Your job contains 1 sequence.
>044572
MPPCLLSARPPSPVITCRVSLGAVRNPPPPAPPSSLPLDPPAANLPSLTCALQCPHFQSC
SGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLY
QEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNT
SLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQ
TSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGA
SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADN
SIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWI
LRAKEASVQIGSKTNSENQSLPQTLIYISCGWESFKE
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 044572
(457 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2095128 - symbol:AT3G27180 species:3702 "Arabi... 1594 9.0e-164 1
TIGR_CMR|GSU_1452 - symbol:GSU_1452 "RNA methyltransferas... 162 1.9e-20 2
TIGR_CMR|BA_0426 - symbol:BA_0426 "RNA methyltransferase,... 153 2.8e-18 2
UNIPROTKB|O31503 - symbol:rlmCD "23S rRNA (uracil-C(5))-m... 172 8.1e-17 2
TIGR_CMR|BA_0333 - symbol:BA_0333 "RNA methyltransferase,... 161 4.2e-14 2
UNIPROTKB|Q8U1N4 - symbol:PF1172 "tRNA (uracil(54)-C(5))-... 131 9.0e-13 3
UNIPROTKB|O58994 - symbol:PH1259 "23S rRNA (uracil(747)-C... 149 2.0e-12 3
UNIPROTKB|Q9UZK1 - symbol:PYRAB11450 "23S rRNA (uracil(74... 148 6.6e-11 3
UNIPROTKB|Q8U2K7 - symbol:PF0827 "23S rRNA (uracil(747)-C... 143 3.2e-10 3
UNIPROTKB|F1RHM9 - symbol:TRMT2A "Uncharacterized protein... 169 2.0e-09 1
UNIPROTKB|F1P0L5 - symbol:TRMT2A "Uncharacterized protein... 167 3.2e-09 1
UNIPROTKB|E1BMX2 - symbol:TRMT2A "Uncharacterized protein... 164 6.5e-09 1
TIGR_CMR|SO_0980 - symbol:SO_0980 "RNA methyltransferase,... 102 1.4e-07 2
UNIPROTKB|Q8IZ69 - symbol:TRMT2A "tRNA (uracil-5-)-methyl... 151 1.9e-07 1
UNIPROTKB|Q9KL20 - symbol:rlmC "23S rRNA (uracil(747)-C(5... 114 6.6e-07 2
TIGR_CMR|VC_A0929 - symbol:VC_A0929 "TrmA family RNA meth... 114 6.6e-07 2
UNIPROTKB|F1M569 - symbol:Trmt2a "Protein Trmt2a" species... 146 6.7e-07 1
RGD|1310418 - symbol:Trmt2a "tRNA methyltransferase 2 hom... 146 6.7e-07 1
UNIPROTKB|D4A993 - symbol:Trmt2a "Protein Trmt2a" species... 146 6.9e-07 1
UNIPROTKB|Q9UZR7 - symbol:PYRAB10780 "tRNA (uracil(54)-C(... 135 1.7e-06 2
TIGR_CMR|CHY_1112 - symbol:CHY_1112 "23S rRNA (uracil-5-)... 108 8.0e-06 2
UNIPROTKB|F1PQ26 - symbol:TRMT2A "Uncharacterized protein... 134 1.4e-05 1
ZFIN|ZDB-GENE-030131-6876 - symbol:trmt2a "trm2 tRNA meth... 133 1.8e-05 1
FB|FBgn0036838 - symbol:CG3808 species:7227 "Drosophila m... 130 3.8e-05 1
TIGR_CMR|DET_1065 - symbol:DET_1065 "RNA methyltransferas... 85 9.7e-05 3
UNIPROTKB|O58864 - symbol:PH1137 "tRNA (uracil(54)-C(5))-... 115 0.00030 2
POMBASE|SPAC4G8.07c - symbol:SPAC4G8.07c "tRNA (m5U54) me... 85 0.00051 2
TIGR_CMR|GSU_1748 - symbol:GSU_1748 "RNA methyltransferas... 103 0.00056 3
UNIPROTKB|F2Z2W7 - symbol:TRMT2A "tRNA (uracil-5-)-methyl... 108 0.00059 2
>TAIR|locus:2095128 [details] [associations]
symbol:AT3G27180 species:3702 "Arabidopsis thaliana"
[GO:0008168 "methyltransferase activity" evidence=IEA] [GO:0031167
"rRNA methylation" evidence=IEA] InterPro:IPR004398 Pfam:PF03602
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0008168
eggNOG:COG2265 KO:K00599 UniGene:At.15 UniGene:At.37101
GO:GO:0031167 EMBL:BT033031 IPI:IPI00540862 RefSeq:NP_189354.2
ProteinModelPortal:B3DNP3 SMR:B3DNP3 STRING:B3DNP3 PaxDb:B3DNP3
PRIDE:B3DNP3 EnsemblPlants:AT3G27180.1 GeneID:822337
KEGG:ath:AT3G27180 TAIR:At3g27180 HOGENOM:HOG000063733 OMA:QANTRAF
PhylomeDB:B3DNP3 ProtClustDB:CLSN2680874 Genevestigator:B3DNP3
Uniprot:B3DNP3
Length = 518
Score = 1594 (566.2 bits), Expect = 9.0e-164, P = 9.0e-164
Identities = 297/446 (66%), Positives = 348/446 (78%)
Query: 13 PVITCRVSLGAVRNXXXXXXXXXXXXXXXXXXXXXXTCALQCPHFQSCSGCTHEFNLHRP 72
P+I CRVS A C+LQCPHFQSCSGCT EFNLHRP
Sbjct: 15 PIINCRVSAPA------SAPFVASVPLPPSTSSDSLACSLQCPHFQSCSGCTQEFNLHRP 68
Query: 73 IIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPH 132
+VDEA+DFFK G+ DFTFDSCRL+GWRCRAKLAVRG+S + LIGLYQEGTH VVDIP
Sbjct: 69 AVVDEASDFFKRYGVDDFTFDSCRLWGWRCRAKLAVRGSSDNALIGLYQEGTHTVVDIPE 128
Query: 133 CKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGK 192
CK+HHP INAA+ELLR+GIK +V P+DED TGDLRYVQMAVTT++T+L A ERY+NGK
Sbjct: 129 CKSHHPNINAAIELLREGIKVFDVVPFDEDQGTGDLRYVQMAVTTHSTNLRAPERYKNGK 188
Query: 193 VQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRW 252
VQ++LVWNSRNE+S N+DKL++L+ +LWR GG S+ H IHSVWANFQTSTNN+IFGNRW
Sbjct: 189 VQVSLVWNSRNERSHNADKLQALSTYLWRKGGPNSKFHLIHSVWANFQTSTNNIIFGNRW 248
Query: 253 RHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVI 312
RHLLGE DFWE+VGGIDISL PSSFGQANTRAFD LL KL KYVP G+SV DLYAGAGVI
Sbjct: 249 RHLLGERDFWEHVGGIDISLDPSSFGQANTRAFDSLLWKLHKYVPGGSSVADLYAGAGVI 308
Query: 313 GLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSD 372
GLSLA +RKC SVKC+E+NKE++LSFEKT+ RLP S++ +ISWH+AD S+ PLSW++GSD
Sbjct: 309 GLSLATSRKCSSVKCIEVNKEARLSFEKTIQRLPNSLNCSISWHHADASVNPLSWIIGSD 368
Query: 373 VLVVDPPRKGLDSSLVHALQSIGXXXXXXXXXXXXXXXXXXXXXRPWILRAKEASVQIGS 432
V+VVDPPR+GLD+SL L+S+ RPWILRAKE S+Q G+
Sbjct: 369 VVVVDPPRRGLDASLRQMLESVPSIEKRMRSSSQSSSLNAKEEKRPWILRAKELSIQAGN 428
Query: 433 K-TNSENQSLPQTLIYISCGWESFKE 457
K T+ EN +LPQ LIYISCGWESFKE
Sbjct: 429 KQTSEENNTLPQRLIYISCGWESFKE 454
>TIGR_CMR|GSU_1452 [details] [associations]
symbol:GSU_1452 "RNA methyltransferase, TrmA family"
species:243231 "Geobacter sulfurreducens PCA" [GO:0001510 "RNA
