRK05541 adenylylsulfate kinas 98.7 2.2E-08 4.7E-13 51.9 2.9 24 1-24 9-32 (176)
465 PF08477 Miro: Miro-like prote 98.7 2.9E-08 6.2E-13 48.2 3.1 24 2-25 2-25 (119)
466 PTZ00132 GTP-binding nuclear p 98.7 2.3E-08 4.9E-13 53.2 2.9 24 2-25 12-36 (215)
467 COG0194 Gmk Guanylate kinase [ 98.7 2.1E-08 4.5E-13 52.3 2.6 22 2-23 7-28 (191)
468 TIGR00176 mobB molybdopterin-g 98.7 3E-08 6.6E-13 50.6 3.2 25 1-25 1-25 (155)
469 PRK13949 shikimate kinase; Pro 98.7 2.8E-08 6.1E-13 51.4 3.1 23 2-24 4-26 (169)
470 PRK05057 aroK shikimate kinase 98.7 2.8E-08 6.1E-13 51.5 3.0 23 2-24 7-29 (172)
471 KOG0927 Predicted transporter 98.7 1.9E-08 4.2E-13 59.5 2.7 25 2-26 104-128 (614)
472 PRK14738 gmk guanylate kinase; 98.7 2.1E-08 4.5E-13 53.3 2.6 21 2-22 16-36 (206)
473 PRK06217 hypothetical protein; 98.7 2.8E-08 6.2E-13 51.8 3.1 24 2-25 4-27 (183)
474 PRK00098 GTPase RsgA; Reviewed 98.6 2.4E-08 5.3E-13 55.7 2.8 26 1-26 166-191 (298)
475 COG3910 Predicted ATPase [Gene 98.6 2.8E-08 6.2E-13 52.2 2.7 23 1-23 39-61 (233)
476 PRK10463 hydrogenase nickel in 98.6 3.3E-08 7.1E-13 54.9 3.0 26 1-26 106-131 (290)
477 cd01672 TMPK Thymidine monopho 98.6 3.4E-08 7.4E-13 51.6 2.9 25 1-25 2-26 (200)
478 PF13304 AAA_21: AAA domain; P 98.6 5.9E-09 1.3E-13 55.8 0.0 22 1-22 1-22 (303)
479 PLN02348 phosphoribulokinase 98.6 3.1E-08 6.6E-13 56.9 2.8 24 1-24 51-74 (395)
480 TIGR02168 SMC_prok_B chromosom 98.6 2.6E-08 5.6E-13 63.0 2.7 24 1-24 25-51 (1179)
481 cd01898 Obg Obg subfamily. Th 98.6 3.5E-08 7.5E-13 50.4 2.8 22 2-23 3-24 (170)
482 COG1245 Predicted ATPase, RNas 98.6 2.8E-08 6.1E-13 58.2 2.6 26 1-26 102-127 (591)
483 PRK14731 coaE dephospho-CoA ki 98.6 3.4E-08 7.3E-13 52.6 2.7 22 1-22 7-28 (208)
484 PRK06762 hypothetical protein; 98.6 4E-08 8.8E-13 50.4 2.8 23 1-23 4-26 (166)
485 PRK11545 gntK gluconate kinase 98.6 2.6E-08 5.7E-13 51.2 2.1 20 5-24 1-20 (163)
486 cd03239 ABC_SMC_head The struc 98.6 4.1E-08 8.8E-13 51.2 2.8 21 2-22 25-45 (178)
487 PRK13695 putative NTPase; Prov 98.6 4.4E-08 9.6E-13 50.7 2.9 23 2-24 3-25 (174)
488 PF00004 AAA: ATPase family as 98.6 5.9E-08 1.3E-12 47.7 3.2 23 2-24 1-23 (132)
489 PRK14737 gmk guanylate kinase; 98.6 4.1E-08 8.8E-13 51.5 2.7 23 1-23 6-28 (186)
490 PF13238 AAA_18: AAA domain; P 98.6 5.6E-08 1.2E-12 47.6 3.0 22 2-23 1-22 (129)
491 PRK13851 type IV secretion sys 98.6 4.7E-08 1E-12 55.5 3.0 25 2-26 165-189 (344)
492 cd01878 HflX HflX subfamily. 98.6 4.8E-08 1E-12 51.5 2.9 22 2-23 44-65 (204)
493 cd02020 CMPK Cytidine monophos 98.6 6.5E-08 1.4E-12 48.5 3.2 23 1-23 1-23 (147)
494 PRK07196 fliI flagellum-specif 98.6 3E-08 6.4E-13 57.7 2.2 26 1-26 157-182 (434)
495 cd02027 APSK Adenosine 5'-phos 98.6 6.7E-08 1.5E-12 49.0 3.2 24 1-24 1-24 (149)
496 cd02029 PRK_like Phosphoribulo 98.6 6.1E-08 1.3E-12 53.3 3.1 24 1-24 1-24 (277)
497 cd04129 Rho2 Rho2 subfamily. 98.6 5.5E-08 1.2E-12 50.8 2.9 19 2-20 4-22 (187)
498 PLN03210 Resistant to P. syrin 98.6 4.1E-08 8.9E-13 62.7 2.7 25 1-25 209-233 (1153)
499 KOG2355 Predicted ABC-type tra 98.6 2.9E-08 6.3E-13 53.1 1.7 21 3-23 44-64 (291)
500 PRK00889 adenylylsulfate kinas 98.6 5.6E-08 1.2E-12 50.3 2.7 25 1-25 6-30 (175)
No 1
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.87 E-value=2.4e-22 Score=111.43 Aligned_cols=75 Identities=23% Similarity=0.287 Sum_probs=59.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC----------cEEEEEecCCc---cHHHHHHHHHHHhcCC-CChhhH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD----------EVGIATVSQDP---DIIKVQGELAKSLGWA-LNEKDE 63 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~----------~~~~~~v~q~~---~~~~v~~~i~~~~~~~-~~~~~~ 63 (79)
+++|+||||||||||+|+|+|+++|+. .++ .+.+++|||+| +.+++.+|+...+... .+..+.
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei 110 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEI 110 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHH
Confidence 478999999999999999999999983 233 25799999998 5589999999998654 344555
Q ss_pred HHHHHHHHHHHh
Q 044571 64 KERADRLRLMFS 75 (79)
Q Consensus 64 ~~~~~~l~~~l~ 75 (79)
++++.+..+.|+
T Consensus 111 ~~rV~eva~~L~ 122 (338)
T COG3839 111 DKRVKEVAKLLG 122 (338)
T ss_pred HHHHHHHHHHcC
Confidence 667777777765
No 2
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=3.4e-22 Score=106.36 Aligned_cols=75 Identities=23% Similarity=0.311 Sum_probs=58.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-------EEEEEecCCc---cHHHHHHHHHHHhcCC-CChhhHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-------VGIATVSQDP---DIIKVQGELAKSLGWA-LNEKDEKER 66 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-------~~~~~v~q~~---~~~~v~~~i~~~~~~~-~~~~~~~~~ 66 (79)
+++|+||||||||||+|+|.|+.+|+. .+++ ..++||||++ ++.++.+|+...+... ....+..++
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~ 110 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARER 110 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccchHhHHHH
Confidence 579999999999999999999999983 1222 3689999998 5689999998877643 334444557
Q ss_pred HHHHHHHHh
Q 044571 67 ADRLRLMFS 75 (79)
Q Consensus 67 ~~~l~~~l~ 75 (79)
+.++++.++
T Consensus 111 a~~~L~~Vg 119 (248)
T COG1116 111 AKELLELVG 119 (248)
T ss_pred HHHHHHHcC
Confidence 888888876
No 3
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.87 E-value=3.8e-22 Score=111.14 Aligned_cols=75 Identities=23% Similarity=0.232 Sum_probs=59.5
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC----------cEEEEEecCCc---cHHHHHHHHHHHhcCCC--Chhh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD----------EVGIATVSQDP---DIIKVQGELAKSLGWAL--NEKD 62 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~----------~~~~~~v~q~~---~~~~v~~~i~~~~~~~~--~~~~ 62 (79)
+++++|||||||||++|+|.|+..|+. .++ .+.+++|||++ +.+++.+||...+.... ...+
T Consensus 33 f~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~ 112 (352)
T COG3842 33 FVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAE 112 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHH
Confidence 468999999999999999999999983 222 35789999998 56899999999987322 2334
Q ss_pred HHHHHHHHHHHHh
Q 044571 63 EKERADRLRLMFS 75 (79)
Q Consensus 63 ~~~~~~~l~~~l~ 75 (79)
..+++.++++.++
T Consensus 113 i~~rv~e~L~lV~ 125 (352)
T COG3842 113 IKARVEEALELVG 125 (352)
T ss_pred HHHHHHHHHHHcC
Confidence 5568888888876
No 4
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=1.6e-21 Score=102.19 Aligned_cols=75 Identities=19% Similarity=0.174 Sum_probs=59.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-------------EEEEEecCCccH---HHHHHHHHHHhc--CCCC
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-------------VGIATVSQDPDI---IKVQGELAKSLG--WALN 59 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-------------~~~~~v~q~~~~---~~v~~~i~~~~~--~~~~ 59 (79)
+++|+||||||||||+|||+++.+++. .+++ +.+++|||+|++ +++.+|+..... .+.+
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~ 109 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLS 109 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCC
Confidence 478999999999999999999999983 2333 257899999865 799999988652 3455
Q ss_pred hhhHHHHHHHHHHHHh
Q 044571 60 EKDEKERADRLRLMFS 75 (79)
Q Consensus 60 ~~~~~~~~~~l~~~l~ 75 (79)
..+.++++.++++.++
T Consensus 110 k~eA~~~A~~lL~~VG 125 (240)
T COG1126 110 KAEAREKALELLEKVG 125 (240)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 6667778899999887
No 5
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.84 E-value=3.1e-21 Score=102.15 Aligned_cols=75 Identities=23% Similarity=0.263 Sum_probs=56.0
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC----------------cEEEEEecCCccH---HHHHHHHHHHhcCCC
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD----------------EVGIATVSQDPDI---IKVQGELAKSLGWAL 58 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~----------------~~~~~~v~q~~~~---~~v~~~i~~~~~~~~ 58 (79)
+++|+||||||||||+++|.++.+|+. .++ ...+++|||++++ +++.+|+...+....
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~ 112 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG 112 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcC
Confidence 479999999999999999999999972 122 2469999999966 689999987764332
Q ss_pred Chh-hHHHHHHHHHHHHh
Q 044571 59 NEK-DEKERADRLRLMFS 75 (79)
Q Consensus 59 ~~~-~~~~~~~~l~~~l~ 75 (79)
... ...+.+..+++.++
T Consensus 113 ~~~~~~~~~~~~l~~~lg 130 (226)
T COG1136 113 KSAGRRKRAAEELLEVLG 130 (226)
T ss_pred CChhHHHHHHHHHHHhcC
Confidence 222 34456667777655
No 6
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.82 E-value=4.3e-20 Score=100.93 Aligned_cols=75 Identities=23% Similarity=0.298 Sum_probs=58.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---------CCC-------cEEEEEecCCcc---HHHHHHHHHHHhcCC---C
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---------IFD-------EVGIATVSQDPD---IIKVQGELAKSLGWA---L 58 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---------~~~-------~~~~~~v~q~~~---~~~v~~~i~~~~~~~---~ 58 (79)
.+++.||||||||||+++|.|++.|+. .|+ .+.+++|||+|. .+++.+||...+... .
T Consensus 30 ~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p 109 (345)
T COG1118 30 LVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERP 109 (345)
T ss_pred EEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcccccccCC
Confidence 378999999999999999999999982 122 247999999984 479999999988543 3
Q ss_pred ChhhHHHHHHHHHHHHh
Q 044571 59 NEKDEKERADRLRLMFS 75 (79)
Q Consensus 59 ~~~~~~~~~~~l~~~l~ 75 (79)
+..+...++.++++.+.
T Consensus 110 ~~~~~r~rv~elL~lvq 126 (345)
T COG1118 110 SEAEIRARVEELLRLVQ 126 (345)
T ss_pred ChhhHHHHHHHHHHHhc
Confidence 33455567888887765
No 7
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.80 E-value=9.7e-20 Score=99.61 Aligned_cols=75 Identities=23% Similarity=0.271 Sum_probs=61.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc---------------EEEEEecCCccH---HHHHHHHHHHhcC-CC
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE---------------VGIATVSQDPDI---IKVQGELAKSLGW-AL 58 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~---------------~~~~~v~q~~~~---~~v~~~i~~~~~~-~~ 58 (79)
++||+|.||+|||||+|+++++.+|+. ..++ +.++++||+|++ .++.+|+..++.. +.
T Consensus 34 I~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~ 113 (339)
T COG1135 34 IFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGV 113 (339)
T ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcCC
Confidence 479999999999999999999999982 1222 369999999987 5899999998864 34
Q ss_pred ChhhHHHHHHHHHHHHh
Q 044571 59 NEKDEKERADRLRLMFS 75 (79)
Q Consensus 59 ~~~~~~~~~~~l~~~l~ 75 (79)
+..+..+++.++++.++
T Consensus 114 ~k~ei~~RV~elLelVg 130 (339)
T COG1135 114 PKAEIKQRVAELLELVG 130 (339)
T ss_pred CHHHHHHHHHHHHHHcC
Confidence 55667779999999887
No 8
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.80 E-value=2.2e-19 Score=92.77 Aligned_cols=74 Identities=23% Similarity=0.196 Sum_probs=59.2
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhcccC------------------CCCcEEEEEecCCccH---HHHHHHHHHHhcC-CCC
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQEK------------------IFDEVGIATVSQDPDI---IKVQGELAKSLGW-ALN 59 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~~------------------~~~~~~~~~v~q~~~~---~~v~~~i~~~~~~-~~~ 59 (79)
+-++||||+|||||+|+|++..+|+. .|-.+.+++||||+.+ .++.+|+...+.. +.+
T Consensus 31 ~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~ 110 (223)
T COG2884 31 VFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKP 110 (223)
T ss_pred EEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhccCCC
Confidence 56899999999999999999999982 1223579999999955 6899999988754 445
Q ss_pred hhhHHHHHHHHHHHHh
Q 044571 60 EKDEKERADRLRLMFS 75 (79)
Q Consensus 60 ~~~~~~~~~~l~~~l~ 75 (79)
..+..+++.+.++.++
T Consensus 111 ~~~i~~rV~~~L~~Vg 126 (223)
T COG2884 111 PREIRRRVSEVLDLVG 126 (223)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5566678888888876
No 9
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=5.6e-19 Score=94.91 Aligned_cols=78 Identities=24% Similarity=0.270 Sum_probs=53.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC----CCC--------cEEEEEecCCccH-----HHHHHHHHHHhcCC-----C
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK----IFD--------EVGIATVSQDPDI-----IKVQGELAKSLGWA-----L 58 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~----~~~--------~~~~~~v~q~~~~-----~~v~~~i~~~~~~~-----~ 58 (79)
+++|+||||+|||||+|+|.|+++|.. .+. ...++||||..+. .++.+-+....... .
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~ 111 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRR 111 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccccc
Confidence 478999999999999999999998872 111 2479999996522 47777776653221 1
Q ss_pred ChhhHHHHHHHHHHHHh-hhc
Q 044571 59 NEKDEKERADRLRLMFS-ERY 78 (79)
Q Consensus 59 ~~~~~~~~~~~l~~~l~-~~~ 78 (79)
......+.+.+.++.++ ..|
T Consensus 112 ~~~~d~~~v~~aL~~Vgm~~~ 132 (254)
T COG1121 112 LNKKDKEKVDEALERVGMEDL 132 (254)
T ss_pred ccHHHHHHHHHHHHHcCchhh
Confidence 22333567788888776 443
No 10
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=1.1e-18 Score=92.60 Aligned_cols=75 Identities=20% Similarity=0.192 Sum_probs=55.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc---------------EEEEEecCCccH---HHHHHHHHHHhcC---
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE---------------VGIATVSQDPDI---IKVQGELAKSLGW--- 56 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~---------------~~~~~v~q~~~~---~~v~~~i~~~~~~--- 56 (79)
+++|+|+||+|||||+|+|+|+..++. .+++ ..++|+||+|++ .++.+|++.....
T Consensus 32 ~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s 111 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTS 111 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccch
Confidence 489999999999999999999998872 2222 368999999976 6899998876521
Q ss_pred ------CCChhhHHHHHHHHHHHHh
Q 044571 57 ------ALNEKDEKERADRLRLMFS 75 (79)
Q Consensus 57 ------~~~~~~~~~~~~~l~~~l~ 75 (79)
+...++....+-+.++.++
T Consensus 112 ~~~slfglfsk~dk~~Al~aLervg 136 (258)
T COG3638 112 TWRSLFGLFSKEDKAQALDALERVG 136 (258)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 1223344446666777766
No 11
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.76 E-value=2.7e-18 Score=91.36 Aligned_cols=74 Identities=26% Similarity=0.230 Sum_probs=54.0
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC-------------cEEEEEecCCc-----cHHHHHHHHHHHhcCCCC
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD-------------EVGIATVSQDP-----DIIKVQGELAKSLGWALN 59 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~-------------~~~~~~v~q~~-----~~~~v~~~i~~~~~~~~~ 59 (79)
++||+|+||||||||++++.|+.+|+. .++ .+.+.+||||| +..++.+.+.+.+..+..
T Consensus 35 ~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~ 114 (252)
T COG1124 35 TLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGL 114 (252)
T ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccCCc
Confidence 479999999999999999999999872 222 24588999998 346888888888765322
Q ss_pred hhhHHHHHHHHHHHHh
Q 044571 60 EKDEKERADRLRLMFS 75 (79)
Q Consensus 60 ~~~~~~~~~~l~~~l~ 75 (79)
.+ ..+++.++++.++
T Consensus 115 ~~-~~~~i~~~L~~Vg 129 (252)
T COG1124 115 SK-SQQRIAELLDQVG 129 (252)
T ss_pred cH-HHHHHHHHHHHcC
Confidence 22 2234677777665
No 12
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.76 E-value=5.4e-19 Score=95.28 Aligned_cols=75 Identities=20% Similarity=0.272 Sum_probs=52.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH---HHHHHHHHHHhcCC-----
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI---IKVQGELAKSLGWA----- 57 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~---~~v~~~i~~~~~~~----- 57 (79)
+++|+||||||||||+|+|+|+++|.. .+++ +.++||+|.+.. .++.+-+.....++
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~ 109 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFG 109 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCccccccc
Confidence 478999999999999999999999872 2222 379999999632 57777777654321
Q ss_pred CChhhHHHHHHHHHHHHh
Q 044571 58 LNEKDEKERADRLRLMFS 75 (79)
Q Consensus 58 ~~~~~~~~~~~~l~~~l~ 75 (79)
....+..+.+.+.++.++
T Consensus 110 ~~~~~D~~~v~~aL~~~~ 127 (258)
T COG1120 110 RPSKEDEEIVEEALELLG 127 (258)
T ss_pred CCCHhHHHHHHHHHHHhC
Confidence 112223335666677665
No 13
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.76 E-value=1.2e-18 Score=93.55 Aligned_cols=75 Identities=24% Similarity=0.243 Sum_probs=60.4
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCc---cHHHHHHHHHHHhc-CCCChh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDP---DIIKVQGELAKSLG-WALNEK 61 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~---~~~~v~~~i~~~~~-~~~~~~ 61 (79)
+++++|||||||||++|+|++++.|+. .+++ +.++||-|.. +.+++.+||..-.. .+++.+
T Consensus 29 f~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~ 108 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKE 108 (309)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHH
Confidence 467999999999999999999999983 2222 4689999985 56899999986543 356777
Q ss_pred hHHHHHHHHHHHHh
Q 044571 62 DEKERADRLRLMFS 75 (79)
Q Consensus 62 ~~~~~~~~l~~~l~ 75 (79)
...+++.++++.++
T Consensus 109 ~i~~r~~ELl~lvg 122 (309)
T COG1125 109 RIKKRADELLDLVG 122 (309)
T ss_pred HHHHHHHHHHHHhC
Confidence 77789999999887
No 14
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.75 E-value=5.6e-18 Score=89.06 Aligned_cols=56 Identities=23% Similarity=0.290 Sum_probs=43.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC--------CCCc--------------EEEEEecCCccH--HHHHHHHHHHhcC
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK--------IFDE--------------VGIATVSQDPDI--IKVQGELAKSLGW 56 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~--------~~~~--------------~~~~~v~q~~~~--~~v~~~i~~~~~~ 56 (79)
+.|++|||||||||++|+++++..... .+++ +.+++|||.|+. +++++|+......
T Consensus 35 VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~ 114 (253)
T COG1117 35 VTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRL 114 (253)
T ss_pred eEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCCchHHHHHHHhHHh
Confidence 478999999999999999999865431 1221 358999999865 7999999987754
No 15
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=1.5e-17 Score=86.73 Aligned_cols=75 Identities=20% Similarity=0.263 Sum_probs=58.4
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCcE-------EEEEecCCc---cHHHHHHHHHHHhcC-CCChhhHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDEV-------GIATVSQDP---DIIKVQGELAKSLGW-ALNEKDEKER 66 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~~-------~~~~v~q~~---~~~~v~~~i~~~~~~-~~~~~~~~~~ 66 (79)
+++++||||||||||++.+.|+..|.. ..+++ .-+.|||+. +++++.+|+...+.. +..+....++
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~ 112 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREI 112 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHH
Confidence 367899999999999999999999872 23333 578999997 567999999988864 4455556667
Q ss_pred HHHHHHHHh
Q 044571 67 ADRLRLMFS 75 (79)
Q Consensus 67 ~~~l~~~l~ 75 (79)
+.+++..++
T Consensus 113 a~q~l~~Vg 121 (259)
T COG4525 113 AHQMLALVG 121 (259)
T ss_pred HHHHHHHhC
Confidence 788877776
No 16
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=7.8e-18 Score=94.64 Aligned_cols=75 Identities=21% Similarity=0.279 Sum_probs=54.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc----------EEEEEecCCccH---HHHHHHHHHHhcC-CCChhhH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE----------VGIATVSQDPDI---IKVQGELAKSLGW-ALNEKDE 63 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~----------~~~~~v~q~~~~---~~v~~~i~~~~~~-~~~~~~~ 63 (79)
+++|+||||||||||+++|.|+.+|+. .+++ +.++|+||++.+ +++.+|+...+.. .....+.
T Consensus 34 ~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~ 113 (351)
T PRK11432 34 MVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEER 113 (351)
T ss_pred EEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHH
Confidence 478999999999999999999999872 2222 468999999743 6899999876642 2233334
Q ss_pred HHHHHHHHHHHh
Q 044571 64 KERADRLRLMFS 75 (79)
Q Consensus 64 ~~~~~~l~~~l~ 75 (79)
.+++.++++.++
T Consensus 114 ~~~v~~~l~~~g 125 (351)
T PRK11432 114 KQRVKEALELVD 125 (351)
T ss_pred HHHHHHHHHHcC
Confidence 456667776655
No 17
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=1.1e-17 Score=94.24 Aligned_cols=75 Identities=24% Similarity=0.250 Sum_probs=54.0
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc----------EEEEEecCCccH---HHHHHHHHHHhcCC-CChhhH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE----------VGIATVSQDPDI---IKVQGELAKSLGWA-LNEKDE 63 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~----------~~~~~v~q~~~~---~~v~~~i~~~~~~~-~~~~~~ 63 (79)
+++|+||||||||||+++|+|+.+|+. .+++ +.++||||++.+ +++.+|+...+... ....+.
T Consensus 32 ~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~ 111 (356)
T PRK11650 32 FIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEI 111 (356)
T ss_pred EEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHH
Confidence 478999999999999999999998872 2222 368999999743 68999998765422 222333
Q ss_pred HHHHHHHHHHHh
Q 044571 64 KERADRLRLMFS 75 (79)
Q Consensus 64 ~~~~~~l~~~l~ 75 (79)
.+++.++++.++
T Consensus 112 ~~~~~~~l~~~g 123 (356)
T PRK11650 112 EERVAEAARILE 123 (356)
T ss_pred HHHHHHHHHHcC
Confidence 445666776655
No 18
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.73 E-value=1.5e-17 Score=93.54 Aligned_cols=75 Identities=24% Similarity=0.225 Sum_probs=55.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc----------EEEEEecCCccH---HHHHHHHHHHhcCC-CChhhH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE----------VGIATVSQDPDI---IKVQGELAKSLGWA-LNEKDE 63 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~----------~~~~~v~q~~~~---~~v~~~i~~~~~~~-~~~~~~ 63 (79)
+++|+||||||||||+++|+|+.+|+. .+++ +.++|+||++.+ +++.+|+...+... ....+.
T Consensus 32 ~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~ 111 (353)
T TIGR03265 32 FVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEV 111 (353)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHH
Confidence 478999999999999999999998872 2222 358999999843 68999998766432 223334
Q ss_pred HHHHHHHHHHHh
Q 044571 64 KERADRLRLMFS 75 (79)
Q Consensus 64 ~~~~~~l~~~l~ 75 (79)
.+++.++++.++
T Consensus 112 ~~~~~~~l~~l~ 123 (353)
T TIGR03265 112 AERVAELLDLVG 123 (353)
T ss_pred HHHHHHHHHHcC
Confidence 456777777765
No 19
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.72 E-value=1.7e-17 Score=88.92 Aligned_cols=74 Identities=26% Similarity=0.318 Sum_probs=53.8
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhcccC---CCC-------------cEEEEEecCCccHH----HHHHHHHHHhc-CCCCh
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQEK---IFD-------------EVGIATVSQDPDII----KVQGELAKSLG-WALNE 60 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~~---~~~-------------~~~~~~v~q~~~~~----~v~~~i~~~~~-~~~~~ 60 (79)
++|+|+||||||||+++++|+++|+. .++ .+.+++|||+|+.+ ++.+.+..... .+.+.
T Consensus 33 ~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~ 112 (235)
T COG1122 33 VLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPR 112 (235)
T ss_pred EEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcCCCH
Confidence 68999999999999999999999982 111 23589999999775 55555554432 33444
Q ss_pred hhHHHHHHHHHHHHh
Q 044571 61 KDEKERADRLRLMFS 75 (79)
Q Consensus 61 ~~~~~~~~~l~~~l~ 75 (79)
++..+++.+.++.++
T Consensus 113 ~e~~~rv~~~l~~vg 127 (235)
T COG1122 113 EEIEERVAEALELVG 127 (235)
T ss_pred HHHHHHHHHHHHHcC
Confidence 455667888887776
No 20
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.72 E-value=2.4e-17 Score=93.33 Aligned_cols=75 Identities=21% Similarity=0.192 Sum_probs=53.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc----------EEEEEecCCccH---HHHHHHHHHHhcC-CCChhhH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE----------VGIATVSQDPDI---IKVQGELAKSLGW-ALNEKDE 63 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~----------~~~~~v~q~~~~---~~v~~~i~~~~~~-~~~~~~~ 63 (79)
+++|+||||||||||+++|+|+.+|+. .+++ +.++|+||++.+ +++.+|+...+.. .....+.
T Consensus 42 ~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~ 121 (375)
T PRK09452 42 FLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEI 121 (375)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHH
Confidence 478999999999999999999998862 2222 358999999843 6899999876542 2222333
Q ss_pred HHHHHHHHHHHh
Q 044571 64 KERADRLRLMFS 75 (79)
Q Consensus 64 ~~~~~~l~~~l~ 75 (79)
.+++.++++.++
T Consensus 122 ~~~~~~~l~~~~ 133 (375)
T PRK09452 122 TPRVMEALRMVQ 133 (375)
T ss_pred HHHHHHHHHHcC
Confidence 445666666654
No 21
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=4.6e-17 Score=92.25 Aligned_cols=75 Identities=20% Similarity=0.245 Sum_probs=54.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc----------EEEEEecCCccH---HHHHHHHHHHhcCC-CChhhH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE----------VGIATVSQDPDI---IKVQGELAKSLGWA-LNEKDE 63 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~----------~~~~~v~q~~~~---~~v~~~i~~~~~~~-~~~~~~ 63 (79)
+++|+||||||||||+++|+|+.+|+. .+++ +.++|+||++.+ +++.+|+...+... ....+.
T Consensus 47 ~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~ 126 (377)
T PRK11607 47 IFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEI 126 (377)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHH
Confidence 478999999999999999999998872 2222 358999999744 68999998765422 223333
Q ss_pred HHHHHHHHHHHh
Q 044571 64 KERADRLRLMFS 75 (79)
Q Consensus 64 ~~~~~~l~~~l~ 75 (79)
.+++.++++.++
T Consensus 127 ~~~v~~~l~~l~ 138 (377)
T PRK11607 127 ASRVNEMLGLVH 138 (377)
T ss_pred HHHHHHHHHHcC
Confidence 446667777665
No 22
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.71 E-value=4.3e-17 Score=91.44 Aligned_cols=75 Identities=25% Similarity=0.298 Sum_probs=54.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC---------------cEEEEEecCCccH---HHHHHHHHHHhcC-CC
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD---------------EVGIATVSQDPDI---IKVQGELAKSLGW-AL 58 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~---------------~~~~~~v~q~~~~---~~v~~~i~~~~~~-~~ 58 (79)
+++|+|+||||||||+++|+|+++|+. .++ .+.++|+||++.+ .++.+|+...+.. ..
T Consensus 33 i~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~ 112 (343)
T TIGR02314 33 IYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNT 112 (343)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCC
Confidence 478999999999999999999999872 111 2358999999754 5788998765532 23
Q ss_pred ChhhHHHHHHHHHHHHh
Q 044571 59 NEKDEKERADRLRLMFS 75 (79)
Q Consensus 59 ~~~~~~~~~~~l~~~l~ 75 (79)
...+..+++.++++.++
T Consensus 113 ~~~~~~~~v~e~l~~vg 129 (343)
T TIGR02314 113 PKDEIKRKVTELLALVG 129 (343)
T ss_pred CHHHHHHHHHHHHHHcC
Confidence 33344456677777765
No 23
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.71 E-value=3.4e-17 Score=92.39 Aligned_cols=75 Identities=24% Similarity=0.277 Sum_probs=54.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC--C---CCc----------EEEEEecCCccH---HHHHHHHHHHhcCC-CChh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK--I---FDE----------VGIATVSQDPDI---IKVQGELAKSLGWA-LNEK 61 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~--~---~~~----------~~~~~v~q~~~~---~~v~~~i~~~~~~~-~~~~ 61 (79)
+++|+||||||||||+++|+|+.+|+. . +++ +.++++||++.+ +++.+|+...+... ....
T Consensus 33 ~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~ 112 (362)
T TIGR03258 33 LLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKA 112 (362)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHH
Confidence 478999999999999999999998864 1 221 358999999844 68999998766422 2333
Q ss_pred hHHHHHHHHHHHHh
Q 044571 62 DEKERADRLRLMFS 75 (79)
Q Consensus 62 ~~~~~~~~l~~~l~ 75 (79)
+..+++.++++.++
T Consensus 113 ~~~~~v~~~l~~~g 126 (362)
T TIGR03258 113 DIAERVADALKLVG 126 (362)
T ss_pred HHHHHHHHHHHhcC
Confidence 34446677777765
No 24
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.70 E-value=6.8e-17 Score=88.86 Aligned_cols=75 Identities=29% Similarity=0.387 Sum_probs=56.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhc-cc-------CCC----------------CcEEEEEecCCc-----cHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLR-QE-------KIF----------------DEVGIATVSQDP-----DIIKVQGELA 51 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~-~~-------~~~----------------~~~~~~~v~q~~-----~~~~v~~~i~ 51 (79)
++||+|+|||||||+.++|+|+++ +. ..| .++.++++|||| +..++.+++.
T Consensus 33 ~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~ 112 (316)
T COG0444 33 ILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIA 112 (316)
T ss_pred EEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHH
Confidence 479999999999999999999997 42 012 245799999997 4578999999
Q ss_pred HHhcCCC---ChhhHHHHHHHHHHHHh
Q 044571 52 KSLGWAL---NEKDEKERADRLRLMFS 75 (79)
Q Consensus 52 ~~~~~~~---~~~~~~~~~~~l~~~l~ 75 (79)
+.+..+. ..++..+++.++++.++
T Consensus 113 E~l~~h~~~~~~~ea~~~a~~~L~~Vg 139 (316)
T COG0444 113 EVLRLHGKGLSKKEAKERAIELLELVG 139 (316)
T ss_pred HHHHHhhcchhhHHHHHHHHHHHHHcC
Confidence 9876432 23345567888888776
No 25
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.70 E-value=7.4e-18 Score=92.81 Aligned_cols=78 Identities=23% Similarity=0.269 Sum_probs=60.5
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC----------------cEEEEEecCCc---cHHHHHHHHHHHhcC-C
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD----------------EVGIATVSQDP---DIIKVQGELAKSLGW-A 57 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~----------------~~~~~~v~q~~---~~~~v~~~i~~~~~~-~ 57 (79)
+..|.|-||||||||+|+++++++|+. .++ .+.+++|||+| ++.++.+|+...+.. +
T Consensus 56 IfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~G 135 (386)
T COG4175 56 IFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQG 135 (386)
T ss_pred EEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecC
Confidence 357899999999999999999999982 222 24689999998 457888998877754 3
Q ss_pred CChhhHHHHHHHHHHHHh-hhc
Q 044571 58 LNEKDEKERADRLRLMFS-ERY 78 (79)
Q Consensus 58 ~~~~~~~~~~~~l~~~l~-~~~ 78 (79)
.+..+.++++.++++.++ +.|
T Consensus 136 v~~~er~~~a~~~l~~VgL~~~ 157 (386)
T COG4175 136 VPKAEREERALEALELVGLEGY 157 (386)
T ss_pred CCHHHHHHHHHHHHHHcCchhh
Confidence 455566678888888887 544
No 26
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.70 E-value=4.9e-17 Score=91.53 Aligned_cols=75 Identities=27% Similarity=0.238 Sum_probs=53.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc----------EEEEEecCCccH---HHHHHHHHHHhcC-----CCC
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE----------VGIATVSQDPDI---IKVQGELAKSLGW-----ALN 59 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~----------~~~~~v~q~~~~---~~v~~~i~~~~~~-----~~~ 59 (79)
+++|+||||||||||+++|+|+.+|+. .+++ +.++|+||++.+ +++.+|+...+.. ...
T Consensus 30 ~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~ 109 (353)
T PRK10851 30 MVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPN 109 (353)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCC
Confidence 478999999999999999999998872 2222 358999999744 6899998776532 112
Q ss_pred hhhHHHHHHHHHHHHh
Q 044571 60 EKDEKERADRLRLMFS 75 (79)
Q Consensus 60 ~~~~~~~~~~l~~~l~ 75 (79)
..+..+++.++++.++
T Consensus 110 ~~~~~~~~~~~l~~~~ 125 (353)
T PRK10851 110 AAAIKAKVTQLLEMVQ 125 (353)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 2233446667777665
No 27
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.70 E-value=3.5e-17 Score=84.52 Aligned_cols=75 Identities=16% Similarity=0.285 Sum_probs=54.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc----------EEEEEecCCccH---HHHHHHHHHHhcCCCCh-hhH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE----------VGIATVSQDPDI---IKVQGELAKSLGWALNE-KDE 63 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~----------~~~~~v~q~~~~---~~v~~~i~~~~~~~~~~-~~~ 63 (79)
+++|+||||+|||||+++|.|.+.|.. .+++ +=++++||+.++ .++.+|+...+.+...- ...
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~ 106 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQ 106 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcccccCHHH
Confidence 479999999999999999999998872 1222 237899999866 68889988777655332 233
Q ss_pred HHHHHHHHHHHh
Q 044571 64 KERADRLRLMFS 75 (79)
Q Consensus 64 ~~~~~~l~~~l~ 75 (79)
.++++.+...++
T Consensus 107 r~~v~~aa~~vG 118 (231)
T COG3840 107 REKVEAAAAQVG 118 (231)
T ss_pred HHHHHHHHHHhC
Confidence 345666666554
No 28
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.70 E-value=3.2e-17 Score=87.34 Aligned_cols=75 Identities=23% Similarity=0.182 Sum_probs=54.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc---------------EEEEEecCCc---cHHHHHHHHHHHhcCC--
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE---------------VGIATVSQDP---DIIKVQGELAKSLGWA-- 57 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~---------------~~~~~v~q~~---~~~~v~~~i~~~~~~~-- 57 (79)
+.+|+|+||+|||||+|+|.|+++|+. .+++ +.|+++||.- +.+++++|+...+..+
T Consensus 36 i~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~ 115 (263)
T COG1127 36 ILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTK 115 (263)
T ss_pred EEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhhcc
Confidence 468999999999999999999999982 1221 3699999996 4478999998877543
Q ss_pred CChhhHHHHHHHHHHHHh
Q 044571 58 LNEKDEKERADRLRLMFS 75 (79)
Q Consensus 58 ~~~~~~~~~~~~l~~~l~ 75 (79)
.++....+.+..-++.++
T Consensus 116 lp~~~i~~lv~~KL~~VG 133 (263)
T COG1127 116 LPESLIRELVLMKLELVG 133 (263)
T ss_pred CCHHHHHHHHHHHHHhcC
Confidence 334444455555555544
No 29
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.69 E-value=7.5e-17 Score=88.93 Aligned_cols=75 Identities=25% Similarity=0.312 Sum_probs=54.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-----------EEEEEecCCcc---HHHHHHHHHHHhcCCCCh-hh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-----------VGIATVSQDPD---IIKVQGELAKSLGWALNE-KD 62 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-----------~~~~~v~q~~~---~~~v~~~i~~~~~~~~~~-~~ 62 (79)
++|++||||||||||+|+|+|+.+|+. .+.+ +.++|++|++. .+++.+++.......... ..
T Consensus 33 i~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~ 112 (293)
T COG1131 33 IFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEE 112 (293)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhH
Confidence 479999999999999999999999872 1111 35899999974 368888887755433222 23
Q ss_pred HHHHHHHHHHHHh
Q 044571 63 EKERADRLRLMFS 75 (79)
Q Consensus 63 ~~~~~~~l~~~l~ 75 (79)
..++++++++.++
T Consensus 113 ~~~~~~~~l~~~~ 125 (293)
T COG1131 113 AEERIEELLELFG 125 (293)
T ss_pred HHHHHHHHHHHcC
Confidence 3456777777776
No 30
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.3e-16 Score=90.25 Aligned_cols=75 Identities=17% Similarity=0.264 Sum_probs=52.5
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc----------EEEEEecCCccH---HHHHHHHHHHhcC-CCChhhH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE----------VGIATVSQDPDI---IKVQGELAKSLGW-ALNEKDE 63 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~----------~~~~~v~q~~~~---~~v~~~i~~~~~~-~~~~~~~ 63 (79)
+++|+||||||||||+++|+|+++|+. .+++ +.++|+||++.+ +++.+|+...+.. .....+.
T Consensus 31 ~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~ 110 (369)
T PRK11000 31 FVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEI 110 (369)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHH
Confidence 478999999999999999999998862 1221 358999999743 5888998765432 2222233
Q ss_pred HHHHHHHHHHHh
Q 044571 64 KERADRLRLMFS 75 (79)
Q Consensus 64 ~~~~~~l~~~l~ 75 (79)
.+++.++++.++
T Consensus 111 ~~~~~~~l~~lg 122 (369)
T PRK11000 111 NQRVNQVAEVLQ 122 (369)
T ss_pred HHHHHHHHHHcC
Confidence 345666666665
No 31
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.69 E-value=8.3e-18 Score=89.51 Aligned_cols=75 Identities=29% Similarity=0.345 Sum_probs=54.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-------------EEEEEecCCc---cHHHHHHHHHHHhcCC----
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-------------VGIATVSQDP---DIIKVQGELAKSLGWA---- 57 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-------------~~~~~v~q~~---~~~~v~~~i~~~~~~~---- 57 (79)
+++|+||||+||||++++|+|.++|+. .|++ ..++.-||.. +.+++.+|++-.....
T Consensus 32 i~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~ 111 (250)
T COG0411 32 IVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLS 111 (250)
T ss_pred EEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhh
Confidence 478999999999999999999999982 2332 2467788876 3478999988764311
Q ss_pred ---------CChhhHHHHHHHHHHHHh
Q 044571 58 ---------LNEKDEKERADRLRLMFS 75 (79)
Q Consensus 58 ---------~~~~~~~~~~~~l~~~l~ 75 (79)
....+..+++.+++++++
T Consensus 112 ~~l~~~~~~~~e~~~~e~A~~~Le~vg 138 (250)
T COG0411 112 GLLGRPRARKEEREARERARELLEFVG 138 (250)
T ss_pred hhhccccchhhHHHHHHHHHHHHHHcC
Confidence 122344557888888876
No 32
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.68 E-value=1.3e-16 Score=89.98 Aligned_cols=75 Identities=19% Similarity=0.234 Sum_probs=54.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC----------------cEEEEEecCCccH---HHHHHHHHHHhcC-C
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD----------------EVGIATVSQDPDI---IKVQGELAKSLGW-A 57 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~----------------~~~~~~v~q~~~~---~~v~~~i~~~~~~-~ 57 (79)
+++|+|+||||||||+++|+|+++|+. .++ .+.++|+||++.+ .++.+|+...... +
T Consensus 21 i~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~ 100 (363)
T TIGR01186 21 IFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLG 100 (363)
T ss_pred EEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999999999872 111 2468999999744 5888998765432 2
Q ss_pred CChhhHHHHHHHHHHHHh
Q 044571 58 LNEKDEKERADRLRLMFS 75 (79)
Q Consensus 58 ~~~~~~~~~~~~l~~~l~ 75 (79)
....+..+++.++++.++
T Consensus 101 ~~~~~~~~~~~~~l~~vg 118 (363)
T TIGR01186 101 WPEQERKEKALELLKLVG 118 (363)
T ss_pred CCHHHHHHHHHHHHHhcC
Confidence 333334456677777665
No 33
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.67 E-value=1.1e-16 Score=82.16 Aligned_cols=74 Identities=18% Similarity=0.102 Sum_probs=56.0
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhcccC-------------------CCCcEEEEEecCCc---cHHHHHHHHHHHhcCCC-
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQEK-------------------IFDEVGIATVSQDP---DIIKVQGELAKSLGWAL- 58 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~~-------------------~~~~~~~~~v~q~~---~~~~v~~~i~~~~~~~~- 58 (79)
++||||||||||||+-.+.|+..|+. .+....+++|||.| +.++-.+|+...+....
T Consensus 39 vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge 118 (228)
T COG4181 39 VAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE 118 (228)
T ss_pred EEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCC
Confidence 78999999999999999999998872 23345799999998 44688888877664433
Q ss_pred ChhhHHHHHHHHHHHHh
Q 044571 59 NEKDEKERADRLRLMFS 75 (79)
Q Consensus 59 ~~~~~~~~~~~l~~~l~ 75 (79)
...+....+.++++.++
T Consensus 119 ~~~~~~~~A~~lL~~vG 135 (228)
T COG4181 119 SSADSRAGAKALLEAVG 135 (228)
T ss_pred ccccHHHHHHHHHHHhC
Confidence 23344456777888776
No 34
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.67 E-value=2.4e-16 Score=83.51 Aligned_cols=53 Identities=23% Similarity=0.203 Sum_probs=41.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-------EEEEEecCCccH-----HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-------VGIATVSQDPDI-----IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-------~~~~~v~q~~~~-----~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+.+|+. .+++ ..++|++|++.. .++.+++...