methylation" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] [GO:0008175 "tRNA methyltransferase activity"
evidence=ISS] InterPro:IPR001566 InterPro:IPR010280 Pfam:PF05958
PROSITE:PS01230 PROSITE:PS01231 GO:GO:0046872 GO:GO:0051539
GO:GO:0003723 GO:GO:0006396 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG2265 TIGRFAMs:TIGR00479 GO:GO:0008173 GO:GO:0001510
InterPro:IPR002792 PROSITE:PS50926 HOGENOM:HOG000029867 KO:K03215
OMA:FFQVNPV RefSeq:NP_952503.1 ProteinModelPortal:Q74D67
GeneID:2687765 KEGG:gsu:GSU1452 PATRIC:22025747
ProtClustDB:CLSK2391137 BioCyc:GSUL243231:GH27-1431-MONOMER
Uniprot:Q74D67
Length = 495
Score = 162 (62.1 bits), Expect = 1.9e-20, Sum P(2) = 1.9e-20
Identities = 41/132 (31%), Positives = 66/132 (50%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIVDEATDF-------FKSIGLLDF--TFDSCRLYGWRCRA 104
C SC GC +H P ++ F ++++G + T S +R A
Sbjct: 88 CKRAGSCDGCPL-IVMHYPDQLNWKRTFTERQIRRYQTLGAAEVLATLPSPNQLHYRNSA 146
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
KL V GT P+IG+Y+ +H V+DI C HHP IN V +++GI + V+ Y+
Sbjct: 147 KLVVSGTFRRPVIGIYRRNSHQVMDIGTCPLHHPLINRVVTAVKEGIAKCKVQVYNPRTG 206
Query: 165 TGDLRYVQMAVT 176
+G LRY+ + ++
Sbjct: 207 SGLLRYLVVRIS 218
Score = 154 (59.3 bits), Expect = 1.9e-20, Sum P(2) = 1.9e-20
Identities = 52/170 (30%), Positives = 87/170 (51%)
Query: 232 IHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRK 291
+ V N +S NVI G R L + E +GGI +++P SF Q N+ I+
Sbjct: 252 VEVVVQNVNSSEGNVILGQRDYFLTRQHALTEELGGIRFTISPRSFFQVNSGGARIIYET 311
Query: 292 LQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSV 349
++++ SV DLY G G I L LA R V +E+ E+ ++ ++ +RL +
Sbjct: 312 VRQWSSLTGKESVVDLYCGIGGIALFLAGT--AREVHGIEV-VEAAVNDAESNARLNRI- 367
Query: 350 DGNISWHNADNSIEPLSWLV--GS--DVLVVDPPRKGLDSSLVHALQSIG 395
N S+ D + E + LV G D++V++PPRKG D+ +++ + + G
Sbjct: 368 -HNCSFEAGD-AAELIEELVEEGERLDLVVLNPPRKGCDAGVLNKVAAAG 415
>TIGR_CMR|BA_0426 [details] [associations]
symbol:BA_0426 "RNA methyltransferase, TrmA family"
species:198094 "Bacillus anthracis str. Ames" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0008175 "tRNA methyltransferase
activity" evidence=ISS] InterPro:IPR001566 InterPro:IPR010280
Pfam:PF05958 PROSITE:PS01230 PROSITE:PS01231 GO:GO:0046872
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0051539
GO:GO:0003723 GO:GO:0006396 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 eggNOG:COG2265 TIGRFAMs:TIGR00479 OMA:YPAQLRF
GO:GO:0008173 GO:GO:0001510 KO:K00599 InterPro:IPR002792
PROSITE:PS50926 Pfam:PF01938 HOGENOM:HOG000029867
RefSeq:NP_842968.1 RefSeq:YP_017052.1 RefSeq:YP_026694.1
ProteinModelPortal:Q81Z48 DNASU:1087369
EnsemblBacteria:EBBACT00000008947 EnsemblBacteria:EBBACT00000018008
EnsemblBacteria:EBBACT00000024397 GeneID:1087369 GeneID:2819883
GeneID:2849334 KEGG:ban:BA_0426 KEGG:bar:GBAA_0426 KEGG:bat:BAS0414
ProtClustDB:CLSK886880 BioCyc:BANT260799:GJAJ-456-MONOMER
BioCyc:BANT261594:GJ7F-464-MONOMER Uniprot:Q81Z48
Length = 459
Score = 153 (58.9 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
Identities = 45/167 (26%), Positives = 84/167 (50%)
Query: 54 CPHFQSCSGCT--H-----EFNLHRPIIVDEATDFFKSI--GLLDFTFDSCRLYGWRCRA 104
CP ++ C GC H + N R I+V + K+ + T + +R ++
Sbjct: 80 CPVYEECGGCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKS 139
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E +
Sbjct: 140 QLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQ 199
Query: 165 TGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDK 211
G +R + VT T++ + G+VQ+TL+ + E+ PN ++
Sbjct: 200 KGLVRTI---VT--RTAV------QTGEVQVTLI--TTKEELPNKEQ 233
Score = 142 (55.0 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
Identities = 54/212 (25%), Positives = 94/212 (44%)
Query: 189 RNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIF 248
+ G+VQ+TL+ + E+ PN ++ +AE + + + S+ N +VIF
Sbjct: 213 QTGEVQVTLI--TTKEELPNKEQF--IAEV-------QKQMPAVKSIMQNVNWRKTSVIF 261
Query: 249 GNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGAS--VTDLY 306
G++ L G+ E +G + L+ +F Q N +L + +K + + D Y
Sbjct: 262 GDKTFKLAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAY 321
Query: 307 AGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL- 365
G G IGL LA V+ +++ E+ K R + N + A + + L
Sbjct: 322 CGVGTIGLWLA--NDAAEVRGMDVIPEAIADARKNAKRHGFT---NTKYE-AGKAEQWLP 375
Query: 366 SWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
W+ DV+VVDPPR G D L+ + +
Sbjct: 376 KWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>UNIPROTKB|O31503 [details] [associations]
symbol:rlmCD "23S rRNA (uracil-C(5))-methyltransferase
RlmCD" species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0031167 "rRNA methylation" evidence=IDA] [GO:0070041 "rRNA
(uridine-C5-)-methyltransferase activity" evidence=IDA]
InterPro:IPR001566 InterPro:IPR010280 Pfam:PF05958 PROSITE:PS01230
PROSITE:PS01231 GO:GO:0046872 GO:GO:0051539 GO:GO:0003723
EMBL:AL009126 GenomeReviews:AL009126_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 eggNOG:COG2265 GO:GO:0070041
TIGRFAMs:TIGR00479 InterPro:IPR002792 PROSITE:PS50926 Pfam:PF01938
PIR:E69793 RefSeq:NP_388555.1 ProteinModelPortal:O31503 SMR:O31503
EnsemblBacteria:EBBACT00000001048 GeneID:936060 KEGG:bsu:BSU06730
PATRIC:18972992 GenoList:BSU06730 HOGENOM:HOG000029867 KO:K03215
OMA:FFQVNPV ProtClustDB:CLSK872793 BioCyc:BSUB:BSU06730-MONOMER
Uniprot:O31503