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~ 94 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMG 94 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhc
Confidence 478999999999999999999998862 2332 358999998743 4778887653
No 35
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=3.7e-16 Score=83.12 Aligned_cols=75 Identities=23% Similarity=0.242 Sum_probs=49.5
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-----------EEEEEecCCccH---HHHHHHHHHHhcC-CCChhh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-----------VGIATVSQDPDI---IKVQGELAKSLGW-ALNEKD 62 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-----------~~~~~v~q~~~~---~~v~~~i~~~~~~-~~~~~~ 62 (79)
+++|+|+||||||||+++|+|+.+|+. .+++ ..++|++|++.. .++.+++...... .....+
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~ 107 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAE 107 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHH
Confidence 478999999999999999999988762 1211 257899999743 4677777654321 122222
Q ss_pred HHHHHHHHHHHHh
Q 044571 63 EKERADRLRLMFS 75 (79)
Q Consensus 63 ~~~~~~~l~~~l~ 75 (79)
..+.+.++++.++
T Consensus 108 ~~~~~~~~l~~~~ 120 (220)
T cd03265 108 RRERIDELLDFVG 120 (220)
T ss_pred HHHHHHHHHHHcC
Confidence 3335566666654
No 36
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=5.2e-16 Score=83.24 Aligned_cols=75 Identities=21% Similarity=0.232 Sum_probs=49.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC---------------cEEEEEecCCccH---HHHHHHHHHHhcC--C
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD---------------EVGIATVSQDPDI---IKVQGELAKSLGW--A 57 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~---------------~~~~~~v~q~~~~---~~v~~~i~~~~~~--~ 57 (79)
+++|+|+||||||||+++|+|+.+|+. .++ ...++|++|++.. .++.+++...... .
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~ 107 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTR 107 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccC
Confidence 478999999999999999999998862 111 1247899998743 5788887654321 1
Q ss_pred CChhhHHHHHHHHHHHHh
Q 044571 58 LNEKDEKERADRLRLMFS 75 (79)
Q Consensus 58 ~~~~~~~~~~~~l~~~l~ 75 (79)
.......+.+.++++.++
T Consensus 108 ~~~~~~~~~~~~~l~~~~ 125 (235)
T cd03261 108 LSEEEIREIVLEKLEAVG 125 (235)
T ss_pred CCHHHHHHHHHHHHHHcC
Confidence 222222334555666554
No 37
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.66 E-value=2.9e-16 Score=89.07 Aligned_cols=75 Identities=20% Similarity=0.279 Sum_probs=53.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc--------------------EEEEEecCCccH---HHHHHHHHHHh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE--------------------VGIATVSQDPDI---IKVQGELAKSL 54 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~--------------------~~~~~v~q~~~~---~~v~~~i~~~~ 54 (79)
+++|+|+||||||||+++|+|+++|+. .+++ ..++|+||++.+ .++.+|+....
T Consensus 52 i~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~ 131 (382)
T TIGR03415 52 ICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGL 131 (382)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHH
Confidence 478999999999999999999998872 1221 258999999844 57899987654
Q ss_pred cC-CCChhhHHHHHHHHHHHHh
Q 044571 55 GW-ALNEKDEKERADRLRLMFS 75 (79)
Q Consensus 55 ~~-~~~~~~~~~~~~~l~~~l~ 75 (79)
.. ........+++.++++.++
T Consensus 132 ~~~g~~~~~~~~~a~e~le~vg 153 (382)
T TIGR03415 132 EMQGMPEAERRKRVDEQLELVG 153 (382)
T ss_pred HhcCCCHHHHHHHHHHHHHHcC
Confidence 32 2222333446667777665
No 38
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=4.7e-16 Score=83.35 Aligned_cols=75 Identities=20% Similarity=0.203 Sum_probs=49.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc----------------EEEEEecCCccH---HHHHHHHHHHhcC-C
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE----------------VGIATVSQDPDI---IKVQGELAKSLGW-A 57 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~----------------~~~~~v~q~~~~---~~v~~~i~~~~~~-~ 57 (79)
+++|+|+||||||||+++|+|+.+|+. .+++ ..++|++|++.. .++.+++...... .
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 116 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGK 116 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcC
Confidence 478999999999999999999988762 1111 358999999743 4788887654321 1
Q ss_pred CChhhHHHHHHHHHHHHh
Q 044571 58 LNEKDEKERADRLRLMFS 75 (79)
Q Consensus 58 ~~~~~~~~~~~~l~~~l~ 75 (79)
.......+++.++++.++
T Consensus 117 ~~~~~~~~~~~~~l~~~g 134 (233)
T PRK11629 117 KKPAEINSRALEMLAAVG 134 (233)
T ss_pred CCHHHHHHHHHHHHHHcC
Confidence 122223345566666654
No 39
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.66 E-value=5e-16 Score=82.42 Aligned_cols=75 Identities=24% Similarity=0.228 Sum_probs=49.5
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc---------------EEEEEecCCccH---HHHHHHHHHHhcC-CC
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE---------------VGIATVSQDPDI---IKVQGELAKSLGW-AL 58 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~---------------~~~~~v~q~~~~---~~v~~~i~~~~~~-~~ 58 (79)
+++|+|+||||||||+++|+|+.+|+. .+++ +.++|++|++.. .++.+++...... ..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 110 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGV 110 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcCC
Confidence 478999999999999999999998762 1221 247899999743 4778887654321 11
Q ss_pred ChhhHHHHHHHHHHHHh
Q 044571 59 NEKDEKERADRLRLMFS 75 (79)
Q Consensus 59 ~~~~~~~~~~~l~~~l~ 75 (79)
......+++.++++.++
T Consensus 111 ~~~~~~~~~~~~l~~~~ 127 (216)
T TIGR00960 111 PPRDANERVSAALEKVG 127 (216)
T ss_pred CHHHHHHHHHHHHHHcC
Confidence 22223335555666554
No 40
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=6e-16 Score=81.97 Aligned_cols=75 Identities=25% Similarity=0.333 Sum_probs=48.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc----------EEEEEecCCccH---HHHHHHHHHHhcC-CCChhhH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE----------VGIATVSQDPDI---IKVQGELAKSLGW-ALNEKDE 63 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~----------~~~~~v~q~~~~---~~v~~~i~~~~~~-~~~~~~~ 63 (79)
+++|+|+||||||||+++|.|+.+|+. .+++ ..++|++|++.. .++.+++...... .......
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~ 107 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEI 107 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHH
Confidence 478999999999999999999998762 1221 357899999743 4777777643321 1122222
Q ss_pred HHHHHHHHHHHh
Q 044571 64 KERADRLRLMFS 75 (79)
Q Consensus 64 ~~~~~~l~~~l~ 75 (79)
.+.+.++++.++
T Consensus 108 ~~~~~~~l~~~~ 119 (213)
T cd03259 108 RARVRELLELVG 119 (213)
T ss_pred HHHHHHHHHHcC
Confidence 334555555544
No 41
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.66 E-value=2.8e-16 Score=90.23 Aligned_cols=75 Identities=20% Similarity=0.306 Sum_probs=54.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCcE-------------EEEEecCCccH---HHHHHHHHHHhcCC----
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDEV-------------GIATVSQDPDI---IKVQGELAKSLGWA---- 57 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~~-------------~~~~v~q~~~~---~~v~~~i~~~~~~~---- 57 (79)
+.|++|+||+|||||+++|+|.++|+. .++++ .+++|+|+|.+ +++.+||.......
T Consensus 32 IHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~ 111 (501)
T COG3845 32 IHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGL 111 (501)
T ss_pred EEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccc
Confidence 478999999999999999999999983 23332 58999999954 79999998765321
Q ss_pred CChhhHHHHHHHHHHHHh
Q 044571 58 LNEKDEKERADRLRLMFS 75 (79)
Q Consensus 58 ~~~~~~~~~~~~l~~~l~ 75 (79)
.......+++.++.+..+
T Consensus 112 ~~~~~~~~~i~~l~~~yG 129 (501)
T COG3845 112 IDRRQARARIKELSERYG 129 (501)
T ss_pred cCHHHHHHHHHHHHHHhC
Confidence 222334445666666543
No 42
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=4.8e-16 Score=87.30 Aligned_cols=75 Identities=23% Similarity=0.256 Sum_probs=51.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC---------------cEEEEEecCCccH---HHHHHHHHHHhcC-CC
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD---------------EVGIATVSQDPDI---IKVQGELAKSLGW-AL 58 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~---------------~~~~~~v~q~~~~---~~v~~~i~~~~~~-~~ 58 (79)
+++|+|+||||||||+++|+|+.+|+. .++ .+.++|+||++.+ .++.+++...... ..
T Consensus 33 i~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~ 112 (343)
T PRK11153 33 IFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGT 112 (343)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCC
Confidence 478999999999999999999998862 111 1358999999753 5788888665421 22
Q ss_pred ChhhHHHHHHHHHHHHh
Q 044571 59 NEKDEKERADRLRLMFS 75 (79)
Q Consensus 59 ~~~~~~~~~~~l~~~l~ 75 (79)
...+..+++.++++.++
T Consensus 113 ~~~~~~~~~~~~l~~~g 129 (343)
T PRK11153 113 PKAEIKARVTELLELVG 129 (343)
T ss_pred CHHHHHHHHHHHHHHcC
Confidence 22233345566666654
No 43
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.65 E-value=6.5e-16 Score=85.54 Aligned_cols=75 Identities=24% Similarity=0.298 Sum_probs=50.5
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-----------EEEEEecCCccH---HHHHHHHHHHhcC-CCChhh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-----------VGIATVSQDPDI---IKVQGELAKSLGW-ALNEKD 62 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-----------~~~~~v~q~~~~---~~v~~~i~~~~~~-~~~~~~ 62 (79)
+++|+||||||||||+++|+|+++|+. .+++ ..++|++|++.. +++.+++...... ......
T Consensus 21 ~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 100 (302)
T TIGR01188 21 VFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDE 100 (302)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHH
Confidence 478999999999999999999998872 1222 248999999743 5788887653321 222222
Q ss_pred HHHHHHHHHHHHh
Q 044571 63 EKERADRLRLMFS 75 (79)
Q Consensus 63 ~~~~~~~l~~~l~ 75 (79)
..+++.++++.++
T Consensus 101 ~~~~~~~~l~~~~ 113 (302)
T TIGR01188 101 AEERAEELLELFE 113 (302)
T ss_pred HHHHHHHHHHHcC
Confidence 3345566666654
No 44
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.65 E-value=7.2e-16 Score=85.52 Aligned_cols=75 Identities=17% Similarity=0.136 Sum_probs=50.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC-----------cEEEEEecCCccH---HHHHHHHHHHhc-CCCChhh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD-----------EVGIATVSQDPDI---IKVQGELAKSLG-WALNEKD 62 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~-----------~~~~~~v~q~~~~---~~v~~~i~~~~~-~~~~~~~ 62 (79)
++||+||||||||||+++|+|+.+|+. .++ ...++|+||++.. .++.+++..... ......+
T Consensus 35 i~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 114 (306)
T PRK13537 35 CFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAA 114 (306)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHH
Confidence 479999999999999999999998872 121 1358999999743 578888764322 1222223
Q ss_pred HHHHHHHHHHHHh
Q 044571 63 EKERADRLRLMFS 75 (79)
Q Consensus 63 ~~~~~~~l~~~l~ 75 (79)
..+++.++++.++
T Consensus 115 ~~~~~~~~l~~~~ 127 (306)
T PRK13537 115 ARALVPPLLEFAK 127 (306)
T ss_pred HHHHHHHHHHHcC
Confidence 3345556666554
No 45
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=6.6e-16 Score=82.17 Aligned_cols=75 Identities=24% Similarity=0.317 Sum_probs=48.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-------EEEEEecCCccH---HHHHHHHHHHhcC-CCChhhHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-------VGIATVSQDPDI---IKVQGELAKSLGW-ALNEKDEKER 66 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-------~~~~~v~q~~~~---~~v~~~i~~~~~~-~~~~~~~~~~ 66 (79)
+++|+|+||||||||+++|+|+.+|+. .+++ ..++|++|++.. .++.+++...... ........+.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~ 111 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARER 111 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHH
Confidence 478999999999999999999988762 2222 357899998743 4677777644321 1122222334
Q ss_pred HHHHHHHHh
Q 044571 67 ADRLRLMFS 75 (79)
Q Consensus 67 ~~~l~~~l~ 75 (79)
+.++++.++
T Consensus 112 ~~~~l~~~~ 120 (220)
T cd03293 112 AEELLELVG 120 (220)
T ss_pred HHHHHHHcC
Confidence 555555544
No 46
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.65 E-value=3.5e-16 Score=80.97 Aligned_cols=75 Identities=15% Similarity=0.194 Sum_probs=56.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC-----------c--------------EEEEEecCCccH---HHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD-----------E--------------VGIATVSQDPDI---IKVQGE 49 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~-----------~--------------~~~~~v~q~~~~---~~v~~~ 49 (79)
++.|+|.|||||||+++||+=+..|.. ... + ...++|||++++ +++.+|
T Consensus 34 VisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeN 113 (256)
T COG4598 34 VISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLEN 113 (256)
T ss_pred EEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHH
Confidence 478999999999999999999988861 011 0 147899999976 899999
Q ss_pred HHHHh-c-CCCChhhHHHHHHHHHHHHh
Q 044571 50 LAKSL-G-WALNEKDEKERADRLRLMFS 75 (79)
Q Consensus 50 i~~~~-~-~~~~~~~~~~~~~~l~~~l~ 75 (79)
+++.- . .+.+..+..+++..++..++
T Consensus 114 ViEaPvhVLg~~k~ea~e~Ae~~L~kVG 141 (256)
T COG4598 114 VIEAPVHVLGVSKAEAIERAEKYLAKVG 141 (256)
T ss_pred HHhcchHhhcCCHHHHHHHHHHHHHHhC
Confidence 98853 2 34455566678888888776
No 47
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.64 E-value=7.3e-16 Score=81.87 Aligned_cols=75 Identities=27% Similarity=0.297 Sum_probs=48.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC----------------cEEEEEecCCccH---HHHHHHHHHHhcCC-
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD----------------EVGIATVSQDPDI---IKVQGELAKSLGWA- 57 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~----------------~~~~~~v~q~~~~---~~v~~~i~~~~~~~- 57 (79)
+++|+|+||||||||+++|+|+++|+. .++ ...++|++|++.. .++.+++.......
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 111 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG 111 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC
Confidence 478999999999999999999998862 111 1358999998643 47777776543221
Q ss_pred CChhhHHHHHHHHHHHHh
Q 044571 58 LNEKDEKERADRLRLMFS 75 (79)
Q Consensus 58 ~~~~~~~~~~~~l~~~l~ 75 (79)
.......+.+.++++.++
T Consensus 112 ~~~~~~~~~~~~~l~~~~ 129 (218)
T cd03255 112 VPKKERRERAEELLERVG 129 (218)
T ss_pred CCHHHHHHHHHHHHHHcC
Confidence 112222334555555554
No 48
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.64 E-value=3.3e-16 Score=82.96 Aligned_cols=55 Identities=31% Similarity=0.384 Sum_probs=44.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-------------EEEEEecCCc---cHHHHHHHHHHHhc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-------------VGIATVSQDP---DIIKVQGELAKSLG 55 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-------------~~~~~v~q~~---~~~~v~~~i~~~~~ 55 (79)
+++++|+||+||||++++|+|+.++.. .|++ ..++||||.- +.+++.+|+.....
T Consensus 31 iv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~ 104 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAY 104 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhh
Confidence 478999999999999999999999862 2333 2589999985 44799999987653
No 49
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.64 E-value=1.3e-15 Score=81.02 Aligned_cols=75 Identities=21% Similarity=0.268 Sum_probs=48.5
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-----------EEEEEecCCccH---HHHHHHHHHHhcC-CCChhh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-----------VGIATVSQDPDI---IKVQGELAKSLGW-ALNEKD 62 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-----------~~~~~v~q~~~~---~~v~~~i~~~~~~-~~~~~~ 62 (79)
+++|+|+||||||||+++|+|+.+|+. .+++ ..++|++|++.. .++.+++...... ......
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~ 109 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSE 109 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHH
Confidence 478999999999999999999998862 1221 247899998743 4677777653321 122222
Q ss_pred HHHHHHHHHHHHh
Q 044571 63 EKERADRLRLMFS 75 (79)
Q Consensus 63 ~~~~~~~l~~~l~ 75 (79)
..+.+.++++.++
T Consensus 110 ~~~~~~~~l~~~~ 122 (220)
T cd03263 110 IKEEVELLLRVLG 122 (220)
T ss_pred HHHHHHHHHHHcC
Confidence 2334555555543
No 50
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=1.1e-15 Score=82.26 Aligned_cols=53 Identities=26% Similarity=0.335 Sum_probs=40.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc----------EEEEEecCCccH---HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE----------VGIATVSQDPDI---IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~----------~~~~~v~q~~~~---~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+.+|+. .+++ ..++|++|++.. .++.+++...
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 98 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFG 98 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhh
Confidence 478999999999999999999998762 1221 248899999743 4778887654
No 51
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=8.2e-16 Score=81.36 Aligned_cols=75 Identities=24% Similarity=0.266 Sum_probs=48.5
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC-----------cEEEEEecCCccH---HHHHHHHHHHhcC-CCChhh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD-----------EVGIATVSQDPDI---IKVQGELAKSLGW-ALNEKD 62 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~-----------~~~~~~v~q~~~~---~~v~~~i~~~~~~-~~~~~~ 62 (79)
+++|+|+||||||||+++|+|+++|+. .++ ...++|++|++.. .++.+++...... .....+
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~ 106 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKE 106 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHH
Confidence 479999999999999999999998762 111 1357899999743 4777777643321 112222
Q ss_pred HHHHHHHHHHHHh
Q 044571 63 EKERADRLRLMFS 75 (79)
Q Consensus 63 ~~~~~~~l~~~l~ 75 (79)
..+.+.++++.++
T Consensus 107 ~~~~~~~~l~~~~ 119 (211)
T cd03264 107 VKARVDEVLELVN 119 (211)
T ss_pred HHHHHHHHHHHCC
Confidence 2334455555543
No 52
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=9.8e-16 Score=87.40 Aligned_cols=75 Identities=20% Similarity=0.279 Sum_probs=51.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc----------------EEEEEecCCccH---HHHHHHHHHHhcC-C
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE----------------VGIATVSQDPDI---IKVQGELAKSLGW-A 57 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~----------------~~~~~v~q~~~~---~~v~~~i~~~~~~-~ 57 (79)
+++|+|+||||||||+++|+|+++|+. .+++ ..++|+||++.+ .++.+++...... .
T Consensus 56 i~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~ 135 (400)
T PRK10070 56 IFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAG 135 (400)
T ss_pred EEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcC
Confidence 478999999999999999999998872 1211 258999999743 5788888765422 2
Q ss_pred CChhhHHHHHHHHHHHHh
Q 044571 58 LNEKDEKERADRLRLMFS 75 (79)
Q Consensus 58 ~~~~~~~~~~~~l~~~l~ 75 (79)
....+..+++.++++.++
T Consensus 136 ~~~~~~~~~~~e~L~~~g 153 (400)
T PRK10070 136 INAEERREKALDALRQVG 153 (400)
T ss_pred CCHHHHHHHHHHHHHHcC
Confidence 222233345666666664
No 53
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.64 E-value=5.2e-16 Score=90.41 Aligned_cols=75 Identities=32% Similarity=0.362 Sum_probs=55.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc--------------EEEEEecCCc-----cHHHHHHHHHHHhcCCC
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE--------------VGIATVSQDP-----DIIKVQGELAKSLGWAL 58 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~--------------~~~~~v~q~~-----~~~~v~~~i~~~~~~~~ 58 (79)
++||||+||||||||+|+|.|+.+|+. .|++ +.+-++|||| +.+++.+.+.+.+....
T Consensus 319 ~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~ 398 (539)
T COG1123 319 TLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHG 398 (539)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhc
Confidence 479999999999999999999999972 1221 3578899998 33688999988886443
Q ss_pred C--hhhHHHHHHHHHHHHh
Q 044571 59 N--EKDEKERADRLRLMFS 75 (79)
Q Consensus 59 ~--~~~~~~~~~~l~~~l~ 75 (79)
. ..+..+++.++++.++
T Consensus 399 ~~~~~~~~~rv~~ll~~Vg 417 (539)
T COG1123 399 GGSGAERRARVAELLELVG 417 (539)
T ss_pred ccchHHHHHHHHHHHHHcC
Confidence 2 2334456777887765
No 54
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.64 E-value=7.4e-16 Score=86.21 Aligned_cols=75 Identities=23% Similarity=0.290 Sum_probs=51.5
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc---------------EEEEEecCCcc-----HHHHHHHHHHHhcC-
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE---------------VGIATVSQDPD-----IIKVQGELAKSLGW- 56 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~---------------~~~~~v~q~~~-----~~~v~~~i~~~~~~- 56 (79)
+++|+|+||||||||+++|+|+++++. .+++ ..++||||++. ..++.+++.+.+..
T Consensus 49 ~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~ 128 (331)
T PRK15079 49 TLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTY 128 (331)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999998862 1211 35899999962 35788888765432
Q ss_pred --CCChhhHHHHHHHHHHHHh
Q 044571 57 --ALNEKDEKERADRLRLMFS 75 (79)
Q Consensus 57 --~~~~~~~~~~~~~l~~~l~ 75 (79)
.....+..+.+.++++.++
T Consensus 129 ~~~~~~~~~~~~~~~~l~~vg 149 (331)
T PRK15079 129 HPKLSRQEVKDRVKAMMLKVG 149 (331)
T ss_pred ccCCCHHHHHHHHHHHHHHcC
Confidence 1233333445566666554
No 55
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.64 E-value=1.4e-15 Score=80.80 Aligned_cols=75 Identities=21% Similarity=0.306 Sum_probs=49.0
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-----------EEEEEecCCccH---HHHHHHHHHHhcC-CCChhh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-----------VGIATVSQDPDI---IKVQGELAKSLGW-ALNEKD 62 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-----------~~~~~v~q~~~~---~~v~~~i~~~~~~-~~~~~~ 62 (79)
+++|+|+||||||||+++|+|+.+|+. .+++ ..++|++|++.. .++.+++...... .....+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 112 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDE 112 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHH
Confidence 478999999999999999999998862 1221 357899999743 4777777543221 122222
Q ss_pred HHHHHHHHHHHHh
Q 044571 63 EKERADRLRLMFS 75 (79)
Q Consensus 63 ~~~~~~~l~~~l~ 75 (79)
..+.+.++++.++
T Consensus 113 ~~~~~~~~l~~~~ 125 (218)
T cd03266 113 LTARLEELADRLG 125 (218)
T ss_pred HHHHHHHHHHHcC
Confidence 3335555665554
No 56
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.64 E-value=1.8e-15 Score=79.02 Aligned_cols=75 Identities=25% Similarity=0.331 Sum_probs=47.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc--------------EEEEEecCCcc--H--HHHHHHHHHHhc-CCC
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE--------------VGIATVSQDPD--I--IKVQGELAKSLG-WAL 58 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~--------------~~~~~v~q~~~--~--~~v~~~i~~~~~-~~~ 58 (79)
+++|+|+||||||||+++|+|+.+|+. .+++ ..++|++|++. . .++.+++..... ...
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl~~~~~~~~~ 99 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGL 99 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHHHHHHHHHHcCC
Confidence 478999999999999999999998862 1111 24789999862 2 367777764321 112
Q ss_pred ChhhHHHHHHHHHHHHh
Q 044571 59 NEKDEKERADRLRLMFS 75 (79)
Q Consensus 59 ~~~~~~~~~~~l~~~l~ 75 (79)
......+.+.++++.++
T Consensus 100 ~~~~~~~~~~~~l~~~~ 116 (190)
T TIGR01166 100 SEAEVERRVREALTAVG 116 (190)
T ss_pred CHHHHHHHHHHHHHHcC
Confidence 22222334555555544
No 57
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.63 E-value=1.5e-15 Score=80.41 Aligned_cols=75 Identities=21% Similarity=0.246 Sum_probs=48.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC----------cEEEEEecCCccH---HHHHHHHHHHhcC-CCChhhH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD----------EVGIATVSQDPDI---IKVQGELAKSLGW-ALNEKDE 63 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~----------~~~~~~v~q~~~~---~~v~~~i~~~~~~-~~~~~~~ 63 (79)
+++|+|+||||||||+++|+|+++|.. .++ ...+++++|++.. .++.+++...... .......
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~ 107 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEI 107 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHH
Confidence 478999999999999999999988762 121 1358999999743 4777777654321 1122222
Q ss_pred HHHHHHHHHHHh
Q 044571 64 KERADRLRLMFS 75 (79)
Q Consensus 64 ~~~~~~l~~~l~ 75 (79)
.+.+.++++.++
T Consensus 108 ~~~~~~~l~~~~ 119 (213)
T cd03301 108 DERVREVAELLQ 119 (213)
T ss_pred HHHHHHHHHHcC
Confidence 334555555544
No 58
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=1.6e-15 Score=82.30 Aligned_cols=75 Identities=23% Similarity=0.242 Sum_probs=49.0
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-------EEEEEecCCccH---HHHHHHHHHHhcC-CCChhhHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-------VGIATVSQDPDI---IKVQGELAKSLGW-ALNEKDEKER 66 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-------~~~~~v~q~~~~---~~v~~~i~~~~~~-~~~~~~~~~~ 66 (79)
+++|+|+||||||||+++|+|+.+|+. .+++ ..++|++|++.. .++.+++...... ........+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~ 108 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEI 108 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHH
Confidence 478999999999999999999998762 2222 247899999643 4777877643321 1122222334
Q ss_pred HHHHHHHHh
Q 044571 67 ADRLRLMFS 75 (79)
Q Consensus 67 ~~~l~~~l~ 75 (79)
+.++++.++
T Consensus 109 ~~~~l~~~g 117 (255)
T PRK11248 109 AHQMLKKVG 117 (255)
T ss_pred HHHHHHHcC
Confidence 555666554
No 59
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=1.2e-15 Score=80.68 Aligned_cols=75 Identities=21% Similarity=0.328 Sum_probs=48.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC--------cEEEEEecCCccH---HHHHHHHHHHhcC-CCChhhHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD--------EVGIATVSQDPDI---IKVQGELAKSLGW-ALNEKDEKE 65 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~--------~~~~~~v~q~~~~---~~v~~~i~~~~~~-~~~~~~~~~ 65 (79)
+++|+|+||||||||+++|+|+.+|+. .++ ...++|++|++.. .++.+++...... ........+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 107 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARR 107 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHH
Confidence 478999999999999999999988762 122 2358899999743 4777777543221 122222233
Q ss_pred HHHHHHHHHh
Q 044571 66 RADRLRLMFS 75 (79)
Q Consensus 66 ~~~~l~~~l~ 75 (79)
.+.++++.++
T Consensus 108 ~~~~~l~~~~ 117 (210)
T cd03269 108 RIDEWLERLE 117 (210)
T ss_pred HHHHHHHHcC
Confidence 4555555554
No 60
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.63 E-value=1.3e-15 Score=81.68 Aligned_cols=54 Identities=33% Similarity=0.523 Sum_probs=40.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-------------EEEEEecCCccH---HHHHHHHHHHh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-------------VGIATVSQDPDI---IKVQGELAKSL 54 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-------------~~~~~v~q~~~~---~~v~~~i~~~~ 54 (79)
+++|+|+||||||||+++|+|+++|.. .+++ ..++|++|++.. .++.+++....
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~ 100 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAA 100 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHH
Confidence 478999999999999999999988762 1111 247899999743 47888876543
No 61
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.63 E-value=1.6e-15 Score=80.40 Aligned_cols=75 Identities=20% Similarity=0.160 Sum_probs=48.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc---------------EEEEEecCCccH---HHHHHHHHHHhcC-CC
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE---------------VGIATVSQDPDI---IKVQGELAKSLGW-AL 58 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~---------------~~~~~v~q~~~~---~~v~~~i~~~~~~-~~ 58 (79)
+++|+|+||||||||+++|+|+.+|+. .+++ ..++|++|++.. .++.+++...... ..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~ 108 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGV 108 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcCC
Confidence 378999999999999999999988762 1211 247899999743 4777887654321 12
Q ss_pred ChhhHHHHHHHHHHHHh
Q 044571 59 NEKDEKERADRLRLMFS 75 (79)
Q Consensus 59 ~~~~~~~~~~~l~~~l~ 75 (79)
......+.+.++++.++
T Consensus 109 ~~~~~~~~~~~~l~~~~ 125 (214)
T cd03292 109 PPREIRKRVPAALELVG 125 (214)
T ss_pred CHHHHHHHHHHHHHHcC
Confidence 22222334455555543
No 62
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.63 E-value=1.3e-15 Score=81.06 Aligned_cols=75 Identities=21% Similarity=0.242 Sum_probs=48.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC----------------cEEEEEecCCccH---HHHHHHHHHHhcC-C
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD----------------EVGIATVSQDPDI---IKVQGELAKSLGW-A 57 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~----------------~~~~~~v~q~~~~---~~v~~~i~~~~~~-~ 57 (79)
+++|+|+||||||||+++|+|+.+|+. .++ ...++|++|++.. .++.+++...... .
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 112 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK 112 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC
Confidence 478999999999999999999988762 111 1358999999643 4778887653321 1
Q ss_pred CChhhHHHHHHHHHHHHh
Q 044571 58 LNEKDEKERADRLRLMFS 75 (79)
Q Consensus 58 ~~~~~~~~~~~~l~~~l~ 75 (79)
....+..+.+.++++.++
T Consensus 113 ~~~~~~~~~~~~~l~~~~ 130 (221)
T TIGR02211 113 KSVKEAKERAYEMLEKVG 130 (221)
T ss_pred CCHHHHHHHHHHHHHHcC
Confidence 122222334555555544
No 63
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.63 E-value=2.3e-15 Score=79.80 Aligned_cols=53 Identities=17% Similarity=0.351 Sum_probs=41.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc----------EEEEEecCCccH---HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE----------VGIATVSQDPDI---IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~----------~~~~~v~q~~~~---~~v~~~i~~~ 53 (79)
+++|+|+||+|||||+++|+|+.+|+. .+++ ..++|++|++.. .++.+++...
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~ 94 (213)
T TIGR01277 26 IVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLG 94 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhH
Confidence 478999999999999999999998862 1221 348899999744 4788887654
No 64
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.63 E-value=1.7e-15 Score=80.99 Aligned_cols=75 Identities=15% Similarity=0.075 Sum_probs=48.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC----------------cEEEEEecCCccH---HHHHHHHHHHhcC-C
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD----------------EVGIATVSQDPDI---IKVQGELAKSLGW-A 57 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~----------------~~~~~~v~q~~~~---~~v~~~i~~~~~~-~ 57 (79)
+++|+|+||||||||+++|+|+++|+. .++ ...++|++|++.. .++.+++...... .
T Consensus 38 ~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~ 117 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRG 117 (228)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcC
Confidence 478999999999999999999998762 111 1358999999744 4777887653321 1
Q ss_pred CChhhHHHHHHHHHHHHh
Q 044571 58 LNEKDEKERADRLRLMFS 75 (79)
Q Consensus 58 ~~~~~~~~~~~~l~~~l~ 75 (79)
.......+.+.++++.++
T Consensus 118 ~~~~~~~~~~~~~l~~~~ 135 (228)
T PRK10584 118 ESSRQSRNGAKALLEQLG 135 (228)
T ss_pred CCHHHHHHHHHHHHHHcC
Confidence 122222334555555554
No 65
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=1.2e-15 Score=84.58 Aligned_cols=75 Identities=15% Similarity=0.192 Sum_probs=49.4
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC------------------------------------cEEEEEecCCc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD------------------------------------EVGIATVSQDP 41 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~------------------------------------~~~~~~v~q~~ 41 (79)
+++|+|+||||||||+++|+|+++|+. .++ .+.++|+||++
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~ 114 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFA 114 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEeeCc
Confidence 479999999999999999999998862 111 12478999986
Q ss_pred cH----HHHHHHHHHHhc-CCCChhhHHHHHHHHHHHHh
Q 044571 42 DI----IKVQGELAKSLG-WALNEKDEKERADRLRLMFS 75 (79)
Q Consensus 42 ~~----~~v~~~i~~~~~-~~~~~~~~~~~~~~l~~~l~ 75 (79)
.. .++.+++..... ......+..+++.++++.++
T Consensus 115 ~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~g 153 (305)
T PRK13651 115 EYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVG 153 (305)
T ss_pred ccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcC
Confidence 32 377777754332 12222333345666666654
No 66
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.62 E-value=2e-15 Score=79.99 Aligned_cols=75 Identities=24% Similarity=0.180 Sum_probs=48.4
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC---------------cEEEEEecCCccH---HHHHHHHHHHhcC-CC
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD---------------EVGIATVSQDPDI---IKVQGELAKSLGW-AL 58 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~---------------~~~~~~v~q~~~~---~~v~~~i~~~~~~-~~ 58 (79)
+++|+|+||||||||+++|+|+.+|.. .++ ...++|++|++.. .++.+++...... ..
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~ 109 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGK 109 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcCC
Confidence 478999999999999999999988762 111 1257899999743 4677777654321 11
Q ss_pred ChhhHHHHHHHHHHHHh
Q 044571 59 NEKDEKERADRLRLMFS 75 (79)
Q Consensus 59 ~~~~~~~~~~~l~~~l~ 75 (79)
......+.+.++++.++
T Consensus 110 ~~~~~~~~~~~~l~~~~ 126 (214)
T TIGR02673 110 KEREIQRRVGAALRQVG 126 (214)
T ss_pred CHHHHHHHHHHHHHHcC
Confidence 22222334555555544
No 67
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.62 E-value=2.3e-15 Score=84.51 Aligned_cols=75 Identities=17% Similarity=0.176 Sum_probs=49.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC-----------cEEEEEecCCccH---HHHHHHHHHHhc-CCCChhh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD-----------EVGIATVSQDPDI---IKVQGELAKSLG-WALNEKD 62 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~-----------~~~~~~v~q~~~~---~~v~~~i~~~~~-~~~~~~~ 62 (79)
++||+||||||||||+++|+|+++|+. .++ ...++|+||++.. .++.+++..... ......+
T Consensus 69 i~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 148 (340)
T PRK13536 69 CFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTRE 148 (340)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHH
Confidence 479999999999999999999998872 122 1358999999744 578888764321 1222222
Q ss_pred HHHHHHHHHHHHh
Q 044571 63 EKERADRLRLMFS 75 (79)
Q Consensus 63 ~~~~~~~l~~~l~ 75 (79)
..+.+.++++.++
T Consensus 149 ~~~~~~~ll~~~~ 161 (340)
T PRK13536 149 IEAVIPSLLEFAR 161 (340)
T ss_pred HHHHHHHHHHHcC
Confidence 2334555666554
No 68
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.62 E-value=2.8e-15 Score=79.02 Aligned_cols=75 Identities=21% Similarity=0.293 Sum_probs=48.4
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC----------------cEEEEEecCCccH---HHHHHHHHHHhcC-C
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD----------------EVGIATVSQDPDI---IKVQGELAKSLGW-A 57 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~----------------~~~~~~v~q~~~~---~~v~~~i~~~~~~-~ 57 (79)
+++|+|+||||||||+++|+|+++|+. .++ .+.++|++|++.. .++.+++...... .
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~ 105 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKK 105 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhcC
Confidence 478999999999999999999998762 111 1258899998743 4777777653321 1
Q ss_pred CChhhHHHHHHHHHHHHh
Q 044571 58 LNEKDEKERADRLRLMFS 75 (79)
Q Consensus 58 ~~~~~~~~~~~~l~~~l~ 75 (79)
.......+.+.++++.++
T Consensus 106 ~~~~~~~~~~~~~l~~~~ 123 (206)
T TIGR03608 106 LSKKEKREKKKEALEKVG 123 (206)
T ss_pred CCHHHHHHHHHHHHHHcC
Confidence 122222334555665554
No 69
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.62 E-value=2.3e-15 Score=84.91 Aligned_cols=74 Identities=22% Similarity=0.403 Sum_probs=49.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC----------------cEEEEEecCCccH---HHHHHHHHHHhcCCC
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD----------------EVGIATVSQDPDI---IKVQGELAKSLGWAL 58 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~----------------~~~~~~v~q~~~~---~~v~~~i~~~~~~~~ 58 (79)
+++|+||||||||||+++|+|+.+|+. .++ .+.++|+||++.. .++.+++.......
T Consensus 25 i~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~- 103 (354)
T TIGR02142 25 VTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA- 103 (354)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhcc-
Confidence 478999999999999999999998862 111 1347899999743 57888886544321
Q ss_pred ChhhHHHHHHHHHHHHh
Q 044571 59 NEKDEKERADRLRLMFS 75 (79)
Q Consensus 59 ~~~~~~~~~~~l~~~l~ 75 (79)
...+..+++.++++.++
T Consensus 104 ~~~~~~~~~~~~l~~~g 120 (354)
T TIGR02142 104 RPSERRISFERVIELLG 120 (354)
T ss_pred ChhHHHHHHHHHHHHcC
Confidence 11222334566666554
No 70
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=2.7e-15 Score=82.73 Aligned_cols=75 Identities=20% Similarity=0.309 Sum_probs=49.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc----------------EEEEEecCCcc--H--HHHHHHHHHHhc-C
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE----------------VGIATVSQDPD--I--IKVQGELAKSLG-W 56 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~----------------~~~~~v~q~~~--~--~~v~~~i~~~~~-~ 56 (79)
+++|+|+||||||||+++|+|+.+|+. .+++ ..++|+||++. . .++.+++..... .
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~ 114 (290)
T PRK13634 35 YVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF 114 (290)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc
Confidence 478999999999999999999998862 1221 24799999863 2 477777764332 1
Q ss_pred CCChhhHHHHHHHHHHHHh
Q 044571 57 ALNEKDEKERADRLRLMFS 75 (79)
Q Consensus 57 ~~~~~~~~~~~~~l~~~l~ 75 (79)
.....+..+++.++++.++
T Consensus 115 ~~~~~~~~~~~~~~l~~~g 133 (290)
T PRK13634 115 GVSEEDAKQKAREMIELVG 133 (290)
T ss_pred CCCHHHHHHHHHHHHHHCC
Confidence 2222233345566666654
No 71
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=2.1e-15 Score=83.04 Aligned_cols=75 Identities=24% Similarity=0.327 Sum_probs=49.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC--------------cEEEEEecCCcc----HHHHHHHHHHHhc-CCC
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD--------------EVGIATVSQDPD----IIKVQGELAKSLG-WAL 58 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~--------------~~~~~~v~q~~~----~~~v~~~i~~~~~-~~~ 58 (79)
+++|+|+||||||||+++|+|+++|+. .++ ...++|+||++. ..++.+++..... ...
T Consensus 35 ~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~ 114 (287)
T PRK13637 35 FVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGL 114 (287)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHCCC
Confidence 479999999999999999999998862 111 135799999863 2477788765332 122
Q ss_pred ChhhHHHHHHHHHHHHh
Q 044571 59 NEKDEKERADRLRLMFS 75 (79)
Q Consensus 59 ~~~~~~~~~~~l~~~l~ 75 (79)
...+..+++.++++.++
T Consensus 115 ~~~~~~~~~~~~l~~~g 131 (287)
T PRK13637 115 SEEEIENRVKRAMNIVG 131 (287)
T ss_pred CHHHHHHHHHHHHHHcC
Confidence 33333345566666544
No 72
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.62 E-value=3.1e-15 Score=80.33 Aligned_cols=75 Identities=20% Similarity=0.295 Sum_probs=48.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-----------EEEEEecCCccH---HHHHHHHHHHhcC-CCChhh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-----------VGIATVSQDPDI---IKVQGELAKSLGW-ALNEKD 62 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-----------~~~~~v~q~~~~---~~v~~~i~~~~~~-~~~~~~ 62 (79)
+++|+|+||||||||+++|+|+.+|+. .+++ ..++|++|++.. .++.+++...... ......
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~ 108 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAE 108 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHH
Confidence 478999999999999999999998862 1221 257899998643 4777777543321 122222
Q ss_pred HHHHHHHHHHHHh
Q 044571 63 EKERADRLRLMFS 75 (79)
Q Consensus 63 ~~~~~~~l~~~l~ 75 (79)
..+.+.++++.++
T Consensus 109 ~~~~~~~~l~~~g 121 (236)
T TIGR03864 109 ARERIAALLARLG 121 (236)
T ss_pred HHHHHHHHHHHcC
Confidence 2334555555544
No 73
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=1.9e-15 Score=82.52 Aligned_cols=75 Identities=21% Similarity=0.251 Sum_probs=49.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC----------------cEEEEEecCCccH---HHHHHHHHHHhcC-C
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD----------------EVGIATVSQDPDI---IKVQGELAKSLGW-A 57 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~----------------~~~~~~v~q~~~~---~~v~~~i~~~~~~-~ 57 (79)
+++|+|+||||||||+++|+|+++|+. .++ ...++|++|++.. .++.+++...... .
T Consensus 52 ~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 131 (269)
T cd03294 52 IFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQG 131 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcC
Confidence 478999999999999999999998762 111 1358999998743 4778887654321 1
Q ss_pred CChhhHHHHHHHHHHHHh
Q 044571 58 LNEKDEKERADRLRLMFS 75 (79)
Q Consensus 58 ~~~~~~~~~~~~l~~~l~ 75 (79)
.......+.+.++++.++
T Consensus 132 ~~~~~~~~~~~~~l~~~~ 149 (269)
T cd03294 132 VPRAEREERAAEALELVG 149 (269)
T ss_pred CCHHHHHHHHHHHHHHcC
Confidence 122222334555666554
No 74
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=2.5e-15 Score=79.49 Aligned_cols=75 Identities=15% Similarity=0.268 Sum_probs=48.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc----------EEEEEecCCccH---HHHHHHHHHHhcCCCC-hhhH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE----------VGIATVSQDPDI---IKVQGELAKSLGWALN-EKDE 63 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~----------~~~~~v~q~~~~---~~v~~~i~~~~~~~~~-~~~~ 63 (79)
+++|+|+||||||||+++|+|+.+|+. .+++ ..++|++|++.. .++.+++......... ....
T Consensus 26 ~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~ 105 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAED 105 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccccCccHHH
Confidence 478999999999999999999998862 1222 247899999743 4777877543321111 1122
Q ss_pred HHHHHHHHHHHh
Q 044571 64 KERADRLRLMFS 75 (79)
Q Consensus 64 ~~~~~~l~~~l~ 75 (79)
.+.+.++++.++
T Consensus 106 ~~~~~~~l~~~~ 117 (211)
T cd03298 106 RQAIEVALARVG 117 (211)
T ss_pred HHHHHHHHHHcC
Confidence 334555555544
No 75
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.62 E-value=1.4e-15 Score=80.96 Aligned_cols=53 Identities=30% Similarity=0.397 Sum_probs=40.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC-------------cEEEEEecCCccH---HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD-------------EVGIATVSQDPDI---IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~-------------~~~~~~v~q~~~~---~~v~~~i~~~ 53 (79)
+++|+||||||||||+++|.|+.+|+. .++ ...++|++|++.. .++.+++...
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~ 99 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLG 99 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHH
Confidence 478999999999999999999998762 111 1348999999743 4777887654
No 76
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.62 E-value=1.9e-15 Score=79.68 Aligned_cols=52 Identities=31% Similarity=0.395 Sum_probs=39.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc---------EEEEEecCCcc----HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE---------VGIATVSQDPD----IIKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~---------~~~~~v~q~~~----~~~v~~~i~~ 52 (79)
+++|+||||||||||+++|+|+.+|+. .+++ ..++|++|++. ..++.+++..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~ 95 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLL 95 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhh
Confidence 478999999999999999999998862 2222 25899999962 2366777654
No 77
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.62 E-value=2.6e-15 Score=80.46 Aligned_cols=53 Identities=25% Similarity=0.335 Sum_probs=40.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCcE-------EEEEecCCccH---HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDEV-------GIATVSQDPDI---IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~~-------~~~~v~q~~~~---~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+.+|+. .+++. ..++++|++.. .++.+++...