Length = 459
Score = 172 (65.6 bits), Expect = 8.1e-17, Sum P(2) = 8.1e-17
Identities = 50/166 (30%), Positives = 80/166 (48%)
Query: 231 YIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLR 290
++ S+ N + NVIFGN + GE ++ +G + +++ SF Q N +L
Sbjct: 242 HVKSIVQNINPNKTNVIFGNETNVIWGEEYIYDLIGDVKFAISARSFYQVNPEQTKVLYD 301
Query: 291 KLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKS 348
K +Y +V D Y G G I L LA ++ + V VEI E+ + K + L +
Sbjct: 302 KALEYAELQGEETVIDAYCGIGTISLFLA--KQAKKVYGVEIVPEA-IEDAKRNAELNGN 358
Query: 349 VDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ + A+ I P W + +D LVVDPPRKG D +L+ +
Sbjct: 359 TNAEFAVGEAETVI-P-KWYEEGITADTLVVDPPRKGCDEALLRTI 402
Score = 107 (42.7 bits), Expect = 8.1e-17, Sum P(2) = 8.1e-17
Identities = 31/130 (23%), Positives = 59/130 (45%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDFTFDSCR-LYG----WRCRAK 105
CP ++ C GC + + ++ + D + IG LD + + G W R K
Sbjct: 77 CPIYKQCGGCQLQHMTYEGQLLFKQKQVKDVLERIGKLDLSKVTVHPTLGMEDPWNYRNK 136
Query: 106 LAVR-GTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
V G L+ G YQ+ +H+++D+ C + + AV+ ++ V+ Y+E+
Sbjct: 137 AQVPVGEREGGLVAGFYQQRSHDIIDMSACLIQQSKNDEAVQAVKDICANYGVKAYNEER 196
Query: 164 RTGDLRYVQM 173
G LR++ +
Sbjct: 197 HKGWLRHIMV 206
>TIGR_CMR|BA_0333 [details] [associations]
symbol:BA_0333 "RNA methyltransferase, TrmA family"
species:198094 "Bacillus anthracis str. Ames" [GO:0008175 "tRNA
methyltransferase activity" evidence=ISS] [GO:0009451 "RNA
modification" evidence=ISS] InterPro:IPR001566 InterPro:IPR003402
InterPro:IPR010280 Pfam:PF02475 Pfam:PF05958 PROSITE:PS01230
PROSITE:PS01231 GO:GO:0046872 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0051539 GO:GO:0003723 GO:GO:0006396
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG2265 TIGRFAMs:TIGR00479 GO:GO:0008173 GO:GO:0001510
InterPro:IPR002792 PROSITE:PS50926 Pfam:PF01938
HOGENOM:HOG000029867 KO:K03215 OMA:FFQVNPV ProtClustDB:CLSK872793
RefSeq:NP_842880.1 RefSeq:YP_016949.1 RefSeq:YP_026598.1
ProteinModelPortal:Q81ZD6 IntAct:Q81ZD6 DNASU:1086870
EnsemblBacteria:EBBACT00000008764 EnsemblBacteria:EBBACT00000018128
EnsemblBacteria:EBBACT00000020474 GeneID:1086870 GeneID:2816104
GeneID:2852228 KEGG:ban:BA_0333 KEGG:bar:GBAA_0333 KEGG:bat:BAS0318
BioCyc:BANT260799:GJAJ-360-MONOMER
BioCyc:BANT261594:GJ7F-370-MONOMER Uniprot:Q81ZD6
Length = 458
Score = 161 (61.7 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 59/208 (28%), Positives = 98/208 (47%)
Query: 189 RNGKV--QITLVWNSRNEKSPNSDKL-ESLAEFLWRNGGSRSREHYIHSVWANFQTSTNN 245
R G+V +I LV+ +R + PN + E +A ++ E + S+ N N
Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIA--------AKFPE--VKSIVQNVNPKRTN 256
Query: 246 VIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDL 305
VIFG++ L G ++ +G I +++ SF Q N +L K +Y + T +
Sbjct: 257 VIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVI 316
Query: 306 YAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL 365
A G+ +SL A+K + V VEI E+ + K + L + A+ I P
Sbjct: 317 DAYCGIGSISLFLAQKAKKVYGVEIVPEA-IEDAKRNAALNNMTNAEFGVGEAEVVI-PK 374
Query: 366 SWLVG--SDVLVVDPPRKGLDSSLVHAL 391
+ G +D +VVDPPRKG D +L++ +
Sbjct: 375 WYKEGVIADTMVVDPPRKGCDEALLNTI 402
Score = 93 (37.8 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 43/175 (24%), Positives = 74/175 (42%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLL-DFTFDSC--RLYGWRCRA 104
+CP + C GC T+E L + D + IG L D W R
Sbjct: 78 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRN 135
Query: 105 KLAVR-GTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
K V G L+ G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLA 216
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA 237
>UNIPROTKB|Q8U1N4 [details] [associations]
symbol:PF1172 "tRNA (uracil(54)-C(5))-methyltransferase"
species:186497 "Pyrococcus furiosus DSM 3638" [GO:0030488 "tRNA
methylation" evidence=ISS] [GO:0030697
"S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase
activity" evidence=ISS] InterPro:IPR001566 InterPro:IPR010280
Pfam:PF05958 PROSITE:PS01230 PROSITE:PS01231 GO:GO:0046872
GO:GO:0051539 GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340
eggNOG:COG2265 HOGENOM:HOG000029870 ProtClustDB:CLSK253194
TIGRFAMs:TIGR00479 EMBL:AE009950 GenomeReviews:AE009950_GR
OMA:YPAQLRF GO:GO:0030697 RefSeq:NP_578901.1
ProteinModelPortal:Q8U1N4 SMR:Q8U1N4 PRIDE:Q8U1N4 DNASU:1469041
EnsemblBacteria:EBPYRT00000004407 GeneID:1469041 KEGG:pfu:PF1172
Uniprot:Q8U1N4
Length = 411
Score = 131 (51.2 bits), Expect = 9.0e-13, Sum P(3) = 9.0e-13
Identities = 42/166 (25%), Positives = 80/166 (48%)
Query: 231 YIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLR 290
+ S++ + S ++V +G+ ++ G+ E + G+ + P+SF Q N+ L++
Sbjct: 207 FADSIYWSINRSKSDVSYGDIEKYW-GKEFIMEELDGVKYLIHPNSFFQTNSYQAVNLVK 265
Query: 291 KLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLP-KSV 349
++K+V G V D+Y+G G G+ LA + +K V + + + E +V
Sbjct: 266 TVEKFVE-GEKVVDMYSGVGTFGVYLAK----KGMKVVGFDSNA-FAIEMANKNAEINNV 319
Query: 350 DGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIG 395
+ + +D ++ + G D ++VDPPR GL LV L G
Sbjct: 320 EAEF-FVASDREVD----IKGFDTVIVDPPRAGLHPKLVKRLNDHG 360
Score = 97 (39.2 bits), Expect = 9.0e-13, Sum P(3) = 9.0e-13
Identities = 34/120 (28%), Positives = 53/120 (44%)
Query: 53 QCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTS 112
+C F C GC + + + + K +G S R++G R R LAV
Sbjct: 61 RCKVFGKCGGCILQHINYNSQLEFKKEKLRKILGREVEIIPSPRIFGHRNRIDLAV---- 116
Query: 113 TSPLIGLYQEGTH-NVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYV 171
T IG ++G +VVD+ C A+E LR+ I+E V + + +G LRY+
Sbjct: 117 TVNAIGFREKGKWWSVVDVEECPVFGKTSKKAIERLREYIEEEKVSTWKIREDSGFLRYM 176
Score = 52 (23.4 bits), Expect = 9.0e-13, Sum P(3) = 9.0e-13
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 438 NQSLPQTLIYISCGWESFK 456
N P+T++Y+SC ++FK
Sbjct: 357 NDHGPETIVYVSCNPKTFK 375
>UNIPROTKB|O58994 [details] [associations]
symbol:PH1259 "23S rRNA
(uracil(747)-C(5))-methyltransferase" species:70601 "Pyrococcus
horikoshii OT3" [GO:0031167 "rRNA methylation" evidence=ISS]
[GO:0070041 "rRNA (uridine-C5-)-methyltransferase activity"
evidence=ISS] InterPro:IPR001566 InterPro:IPR010280 Pfam:PF05958
PROSITE:PS01230 PROSITE:PS01231 GO:GO:0046872 GO:GO:0051539
GO:GO:0003723 EMBL:BA000001 GenomeReviews:BA000001_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG2265 HOGENOM:HOG000029870 OMA:GCLWQGL
ProtClustDB:CLSK253194 GO:GO:0070041 InterPro:IPR015985
Pfam:PF03848 TIGRFAMs:TIGR00479 PIR:G71070 RefSeq:NP_143152.1
ProteinModelPortal:O58994 EnsemblBacteria:EBPYRT00000001556
GeneID:1443583 KEGG:pho:PH1259 BioCyc:PHOR70601:GJWR-1256-MONOMER
Uniprot:O58994
Length = 412
Score = 149 (57.5 bits), Expect = 2.0e-12, Sum P(3) = 2.0e-12
Identities = 46/129 (35%), Positives = 69/129 (53%)
Query: 255 LLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGL 314
+LG E V GI + PS F Q N+ A +LL+ ++K+ G+ V DLY+G G L
Sbjct: 231 VLGNEVIREKVEGITYLIHPSVFFQTNSYALPLLLKSVEKFCE-GSKVLDLYSGIGT--L 287
Query: 315 SLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVL 374
SL A++ V VE+N S + K + + S++ A+++ E L G + L
Sbjct: 288 SLYLAKRGFEVTGVEVNGTS-VEMAKRSAEI-NSINATFIQGKAEDA-E----LEGYETL 340
Query: 375 VVDPPRKGL 383
+VDPPRKGL
Sbjct: 341 IVDPPRKGL 349
Score = 82 (33.9 bits), Expect = 2.0e-12, Sum P(3) = 2.0e-12
Identities = 30/122 (24%), Positives = 56/122 (45%)
Query: 53 QCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTS 112
+C HF C GC + +R + + F + G+ S R++ +R + +
Sbjct: 62 KCSHFGKCGGCLWQGLRYREQLKLKEEIFKRITGIEAEIKGSPRIWYFRNISNFII---- 117
Query: 113 TSPLIGLYQEGT-HNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYV 171
T IG + G VV+I C R ++ L+ ++E N++P++ R GD+ Y+
Sbjct: 118 TVNGIGFKEFGMPKTVVNIRECPIFSERTPKYLKALKDFLRESNLKPWNW--REGDVHYL 175
Query: 172 QM 173
Q+
Sbjct: 176 QV 177
Score = 43 (20.2 bits), Expect = 2.0e-12, Sum P(3) = 2.0e-12
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 442 PQTLIYISC 450
P TLIY+SC
Sbjct: 361 PNTLIYVSC 369
>UNIPROTKB|Q9UZK1 [details] [associations]
symbol:PYRAB11450 "23S rRNA
(uracil(747)-C(5))-methyltransferase" species:272844 "Pyrococcus
abyssi GE5" [GO:0031167 "rRNA methylation" evidence=IDA]
[GO:0070041 "rRNA (uridine-C5-)-methyltransferase activity"
evidence=IDA] InterPro:IPR001566 InterPro:IPR010280 Pfam:PF05958
PROSITE:PS01230 PROSITE:PS01231 GO:GO:0046872 GO:GO:0051539
GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340 EMBL:AJ248286
EMBL:HE613800 PIR:C75094 RefSeq:NP_126826.1
ProteinModelPortal:Q9UZK1 EnsemblBacteria:EBPYRT00000002314
GeneID:1496508 GenomeReviews:AL096836_GR KEGG:pab:PAB0760
eggNOG:COG2265 HOGENOM:HOG000029870 OMA:GCLWQGL
ProtClustDB:CLSK253194 GO:GO:0070041 InterPro:IPR015985
Pfam:PF03848 TIGRFAMs:TIGR00479 Uniprot:Q9UZK1
Length = 410
Score = 148 (57.2 bits), Expect = 6.6e-11, Sum P(3) = 6.6e-11
Identities = 43/121 (35%), Positives = 67/121 (55%)
Query: 263 ENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKC 322
E++ G+ + PS+F Q N+ A ILL+ ++ + G+ V DLY+G G L LA +K
Sbjct: 237 ESIEGLVYLIHPSTFFQTNSYALPILLKAVESFAE-GSKVLDLYSGVGTFSLYLA--KKG 293
Query: 323 RSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKG 382
V VE+N+ES +K+ S+D + A+++ L G + L+VDPPRKG
Sbjct: 294 FEVTGVEVNEESVRVAKKSAE--VNSLDVSFIPGRAEDAK-----LKGYETLIVDPPRKG 346
Query: 383 L 383
L
Sbjct: 347 L 347
Score = 69 (29.3 bits), Expect = 6.6e-11, Sum P(3) = 6.6e-11
Identities = 26/122 (21%), Positives = 53/122 (43%)
Query: 53 QCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTS 112
+C +F C GC + +R + + F + G+ S R++ +R + V
Sbjct: 60 KCRYFGRCGGCLWQGLKYREQLKLKEEIFKRVTGVEAEIKGSPRIWFFRNISNFIV---- 115
Query: 113 TSPLIGLYQEGT-HNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYV 171
T IG + G VV + C R + +++ ++E + P++ + GD+ Y+
Sbjct: 116 TVNGIGFKEFGMPRTVVSVDECPVFSERTKLYIRAMKRFLRETGLNPWNW--KNGDVHYL 173
Query: 172 QM 173
Q+
Sbjct: 174 QV 175
Score = 42 (19.8 bits), Expect = 6.6e-11, Sum P(3) = 6.6e-11
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 442 PQTLIYISCGWESF 455
P+ LIY+SC F
Sbjct: 359 PENLIYVSCNPSKF 372
>UNIPROTKB|Q8U2K7 [details] [associations]
symbol:PF0827 "23S rRNA
(uracil(747)-C(5))-methyltransferase" species:186497 "Pyrococcus
furiosus DSM 3638" [GO:0031167 "rRNA methylation" evidence=ISS]
[GO:0070041 "rRNA (uridine-C5-)-methyltransferase activity"
evidence=ISS] InterPro:IPR001566 InterPro:IPR010280 Pfam:PF05958
PROSITE:PS01230 PROSITE:PS01231 GO:GO:0046872 GO:GO:0051539
GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG2265
HOGENOM:HOG000029870 ProtClustDB:CLSK253194 GO:GO:0070041
TIGRFAMs:TIGR00479 EMBL:AE009950 RefSeq:NP_578556.1
ProteinModelPortal:Q8U2K7 PRIDE:Q8U2K7
EnsemblBacteria:EBPYRT00000005959 GeneID:1468683