T Consensus 13 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~ 78 (230)
T TIGR01184 13 FISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALA 78 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHH
Confidence 479999999999999999999998862 22222 24789998743 5788887654
No 78
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=3.8e-15 Score=79.00 Aligned_cols=74 Identities=22% Similarity=0.384 Sum_probs=48.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC----------------cEEEEEecCCccH---HHHHHHHHHHhcCCC
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD----------------EVGIATVSQDPDI---IKVQGELAKSLGWAL 58 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~----------------~~~~~~v~q~~~~---~~v~~~i~~~~~~~~ 58 (79)
+++|+|+||+|||||+++|+|+++|+. .++ ...++|++|++.. .++.+++.......
T Consensus 25 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~- 103 (214)
T cd03297 25 VTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK- 103 (214)
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC-
Confidence 479999999999999999999998762 111 1258899999743 47777776443211
Q ss_pred ChhhHHHHHHHHHHHHh
Q 044571 59 NEKDEKERADRLRLMFS 75 (79)
Q Consensus 59 ~~~~~~~~~~~l~~~l~ 75 (79)
......+.+.++++.++
T Consensus 104 ~~~~~~~~~~~~l~~~~ 120 (214)
T cd03297 104 RNREDRISVDELLDLLG 120 (214)
T ss_pred CHHHHHHHHHHHHHHcC
Confidence 11122234555555544
No 79
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.61 E-value=4e-15 Score=79.75 Aligned_cols=75 Identities=23% Similarity=0.263 Sum_probs=49.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC---------------cEEEEEecCCccH---HHHHHHHHHHhcC-CC
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD---------------EVGIATVSQDPDI---IKVQGELAKSLGW-AL 58 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~---------------~~~~~~v~q~~~~---~~v~~~i~~~~~~-~~ 58 (79)
+++|+|+||||||||+++|+|+.+|+. .++ ...++|++|++.. .++.+++...... ..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~ 112 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGV 112 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCC
Confidence 478999999999999999999998862 111 1357899999743 4778887654321 12
Q ss_pred ChhhHHHHHHHHHHHHh
Q 044571 59 NEKDEKERADRLRLMFS 75 (79)
Q Consensus 59 ~~~~~~~~~~~l~~~l~ 75 (79)
......+.+.++++.++
T Consensus 113 ~~~~~~~~~~~~l~~~~ 129 (233)
T cd03258 113 PKAEIEERVLELLELVG 129 (233)
T ss_pred CHHHHHHHHHHHHHHCC
Confidence 22222334555555554
No 80
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.61 E-value=3.2e-15 Score=82.81 Aligned_cols=75 Identities=19% Similarity=0.224 Sum_probs=49.0
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC-----------cEEEEEecCCccH---HHHHHHHHHHhc-CCCChhh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD-----------EVGIATVSQDPDI---IKVQGELAKSLG-WALNEKD 62 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~-----------~~~~~~v~q~~~~---~~v~~~i~~~~~-~~~~~~~ 62 (79)
+++|+||||||||||+++|+|+.+|+. .++ ...++|++|++.. .++.+++..... .......
T Consensus 32 ~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 111 (303)
T TIGR01288 32 CFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTRE 111 (303)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHH
Confidence 478999999999999999999998762 122 1358999999743 578888764221 1222222
Q ss_pred HHHHHHHHHHHHh
Q 044571 63 EKERADRLRLMFS 75 (79)
Q Consensus 63 ~~~~~~~l~~~l~ 75 (79)
..+.+.++++.++
T Consensus 112 ~~~~~~~ll~~~~ 124 (303)
T TIGR01288 112 IEAVIPSLLEFAR 124 (303)
T ss_pred HHHHHHHHHHHCC
Confidence 2334455555554
No 81
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=3.8e-15 Score=82.04 Aligned_cols=75 Identities=19% Similarity=0.241 Sum_probs=49.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc----------------EEEEEecCCcc--H--HHHHHHHHHHhc-C
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE----------------VGIATVSQDPD--I--IKVQGELAKSLG-W 56 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~----------------~~~~~v~q~~~--~--~~v~~~i~~~~~-~ 56 (79)
+++|+|+||||||||+++|+|+++|+. .+++ ..++|+||++. . .++.+++..... .
T Consensus 34 ~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~ 113 (288)
T PRK13643 34 YTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNF 113 (288)
T ss_pred EEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHc
Confidence 479999999999999999999998872 1221 24789999862 2 377777764332 1
Q ss_pred CCChhhHHHHHHHHHHHHh
Q 044571 57 ALNEKDEKERADRLRLMFS 75 (79)
Q Consensus 57 ~~~~~~~~~~~~~l~~~l~ 75 (79)
.....+..+++.++++.++
T Consensus 114 ~~~~~~~~~~~~~~l~~~~ 132 (288)
T PRK13643 114 GIPKEKAEKIAAEKLEMVG 132 (288)
T ss_pred CCCHHHHHHHHHHHHHHcC
Confidence 2222333345566665554
No 82
>PRK10908 cell division protein FtsE; Provisional
Probab=99.61 E-value=2.9e-15 Score=79.80 Aligned_cols=75 Identities=24% Similarity=0.197 Sum_probs=48.5
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc---------------EEEEEecCCccH---HHHHHHHHHHhcC-CC
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE---------------VGIATVSQDPDI---IKVQGELAKSLGW-AL 58 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~---------------~~~~~v~q~~~~---~~v~~~i~~~~~~-~~ 58 (79)
+++|+|+||||||||+++|+|+.+|+. .+++ ..++|++|++.. .++.+++...... ..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~ 109 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGA 109 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhcCC
Confidence 478999999999999999999998762 1211 257899999743 4777777654321 12
Q ss_pred ChhhHHHHHHHHHHHHh
Q 044571 59 NEKDEKERADRLRLMFS 75 (79)
Q Consensus 59 ~~~~~~~~~~~l~~~l~ 75 (79)
...+..+.+.++++.++
T Consensus 110 ~~~~~~~~~~~~l~~~~ 126 (222)
T PRK10908 110 SGDDIRRRVSAALDKVG 126 (222)
T ss_pred CHHHHHHHHHHHHHHcC
Confidence 22222234455555543
No 83
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=2.8e-15 Score=82.52 Aligned_cols=75 Identities=24% Similarity=0.267 Sum_probs=49.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc----------------EEEEEecCCcc--H--HHHHHHHHHHhcC-
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE----------------VGIATVSQDPD--I--IKVQGELAKSLGW- 56 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~----------------~~~~~v~q~~~--~--~~v~~~i~~~~~~- 56 (79)
+++|+|+||||||||+++|+|+++|+. .+++ ..++|+||++. . .++.+++......
T Consensus 35 ~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~ 114 (286)
T PRK13646 35 YYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNF 114 (286)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhHHHHHHhhHHHc
Confidence 479999999999999999999998872 1221 25799999862 2 3677777643321
Q ss_pred CCChhhHHHHHHHHHHHHh
Q 044571 57 ALNEKDEKERADRLRLMFS 75 (79)
Q Consensus 57 ~~~~~~~~~~~~~l~~~l~ 75 (79)
........+.+.++++.++
T Consensus 115 ~~~~~~~~~~~~~~l~~~g 133 (286)
T PRK13646 115 KMNLDEVKNYAHRLLMDLG 133 (286)
T ss_pred CCCHHHHHHHHHHHHHHcC
Confidence 2222233345666666654
No 84
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.61 E-value=3.1e-15 Score=80.56 Aligned_cols=52 Identities=17% Similarity=0.297 Sum_probs=39.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc---------------EEEEEecCCccH---HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE---------------VGIATVSQDPDI---IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~---------------~~~~~v~q~~~~---~~v~~~i~~ 52 (79)
+++|+|+||||||||+++|+|+.+|+. .+++ ..++|++|++.. .++.+++..
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~ 102 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLH 102 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhh
Confidence 478999999999999999999998762 1211 247999999743 477777754
No 85
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.61 E-value=5.3e-15 Score=79.22 Aligned_cols=75 Identities=25% Similarity=0.447 Sum_probs=48.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC-------------cEEEEEecCCccH---HHHHHHHHHHhcC-CCCh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD-------------EVGIATVSQDPDI---IKVQGELAKSLGW-ALNE 60 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~-------------~~~~~~v~q~~~~---~~v~~~i~~~~~~-~~~~ 60 (79)
+++|+|+||||||||+++|+|+.+|+. .++ ...++|++|++.. .++.+++...... ....
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~ 107 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSK 107 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcCCCH
Confidence 478999999999999999999998762 111 1247899998743 4777877653321 1112
Q ss_pred hhHHHHHHHHHHHHh
Q 044571 61 KDEKERADRLRLMFS 75 (79)
Q Consensus 61 ~~~~~~~~~l~~~l~ 75 (79)
....+.+.++++.++
T Consensus 108 ~~~~~~~~~~l~~~~ 122 (232)
T cd03218 108 KEREEKLEELLEEFH 122 (232)
T ss_pred HHHHHHHHHHHHHcC
Confidence 222234455555544
No 86
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.61 E-value=1.5e-15 Score=89.09 Aligned_cols=52 Identities=25% Similarity=0.304 Sum_probs=42.4
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-----------EEEEEecCCccH--HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-----------VGIATVSQDPDI--IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-----------~~~~~v~q~~~~--~~v~~~i~~ 52 (79)
.++|+||||||||||+++|.|+++|+. .+++ ..++||+|++.+ .++.+||..
T Consensus 363 ~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~ 430 (529)
T TIGR02868 363 RVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRL 430 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhc
Confidence 379999999999999999999999873 3343 368999999876 378888764
No 87
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=2.9e-15 Score=82.20 Aligned_cols=75 Identities=25% Similarity=0.337 Sum_probs=50.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCcc-H---HHHHHHHHHHhcC-CCCh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPD-I---IKVQGELAKSLGW-ALNE 60 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~-~---~~v~~~i~~~~~~-~~~~ 60 (79)
+++|+|+||||||||+++|+|+++|.. .+++ ..++|+||++. . .++.+++...... ....
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~ 114 (279)
T PRK13650 35 WLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPH 114 (279)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCH
Confidence 479999999999999999999998872 1222 24789999863 2 4777887643321 2222
Q ss_pred hhHHHHHHHHHHHHh
Q 044571 61 KDEKERADRLRLMFS 75 (79)
Q Consensus 61 ~~~~~~~~~l~~~l~ 75 (79)
.+..+++.++++.++
T Consensus 115 ~~~~~~~~~~l~~~g 129 (279)
T PRK13650 115 EEMKERVNEALELVG 129 (279)
T ss_pred HHHHHHHHHHHHHCC
Confidence 233345566666654
No 88
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.61 E-value=1.9e-15 Score=90.10 Aligned_cols=75 Identities=21% Similarity=0.234 Sum_probs=51.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC--------------------------cEEEEEecCCc-----cHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD--------------------------EVGIATVSQDP-----DIIKV 46 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~--------------------------~~~~~~v~q~~-----~~~~v 46 (79)
+++|+|+||||||||+++|+|+++|.. .++ ...++||+|++ +..++
T Consensus 44 ~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv 123 (623)
T PRK10261 44 TLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTV 123 (623)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCH
Confidence 479999999999999999999998751 111 12479999986 22588
Q ss_pred HHHHHHHhcC--CCChhhHHHHHHHHHHHHh
Q 044571 47 QGELAKSLGW--ALNEKDEKERADRLRLMFS 75 (79)
Q Consensus 47 ~~~i~~~~~~--~~~~~~~~~~~~~l~~~l~ 75 (79)
.+++...+.. .....+..+++.++++.++
T Consensus 124 ~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~g 154 (623)
T PRK10261 124 GEQIAESIRLHQGASREEAMVEAKRMLDQVR 154 (623)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHCC
Confidence 8888775432 2223333345666666654
No 89
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.61 E-value=2.3e-15 Score=79.64 Aligned_cols=75 Identities=25% Similarity=0.292 Sum_probs=47.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCcc----HHHHHHHHHHHhcC-CCCh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPD----IIKVQGELAKSLGW-ALNE 60 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~----~~~v~~~i~~~~~~-~~~~ 60 (79)
+++|+|+||||||||+++|+|+++|+. .+++ ..++|++|++. ..++.+++...... ....
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~ 108 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPE 108 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcCCCH
Confidence 478999999999999999999998762 1221 24789999863 24677777543221 1122
Q ss_pred hhHHHHHHHHHHHHh
Q 044571 61 KDEKERADRLRLMFS 75 (79)
Q Consensus 61 ~~~~~~~~~l~~~l~ 75 (79)
....+.+.++++.++
T Consensus 109 ~~~~~~~~~~l~~~~ 123 (211)
T cd03225 109 EEIEERVEEALELVG 123 (211)
T ss_pred HHHHHHHHHHHHHcC
Confidence 222334555555544
No 90
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=3.4e-15 Score=83.50 Aligned_cols=75 Identities=24% Similarity=0.212 Sum_probs=50.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc---------------EEEEEecCCcc-----HHHHHHHHHHHhcC-
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE---------------VGIATVSQDPD-----IIKVQGELAKSLGW- 56 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~---------------~~~~~v~q~~~-----~~~v~~~i~~~~~~- 56 (79)
+++|+|+||||||||+++|+|+++++. .+++ ..++||||++. .+++.+++.+.+..
T Consensus 43 ~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~ 122 (327)
T PRK11308 43 TLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN 122 (327)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc
Confidence 479999999999999999999998761 1111 25899999972 24667776654432
Q ss_pred -CCChhhHHHHHHHHHHHHh
Q 044571 57 -ALNEKDEKERADRLRLMFS 75 (79)
Q Consensus 57 -~~~~~~~~~~~~~l~~~l~ 75 (79)
.....+..+++.++++.++
T Consensus 123 ~~~~~~~~~~~~~~~l~~~g 142 (327)
T PRK11308 123 TSLSAAERREKALAMMAKVG 142 (327)
T ss_pred cCCCHHHHHHHHHHHHHHCC
Confidence 1222333345666666654
No 91
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.61 E-value=3.7e-15 Score=82.52 Aligned_cols=75 Identities=16% Similarity=0.218 Sum_probs=49.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-----------EEEEEecCCccH---HHHHHHHHHHhcC-CCChhh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-----------VGIATVSQDPDI---IKVQGELAKSLGW-ALNEKD 62 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-----------~~~~~v~q~~~~---~~v~~~i~~~~~~-~~~~~~ 62 (79)
+++|+||||+|||||+++|.|+++|+. .+++ ..++|++|++.. .++.+++...... .....+
T Consensus 30 i~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~ 109 (301)
T TIGR03522 30 IVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQL 109 (301)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHH
Confidence 479999999999999999999998872 1221 258999999743 4788887643321 222222
Q ss_pred HHHHHHHHHHHHh
Q 044571 63 EKERADRLRLMFS 75 (79)
Q Consensus 63 ~~~~~~~l~~~l~ 75 (79)
..+.+.++++.++
T Consensus 110 ~~~~~~~~l~~~g 122 (301)
T TIGR03522 110 LKQRVEEMIELVG 122 (301)
T ss_pred HHHHHHHHHHHCC
Confidence 2334555666554
No 92
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=3.1e-15 Score=81.93 Aligned_cols=75 Identities=20% Similarity=0.208 Sum_probs=49.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCcc--H--HHHHHHHHHHhcC-CCCh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPD--I--IKVQGELAKSLGW-ALNE 60 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~--~--~~v~~~i~~~~~~-~~~~ 60 (79)
+++|+|+||||||||+++|.|+++|+. .+++ ..++|+||++. . .++.+++...... ....
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~ 112 (274)
T PRK13647 33 KTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDK 112 (274)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCH
Confidence 479999999999999999999998862 1221 25899999863 1 4777777643221 1222
Q ss_pred hhHHHHHHHHHHHHh
Q 044571 61 KDEKERADRLRLMFS 75 (79)
Q Consensus 61 ~~~~~~~~~l~~~l~ 75 (79)
....+.+.++++.++
T Consensus 113 ~~~~~~~~~~l~~~~ 127 (274)
T PRK13647 113 DEVERRVEEALKAVR 127 (274)
T ss_pred HHHHHHHHHHHHHCC
Confidence 223345556666554
No 93
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.60 E-value=5.2e-15 Score=79.72 Aligned_cols=75 Identities=24% Similarity=0.272 Sum_probs=49.0
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC------------cEEEEEecCCccH---HHHHHHHHHHhcC-CCChh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD------------EVGIATVSQDPDI---IKVQGELAKSLGW-ALNEK 61 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~------------~~~~~~v~q~~~~---~~v~~~i~~~~~~-~~~~~ 61 (79)
+++|+|+||+|||||+++|+|+.+|+. .++ ...++|++|++.. .++.+++...... .....
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 108 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKE 108 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCCCHH
Confidence 478999999999999999999998762 121 1357899998743 4778887643221 11222
Q ss_pred hHHHHHHHHHHHHh
Q 044571 62 DEKERADRLRLMFS 75 (79)
Q Consensus 62 ~~~~~~~~l~~~l~ 75 (79)
...+.+.++++.++
T Consensus 109 ~~~~~~~~~l~~l~ 122 (242)
T cd03295 109 KIRERADELLALVG 122 (242)
T ss_pred HHHHHHHHHHHHcC
Confidence 22334555666554
No 94
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.60 E-value=5.2e-15 Score=78.35 Aligned_cols=53 Identities=21% Similarity=0.253 Sum_probs=40.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC--------------cEEEEEecCCccH---HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD--------------EVGIATVSQDPDI---IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~--------------~~~~~~v~q~~~~---~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+.+|+. .++ ...++|++|++.. .++.+++...
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~ 100 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLA 100 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhH
Confidence 478999999999999999999998762 111 1347899999743 4777877653
No 95
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.60 E-value=3.7e-15 Score=84.02 Aligned_cols=53 Identities=32% Similarity=0.502 Sum_probs=40.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC----------------cEEEEEecCCccH---HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD----------------EVGIATVSQDPDI---IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~----------------~~~~~~v~q~~~~---~~v~~~i~~~ 53 (79)
+++|+||||||||||+++|+|+++|+. .++ .+.++|+||++.. .++.+++...
T Consensus 26 ~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~ 100 (352)
T PRK11144 26 ITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYG 100 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhh
Confidence 478999999999999999999998762 111 1358899999743 5788887654
No 96
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.60 E-value=8.4e-16 Score=83.78 Aligned_cols=56 Identities=30% Similarity=0.416 Sum_probs=44.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---------CCC----------cEEEEEecCCc---cHHHHHHHHHHHhcC
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---------IFD----------EVGIATVSQDP---DIIKVQGELAKSLGW 56 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---------~~~----------~~~~~~v~q~~---~~~~v~~~i~~~~~~ 56 (79)
+.||.|+||+|||||+++|.|+.+|+. .++ .+.++|||||. +..++..|+....+.
T Consensus 26 vTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~ 103 (352)
T COG4148 26 ITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWK 103 (352)
T ss_pred eEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhcc
Confidence 468999999999999999999999982 111 25799999997 446777887766553
No 97
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=4e-15 Score=79.77 Aligned_cols=75 Identities=17% Similarity=0.293 Sum_probs=48.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc----------EEEEEecCCccH---HHHHHHHHHHhcCCCC-hhhH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE----------VGIATVSQDPDI---IKVQGELAKSLGWALN-EKDE 63 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~----------~~~~~v~q~~~~---~~v~~~i~~~~~~~~~-~~~~ 63 (79)
+++|+|+||||||||+++|+|+.+|.. .+++ ..++|++|++.. .++.+++......... ....
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 106 (232)
T PRK10771 27 RVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQ 106 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccccCCCHHH
Confidence 478999999999999999999998762 1221 358899998743 4777777543221111 1122
Q ss_pred HHHHHHHHHHHh
Q 044571 64 KERADRLRLMFS 75 (79)
Q Consensus 64 ~~~~~~l~~~l~ 75 (79)
.+.+.++++.++
T Consensus 107 ~~~~~~~l~~~~ 118 (232)
T PRK10771 107 REKLHAIARQMG 118 (232)
T ss_pred HHHHHHHHHHcC
Confidence 334556666554
No 98
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.59 E-value=3.8e-15 Score=85.08 Aligned_cols=75 Identities=20% Similarity=0.274 Sum_probs=50.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC------------cEEEEEecCCccH---HHHHHHHHHHhcC---CCC
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD------------EVGIATVSQDPDI---IKVQGELAKSLGW---ALN 59 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~------------~~~~~~v~q~~~~---~~v~~~i~~~~~~---~~~ 59 (79)
+++|+||||||||||+|+|+|+++|.. .++ .+.+++++|++.. +++.+++...... ...
T Consensus 31 iv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~ 110 (402)
T PRK09536 31 LVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFD 110 (402)
T ss_pred EEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhccccc
Confidence 478999999999999999999998862 111 1358999998743 5788877653221 111
Q ss_pred --hhhHHHHHHHHHHHHh
Q 044571 60 --EKDEKERADRLRLMFS 75 (79)
Q Consensus 60 --~~~~~~~~~~l~~~l~ 75 (79)
.....+.+.++++.++
T Consensus 111 ~~~~~~~~~v~~~le~vg 128 (402)
T PRK09536 111 TWTETDRAAVERAMERTG 128 (402)
T ss_pred CCCHHHHHHHHHHHHHcC
Confidence 1223345666666655
No 99
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.59 E-value=6.2e-15 Score=78.68 Aligned_cols=53 Identities=26% Similarity=0.278 Sum_probs=40.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-------EEEEEecCCccH-----HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-------VGIATVSQDPDI-----IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-------~~~~~v~q~~~~-----~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|..+|+. .+++ ..++|++|++.. .++.+++...
T Consensus 8 ~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 8 LLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 479999999999999999999988762 2322 358999998643 4677777553
No 100
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.59 E-value=8.3e-15 Score=78.27 Aligned_cols=75 Identities=20% Similarity=0.264 Sum_probs=47.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhh-----cccC---CCCc--------------EEEEEecCCccH--HHHHHHHHHHhcC
Q 044571 1 MEGLYGISCVGKTTLANFVGNQL-----RQEK---IFDE--------------VGIATVSQDPDI--IKVQGELAKSLGW 56 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~-----~~~~---~~~~--------------~~~~~v~q~~~~--~~v~~~i~~~~~~ 56 (79)
+++|+|+||||||||+++|+|+. +|.. .+++ ..++|++|++.. .++.+++......
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~ 107 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRL 107 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhccccHHHHHHhHHHh
Confidence 47899999999999999999998 6651 1111 247899999754 4677776543321
Q ss_pred -CCCh-hhHHHHHHHHHHHHh
Q 044571 57 -ALNE-KDEKERADRLRLMFS 75 (79)
Q Consensus 57 -~~~~-~~~~~~~~~l~~~l~ 75 (79)
.... ....+++.++++.++
T Consensus 108 ~~~~~~~~~~~~~~~~l~~~~ 128 (227)
T cd03260 108 HGIKLKEELDERVEEALRKAA 128 (227)
T ss_pred cCCCcHHHHHHHHHHHHHHcC
Confidence 1111 112334555666554
No 101
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.59 E-value=5.9e-15 Score=80.62 Aligned_cols=54 Identities=28% Similarity=0.499 Sum_probs=40.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC---------------cEEEEEecCCccH---HHHHHHHHHHh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD---------------EVGIATVSQDPDI---IKVQGELAKSL 54 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~---------------~~~~~~v~q~~~~---~~v~~~i~~~~ 54 (79)
+++|+|+||||||||+++|+|+.+|+. .++ ...++|++|++.. .++.+++....
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~ 109 (269)
T PRK11831 35 ITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPL 109 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHH
Confidence 478999999999999999999998762 111 1247899999743 47788876543
No 102
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.59 E-value=4.3e-15 Score=83.16 Aligned_cols=75 Identities=23% Similarity=0.242 Sum_probs=50.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc---C---CCCc----------------EEEEEecCCcc-----HHHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE---K---IFDE----------------VGIATVSQDPD-----IIKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~---~---~~~~----------------~~~~~v~q~~~-----~~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|++++. . .+++ ..++||||++. .+++.+++.+.
T Consensus 44 ~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~ 123 (330)
T PRK09473 44 TLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEV 123 (330)
T ss_pred EEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHH
Confidence 47999999999999999999999873 1 1221 25899999972 25677777765
Q ss_pred hcCC--CChhhHHHHHHHHHHHHh
Q 044571 54 LGWA--LNEKDEKERADRLRLMFS 75 (79)
Q Consensus 54 ~~~~--~~~~~~~~~~~~l~~~l~ 75 (79)
+... ....+..+++.++++.++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~L~~vg 147 (330)
T PRK09473 124 LMLHKGMSKAEAFEESVRMLDAVK 147 (330)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcC
Confidence 5321 222233345666666654
No 103
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=5.2e-15 Score=82.73 Aligned_cols=75 Identities=21% Similarity=0.207 Sum_probs=49.5
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc----cC---CCCc----------------EEEEEecCCcc-----HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ----EK---IFDE----------------VGIATVSQDPD-----IIKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~----~~---~~~~----------------~~~~~v~q~~~-----~~~v~~~i~~ 52 (79)
+++|+|+||||||||+++|.|++++ +. .+++ +.++|+||++. .+++.+++.+
T Consensus 35 ~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~ 114 (326)
T PRK11022 35 VVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIME 114 (326)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHH
Confidence 4799999999999999999999873 21 1221 24899999972 2466677766
Q ss_pred HhcC--CCChhhHHHHHHHHHHHHh
Q 044571 53 SLGW--ALNEKDEKERADRLRLMFS 75 (79)
Q Consensus 53 ~~~~--~~~~~~~~~~~~~l~~~l~ 75 (79)
.+.. .....+..+++.++++.++
T Consensus 115 ~l~~~~~~~~~~~~~~~~~~L~~~g 139 (326)
T PRK11022 115 AIKVHQGGNKKTRRQRAIDLLNQVG 139 (326)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHCC
Confidence 5532 1222333445666666654
No 104
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=5.8e-15 Score=79.48 Aligned_cols=53 Identities=30% Similarity=0.417 Sum_probs=40.4
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC-------------cEEEEEecCCccH---HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD-------------EVGIATVSQDPDI---IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~-------------~~~~~~v~q~~~~---~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|.|+.+|+. .++ ...++|++|++.. .++.+++...
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~ 102 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAV 102 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhh
Confidence 478999999999999999999988762 111 1358999999743 4777877643
No 105
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.59 E-value=5.5e-15 Score=76.83 Aligned_cols=42 Identities=24% Similarity=0.415 Sum_probs=34.9
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhcccC---CCC------------cEEEEEecCCccH
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQEK---IFD------------EVGIATVSQDPDI 43 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~~---~~~------------~~~~~~v~q~~~~ 43 (79)
+||+|.||||||||+|++.|.++|+. .|+ .+.+-++||||+.
T Consensus 42 laiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnt 98 (267)
T COG4167 42 LAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNT 98 (267)
T ss_pred EEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCcc
Confidence 68999999999999999999999982 222 3468899999854
No 106
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.58 E-value=7.2e-15 Score=78.37 Aligned_cols=75 Identities=21% Similarity=0.175 Sum_probs=48.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC--------------------cEEEEEecCCccH---HHHHHHHHHHh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD--------------------EVGIATVSQDPDI---IKVQGELAKSL 54 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~--------------------~~~~~~v~q~~~~---~~v~~~i~~~~ 54 (79)
+++|+|+||||||||+++|+|+++|+. .++ ...++|++|++.. .++.+++...+
T Consensus 36 ~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 115 (224)
T TIGR02324 36 CVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPL 115 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHH
Confidence 478999999999999999999988762 121 1247899999743 46777776543
Q ss_pred cC-CCChhhHHHHHHHHHHHHh
Q 044571 55 GW-ALNEKDEKERADRLRLMFS 75 (79)
Q Consensus 55 ~~-~~~~~~~~~~~~~l~~~l~ 75 (79)
.. ........+.+.++++.++
T Consensus 116 ~~~~~~~~~~~~~~~~~l~~~~ 137 (224)
T TIGR02324 116 LERGVPREAARARARELLARLN 137 (224)
T ss_pred HHcCCCHHHHHHHHHHHHHHcC
Confidence 21 2222222334455555544
No 107
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.58 E-value=1e-14 Score=85.14 Aligned_cols=75 Identities=27% Similarity=0.337 Sum_probs=56.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC-------CCC----------------cEEEEEecCCc-----cHHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK-------IFD----------------EVGIATVSQDP-----DIIKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~-------~~~----------------~~~~~~v~q~~-----~~~~v~~~i~~ 52 (79)
++||+|+|||||||++++|.|++++.. .|+ +..++++||++ +..++.++|.+
T Consensus 37 ~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E 116 (539)
T COG1123 37 ILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIRE 116 (539)
T ss_pred EEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHH
Confidence 479999999999999999999998761 122 24799999997 44788899988
Q ss_pred HhcCCC--ChhhHHHHHHHHHHHHh
Q 044571 53 SLGWAL--NEKDEKERADRLRLMFS 75 (79)
Q Consensus 53 ~~~~~~--~~~~~~~~~~~l~~~l~ 75 (79)
.+..+. ...+..+++.++++.++
T Consensus 117 ~~~~h~~~~~~ea~~~a~elL~~Vg 141 (539)
T COG1123 117 ALRLHGKGSRAEARKRAVELLEQVG 141 (539)
T ss_pred HHHHhccccHHHHHHHHHHHHHHcC
Confidence 775433 34445567888888776
No 108
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=9.5e-15 Score=78.58 Aligned_cols=53 Identities=21% Similarity=0.302 Sum_probs=40.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC---------------cEEEEEecCCccH---HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD---------------EVGIATVSQDPDI---IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~---------------~~~~~~v~q~~~~---~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+++|+. .++ ...++|++|++.. .++.+++...
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 102 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSG 102 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhh
Confidence 478999999999999999999998762 111 1248899998643 5777777543
No 109
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=1e-14 Score=79.72 Aligned_cols=75 Identities=29% Similarity=0.414 Sum_probs=46.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc--------------EEEEEecCCccH----HHHHHHHHHHhcC-CC
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE--------------VGIATVSQDPDI----IKVQGELAKSLGW-AL 58 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~--------------~~~~~v~q~~~~----~~v~~~i~~~~~~-~~ 58 (79)
+++|+|+||||||||+++|+|+++|+. .+++ ..++|++|++.. .++.+++...... ..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~ 108 (271)
T PRK13638 29 VTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGV 108 (271)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHcCC
Confidence 478999999999999999999998862 1111 247899998642 2456666543221 11
Q ss_pred ChhhHHHHHHHHHHHHh
Q 044571 59 NEKDEKERADRLRLMFS 75 (79)
Q Consensus 59 ~~~~~~~~~~~l~~~l~ 75 (79)
...+..+.+.++++.++
T Consensus 109 ~~~~~~~~~~~~l~~~~ 125 (271)
T PRK13638 109 PEAEITRRVDEALTLVD 125 (271)
T ss_pred CHHHHHHHHHHHHHHcC
Confidence 22222234455555543
No 110
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=7e-15 Score=80.71 Aligned_cols=75 Identities=25% Similarity=0.289 Sum_probs=49.4
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCcc-H---HHHHHHHHHHhcC-CCCh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPD-I---IKVQGELAKSLGW-ALNE 60 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~-~---~~v~~~i~~~~~~-~~~~ 60 (79)
+++|+|+||+|||||+++|+|+.+|+. .+++ ..++|+||++. . .++.+++...... ....
T Consensus 35 ~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~ 114 (279)
T PRK13635 35 WVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPR 114 (279)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCH
Confidence 478999999999999999999998872 1222 25899999873 2 4777777543321 1222
Q ss_pred hhHHHHHHHHHHHHh
Q 044571 61 KDEKERADRLRLMFS 75 (79)
Q Consensus 61 ~~~~~~~~~l~~~l~ 75 (79)
.+..+.+.++++.++
T Consensus 115 ~~~~~~~~~~l~~~g 129 (279)
T PRK13635 115 EEMVERVDQALRQVG 129 (279)
T ss_pred HHHHHHHHHHHHHcC
Confidence 223344556666544
No 111
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.58 E-value=7.5e-15 Score=79.84 Aligned_cols=52 Identities=19% Similarity=0.200 Sum_probs=40.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-------EEEEEecCCccH---HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-------VGIATVSQDPDI---IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-------~~~~~v~q~~~~---~~v~~~i~~ 52 (79)
+++|+|+||||||||+++|+|+.+|+. .+++ ..++|++|++.. .++.+++..
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~ 104 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGL 104 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHh
Confidence 478999999999999999999998862 2222 247899999743 467777654
No 112
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=1.3e-14 Score=78.21 Aligned_cols=52 Identities=21% Similarity=0.195 Sum_probs=39.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC------------------cEEEEEecCCccH---HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD------------------EVGIATVSQDPDI---IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~------------------~~~~~~v~q~~~~---~~v~~~i~~ 52 (79)
+++|+|+||||||||+++|+|+.+|+. .++ ...++|++|++.. .++.+++..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~ 105 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIE 105 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHH
Confidence 478999999999999999999998762 111 1247899998743 477888753
No 113
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.58 E-value=6.5e-15 Score=77.80 Aligned_cols=53 Identities=21% Similarity=0.353 Sum_probs=40.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC----------cEEEEEecCCccH---HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD----------EVGIATVSQDPDI---IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~----------~~~~~~v~q~~~~---~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+.+|+. .++ ...++|++|++.. .++.+++...
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 96 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLL 96 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHH
Confidence 478999999999999999999988762 111 1257899998643 4777877554
No 114
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.58 E-value=2.9e-15 Score=78.97 Aligned_cols=51 Identities=24% Similarity=0.248 Sum_probs=39.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCcEEEEEecCCccH--HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDEVGIATVSQDPDI--IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~~~~~~v~q~~~~--~~v~~~i~~ 52 (79)
+++|+|+||||||||+++|+|+.+|+. .+++ .++|++|++.. .++.+++..
T Consensus 33 ~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-~i~~~~q~~~l~~~t~~enl~~ 88 (204)
T cd03250 33 LVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-SIAYVSQEPWIQNGTIRENILF 88 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-EEEEEecCchhccCcHHHHhcc
Confidence 478999999999999999999998873 3444 68999999754 355666543
No 115
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.58 E-value=1.3e-14 Score=78.04 Aligned_cols=75 Identities=16% Similarity=0.115 Sum_probs=48.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC--------------cEEEEEecCCccH---HHHHHHHHHHhc--CCC
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD--------------EVGIATVSQDPDI---IKVQGELAKSLG--WAL 58 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~--------------~~~~~~v~q~~~~---~~v~~~i~~~~~--~~~ 58 (79)
+++|+|+||+|||||+++|+|+++|+. .++ ...++|++|++.. .++.+++..... ...
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 108 (240)
T PRK09493 29 VVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGA 108 (240)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCC
Confidence 478999999999999999999998762 111 1257899998643 477777754321 111
Q ss_pred ChhhHHHHHHHHHHHHh
Q 044571 59 NEKDEKERADRLRLMFS 75 (79)
Q Consensus 59 ~~~~~~~~~~~l~~~l~ 75 (79)
......+.+.++++.++
T Consensus 109 ~~~~~~~~~~~~l~~~g 125 (240)
T PRK09493 109 SKEEAEKQARELLAKVG 125 (240)
T ss_pred CHHHHHHHHHHHHHHcC
Confidence 22222334555666554
No 116
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.58 E-value=8.3e-15 Score=79.66 Aligned_cols=75 Identities=15% Similarity=0.181 Sum_probs=48.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH---HHHHHHHHHHhcCC-CChh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI---IKVQGELAKSLGWA-LNEK 61 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~---~~v~~~i~~~~~~~-~~~~ 61 (79)
+++|+|+||||||||+++|+|+.+|+. .+++ ..++|++|++.. .++.+++....... ....
T Consensus 30 ~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 109 (258)
T PRK13548 30 VVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRA 109 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcH
Confidence 478999999999999999999988762 1211 247899998743 47777776543211 1112
Q ss_pred hHHHHHHHHHHHHh
Q 044571 62 DEKERADRLRLMFS 75 (79)
Q Consensus 62 ~~~~~~~~l~~~l~ 75 (79)
...+.+.++++.++
T Consensus 110 ~~~~~~~~~l~~~~ 123 (258)
T PRK13548 110 EDDALVAAALAQVD 123 (258)
T ss_pred HHHHHHHHHHHHcC
Confidence 22234555555544
No 117
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.58 E-value=1.1e-14 Score=79.55 Aligned_cols=75 Identities=19% Similarity=0.243 Sum_probs=46.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC------------cEEEEEecCCcc-----HHHHHHHHHHHhcCC--C
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD------------EVGIATVSQDPD-----IIKVQGELAKSLGWA--L 58 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~------------~~~~~~v~q~~~-----~~~v~~~i~~~~~~~--~ 58 (79)
+++|+|+||||||||+++|+|+++|+. .++ ...++|++|++. ..++.+++...+... .
T Consensus 41 ~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~ 120 (267)
T PRK15112 41 TLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDL 120 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCC
Confidence 478999999999999999999998862 111 125889999863 135555554433211 1
Q ss_pred ChhhHHHHHHHHHHHHh
Q 044571 59 NEKDEKERADRLRLMFS 75 (79)
Q Consensus 59 ~~~~~~~~~~~l~~~l~ 75 (79)
......+.+.++++.++
T Consensus 121 ~~~~~~~~~~~~l~~~~ 137 (267)
T PRK15112 121 EPEQREKQIIETLRQVG 137 (267)
T ss_pred CHHHHHHHHHHHHHHcC
Confidence 22222334455555543
No 118
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=4.1e-15 Score=81.73 Aligned_cols=75 Identities=20% Similarity=0.227 Sum_probs=49.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC------CCCc------------EEEEEecCCcc----HHHHHHHHHHHhcC-C
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK------IFDE------------VGIATVSQDPD----IIKVQGELAKSLGW-A 57 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~------~~~~------------~~~~~v~q~~~----~~~v~~~i~~~~~~-~ 57 (79)
+++|+|+||||||||+++|+|+.+|.. .+++ ..++|+||++. ..++.+++...... .
T Consensus 35 ~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~ 114 (282)
T PRK13640 35 WTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRA 114 (282)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCC
Confidence 479999999999999999999987752 1111 25799999973 24788887643321 1
Q ss_pred CChhhHHHHHHHHHHHHh
Q 044571 58 LNEKDEKERADRLRLMFS 75 (79)
Q Consensus 58 ~~~~~~~~~~~~l~~~l~ 75 (79)
....+..+++.++++.++
T Consensus 115 ~~~~~~~~~~~~~l~~~~ 132 (282)
T PRK13640 115 VPRPEMIKIVRDVLADVG 132 (282)
T ss_pred CCHHHHHHHHHHHHHHCC
Confidence 222233345556666554
No 119
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.58 E-value=9.5e-15 Score=78.25 Aligned_cols=53 Identities=23% Similarity=0.276 Sum_probs=38.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc----cC---CCCc----------EEEEEecCCcc-----HHHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ----EK---IFDE----------VGIATVSQDPD-----IIKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~----~~---~~~~----------~~~~~v~q~~~-----~~~v~~~i~~~ 53 (79)
+++|+|+||+|||||+++|+|+.+| +. .+++ ..++|++|++. ..++.+++...
T Consensus 14 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~ 88 (230)
T TIGR02770 14 VLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIET 88 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHH
Confidence 4789999999999999999999987 41 1221 36899999963 13566665443
No 120
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=1.1e-14 Score=80.17 Aligned_cols=75 Identities=20% Similarity=0.247 Sum_probs=49.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc----------------EEEEEecCCcc--H--HHHHHHHHHHhc-C
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE----------------VGIATVSQDPD--I--IKVQGELAKSLG-W 56 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~----------------~~~~~v~q~~~--~--~~v~~~i~~~~~-~ 56 (79)
+++|+|+||+|||||+++|+|+++|+. .+++ ..++|++|++. . .++.+++..... .
T Consensus 35 ~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~ 114 (287)
T PRK13641 35 FVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF 114 (287)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc
Confidence 478999999999999999999998872 1111 24789999862 2 477777764321 1
Q ss_pred CCChhhHHHHHHHHHHHHh
Q 044571 57 ALNEKDEKERADRLRLMFS 75 (79)
Q Consensus 57 ~~~~~~~~~~~~~l~~~l~ 75 (79)
.....+..+++.++++.++
T Consensus 115 ~~~~~~~~~~~~~~l~~~g 133 (287)
T PRK13641 115 GFSEDEAKEKALKWLKKVG 133 (287)
T ss_pred CCCHHHHHHHHHHHHHHcC
Confidence 2222233345566666654
No 121
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=8.8e-15 Score=80.15 Aligned_cols=75 Identities=27% Similarity=0.317 Sum_probs=48.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC-------------cEEEEEecCCccH----HHHHHHHHHHhcC-CCC
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD-------------EVGIATVSQDPDI----IKVQGELAKSLGW-ALN 59 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~-------------~~~~~~v~q~~~~----~~v~~~i~~~~~~-~~~ 59 (79)
+++|+|+||+|||||+++|+|+++|+. .++ ...++|++|++.. .++.+++...... ...
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~ 109 (274)
T PRK13644 30 YIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLP 109 (274)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCC
Confidence 478999999999999999999998862 111 1247899998642 4777777543211 122
Q ss_pred hhhHHHHHHHHHHHHh
Q 044571 60 EKDEKERADRLRLMFS 75 (79)
Q Consensus 60 ~~~~~~~~~~l~~~l~ 75 (79)
.....+.+.++++.++
T Consensus 110 ~~~~~~~~~~~l~~~g 125 (274)
T PRK13644 110 PIEIRKRVDRALAEIG 125 (274)
T ss_pred HHHHHHHHHHHHHHCC
Confidence 2223345556666554
No 122
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.57 E-value=1.5e-14 Score=78.12 Aligned_cols=53 Identities=25% Similarity=0.333 Sum_probs=39.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc-----C---CCCc--------------EEEEEecCCccH--HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE-----K---IFDE--------------VGIATVSQDPDI--IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~-----~---~~~~--------------~~~~~v~q~~~~--~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|.|+.+|+ . .+++ ..++|+||++.. .++.+++...
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~ 105 (247)
T TIGR00972 29 VTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYG 105 (247)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCCCCHHHHHHhH
Confidence 47899999999999999999998764 2 1111 248899998643 5677777654
No 123
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.57 E-value=1.1e-14 Score=77.85 Aligned_cols=52 Identities=23% Similarity=0.335 Sum_probs=39.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH--HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI--IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~--~~v~~~i~~ 52 (79)
+++|+|+||||||||+++|+|+.+|+. .+++ ..++|++|++.. .++.+++..
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~ 103 (225)
T PRK10247 35 FKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIF 103 (225)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHHHHh
Confidence 478999999999999999999988762 1221 357899999743 367777654
No 124
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.57 E-value=2.7e-15 Score=77.69 Aligned_cols=42 Identities=26% Similarity=0.282 Sum_probs=36.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCcEEEEEecCCcc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDEVGIATVSQDPD 42 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~~~~~~v~q~~~ 42 (79)
+++|+|+||||||||+++|+|+++|+. .+++..+++++|++.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~ 71 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYID 71 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCC
Confidence 478999999999999999999998873 456667899999864
No 125
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=1.2e-14 Score=79.89 Aligned_cols=75 Identities=24% Similarity=0.313 Sum_probs=49.5
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc--------------EEEEEecCCcc----HHHHHHHHHHHhc-CCC
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE--------------VGIATVSQDPD----IIKVQGELAKSLG-WAL 58 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~--------------~~~~~v~q~~~----~~~v~~~i~~~~~-~~~ 58 (79)
+++|+|+||+|||||+++|+|+.+|.. .+++ ..++|+||++. ..++.+++..... ...