GenomeReviews:AE009950_GR KEGG:pfu:PF0827 OMA:VECRILE
Uniprot:Q8U2K7
Length = 409
Score = 143 (55.4 bits), Expect = 3.2e-10, Sum P(3) = 3.2e-10
Identities = 47/130 (36%), Positives = 69/130 (53%)
Query: 256 LGETDFW-ENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGL 314
LGE +F E + GI L P F Q N+ A +LL+ ++ ++ G+ V DLY+G G L
Sbjct: 227 LGEKEFISEKIFGIKYLLRPGIFFQTNSYALPLLLKAVEGFLD-GSKVLDLYSGIGTFSL 285
Query: 315 SLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADN-SIEPLSWLVGSDV 373
L +K +V VEINK + + K + L S++ A+ +IE G D
Sbjct: 286 YLT--KKGFNVVGVEINKTA-VEVAKLSAEL-NSLNVEFKAKRAEEENIE------GYDA 335
Query: 374 LVVDPPRKGL 383
L++DPPRKGL
Sbjct: 336 LILDPPRKGL 345
Score = 72 (30.4 bits), Expect = 3.2e-10, Sum P(3) = 3.2e-10
Identities = 25/122 (20%), Positives = 53/122 (43%)
Query: 53 QCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTS 112
+C H+ C GC + + + + F + G+ S R++ +R + V
Sbjct: 60 RCRHYGKCGGCLWQGMKYEEQLKFKKELFRRITGIEAEILGSPRIWEFRNISNFIVSVNG 119
Query: 113 TSPLIGLYQEGT-HNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYV 171
IGL + VVD+ C R + +++ ++E ++P++ + GD+ Y+
Sbjct: 120 ----IGLKEFARPKTVVDLKECPVFSNRTPLYIRAMKEFLRESGLKPWNWKE--GDVHYL 173
Query: 172 QM 173
Q+
Sbjct: 174 QV 175
Score = 38 (18.4 bits), Expect = 3.2e-10, Sum P(3) = 3.2e-10
Identities = 5/14 (35%), Positives = 10/14 (71%)
Query: 442 PQTLIYISCGWESF 455
P+ ++Y+SC + F
Sbjct: 357 PENVVYVSCNPKRF 370
>UNIPROTKB|F1RHM9 [details] [associations]
symbol:TRMT2A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008173 "RNA methyltransferase activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR010280 InterPro:IPR012677
Pfam:PF05958 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006396
GO:GO:0008173 GO:GO:0001510 GeneTree:ENSGT00530000063723
OMA:YFHPQKL EMBL:CT737345 UniGene:Ssc.15617
Ensembl:ENSSSCT00000011097 Uniprot:F1RHM9
Length = 620
Score = 169 (64.5 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 73/285 (25%), Positives = 131/285 (45%)
Query: 117 IGLYQEGTHNVVDIPHCKAHHPRINA-AVELLRQGIKELNVEPYDEDDRTGDLRYVQMAV 175
+G Y+ GT V P H P V+ ++ I+ YD + +G + Q+ V
Sbjct: 257 LGKYKGGTCAVA-APFDTVHIPTATKQVVKAFQEFIRSTPYSAYDPETYSG--HWKQLTV 313
Query: 176 TTYNTSLPASERYRNGKVQITLVWNSRNEKSPN--SDKLESLAEFLWRNGGSRSREHYIH 233
T R G+ + + + + SP + SLA+ G S ++
Sbjct: 314 RTS----------RRGQA-MAIAYFHPQKLSPEELAGLKASLAQHFTTGPGKASGVTCLY 362
Query: 234 SVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQ 293
V + + + G H+ G+ +E++ G+ ++P +F Q NT A ++L +Q
Sbjct: 363 FVEEGQRKTPSQE--GLPLEHVAGDQCIYEDLLGLTFRISPHAFFQVNTPAAEVLYTVIQ 420
Query: 294 KYVPY--GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDG 351
+ G++V D+ G G IGL+LA RK + V VE+++E+ + V+ L +
Sbjct: 421 DWAQLDTGSTVLDVCCGTGTIGLALA--RKVKRVVGVELSQEAV--DDARVNALDNELS- 475
Query: 352 NISWH--NADNSIEPLSWLVGSDVLV--VDPPRKGLDSSLVHALQ 392
N+ +H A++ + PL + S LV +DPPR GL S ++ A++
Sbjct: 476 NVEFHCGRAEDLVPPLVSRLASQQLVAILDPPRAGLHSKVILAVR 520
>UNIPROTKB|F1P0L5 [details] [associations]
symbol:TRMT2A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0008173 "RNA methyltransferase
activity" evidence=IEA] InterPro:IPR000504 InterPro:IPR010280
InterPro:IPR012677 Pfam:PF05958 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006396
GO:GO:0008173 GO:GO:0001510 GeneTree:ENSGT00530000063723
OMA:YFHPQKL EMBL:AADN02034792 IPI:IPI00591239
ProteinModelPortal:F1P0L5 Ensembl:ENSGALT00000003266 Uniprot:F1P0L5
Length = 615
Score = 167 (63.8 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 67/284 (23%), Positives = 131/284 (46%)
Query: 117 IGLYQEGTHNVVDIPHCKAHHPRI-NAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAV 175
+G Y+ GT VV+ P H P + V+ + I+ Y + G + Q+ V
Sbjct: 233 LGKYKGGTCAVVE-PFDTIHIPAVAKKVVKAFQDYIRSTPYSVYSPETYEG--HWKQLTV 289
Query: 176 TTYNTSLPASERYRNGKVQITLVWNSRN-EKSPNSDKLESLAEFLWRNGGSRSREHYIHS 234
T RNG + + +N + + +D +LA+ G S ++
Sbjct: 290 RTS----------RNGHIMAIVYFNPQKLSREELADLKAALAKHFTEGAGKESGITSLYF 339
Query: 235 VWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQK 294
V + S N + H+ G+ +E + G+ ++P +F Q NT+A ++L +++
Sbjct: 340 VEEGQRKSPN--LEDLPLEHVAGDKYIYEELLGLKFRISPHAFFQVNTQAAEVLYAAIRE 397
Query: 295 YVPYG--ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGN 352
+ ++V D+ G G IG+SLA +K + V +E+ +E+ + K +++ + N
Sbjct: 398 WAQLSQESTVLDICCGTGTIGISLA--KKVKKVIGIELCQEA-VQDAKANAQINEL--SN 452
Query: 353 ISWH--NADNSIEPLSWLVGSD--VLVVDPPRKGLDSSLVHALQ 392
I +H A++ + L ++ + +VDPPR GL S ++ A++
Sbjct: 453 IEFHCGKAEDIVPSLINILAPQNLITIVDPPRAGLHSRVILAIR 496
>UNIPROTKB|E1BMX2 [details] [associations]
symbol:TRMT2A "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008173 "RNA methyltransferase activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR010280 InterPro:IPR012677
Pfam:PF05958 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006396
GO:GO:0008173 GO:GO:0001510 GeneTree:ENSGT00530000063723
OMA:YFHPQKL EMBL:DAAA02045786 EMBL:DAAA02045787 IPI:IPI00694530
ProteinModelPortal:E1BMX2 Ensembl:ENSBTAT00000026476 Uniprot:E1BMX2
Length = 591
Score = 164 (62.8 bits), Expect = 6.5e-09, P = 6.5e-09
Identities = 73/281 (25%), Positives = 124/281 (44%)
Query: 120 YQEGTHNVVDIPHCKAHHP-RINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTY 178
Y+ GT V P H P V ++ I+ YD + +G + Q+ V T
Sbjct: 231 YKSGTCAVA-APFDTVHIPGATKQVVRAFQEFIRSTPYSAYDPETYSG--HWKQLTVRTS 287