T Consensus 34 ~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~ 113 (283)
T PRK13636 34 VTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKL 113 (283)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCC
Confidence 479999999999999999999998862 1111 24799999873 1477777754322 122
Q ss_pred ChhhHHHHHHHHHHHHh
Q 044571 59 NEKDEKERADRLRLMFS 75 (79)
Q Consensus 59 ~~~~~~~~~~~l~~~l~ 75 (79)
......+.+..+++.++
T Consensus 114 ~~~~~~~~~~~~l~~~g 130 (283)
T PRK13636 114 PEDEVRKRVDNALKRTG 130 (283)
T ss_pred CHHHHHHHHHHHHHHCC
Confidence 22333345566666554
No 126
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.57 E-value=7.3e-15 Score=85.84 Aligned_cols=75 Identities=16% Similarity=0.305 Sum_probs=49.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-------------EEEEEecCCccH---HHHHHHHHHHhcC----C
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-------------VGIATVSQDPDI---IKVQGELAKSLGW----A 57 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-------------~~~~~v~q~~~~---~~v~~~i~~~~~~----~ 57 (79)
+++|+||||||||||+++|+|+++|+. .+++ ..++|++|++.. .++.+++...... .
T Consensus 32 ~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 111 (501)
T PRK10762 32 VMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFG 111 (501)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccC
Confidence 478999999999999999999998862 1221 248999998643 5788887654321 1
Q ss_pred -CChhhHHHHHHHHHHHHh
Q 044571 58 -LNEKDEKERADRLRLMFS 75 (79)
Q Consensus 58 -~~~~~~~~~~~~l~~~l~ 75 (79)
.......+++.++++.++
T Consensus 112 ~~~~~~~~~~~~~~l~~~~ 130 (501)
T PRK10762 112 RIDWKKMYAEADKLLARLN 130 (501)
T ss_pred ccCHHHHHHHHHHHHHHcC
Confidence 111222335566666654
No 127
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.57 E-value=1.4e-14 Score=78.44 Aligned_cols=75 Identities=17% Similarity=0.065 Sum_probs=47.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC--CCCc------------EEEEEecCCccH---HHHHHHHHHHhcCCCChhhH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK--IFDE------------VGIATVSQDPDI---IKVQGELAKSLGWALNEKDE 63 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~--~~~~------------~~~~~v~q~~~~---~~v~~~i~~~~~~~~~~~~~ 63 (79)
+++|+|+||||||||+++|.|+.++.. .+++ ..++|++|++.. .++.+++.............
T Consensus 24 i~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~ 103 (248)
T PRK03695 24 ILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAV 103 (248)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcCccCCCcHHH
Confidence 478999999999999999999986531 1221 247899998632 46777765432211112222
Q ss_pred HHHHHHHHHHHh
Q 044571 64 KERADRLRLMFS 75 (79)
Q Consensus 64 ~~~~~~l~~~l~ 75 (79)
.+.+.++++.++
T Consensus 104 ~~~~~~~l~~~~ 115 (248)
T PRK03695 104 ASALNEVAEALG 115 (248)
T ss_pred HHHHHHHHHHcC
Confidence 334556666554
No 128
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.57 E-value=8.1e-15 Score=76.82 Aligned_cols=75 Identities=23% Similarity=0.258 Sum_probs=50.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC------CCC--------cEEEEEecCCcc---HHHHHHHHHHHhc-CCCChhh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK------IFD--------EVGIATVSQDPD---IIKVQGELAKSLG-WALNEKD 62 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~------~~~--------~~~~~~v~q~~~---~~~v~~~i~~~~~-~~~~~~~ 62 (79)
++||.||||+||||++|+|+.++.|+. .++ .+.++.++.+.. -++..+|+..... ......+
T Consensus 30 i~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~ 109 (245)
T COG4555 30 ITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKE 109 (245)
T ss_pred EEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhH
Confidence 478999999999999999999999982 122 235777775543 3688888877543 2334444
Q ss_pred HHHHHHHHHHHHh
Q 044571 63 EKERADRLRLMFS 75 (79)
Q Consensus 63 ~~~~~~~l~~~l~ 75 (79)
.+.+.+++.+.|.
T Consensus 110 ~kari~~l~k~l~ 122 (245)
T COG4555 110 IKARIAELSKRLQ 122 (245)
T ss_pred HHHHHHHHHHHhC
Confidence 4455555555554
No 129
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.57 E-value=7.5e-15 Score=87.64 Aligned_cols=75 Identities=24% Similarity=0.231 Sum_probs=50.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc---------------EEEEEecCCcc--H---HHHHHHHHHHhcC-
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE---------------VGIATVSQDPD--I---IKVQGELAKSLGW- 56 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~---------------~~~~~v~q~~~--~---~~v~~~i~~~~~~- 56 (79)
+++|+|+||||||||+++|+|+++|+. .+++ ..++|+||++. + .++.+++...+..
T Consensus 352 ~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~ 431 (623)
T PRK10261 352 TLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVH 431 (623)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHc
Confidence 479999999999999999999998762 1211 25899999962 2 4788888765422
Q ss_pred CC-ChhhHHHHHHHHHHHHh
Q 044571 57 AL-NEKDEKERADRLRLMFS 75 (79)
Q Consensus 57 ~~-~~~~~~~~~~~l~~~l~ 75 (79)
.. ......+++.++++.++
T Consensus 432 ~~~~~~~~~~~~~~~L~~~g 451 (623)
T PRK10261 432 GLLPGKAAAARVAWLLERVG 451 (623)
T ss_pred CCCCHHHHHHHHHHHHHHcC
Confidence 11 12223345666666654
No 130
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.57 E-value=1.4e-14 Score=76.41 Aligned_cols=53 Identities=17% Similarity=0.304 Sum_probs=39.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-----------EEEEEecCCccH---HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-----------VGIATVSQDPDI---IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-----------~~~~~v~q~~~~---~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+.+|+. .+++ ..+++++|++.. .++.+++...
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~ 98 (204)
T PRK13538 29 LVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFY 98 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHH
Confidence 478999999999999999999998872 2222 247888887633 4777777554
No 131
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.57 E-value=2.5e-14 Score=87.84 Aligned_cols=78 Identities=33% Similarity=0.492 Sum_probs=65.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhc-ccCCCCcEEEEEecCCccHHHHHHHHHHHhcC---CCChhhHHHHHHHHHHHHh-
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLR-QEKIFDEVGIATVSQDPDIIKVQGELAKSLGW---ALNEKDEKERADRLRLMFS- 75 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~-~~~~~~~~~~~~v~q~~~~~~v~~~i~~~~~~---~~~~~~~~~~~~~l~~~l~- 75 (79)
+++|+|+.|.|||||++.+++... ....|+...|++|+|++....+++.|+..+.. ........+++..+.+.|.
T Consensus 181 iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~ 260 (889)
T KOG4658|consen 181 IVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEG 260 (889)
T ss_pred EEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhcc
Confidence 479999999999999999999988 77899999999999999999999999997764 2333334567778888887
Q ss_pred hhc
Q 044571 76 ERY 78 (79)
Q Consensus 76 ~~~ 78 (79)
+||
T Consensus 261 krf 263 (889)
T KOG4658|consen 261 KRF 263 (889)
T ss_pred Cce
Confidence 665
No 132
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=1.1e-14 Score=79.59 Aligned_cols=75 Identities=23% Similarity=0.300 Sum_probs=48.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC------------cEEEEEecCCcc----HHHHHHHHHHHhcC-CCCh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD------------EVGIATVSQDPD----IIKVQGELAKSLGW-ALNE 60 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~------------~~~~~~v~q~~~----~~~v~~~i~~~~~~-~~~~ 60 (79)
+++|+|+||||||||+++|+|+.+|+. .++ ...++|++|++. ..++.+++...... ....
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~ 116 (271)
T PRK13632 37 YVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPP 116 (271)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCH
Confidence 478999999999999999999998762 111 124789999863 24788887654321 1222
Q ss_pred hhHHHHHHHHHHHHh
Q 044571 61 KDEKERADRLRLMFS 75 (79)
Q Consensus 61 ~~~~~~~~~l~~~l~ 75 (79)
....+.+.++++.++
T Consensus 117 ~~~~~~~~~~l~~~~ 131 (271)
T PRK13632 117 KKMKDIIDDLAKKVG 131 (271)
T ss_pred HHHHHHHHHHHHHcC
Confidence 222334555655554
No 133
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.57 E-value=8e-15 Score=85.99 Aligned_cols=75 Identities=24% Similarity=0.305 Sum_probs=48.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CC--C-----------------cEEEEEecCCccH---HHHHHHHHHHhc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IF--D-----------------EVGIATVSQDPDI---IKVQGELAKSLG 55 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~--~-----------------~~~~~~v~q~~~~---~~v~~~i~~~~~ 55 (79)
+++|+|+||||||||+++|+|+++|+. .+ . ...++|++|++.. .++.+++...+.
T Consensus 312 ~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~ 391 (520)
T TIGR03269 312 IFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIG 391 (520)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHH
Confidence 479999999999999999999998762 22 1 1237899998643 578888765432
Q ss_pred CCCChhhHHHHHHHHHHHHh
Q 044571 56 WALNEKDEKERADRLRLMFS 75 (79)
Q Consensus 56 ~~~~~~~~~~~~~~l~~~l~ 75 (79)
.........+.+.++++.++
T Consensus 392 ~~~~~~~~~~~~~~~l~~~~ 411 (520)
T TIGR03269 392 LELPDELARMKAVITLKMVG 411 (520)
T ss_pred cCCCHHHHHHHHHHHHHhCC
Confidence 21122222234555665554
No 134
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.57 E-value=3.6e-15 Score=80.63 Aligned_cols=51 Identities=20% Similarity=0.259 Sum_probs=40.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCcEEEEEecCCccH---HHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDEVGIATVSQDPDI---IKVQGELA 51 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~~~~~~v~q~~~~---~~v~~~i~ 51 (79)
+++|+|+||||||||+++|+|+++|+. .+++..++|++|++.. .++.+++.
T Consensus 27 ~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~ 83 (246)
T cd03237 27 VIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLS 83 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHH
Confidence 478999999999999999999998873 3455678999998642 46666654
No 135
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.57 E-value=1.2e-14 Score=74.28 Aligned_cols=77 Identities=23% Similarity=0.246 Sum_probs=56.8
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhccc--------CCCCc-------------EEEEEecCCcc---HHHHHHHHHHHhc--
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQE--------KIFDE-------------VGIATVSQDPD---IIKVQGELAKSLG-- 55 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~--------~~~~~-------------~~~~~v~q~~~---~~~v~~~i~~~~~-- 55 (79)
+.+.||||+|||||+|.++-+.-|. ..|+- +.+++|||.++ .+++.+|+.+.-.
T Consensus 31 lvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv 110 (242)
T COG4161 31 LVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRV 110 (242)
T ss_pred EEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHH
Confidence 5688999999999999998887665 13331 36899999984 4899999887542
Q ss_pred CCCChhhHHHHHHHHHHHHh-hhc
Q 044571 56 WALNEKDEKERADRLRLMFS-ERY 78 (79)
Q Consensus 56 ~~~~~~~~~~~~~~l~~~l~-~~~ 78 (79)
.+.++.+...++.++++.|+ +.|
T Consensus 111 ~gl~~~qa~~~a~ellkrlrl~~~ 134 (242)
T COG4161 111 LGLSKDQALARAEKLLKRLRLKPY 134 (242)
T ss_pred hCCCHHHHHHHHHHHHHHhccccc
Confidence 24455555667888888887 544
No 136
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.57 E-value=1.9e-14 Score=76.68 Aligned_cols=75 Identities=21% Similarity=0.243 Sum_probs=49.5
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc---------------EEEEEecCCccH---HHHHHHHHHHhcCC--
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE---------------VGIATVSQDPDI---IKVQGELAKSLGWA-- 57 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~---------------~~~~~v~q~~~~---~~v~~~i~~~~~~~-- 57 (79)
+++|+|+||+|||||+++|.|.++|+. .+++ ..++|++|++.. .++.+++.......
T Consensus 33 ~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~ 112 (220)
T TIGR02982 33 IVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPN 112 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccC
Confidence 478999999999999999999988762 1211 358999999743 47777776543221
Q ss_pred CChhhHHHHHHHHHHHHh
Q 044571 58 LNEKDEKERADRLRLMFS 75 (79)
Q Consensus 58 ~~~~~~~~~~~~l~~~l~ 75 (79)
....+..+.+.++++.++
T Consensus 113 ~~~~~~~~~~~~~l~~~~ 130 (220)
T TIGR02982 113 LSYQEARERARAMLEAVG 130 (220)
T ss_pred CCHHHHHHHHHHHHHHcC
Confidence 122223335566666554
No 137
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=1.8e-14 Score=79.00 Aligned_cols=75 Identities=23% Similarity=0.253 Sum_probs=48.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCcc--H--HHHHHHHHHHhc-CCCCh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPD--I--IKVQGELAKSLG-WALNE 60 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~--~--~~v~~~i~~~~~-~~~~~ 60 (79)
+++|+|+||+|||||+++|+|+.+|+. .+++ ..++|++|++. . .++.+++..... .....
T Consensus 32 ~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~ 111 (277)
T PRK13652 32 RIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDE 111 (277)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcCCCH
Confidence 478999999999999999999998872 1222 24799999863 2 477777754322 12222
Q ss_pred hhHHHHHHHHHHHHh
Q 044571 61 KDEKERADRLRLMFS 75 (79)
Q Consensus 61 ~~~~~~~~~l~~~l~ 75 (79)
....+.+.++++.++
T Consensus 112 ~~~~~~~~~~l~~~~ 126 (277)
T PRK13652 112 ETVAHRVSSALHMLG 126 (277)
T ss_pred HHHHHHHHHHHHHCC
Confidence 223334556666544
No 138
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.57 E-value=1.1e-14 Score=81.40 Aligned_cols=72 Identities=24% Similarity=0.250 Sum_probs=48.9
Q ss_pred EEcCCCCcHHHHHHHHHhhhcccC---CCCc----------EEEEEecCCccH---HHHHHHHHHHhcC-CCChhhHHHH
Q 044571 4 LYGISCVGKTTLANFVGNQLRQEK---IFDE----------VGIATVSQDPDI---IKVQGELAKSLGW-ALNEKDEKER 66 (79)
Q Consensus 4 i~G~~G~GKstl~~~i~g~~~~~~---~~~~----------~~~~~v~q~~~~---~~v~~~i~~~~~~-~~~~~~~~~~ 66 (79)
|+|+||||||||+++|+|+.+|+. .+++ +.++|+||++.. .++.+|+...+.. .....+..++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 689999999999999999998862 2222 358999999743 5788888765432 1222223345
Q ss_pred HHHHHHHHh
Q 044571 67 ADRLRLMFS 75 (79)
Q Consensus 67 ~~~l~~~l~ 75 (79)
+.++++.++
T Consensus 81 ~~~~l~~~~ 89 (325)
T TIGR01187 81 VLEALRLVQ 89 (325)
T ss_pred HHHHHHHcC
Confidence 566666654
No 139
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.56 E-value=1.5e-14 Score=78.18 Aligned_cols=75 Identities=19% Similarity=0.134 Sum_probs=48.0
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC--------------------cEEEEEecCCccH---HHHHHHHHHHh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD--------------------EVGIATVSQDPDI---IKVQGELAKSL 54 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~--------------------~~~~~~v~q~~~~---~~v~~~i~~~~ 54 (79)
+++|+|+||||||||+++|.|+.+|+. .++ ...++|++|++.. .++.+++....
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 110 (250)
T PRK11264 31 VVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGP 110 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHH
Confidence 478999999999999999999988762 111 1257899998743 47778876432
Q ss_pred c--CCCChhhHHHHHHHHHHHHh
Q 044571 55 G--WALNEKDEKERADRLRLMFS 75 (79)
Q Consensus 55 ~--~~~~~~~~~~~~~~l~~~l~ 75 (79)
. .........+.+.++++.++
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~g 133 (250)
T PRK11264 111 VIVKGEPKEEATARARELLAKVG 133 (250)
T ss_pred HHhcCCCHHHHHHHHHHHHHHcC
Confidence 1 11122222334555655554
No 140
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=1.5e-14 Score=79.22 Aligned_cols=75 Identities=21% Similarity=0.275 Sum_probs=48.5
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc--------------EEEEEecCCcc--H--HHHHHHHHHHhc-CCC
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE--------------VGIATVSQDPD--I--IKVQGELAKSLG-WAL 58 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~--------------~~~~~v~q~~~--~--~~v~~~i~~~~~-~~~ 58 (79)
+++|+|+||||||||+++|+|+.++.. .+++ ..++|++|++. . .++.+++..... ...
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~ 109 (275)
T PRK13639 30 MVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGL 109 (275)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCC
Confidence 479999999999999999999998762 1111 24789999962 1 377777754321 122
Q ss_pred ChhhHHHHHHHHHHHHh
Q 044571 59 NEKDEKERADRLRLMFS 75 (79)
Q Consensus 59 ~~~~~~~~~~~l~~~l~ 75 (79)
......+.+.++++.++
T Consensus 110 ~~~~~~~~~~~~l~~~~ 126 (275)
T PRK13639 110 SKEEVEKRVKEALKAVG 126 (275)
T ss_pred CHHHHHHHHHHHHHHCC
Confidence 22223345556666554
No 141
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.56 E-value=2.2e-14 Score=77.71 Aligned_cols=52 Identities=19% Similarity=0.176 Sum_probs=39.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC-------------------------cEEEEEecCCccH---HHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD-------------------------EVGIATVSQDPDI---IKVQGE 49 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~-------------------------~~~~~~v~q~~~~---~~v~~~ 49 (79)
+++|+|+||||||||+++|+|+.+|+. .++ ...+++++|++.. .++.++
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~n 107 (252)
T TIGR03005 28 KVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDN 107 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHH
Confidence 478999999999999999999988761 111 1357899998743 477788
Q ss_pred HHH
Q 044571 50 LAK 52 (79)
Q Consensus 50 i~~ 52 (79)
+..
T Consensus 108 l~~ 110 (252)
T TIGR03005 108 VTE 110 (252)
T ss_pred HHH
Confidence 765
No 142
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.56 E-value=7.3e-15 Score=86.98 Aligned_cols=51 Identities=27% Similarity=0.361 Sum_probs=41.1
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH--HHHHHHHHH
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI--IKVQGELAK 52 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~--~~v~~~i~~ 52 (79)
++|+|+||||||||+++|.|+++|+. .+++ ..++|++|++.+ .++.+|+..
T Consensus 372 ~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~ 439 (582)
T PRK11176 372 VALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAY 439 (582)
T ss_pred EEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhc
Confidence 78999999999999999999999872 2332 358999999865 477777753
No 143
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=2e-14 Score=78.94 Aligned_cols=52 Identities=19% Similarity=0.255 Sum_probs=38.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc----------------EEEEEecCCcc--H--HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE----------------VGIATVSQDPD--I--IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~----------------~~~~~v~q~~~--~--~~v~~~i~~ 52 (79)
+++|+|+||||||||+++|+|+++|+. .+++ ..++|++|++. . .++.+++..
T Consensus 35 ~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~ 109 (280)
T PRK13649 35 YTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAF 109 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHHHHHHH
Confidence 478999999999999999999988762 1111 24789999852 2 367777754
No 144
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.56 E-value=2.7e-14 Score=77.58 Aligned_cols=75 Identities=16% Similarity=0.248 Sum_probs=48.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC-------------------------cEEEEEecCCccH---HHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD-------------------------EVGIATVSQDPDI---IKVQGE 49 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~-------------------------~~~~~~v~q~~~~---~~v~~~ 49 (79)
+++|+|+||+|||||+++|.|+.+|+. .++ ...++|++|++.. .++.++
T Consensus 33 ~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~en 112 (257)
T PRK10619 33 VISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLEN 112 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHH
Confidence 478999999999999999999998762 111 1358999999744 477888
Q ss_pred HHHHh-c-CCCChhhHHHHHHHHHHHHh
Q 044571 50 LAKSL-G-WALNEKDEKERADRLRLMFS 75 (79)
Q Consensus 50 i~~~~-~-~~~~~~~~~~~~~~l~~~l~ 75 (79)
+.... . .........+.+.++++.++
T Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~l~~~g 140 (257)
T PRK10619 113 VMEAPIQVLGLSKQEARERAVKYLAKVG 140 (257)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcC
Confidence 75422 1 11122222334555666554
No 145
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=3.1e-14 Score=77.81 Aligned_cols=52 Identities=27% Similarity=0.307 Sum_probs=37.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhc-----ccC---CCCc--------------EEEEEecCCccH--HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLR-----QEK---IFDE--------------VGIATVSQDPDI--IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~-----~~~---~~~~--------------~~~~~v~q~~~~--~~v~~~i~~ 52 (79)
+++|+|+||||||||+++|+|+++ |+. .+++ ..++|++|++.. .++.+++..
T Consensus 41 ~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~ 116 (269)
T PRK14259 41 VTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAF 116 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccchhhHHHHHhh
Confidence 478999999999999999999976 231 1111 248999999743 366777654
No 146
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=2.3e-14 Score=77.71 Aligned_cols=53 Identities=21% Similarity=0.295 Sum_probs=40.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-------------EEEEEecCCccH---HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-------------VGIATVSQDPDI---IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-------------~~~~~v~q~~~~---~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+.+|+. .+++ ..++|+||++.. .++.+++...
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~ 104 (255)
T PRK11300 33 IVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVA 104 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHh
Confidence 478999999999999999999998862 1111 237889998743 5788887653
No 147
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.56 E-value=4.4e-15 Score=75.05 Aligned_cols=73 Identities=22% Similarity=0.183 Sum_probs=50.4
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccCCCC----------------cEEEEEecCCc---cHHHHHHHHHHHhcCCCChh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEKIFD----------------EVGIATVSQDP---DIIKVQGELAKSLGWALNEK 61 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~~~~----------------~~~~~~v~q~~---~~~~v~~~i~~~~~~~~~~~ 61 (79)
++.++||||||||||+..+.|.+.+...+. .+.++++|||+ +..++.+|+...+....+..
T Consensus 30 ivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~ 109 (213)
T COG4136 30 IVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGN 109 (213)
T ss_pred EEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEecCcccccH
Confidence 467899999999999999999988762222 24689999996 55788888877665443333
Q ss_pred hHHHHHHHHHHH
Q 044571 62 DEKERADRLRLM 73 (79)
Q Consensus 62 ~~~~~~~~l~~~ 73 (79)
.....+...++.
T Consensus 110 aRr~~a~aAL~~ 121 (213)
T COG4136 110 ARRNAANAALER 121 (213)
T ss_pred HHHhhHHHHHHH
Confidence 333333344433
No 148
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=2.3e-14 Score=77.23 Aligned_cols=51 Identities=24% Similarity=0.380 Sum_probs=38.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH--HHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI--IKVQGELA 51 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~--~~v~~~i~ 51 (79)
+++|+|+||||||||+++|+|+.+|+. .+++ ..++|++|++.. .++.+++.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~ 98 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIE 98 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHHh
Confidence 478999999999999999999988762 1221 357899999754 35555544
No 149
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=2.1e-14 Score=78.33 Aligned_cols=53 Identities=25% Similarity=0.377 Sum_probs=40.0
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH---HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI---IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~---~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+.+|+. .+++ ..++|++|++.. .++.+++...
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 109 (265)
T PRK10575 39 VTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIG 109 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhC
Confidence 478999999999999999999988762 1222 247899998533 4777777643
No 150
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=2.7e-14 Score=79.75 Aligned_cols=75 Identities=15% Similarity=0.150 Sum_probs=48.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC----------------------------cEEEEEecCCcc--H--HH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD----------------------------EVGIATVSQDPD--I--IK 45 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~----------------------------~~~~~~v~q~~~--~--~~ 45 (79)
+++|+|+||||||||+++|+|+++|+. .++ ...++++||++. . .+
T Consensus 54 ~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~t 133 (320)
T PRK13631 54 IYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDT 133 (320)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhccccch
Confidence 479999999999999999999998862 111 124789999873 2 36
Q ss_pred HHHHHHHHhc-CCCChhhHHHHHHHHHHHHh
Q 044571 46 VQGELAKSLG-WALNEKDEKERADRLRLMFS 75 (79)
Q Consensus 46 v~~~i~~~~~-~~~~~~~~~~~~~~l~~~l~ 75 (79)
+.+++..... ......+..+++.++++.++
T Consensus 134 v~eni~~~~~~~~~~~~~~~~~~~~~l~~~g 164 (320)
T PRK13631 134 IEKDIMFGPVALGVKKSEAKKLAKFYLNKMG 164 (320)
T ss_pred HHHHHHhhHHhcCCCHHHHHHHHHHHHHHcC
Confidence 7777754321 12222223345556666554
No 151
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=8.8e-15 Score=85.59 Aligned_cols=75 Identities=21% Similarity=0.294 Sum_probs=49.4
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc--cC---CCCc-------------EEEEEecCCccH---HHHHHHHHHHhcCC--
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ--EK---IFDE-------------VGIATVSQDPDI---IKVQGELAKSLGWA-- 57 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~--~~---~~~~-------------~~~~~v~q~~~~---~~v~~~i~~~~~~~-- 57 (79)
+++|+||||||||||+++|+|+++| +. .+++ ..++|++|++.. .++.+++.......
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~ 112 (506)
T PRK13549 33 IVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPG 112 (506)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhccccccc
Confidence 4789999999999999999999986 31 1221 248999998633 57888876543211
Q ss_pred --CChhhHHHHHHHHHHHHh
Q 044571 58 --LNEKDEKERADRLRLMFS 75 (79)
Q Consensus 58 --~~~~~~~~~~~~l~~~l~ 75 (79)
.......+.+.++++.++
T Consensus 113 ~~~~~~~~~~~~~~~l~~~~ 132 (506)
T PRK13549 113 GIMDYDAMYLRAQKLLAQLK 132 (506)
T ss_pred CCcCHHHHHHHHHHHHHHcC
Confidence 112222345566666655
No 152
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=2.4e-14 Score=77.67 Aligned_cols=52 Identities=23% Similarity=0.285 Sum_probs=39.4
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH---HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI---IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~---~~v~~~i~~ 52 (79)
+++|+|+||||||||+++|+|+++|+. .+++ ..++|++|++.. .++.+++..
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~ 99 (255)
T PRK11231 30 ITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAY 99 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHh
Confidence 478999999999999999999988762 1211 248999998643 367777654
No 153
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.55 E-value=2.7e-14 Score=75.02 Aligned_cols=53 Identities=21% Similarity=0.270 Sum_probs=39.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-----------EEEEEecCCccH---HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-----------VGIATVSQDPDI---IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-----------~~~~~v~q~~~~---~~v~~~i~~~ 53 (79)
+++|+|+||+|||||+++|+|+++|+. .+++ ..++|++|++.. .++.+++...
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 97 (198)
T TIGR01189 28 ALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFW 97 (198)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHH
Confidence 478999999999999999999988762 1221 357899998633 4677776543
No 154
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.55 E-value=1.8e-14 Score=78.29 Aligned_cols=26 Identities=38% Similarity=0.496 Sum_probs=24.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
+++|+|+||||||||+++|+|+++|+
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl~~p~ 59 (258)
T PRK11701 34 VLGIVGESGSGKTTLLNALSARLAPD 59 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 47899999999999999999999876
No 155
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=2.7e-14 Score=77.26 Aligned_cols=53 Identities=23% Similarity=0.273 Sum_probs=39.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc-----cC---CCCc------------EEEEEecCCccH---HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ-----EK---IFDE------------VGIATVSQDPDI---IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~-----~~---~~~~------------~~~~~v~q~~~~---~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|.|+.++ +. .+++ ..++|++|++.. .++.+++...
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~ 106 (250)
T PRK14247 31 ITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALG 106 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHH
Confidence 4789999999999999999999864 21 1221 358899999743 5788887654
No 156
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.55 E-value=3e-14 Score=77.74 Aligned_cols=53 Identities=26% Similarity=0.325 Sum_probs=39.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC---------------cEEEEEecCCcc-----HHHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD---------------EVGIATVSQDPD-----IIKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~---------------~~~~~~v~q~~~-----~~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+++|+. .++ ...++|++|++. ..++.+++...
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 114 (265)
T TIGR02769 39 TVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEP 114 (265)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHH
Confidence 478999999999999999999998862 111 125899999852 24677776543
No 157
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.55 E-value=9.3e-15 Score=75.04 Aligned_cols=51 Identities=18% Similarity=0.117 Sum_probs=39.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-EEEEEecCCccH--HHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-VGIATVSQDPDI--IKVQGELA 51 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-~~~~~v~q~~~~--~~v~~~i~ 51 (79)
+++|+|+||||||||+++|+|+++++. .++. ..++|++|++.. .++.+++.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~ 85 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLI 85 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhh
Confidence 378999999999999999999998863 2332 568999999743 36667764
No 158
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.55 E-value=3.1e-14 Score=77.38 Aligned_cols=54 Identities=20% Similarity=0.320 Sum_probs=39.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc-----cC---CCCc--------------EEEEEecCCccH---HHHHHHHHHHh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ-----EK---IFDE--------------VGIATVSQDPDI---IKVQGELAKSL 54 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~-----~~---~~~~--------------~~~~~v~q~~~~---~~v~~~i~~~~ 54 (79)
+++|+|+||||||||+++|+|+.+| +. .+++ ..+++++|++.. .++.+++....
T Consensus 32 ~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~ 110 (258)
T PRK14241 32 VTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGL 110 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHH
Confidence 4789999999999999999999863 21 1111 248899998643 57888876543
No 159
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.55 E-value=8.9e-15 Score=86.39 Aligned_cols=52 Identities=17% Similarity=0.326 Sum_probs=40.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC-cEEEEEecCCccH---HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD-EVGIATVSQDPDI---IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~-~~~~~~v~q~~~~---~~v~~~i~~ 52 (79)
+++|+||||||||||+++|+|+++|+. .++ ...++|++|++.. .++.+++..
T Consensus 35 ~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~ 93 (556)
T PRK11819 35 KIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEE 93 (556)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCcHHHHHHH
Confidence 478999999999999999999998863 122 3468999999743 477777754
No 160
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.55 E-value=1.5e-14 Score=83.89 Aligned_cols=75 Identities=24% Similarity=0.347 Sum_probs=53.0
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCcE-------------EEEEecCCccH---HHHHHHHHHHhcCC----
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDEV-------------GIATVSQDPDI---IKVQGELAKSLGWA---- 57 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~~-------------~~~~v~q~~~~---~~v~~~i~~~~~~~---- 57 (79)
+++++|+||+|||||+|+|+|.++|+. .+++. .+..|+|+.++ +++.+||...-...
T Consensus 36 V~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g 115 (500)
T COG1129 36 VHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFG 115 (500)
T ss_pred EEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCC
Confidence 478999999999999999999999983 23332 48899999854 78999987433211
Q ss_pred -CChhhHHHHHHHHHHHHh
Q 044571 58 -LNEKDEKERADRLRLMFS 75 (79)
Q Consensus 58 -~~~~~~~~~~~~l~~~l~ 75 (79)
.+.....+.+.++++.++
T Consensus 116 ~id~~~m~~~A~~~l~~lg 134 (500)
T COG1129 116 LIDRKAMRRRARELLARLG 134 (500)
T ss_pred ccCHHHHHHHHHHHHHHcC
Confidence 122334456666666553
No 161
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=3.7e-14 Score=78.17 Aligned_cols=52 Identities=21% Similarity=0.322 Sum_probs=38.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC-----------------cEEEEEecCCcc--H--HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD-----------------EVGIATVSQDPD--I--IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~-----------------~~~~~~v~q~~~--~--~~v~~~i~~ 52 (79)
+++|+|+||||||||+++|+|+++|+. .++ ...++|++|++. . .++.+++..
T Consensus 39 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~ 114 (289)
T PRK13645 39 VTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAF 114 (289)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHH
Confidence 478999999999999999999998762 111 124789999862 1 367777654
No 162
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.55 E-value=1.6e-14 Score=84.60 Aligned_cols=72 Identities=19% Similarity=0.317 Sum_probs=47.4
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-------------EEEEEecCCccH---HHHHHHHHHHhcCCCChh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-------------VGIATVSQDPDI---IKVQGELAKSLGWALNEK 61 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-------------~~~~~v~q~~~~---~~v~~~i~~~~~~~~~~~ 61 (79)
+++|+||||||||||+++|+|+++|+. .+++ ..++|++|++.. .++.+++...... ..
T Consensus 39 ~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~---~~ 115 (510)
T PRK15439 39 VHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK---RQ 115 (510)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc---ch
Confidence 479999999999999999999998862 1221 247899999643 4677776543211 11
Q ss_pred hHHHHHHHHHHHHh
Q 044571 62 DEKERADRLRLMFS 75 (79)
Q Consensus 62 ~~~~~~~~l~~~l~ 75 (79)
...+++.++++.++
T Consensus 116 ~~~~~~~~~l~~~~ 129 (510)
T PRK15439 116 ASMQKMKQLLAALG 129 (510)
T ss_pred HHHHHHHHHHHHcC
Confidence 22234455555544
No 163
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.54 E-value=4.3e-14 Score=75.65 Aligned_cols=53 Identities=32% Similarity=0.402 Sum_probs=40.4
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC-------------cEEEEEecCCccH---HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD-------------EVGIATVSQDPDI---IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~-------------~~~~~~v~q~~~~---~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+++|.. .++ ...++|++|++.. .++.+++...
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 99 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTG 99 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHH
Confidence 478999999999999999999998862 111 1358899999743 4777777654
No 164
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.54 E-value=1.4e-14 Score=87.21 Aligned_cols=52 Identities=23% Similarity=0.316 Sum_probs=41.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH--HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI--IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~--~~v~~~i~~ 52 (79)
++||+|+||||||||+|++.|++.|+. .+++ +.+++|+||+-+ -++.+|+..
T Consensus 501 ~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l 569 (709)
T COG2274 501 KVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIAL 569 (709)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhc
Confidence 479999999999999999999999972 3333 369999999865 367777753
No 165
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=2.6e-14 Score=78.42 Aligned_cols=75 Identities=21% Similarity=0.298 Sum_probs=48.4
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCcc--H--HHHHHHHHHHhcC-CCCh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPD--I--IKVQGELAKSLGW-ALNE 60 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~--~--~~v~~~i~~~~~~-~~~~ 60 (79)
+++|+|+||+|||||+++|+|+.+|+. .+++ ..++|++|++. . .++.+++...... ....
T Consensus 35 ~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~ 114 (277)
T PRK13642 35 WVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPR 114 (277)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCH
Confidence 479999999999999999999998862 1221 24799999863 2 4777887643321 1222
Q ss_pred hhHHHHHHHHHHHHh
Q 044571 61 KDEKERADRLRLMFS 75 (79)
Q Consensus 61 ~~~~~~~~~l~~~l~ 75 (79)
....+.+..+++.++
T Consensus 115 ~~~~~~~~~~l~~~~ 129 (277)
T PRK13642 115 EEMIKRVDEALLAVN 129 (277)
T ss_pred HHHHHHHHHHHHHCC
Confidence 222234455555443
No 166
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.54 E-value=3.1e-14 Score=75.59 Aligned_cols=53 Identities=23% Similarity=0.177 Sum_probs=39.5
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc---------EEEEEecCCccH---HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE---------VGIATVSQDPDI---IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~---------~~~~~v~q~~~~---~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+++|+. .+++ ..++|++|++.. .++.+++...
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~ 106 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFL 106 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHH
Confidence 378999999999999999999998862 2222 237899998643 3677776543
No 167
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.54 E-value=2.7e-14 Score=77.90 Aligned_cols=52 Identities=23% Similarity=0.328 Sum_probs=39.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH---HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI---IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~---~~v~~~i~~ 52 (79)
+++|+|+||||||||+++|+|+.+++. .+++ ..++|+||++.. .++.+++..
T Consensus 35 ~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~ 104 (265)
T PRK10253 35 FTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVAR 104 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHh
Confidence 478999999999999999999998762 2222 247999999743 467777654
No 168
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.54 E-value=2.6e-14 Score=86.23 Aligned_cols=51 Identities=24% Similarity=0.312 Sum_probs=41.1
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH--HHHHHHHHH
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI--IKVQGELAK 52 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~--~~v~~~i~~ 52 (79)
++|+|+||||||||+++|.|+++|+. .+++ ..++||+|++.+ .++.+|+..
T Consensus 503 vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l 570 (708)
T TIGR01193 503 TTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLL 570 (708)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhc
Confidence 79999999999999999999999872 2332 368999999866 367777754
No 169
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.54 E-value=1.5e-15 Score=77.74 Aligned_cols=53 Identities=23% Similarity=0.355 Sum_probs=41.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCcE------------EEEEecCCccH--HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDEV------------GIATVSQDPDI--IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~~------------~~~~v~q~~~~--~~v~~~i~~~ 53 (79)
+++|+||||||||||+|+++.+++|+. .|.+. .++|+.|.|.+ .++.+|+...
T Consensus 31 ~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP 100 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFP 100 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccc
Confidence 478999999999999999999999983 34432 46788888876 3777777654
No 170
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=2.9e-14 Score=78.35 Aligned_cols=75 Identities=21% Similarity=0.221 Sum_probs=47.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC-------------cEEEEEecCCccH----HHHHHHHHHHhcC-CCC
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD-------------EVGIATVSQDPDI----IKVQGELAKSLGW-ALN 59 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~-------------~~~~~~v~q~~~~----~~v~~~i~~~~~~-~~~ 59 (79)
+++|+|+||||||||+++|.|+++|+. .++ .+.++|+||++.. .++.+++...... ...
T Consensus 38 ~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~ 117 (280)
T PRK13633 38 FLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIP 117 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCC
Confidence 478999999999999999999998862 111 1257899998732 2456666443221 122
Q ss_pred hhhHHHHHHHHHHHHh
Q 044571 60 EKDEKERADRLRLMFS 75 (79)
Q Consensus 60 ~~~~~~~~~~l~~~l~ 75 (79)
..+..+.+.++++.++
T Consensus 118 ~~~~~~~~~~~l~~~g 133 (280)
T PRK13633 118 PEEIRERVDESLKKVG 133 (280)
T ss_pred HHHHHHHHHHHHHHCC
Confidence 2223345566666554
No 171
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=2.6e-14 Score=80.04 Aligned_cols=75 Identities=23% Similarity=0.267 Sum_probs=48.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc----cC---CCCc----------------EEEEEecCCcc-----HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ----EK---IFDE----------------VGIATVSQDPD-----IIKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~----~~---~~~~----------------~~~~~v~q~~~-----~~~v~~~i~~ 52 (79)
+++|+|+||||||||+++|.|+.++ +. .|++ +.++||||++. ..++.+++.+
T Consensus 35 ~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~ 114 (330)
T PRK15093 35 IRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQ 114 (330)
T ss_pred EEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHH
Confidence 4799999999999999999999863 21 1221 25899999974 2467777765
Q ss_pred HhcC---CC---Ch-hhHHHHHHHHHHHHh
Q 044571 53 SLGW---AL---NE-KDEKERADRLRLMFS 75 (79)
Q Consensus 53 ~~~~---~~---~~-~~~~~~~~~l~~~l~ 75 (79)
.+.. .. .. ....+++.++++.++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g 144 (330)
T PRK15093 115 NIPGWTYKGRWWQRFGWRKRRAIELLHRVG 144 (330)
T ss_pred HHHhhhccccccccHHHHHHHHHHHHHHCC
Confidence 4321 00 11 122345666776665
No 172
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.54 E-value=1.6e-14 Score=85.70 Aligned_cols=52 Identities=27% Similarity=0.344 Sum_probs=41.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH--HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI--IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~--~~v~~~i~~ 52 (79)
.++|+|+||||||||+++|+|+++|+. .+++ ..++|++|++.+ .++.+|+..
T Consensus 369 ~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~ 437 (592)
T PRK10790 369 FVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTL 437 (592)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHh
Confidence 379999999999999999999999972 2332 358999999866 377777764
No 173
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.54 E-value=5.9e-16 Score=80.94 Aligned_cols=75 Identities=27% Similarity=0.431 Sum_probs=54.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-------------EEEEEecCCccH---HHHHHHHHHHhcCCCCh-
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-------------VGIATVSQDPDI---IKVQGELAKSLGWALNE- 60 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-------------~~~~~v~q~~~~---~~v~~~i~~~~~~~~~~- 60 (79)
++|+.||||+||||.+.++.|+.+|+. .++. ..++|++|+++. +++.+|++-.+.....+
T Consensus 32 iVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~ 111 (243)
T COG1137 32 IVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDL 111 (243)
T ss_pred EEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcch
Confidence 589999999999999999999999982 2222 258999999876 58999998776543322
Q ss_pred --hhHHHHHHHHHHHHh
Q 044571 61 --KDEKERADRLRLMFS 75 (79)
Q Consensus 61 --~~~~~~~~~l~~~l~ 75 (79)
.....+++.+++.+.
T Consensus 112 ~~~~~~~~l~~LL~ef~ 128 (243)
T COG1137 112 KKAERKEELDALLEEFH 128 (243)
T ss_pred hHHHHHHHHHHHHHHhc
Confidence 122235667777664
No 174
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.54 E-value=3.3e-14 Score=76.61 Aligned_cols=53 Identities=25% Similarity=0.458 Sum_probs=40.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC-------------cEEEEEecCCccH---HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD-------------EVGIATVSQDPDI---IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~-------------~~~~~~v~q~~~~---~~v~~~i~~~ 53 (79)
+++|+|+||+|||||+++|+|+.+|+. .++ ...++|++|++.. .++.+++...
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~ 101 (242)
T TIGR03411 30 LRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELA 101 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHh
Confidence 478999999999999999999988762 111 1248899998743 4778877653
No 175
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=3.8e-14 Score=76.87 Aligned_cols=53 Identities=21% Similarity=0.300 Sum_probs=39.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc------C--CCC--------------cEEEEEecCCccH--HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE------K--IFD--------------EVGIATVSQDPDI--IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~------~--~~~--------------~~~~~~v~q~~~~--~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|++++. . .++ ...++|++|++.. .++.+++...
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~ 111 (254)
T PRK14273 35 ITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYG 111 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccccCcHHHHHHHH
Confidence 47899999999999999999998762 1 111 1248999999744 5777877654
No 176
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.54 E-value=8.6e-15 Score=78.62 Aligned_cols=75 Identities=15% Similarity=0.208 Sum_probs=57.0
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC--------cEEEEEecCCcc---HHHHHHHHHHHhcC-CCChhhHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD--------EVGIATVSQDPD---IIKVQGELAKSLGW-ALNEKDEKE 65 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~--------~~~~~~v~q~~~---~~~v~~~i~~~~~~-~~~~~~~~~ 65 (79)
+.|++|+||+||||.+|+|.|+++|+. .++ ..+++|+|.+.. -+++.+++...... +.+..+...
T Consensus 30 i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~ 109 (300)
T COG4152 30 IFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQK 109 (300)
T ss_pred EEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHH
Confidence 468999999999999999999999972 122 236899999864 36888888776544 345555666
Q ss_pred HHHHHHHHHh
Q 044571 66 RADRLRLMFS 75 (79)
Q Consensus 66 ~~~~l~~~l~ 75 (79)
.+..+++++.
T Consensus 110 ~~~~wLer~~ 119 (300)
T COG4152 110 KLQAWLERLE 119 (300)
T ss_pred HHHHHHHhcc
Confidence 7888888875
No 177
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.53 E-value=4.2e-14 Score=75.54 Aligned_cols=54 Identities=37% Similarity=0.463 Sum_probs=40.4
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC---------------cEEEEEecCCcc-----HHHHHHHHHHHh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD---------------EVGIATVSQDPD-----IIKVQGELAKSL 54 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~---------------~~~~~~v~q~~~-----~~~v~~~i~~~~ 54 (79)
+++|+|+||||||||+++|+|+++|+. .++ ...++|++|++. ..++.+++....
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~ 109 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPL 109 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHH
Confidence 479999999999999999999998762 111 135889999972 247778876543
No 178
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.53 E-value=4.3e-14 Score=75.39 Aligned_cols=52 Identities=29% Similarity=0.493 Sum_probs=39.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc--------EEEEEecCCccH---HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE--------VGIATVSQDPDI---IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~--------~~~~~v~q~~~~---~~v~~~i~~ 52 (79)
+++|+|+||+|||||+++|+|+++|+. .+++ +.++++||++.. .++.+++..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~ 93 (223)
T TIGR03740 28 VYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKV 93 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHH
Confidence 478999999999999999999988762 1221 357899998643 467777754
No 179
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.53 E-value=5.1e-14 Score=76.64 Aligned_cols=53 Identities=21% Similarity=0.335 Sum_probs=38.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhc-----ccC---CCC--------------cEEEEEecCCccH--HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLR-----QEK---IFD--------------EVGIATVSQDPDI--IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~-----~~~---~~~--------------~~~~~~v~q~~~~--~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+.+ |+. .++ ...++|+||++.. .++.+++...
T Consensus 41 ~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~ 117 (260)
T PRK10744 41 VTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFG 117 (260)
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCcCcHHHHHhhh
Confidence 478999999999999999999985 221 111 1358899999643 4677777543
No 180
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.53 E-value=2.8e-14 Score=75.18 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=39.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC-----------cEEEEEecCCccH---HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD-----------EVGIATVSQDPDI---IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~-----------~~~~~~v~q~~~~---~~v~~~i~~ 52 (79)
+++|+|+||+|||||+++|+|+.+|+. .++ ...++|++|++.. .++.+++..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 96 (201)
T cd03231 28 ALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRF 96 (201)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHh
Confidence 479999999999999999999998762 111 1257899998643 467777654
No 181
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.53 E-value=4.4e-14 Score=77.21 Aligned_cols=75 Identities=20% Similarity=0.222 Sum_probs=46.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCcc-H---HHHHHHHHHHhcC-CCCh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPD-I---IKVQGELAKSLGW-ALNE 60 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~-~---~~v~~~i~~~~~~-~~~~ 60 (79)
+++|+||||||||||+++|+|+.+|+. .+++ ..++|++|++. . .++.+++...... ....
T Consensus 37 ~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~ 116 (269)
T PRK13648 37 WTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPY 116 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCH
Confidence 478999999999999999999998762 1221 24789999863 1 3456665443321 1122
Q ss_pred hhHHHHHHHHHHHHh
Q 044571 61 KDEKERADRLRLMFS 75 (79)
Q Consensus 61 ~~~~~~~~~l~~~l~ 75 (79)
....+.+.++++.++
T Consensus 117 ~~~~~~~~~~l~~~~ 131 (269)
T PRK13648 117 DEMHRRVSEALKQVD 131 (269)
T ss_pred HHHHHHHHHHHHHcC
Confidence 222334555555544
No 182
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.53 E-value=5.8e-14 Score=75.53 Aligned_cols=53 Identities=23% Similarity=0.304 Sum_probs=40.0
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC----------cEEEEEecCCccH---HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD----------EVGIATVSQDPDI---IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~----------~~~~~~v~q~~~~---~~v~~~i~~~ 53 (79)
+++|+|+||+|||||+++|+|+++++. .++ ...++|++|++.. .++.+++...
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~ 96 (237)
T TIGR00968 28 LVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFG 96 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhH
Confidence 478999999999999999999988762 121 1357899998744 3677777543
No 183
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=5.4e-14 Score=76.20 Aligned_cols=53 Identities=25% Similarity=0.232 Sum_probs=39.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc------cC--CCC--------------cEEEEEecCCccH---HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ------EK--IFD--------------EVGIATVSQDPDI---IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~------~~--~~~--------------~~~~~~v~q~~~~---~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|.|+++| .. .++ ...++|++|++.. .++.+++...
T Consensus 32 ~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~ 109 (253)
T PRK14267 32 VFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIG 109 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHH
Confidence 4789999999999999999999876 21 111 1247899999743 4788887654
No 184
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.53 E-value=5e-14 Score=76.49 Aligned_cols=52 Identities=31% Similarity=0.445 Sum_probs=39.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH---HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI---IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~---~~v~~~i~~ 52 (79)
+++|+|+||+|||||+++|.|+++|+. .+++ ..++|++|++.. .++.+++..
T Consensus 29 ~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 98 (256)
T TIGR03873 29 LTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVAL 98 (256)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHh
Confidence 478999999999999999999998762 1221 247899999743 467777754
No 185
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.53 E-value=2.7e-14 Score=83.46 Aligned_cols=53 Identities=21% Similarity=0.337 Sum_probs=40.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc--cC---CCCc-------------EEEEEecCCccH---HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ--EK---IFDE-------------VGIATVSQDPDI---IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~--~~---~~~~-------------~~~~~v~q~~~~---~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+.+| +. .+++ ..++|+||++.. .++.+++...
T Consensus 29 ~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~ 102 (500)
T TIGR02633 29 CVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLG 102 (500)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhh
Confidence 4799999999999999999999886 31 1221 248999998743 5777887654
No 186
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.52 E-value=3.2e-14 Score=85.87 Aligned_cols=50 Identities=32% Similarity=0.400 Sum_probs=40.6
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccHH--HHHHHHH
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDII--KVQGELA 51 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~~--~v~~~i~ 51 (79)
++|+|+||||||||+++|.|+++|+. .+++ ..++||+|++.+. ++.+|+.
T Consensus 508 vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~ 574 (710)
T TIGR03796 508 VALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLT 574 (710)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhh
Confidence 79999999999999999999999873 2332 3689999998663 6777775
No 187
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.52 E-value=7.7e-14 Score=76.21 Aligned_cols=53 Identities=19% Similarity=0.251 Sum_probs=39.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc-----cC---CCC--------------cEEEEEecCCccH--HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ-----EK---IFD--------------EVGIATVSQDPDI--IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~-----~~---~~~--------------~~~~~~v~q~~~~--~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+.+| +. .++ ...++|++|++.. .++.+++...
T Consensus 47 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~ 123 (267)
T PRK14235 47 VTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYG 123 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCCcHHHHHHHH
Confidence 4789999999999999999999864 31 111 1247899998743 3677777643
No 188
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.52 E-value=6.6e-14 Score=75.31 Aligned_cols=52 Identities=19% Similarity=0.149 Sum_probs=36.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-----------EEEEEecC-Cc---cHHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-----------VGIATVSQ-DP---DIIKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-----------~~~~~v~q-~~---~~~~v~~~i~~ 52 (79)
+++|+|+||||||||+++|+|+++|+. .+++ ..++|++| ++ +..++.+++..
T Consensus 49 ~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~ 118 (236)
T cd03267 49 IVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYL 118 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHH
Confidence 478999999999999999999988762 1211 24788874 33 22466666644
No 189
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.52 E-value=5.5e-14 Score=76.59 Aligned_cols=53 Identities=23% Similarity=0.215 Sum_probs=39.4
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc-----c-C--CCC--------------cEEEEEecCCccH--HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ-----E-K--IFD--------------EVGIATVSQDPDI--IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~-----~-~--~~~--------------~~~~~~v~q~~~~--~~v~~~i~~~ 53 (79)
+++|+|+||+|||||+++|.|+++| . . .++ ...++|++|++.. .++.+++...
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~ 112 (261)
T PRK14263 36 ITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFG 112 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccccccHHHHHHHH
Confidence 4789999999999999999999875 2 1 111 1248999999754 5677777544
No 190
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.52 E-value=9.1e-14 Score=74.72 Aligned_cols=53 Identities=28% Similarity=0.417 Sum_probs=40.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC-------------cEEEEEecCCccH---HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD-------------EVGIATVSQDPDI---IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~-------------~~~~~~v~q~~~~---~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|.|+.+|+. .++ ...++|++|++.. .++.+++...
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 104 (237)
T PRK11614 33 IVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMG 104 (237)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHh
Confidence 478999999999999999999998762 111 1248899998743 4677777653
No 191
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.52 E-value=2.7e-14 Score=75.45 Aligned_cols=56 Identities=18% Similarity=0.207 Sum_probs=41.0
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH---HHHHHHHHHHhcC
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI---IKVQGELAKSLGW 56 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~---~~v~~~i~~~~~~ 56 (79)
+.+|+||||+|||||+|.++|...|+. .+++ +..+.++|+..+ +++++-+......
T Consensus 29 v~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p 102 (259)
T COG4559 29 VLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIP 102 (259)
T ss_pred EEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhcccc
Confidence 478999999999999999999999873 2222 245778888644 4667666655443
No 192
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.52 E-value=2.2e-14 Score=84.69 Aligned_cols=52 Identities=17% Similarity=0.323 Sum_probs=40.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC-cEEEEEecCCccH---HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD-EVGIATVSQDPDI---IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~-~~~~~~v~q~~~~---~~v~~~i~~ 52 (79)
+++|+|+||||||||+++|+|+.+|+. .++ ...++|++|++.. .++.+++..
T Consensus 33 ~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~ 91 (552)
T TIGR03719 33 KIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEE 91 (552)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcHHHHHHH
Confidence 478999999999999999999998863 222 2468999999743 577777754
No 193
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.52 E-value=7.7e-14 Score=74.85 Aligned_cols=75 Identities=25% Similarity=0.266 Sum_probs=48.5
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC----------cEEEEEecCCccH---HHHHHHHHHHhcCC-CChhhH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD----------EVGIATVSQDPDI---IKVQGELAKSLGWA-LNEKDE 63 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~----------~~~~~~v~q~~~~---~~v~~~i~~~~~~~-~~~~~~ 63 (79)
+++|+|+||+|||||+++|+|..+|.. .++ ...+++++|++.. .++.+++....... ......
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~ 107 (232)
T cd03300 28 FFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEI 107 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcCCCHHHH
Confidence 478999999999999999999998862 122 1357899999744 47777765433211 112222
Q ss_pred HHHHHHHHHHHh
Q 044571 64 KERADRLRLMFS 75 (79)
Q Consensus 64 ~~~~~~l~~~l~ 75 (79)
.+.+..+++.++
T Consensus 108 ~~~~~~~l~~~~ 119 (232)
T cd03300 108 KERVAEALDLVQ 119 (232)
T ss_pred HHHHHHHHHHcC
Confidence 334455555544
No 194
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.52 E-value=6.8e-14 Score=75.21 Aligned_cols=75 Identities=16% Similarity=0.266 Sum_probs=48.5
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC----------cEEEEEecCCccH---HHHHHHHHHHhcCC-CChhhH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD----------EVGIATVSQDPDI---IKVQGELAKSLGWA-LNEKDE 63 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~----------~~~~~~v~q~~~~---~~v~~~i~~~~~~~-~~~~~~ 63 (79)
+++|+|+||+|||||+++|+|+.+|+. .++ ...+++++|++.. .++.+++....... ......
T Consensus 27 ~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~ 106 (235)
T cd03299 27 YFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEI 106 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHHH
Confidence 378999999999999999999988872 121 1358999998643 47777776433211 122223
Q ss_pred HHHHHHHHHHHh
Q 044571 64 KERADRLRLMFS 75 (79)
Q Consensus 64 ~~~~~~l~~~l~ 75 (79)
.+.+.++++.++
T Consensus 107 ~~~~~~~l~~~~ 118 (235)
T cd03299 107 ERKVLEIAEMLG 118 (235)
T ss_pred HHHHHHHHHHcC
Confidence 334455555544
No 195
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.52 E-value=2.7e-14 Score=83.60 Aligned_cols=52 Identities=23% Similarity=0.377 Sum_probs=39.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-------------EEEEEecCCccH---HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-------------VGIATVSQDPDI---IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-------------~~~~~v~q~~~~---~~v~~~i~~ 52 (79)
+++|+|+||||||||+++|+|+.+|+. .+++ ..++|++|++.. .++.+++..
T Consensus 33 ~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 103 (510)
T PRK09700 33 IHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYI 103 (510)
T ss_pred EEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhh
Confidence 479999999999999999999998762 1221 248999998643 477777754
No 196
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.52 E-value=2.9e-14 Score=85.82 Aligned_cols=52 Identities=21% Similarity=0.242 Sum_probs=41.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH--HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI--IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~--~~v~~~i~~ 52 (79)
.++|+|+||||||||+++|.|+++|+. .+++ ..+++|+|++.+ .++.+|+..
T Consensus 481 ~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~ 549 (686)
T TIGR03797 481 FVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAG 549 (686)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhc
Confidence 379999999999999999999999872 2332 368999999866 367777753
No 197
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.51 E-value=3.7e-14 Score=84.12 Aligned_cols=51 Identities=24% Similarity=0.232 Sum_probs=40.4
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH--HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI--IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~--~~v~~~i~~ 52 (79)
.++|+|+||||||||+++|.|++ |+. .+++ +.++||+|++.+ .++.+||..
T Consensus 378 ~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~ 445 (588)
T PRK11174 378 RIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLL 445 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhc
Confidence 37999999999999999999999 652 2232 268999999866 378888764
No 198
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.51 E-value=7.8e-14 Score=75.97 Aligned_cols=53 Identities=21% Similarity=0.236 Sum_probs=39.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC------CCCc-----------------EEEEEecCCccH---HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK------IFDE-----------------VGIATVSQDPDI---IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~------~~~~-----------------~~~~~v~q~~~~---~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+.+|+. .+++ ..++|+||++.. .++.+++...
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 110 (262)
T PRK09984 32 MVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIG 110 (262)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhh
Confidence 478999999999999999999987641 1111 247899999743 5778887643
No 199
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.51 E-value=2.3e-14 Score=83.06 Aligned_cols=52 Identities=25% Similarity=0.335 Sum_probs=43.0
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhcccC---CCC------------cEEEEEecCCccHH--HHHHHHHHH
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQEK---IFD------------EVGIATVSQDPDII--KVQGELAKS 53 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~~---~~~------------~~~~~~v~q~~~~~--~v~~~i~~~ 53 (79)
+||+||||||||||.|.|.|..+|.. .+| ++.++|+||+.+++ ++.+||...
T Consensus 365 lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf 433 (580)
T COG4618 365 LGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARF 433 (580)
T ss_pred EEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhc
Confidence 68999999999999999999999872 122 45799999998775 788888754
No 200
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.51 E-value=8.4e-14 Score=75.58 Aligned_cols=41 Identities=29% Similarity=0.289 Sum_probs=32.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc----cC---CCC----------cEEEEEecCCc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ----EK---IFD----------EVGIATVSQDP 41 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~----~~---~~~----------~~~~~~v~q~~ 41 (79)
+++|+|+||||||||+++|+|+.+| +. .++ ...++|++|++
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~ 88 (254)
T PRK10418 31 VLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNP 88 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCC
Confidence 4789999999999999999999987 41 121 13589999996
No 201
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.51 E-value=3.4e-14 Score=85.87 Aligned_cols=52 Identities=29% Similarity=0.382 Sum_probs=41.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH--HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI--IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~--~~v~~~i~~ 52 (79)
.++|+|+||||||||+++|.|+++|+. .+++ ..+++|+|++.+ .++.+|+..
T Consensus 509 ~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~ 577 (711)
T TIGR00958 509 VVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAY 577 (711)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhc
Confidence 379999999999999999999999872 2332 368999999865 477788754
No 202
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.51 E-value=5.5e-14 Score=82.50 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=23.0
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhh--ccc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQL--RQE 26 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~--~~~ 26 (79)
+++|+|+||||||||+++|+|++ +|+
T Consensus 28 ~~~iiG~nGsGKSTLl~~l~Gl~~~~p~ 55 (520)
T TIGR03269 28 VLGILGRSGAGKSVLMHVLRGMDQYEPT 55 (520)
T ss_pred EEEEECCCCCCHHHHHHHHhhcccCCCC
Confidence 47999999999999999999996 454
No 203
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.51 E-value=6.3e-14 Score=82.43 Aligned_cols=75 Identities=19% Similarity=0.132 Sum_probs=47.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc-----c-C--CCC----------------cEEEEEecCCcc-----HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ-----E-K--IFD----------------EVGIATVSQDPD-----IIKVQGELA 51 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~-----~-~--~~~----------------~~~~~~v~q~~~-----~~~v~~~i~ 51 (79)
+++|+|+||||||||+++|+|+++| + . .++ ...++|+||++. ..++.+++.
T Consensus 37 ~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~ 116 (529)
T PRK15134 37 TLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLY 116 (529)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHH
Confidence 4799999999999999999999985 2 1 111 125899999963 245666655
Q ss_pred HHhc--CCCChhhHHHHHHHHHHHHh
Q 044571 52 KSLG--WALNEKDEKERADRLRLMFS 75 (79)
Q Consensus 52 ~~~~--~~~~~~~~~~~~~~l~~~l~ 75 (79)
.... ......+..+++.++++.++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~l~~~g 142 (529)
T PRK15134 117 EVLSLHRGMRREAARGEILNCLDRVG 142 (529)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHCC
Confidence 4321 12222223345556666554
No 204
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.51 E-value=3.5e-14 Score=82.88 Aligned_cols=53 Identities=23% Similarity=0.355 Sum_probs=40.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-------------EEEEEecCCccH---HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-------------VGIATVSQDPDI---IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-------------~~~~~v~q~~~~---~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+++|+. .+++ ..++|++|++.. .++.+++...
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~ 97 (491)
T PRK10982 26 IHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLG 97 (491)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhcc
Confidence 478999999999999999999998762 1222 248899998743 4777877643
No 205
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.51 E-value=6.7e-14 Score=75.38 Aligned_cols=52 Identities=19% Similarity=0.294 Sum_probs=36.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhh--cccC---CCCc-------------EEEEEecCCccH---HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQL--RQEK---IFDE-------------VGIATVSQDPDI---IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~--~~~~---~~~~-------------~~~~~v~q~~~~---~~v~~~i~~ 52 (79)
+++|+|+||||||||+++|+|+. +|+. .+++ ..++|++|++.. .++.+++..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~ 100 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRS 100 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHH
Confidence 47899999999999999999995 4541 1111 137889999754 456666544
No 206
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.51 E-value=6.8e-14 Score=74.84 Aligned_cols=73 Identities=14% Similarity=0.102 Sum_probs=46.0
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhcccCC---CCcEE-EEE-ecCCc-cHHHHHHHHHHHh-cCCCChhhHHHHHHHHHHHH
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQEKI---FDEVG-IAT-VSQDP-DIIKVQGELAKSL-GWALNEKDEKERADRLRLMF 74 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~~~---~~~~~-~~~-v~q~~-~~~~v~~~i~~~~-~~~~~~~~~~~~~~~l~~~l 74 (79)
+||+|+||||||||+|+|.|.++|+.. ..++. |.+ +...+ +..+-.+|+.... -.+...++.+++.+++.++-
T Consensus 56 vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~eIieFa 135 (249)
T COG1134 56 VGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFA 135 (249)
T ss_pred EEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 799999999999999999999999831 22211 110 11122 2246667766543 34555666666666666653
No 207
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.51 E-value=1e-13 Score=75.10 Aligned_cols=53 Identities=21% Similarity=0.282 Sum_probs=38.4
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhc-----ccC---CCC--------------cEEEEEecCCccH--HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLR-----QEK---IFD--------------EVGIATVSQDPDI--IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~-----~~~---~~~--------------~~~~~~v~q~~~~--~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+.. ++. .++ ...++|++|++.. .++.+++...
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~ 110 (253)
T PRK14242 34 VTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYG 110 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCcCcHHHHHHHH
Confidence 478999999999999999999863 221 111 1358999998643 3777777654
No 208
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.51 E-value=6e-14 Score=82.07 Aligned_cols=75 Identities=19% Similarity=0.243 Sum_probs=49.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-------------EEEEEecCCccH---HHHHHHHHHHhcC---C-
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-------------VGIATVSQDPDI---IKVQGELAKSLGW---A- 57 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-------------~~~~~v~q~~~~---~~v~~~i~~~~~~---~- 57 (79)
+++|+|+||||||||+++|+|+++|+. .+++ ..++|++|++.. .++.+++...... .
T Consensus 32 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~ 111 (501)
T PRK11288 32 VHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGI 111 (501)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCC
Confidence 478999999999999999999998762 1211 247899998643 4778887654211 1
Q ss_pred CChhhHHHHHHHHHHHHh
Q 044571 58 LNEKDEKERADRLRLMFS 75 (79)
Q Consensus 58 ~~~~~~~~~~~~l~~~l~ 75 (79)
....+..+++.++++.++
T Consensus 112 ~~~~~~~~~~~~~l~~~~ 129 (501)
T PRK11288 112 VNRRLLNYEAREQLEHLG 129 (501)
T ss_pred CCHHHHHHHHHHHHHHcC
Confidence 112222335556666654
No 209
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.51 E-value=6.4e-14 Score=73.49 Aligned_cols=52 Identities=12% Similarity=0.237 Sum_probs=38.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc--------EEEEEecCCccH---HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE--------VGIATVSQDPDI---IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~--------~~~~~v~q~~~~---~~v~~~i~~ 52 (79)
+++|+|+||||||||+++|+|+.+|+. .+++ ..++|++|++.. .++.+++..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~ 93 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKF 93 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHHH
Confidence 478999999999999999999988872 1222 236788887632 467777754
No 210
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.50 E-value=1.6e-13 Score=74.18 Aligned_cols=52 Identities=17% Similarity=0.273 Sum_probs=38.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhc---ccC---CCCc------------EEEEEecCCccH--HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLR---QEK---IFDE------------VGIATVSQDPDI--IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~---~~~---~~~~------------~~~~~v~q~~~~--~~v~~~i~~ 52 (79)
+++|+|+||+|||||+++|+|+++ |.. .+++ ..++|+||++.. .++.+++..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv~eni~~ 101 (246)
T PRK14269 30 ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISY 101 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccHHHHhhh
Confidence 478999999999999999999974 331 1211 258999999744 467777654
No 211
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.50 E-value=1.5e-13 Score=82.07 Aligned_cols=77 Identities=25% Similarity=0.294 Sum_probs=58.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc------CCCCc---------EEEEEecCCc---cHHHHHHHHHHHhcCCC----
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE------KIFDE---------VGIATVSQDP---DIIKVQGELAKSLGWAL---- 58 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~------~~~~~---------~~~~~v~q~~---~~~~v~~~i~~~~~~~~---- 58 (79)
+.||+||||||||||+++++|..... ..+++ +..+||.|+- +.++|.+++........
T Consensus 58 l~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~ 137 (613)
T KOG0061|consen 58 LLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSL 137 (613)
T ss_pred EEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCC
Confidence 46899999999999999999998753 12222 3689999985 55799999988765432
Q ss_pred ChhhHHHHHHHHHHHHh-hh
Q 044571 59 NEKDEKERADRLRLMFS-ER 77 (79)
Q Consensus 59 ~~~~~~~~~~~l~~~l~-~~ 77 (79)
+..+..++++++++.|+ ++
T Consensus 138 ~~~~k~~~V~~vi~~LgL~~ 157 (613)
T KOG0061|consen 138 SKEEKRERVEEVISELGLEK 157 (613)
T ss_pred CHHHHHHHHHHHHHHcCChh
Confidence 33556678899998887 54
No 212
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.50 E-value=5.6e-14 Score=83.43 Aligned_cols=52 Identities=23% Similarity=0.365 Sum_probs=41.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH--HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI--IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~--~~v~~~i~~ 52 (79)
.++|+|+||||||||+++|.|+++|+. .+++ ..++|++|++.+ .++.+|+..
T Consensus 363 ~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~ 431 (588)
T PRK13657 363 TVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRV 431 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhc
Confidence 378999999999999999999999873 2222 368999999866 367777753
No 213
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.50 E-value=1.4e-13 Score=73.60 Aligned_cols=53 Identities=26% Similarity=0.413 Sum_probs=40.5
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhc---ccC---CCC---------cEEEEEecCCccH---HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLR---QEK---IFD---------EVGIATVSQDPDI---IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~---~~~---~~~---------~~~~~~v~q~~~~---~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|.|+.+ ++. .++ ...+++++|++.. .++.+++...
T Consensus 35 ~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~ 105 (226)
T cd03234 35 VMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYT 105 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHH
Confidence 478999999999999999999988 552 122 1358899998743 4788887653
No 214
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.50 E-value=6.1e-14 Score=82.03 Aligned_cols=52 Identities=23% Similarity=0.379 Sum_probs=39.5
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-------------EEEEEecCCcc------HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-------------VGIATVSQDPD------IIKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-------------~~~~~v~q~~~------~~~v~~~i~~ 52 (79)
+++|+|+||||||||+++|+|+.+|+. .+++ ..++|++|++. ..++.+++..
T Consensus 280 ~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~ 353 (501)
T PRK10762 280 ILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSL 353 (501)
T ss_pred EEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhh
Confidence 478999999999999999999998762 1221 24899999852 2467777754
No 215
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.50 E-value=3e-14 Score=73.54 Aligned_cols=50 Identities=26% Similarity=0.416 Sum_probs=37.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-----------EEEEEecCCccH---HHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-----------VGIATVSQDPDI---IKVQGEL 50 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-----------~~~~~v~q~~~~---~~v~~~i 50 (79)
+++|+|+||||||||+++|+|+.+|.. .+++ ..++|++|++.. .++.+++
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~ 94 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENL 94 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHh
Confidence 378999999999999999999988752 1211 357899999643 3555654
No 216
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.50 E-value=3.7e-14 Score=76.18 Aligned_cols=51 Identities=24% Similarity=0.369 Sum_probs=38.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH--HHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI--IKVQGELA 51 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~--~~v~~~i~ 51 (79)
+++|+|+||||||||+++|+|+.+|+. .+++ ..++|++|++.. .++.+++.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~ 97 (237)
T cd03252 30 VVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIA 97 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHHhh
Confidence 478999999999999999999998762 2222 358999999744 35666654
No 217
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.50 E-value=1.3e-13 Score=74.68 Aligned_cols=52 Identities=21% Similarity=0.309 Sum_probs=38.4
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc-----cC---CCC--------------cEEEEEecCCccH--HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ-----EK---IFD--------------EVGIATVSQDPDI--IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~-----~~---~~~--------------~~~~~~v~q~~~~--~~v~~~i~~ 52 (79)
+++|+|+||+|||||+++|.|+.+| +. .++ ...++|++|++.. .++.+++..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~ 107 (251)
T PRK14270 32 ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAY 107 (251)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCCCcHHHHHHh
Confidence 4789999999999999999999764 21 111 1248999999743 467777754
No 218
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.50 E-value=6.6e-14 Score=79.76 Aligned_cols=74 Identities=24% Similarity=0.230 Sum_probs=54.8
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhcccC--CCCc---------------EEEEEecCCc-----cHHHHHHHHHHHhcCC--
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQEK--IFDE---------------VGIATVSQDP-----DIIKVQGELAKSLGWA-- 57 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~~--~~~~---------------~~~~~v~q~~-----~~~~v~~~i~~~~~~~-- 57 (79)
+||||+||||||||.+++.++++++. .|.+ +.+-.||||| +-+++.+-|.+.+..+
T Consensus 316 lGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~ 395 (534)
T COG4172 316 LGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP 395 (534)
T ss_pred EEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC
Confidence 68999999999999999999998872 2332 2578899998 3378888888888644
Q ss_pred -CChhhHHHHHHHHHHHHh
Q 044571 58 -LNEKDEKERADRLRLMFS 75 (79)
Q Consensus 58 -~~~~~~~~~~~~l~~~l~ 75 (79)
.+..+.++++.+.++.++
T Consensus 396 ~ls~~eR~~rv~~aL~EVG 414 (534)
T COG4172 396 KLSAAERDQRVIEALEEVG 414 (534)
T ss_pred CCCHHHHHHHHHHHHHHcC
Confidence 334445556666666554
No 219
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.50 E-value=5.3e-14 Score=70.03 Aligned_cols=43 Identities=26% Similarity=0.419 Sum_probs=33.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI 43 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~ 43 (79)
+++|+|+||||||||+++|+|..++.. .+++ ..+++++|++..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 70 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQL 70 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCH
T ss_pred EEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccc
Confidence 478999999999999999999998861 1221 257899998643
No 220
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.50 E-value=1.7e-13 Score=74.51 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=38.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc-----cC---CCC--------------cEEEEEecCCccH--HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ-----EK---IFD--------------EVGIATVSQDPDI--IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~-----~~---~~~--------------~~~~~~v~q~~~~--~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|.|+.++ +. .++ ...++|++|++.. .++.+++...
T Consensus 40 ~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~ 116 (258)
T PRK14268 40 VTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYG 116 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCcccHHHHHHHH
Confidence 4789999999999999999999864 21 111 1247899998643 4777777643
No 221
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.50 E-value=1.2e-13 Score=73.48 Aligned_cols=51 Identities=20% Similarity=0.313 Sum_probs=37.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH--HHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI--IKVQGELA 51 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~--~~v~~~i~ 51 (79)
+++|+||||||||||+++|.|+.+|.. .+++ ..++|++|++.. .++.+++.
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~ 99 (220)
T cd03245 32 KVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNIT 99 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHHhh
Confidence 478999999999999999999988762 1222 247899999754 35555543
No 222
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.50 E-value=1.3e-13 Score=75.97 Aligned_cols=53 Identities=21% Similarity=0.278 Sum_probs=38.4
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhc-----ccC---CCC--------------cEEEEEecCCccH--HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLR-----QEK---IFD--------------EVGIATVSQDPDI--IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~-----~~~---~~~--------------~~~~~~v~q~~~~--~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+.+ |+. .++ ...++|++|++.. .++.+++...
T Consensus 67 ~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~ 143 (285)
T PRK14254 67 VTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYG 143 (285)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcCCHHHHHHHH
Confidence 478999999999999999999986 231 111 1257899999643 3677777543
No 223
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.50 E-value=7.3e-14 Score=82.15 Aligned_cols=75 Identities=23% Similarity=0.222 Sum_probs=48.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC--CCCc---------------EEEEEecCCcc-----HHHHHHHHHHHhcCC-
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK--IFDE---------------VGIATVSQDPD-----IIKVQGELAKSLGWA- 57 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~--~~~~---------------~~~~~v~q~~~-----~~~v~~~i~~~~~~~- 57 (79)
+++|+|+||||||||+++|+|+++... .+++ ..++|+||++. ..++.+++.......
T Consensus 314 ~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~ 393 (529)
T PRK15134 314 TLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQ 393 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhcc
Confidence 479999999999999999999985331 1211 24799999962 247888886643211
Q ss_pred --CChhhHHHHHHHHHHHHh
Q 044571 58 --LNEKDEKERADRLRLMFS 75 (79)
Q Consensus 58 --~~~~~~~~~~~~l~~~l~ 75 (79)
....+..+.+.++++.++
T Consensus 394 ~~~~~~~~~~~~~~~l~~~~ 413 (529)
T PRK15134 394 PTLSAAQREQQVIAVMEEVG 413 (529)
T ss_pred ccCChHHHHHHHHHHHHHcC
Confidence 122222345556666554
No 224
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.50 E-value=5.2e-14 Score=75.56 Aligned_cols=51 Identities=20% Similarity=0.211 Sum_probs=38.4
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH--HHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI--IKVQGELA 51 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~--~~v~~~i~ 51 (79)
+++|+|+||||||||+++|+|+.+|.. .+++ ..++|++|++.. .++.+++.
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~ 96 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIR 96 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHHHHh
Confidence 478999999999999999999998762 2222 247899999754 35555554
No 225
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.50 E-value=3e-14 Score=76.61 Aligned_cols=51 Identities=24% Similarity=0.341 Sum_probs=38.0
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH--HHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI--IKVQGELA 51 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~--~~v~~~i~ 51 (79)
+++|+|+||||||||+++|+|+.+|.. .+++ ..++|++|++.. .++.+++.
T Consensus 31 ~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~ 98 (238)
T cd03249 31 TVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIR 98 (238)
T ss_pred EEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHHhh
Confidence 478999999999999999999988762 1221 248999998643 35555553
No 226
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.50 E-value=1.1e-13 Score=74.96 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=24.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
+++|+|+||||||||+++|+|+.+|.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~~~~ 56 (253)
T TIGR02323 31 VLGIVGESGSGKSTLLGCLAGRLAPD 56 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 47899999999999999999998876
No 227
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=1.5e-13 Score=74.51 Aligned_cols=53 Identities=17% Similarity=0.281 Sum_probs=38.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhc--c---c-C--CCC--------------cEEEEEecCCccH---HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLR--Q---E-K--IFD--------------EVGIATVSQDPDI---IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~--~---~-~--~~~--------------~~~~~~v~q~~~~---~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+.+ | + . .++ ...++|+||++.. .++.+++...
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~ 109 (252)
T PRK14256 32 VTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAG 109 (252)
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhH
Confidence 478999999999999999999975 2 2 1 111 1348899999643 4777887643
No 228
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=1.9e-13 Score=74.36 Aligned_cols=54 Identities=22% Similarity=0.323 Sum_probs=40.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---C------CC------------cEEEEEecCCccH---HHHHHHHHHHh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---I------FD------------EVGIATVSQDPDI---IKVQGELAKSL 54 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~------~~------------~~~~~~v~q~~~~---~~v~~~i~~~~ 54 (79)
+++|+|+||+|||||+++|+|+.+|+. . ++ ...++|++|++.. .++.+++....
T Consensus 38 ~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~ 115 (257)
T PRK14246 38 IFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPL 115 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHH
Confidence 478999999999999999999988752 0 11 1357999999743 47888876543
No 229
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.49 E-value=6.1e-14 Score=82.93 Aligned_cols=51 Identities=29% Similarity=0.373 Sum_probs=40.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH--HHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI--IKVQGELA 51 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~--~~v~~~i~ 51 (79)
.++|+|+||+|||||+++|.|+++|+. .+++ ..++|++|++.+ .++.+|+.
T Consensus 360 ~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~ 427 (571)
T TIGR02203 360 TVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIA 427 (571)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHh
Confidence 378999999999999999999998872 2332 358999999865 36777775
No 230
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=1.3e-13 Score=80.45 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=38.9
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhcccC--CCCc------------EEEEEecCCccH--HHHHHHHH
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQEK--IFDE------------VGIATVSQDPDI--IKVQGELA 51 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~~--~~~~------------~~~~~v~q~~~~--~~v~~~i~ 51 (79)
+||+|+|||||||++|+|.+....+. ..++ +.+++||||..+ .++..||.
T Consensus 381 VaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~ 446 (591)
T KOG0057|consen 381 VAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIK 446 (591)
T ss_pred EEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhh
Confidence 79999999999999999999988552 2332 368999999866 35666654
No 231
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.49 E-value=1.2e-13 Score=75.67 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=39.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc--------C---CCCc------------EEEEEecCCccH---HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE--------K---IFDE------------VGIATVSQDPDI---IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~--------~---~~~~------------~~~~~v~q~~~~---~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+++|. . .+++ ..++|++|++.. .++.+++...
T Consensus 29 ~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~ 107 (272)
T PRK13547 29 VTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLG 107 (272)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhc
Confidence 47899999999999999999998774 1 1221 136899998632 5777887653
No 232
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=1.8e-13 Score=74.48 Aligned_cols=52 Identities=17% Similarity=0.215 Sum_probs=37.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc------cC--CCC--------------cEEEEEecCCccH--HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ------EK--IFD--------------EVGIATVSQDPDI--IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~------~~--~~~--------------~~~~~~v~q~~~~--~~v~~~i~~ 52 (79)
+++|+|+||||||||+++|+|+.++ .. .++ ...++|++|++.. .++.+++..
T Consensus 40 ~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~ 115 (259)
T PRK14274 40 VTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAY 115 (259)
T ss_pred EEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcccccCHHHHHHh
Confidence 4789999999999999999999862 11 111 1247899999643 367777654
No 233
>PLN03211 ABC transporter G-25; Provisional
Probab=99.49 E-value=1.5e-13 Score=82.60 Aligned_cols=75 Identities=19% Similarity=0.209 Sum_probs=50.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc---C--CCCc--------EEEEEecCCccH---HHHHHHHHHHhcCC----CCh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE---K--IFDE--------VGIATVSQDPDI---IKVQGELAKSLGWA----LNE 60 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~---~--~~~~--------~~~~~v~q~~~~---~~v~~~i~~~~~~~----~~~ 60 (79)
+++|+||||+|||||+++|+|..++. . .+++ +.++||+|++.. .++.+++....... ...
T Consensus 96 ~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~ 175 (659)
T PLN03211 96 ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTK 175 (659)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCH
Confidence 47899999999999999999998763 1 1222 347999999643 57888886543221 122
Q ss_pred hhHHHHHHHHHHHHh
Q 044571 61 KDEKERADRLRLMFS 75 (79)
Q Consensus 61 ~~~~~~~~~l~~~l~ 75 (79)
++..++++++++.++
T Consensus 176 ~~~~~~v~~~l~~lg 190 (659)
T PLN03211 176 QEKILVAESVISELG 190 (659)
T ss_pred HHHHHHHHHHHHHcC
Confidence 223345677777765
No 234
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.49 E-value=4.8e-14 Score=75.61 Aligned_cols=51 Identities=31% Similarity=0.330 Sum_probs=38.4
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH--HHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI--IKVQGELA 51 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~--~~v~~~i~ 51 (79)
+++|+|+||||||||+++|+|+.+|+. .+++ +.++|++|++.. .++.+++.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~ 97 (234)
T cd03251 30 TVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIA 97 (234)
T ss_pred EEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHHhh
Confidence 478999999999999999999998862 1221 247899999743 35666654
No 235
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=4.7e-14 Score=82.95 Aligned_cols=51 Identities=24% Similarity=0.358 Sum_probs=39.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC-cEEEEEecCCccH---HHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD-EVGIATVSQDPDI---IKVQGELA 51 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~-~~~~~~v~q~~~~---~~v~~~i~ 51 (79)
+++|+|+||||||||+++|+|+++|+. .++ ...++|++|++.. .++.+++.
T Consensus 29 ~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 86 (530)
T PRK15064 29 RYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVI 86 (530)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcHHHHHH
Confidence 479999999999999999999998862 233 2458999998633 45666654
No 236
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.49 E-value=3e-14 Score=77.26 Aligned_cols=43 Identities=23% Similarity=0.256 Sum_probs=34.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC-cEEEEEecCCccH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD-EVGIATVSQDPDI 43 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~-~~~~~~v~q~~~~ 43 (79)
+++|+|+||||||||+++|+|+.+|+. .++ ...++|++|++..
T Consensus 32 ~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~ 78 (251)
T PRK09544 32 ILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYL 78 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEecccccc
Confidence 478999999999999999999998863 222 2358999998643
No 237
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.48 E-value=7.3e-14 Score=82.08 Aligned_cols=52 Identities=25% Similarity=0.228 Sum_probs=41.0
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH--HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI--IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~--~~v~~~i~~ 52 (79)
.++|+|+||||||||+++|.|+++|+. .+++ +.+++|+|++.. .++.+|+..
T Consensus 350 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~ 418 (529)
T TIGR02857 350 RVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRL 418 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhc
Confidence 378999999999999999999999872 2222 258999999855 467777754
No 238
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.48 E-value=7.7e-14 Score=74.62 Aligned_cols=51 Identities=25% Similarity=0.322 Sum_probs=37.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC------------cEEEEEecCCccHH--HHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD------------EVGIATVSQDPDII--KVQGELA 51 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~------------~~~~~~v~q~~~~~--~v~~~i~ 51 (79)
+++|+||||||||||+++|.|+.+|.. .++ ...++|++|++... ++.+++.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~~~ 98 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIR 98 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHHHh
Confidence 478999999999999999999998762 122 13489999997542 4555543
No 239
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.48 E-value=1.7e-13 Score=81.90 Aligned_cols=75 Identities=24% Similarity=0.272 Sum_probs=52.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC------CCCc---------EEEEEecCCcc---HHHHHHHHHHHhcCCC----
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK------IFDE---------VGIATVSQDPD---IIKVQGELAKSLGWAL---- 58 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~------~~~~---------~~~~~v~q~~~---~~~v~~~i~~~~~~~~---- 58 (79)
+++|+||||||||||+++|.|..++.. .+++ +.++|++|++. ..++.+++........
T Consensus 53 ~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 132 (617)
T TIGR00955 53 LLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRV 132 (617)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCC
Confidence 378999999999999999999887631 2222 24699999973 3589999876553321
Q ss_pred ChhhHHHHHHHHHHHHh
Q 044571 59 NEKDEKERADRLRLMFS 75 (79)
Q Consensus 59 ~~~~~~~~~~~l~~~l~ 75 (79)
...+..++++++++.++
T Consensus 133 ~~~~~~~~v~~~l~~lg 149 (617)
T TIGR00955 133 TKKEKRERVDEVLQALG 149 (617)
T ss_pred CHHHHHHHHHHHHHHcC
Confidence 22333446777777765
No 240
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.48 E-value=7.6e-14 Score=83.60 Aligned_cols=41 Identities=22% Similarity=0.324 Sum_probs=34.0
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CC-CcEEEEEecCCc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IF-DEVGIATVSQDP 41 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~-~~~~~~~v~q~~ 41 (79)
+++|+||||||||||+++|+|..+|+. .+ ....++|++|+.
T Consensus 340 ~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~ 384 (638)
T PRK10636 340 RIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQ 384 (638)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcc
Confidence 479999999999999999999998863 22 245789999974
No 241
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.48 E-value=1.5e-13 Score=75.15 Aligned_cols=52 Identities=25% Similarity=0.248 Sum_probs=38.0
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC---------------cEEEEEecCCcc--H---HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD---------------EVGIATVSQDPD--I---IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~---------------~~~~~~v~q~~~--~---~~v~~~i~~ 52 (79)
+++|+|+||||||||+++|+|+.+|.. .++ ...++|++|++. . .++.+++..
T Consensus 40 ~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~ 114 (268)
T PRK10419 40 TVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIRE 114 (268)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHH
Confidence 478999999999999999999988762 111 125889999862 1 356666543
No 242
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.48 E-value=2.2e-13 Score=74.45 Aligned_cols=53 Identities=19% Similarity=0.226 Sum_probs=39.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc-----cC---CCC--------------cEEEEEecCCccH--HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ-----EK---IFD--------------EVGIATVSQDPDI--IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~-----~~---~~~--------------~~~~~~v~q~~~~--~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+.+| +. .++ ...++|+||++.. .++.+++...
T Consensus 48 ~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~ 124 (267)
T PRK14237 48 ITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFA 124 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCccccccHHHHHHhH
Confidence 4789999999999999999999863 21 111 2258999998743 4777777654
No 243
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.48 E-value=1.2e-13 Score=75.88 Aligned_cols=53 Identities=15% Similarity=0.241 Sum_probs=39.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc-----c-C--CCC-------------cEEEEEecCCccH--HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ-----E-K--IFD-------------EVGIATVSQDPDI--IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~-----~-~--~~~-------------~~~~~~v~q~~~~--~~v~~~i~~~ 53 (79)
+++|+|+||+|||||+++|.|+.+| . . .++ ...++|++|++.. .++.+++...