Query: 179 NTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLE-SLAEFLWRNGGSRSREHYIHSVWA 237
R G+ ++ +N L+ SLA++ G S ++ V
Sbjct: 288 ----------RRGQAMAIAYFHPQNLSPEELAGLKTSLAQYFMEGPGKASGVTCLYFVEE 337
Query: 238 NFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVP 297
+ + + G H+ G+ E+V G+ ++P +F Q NT A ++L +Q +
Sbjct: 338 GQRKTPSQE--GLPLEHVAGDRCIREDVLGLTFRISPHAFFQVNTAAAEVLYTLIQDWAQ 395
Query: 298 Y--GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISW 355
G++V D+ G G IGL+LA RK + V VE+++E+ + V+ L + N+ +
Sbjct: 396 LDAGSTVLDVCCGTGTIGLALA--RKVKRVVGVELSQEAVE--DARVNALDNELS-NVEF 450
Query: 356 H--NADNSIEPLSWLVGSDVLV--VDPPRKGLDSSLVHALQ 392
H A+ + L + S LV +DPPR GL S V A++
Sbjct: 451 HCGRAEELVPALVSRLASQQLVAILDPPRAGLHSKAVLAVR 491
>TIGR_CMR|SO_0980 [details] [associations]
symbol:SO_0980 "RNA methyltransferase, TrmA family"
species:211586 "Shewanella oneidensis MR-1" [GO:0001510 "RNA
methylation" evidence=ISS] [GO:0008173 "RNA methyltransferase
activity" evidence=ISS] HAMAP:MF_01012 InterPro:IPR001566
InterPro:IPR010280 InterPro:IPR011825 Pfam:PF05958 PROSITE:PS01230
PROSITE:PS01231 GO:GO:0046872 GO:GO:0051539 GO:GO:0003723
EMBL:AE014299 GenomeReviews:AE014299_GR eggNOG:COG2265
TIGRFAMs:TIGR00479 GO:GO:0001510 HOGENOM:HOG000218547 KO:K03212
OMA:QPQHAAI ProtClustDB:PRK03522 GO:GO:0016436 TIGRFAMs:TIGR02085
RefSeq:NP_716609.2 ProteinModelPortal:Q8EI67 GeneID:1168823
KEGG:son:SO_0980 PATRIC:23521611 Uniprot:Q8EI67
Length = 386
Score = 102 (41.0 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 42/164 (25%), Positives = 76/164 (46%)
Query: 232 IHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRK 291
I+ V N Q ++ G+ L T E + + + P SF Q N L +
Sbjct: 172 INVVSVNIQPIHMAILEGDEEIFLTENTRLEERFNDVPLFIRPKSFFQTNPHVAAKLYQT 231
Query: 292 LQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSV 349
+++V A S+ DL+ G G G L A K + +EI E+ ++ K +++ +
Sbjct: 232 AREWVGEFAPKSLWDLFCGVG--GFGLHCASKDIPLTGIEIEAEA-IACAKMSAQM-MGL 287
Query: 350 DGNISWHNADNS--IEPLSWLVGSDVLVVDPPRKGLDSSLVHAL 391
D N+ + D++ + + D+++V+PPR+G+ SL AL
Sbjct: 288 D-NVQFMALDSTDFAKGDAAATKPDLIIVNPPRRGIGESLCDAL 330
Score = 92 (37.4 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 29/121 (23%), Positives = 54/121 (44%)
Query: 52 LQCPHFQSCSGCTHEFN-LHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRG 110
++ P Q + T E L P +V T F + DS G+R +AK+ V G
Sbjct: 21 IKLPMVQQLAAKTQELQQLLAPFVVSTNTQFLPPV----VGEDS----GFRNKAKMVVLG 72
Query: 111 TSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRY 170
+ +P++G+ V + C + + A + L + +++ + PY D G+L+Y
Sbjct: 73 AAHAPVLGIVSPNGE-AVSLCDCLLYPADMQALLYRLERFVQQAGIPPYRIDKAKGELKY 131
Query: 171 V 171
+
Sbjct: 132 I 132
>UNIPROTKB|Q8IZ69 [details] [associations]
symbol:TRMT2A "tRNA (uracil-5-)-methyltransferase homolog
A" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0008173 "RNA methyltransferase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR010280 InterPro:IPR012677 Pfam:PF05958 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006396 EMBL:CH471176 eggNOG:COG2265 GO:GO:0008173 KO:K15332
GO:GO:0001510 EMBL:AC006547 UniGene:Hs.713579 EMBL:CR456354
EMBL:AK025106 EMBL:AK057029 EMBL:BC013352 EMBL:BC017184
EMBL:BC108251 IPI:IPI00337307 IPI:IPI00472176 RefSeq:NP_001244923.1
RefSeq:NP_073564.3 RefSeq:NP_892029.2 ProteinModelPortal:Q8IZ69
SMR:Q8IZ69 IntAct:Q8IZ69 STRING:Q8IZ69 PhosphoSite:Q8IZ69
DMDM:51316479 PaxDb:Q8IZ69 PRIDE:Q8IZ69 DNASU:27037
Ensembl:ENST00000252136 Ensembl:ENST00000403707
Ensembl:ENST00000404751 GeneID:27037 KEGG:hsa:27037 UCSC:uc002zrk.1
CTD:27037 GeneCards:GC22M020099 HGNC:HGNC:24974 HPA:HPA001077
MIM:611151 neXtProt:NX_Q8IZ69 PharmGKB:PA164726751
HOGENOM:HOG000232103 HOVERGEN:HBG052043 OrthoDB:EOG4RNB84
PhylomeDB:Q8IZ69 ChiTaRS:TRMT2A GenomeRNAi:27037 NextBio:49598
ArrayExpress:Q8IZ69 Bgee:Q8IZ69 CleanEx:HS_TRMT2A
Genevestigator:Q8IZ69 GermOnline:ENSG00000099899 Uniprot:Q8IZ69
Length = 625
Score = 151 (58.2 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 71/285 (24%), Positives = 127/285 (44%)
Query: 117 IGLYQEGTHNVVDIPHCKAHHPRINA-AVELLRQGIKELNVEPYDEDDRTGDLRYVQMAV 175
+G Y+ GT V P H P V+ ++ I+ YD + TG + Q+ V
Sbjct: 262 LGKYKGGTCAVA-APFDTVHIPEATKQVVKAFQEFIRSTPYSAYDPETYTG--HWKQLTV 318
Query: 176 TTYNTSLPASERYRNGKVQITLVWNSRNEKSPN--SDKLESLAEFLWRNGGSRSREHYIH 233
T S R++ + + + + SP ++ SLA+ G S ++
Sbjct: 319 RT-------SRRHQ----AMAIAYFHPQKLSPEELAELKTSLAQHFTAGPGRASGVTCLY 367
Query: 234 SVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQ 293
V + + + G H+ G+ E++ G+ ++P +F Q NT A ++L +Q
Sbjct: 368 FVEEGQRKTPSQE--GLPLEHVAGDRCIHEDLLGLTFRISPHAFFQVNTPAAEVLYTVIQ 425
Query: 294 KYVPY--GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDG 351
+ G+ V D+ G G IGL+LA RK + V VE+ E+ + V+ +
Sbjct: 426 DWAQLDAGSMVLDVCCGTGTIGLALA--RKVKRVIGVELCPEAVE--DARVNAQDNELS- 480
Query: 352 NISWH--NADNSIEPLSWLVGSD--VLVVDPPRKGLDSSLVHALQ 392
N+ +H A++ + L + S V ++DPPR GL S ++ A++
Sbjct: 481 NVEFHCGRAEDLVPTLVSRLASQHLVAILDPPRAGLHSKVILAIR 525
>UNIPROTKB|Q9KL20 [details] [associations]
symbol:rlmC "23S rRNA (uracil(747)-C(5))-methyltransferase
RlmC" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0009451 "RNA modification" evidence=ISS] HAMAP:MF_01012
InterPro:IPR010280 InterPro:IPR011825 Pfam:PF05958 PROSITE:PS01230
PROSITE:PS01231 GO:GO:0046872 GO:GO:0051539 EMBL:AE003853
GenomeReviews:AE003853_GR eggNOG:COG2265 GO:GO:0001510 KO:K03212
OMA:QPQHAAI ProtClustDB:PRK03522 GO:GO:0016436 TIGRFAMs:TIGR02085
PIR:A82399 RefSeq:NP_233314.1 ProteinModelPortal:Q9KL20
DNASU:2612926 GeneID:2612926 KEGG:vch:VCA0929 PATRIC:20086390
Uniprot:Q9KL20
Length = 375
Score = 114 (45.2 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 38/142 (26%), Positives = 71/142 (50%)
Query: 256 LGETD-FWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVI 312
L ET E+ + + + P SF Q N + + L + +V A + DL+ G G
Sbjct: 188 LTETQSLLEHFNDVPMVIRPKSFFQTNPKVAEQLYATARTWVREIAPTQMWDLFCGVG-- 245
Query: 313 GLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSD 372
G +L A +V +EI E+ S +++ + +D N+S+ D++ S + +
Sbjct: 246 GFALHCAAPDTAVTGIEIEPEAIASAQRSAQMM--GID-NLSFAALDSAKFSQSQMSAPE 302
Query: 373 VLVVDPPRKGLDSSLVHALQSI 394
+++V+PPR+GL S L L+++
Sbjct: 303 LVLVNPPRRGLGSELTAQLEAL 324
Score = 72 (30.4 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 14/72 (19%), Positives = 38/72 (52%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +AK+ V G + +P++G+ ++ + + C + + + L I+ + PY
Sbjct: 55 FRNKAKMVVLGAAHAPILGI-EDAQGQPLSLVTCPLYPQPMQELLAYLENWIRIAGIPPY 113
Query: 160 DEDDRTGDLRYV 171
++ + G+L+++
Sbjct: 114 NKLKKKGELKFI 125
>TIGR_CMR|VC_A0929 [details] [associations]
symbol:VC_A0929 "TrmA family RNA methyltransferase,
putative" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0009451 "RNA modification" evidence=ISS] HAMAP:MF_01012
InterPro:IPR010280 InterPro:IPR011825 Pfam:PF05958 PROSITE:PS01230
PROSITE:PS01231 GO:GO:0046872 GO:GO:0051539 EMBL:AE003853
GenomeReviews:AE003853_GR eggNOG:COG2265 GO:GO:0001510 KO:K03212
OMA:QPQHAAI ProtClustDB:PRK03522 GO:GO:0016436 TIGRFAMs:TIGR02085
PIR:A82399 RefSeq:NP_233314.1 ProteinModelPortal:Q9KL20
DNASU:2612926 GeneID:2612926 KEGG:vch:VCA0929 PATRIC:20086390
Uniprot:Q9KL20
Length = 375
Score = 114 (45.2 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 38/142 (26%), Positives = 71/142 (50%)
Query: 256 LGETD-FWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVI 312
L ET E+ + + + P SF Q N + + L + +V A + DL+ G G
Sbjct: 188 LTETQSLLEHFNDVPMVIRPKSFFQTNPKVAEQLYATARTWVREIAPTQMWDLFCGVG-- 245
Query: 313 GLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSD 372
G +L A +V +EI E+ S +++ + +D N+S+ D++ S + +
Sbjct: 246 GFALHCAAPDTAVTGIEIEPEAIASAQRSAQMM--GID-NLSFAALDSAKFSQSQMSAPE 302
Query: 373 VLVVDPPRKGLDSSLVHALQSI 394
+++V+PPR+GL S L L+++
Sbjct: 303 LVLVNPPRRGLGSELTAQLEAL 324
Score = 72 (30.4 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 14/72 (19%), Positives = 38/72 (52%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +AK+ V G + +P++G+ ++ + + C + + + L I+ + PY
Sbjct: 55 FRNKAKMVVLGAAHAPILGI-EDAQGQPLSLVTCPLYPQPMQELLAYLENWIRIAGIPPY 113
Query: 160 DEDDRTGDLRYV 171
++ + G+L+++
Sbjct: 114 NKLKKKGELKFI 125
>UNIPROTKB|F1M569 [details] [associations]
symbol:Trmt2a "Protein Trmt2a" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0008173 "RNA methyltransferase
activity" evidence=IEA] InterPro:IPR000504 InterPro:IPR010280
InterPro:IPR012677 Pfam:PF05958 PROSITE:PS50102 SMART:SM00360
RGD:1310418 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 IPI:IPI00776864
Ensembl:ENSRNOT00000002580 ArrayExpress:F1M569 Uniprot:F1M569
Length = 614
Score = 146 (56.5 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 69/284 (24%), Positives = 126/284 (44%)
Query: 117 IGLYQEGTHNVVDIPHCKAHHPRINAA-VELLRQGIKELNVEPYDEDDRTGDLRYVQMAV 175
+G Y+ GT V P H P+ V+ ++ I+ YD + TG + Q+ V
Sbjct: 252 LGKYKGGTCAVAP-PFDTVHIPQATKQLVKAFQEFIRSTPYSAYDPETYTG--HWKQLTV 308
Query: 176 TTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLE-SLAEFLWRNGGSRSREHYIHS 234
T R G+ ++ + S L+ SL G S ++
Sbjct: 309 RTS----------RRGQAMAIAHFHPQKLSSEEVAGLKASLVCHFMEGPGKASGVTSLYF 358
Query: 235 VWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQK 294
V + + + G H+ G+ E++ G+ ++P +F Q NT A ++L +Q+
Sbjct: 359 VEEGQRKTPSQE--GLPLEHMAGDQCIQEDLLGLTFRISPHAFFQVNTPAAEVLYTVIQE 416
Query: 295 YVPY--GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGN 352
+ G++V D+ G G IGL+LA K + V +E+ +E+ + ++ L + N
Sbjct: 417 WAQLDGGSTVLDVCCGTGTIGLALAP--KVKKVIGIELCQEAVE--DARMNALTNELS-N 471
Query: 353 ISWH--NADNSIEPLSWLVGSD--VLVVDPPRKGLDSSLVHALQ 392
+ +H A++ + L + S V V+DPPR GL S ++ A++
Sbjct: 472 VEFHCGRAEDLVPGLVSKLSSQQLVAVLDPPRAGLHSKVILAMR 515
>RGD|1310418 [details] [associations]
symbol:Trmt2a "tRNA methyltransferase 2 homolog A (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0008173 "RNA methyltransferase activity" evidence=IEA]
InterPro:IPR000504 InterPro:IPR010280 InterPro:IPR012677
Pfam:PF05958 PROSITE:PS50102 SMART:SM00360 RGD:1310418
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006396
eggNOG:COG2265 GO:GO:0008173 KO:K15332 GO:GO:0001510 EMBL:CH473999
CTD:27037 HOGENOM:HOG000232103 HOVERGEN:HBG052043 OrthoDB:EOG4RNB84
GeneTree:ENSGT00530000063723 EMBL:BC083619 IPI:IPI00391873
RefSeq:NP_001011895.1 UniGene:Rn.60258 Ensembl:ENSRNOT00000046183
GeneID:287953 KEGG:rno:287953 NextBio:627290 Genevestigator:Q5XIQ6
Uniprot:Q5XIQ6
Length = 615
Score = 146 (56.5 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 69/284 (24%), Positives = 126/284 (44%)
Query: 117 IGLYQEGTHNVVDIPHCKAHHPRINAA-VELLRQGIKELNVEPYDEDDRTGDLRYVQMAV 175
+G Y+ GT V P H P+ V+ ++ I+ YD + TG + Q+ V
Sbjct: 253 LGKYKGGTCAVAP-PFDTVHIPQATKQLVKAFQEFIRSTPYSAYDPETYTG--HWKQLTV 309