T Consensus 49 ~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~~tv~eni~~~ 124 (276)
T PRK14271 49 VTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAG 124 (276)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCCccHHHHHHHH
Confidence 4789999999999999999999875 2 1 111 1247899998643 4777777543
No 244
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.48 E-value=8.5e-14 Score=81.76 Aligned_cols=54 Identities=22% Similarity=0.341 Sum_probs=42.0
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC----CCCcEEEEEecCCccH---HHHHHHHHHHh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK----IFDEVGIATVSQDPDI---IKVQGELAKSL 54 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~----~~~~~~~~~v~q~~~~---~~v~~~i~~~~ 54 (79)
.+||||+||+|||||+|+|.|...|+. .-....++|+.|+++. .++.+.+....
T Consensus 31 riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~ 91 (530)
T COG0488 31 RIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGF 91 (530)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhh
Confidence 379999999999999999999998873 2223579999999855 36666665543
No 245
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.48 E-value=1.3e-13 Score=72.57 Aligned_cols=53 Identities=25% Similarity=0.382 Sum_probs=40.0
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-----------EEEEEecCCccH---HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-----------VGIATVSQDPDI---IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-----------~~~~~v~q~~~~---~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+.+|+. .+++ ..++|++|++.. .++.+++...
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~ 98 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYD 98 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHH
Confidence 478999999999999999999998862 1111 257899998633 4677777654
No 246
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.48 E-value=5.7e-14 Score=77.29 Aligned_cols=50 Identities=22% Similarity=0.197 Sum_probs=38.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCcEEEEEecCCccH--HHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDEVGIATVSQDPDI--IKVQGELA 51 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~~~~~~v~q~~~~--~~v~~~i~ 51 (79)
+++|+|+||||||||+++|+|+++|.. .+++ .++|++|++.. .++.+++.
T Consensus 65 ~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-~i~yv~q~~~l~~~tv~enl~ 119 (282)
T cd03291 65 MLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-RISFSSQFSWIMPGTIKENII 119 (282)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-EEEEEeCcccccccCHHHHhh
Confidence 478999999999999999999998863 2333 48899999743 35555554
No 247
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.48 E-value=6.9e-14 Score=74.39 Aligned_cols=52 Identities=15% Similarity=0.231 Sum_probs=38.4
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC----------------cEEEEEecCCccH--HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD----------------EVGIATVSQDPDI--IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~----------------~~~~~~v~q~~~~--~~v~~~i~~ 52 (79)
+++|+|+||||||||+++|+|+.+|+. .++ ...++|++|++.. .++.+++..
T Consensus 29 ~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~ 101 (218)
T cd03290 29 LTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITF 101 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccccccHHHHHhh
Confidence 478999999999999999999987751 110 1358899999743 356666543
No 248
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.48 E-value=1.8e-13 Score=82.54 Aligned_cols=51 Identities=24% Similarity=0.382 Sum_probs=40.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccHH--HHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDII--KVQGELA 51 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~~--~v~~~i~ 51 (79)
.++|+|+||||||||+++|.|+++|+. .+++ ..+++|+|++.+. ++.+|+.
T Consensus 493 ~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~ 560 (694)
T TIGR03375 493 KVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIA 560 (694)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHh
Confidence 379999999999999999999999873 2232 3689999998663 6777765
No 249
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.48 E-value=2.7e-13 Score=73.37 Aligned_cols=53 Identities=23% Similarity=0.281 Sum_probs=38.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc-----c-C--CCC--------------cEEEEEecCCccH--HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ-----E-K--IFD--------------EVGIATVSQDPDI--IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~-----~-~--~~~--------------~~~~~~v~q~~~~--~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+.++ . . .++ ...++|++|++.. .++.+++...
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~ 107 (250)
T PRK14262 31 ITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFG 107 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCcccHHHHHHHH
Confidence 4789999999999999999999763 2 1 111 1358999998643 4677777543
No 250
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.47 E-value=1.1e-13 Score=81.06 Aligned_cols=52 Identities=17% Similarity=0.279 Sum_probs=39.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-------------EEEEEecCCc---c---HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-------------VGIATVSQDP---D---IIKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-------------~~~~~v~q~~---~---~~~v~~~i~~ 52 (79)
+++|+||||||||||+++|+|+.+|+. .+++ ..++|++|++ . ..++.+++..
T Consensus 291 ~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~ 364 (510)
T PRK09700 291 ILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAI 364 (510)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhcc
Confidence 479999999999999999999998762 1221 2479999973 2 2467777764
No 251
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.47 E-value=6e-14 Score=74.95 Aligned_cols=51 Identities=25% Similarity=0.429 Sum_probs=37.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC------------cEEEEEecCCccH--HHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD------------EVGIATVSQDPDI--IKVQGELA 51 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~------------~~~~~~v~q~~~~--~~v~~~i~ 51 (79)
+++|+|+||+|||||+++|+|+.+|+. .++ ...++|++|++.. .++.+++.
T Consensus 42 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl~ 109 (226)
T cd03248 42 VTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIA 109 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHHhc
Confidence 478999999999999999999998762 121 1358999999754 24555543
No 252
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.47 E-value=2.1e-13 Score=72.14 Aligned_cols=52 Identities=21% Similarity=0.206 Sum_probs=38.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc---------EEEEEecCCccH---HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE---------VGIATVSQDPDI---IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~---------~~~~~v~q~~~~---~~v~~~i~~ 52 (79)
+++|+|+||||||||+++|.|+.+++. .+++ ..++|++|++.. .++.+++..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~ 96 (207)
T PRK13539 30 ALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEF 96 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHH
Confidence 478999999999999999999988762 2222 136788877532 467777654
No 253
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.47 E-value=3.2e-13 Score=73.13 Aligned_cols=53 Identities=21% Similarity=0.279 Sum_probs=38.5
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc-----c-C--CCC--------------cEEEEEecCCccH--HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ-----E-K--IFD--------------EVGIATVSQDPDI--IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~-----~-~--~~~--------------~~~~~~v~q~~~~--~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+.++ + . .++ ...++|++|++.. .++.+++...
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~ 107 (250)
T PRK14240 31 VTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYG 107 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCcccHHHHHHHH
Confidence 4789999999999999999998652 2 1 111 1257999999643 4677777653
No 254
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.47 E-value=9.9e-14 Score=73.88 Aligned_cols=50 Identities=22% Similarity=0.368 Sum_probs=37.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC------------cEEEEEecCCccHH--HHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD------------EVGIATVSQDPDII--KVQGEL 50 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~------------~~~~~~v~q~~~~~--~v~~~i 50 (79)
+++|+|+||||||||+++|+|..+|.. .++ ...++|++|++... ++.+++
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl 98 (221)
T cd03244 32 KVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNL 98 (221)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHHh
Confidence 478999999999999999999988762 122 13589999997542 455554
No 255
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.47 E-value=4.8e-14 Score=77.20 Aligned_cols=42 Identities=24% Similarity=0.234 Sum_probs=33.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc---------EEEEEecCCcc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE---------VGIATVSQDPD 42 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~---------~~~~~v~q~~~ 42 (79)
+++|+|+||||||||+++|+|+++|+. .+++ ..++|++|++.
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~ 88 (272)
T PRK15056 35 IAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEE 88 (272)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccc
Confidence 478999999999999999999998862 2222 24899999864
No 256
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.47 E-value=8.7e-14 Score=73.52 Aligned_cols=50 Identities=26% Similarity=0.363 Sum_probs=37.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH--HHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI--IKVQGEL 50 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~--~~v~~~i 50 (79)
+++|+|+||+|||||+++|.|+.++.. .+++ ..++|++|++.. .++.+++
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l 102 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL 102 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHh
Confidence 478999999999999999999988762 1221 358999999743 2555555
No 257
>PRK13409 putative ATPase RIL; Provisional
Probab=99.47 E-value=1.7e-13 Score=81.57 Aligned_cols=51 Identities=24% Similarity=0.271 Sum_probs=40.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCcEEEEEecCCccH---HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDEVGIATVSQDPDI---IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~~~~~~v~q~~~~---~~v~~~i~~ 52 (79)
+++|+|+||||||||+++|+|+++|+. .++ ..++|++|++.. .++.+++..
T Consensus 367 iv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-~~i~y~~Q~~~~~~~~tv~e~l~~ 423 (590)
T PRK13409 367 VIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISYKPQYIKPDYDGTVEDLLRS 423 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-eeEEEecccccCCCCCcHHHHHHH
Confidence 478999999999999999999998873 222 468999998643 467777654
No 258
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.47 E-value=5.6e-14 Score=72.53 Aligned_cols=49 Identities=24% Similarity=0.301 Sum_probs=36.4
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH--HHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI--IKVQGE 49 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~--~~v~~~ 49 (79)
+++|+|+||+|||||+++|.|+.+|+. .+++ ..++|++|++.. .++.++
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~ 95 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAEN 95 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHH
Confidence 378999999999999999999998862 1221 357899999743 244444
No 259
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1.4e-13 Score=82.15 Aligned_cols=55 Identities=25% Similarity=0.342 Sum_probs=45.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH--HHHHHHHHHHhc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI--IKVQGELAKSLG 55 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~--~~v~~~i~~~~~ 55 (79)
++|+|||||+||||+++++.+++.|+. .+|+ +.+++|.|+|-+ -++.+||.....
T Consensus 496 ~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~ 567 (716)
T KOG0058|consen 496 VVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD 567 (716)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCC
Confidence 479999999999999999999999982 2332 469999999966 478999887665
No 260
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.46 E-value=1.4e-13 Score=81.52 Aligned_cols=52 Identities=27% Similarity=0.317 Sum_probs=41.0
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH--HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI--IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~--~~v~~~i~~ 52 (79)
.+||+|+|||||||+++.+.++++|+. .+++ ..+++|+|++.+ .++.+||..
T Consensus 357 ~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~ 425 (567)
T COG1132 357 KVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIAL 425 (567)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhc
Confidence 378999999999999999999999862 2333 358899999865 367777654
No 261
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.46 E-value=1e-13 Score=72.07 Aligned_cols=52 Identities=27% Similarity=0.339 Sum_probs=38.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC-------------cEEEEEecCCcc------HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD-------------EVGIATVSQDPD------IIKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~-------------~~~~~~v~q~~~------~~~v~~~i~~ 52 (79)
+++|+|+||+|||||+++|.|+.+|+. .++ ...++|++|++. ..++.+++..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~ 101 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIAL 101 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHH
Confidence 368999999999999999999998862 111 125889999842 1466666643
No 262
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.46 E-value=2.5e-13 Score=73.55 Aligned_cols=54 Identities=24% Similarity=0.329 Sum_probs=39.5
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc------C--CCC--------------cEEEEEecCCccH---HHHHHHHHHHh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE------K--IFD--------------EVGIATVSQDPDI---IKVQGELAKSL 54 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~------~--~~~--------------~~~~~~v~q~~~~---~~v~~~i~~~~ 54 (79)
+++|+|+||+|||||+++|+|+.+|. . .++ ...++|++|++.. .++.+++....
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~ 110 (252)
T PRK14272 32 VNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGL 110 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHH
Confidence 47899999999999999999998642 1 111 1258899999643 47788876543
No 263
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.46 E-value=1e-13 Score=71.85 Aligned_cols=50 Identities=26% Similarity=0.405 Sum_probs=37.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-----------EEEEEecCCccH--HHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-----------VGIATVSQDPDI--IKVQGEL 50 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-----------~~~~~v~q~~~~--~~v~~~i 50 (79)
+++|+|+||||||||+++|+|+.+|+. .+++ ..++|++|++.. .++.+++
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i 95 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNL 95 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhh
Confidence 378999999999999999999998862 2222 347899998743 2455444
No 264
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.46 E-value=1.4e-13 Score=70.99 Aligned_cols=49 Identities=27% Similarity=0.310 Sum_probs=36.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH--HHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI--IKVQGE 49 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~--~~v~~~ 49 (79)
+++|+|+||+|||||+++|+|+.+|.. .+++ ..+++++|++.. .++.++
T Consensus 30 ~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~ 95 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIREN 95 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHH
Confidence 478999999999999999999998762 1221 247899998643 244444
No 265
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.46 E-value=5.5e-13 Score=72.80 Aligned_cols=53 Identities=21% Similarity=0.238 Sum_probs=38.0
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc-----c-C--CCC--------------cEEEEEecCCccH--HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ-----E-K--IFD--------------EVGIATVSQDPDI--IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~-----~-~--~~~--------------~~~~~~v~q~~~~--~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+.++ + . .++ ...+++++|++.. .++.+++...
T Consensus 38 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~ 114 (264)
T PRK14243 38 ITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYG 114 (264)
T ss_pred EEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCccccccHHHHHHhh
Confidence 4789999999999999999998752 2 1 111 1248999998643 3677776543
No 266
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.46 E-value=2.4e-13 Score=88.83 Aligned_cols=75 Identities=15% Similarity=0.107 Sum_probs=50.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-----------EEEEEecCCccH---HHHHHHHHHHhcC-CCChhh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-----------VGIATVSQDPDI---IKVQGELAKSLGW-ALNEKD 62 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-----------~~~~~v~q~~~~---~~v~~~i~~~~~~-~~~~~~ 62 (79)
++||+|+||||||||+|+|+|+++|+. .+++ +.++|++|++.+ +++.+++...... +....+
T Consensus 1967 i~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~ 2046 (2272)
T TIGR01257 1967 CFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEE 2046 (2272)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHH
Confidence 479999999999999999999998872 1211 358999998633 5788887653322 222223
Q ss_pred HHHHHHHHHHHHh
Q 044571 63 EKERADRLRLMFS 75 (79)
Q Consensus 63 ~~~~~~~l~~~l~ 75 (79)
..+.+.++++.++
T Consensus 2047 ~~~~v~~lLe~lg 2059 (2272)
T TIGR01257 2047 IEKVANWSIQSLG 2059 (2272)
T ss_pred HHHHHHHHHHHcC
Confidence 3345556666554
No 267
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.46 E-value=1.9e-13 Score=81.08 Aligned_cols=51 Identities=22% Similarity=0.360 Sum_probs=39.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccHH--HHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDII--KVQGELA 51 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~~--~v~~~i~ 51 (79)
.++|+|+||||||||+++|.|+++|+. .+++ ..+++++|++.+. ++.+|+.
T Consensus 368 ~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~ 435 (574)
T PRK11160 368 KVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLL 435 (574)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhh
Confidence 378999999999999999999998872 2332 2589999998653 5666654
No 268
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.46 E-value=2e-13 Score=80.12 Aligned_cols=51 Identities=18% Similarity=0.263 Sum_probs=37.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-------------EEEEEecCCcc------HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-------------VGIATVSQDPD------IIKVQGELA 51 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-------------~~~~~v~q~~~------~~~v~~~i~ 51 (79)
+++|+|+||||||||+++|+|+.+|+. .+++ ..++|++|++. ..++.+++.
T Consensus 291 ~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~ 363 (510)
T PRK15439 291 ILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVC 363 (510)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHH
Confidence 479999999999999999999988762 1221 24799999742 135666664
No 269
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.46 E-value=2.1e-13 Score=80.58 Aligned_cols=54 Identities=30% Similarity=0.372 Sum_probs=41.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-EEEEEecCCcc----HHHHHHHHHHHh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-VGIATVSQDPD----IIKVQGELAKSL 54 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-~~~~~v~q~~~----~~~v~~~i~~~~ 54 (79)
+++|+|+||||||||+++|+|+.+|+. .++. ..++|++|+++ ..++.+++....
T Consensus 350 ~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~ 411 (552)
T TIGR03719 350 IVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGL 411 (552)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhc
Confidence 478999999999999999999998863 2222 25899999853 247788876543
No 270
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.46 E-value=4.1e-13 Score=73.40 Aligned_cols=53 Identities=19% Similarity=0.334 Sum_probs=38.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhc-----ccC---CCC--------------cEEEEEecCCccH--HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLR-----QEK---IFD--------------EVGIATVSQDPDI--IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~-----~~~---~~~--------------~~~~~~v~q~~~~--~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|.|+.+ |+. .++ ...++|++|++.. .++.+++...
T Consensus 49 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~ 125 (268)
T PRK14248 49 VTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHA 125 (268)
T ss_pred EEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcccHHHHHHHH
Confidence 478999999999999999999754 331 111 1358999999743 3677777644
No 271
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.46 E-value=5.6e-13 Score=72.23 Aligned_cols=53 Identities=21% Similarity=0.250 Sum_probs=39.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc------C--CCC--------------cEEEEEecCCccH--HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE------K--IFD--------------EVGIATVSQDPDI--IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~------~--~~~--------------~~~~~~v~q~~~~--~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|.|+.+|. . .++ ...++|+||++.. .++.+++...
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~ 108 (251)
T PRK14249 32 ITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFG 108 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcCcHHHHHhhH
Confidence 47899999999999999999998764 1 111 2358999999743 3677777643
No 272
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.45 E-value=2e-13 Score=80.03 Aligned_cols=53 Identities=23% Similarity=0.357 Sum_probs=39.0
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc-cC---CCCc-------------EEEEEecCCcc------HHHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ-EK---IFDE-------------VGIATVSQDPD------IIKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~-~~---~~~~-------------~~~~~v~q~~~------~~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+.+| +. .+++ ..++|++|++. ..++.+++...
T Consensus 290 ~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~ 365 (506)
T PRK13549 290 ILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLA 365 (506)
T ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhh
Confidence 4789999999999999999999873 41 1221 23799999852 25777877643
No 273
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=3e-13 Score=74.16 Aligned_cols=52 Identities=19% Similarity=0.216 Sum_probs=37.4
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc-----c-C--CCC--------------cEEEEEecCCccH--HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ-----E-K--IFD--------------EVGIATVSQDPDI--IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~-----~-~--~~~--------------~~~~~~v~q~~~~--~~v~~~i~~ 52 (79)
+++|+|+||||||||+++|+|+.++ . . .++ ...++|+||++.. .++.+++..
T Consensus 48 ~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~ 123 (274)
T PRK14265 48 IIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAF 123 (274)
T ss_pred EEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccccHHHHHHh
Confidence 4789999999999999999998752 1 1 111 1357899999643 366777654
No 274
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.45 E-value=5.9e-13 Score=72.91 Aligned_cols=53 Identities=15% Similarity=0.307 Sum_probs=39.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhc-----ccC---CCC--------------cEEEEEecCCccH--HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLR-----QEK---IFD--------------EVGIATVSQDPDI--IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~-----~~~---~~~--------------~~~~~~v~q~~~~--~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|.|+.+ |+. .++ ...++|+||++.. .++.+++...
T Consensus 52 ~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~ 128 (271)
T PRK14238 52 VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYG 128 (271)
T ss_pred EEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccccccHHHHHHHH
Confidence 478999999999999999999986 331 111 1258999999753 3677777643
No 275
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=5.7e-13 Score=72.19 Aligned_cols=53 Identities=23% Similarity=0.284 Sum_probs=38.5
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhc--c---c-C--CCC--------------cEEEEEecCCccH--HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLR--Q---E-K--IFD--------------EVGIATVSQDPDI--IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~--~---~-~--~~~--------------~~~~~~v~q~~~~--~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+.+ | . . .++ ...+++++|++.. .++.+++...
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~ 108 (251)
T PRK14251 32 LTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYG 108 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCCCcHHHHHHHH
Confidence 478999999999999999999986 2 2 1 111 1247899999643 4777777543
No 276
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.44 E-value=6.6e-13 Score=73.23 Aligned_cols=53 Identities=23% Similarity=0.315 Sum_probs=38.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhc--c---cC---CCC--------------cEEEEEecCCccH--HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLR--Q---EK---IFD--------------EVGIATVSQDPDI--IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~--~---~~---~~~--------------~~~~~~v~q~~~~--~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|.|+.+ | +. .++ ...++|++|++.. .++.+++...
T Consensus 67 ~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~ 143 (286)
T PRK14275 67 VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYG 143 (286)
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCccCHHHHHHhH
Confidence 478999999999999999999753 2 31 111 1258899999743 3777777643
No 277
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.44 E-value=6.5e-13 Score=71.97 Aligned_cols=53 Identities=21% Similarity=0.237 Sum_probs=38.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhc--c---cC---CCC--------------cEEEEEecCCccH--HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLR--Q---EK---IFD--------------EVGIATVSQDPDI--IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~--~---~~---~~~--------------~~~~~~v~q~~~~--~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+.+ + .. .++ ...++|+||++.. .++.+++...
T Consensus 33 ~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~ni~~~ 109 (251)
T PRK14244 33 VTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYG 109 (251)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccCCHHHHHHHH
Confidence 478999999999999999999975 2 21 111 1247899999643 3677777543
No 278
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.44 E-value=5e-13 Score=73.01 Aligned_cols=51 Identities=22% Similarity=0.315 Sum_probs=36.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCcEEEEEecCCcc---HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDEVGIATVSQDPD---IIKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~~~~~~v~q~~~---~~~v~~~i~~ 52 (79)
+++|+|+||||||||+++|+|+++|+. .+++. ..+++|++. ..++.+++..
T Consensus 52 ~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~-~~~~~~~~~~~~~~tv~enl~~ 108 (264)
T PRK13546 52 VIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE-VSVIAISAGLSGQLTGIENIEF 108 (264)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE-EeEEecccCCCCCCcHHHHHHH
Confidence 378999999999999999999998863 23332 345555542 2467777654
No 279
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.44 E-value=6.1e-13 Score=72.15 Aligned_cols=53 Identities=23% Similarity=0.271 Sum_probs=37.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc------cC--CCC--------------cEEEEEecCCccH--HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ------EK--IFD--------------EVGIATVSQDPDI--IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~------~~--~~~--------------~~~~~~v~q~~~~--~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+..+ .. .++ ...++|++|++.. .++.+++...
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~ 110 (253)
T PRK14261 34 VTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYG 110 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcccHHHHHHhh
Confidence 4789999999999999999998642 11 111 1247899999743 3677777543
No 280
>PLN03073 ABC transporter F family; Provisional
Probab=99.44 E-value=2e-13 Score=82.65 Aligned_cols=41 Identities=22% Similarity=0.362 Sum_probs=33.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC-cEEEEEecCCc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD-EVGIATVSQDP 41 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~-~~~~~~v~q~~ 41 (79)
+++|+|+||||||||+++|+|+++|+. .+. ...++|++|++
T Consensus 537 ~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~ 581 (718)
T PLN03073 537 RIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHH 581 (718)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccc
Confidence 478999999999999999999998873 122 24689999986
No 281
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.44 E-value=1.6e-13 Score=72.36 Aligned_cols=53 Identities=21% Similarity=0.198 Sum_probs=39.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhc---ccC---CCC-----------cEEEEEecCCccH---HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLR---QEK---IFD-----------EVGIATVSQDPDI---IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~---~~~---~~~-----------~~~~~~v~q~~~~---~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|.|+.+ |+. .++ ...++|++|++.. .++.+++...
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 107 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFA 107 (202)
T ss_pred EEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhh
Confidence 478999999999999999999988 441 111 1257899998632 4777777643
No 282
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.44 E-value=3.8e-13 Score=72.78 Aligned_cols=53 Identities=23% Similarity=0.298 Sum_probs=38.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc------C--CCC-------------cEEEEEecCCccH--HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE------K--IFD-------------EVGIATVSQDPDI--IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~------~--~~~-------------~~~~~~v~q~~~~--~~v~~~i~~~ 53 (79)
+++|+|+||+|||||+++|+|+.++. . .++ ...++|++|++.. .++.+++...
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l~~~ 106 (249)
T PRK14253 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYG 106 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCcccHHHHHHhH
Confidence 47899999999999999999998752 1 111 1248899999743 4677777543
No 283
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.44 E-value=7.9e-13 Score=72.07 Aligned_cols=53 Identities=21% Similarity=0.300 Sum_probs=38.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc------C--CCC--------------cEEEEEecCCccH--HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE------K--IFD--------------EVGIATVSQDPDI--IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~------~--~~~--------------~~~~~~v~q~~~~--~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+.+++ . .++ ...++|++|++.. .++.+++...
T Consensus 35 ~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~ 111 (261)
T PRK14258 35 VTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYG 111 (261)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCcccHHHHHHHH
Confidence 47999999999999999999998873 1 011 1247889998643 4677776543
No 284
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.44 E-value=6.6e-13 Score=72.28 Aligned_cols=53 Identities=23% Similarity=0.244 Sum_probs=38.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc------cC--CCC--------------cEEEEEecCCccH--HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ------EK--IFD--------------EVGIATVSQDPDI--IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~------~~--~~~--------------~~~~~~v~q~~~~--~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+.++ .. .++ ...++|++|++.. .++.+++...
T Consensus 35 ~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~ 111 (259)
T PRK14260 35 VTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYG 111 (259)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCCccHHHHHHHH
Confidence 4789999999999999999999874 11 111 1248899999643 5777777543
No 285
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.44 E-value=6.7e-13 Score=71.90 Aligned_cols=53 Identities=21% Similarity=0.274 Sum_probs=37.5
Q ss_pred CeeEEcCCCCcHHHHHHHHHhh---hcc---cC--CCC--------------cEEEEEecCCccH--HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQ---LRQ---EK--IFD--------------EVGIATVSQDPDI--IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~---~~~---~~--~~~--------------~~~~~~v~q~~~~--~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+ .++ .. .++ ...++|++|++.. .++.+++...
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~ 107 (250)
T PRK14245 31 VVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYG 107 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCcccHHHHHHHH
Confidence 4789999999999999999986 343 11 111 1248999998643 3677777543
No 286
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=3.3e-13 Score=79.04 Aligned_cols=50 Identities=28% Similarity=0.340 Sum_probs=40.2
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhcccC---CCC------------cEEEEEecCCccH--HHHHHHHH
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQEK---IFD------------EVGIATVSQDPDI--IKVQGELA 51 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~~---~~~------------~~~~~~v~q~~~~--~~v~~~i~ 51 (79)
++|+|+||||||||++.|.|+.+|+. .++ .+.+++|+|+|.+ -++.+|+.
T Consensus 350 talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~ 416 (559)
T COG4988 350 TALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENIL 416 (559)
T ss_pred EEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhh
Confidence 68999999999999999999999872 122 1358999999866 36777775
No 287
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.43 E-value=2.7e-13 Score=71.12 Aligned_cols=52 Identities=25% Similarity=0.286 Sum_probs=39.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhh--cccC---CCC---------cEEEEEecCCccH---HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQL--RQEK---IFD---------EVGIATVSQDPDI---IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~--~~~~---~~~---------~~~~~~v~q~~~~---~~v~~~i~~ 52 (79)
+++|+|+||||||||+++|+|+. +|.. .++ ...+++++|++.. .++.+++..
T Consensus 37 ~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~ 105 (194)
T cd03213 37 LTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMF 105 (194)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHH
Confidence 47899999999999999999998 7752 122 1357899999643 467777654
No 288
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.43 E-value=6.3e-14 Score=72.13 Aligned_cols=75 Identities=21% Similarity=0.131 Sum_probs=52.0
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC----------CCC-------------cEEEEEecCCcc---HHHHHHHHHHHh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK----------IFD-------------EVGIATVSQDPD---IIKVQGELAKSL 54 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~----------~~~-------------~~~~~~v~q~~~---~~~v~~~i~~~~ 54 (79)
++++-||||+||||++|++|+.+.|+. ..+ ...++||+|... ...-.+-+++.+
T Consensus 39 CvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePl 118 (235)
T COG4778 39 CVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPL 118 (235)
T ss_pred EEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHH
Confidence 467889999999999999999998872 111 124788888752 234455556554
Q ss_pred c-CCCChhhHHHHHHHHHHHHh
Q 044571 55 G-WALNEKDEKERADRLRLMFS 75 (79)
Q Consensus 55 ~-~~~~~~~~~~~~~~l~~~l~ 75 (79)
. .+.+.+....++..++..|+
T Consensus 119 l~~gv~~~~a~~~a~~Ll~rLn 140 (235)
T COG4778 119 LARGVPREVARAKAADLLTRLN 140 (235)
T ss_pred HHcCCCHHHHHHHHHHHHHHcC
Confidence 3 34455556667888888877
No 289
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.43 E-value=4.9e-13 Score=71.52 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=24.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
+++|+|+||||||||+++|+|+.+|+
T Consensus 50 ~~~i~G~nGsGKSTLl~~l~G~~~p~ 75 (224)
T cd03220 50 RIGLIGRNGAGKSTLLRLLAGIYPPD 75 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 47899999999999999999999886
No 290
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.43 E-value=1.5e-13 Score=80.39 Aligned_cols=52 Identities=23% Similarity=0.442 Sum_probs=38.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-------------EEEEEecCCcc---H---HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-------------VGIATVSQDPD---I---IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-------------~~~~~v~q~~~---~---~~v~~~i~~ 52 (79)
+++|+||||||||||+++|+|+.+|+. .+++ ..++|++|++. . .++.+++..
T Consensus 281 ~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~ 354 (501)
T PRK11288 281 IVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINI 354 (501)
T ss_pred EEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhcc
Confidence 479999999999999999999988762 2221 24789999853 1 467777654
No 291
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.43 E-value=1.9e-13 Score=80.94 Aligned_cols=52 Identities=27% Similarity=0.333 Sum_probs=41.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH--HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI--IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~--~~v~~~i~~ 52 (79)
.++|+|+||||||||+++|+|+++|.. .+++ ..++|++|++.. .++.+|+..
T Consensus 368 ~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~ 436 (576)
T TIGR02204 368 TVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRY 436 (576)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhc
Confidence 378999999999999999999998872 2332 258999999865 367777753
No 292
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.43 E-value=2.5e-13 Score=81.63 Aligned_cols=52 Identities=15% Similarity=0.119 Sum_probs=40.5
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC-cEEEEEecCCccH--HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD-EVGIATVSQDPDI--IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~-~~~~~~v~q~~~~--~~v~~~i~~ 52 (79)
+++|+||||||||||+++|+|+.++.. .++ ...+++++|++.. .++.+++..
T Consensus 480 ~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~ 537 (659)
T TIGR00954 480 HLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIY 537 (659)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhc
Confidence 378999999999999999999988763 122 3468999999743 367777754
No 293
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.43 E-value=1.6e-13 Score=80.71 Aligned_cols=51 Identities=22% Similarity=0.279 Sum_probs=39.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC-cEEEEEecCCcc--H---HHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD-EVGIATVSQDPD--I---IKVQGELA 51 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~-~~~~~~v~q~~~--~---~~v~~~i~ 51 (79)
+++|+||||||||||+++|+|+.+|+. .++ ...++|++|++. . .++.+++.
T Consensus 347 ~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~ 406 (530)
T PRK15064 347 RLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMS 406 (530)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHH
Confidence 478999999999999999999998863 233 356899999853 1 35666654
No 294
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.43 E-value=2e-13 Score=80.76 Aligned_cols=53 Identities=26% Similarity=0.367 Sum_probs=40.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-EEEEEecCCc-cH---HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-VGIATVSQDP-DI---IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-~~~~~v~q~~-~~---~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+++|+. .+.. ..++|++|++ .. .++.+++...
T Consensus 352 ~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~ 412 (556)
T PRK11819 352 IVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGG 412 (556)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhh
Confidence 478999999999999999999998873 2322 3689999985 22 4777777654
No 295
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.43 E-value=8.6e-13 Score=71.50 Aligned_cols=53 Identities=21% Similarity=0.313 Sum_probs=38.4
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhc--c----cC--CCC--------------cEEEEEecCCccH--HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLR--Q----EK--IFD--------------EVGIATVSQDPDI--IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~--~----~~--~~~--------------~~~~~~v~q~~~~--~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+.+ | .. .++ ...++|++|++.. .++.+++...
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~ 109 (252)
T PRK14239 33 ITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYG 109 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCcCcHHHHHHHH
Confidence 478999999999999999999843 4 21 111 1258899999743 4777887654
No 296
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.42 E-value=2.2e-13 Score=81.62 Aligned_cols=53 Identities=26% Similarity=0.302 Sum_probs=40.4
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-EEEEEecCCcc-H---HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-VGIATVSQDPD-I---IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-~~~~~v~q~~~-~---~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+.+|+. .++. ..++|++|+++ + .++.+++...
T Consensus 347 ~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~ 407 (635)
T PRK11147 347 KIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEG 407 (635)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhh
Confidence 479999999999999999999998863 2322 36899999752 2 4677777653
No 297
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.42 E-value=3e-13 Score=70.86 Aligned_cols=52 Identities=23% Similarity=0.252 Sum_probs=37.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhc--ccC---CCCc--------EEEEEecCCccH---HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLR--QEK---IFDE--------VGIATVSQDPDI---IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~--~~~---~~~~--------~~~~~v~q~~~~---~~v~~~i~~ 52 (79)
+++|+|+||||||||+++|+|+.+ ++. .+++ ..++|++|++.. .++.+++..
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~ 102 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRF 102 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHH
Confidence 478999999999999999999753 331 2222 358899998643 467777654
No 298
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.42 E-value=1.5e-12 Score=70.57 Aligned_cols=53 Identities=21% Similarity=0.250 Sum_probs=37.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhc--c---c-C--CCC--------------cEEEEEecCCccH--HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLR--Q---E-K--IFD--------------EVGIATVSQDPDI--IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~--~---~-~--~~~--------------~~~~~~v~q~~~~--~~v~~~i~~~ 53 (79)
+++|+|+||+|||||+++|+|+.. + + . .++ ...++|+||++.. .++.+++...
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~ 107 (250)
T PRK14266 31 VTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYG 107 (250)
T ss_pred EEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCcchHHHHHHhH
Confidence 478999999999999999999863 2 2 1 111 1258999999643 3677776543
No 299
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.42 E-value=1e-12 Score=71.97 Aligned_cols=53 Identities=19% Similarity=0.186 Sum_probs=38.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc-----c-C--CCC--------------cEEEEEecCCccH--HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ-----E-K--IFD--------------EVGIATVSQDPDI--IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~-----~-~--~~~--------------~~~~~~v~q~~~~--~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+.++ . . .++ ...++|++|++.. .++.+++...
T Consensus 53 ~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~ 129 (272)
T PRK14236 53 VTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYG 129 (272)
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcccHHHHHHHH
Confidence 4789999999999999999999763 2 1 111 2358899998643 3677777543
No 300
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.42 E-value=3.1e-13 Score=71.63 Aligned_cols=55 Identities=29% Similarity=0.412 Sum_probs=43.0
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCcE------------EEEEecCCc-----cHHHHHHHHHHHhc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDEV------------GIATVSQDP-----DIIKVQGELAKSLG 55 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~~------------~~~~v~q~~-----~~~~v~~~i~~~~~ 55 (79)
++.|+|.||+|||||++.|.|.+.++. .+++. .++.||||| +.+++.+|+.....
T Consensus 34 FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~ 108 (263)
T COG1101 34 FVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAES 108 (263)
T ss_pred eEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHh
Confidence 578999999999999999999999882 22221 356799998 44789999877553
No 301
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.41 E-value=8.8e-13 Score=86.31 Aligned_cols=75 Identities=11% Similarity=0.073 Sum_probs=51.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-----------EEEEEecCCcc---HHHHHHHHHHHhcCC-CChhh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-----------VGIATVSQDPD---IIKVQGELAKSLGWA-LNEKD 62 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-----------~~~~~v~q~~~---~~~v~~~i~~~~~~~-~~~~~ 62 (79)
+++|+|+||||||||+++|+|+.+|+. .+++ +.+++++|++. ..++.+++....... ....+
T Consensus 958 i~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~ 1037 (2272)
T TIGR01257 958 ITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEE 1037 (2272)
T ss_pred EEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHH
Confidence 478999999999999999999998872 1221 35899999863 357888887644322 22223
Q ss_pred HHHHHHHHHHHHh
Q 044571 63 EKERADRLRLMFS 75 (79)
Q Consensus 63 ~~~~~~~l~~~l~ 75 (79)
..+++.++++.++
T Consensus 1038 ~~~~v~~lL~~vg 1050 (2272)
T TIGR01257 1038 AQLEMEAMLEDTG 1050 (2272)
T ss_pred HHHHHHHHHHHcC
Confidence 3345666666654
No 302
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.41 E-value=1.2e-12 Score=78.73 Aligned_cols=75 Identities=20% Similarity=0.220 Sum_probs=50.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC----------------cEEEEEecCCccH---HHHHHHHHHHhcC-C
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD----------------EVGIATVSQDPDI---IKVQGELAKSLGW-A 57 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~----------------~~~~~~v~q~~~~---~~v~~~i~~~~~~-~ 57 (79)
+++|+|+||||||||+++|+|+.+|+. .++ .+.++|+||++.. .++.+++...... .
T Consensus 36 ~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~ 115 (648)
T PRK10535 36 MVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAG 115 (648)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcC
Confidence 378999999999999999999998862 111 2358999999854 4677777653321 2
Q ss_pred CChhhHHHHHHHHHHHHh
Q 044571 58 LNEKDEKERADRLRLMFS 75 (79)
Q Consensus 58 ~~~~~~~~~~~~l~~~l~ 75 (79)
....+..+++.++++.++
T Consensus 116 ~~~~~~~~~~~~~l~~lg 133 (648)
T PRK10535 116 LERKQRLLRAQELLQRLG 133 (648)
T ss_pred CCHHHHHHHHHHHHHHCC
Confidence 222233345566666654
No 303
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.41 E-value=2.4e-13 Score=80.57 Aligned_cols=51 Identities=29% Similarity=0.450 Sum_probs=40.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH--HHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI--IKVQGELA 51 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~--~~v~~~i~ 51 (79)
.++|+|+||||||||+++|.|+++|+. .+++ ..+++++|++.+ .++.+|+.
T Consensus 343 ~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~ 410 (569)
T PRK10789 343 MLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIA 410 (569)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHh
Confidence 378999999999999999999998872 2222 358999999865 36777764
No 304
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.41 E-value=3.1e-13 Score=68.05 Aligned_cols=39 Identities=28% Similarity=0.452 Sum_probs=32.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-EEEEEecC
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-VGIATVSQ 39 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-~~~~~v~q 39 (79)
+++|+|+||+|||||+++|.|+.+|+. .+++ ..++|++|
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~ 70 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ 70 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc
Confidence 368999999999999999999998863 2333 46888988
No 305
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.41 E-value=7.5e-13 Score=84.89 Aligned_cols=52 Identities=15% Similarity=0.173 Sum_probs=42.0
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCcEEEEEecCCccH--HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDEVGIATVSQDPDI--IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~~~~~~v~q~~~~--~~v~~~i~~~ 53 (79)
+++|+||||||||||+++|.|+.+|.. .+++ .++|++|++.+ .++.+||...
T Consensus 454 ~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-~iayv~Q~~~l~~~Ti~eNI~~g 510 (1490)
T TIGR01271 454 LLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-RISFSPQTSWIMPGTIKDNIIFG 510 (1490)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-EEEEEeCCCccCCccHHHHHHhc
Confidence 378999999999999999999998873 2333 58999999854 3788888754
No 306
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.41 E-value=9.6e-13 Score=84.01 Aligned_cols=75 Identities=21% Similarity=0.256 Sum_probs=51.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhc---cc-C--CCCc--------EEEEEecCCcc---HHHHHHHHHHHhcCC----CC
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLR---QE-K--IFDE--------VGIATVSQDPD---IIKVQGELAKSLGWA----LN 59 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~---~~-~--~~~~--------~~~~~v~q~~~---~~~v~~~i~~~~~~~----~~ 59 (79)
+++|+||||||||||+++|.|..+ ++ . .+++ +.++||+|++. ..++.+++....... .+
T Consensus 791 ~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~ 870 (1394)
T TIGR00956 791 LTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVS 870 (1394)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCC
Confidence 478999999999999999999986 33 1 2222 35799999853 368888887654321 12
Q ss_pred hhhHHHHHHHHHHHHh
Q 044571 60 EKDEKERADRLRLMFS 75 (79)
Q Consensus 60 ~~~~~~~~~~l~~~l~ 75 (79)
..+..+.++++++.++
T Consensus 871 ~~~~~~~v~~~l~~l~ 886 (1394)
T TIGR00956 871 KSEKMEYVEEVIKLLE 886 (1394)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 2233446677777765
No 307
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.40 E-value=1.3e-12 Score=72.67 Aligned_cols=53 Identities=19% Similarity=0.264 Sum_probs=38.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhc-----ccC---CCC--------------cEEEEEecCCccH--HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLR-----QEK---IFD--------------EVGIATVSQDPDI--IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~-----~~~---~~~--------------~~~~~~v~q~~~~--~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+.+ |.. .++ ...++|++|++.+ .++.+++...
T Consensus 73 ~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~ 149 (305)
T PRK14264 73 VTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYG 149 (305)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCccccccHHHHHHhH
Confidence 478999999999999999999975 231 111 1358899999743 3677777643
No 308
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.40 E-value=5.7e-13 Score=78.00 Aligned_cols=52 Identities=23% Similarity=0.346 Sum_probs=38.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc-cC---CCCc-------------EEEEEecCCcc---H---HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ-EK---IFDE-------------VGIATVSQDPD---I---IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~-~~---~~~~-------------~~~~~v~q~~~---~---~~v~~~i~~ 52 (79)
+++|+|+||||||||+++|+|+.+| .. .+++ ..++|++|++. . .++.+++..
T Consensus 288 ~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~ 362 (500)
T TIGR02633 288 ILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITL 362 (500)
T ss_pred EEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcc
Confidence 4789999999999999999999974 31 1221 24799999952 2 466777654
No 309
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.40 E-value=1.6e-12 Score=70.45 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=38.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhc--c----cC--CCC--------------cEEEEEecCCccH--HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLR--Q----EK--IFD--------------EVGIATVSQDPDI--IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~--~----~~--~~~--------------~~~~~~v~q~~~~--~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+.+ | .. .++ ...++|++|++.. .++.+++...
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~ 109 (252)
T PRK14255 33 ITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYG 109 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCCCcHHHHHHHH
Confidence 479999999999999999999864 3 11 111 1258899998643 4677777644
No 310
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.39 E-value=4.3e-13 Score=79.18 Aligned_cols=51 Identities=25% Similarity=0.274 Sum_probs=40.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH--HHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI--IKVQGELA 51 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~--~~v~~~i~ 51 (79)
.++|+|+||||||||++++.|+++|+. .+++ +.+++++|++.. .++.+|+.
T Consensus 346 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~ 413 (544)
T TIGR01842 346 ALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIA 413 (544)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHh
Confidence 378999999999999999999998872 2222 358999999855 36777775
No 311
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.39 E-value=9.2e-13 Score=69.35 Aligned_cols=43 Identities=16% Similarity=0.280 Sum_probs=32.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC------------CC---------CcEEEEEecCCccH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK------------IF---------DEVGIATVSQDPDI 43 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~------------~~---------~~~~~~~v~q~~~~ 43 (79)
+++|+||||+|||||+++|+++.++.. .+ ....++++||+++.
T Consensus 24 ~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~ 87 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDG 87 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCC
Confidence 478999999999999999999875430 01 12468999998854
No 312
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.39 E-value=8.3e-13 Score=84.56 Aligned_cols=25 Identities=16% Similarity=0.213 Sum_probs=23.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ 25 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~ 25 (79)
.+||+|+|||||||++++|.|++.|
T Consensus 1196 ~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1196 TTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCC
Confidence 3799999999999999999999987
No 313
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.39 E-value=5.2e-13 Score=72.65 Aligned_cols=43 Identities=21% Similarity=0.287 Sum_probs=33.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC------------cEEEEEecCCccH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD------------EVGIATVSQDPDI 43 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~------------~~~~~~v~q~~~~ 43 (79)
+++|+|+||+|||||+++|+|+++|.. .++ ...++|++|++..
T Consensus 49 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l 106 (257)
T cd03288 49 KVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPIL 106 (257)
T ss_pred EEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcc
Confidence 478999999999999999999988762 122 1357999999744
No 314
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.39 E-value=2.1e-12 Score=73.77 Aligned_cols=75 Identities=25% Similarity=0.271 Sum_probs=58.0
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc--------CCCC----------------cEEEEEecCCc-----cHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE--------KIFD----------------EVGIATVSQDP-----DIIKVQGELA 51 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~--------~~~~----------------~~~~~~v~q~~-----~~~~v~~~i~ 51 (79)
.+|+||+||||||..+..++++++.. ..|+ +..++++||+| ++.++.+++.
T Consensus 38 tlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~ 117 (534)
T COG4172 38 TLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLA 117 (534)
T ss_pred EEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHH
Confidence 37899999999999999999998763 1233 24799999998 4568889999
Q ss_pred HHhcC--CCChhhHHHHHHHHHHHHh
Q 044571 52 KSLGW--ALNEKDEKERADRLRLMFS 75 (79)
Q Consensus 52 ~~~~~--~~~~~~~~~~~~~l~~~l~ 75 (79)
+.+.. +.......+++.++++.++
T Consensus 118 E~l~~Hrg~~~~~Ar~r~lelL~~Vg 143 (534)
T COG4172 118 EVLRLHRGLSRAAARARALELLELVG 143 (534)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHcC
Confidence 87753 4455566677888888775
No 315
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.39 E-value=1.5e-12 Score=78.69 Aligned_cols=51 Identities=22% Similarity=0.354 Sum_probs=40.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH--HHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI--IKVQGELA 51 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~--~~v~~~i~ 51 (79)
.++|+|+||||||||+++|.|+++|+. .+++ ..+++|+|++.+ .++.+|+.
T Consensus 485 ~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~ 552 (694)
T TIGR01846 485 FIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIA 552 (694)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHh
Confidence 378999999999999999999998872 2332 257899999865 46777764
No 316
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.39 E-value=9.1e-13 Score=78.41 Aligned_cols=52 Identities=27% Similarity=0.344 Sum_probs=40.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH--HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI--IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~--~~v~~~i~~ 52 (79)
.++|+|+||||||||+++|.|+.+|+. .+++ ..+++++|++.. .++.+|+..
T Consensus 363 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~ 431 (585)
T TIGR01192 363 TVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRL 431 (585)
T ss_pred EEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhc
Confidence 378999999999999999999998872 2222 358999999855 366677643
No 317
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.39 E-value=7.4e-13 Score=77.90 Aligned_cols=42 Identities=24% Similarity=0.292 Sum_probs=34.1
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhcccC----CCCcEEEEEecCCccH
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQEK----IFDEVGIATVSQDPDI 43 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~~----~~~~~~~~~v~q~~~~ 43 (79)
+||+||||+|||||+|.|.|...|.. .-....++|+.|+.+.
T Consensus 351 iaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~ 396 (530)
T COG0488 351 IAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDE 396 (530)
T ss_pred EEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhh
Confidence 79999999999999999999887762 1223579999998743
No 318
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.38 E-value=8.6e-13 Score=72.48 Aligned_cols=50 Identities=26% Similarity=0.270 Sum_probs=37.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC--CCCc------------EEEEEecCCccHH--HHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK--IFDE------------VGIATVSQDPDII--KVQGEL 50 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~--~~~~------------~~~~~v~q~~~~~--~v~~~i 50 (79)
+++|+|+||+|||||+++|+|+++... .+++ ..++|+||++.+. ++.+|+
T Consensus 32 ~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~nl 97 (275)
T cd03289 32 RVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNL 97 (275)
T ss_pred EEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHHh
Confidence 479999999999999999999987431 2222 2589999998653 555555
No 319
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.38 E-value=2.9e-12 Score=69.46 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=20.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQ 22 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~ 22 (79)
+++|+|+||||||||+++|+|+
T Consensus 35 ~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 35 IHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 4789999999999999999997
No 320
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.37 E-value=5.9e-13 Score=79.86 Aligned_cols=41 Identities=29% Similarity=0.415 Sum_probs=32.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-EEEEEecCCc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-VGIATVSQDP 41 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-~~~~~v~q~~ 41 (79)
++||+|+||||||||+++|+|.++|+. .+++ ..++|++|+.
T Consensus 29 ~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~ 73 (638)
T PRK10636 29 KVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQET 73 (638)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCC
Confidence 479999999999999999999988863 2332 2477888853
No 321
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.37 E-value=7.5e-13 Score=85.02 Aligned_cols=51 Identities=16% Similarity=0.183 Sum_probs=41.0
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCcEEEEEecCCccH--HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDEVGIATVSQDPDI--IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~~~~~~v~q~~~~--~~v~~~i~~ 52 (79)
+++|+|+||||||||+++|.|+++|.. .+++ .++|++|++.. .++.+||..
T Consensus 666 ~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-~i~yv~Q~~~l~~~Ti~eNI~~ 721 (1522)
T TIGR00957 666 LVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-SVAYVPQQAWIQNDSLRENILF 721 (1522)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-EEEEEcCCccccCCcHHHHhhc
Confidence 378999999999999999999998873 2333 58999999754 477788764
No 322
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.37 E-value=2.6e-12 Score=72.08 Aligned_cols=53 Identities=21% Similarity=0.228 Sum_probs=39.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc-----c-C--CCC--------------cEEEEEecCCccH--HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ-----E-K--IFD--------------EVGIATVSQDPDI--IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~-----~-~--~~~--------------~~~~~~v~q~~~~--~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+.++ . . .++ ...++|+||++.. .++.+|+...
T Consensus 110 ~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~ 186 (329)
T PRK14257 110 VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYG 186 (329)
T ss_pred EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHHHhH
Confidence 4799999999999999999999853 2 1 111 2358999999754 4777888643
No 323
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.37 E-value=3.9e-13 Score=71.46 Aligned_cols=53 Identities=11% Similarity=0.093 Sum_probs=35.5
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC-C---CCcEEEEEecCCc---cHHHHHHHHHHHh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK-I---FDEVGIATVSQDP---DIIKVQGELAKSL 54 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~-~---~~~~~~~~v~q~~---~~~~v~~~i~~~~ 54 (79)
+++|+||||||||||+++|+|+.+|+. . +++..+ .+.+++ +..++.+++....
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-~~~~~~~l~~~ltv~enl~~~~ 74 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-PLGANSFILPGLTGEENARMMA 74 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-ccccccccCCcCcHHHHHHHHH
Confidence 478999999999999999999998873 1 222221 222222 3356777776543
No 324
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1.8e-12 Score=69.11 Aligned_cols=42 Identities=31% Similarity=0.364 Sum_probs=31.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc-----CCCCcE-------------EEEEecCCcc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE-----KIFDEV-------------GIATVSQDPD 42 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~-----~~~~~~-------------~~~~v~q~~~ 42 (79)
+.+|+||||||||||++.|+|..... ..|++. .+...||.|.
T Consensus 32 vhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ 91 (251)
T COG0396 32 VHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPV 91 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCc
Confidence 46899999999999999999987544 134432 3567888873
No 325
>PTZ00243 ABC transporter; Provisional
Probab=99.36 E-value=1.3e-12 Score=84.06 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=40.1
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccHH--HHHHHH
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDII--KVQGEL 50 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~~--~v~~~i 50 (79)
+||+|++|||||||+++|.|+++|+. .+++ ..+++|||++.+. ++.+||
T Consensus 1339 VaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNI 1404 (1560)
T PTZ00243 1339 VGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNV 1404 (1560)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHh
Confidence 79999999999999999999998872 2332 3689999998664 677777
No 326
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.36 E-value=9.1e-13 Score=71.51 Aligned_cols=27 Identities=30% Similarity=0.319 Sum_probs=25.0
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK 27 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~ 27 (79)
++||+|+|||||||+.|+|.++++|+.
T Consensus 41 ~~glVGESG~GKSTlgr~i~~L~~pt~ 67 (268)
T COG4608 41 TLGLVGESGCGKSTLGRLILGLEEPTS 67 (268)
T ss_pred EEEEEecCCCCHHHHHHHHHcCcCCCC
Confidence 479999999999999999999999983
No 327
>PLN03130 ABC transporter C family member; Provisional
Probab=99.36 E-value=1.6e-12 Score=83.90 Aligned_cols=51 Identities=22% Similarity=0.333 Sum_probs=40.4
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccHH--HHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDII--KVQGELA 51 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~~--~v~~~i~ 51 (79)
.+||+|+||||||||+++|.++++|+. .+++ ..+++|+|+|.+. ++.+|+.
T Consensus 1267 kVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd 1334 (1622)
T PLN03130 1267 KVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLD 1334 (1622)
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhC
Confidence 379999999999999999999998872 2332 3689999998663 5666663
No 328
>PLN03232 ABC transporter C family member; Provisional
Probab=99.35 E-value=9.5e-13 Score=84.47 Aligned_cols=53 Identities=21% Similarity=0.143 Sum_probs=42.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC-CC--CcEEEEEecCCccH--HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK-IF--DEVGIATVSQDPDI--IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~-~~--~~~~~~~v~q~~~~--~~v~~~i~~~ 53 (79)
.++|+|++|||||||+++|.|+++|.. .. -...++||+|++-+ .++.+||...
T Consensus 645 ~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg 702 (1495)
T PLN03232 645 LVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFG 702 (1495)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcC
Confidence 378999999999999999999999863 11 12368999999866 4788888743
No 329
>PLN03232 ABC transporter C family member; Provisional
Probab=99.35 E-value=1.4e-12 Score=83.68 Aligned_cols=50 Identities=22% Similarity=0.359 Sum_probs=39.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccHH--HHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDII--KVQGEL 50 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~~--~v~~~i 50 (79)
.+||+|+||||||||+++|.|+++|+. .+++ ..+++|+|++.+. ++.+|+
T Consensus 1264 kvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL 1330 (1495)
T PLN03232 1264 KVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNI 1330 (1495)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHc
Confidence 379999999999999999999998872 2332 3589999998653 566665
No 330
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.34 E-value=5.8e-12 Score=74.11 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=24.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
+++|+|+||+|||||+++|+|+.+|+
T Consensus 52 ivgIiGpNGSGKSTLLkiLaGLl~P~ 77 (549)
T PRK13545 52 IVGIIGLNGSGKSTLSNLIAGVTMPN 77 (549)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCC
Confidence 47899999999999999999999886
No 331
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.34 E-value=1.1e-12 Score=77.53 Aligned_cols=43 Identities=23% Similarity=0.240 Sum_probs=34.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI 43 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~ 43 (79)
.++|+|+||||||||+++|.|+++|+. .+++ ..+++++|++.+
T Consensus 351 ~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 408 (547)
T PRK10522 351 LLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHL 408 (547)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhH
Confidence 378999999999999999999998872 1221 358999999754
No 332
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.34 E-value=7.9e-13 Score=68.56 Aligned_cols=50 Identities=26% Similarity=0.342 Sum_probs=36.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCC--------------cEEEEEecCCccH---HHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFD--------------EVGIATVSQDPDI---IKVQGEL 50 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~--------------~~~~~~v~q~~~~---~~v~~~i 50 (79)
+++|+|+||+|||||+++|+|+.+++. .++ ...++|++|++.. .++.+++
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l 97 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENI 97 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHhe
Confidence 478999999999999999999988762 111 1357899998643 3455554
No 333
>PLN03140 ABC transporter G family member; Provisional
Probab=99.33 E-value=3.3e-12 Score=81.87 Aligned_cols=75 Identities=19% Similarity=0.176 Sum_probs=49.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc---cC--CCCc---------EEEEEecCCcc---HHHHHHHHHHHhcCC----CC
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ---EK--IFDE---------VGIATVSQDPD---IIKVQGELAKSLGWA----LN 59 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~---~~--~~~~---------~~~~~v~q~~~---~~~v~~~i~~~~~~~----~~ 59 (79)
+++|+||||||||||+++|+|..++ +. .+++ +.++|++|+.. ..++.+++....... .+
T Consensus 908 l~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~ 987 (1470)
T PLN03140 908 LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVS 987 (1470)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCC
Confidence 4789999999999999999998653 11 1211 34799999863 368889887654221 12
Q ss_pred hhhHHHHHHHHHHHHh
Q 044571 60 EKDEKERADRLRLMFS 75 (79)
Q Consensus 60 ~~~~~~~~~~l~~~l~ 75 (79)
..+..+.++++++.++
T Consensus 988 ~~~~~~~v~~vl~~lg 1003 (1470)
T PLN03140 988 KEEKMMFVDEVMELVE 1003 (1470)
T ss_pred HHHHHHHHHHHHHHCC
Confidence 2223345667777665
No 334
>PLN03130 ABC transporter C family member; Provisional
Probab=99.33 E-value=1.8e-12 Score=83.66 Aligned_cols=52 Identities=21% Similarity=0.164 Sum_probs=41.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC-C-C-CcEEEEEecCCccH--HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK-I-F-DEVGIATVSQDPDI--IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~-~-~-~~~~~~~v~q~~~~--~~v~~~i~~ 52 (79)
.++|+|++|||||||+++|.|.+++.. . + -...++||+|++-+ .++.+||..
T Consensus 645 ~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~f 701 (1622)
T PLN03130 645 LVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILF 701 (1622)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhC
Confidence 378999999999999999999998864 1 1 12368999999855 478888874
No 335
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.33 E-value=9.1e-13 Score=71.71 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=24.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
+++|+|+||||||||+++|+|+++|+
T Consensus 28 ~~~IvG~nGsGKSTLlk~l~Gl~~p~ 53 (255)
T cd03236 28 VLGLVGPNGIGKSTALKILAGKLKPN 53 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 47999999999999999999999886
No 336
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.33 E-value=2.4e-12 Score=80.60 Aligned_cols=52 Identities=25% Similarity=0.354 Sum_probs=40.5
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH--HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI--IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~--~~v~~~i~~ 52 (79)
.++|||+|||||||++++|.+++.|+. ..++ ..++.|+|+|-+ .++.+||..
T Consensus 381 ~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~ 449 (1228)
T KOG0055|consen 381 TVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRY 449 (1228)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhc
Confidence 379999999999999999999999972 2222 268999999854 366677653
No 337
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.32 E-value=2.4e-12 Score=76.25 Aligned_cols=43 Identities=19% Similarity=0.222 Sum_probs=34.5
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI 43 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~ 43 (79)
.++|+||||||||||+++|.|+++|+. .+++ ..+++++|++.+
T Consensus 370 ~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~l 427 (555)
T TIGR01194 370 IVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHL 427 (555)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhh
Confidence 378999999999999999999998872 1222 357899999754
No 338
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.32 E-value=8.4e-13 Score=68.40 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=24.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
+.||+|+||||||||+++|.+.+.|+
T Consensus 34 VLgiVGESGSGKtTLL~~is~rl~p~ 59 (258)
T COG4107 34 VLGIVGESGSGKTTLLKCISGRLTPD 59 (258)
T ss_pred EEEEEecCCCcHHhHHHHHhcccCCC
Confidence 47899999999999999999999887
No 339
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.32 E-value=1.7e-12 Score=83.21 Aligned_cols=53 Identities=26% Similarity=0.375 Sum_probs=41.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CC-Cc------------EEEEEecCCccH--HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IF-DE------------VGIATVSQDPDI--IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~-~~------------~~~~~v~q~~~~--~~v~~~i~~~ 53 (79)
+++|+||||||||||+++|.|+++|+. .+ ++ ..+++|+|++.+ .++.+|+...
T Consensus 413 ~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g 483 (1466)
T PTZ00265 413 TYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYS 483 (1466)
T ss_pred EEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhc
Confidence 479999999999999999999998872 23 21 248999999855 3788887653
No 340
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.32 E-value=1.2e-12 Score=67.05 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=24.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
+++|+|+||+|||||+++|+|+.+|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~~~ 53 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYKPD 53 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 47899999999999999999999886
No 341
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.31 E-value=2e-12 Score=77.57 Aligned_cols=41 Identities=27% Similarity=0.473 Sum_probs=31.4
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-EEEEEecCCc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-VGIATVSQDP 41 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-~~~~~v~q~~ 41 (79)
+++|+|+||||||||+++|+|+++|+. .+++ ..+++++|++
T Consensus 31 ~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~ 75 (635)
T PRK11147 31 RVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDP 75 (635)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCC
Confidence 479999999999999999999998863 2222 2356777754
No 342
>PTZ00243 ABC transporter; Provisional
Probab=99.31 E-value=3.5e-12 Score=82.19 Aligned_cols=52 Identities=27% Similarity=0.302 Sum_probs=40.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC-C-CCcEEEEEecCCccH--HHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK-I-FDEVGIATVSQDPDI--IKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~-~-~~~~~~~~v~q~~~~--~~v~~~i~~ 52 (79)
+++|+|+||||||||+++|.|+++|+. . .-...++|++|++.+ .++.+|+..
T Consensus 688 ~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~ 743 (1560)
T PTZ00243 688 LTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILF 743 (1560)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHc
Confidence 378999999999999999999998863 1 112468999999754 367777764
No 343
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.31 E-value=1.7e-12 Score=70.14 Aligned_cols=42 Identities=24% Similarity=0.273 Sum_probs=31.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhh--cccC---CCCc-------------EEEEEecCCcc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQL--RQEK---IFDE-------------VGIATVSQDPD 42 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~--~~~~---~~~~-------------~~~~~v~q~~~ 42 (79)
+++|+|+||||||||+++|+|+. +|+. .+++ ..++|++|++.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 88 (248)
T PRK09580 29 VHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPV 88 (248)
T ss_pred EEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCch
Confidence 47899999999999999999995 4541 1111 24789999864
No 344
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.30 E-value=8.4e-12 Score=78.27 Aligned_cols=52 Identities=25% Similarity=0.312 Sum_probs=43.2
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH--HHHHHHHHHH
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI--IKVQGELAKS 53 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~--~~v~~~i~~~ 53 (79)
+||||||||||||.+.+|-+.+.|.. ..|+ ..++.|+|+|.+ .++.+||...
T Consensus 1019 vALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG 1087 (1228)
T KOG0055|consen 1019 VALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYG 1087 (1228)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhcc
Confidence 79999999999999999999998872 2222 368999999977 4889998876
No 345
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.30 E-value=2e-12 Score=68.16 Aligned_cols=42 Identities=29% Similarity=0.385 Sum_probs=31.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhh--cccC---CCCc-------------EEEEEecCCcc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQL--RQEK---IFDE-------------VGIATVSQDPD 42 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~--~~~~---~~~~-------------~~~~~v~q~~~ 42 (79)
+++|+|+||+|||||+++|.|+. +|+. .+++ ..++|++|++.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~ 87 (200)
T cd03217 28 VHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPP 87 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChh
Confidence 47899999999999999999994 4541 1111 23889999864
No 346
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.29 E-value=1.9e-12 Score=75.71 Aligned_cols=41 Identities=15% Similarity=0.244 Sum_probs=32.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc-------------EEEEEecCCc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE-------------VGIATVSQDP 41 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~-------------~~~~~v~q~~ 41 (79)
+++|+|+||||||||+++|+|+.+|+. .+++ ..++|++|++
T Consensus 276 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~ 332 (491)
T PRK10982 276 ILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEER 332 (491)
T ss_pred EEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCch
Confidence 479999999999999999999998762 2222 1268899874
No 347
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.29 E-value=2.1e-12 Score=67.06 Aligned_cols=26 Identities=27% Similarity=0.463 Sum_probs=24.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
+++|+|+||+|||||+++|+|+.+|+
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~~~~~ 52 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGLLKPS 52 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 47899999999999999999999876
No 348
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.28 E-value=4.8e-11 Score=65.54 Aligned_cols=75 Identities=31% Similarity=0.465 Sum_probs=56.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccCCCCcEEEEEecCCccHHHHHHHHHHHhcCCC----ChhhHHHHHHHHHHHHh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEKIFDEVGIATVSQDPDIIKVQGELAKSLGWAL----NEKDEKERADRLRLMFS 75 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~~~~~~~~~~v~q~~~~~~v~~~i~~~~~~~~----~~~~~~~~~~~l~~~l~ 75 (79)
+++|+|++|+|||||++.++........|+...|..+....+...+.+.+...+.... ...+..+....+.+.+.
T Consensus 21 ~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~ 99 (287)
T PF00931_consen 21 VVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELLK 99 (287)
T ss_dssp EEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHHC
T ss_pred EEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhc
Confidence 4789999999999999999977555567888899999988877888888888886542 22344456666766665
No 349
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=5.5e-12 Score=73.72 Aligned_cols=50 Identities=22% Similarity=0.377 Sum_probs=36.9
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhcccC---CC--------Cc----EEEEEecCCccHH--HHHHHHH
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQEK---IF--------DE----VGIATVSQDPDII--KVQGELA 51 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~~---~~--------~~----~~~~~v~q~~~~~--~v~~~i~ 51 (79)
++|+|+|||||||+++.+.|..+|+. .+ +. ..+.++.|.+.+. ++.+|+.
T Consensus 367 vAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~ 433 (573)
T COG4987 367 VAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLR 433 (573)
T ss_pred EEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHh
Confidence 79999999999999999999888872 11 11 1466788877653 5666654
No 350
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.28 E-value=1e-11 Score=79.84 Aligned_cols=49 Identities=27% Similarity=0.295 Sum_probs=38.5
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhcccC--CCCc------------EEEEEecCCccHH--HHHHHH
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQEK--IFDE------------VGIATVSQDPDII--KVQGEL 50 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~~--~~~~------------~~~~~v~q~~~~~--~v~~~i 50 (79)
+||+|+||||||||+++|.|+++... .+++ ..+++|||+|.+. ++.+|+
T Consensus 1248 vaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NL 1312 (1490)
T TIGR01271 1248 VGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNL 1312 (1490)
T ss_pred EEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHh
Confidence 79999999999999999999986431 2222 3689999998663 677776
No 351
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.27 E-value=5.5e-12 Score=81.18 Aligned_cols=50 Identities=24% Similarity=0.321 Sum_probs=39.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccHH--HHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDII--KVQGEL 50 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~~--~v~~~i 50 (79)
.+||+|++|||||||+++|.++++|+. .+++ ..+++|+|+|.+. ++.+|+
T Consensus 1314 kiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NL 1380 (1522)
T TIGR00957 1314 KVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNL 1380 (1522)
T ss_pred EEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHc
Confidence 379999999999999999999998872 2333 3689999998653 566666
No 352
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.26 E-value=3.3e-12 Score=74.71 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=24.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
+++|+|+||||||||+++|+|+++|+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G~~~p~ 56 (490)
T PRK10938 31 SWAFVGANGSGKSALARALAGELPLL 56 (490)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCC
Confidence 47899999999999999999999886
No 353
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.25 E-value=6.4e-12 Score=68.65 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=24.5
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
+++++|+||+||||++|+++|++.|+
T Consensus 52 ivgflGaNGAGKSTtLKmLTGll~p~ 77 (325)
T COG4586 52 IVGFLGANGAGKSTTLKMLTGLLLPT 77 (325)
T ss_pred EEEEEcCCCCcchhhHHHHhCccccC
Confidence 47899999999999999999999997
No 354
>PRK13409 putative ATPase RIL; Provisional
Probab=99.24 E-value=4.4e-12 Score=75.63 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=24.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
++||+||||+|||||+++|+|+++|+
T Consensus 101 v~gLvG~NGaGKSTLlkiL~G~l~p~ 126 (590)
T PRK13409 101 VTGILGPNGIGKTTAVKILSGELIPN 126 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhCCccCC
Confidence 47999999999999999999999886
No 355
>PLN03140 ABC transporter G family member; Provisional
Probab=99.24 E-value=1.9e-11 Score=78.58 Aligned_cols=54 Identities=28% Similarity=0.311 Sum_probs=41.5
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc---C---CCCc---------EEEEEecCCc---cHHHHHHHHHHHh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE---K---IFDE---------VGIATVSQDP---DIIKVQGELAKSL 54 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~---~---~~~~---------~~~~~v~q~~---~~~~v~~~i~~~~ 54 (79)
+++|+||||||||||+++|+|..+++ . .+++ +.++|++|+. +.+++.+++....
T Consensus 193 ~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a 264 (1470)
T PLN03140 193 MTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSA 264 (1470)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHH
Confidence 47899999999999999999998764 1 1222 3579999985 3368889887654
No 356
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.23 E-value=2.9e-11 Score=77.52 Aligned_cols=54 Identities=13% Similarity=0.118 Sum_probs=39.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhc----cc---CCCCc-----------EEEEEecCCc---cHHHHHHHHHHHh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLR----QE---KIFDE-----------VGIATVSQDP---DIIKVQGELAKSL 54 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~----~~---~~~~~-----------~~~~~v~q~~---~~~~v~~~i~~~~ 54 (79)
+++|+||||||||||+|+|.|... +. ..+++ ..++|++|+. +..++.+++....
T Consensus 89 ~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~ 163 (1394)
T TIGR00956 89 LTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAA 163 (1394)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHH
Confidence 478999999999999999999862 22 11221 2479999985 3368888887654
No 357
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=8.9e-12 Score=64.82 Aligned_cols=25 Identities=32% Similarity=0.419 Sum_probs=23.4
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
+-|.||||+|||||+|+|.|+.+|+
T Consensus 31 ~~i~G~NG~GKTtLLRilaGLl~p~ 55 (209)
T COG4133 31 LQITGPNGAGKTTLLRILAGLLRPD 55 (209)
T ss_pred EEEECCCCCcHHHHHHHHHcccCCC
Confidence 4689999999999999999999997
No 358
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.22 E-value=1.7e-11 Score=58.83 Aligned_cols=52 Identities=19% Similarity=-0.022 Sum_probs=32.5
Q ss_pred CeeEEcCCCCcHHHHHHHHHh-hhccc--------CCCCcEEEEEecCCccHHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGN-QLRQE--------KIFDEVGIATVSQDPDIIKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g-~~~~~--------~~~~~~~~~~v~q~~~~~~v~~~i~~ 52 (79)
+++|+||||||||||++++.. ..... ..-..+..++++|+.-..++.+||..
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~~G~i~~~g~di~~~~~~~~~~~~~~~~q~lf~~ti~~Ni~~ 77 (107)
T cd00820 17 GVLITGDSGIGKTELALELIKRKHRLVGDDNVEIREDSKDELIGRNPELGLEIRLRLNIFL 77 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhhCCeEEEeeEeHHHhhhhhcCCEEEEechhcchhhHHhhcee
Confidence 368999999999999999861 00000 00112346777777333567777655
No 359
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.22 E-value=7.6e-12 Score=73.27 Aligned_cols=50 Identities=22% Similarity=0.237 Sum_probs=37.4
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCcE------------EEEEecCCccH--HHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDEV------------GIATVSQDPDI--IKVQGEL 50 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~~------------~~~~v~q~~~~--~~v~~~i 50 (79)
.+|++||||+||||++|.+.+....+. .+|+. .++.||||.-+ .++..||
T Consensus 566 tvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNI 632 (790)
T KOG0056|consen 566 TVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNI 632 (790)
T ss_pred EEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeehe
Confidence 378999999999999999999987762 34432 58999999643 2444444
No 360
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.21 E-value=6.1e-12 Score=66.05 Aligned_cols=74 Identities=28% Similarity=0.434 Sum_probs=51.9
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhcccC---CCCc--------------EEEEEecCCccH---HHHHHHHHHHhcCCC---
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQEK---IFDE--------------VGIATVSQDPDI---IKVQGELAKSLGWAL--- 58 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~--------------~~~~~v~q~~~~---~~v~~~i~~~~~~~~--- 58 (79)
.+|+||||+||||++-.|+|.-+|+. .|++ ..++--||.|.. .++++|+......+.
T Consensus 34 r~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~ 113 (249)
T COG4674 34 RVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVF 113 (249)
T ss_pred EEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchH
Confidence 46999999999999999999999872 3433 247778888744 588999887764321
Q ss_pred ------ChhhHHHHHHHHHHHHh
Q 044571 59 ------NEKDEKERADRLRLMFS 75 (79)
Q Consensus 59 ------~~~~~~~~~~~l~~~l~ 75 (79)
...+...+++++++..+
T Consensus 114 a~L~~r~~~~e~~ride~La~ig 136 (249)
T COG4674 114 ASLFARLRAEERRRIDELLATIG 136 (249)
T ss_pred HHhhhhcChhHHHHHHHHHHHcc
Confidence 11223346677776654
No 361
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.21 E-value=1.4e-10 Score=63.04 Aligned_cols=49 Identities=16% Similarity=0.173 Sum_probs=40.5
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhcccCCCCcEEEEEecCCc--cHHHHHHHHH
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQEKIFDEVGIATVSQDP--DIIKVQGELA 51 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~~~~~~~~~~~v~q~~--~~~~v~~~i~ 51 (79)
++|+|++|+|||||++.+++..... .|+...|.++.++. +...+++.+.
T Consensus 19 ~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~ 69 (249)
T cd01128 19 GLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVK 69 (249)
T ss_pred EEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhc
Confidence 5799999999999999999988765 67788899988884 5566777763
No 362
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.20 E-value=1.3e-11 Score=64.10 Aligned_cols=21 Identities=33% Similarity=0.241 Sum_probs=18.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHh
Q 044571 1 MEGLYGISCVGKTTLANFVGN 21 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g 21 (79)
+++|+||||||||||++++.+
T Consensus 23 ~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 478999999999999999963
No 363
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.19 E-value=1.4e-11 Score=62.71 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=23.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
+++|+|+||+|||||+++|.|.+++.
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~~~~ 52 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLLKPT 52 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 36899999999999999999998875
No 364
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.19 E-value=2e-11 Score=64.63 Aligned_cols=25 Identities=40% Similarity=0.397 Sum_probs=22.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ 25 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~ 25 (79)
+++|+|+||||||||++.|.+.+++
T Consensus 8 vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 8 IIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4799999999999999999998764
No 365
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=1.3e-11 Score=67.42 Aligned_cols=53 Identities=23% Similarity=0.252 Sum_probs=38.0
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc-----c-C--CCC----------------cEEEEEecCCccH--HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ-----E-K--IFD----------------EVGIATVSQDPDI--IKVQGELAKS 53 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~-----~-~--~~~----------------~~~~~~v~q~~~~--~~v~~~i~~~ 53 (79)
+++|+|+||||||||+++|+|+.+| + . .++ ...++|++|++.. .++.+++...
T Consensus 44 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~ 122 (265)
T PRK14252 44 VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYG 122 (265)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcchHHHHHHhH
Confidence 4789999999999999999999764 2 0 111 1247899998632 3667776543
No 366
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.19 E-value=4e-11 Score=74.27 Aligned_cols=75 Identities=16% Similarity=0.185 Sum_probs=52.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CC-------------CcEEEEEecCCccH---HHHHHHHHHHhcC-CCCh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IF-------------DEVGIATVSQDPDI---IKVQGELAKSLGW-ALNE 60 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~-------------~~~~~~~v~q~~~~---~~v~~~i~~~~~~-~~~~ 60 (79)
+.|+.|+||+||||++++++|+.+|+. .. -...+||+||...+ ++..+.+...... +.+.
T Consensus 593 cfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~ 672 (885)
T KOG0059|consen 593 CFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPR 672 (885)
T ss_pred eEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCCh
Confidence 468999999999999999999999982 11 01348999998533 5666666554432 3344
Q ss_pred hhHHHHHHHHHHHHh
Q 044571 61 KDEKERADRLRLMFS 75 (79)
Q Consensus 61 ~~~~~~~~~l~~~l~ 75 (79)
.+..+.++.+++.++
T Consensus 673 ~di~~~v~~ll~~~~ 687 (885)
T KOG0059|consen 673 SDIGSAIEKLLRLVG 687 (885)
T ss_pred hHHHHHHHHHHHHcC
Confidence 555566777777765
No 367
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.18 E-value=2.4e-11 Score=71.28 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=23.9
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
+++|||||+|||||+|+++|++.|.
T Consensus 419 vAlVGPNG~GKsTLlKl~~gdl~p~ 443 (614)
T KOG0927|consen 419 VALVGPNGAGKSTLLKLITGDLQPT 443 (614)
T ss_pred eeEecCCCCchhhhHHHHhhccccc
Confidence 6899999999999999999999987
No 368
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.18 E-value=8.6e-11 Score=63.27 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=23.4
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
.+|+|+||||||||++++++..+|.
T Consensus 60 W~I~G~NGsGKTTLL~ll~~~~~ps 84 (257)
T COG1119 60 WAIVGPNGAGKTTLLSLLTGEHPPS 84 (257)
T ss_pred EEEECCCCCCHHHHHHHHhcccCCC
Confidence 4799999999999999999999986
No 369
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.17 E-value=5.4e-11 Score=75.23 Aligned_cols=77 Identities=19% Similarity=0.227 Sum_probs=53.3
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhccc-----CCC---------CcEEEEEecCCc---cHHHHHHHHHHHhcCC----CCh
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQE-----KIF---------DEVGIATVSQDP---DIIKVQGELAKSLGWA----LNE 60 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~-----~~~---------~~~~~~~v~q~~---~~~~v~~~i~~~~~~~----~~~ 60 (79)
.|++|+||+|||||+++|.+....- ..+ ..+..|||.|+. +..+|.+.+....... .+.
T Consensus 820 TALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~ 899 (1391)
T KOG0065|consen 820 TALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSD 899 (1391)
T ss_pred eehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCH
Confidence 5899999999999999999874221 011 135789999986 3468888887765332 223
Q ss_pred hhHHHHHHHHHHHHh-hhc
Q 044571 61 KDEKERADRLRLMFS-ERY 78 (79)
Q Consensus 61 ~~~~~~~~~l~~~l~-~~~ 78 (79)
++..+.++++++.|+ +.|
T Consensus 900 ~ek~~yVe~Vi~lleL~~~ 918 (1391)
T KOG0065|consen 900 EEKYEYVEEVIELLELKEY 918 (1391)
T ss_pred HHHHHHHHHHHHHhCchhh
Confidence 333457888888887 654
No 370
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.16 E-value=1.9e-11 Score=71.57 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=22.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ 25 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~ 25 (79)
+++|+||||||||||+++|+|+.++
T Consensus 288 ~~~i~G~NGsGKSTLl~~l~G~~~~ 312 (490)
T PRK10938 288 HWQIVGPNGAGKSTLLSLITGDHPQ 312 (490)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCc
Confidence 4789999999999999999998764
No 371
>PLN03073 ABC transporter F family; Provisional
Probab=99.16 E-value=4.9e-11 Score=72.55 Aligned_cols=39 Identities=28% Similarity=0.350 Sum_probs=27.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccCCCCcEEEEEecCC
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEKIFDEVGIATVSQD 40 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~~~~~~~~~~v~q~ 40 (79)
++||+|+||||||||+++|+|... ...-..-.+.++.|+
T Consensus 205 ~~gLvG~NGsGKSTLLr~l~g~~~-~g~p~~g~I~~~~Q~ 243 (718)
T PLN03073 205 HYGLVGRNGTGKTTFLRYMAMHAI-DGIPKNCQILHVEQE 243 (718)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC-CCCCCCCEEEEEecc
Confidence 479999999999999999998641 111122346677775
No 372
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.15 E-value=3.6e-11 Score=65.30 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=22.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ 25 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~ 25 (79)
+.+|+||||||||||+++|++.+.+
T Consensus 27 ~~~IvG~NGsGKStll~Ai~~ll~~ 51 (251)
T cd03273 27 FNAITGLNGSGKSNILDAICFVLGI 51 (251)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3689999999999999999998754
No 373
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.15 E-value=4.1e-11 Score=64.67 Aligned_cols=22 Identities=14% Similarity=0.086 Sum_probs=19.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQ 22 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~ 22 (79)
+++|+||||||||||+++|++.
T Consensus 25 ~~~i~GpNGsGKStll~ai~~~ 46 (243)
T cd03272 25 HNVVVGRNGSGKSNFFAAIRFV 46 (243)
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999854
No 374
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.14 E-value=4.2e-11 Score=63.07 Aligned_cols=26 Identities=23% Similarity=0.496 Sum_probs=24.0
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
+.+|+||||+|||||+.++.++.+.+
T Consensus 29 iTs~IGPNGAGKSTLLS~~sRL~~~d 54 (252)
T COG4604 29 ITSIIGPNGAGKSTLLSMMSRLLKKD 54 (252)
T ss_pred eeEEECCCCccHHHHHHHHHHhcccc
Confidence 46899999999999999999999887
No 375
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.12 E-value=8.8e-11 Score=62.24 Aligned_cols=23 Identities=39% Similarity=0.460 Sum_probs=21.4
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQL 23 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~ 23 (79)
+++|.|+||||||||++.|.+.+
T Consensus 8 iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 8 IIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999986
No 376
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.11 E-value=6.3e-11 Score=62.55 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=21.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLR 24 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~ 24 (79)
+++|+||||+|||||+|+|.+...
T Consensus 27 ~~~ltGpNg~GKSTllr~i~~~~~ 50 (199)
T cd03283 27 GILITGSNMSGKSTFLRTIGVNVI 50 (199)
T ss_pred EEEEECCCCCChHHHHHHHHHHHH
Confidence 468999999999999999998663
No 377
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.10 E-value=8.1e-11 Score=62.99 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=22.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ 25 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~ 25 (79)
++||.|+|||||||+++.|.+.+.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 5899999999999999999998864
No 378
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.10 E-value=6.9e-11 Score=61.72 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=22.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
+++|+|||||||||+++.|.+...+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~~ 29 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQTQ 29 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCe
Confidence 37899999999999999999887553
No 379
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.10 E-value=9.4e-11 Score=61.66 Aligned_cols=23 Identities=43% Similarity=0.443 Sum_probs=21.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQL 23 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~ 23 (79)
++||+|+||||||||++.|.+.+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999986
No 380
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.09 E-value=7.6e-11 Score=62.76 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=18.6
Q ss_pred CeeEEcCCCCcHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVG 20 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~ 20 (79)
+++|+||||+||||++++|.
T Consensus 27 i~~ivGpNGaGKSTll~~i~ 46 (212)
T cd03274 27 FSAIVGPNGSGKSNVIDSML 46 (212)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999987
No 381
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=99.08 E-value=1.1e-10 Score=61.02 Aligned_cols=25 Identities=28% Similarity=0.167 Sum_probs=23.2
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
++|+|++||||||+++++.+.+++.
T Consensus 28 i~I~G~tGSGKTTll~aL~~~i~~~ 52 (186)
T cd01130 28 ILISGGTGSGKTTLLNALLAFIPPD 52 (186)
T ss_pred EEEECCCCCCHHHHHHHHHhhcCCC
Confidence 6899999999999999999998775
No 382
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.06 E-value=1.2e-10 Score=62.52 Aligned_cols=26 Identities=38% Similarity=0.621 Sum_probs=23.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
++||.|+||||||||++.|.+.+++.
T Consensus 35 iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 35 IVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 47999999999999999999998765
No 383
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.04 E-value=2e-10 Score=59.65 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=23.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
+++|+|+|||||||+++++.+++.+.
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~~~ 30 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFSAK 30 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 36899999999999999999987664
No 384
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.03 E-value=7.5e-10 Score=66.06 Aligned_cols=51 Identities=18% Similarity=0.149 Sum_probs=37.0
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhcccC---CC-CcEEEEEecCCccH--HHHHHHHHH
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQEK---IF-DEVGIATVSQDPDI--IKVQGELAK 52 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~~---~~-~~~~~~~v~q~~~~--~~v~~~i~~ 52 (79)
+-|.|+||||||||+|+|+|+.|.-. .+ ......|+||.|.. -++.+.+..
T Consensus 422 llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~Y 478 (604)
T COG4178 422 LLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCY 478 (604)
T ss_pred EEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhC
Confidence 35889999999999999999987652 12 24457899999844 345555443
No 385
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.03 E-value=2.8e-10 Score=62.65 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=23.5
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
++||+|+|||||||+++.|.+++++.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~ 26 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSD 26 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 58999999999999999999988654
No 386
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.03 E-value=2.4e-10 Score=72.91 Aligned_cols=53 Identities=19% Similarity=0.213 Sum_probs=41.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCcEEEEEecCCccH--HHHHHHHHHHh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDEVGIATVSQDPDI--IKVQGELAKSL 54 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~~~~~~v~q~~~~--~~v~~~i~~~~ 54 (79)
.+||+|+-|||||+|+.+|.|..+... ...+ .++|++|.|=. .++.+||+..-
T Consensus 549 lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g-siaYv~Q~pWI~ngTvreNILFG~ 606 (1381)
T KOG0054|consen 549 LVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG-SVAYVPQQPWIQNGTVRENILFGS 606 (1381)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcccccceEEEcC-eEEEeccccHhhCCcHHHhhhcCc
Confidence 379999999999999999999988753 1222 48999999833 47888987543
No 387
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=99.03 E-value=3.9e-10 Score=49.17 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=20.0
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhcc
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQ 25 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~ 25 (79)
..|+|+||+||||++.++.-.+-+
T Consensus 26 tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 26 TLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 578999999999999988665544
No 388
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.02 E-value=2.1e-10 Score=63.55 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=22.0
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLR 24 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~ 24 (79)
++||.|+|||||||++++|.+++.
T Consensus 64 IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 64 IISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999988875
No 389
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.01 E-value=1.6e-09 Score=62.36 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=23.6
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
+-|+|.|||||||+++.++|+.+|+
T Consensus 352 vFliG~NGsGKST~~~LLtGL~~Pq 376 (546)
T COG4615 352 VFLIGGNGSGKSTLAMLLTGLYQPQ 376 (546)
T ss_pred EEEECCCCCcHHHHHHHHhcccCCC
Confidence 5689999999999999999999998
No 390
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.01 E-value=4.9e-10 Score=66.19 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=31.8
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhcccC----CCCcEEEEEecCCcc
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQEK----IFDEVGIATVSQDPD 42 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~~----~~~~~~~~~v~q~~~ 42 (79)
+-|+||||||||+|+|++.|+.|... .-....+-|+||.|.
T Consensus 511 LLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPY 555 (728)
T KOG0064|consen 511 LLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPY 555 (728)
T ss_pred EEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCc
Confidence 35899999999999999999988752 112245888999873
No 391
>PRK07261 topology modulation protein; Provisional
Probab=99.01 E-value=2.2e-09 Score=55.57 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=20.8
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhcc
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQ 25 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~ 25 (79)
+.|+|++|||||||++.|......
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~ 26 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNC 26 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCC
Confidence 689999999999999999876543
No 392
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.01 E-value=2.7e-10 Score=60.33 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=21.8
Q ss_pred CeeEEcCCCCcHHHHHHHHH----hhhccc
Q 044571 1 MEGLYGISCVGKTTLANFVG----NQLRQE 26 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~----g~~~~~ 26 (79)
+++|+|+||+|||||+++|. |..++.
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~ 53 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALKYALTGELPPN 53 (204)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCcc
Confidence 47899999999999999994 766553
No 393
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.00 E-value=1.8e-10 Score=61.29 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=19.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQ 22 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~ 22 (79)
+++|+|+||||||||+++|...
T Consensus 30 ~~~i~G~NGsGKSTll~~i~~~ 51 (213)
T cd03279 30 LFLICGPTGAGKSTILDAITYA 51 (213)
T ss_pred EEEEECCCCCCHHHHHHHheee
Confidence 4789999999999999999853
No 394
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.00 E-value=7.6e-10 Score=65.63 Aligned_cols=53 Identities=23% Similarity=0.225 Sum_probs=40.2
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhccc-----CCCCc--EEEEEecCCccH--HHHHHHHHHHh
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQE-----KIFDE--VGIATVSQDPDI--IKVQGELAKSL 54 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~-----~~~~~--~~~~~v~q~~~~--~~v~~~i~~~~ 54 (79)
+-|+||||||||+|+|.+.|+.+.. ...++ ...-|+||.|.. -++.+++..+.
T Consensus 464 LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~ 525 (659)
T KOG0060|consen 464 LLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPL 525 (659)
T ss_pred EEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccC
Confidence 3589999999999999999998854 13333 568899999843 36777776654
No 395
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.99 E-value=1.2e-08 Score=55.79 Aligned_cols=24 Identities=33% Similarity=0.225 Sum_probs=21.4
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhcc
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQ 25 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~ 25 (79)
+.|+|++|+||||+++.+.....+
T Consensus 46 ~~l~G~~G~GKTtl~~~l~~~l~~ 69 (269)
T TIGR03015 46 ILITGEVGAGKTTLIRNLLKRLDQ 69 (269)
T ss_pred EEEEcCCCCCHHHHHHHHHHhcCC
Confidence 578999999999999999888764
No 396
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.99 E-value=5.7e-10 Score=64.90 Aligned_cols=40 Identities=18% Similarity=0.360 Sum_probs=32.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccCC-CCcEEEEEecCC
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEKI-FDEVGIATVSQD 40 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~~-~~~~~~~~v~q~ 40 (79)
+++++||||.||||++++++|.++|+.. .....++|-||-
T Consensus 369 vigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQy 409 (591)
T COG1245 369 VIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQY 409 (591)
T ss_pred EEEEECCCCcchHHHHHHHhccccCCCCCCccceEeeccee
Confidence 5799999999999999999999999842 444567777774
No 397
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.99 E-value=4.3e-10 Score=58.31 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.0
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLR 24 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~ 24 (79)
+++|+|+|||||||+++.|...+.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 368999999999999999988654
No 398
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.98 E-value=5.5e-10 Score=60.65 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=21.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ 25 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~ 25 (79)
+.+|+||||||||||+.+|.+...+
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~~ 48 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLGE 48 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3689999999999999999987753
No 399
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=98.98 E-value=3.8e-10 Score=58.71 Aligned_cols=25 Identities=24% Similarity=0.189 Sum_probs=22.5
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
+-++||||||||||+-.+.|+.+..
T Consensus 28 ~HliGPNGaGKSTLLA~lAGm~~~s 52 (248)
T COG4138 28 LHLVGPNGAGKSTLLARMAGMTSGS 52 (248)
T ss_pred EEEECCCCccHHHHHHHHhCCCCCC
Confidence 3479999999999999999998876
No 400
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.98 E-value=4.7e-10 Score=54.74 Aligned_cols=23 Identities=30% Similarity=0.328 Sum_probs=20.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQL 23 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~ 23 (79)
+++|.|++||||||+++.|...+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998864
No 401
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.97 E-value=4.8e-10 Score=59.18 Aligned_cols=24 Identities=29% Similarity=0.203 Sum_probs=21.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLR 24 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~ 24 (79)
+++|+||||||||||++.+.+..+
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCc
Confidence 478999999999999999999875
No 402
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.97 E-value=7.5e-09 Score=59.56 Aligned_cols=51 Identities=12% Similarity=0.116 Sum_probs=41.0
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhcccCCCCcEEEEEecCCc--cHHHHHHHHHHH
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQEKIFDEVGIATVSQDP--DIIKVQGELAKS 53 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~~~~~~~~~~~v~q~~--~~~~v~~~i~~~ 53 (79)
++|+||+|+|||||++.|++.+... .|+...|+++.++. +...+++.+...
T Consensus 171 ~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~ 223 (415)
T TIGR00767 171 GLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGE 223 (415)
T ss_pred EEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhce
Confidence 6899999999999999999987655 57777899999884 556677777543
No 403
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.8e-09 Score=62.26 Aligned_cols=50 Identities=20% Similarity=0.216 Sum_probs=38.2
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH--HHHHHHHH
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI--IKVQGELA 51 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~--~~v~~~i~ 51 (79)
++|+|+||+||||+++.+++.+.++. ..++ +.++.||||..+ .++..|+.
T Consensus 292 vAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ 358 (497)
T COG5265 292 VAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIK 358 (497)
T ss_pred EEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHh
Confidence 78999999999999999999998872 2222 358999999754 34555543
No 404
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.96 E-value=2.5e-09 Score=57.25 Aligned_cols=54 Identities=24% Similarity=0.406 Sum_probs=40.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc-----C--CCC----------------cEEEEEecCCcc-----HHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE-----K--IFD----------------EVGIATVSQDPD-----IIKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~-----~--~~~----------------~~~~~~v~q~~~-----~~~v~~~i~~ 52 (79)
+.|+||+||||||-++|+|+|..+.. . .|+ ++.++++||+|. ...+..++..
T Consensus 35 i~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq 114 (330)
T COG4170 35 IRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQ 114 (330)
T ss_pred eeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHh
Confidence 35899999999999999999987654 1 122 236889999983 3577777777
Q ss_pred Hh
Q 044571 53 SL 54 (79)
Q Consensus 53 ~~ 54 (79)
.+
T Consensus 115 ~I 116 (330)
T COG4170 115 NI 116 (330)
T ss_pred hC
Confidence 66
No 405
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.96 E-value=5.6e-10 Score=58.99 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=19.5
Q ss_pred CeeEEcCCCCcHHHHHHHHHhh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQ 22 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~ 22 (79)
+++|+||||+||||++++|.+.
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred EEEEECCCCCccHHHHHHHHHH
Confidence 3689999999999999999843
No 406
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.95 E-value=6e-10 Score=57.75 Aligned_cols=24 Identities=29% Similarity=0.235 Sum_probs=21.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLR 24 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~ 24 (79)
+++|+|||||||||+++.|.+..+
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCc
Confidence 478999999999999999998653
No 407
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.94 E-value=6.1e-10 Score=58.78 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=18.5
Q ss_pred CeeEEcCCCCcHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVG 20 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~ 20 (79)
+++|+||||+|||||++.|.
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 37899999999999999998
No 408
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.94 E-value=1.1e-09 Score=54.88 Aligned_cols=25 Identities=32% Similarity=0.298 Sum_probs=22.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ 25 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~ 25 (79)
+++|+||+|||||||++.|....+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~ 25 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDP 25 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCc
Confidence 4789999999999999999988654
No 409
>PLN02796 D-glycerate 3-kinase
Probab=98.94 E-value=7.4e-10 Score=62.50 Aligned_cols=26 Identities=23% Similarity=0.175 Sum_probs=23.4
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
++||.|++|||||||++.|.+.+.+.
T Consensus 102 iIGI~G~sGSGKSTLa~~L~~lL~~~ 127 (347)
T PLN02796 102 VIGISAPQGCGKTTLVFALVYLFNAT 127 (347)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhccc
Confidence 37999999999999999999998753
No 410
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.92 E-value=4e-09 Score=61.94 Aligned_cols=50 Identities=22% Similarity=0.187 Sum_probs=35.5
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccCCCCcEEEEEecCCccHHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEKIFDEVGIATVSQDPDIIKVQGELAK 52 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~~~~~~~~~~v~q~~~~~~v~~~i~~ 52 (79)
+++++||||+||||++..|++.+.... ....++.+.+|.......+++..
T Consensus 258 Vi~LvGpnGvGKTTTiaKLA~~~~~~~--G~~kV~LI~~Dt~RigA~EQLr~ 307 (484)
T PRK06995 258 VFALMGPTGVGKTTTTAKLAARCVMRH--GASKVALLTTDSYRIGGHEQLRI 307 (484)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHhc--CCCeEEEEeCCccchhHHHHHHH
Confidence 478999999999999999998775431 12356788888754444555443
No 411
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.91 E-value=7.2e-10 Score=64.76 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=20.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
+++|+||||||||||++ .+...|+
T Consensus 34 iv~L~G~SGsGKSTLLr--~~l~~~~ 57 (504)
T TIGR03238 34 LLFLCGSSGDGKSEILA--ENKRKFS 57 (504)
T ss_pred EEEEECCCCCCHHHHHh--cCCCCCC
Confidence 47899999999999999 5666655
No 412
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.90 E-value=1.3e-09 Score=57.33 Aligned_cols=26 Identities=38% Similarity=0.466 Sum_probs=23.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
+|||.|++||||||+++.|...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 58999999999999999999887654
No 413
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=1.6e-09 Score=63.37 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=31.4
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhcccCC----CCcEEEEEecCCc
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQEKI----FDEVGIATVSQDP 41 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~~~----~~~~~~~~v~q~~ 41 (79)
++||||||.|||||++++.|.+.|+.. -....+++.-|.+
T Consensus 616 iaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~ 659 (807)
T KOG0066|consen 616 IAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHA 659 (807)
T ss_pred eEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhh
Confidence 799999999999999999999988731 1223567766665
No 414
>PRK08118 topology modulation protein; Reviewed
Probab=98.88 E-value=2.3e-09 Score=55.32 Aligned_cols=25 Identities=36% Similarity=0.387 Sum_probs=21.6
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
+.|+|++||||||+++.|.......
T Consensus 4 I~I~G~~GsGKSTlak~L~~~l~~~ 28 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKLNIP 28 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC
Confidence 6799999999999999999876543
No 415
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=98.88 E-value=1.7e-09 Score=55.98 Aligned_cols=25 Identities=28% Similarity=0.174 Sum_probs=22.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ 25 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~ 25 (79)
+++|+|++|||||||++.|...+.+
T Consensus 8 ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 8 LLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred EEEEECCCCChHHHHHHHHHHHHhh
Confidence 4789999999999999999988765
No 416
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.87 E-value=1.5e-08 Score=58.23 Aligned_cols=49 Identities=14% Similarity=0.141 Sum_probs=40.0
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhcccCCCCcEEEEEecCCc--cHHHHHHHHH
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQEKIFDEVGIATVSQDP--DIIKVQGELA 51 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~~~~~~~~~~~v~q~~--~~~~v~~~i~ 51 (79)
.+|+||.|+|||||++.|+..+... .|+...|..+.++. +...+++.+.
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIl 222 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVK 222 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhc
Confidence 4799999999999999999887665 67888899999987 4456666665
No 417
>PTZ00301 uridine kinase; Provisional
Probab=98.83 E-value=3e-09 Score=56.66 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=19.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQL 23 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~ 23 (79)
++||.|+||||||||++.|...+
T Consensus 5 iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 5 VIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEEECCCcCCHHHHHHHHHHHH
Confidence 48999999999999998886544
No 418
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=98.83 E-value=3.2e-09 Score=61.43 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=23.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
++||.|++|||||||++.|.+++.+.
T Consensus 214 IIGIsG~qGSGKSTLa~~L~~lL~~~ 239 (460)
T PLN03046 214 VIGFSAPQGCGKTTLVFALDYLFRVT 239 (460)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccc
Confidence 47999999999999999999887654
No 419
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.83 E-value=3.5e-09 Score=58.27 Aligned_cols=25 Identities=24% Similarity=0.142 Sum_probs=23.4
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
++|+|++|||||||++.+.+.+++.
T Consensus 114 ~~i~g~~g~GKttl~~~l~~~~~~~ 138 (270)
T TIGR02858 114 TLIISPPQCGKTTLLRDLARILSTG 138 (270)
T ss_pred EEEEcCCCCCHHHHHHHHhCccCCC
Confidence 5899999999999999999999886
No 420
>PRK07429 phosphoribulokinase; Provisional
Probab=98.81 E-value=3.9e-09 Score=59.45 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=23.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
++||.|+|||||||+++.+.+.+.+.
T Consensus 10 IIgI~G~SGSGKSTla~~L~~ll~~~ 35 (327)
T PRK07429 10 LLGVAGDSGCGKTTFLRGLADLLGEE 35 (327)
T ss_pred EEEEECCCCCCHHHHHHHHHhHhccC
Confidence 47999999999999999999987654
No 421
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.81 E-value=2.6e-09 Score=57.38 Aligned_cols=16 Identities=38% Similarity=0.555 Sum_probs=14.7
Q ss_pred CeeEEcCCCCcHHHHH
Q 044571 1 MEGLYGISCVGKTTLA 16 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~ 16 (79)
+++|+|+||||||||+
T Consensus 23 ~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 23 LVVITGVSGSGKSSLA 38 (226)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4799999999999995
No 422
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.80 E-value=4.1e-09 Score=54.86 Aligned_cols=20 Identities=20% Similarity=0.057 Sum_probs=18.5
Q ss_pred CeeEEcCCCCcHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVG 20 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~ 20 (79)
+++|+|++||||||+++.+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999998
No 423
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.80 E-value=8.1e-09 Score=46.08 Aligned_cols=23 Identities=35% Similarity=0.406 Sum_probs=20.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQL 23 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~ 23 (79)
+++|.|++|+||||+++.+...+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998875
No 424
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.80 E-value=7.7e-08 Score=47.39 Aligned_cols=75 Identities=21% Similarity=0.192 Sum_probs=42.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccC---CCCcEEEEEecCCccHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHHHHh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEK---IFDEVGIATVSQDPDIIKVQGELAKSLGWALNE-KDEKERADRLRLMFS 75 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~~~~~~v~q~~~~~~v~~~i~~~~~~~~~~-~~~~~~~~~l~~~l~ 75 (79)
++.|.|++|+|||++++.+........ .-....+..++...+...+...+...+...... ....+....+.+.+.
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 367899999999999999988765421 001122344444445567788888877644333 223333444444443
No 425
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.80 E-value=6.3e-09 Score=55.03 Aligned_cols=25 Identities=36% Similarity=0.423 Sum_probs=22.2
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
++|+|++|+|||||++.+.+.+++.
T Consensus 4 i~i~G~~GsGKTTll~~l~~~l~~~ 28 (199)
T TIGR00101 4 IGVAGPVGSGKTALIEALTRALRQK 28 (199)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCcC
Confidence 7899999999999999999887653
No 426
>PRK08233 hypothetical protein; Provisional
Probab=98.79 E-value=5.5e-09 Score=54.12 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLR 24 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~ 24 (79)
+++|.|++||||||+++.|...+.
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 478999999999999999988764
No 427
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.78 E-value=6e-09 Score=55.05 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=21.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ 25 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~ 25 (79)
++.|+||+||||||+++.+.+.+.+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3679999999999999998887754
No 428
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.78 E-value=6e-09 Score=53.48 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=19.9
Q ss_pred eeEEcCCCCcHHHHHHHHHhh
Q 044571 2 EGLYGISCVGKTTLANFVGNQ 22 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~ 22 (79)
++|+|++|+|||||++.+.+.
T Consensus 17 v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 17 ILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred EEEEccCCCCHHHHHHHHhcC
Confidence 689999999999999999996
No 429
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.77 E-value=6e-09 Score=52.36 Aligned_cols=21 Identities=38% Similarity=0.504 Sum_probs=19.9
Q ss_pred eeEEcCCCCcHHHHHHHHHhh
Q 044571 2 EGLYGISCVGKTTLANFVGNQ 22 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~ 22 (79)
++|+|++|+|||||++.+.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999887
No 430
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.77 E-value=6.5e-09 Score=53.29 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=20.1
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhc
Q 044571 2 EGLYGISCVGKTTLANFVGNQLR 24 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~ 24 (79)
++++|+||+|||||++.|.+...
T Consensus 38 ~vl~G~SGvGKSSLiN~L~~~~~ 60 (161)
T PF03193_consen 38 SVLLGQSGVGKSSLINALLPEAK 60 (161)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS-
T ss_pred EEEECCCCCCHHHHHHHHHhhcc
Confidence 57899999999999999998743
No 431
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.77 E-value=7.1e-09 Score=58.00 Aligned_cols=25 Identities=20% Similarity=0.221 Sum_probs=22.9
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
+.|+|++||||||+++++.+.+++.
T Consensus 147 ili~G~tGsGKTTll~al~~~~~~~ 171 (308)
T TIGR02788 147 IIISGGTGSGKTTFLKSLVDEIPKD 171 (308)
T ss_pred EEEECCCCCCHHHHHHHHHccCCcc
Confidence 6799999999999999999998765
No 432
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.76 E-value=5.9e-09 Score=62.50 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=22.0
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLR 24 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~ 24 (79)
++||.|+||||||||++.|.+.++
T Consensus 67 IIGIaGpSGSGKTTLAk~LaglLp 90 (656)
T PLN02318 67 LVGVAGPSGAGKTVFTEKVLNFMP 90 (656)
T ss_pred EEEEECCCCCcHHHHHHHHHhhCC
Confidence 489999999999999999999874
No 433
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.76 E-value=8.4e-09 Score=50.06 Aligned_cols=21 Identities=33% Similarity=0.445 Sum_probs=19.8
Q ss_pred eeEEcCCCCcHHHHHHHHHhh
Q 044571 2 EGLYGISCVGKTTLANFVGNQ 22 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~ 22 (79)
++|+|+.|+|||||++.+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 689999999999999999985
No 434
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=5.3e-09 Score=61.47 Aligned_cols=20 Identities=40% Similarity=0.584 Sum_probs=18.9
Q ss_pred eeEEcCCCCcHHHHHHHHHh
Q 044571 2 EGLYGISCVGKTTLANFVGN 21 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g 21 (79)
+|++|+||+|||||+|+|..
T Consensus 109 YGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 109 YGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred cceeCCCCCcHHHHHHHHHh
Confidence 68999999999999999987
No 435
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.76 E-value=7.7e-09 Score=52.91 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.2
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhc
Q 044571 2 EGLYGISCVGKTTLANFVGNQLR 24 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~ 24 (79)
+.++|++||||||+++.+.+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999988753
No 436
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.76 E-value=8.7e-09 Score=54.31 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=20.8
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhc
Q 044571 2 EGLYGISCVGKTTLANFVGNQLR 24 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~ 24 (79)
++|+|++|+|||||++++.|...
T Consensus 4 I~i~G~~g~GKSSLin~L~g~~~ 26 (197)
T cd04104 4 IAVTGESGAGKSSFINALRGVGH 26 (197)
T ss_pred EEEECCCCCCHHHHHHHHhccCC
Confidence 68999999999999999999643
No 437
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.76 E-value=9.9e-09 Score=65.95 Aligned_cols=42 Identities=21% Similarity=0.373 Sum_probs=34.3
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhcccC---CCCc------------EEEEEecCCccH
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQEK---IFDE------------VGIATVSQDPDI 43 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~~---~~~~------------~~~~~v~q~~~~ 43 (79)
+||||..|||||||+.++.++..+.. ..|+ .+++.+||||-+
T Consensus 1169 VGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvL 1225 (1381)
T KOG0054|consen 1169 VGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVL 1225 (1381)
T ss_pred EEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCce
Confidence 79999999999999999999998762 2333 368899999843
No 438
>PTZ00202 tuzin; Provisional
Probab=98.74 E-value=1.5e-07 Score=55.19 Aligned_cols=48 Identities=17% Similarity=0.100 Sum_probs=33.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcccCCCCcEEEEEecCCccHHHHHHHHHHHhcC
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQEKIFDEVGIATVSQDPDIIKVQGELAKSLGW 56 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~~~~~~~~~~~v~q~~~~~~v~~~i~~~~~~ 56 (79)
+++|+|++|||||||++.+.+... ...+++.-.....+...++..+..
T Consensus 288 ivvLtG~~G~GKTTLlR~~~~~l~--------~~qL~vNprg~eElLr~LL~ALGV 335 (550)
T PTZ00202 288 IVVFTGFRGCGKSSLCRSAVRKEG--------MPAVFVDVRGTEDTLRSVVKALGV 335 (550)
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC--------ceEEEECCCCHHHHHHHHHHHcCC
Confidence 467999999999999999986654 123333222446777778777764
No 439
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.74 E-value=9.5e-09 Score=54.81 Aligned_cols=25 Identities=40% Similarity=0.421 Sum_probs=22.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ 25 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~ 25 (79)
++||.|+|||||||+++.|...+..
T Consensus 10 iIgIaG~SgSGKTTva~~l~~~~~~ 34 (218)
T COG0572 10 IIGIAGGSGSGKTTVAKELSEQLGV 34 (218)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 4799999999999999999888763
No 440
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.73 E-value=1e-08 Score=51.56 Aligned_cols=23 Identities=39% Similarity=0.277 Sum_probs=20.7
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhc
Q 044571 2 EGLYGISCVGKTTLANFVGNQLR 24 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~ 24 (79)
+.++|++|||||||+++|.+...
T Consensus 4 imliG~~g~GKTTL~q~L~~~~~ 26 (143)
T PF10662_consen 4 IMLIGPSGSGKTTLAQALNGEEI 26 (143)
T ss_pred EEEECCCCCCHHHHHHHHcCCCC
Confidence 57899999999999999999763
No 441
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.73 E-value=1e-08 Score=54.89 Aligned_cols=22 Identities=23% Similarity=0.147 Sum_probs=19.4
Q ss_pred CeeEEcCCCCcHHHHHHHHHhh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQ 22 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~ 22 (79)
+++|+||||+||||++|.+.+.
T Consensus 32 ~~~l~Gpn~sGKstllr~i~~~ 53 (216)
T cd03284 32 ILLITGPNMAGKSTYLRQVALI 53 (216)
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 3689999999999999999754
No 442
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.72 E-value=1.5e-08 Score=49.82 Aligned_cols=25 Identities=32% Similarity=0.292 Sum_probs=21.9
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
+.|+||+|+||||+++.+.......
T Consensus 5 ~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 5 ILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred EEEECCCCCcHHHHHHHHHhccCCC
Confidence 6789999999999999998887654
No 443
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.72 E-value=1e-08 Score=54.72 Aligned_cols=20 Identities=20% Similarity=0.149 Sum_probs=18.2
Q ss_pred eeEEcCCCCcHHHHHHHHHh
Q 044571 2 EGLYGISCVGKTTLANFVGN 21 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g 21 (79)
+.|+||||+||||++|.+..
T Consensus 32 ~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 32 MVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred EEEECCCCCChHHHHHHHHH
Confidence 67999999999999999973
No 444
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.72 E-value=1.2e-08 Score=53.80 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=21.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ 25 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~ 25 (79)
+++|+|+|||||||+++.|.+.+.+
T Consensus 26 ~i~i~G~~GsGKSTla~~l~~~l~~ 50 (198)
T PRK03846 26 VLWFTGLSGSGKSTVAGALEEALHE 50 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999997643
No 445
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.72 E-value=1.3e-08 Score=58.08 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=21.4
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLR 24 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~ 24 (79)
.+.|+||+||||||+++++.+.+.
T Consensus 136 lilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 136 IVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 368999999999999999998873
No 446
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.71 E-value=1.3e-08 Score=53.79 Aligned_cols=21 Identities=14% Similarity=0.124 Sum_probs=18.6
Q ss_pred eeEEcCCCCcHHHHHHHHHhh
Q 044571 2 EGLYGISCVGKTTLANFVGNQ 22 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~ 22 (79)
.+|+|+||+||||++.+|.-.
T Consensus 24 ~~i~G~NGsGKStll~ai~~~ 44 (198)
T cd03276 24 NFIVGNNGSGKSAILTALTIG 44 (198)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 479999999999999998754
No 447
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.71 E-value=7.3e-08 Score=48.75 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=21.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ 25 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~ 25 (79)
++.|.|++|+||||++..+.+....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~ 25 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT 25 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999999888654
No 448
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=98.71 E-value=1.1e-08 Score=53.53 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.2
Q ss_pred eeEEcCCCCcHHHHHHHHHhhh
Q 044571 2 EGLYGISCVGKTTLANFVGNQL 23 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~ 23 (79)
.+|+|+||+||||++.+|.-.+
T Consensus 22 ~vi~G~Ng~GKStil~ai~~~L 43 (202)
T PF13476_consen 22 NVIYGPNGSGKSTILEAIRYAL 43 (202)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999986655
No 449
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.70 E-value=1.8e-08 Score=52.85 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=21.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQL 23 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~ 23 (79)
+++|.|++||||||+++.|....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998875
No 450
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.70 E-value=1.3e-08 Score=58.97 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=20.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQL 23 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~ 23 (79)
+++++|+||+||||++..|.+..
T Consensus 193 vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 193 VYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998753
No 451
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.70 E-value=1e-08 Score=65.99 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=22.7
Q ss_pred CeeEEcCCCCcHHHHHHHH----Hhhhccc
Q 044571 1 MEGLYGISCVGKTTLANFV----GNQLRQE 26 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i----~g~~~~~ 26 (79)
+++|+|||||||||++.+| +|..+|.
T Consensus 30 ~~~I~G~NGaGKTTil~ai~~al~G~~~~~ 59 (1311)
T TIGR00606 30 LTILVGPNGAGKTTIIECLKYICTGDFPPG 59 (1311)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCCCCC
Confidence 4789999999999999998 5887774
No 452
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.69 E-value=2.1e-08 Score=52.28 Aligned_cols=24 Identities=50% Similarity=0.614 Sum_probs=21.8
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLR 24 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~ 24 (79)
+++|.|++||||||+++.|...+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999988764
No 453
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.69 E-value=1.9e-08 Score=52.61 Aligned_cols=20 Identities=30% Similarity=0.287 Sum_probs=18.4
Q ss_pred CeeEEcCCCCcHHHHHHHHH
Q 044571 1 MEGLYGISCVGKTTLANFVG 20 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~ 20 (79)
++.|+||||+||||++|.+.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred CEEEECCCCCcHHHHHHHHH
Confidence 46899999999999999997
No 454
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.69 E-value=1.5e-08 Score=51.31 Aligned_cols=19 Identities=37% Similarity=0.419 Sum_probs=18.3
Q ss_pred eeEEcCCCCcHHHHHHHHH
Q 044571 2 EGLYGISCVGKTTLANFVG 20 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~ 20 (79)
++++|++|+|||||++.+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~ 20 (170)
T cd01876 2 IAFAGRSNVGKSSLINALT 20 (170)
T ss_pred EEEEcCCCCCHHHHHHHHh
Confidence 6899999999999999999
No 455
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.69 E-value=1.5e-08 Score=56.96 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=23.0
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
+++++||||+||||++..+++.+.+.
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 47899999999999999999988654
No 456
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.69 E-value=1.8e-08 Score=54.00 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.0
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLR 24 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~ 24 (79)
+++|.||+||||||+++.|...+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999986554
No 457
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.68 E-value=1.7e-08 Score=56.04 Aligned_cols=26 Identities=38% Similarity=0.328 Sum_probs=22.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
+++++|+||+|||||++.|.+...+.
T Consensus 163 ~~~~~G~sg~GKSTlin~l~~~~~~~ 188 (287)
T cd01854 163 TSVLVGQSGVGKSTLINALLPDLDLA 188 (287)
T ss_pred eEEEECCCCCCHHHHHHHHhchhhcc
Confidence 36899999999999999999987554
No 458
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.68 E-value=2.3e-08 Score=52.16 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=21.1
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhcc
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQ 25 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~ 25 (79)
+.|+|++||||||+++.|...++.
T Consensus 3 iiilG~pGaGK~T~A~~La~~~~i 26 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKLGL 26 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 679999999999999999887544
No 459
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.68 E-value=1.7e-08 Score=53.63 Aligned_cols=22 Identities=18% Similarity=0.129 Sum_probs=19.5
Q ss_pred eeEEcCCCCcHHHHHHHHHhhh
Q 044571 2 EGLYGISCVGKTTLANFVGNQL 23 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~ 23 (79)
++|+||||+||||+++++.+..
T Consensus 32 ~~l~G~n~~GKstll~~i~~~~ 53 (204)
T cd03282 32 HIITGPNMSGKSTYLKQIALLA 53 (204)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998653
No 460
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.68 E-value=1.7e-08 Score=51.80 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=18.6
Q ss_pred eeEEcCCCCcHHHHHHHHHhhh
Q 044571 2 EGLYGISCVGKTTLANFVGNQL 23 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~ 23 (79)
..|+||||+||||+++.+.-..
T Consensus 24 ~~i~G~NgsGKS~~l~~i~~~~ 45 (162)
T cd03227 24 TIITGPNGSGKSTILDAIGLAL 45 (162)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999975443
No 461
>PRK06696 uridine kinase; Validated
Probab=98.68 E-value=1.9e-08 Score=54.00 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.5
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLR 24 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~ 24 (79)
+|+|.|++||||||+++.|...+.
T Consensus 24 iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 24 RVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 479999999999999999988764
No 462
>PRK06547 hypothetical protein; Provisional
Probab=98.68 E-value=1.9e-08 Score=52.14 Aligned_cols=23 Identities=35% Similarity=0.263 Sum_probs=20.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQL 23 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~ 23 (79)
+++|.|++||||||+++.+....
T Consensus 17 ~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 17 TVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36888999999999999998764
No 463
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.67 E-value=1.9e-08 Score=50.27 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=20.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLR 24 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~ 24 (79)
++.++|++||||||+++.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 367899999999999999986543
No 464
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.67 E-value=2.2e-08 Score=51.89 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLR 24 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~ 24 (79)
++.++|++||||||+++.+...+.
T Consensus 9 ~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 9 VIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 368999999999999999988765
No 465
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.67 E-value=2.9e-08 Score=48.18 Aligned_cols=24 Identities=29% Similarity=0.131 Sum_probs=20.4
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhcc
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQ 25 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~ 25 (79)
+.|+|+.|+|||||++.+.+...+
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--
T ss_pred EEEECcCCCCHHHHHHHHhcCCCc
Confidence 679999999999999999987655
No 466
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.67 E-value=2.3e-08 Score=53.25 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=20.3
Q ss_pred eeEEcCCCCcHHHHH-HHHHhhhcc
Q 044571 2 EGLYGISCVGKTTLA-NFVGNQLRQ 25 (79)
Q Consensus 2 ~~i~G~~G~GKstl~-~~i~g~~~~ 25 (79)
++++|++|+|||||+ +.+.+..++
T Consensus 12 v~liG~~g~GKTtLi~~~~~~~~~~ 36 (215)
T PTZ00132 12 LILVGDGGVGKTTFVKRHLTGEFEK 36 (215)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCC
Confidence 689999999999999 578877543
No 467
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.66 E-value=2.1e-08 Score=52.34 Aligned_cols=22 Identities=36% Similarity=0.234 Sum_probs=19.9
Q ss_pred eeEEcCCCCcHHHHHHHHHhhh
Q 044571 2 EGLYGISCVGKTTLANFVGNQL 23 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~ 23 (79)
+.|.||||+||||+++++....
T Consensus 7 ~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 7 IVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 6789999999999999998765
No 468
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=98.66 E-value=3e-08 Score=50.63 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=22.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ 25 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~ 25 (79)
+++|+|++|+||||++..+...+..
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~ 25 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKA 25 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999999887654
No 469
>PRK13949 shikimate kinase; Provisional
Probab=98.66 E-value=2.8e-08 Score=51.37 Aligned_cols=23 Identities=35% Similarity=0.330 Sum_probs=20.4
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhc
Q 044571 2 EGLYGISCVGKTTLANFVGNQLR 24 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~ 24 (79)
+.|+|++||||||+.+.+...+.
T Consensus 4 I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 4 IFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999987653
No 470
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.66 E-value=2.8e-08 Score=51.50 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=20.4
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhc
Q 044571 2 EGLYGISCVGKTTLANFVGNQLR 24 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~ 24 (79)
+.|+|++||||||+++.+.+...
T Consensus 7 I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 7 IFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred EEEECCCCcCHHHHHHHHHHHcC
Confidence 67999999999999999987643
No 471
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.66 E-value=1.9e-08 Score=59.51 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=23.2
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
+||+|+|||||||++++|++...|.
T Consensus 104 ygLiG~nG~Gkst~L~~i~~~e~P~ 128 (614)
T KOG0927|consen 104 YGLIGPNGSGKSTFLRAIAGREVPI 128 (614)
T ss_pred EEEEcCCCCcHhHHHHHHhcCCCCC
Confidence 6899999999999999999998775
No 472
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.66 E-value=2.1e-08 Score=53.30 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=18.6
Q ss_pred eeEEcCCCCcHHHHHHHHHhh
Q 044571 2 EGLYGISCVGKTTLANFVGNQ 22 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~ 22 (79)
+.|+||||||||||++.+...
T Consensus 16 ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 16 VVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred EEEECcCCCCHHHHHHHHHhc
Confidence 678999999999999999654
No 473
>PRK06217 hypothetical protein; Validated
Probab=98.66 E-value=2.8e-08 Score=51.83 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=20.9
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhcc
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQ 25 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~ 25 (79)
|.|+|.+||||||+.+.|...+..
T Consensus 4 I~i~G~~GsGKSTla~~L~~~l~~ 27 (183)
T PRK06217 4 IHITGASGSGTTTLGAALAERLDI 27 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC
Confidence 689999999999999999877543
No 474
>PRK00098 GTPase RsgA; Reviewed
Probab=98.65 E-value=2.4e-08 Score=55.69 Aligned_cols=26 Identities=38% Similarity=0.420 Sum_probs=22.5
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
+++++|+||+|||||++.|.+...+.
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~~~ 191 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLELK 191 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 36899999999999999999886553
No 475
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.64 E-value=2.8e-08 Score=52.23 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=19.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQL 23 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~ 23 (79)
+..|+|+||+|||||+..|.-..
T Consensus 39 IT~i~GENGsGKSTLLEaiA~~~ 61 (233)
T COG3910 39 ITFITGENGSGKSTLLEAIAAGM 61 (233)
T ss_pred eEEEEcCCCccHHHHHHHHHhhc
Confidence 35689999999999999986543
No 476
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.63 E-value=3.3e-08 Score=54.90 Aligned_cols=26 Identities=27% Similarity=0.194 Sum_probs=22.4
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
+++|+|++|||||||++.+.+.+...
T Consensus 106 ~v~l~G~pGsGKTTLl~~l~~~l~~~ 131 (290)
T PRK10463 106 VLNLVSSPGSGKTTLLTETLMRLKDS 131 (290)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccC
Confidence 47899999999999999998876543
No 477
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.63 E-value=3.4e-08 Score=51.65 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=22.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ 25 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~ 25 (79)
+++|.|+.||||||+++.|...+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999988753
No 478
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.63 E-value=5.9e-09 Score=55.84 Aligned_cols=22 Identities=14% Similarity=0.161 Sum_probs=0.0
Q ss_pred CeeEEcCCCCcHHHHHHHHHhh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQ 22 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~ 22 (79)
+.+|+|+|||||||++++|..+
T Consensus 1 i~viiG~N~sGKS~il~ai~~~ 22 (303)
T PF13304_consen 1 INVIIGPNGSGKSNILEAIYFL 22 (303)
T ss_dssp ----------------------
T ss_pred CCcccccccccccccccccccc
Confidence 3579999999999999999765
No 479
>PLN02348 phosphoribulokinase
Probab=98.63 E-value=3.1e-08 Score=56.92 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=21.7
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLR 24 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~ 24 (79)
++||.|+|||||||+++.|...+.
T Consensus 51 IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 51 VIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 489999999999999999998874
No 480
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.62 E-value=2.6e-08 Score=63.02 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=18.9
Q ss_pred CeeEEcCCCCcHHHHHHH---HHhhhc
Q 044571 1 MEGLYGISCVGKTTLANF---VGNQLR 24 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~---i~g~~~ 24 (79)
+.+|+|||||||||++.+ ++|...
T Consensus 25 ~~~i~G~NGsGKS~ll~ai~~~lg~~~ 51 (1179)
T TIGR02168 25 ITGIVGPNGCGKSNIVDAIRWVLGEQS 51 (1179)
T ss_pred cEEEECCCCCChhHHHHHHHHHHcCCc
Confidence 468999999999999965 555433
No 481
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.62 E-value=3.5e-08 Score=50.44 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=19.9
Q ss_pred eeEEcCCCCcHHHHHHHHHhhh
Q 044571 2 EGLYGISCVGKTTLANFVGNQL 23 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~ 23 (79)
++|+|.+|+|||||++.+.+..
T Consensus 3 v~ivG~~~~GKStl~~~l~~~~ 24 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNAK 24 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcCC
Confidence 6899999999999999998753
No 482
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.62 E-value=2.8e-08 Score=58.16 Aligned_cols=26 Identities=23% Similarity=0.515 Sum_probs=24.5
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
++||+|+||.||||.++++.|.+.|.
T Consensus 102 V~GilG~NGiGKsTalkILaGel~PN 127 (591)
T COG1245 102 VVGILGPNGIGKSTALKILAGELKPN 127 (591)
T ss_pred EEEEEcCCCccHHHHHHHHhCccccC
Confidence 47999999999999999999999887
No 483
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=98.62 E-value=3.4e-08 Score=52.58 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.9
Q ss_pred CeeEEcCCCCcHHHHHHHHHhh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQ 22 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~ 22 (79)
++||+|+.||||||+++.+.+.
T Consensus 7 ~igitG~igsGKSt~~~~l~~~ 28 (208)
T PRK14731 7 LVGVTGGIGSGKSTVCRFLAEM 28 (208)
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 4799999999999999999864
No 484
>PRK06762 hypothetical protein; Provisional
Probab=98.61 E-value=4e-08 Score=50.40 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=20.4
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQL 23 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~ 23 (79)
++.|.|++||||||+++.+...+
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46889999999999999998765
No 485
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.61 E-value=2.6e-08 Score=51.20 Aligned_cols=20 Identities=40% Similarity=0.571 Sum_probs=18.1
Q ss_pred EcCCCCcHHHHHHHHHhhhc
Q 044571 5 YGISCVGKTTLANFVGNQLR 24 (79)
Q Consensus 5 ~G~~G~GKstl~~~i~g~~~ 24 (79)
+|+|||||||+++.+.+.+.
T Consensus 1 ~G~sGsGKSTla~~la~~l~ 20 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLH 20 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhC
Confidence 59999999999999988874
No 486
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.61 E-value=4.1e-08 Score=51.18 Aligned_cols=21 Identities=14% Similarity=0.257 Sum_probs=18.3
Q ss_pred eeEEcCCCCcHHHHHHHHHhh
Q 044571 2 EGLYGISCVGKTTLANFVGNQ 22 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~ 22 (79)
.+|+||||+|||+++.+|+-.
T Consensus 25 ~~i~G~NGsGKSnil~Ai~~~ 45 (178)
T cd03239 25 NAIVGPNGSGKSNIVDAICFV 45 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999998544
No 487
>PRK13695 putative NTPase; Provisional
Probab=98.61 E-value=4.4e-08 Score=50.70 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=20.4
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhc
Q 044571 2 EGLYGISCVGKTTLANFVGNQLR 24 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~ 24 (79)
++|+|++|+|||||++.+++...
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999877654
No 488
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.61 E-value=5.9e-08 Score=47.72 Aligned_cols=23 Identities=39% Similarity=0.300 Sum_probs=20.6
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhc
Q 044571 2 EGLYGISCVGKTTLANFVGNQLR 24 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~ 24 (79)
+-|.||+|+||||+++.+.....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 45899999999999999998865
No 489
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.60 E-value=4.1e-08 Score=51.52 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=20.1
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQL 23 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~ 23 (79)
++.|+||||+|||||++.+....
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 36799999999999999997764
No 490
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.60 E-value=5.6e-08 Score=47.62 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=19.8
Q ss_pred eeEEcCCCCcHHHHHHHHHhhh
Q 044571 2 EGLYGISCVGKTTLANFVGNQL 23 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~ 23 (79)
|+|.|++|+||||+++.|....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998774
No 491
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=98.59 E-value=4.7e-08 Score=55.52 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=22.7
Q ss_pred eeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 2 EGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
+.|.|+.||||||+++++.+.+++.
T Consensus 165 ilI~G~tGSGKTTll~aLl~~i~~~ 189 (344)
T PRK13851 165 MLLCGPTGSGKTTMSKTLISAIPPQ 189 (344)
T ss_pred EEEECCCCccHHHHHHHHHcccCCC
Confidence 5689999999999999999998775
No 492
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.59 E-value=4.8e-08 Score=51.54 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=20.2
Q ss_pred eeEEcCCCCcHHHHHHHHHhhh
Q 044571 2 EGLYGISCVGKTTLANFVGNQL 23 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~g~~ 23 (79)
++|+|++|+|||||++.+.+..
T Consensus 44 I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 44 VALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred EEEECCCCCCHHHHHHHHhcch
Confidence 7899999999999999999864
No 493
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.59 E-value=6.5e-08 Score=48.48 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.4
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhh
Q 044571 1 MEGLYGISCVGKTTLANFVGNQL 23 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~ 23 (79)
++.|.|++||||||+++.|....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998654
No 494
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.59 E-value=3e-08 Score=57.71 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=23.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhccc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQE 26 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~~ 26 (79)
+++|+|+||+|||||+++|.+...++
T Consensus 157 ~igI~G~sGaGKSTLl~~I~g~~~~d 182 (434)
T PRK07196 157 RVGLMAGSGVGKSVLLGMITRYTQAD 182 (434)
T ss_pred EEEEECCCCCCccHHHHHHhcccCCC
Confidence 36899999999999999999987655
No 495
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.59 E-value=6.7e-08 Score=49.03 Aligned_cols=24 Identities=33% Similarity=0.373 Sum_probs=21.6
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLR 24 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~ 24 (79)
++.|+|++||||||+++.+.+.+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999874
No 496
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.58 E-value=6.1e-08 Score=53.34 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=21.3
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLR 24 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~ 24 (79)
+++|.|.|||||||+++.+...+.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~ 24 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA 24 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999887654
No 497
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.58 E-value=5.5e-08 Score=50.76 Aligned_cols=19 Identities=26% Similarity=0.281 Sum_probs=17.9
Q ss_pred eeEEcCCCCcHHHHHHHHH
Q 044571 2 EGLYGISCVGKTTLANFVG 20 (79)
Q Consensus 2 ~~i~G~~G~GKstl~~~i~ 20 (79)
++|+|++|+|||||++.+.
T Consensus 4 i~ivG~~g~GKStLl~~l~ 22 (187)
T cd04129 4 LVIVGDGACGKTSLLSVFT 22 (187)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999996
No 498
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.58 E-value=4.1e-08 Score=62.71 Aligned_cols=25 Identities=40% Similarity=0.618 Sum_probs=22.2
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ 25 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~ 25 (79)
+++|+|++|+|||||++++++.+..
T Consensus 209 vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 209 MVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred EEEEEcCCCCchHHHHHHHHHHHhh
Confidence 4799999999999999999887654
No 499
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.58 E-value=2.9e-08 Score=53.07 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=19.1
Q ss_pred eEEcCCCCcHHHHHHHHHhhh
Q 044571 3 GLYGISCVGKTTLANFVGNQL 23 (79)
Q Consensus 3 ~i~G~~G~GKstl~~~i~g~~ 23 (79)
-++|.||+|||||+|++.|..
T Consensus 44 LlVGaNGaGKtTlLKiLsGKh 64 (291)
T KOG2355|consen 44 LLVGANGAGKTTLLKILSGKH 64 (291)
T ss_pred EEEecCCCchhhhHHHhcCcc
Confidence 479999999999999999875
No 500
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.57 E-value=5.6e-08 Score=50.31 Aligned_cols=25 Identities=36% Similarity=0.486 Sum_probs=22.0
Q ss_pred CeeEEcCCCCcHHHHHHHHHhhhcc
Q 044571 1 MEGLYGISCVGKTTLANFVGNQLRQ 25 (79)
Q Consensus 1 ~~~i~G~~G~GKstl~~~i~g~~~~ 25 (79)
+++|+|++|+||||+++.+.+....
T Consensus 6 ~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 6 TVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999988753
Done!