Query: 176 TTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLE-SLAEFLWRNGGSRSREHYIHS 234
T R G+ ++ + S L+ SL G S ++
Sbjct: 310 RTS----------RRGQAMAIAHFHPQKLSSEEVAGLKASLVCHFMEGPGKASGVTSLYF 359
Query: 235 VWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQK 294
V + + + G H+ G+ E++ G+ ++P +F Q NT A ++L +Q+
Sbjct: 360 VEEGQRKTPSQE--GLPLEHMAGDQCIQEDLLGLTFRISPHAFFQVNTPAAEVLYTVIQE 417
Query: 295 YVPY--GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGN 352
+ G++V D+ G G IGL+LA K + V +E+ +E+ + ++ L + N
Sbjct: 418 WAQLDGGSTVLDVCCGTGTIGLALAP--KVKKVIGIELCQEAVE--DARMNALTNELS-N 472
Query: 353 ISWH--NADNSIEPLSWLVGSD--VLVVDPPRKGLDSSLVHALQ 392
+ +H A++ + L + S V V+DPPR GL S ++ A++
Sbjct: 473 VEFHCGRAEDLVPGLVSKLSSQQLVAVLDPPRAGLHSKVILAMR 516
>UNIPROTKB|D4A993 [details] [associations]
symbol:Trmt2a "Protein Trmt2a" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0008173 "RNA methyltransferase
activity" evidence=IEA] InterPro:IPR000504 InterPro:IPR010280
InterPro:IPR012677 Pfam:PF05958 PROSITE:PS50102 SMART:SM00360
RGD:1310418 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 IPI:IPI00952015
Ensembl:ENSRNOT00000068114 ArrayExpress:D4A993 Uniprot:D4A993
Length = 627
Score = 146 (56.5 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 69/284 (24%), Positives = 126/284 (44%)
Query: 117 IGLYQEGTHNVVDIPHCKAHHPRINAA-VELLRQGIKELNVEPYDEDDRTGDLRYVQMAV 175
+G Y+ GT V P H P+ V+ ++ I+ YD + TG + Q+ V
Sbjct: 253 LGKYKGGTCAVAP-PFDTVHIPQATKQLVKAFQEFIRSTPYSAYDPETYTG--HWKQLTV 309
Query: 176 TTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLE-SLAEFLWRNGGSRSREHYIHS 234
T R G+ ++ + S L+ SL G S ++
Sbjct: 310 RTS----------RRGQAMAIAHFHPQKLSSEEVAGLKASLVCHFMEGPGKASGVTSLYF 359
Query: 235 VWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQK 294
V + + + G H+ G+ E++ G+ ++P +F Q NT A ++L +Q+
Sbjct: 360 VEEGQRKTPSQE--GLPLEHMAGDQCIQEDLLGLTFRISPHAFFQVNTPAAEVLYTVIQE 417
Query: 295 YVPY--GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGN 352
+ G++V D+ G G IGL+LA K + V +E+ +E+ + ++ L + N
Sbjct: 418 WAQLDGGSTVLDVCCGTGTIGLALAP--KVKKVIGIELCQEAVE--DARMNALTNELS-N 472
Query: 353 ISWH--NADNSIEPLSWLVGSD--VLVVDPPRKGLDSSLVHALQ 392
+ +H A++ + L + S V V+DPPR GL S ++ A++
Sbjct: 473 VEFHCGRAEDLVPGLVSKLSSQQLVAVLDPPRAGLHSKVILAMR 516
>UNIPROTKB|Q9UZR7 [details] [associations]
symbol:PYRAB10780 "tRNA
(uracil(54)-C(5))-methyltransferase" species:272844 "Pyrococcus
abyssi GE5" [GO:0030488 "tRNA methylation" evidence=IDA]
[GO:0030697 "S-adenosylmethionine-dependent tRNA (m5U54)
methyltransferase activity" evidence=IDA] InterPro:IPR001566
InterPro:IPR010280 Pfam:PF05958 PROSITE:PS01230 PROSITE:PS01231
GO:GO:0046872 GO:GO:0051539 GO:GO:0003723 Gene3D:2.40.50.140
InterPro:IPR012340 EMBL:AJ248286 EMBL:HE613800
GenomeReviews:AL096836_GR eggNOG:COG2265 HOGENOM:HOG000029870
ProtClustDB:CLSK253194 InterPro:IPR015985 Pfam:PF03848
TIGRFAMs:TIGR00479 PIR:H75085 RefSeq:NP_126758.1 PDB:2JJQ PDB:2VS1
PDBsum:2JJQ PDBsum:2VS1 ProteinModelPortal:Q9UZR7 SMR:Q9UZR7
EnsemblBacteria:EBPYRT00000003914 GeneID:1496434 KEGG:pab:PAB0719
OMA:YPAQLRF EvolutionaryTrace:Q9UZR7 GO:GO:0030697 Uniprot:Q9UZR7
Length = 405
Score = 135 (52.6 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 51/185 (27%), Positives = 87/185 (47%)
Query: 213 ESLAEFLWRNGGSRSREHYIH--SVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDI 270
E + F+ + G +Y S++ + S ++V +G+ R G+ E + +D
Sbjct: 185 EVMVNFVTKEGNLPDPTNYFDFDSIYWSVNRSKSDVSYGDIER-FWGKEFIRERLDDVDY 243
Query: 271 SLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEI 330
+ P+SF Q N+ L+RK+ + V G + D+Y+G G G+ LA ++ +VK +
Sbjct: 244 LIHPNSFFQTNSYQAVNLVRKVSELVE-GEKILDMYSGVGTFGIYLA--KRGFNVKGFDS 300
Query: 331 NKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS----WLVGSDVLVVDPPRKGLDSS 386
N+ F ++R N+ +N D E S + G D ++VDPPR GL
Sbjct: 301 NE-----FAIEMARR------NVEINNVDAEFEVASDREVSVKGFDTVIVDPPRAGLHPR 349
Query: 387 LVHAL 391
LV L
Sbjct: 350 LVKRL 354
Score = 46 (21.3 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 438 NQSLPQTLIYISCGWESF 455
N+ P ++Y+SC E+F
Sbjct: 355 NREKPGVIVYVSCNPETF 372
>TIGR_CMR|CHY_1112 [details] [associations]
symbol:CHY_1112 "23S rRNA (uracil-5-)-methyltransferase
RumA" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0008649 "rRNA
methyltransferase activity" evidence=ISS] InterPro:IPR001566
InterPro:IPR010280 Pfam:PF05958 PROSITE:PS01230 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003723 GO:GO:0006396
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG2265 TIGRFAMs:TIGR00479 GO:GO:0008173 GO:GO:0001510
InterPro:IPR002792 PROSITE:PS50926 Pfam:PF01938
HOGENOM:HOG000029867 KO:K03215 OMA:FFQVNPV RefSeq:YP_359958.1
ProteinModelPortal:Q3AD26 STRING:Q3AD26 GeneID:3727523
KEGG:chy:CHY_1112 PATRIC:21275362 ProtClustDB:CLSK2396891
BioCyc:CHYD246194:GJCN-1111-MONOMER Uniprot:Q3AD26
Length = 441
Score = 108 (43.1 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 43/151 (28%), Positives = 71/151 (47%)
Query: 247 IFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGAS--VTD 304
+FG G E + GI L P SF Q N + + R Y+ G + V D
Sbjct: 241 VFGKGTAVTFGTRYITEELLGISYRLTPLSFFQINPVQAEKIYRIALDYLDLGKTDMVFD 300
Query: 305 LYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP 364
Y+G G L+L AAR SV VE +++ + KT ++L + N+++ A E
Sbjct: 301 GYSGVG--SLTLPAARIAASVVGVEEIRDA-VEVAKTNAKL-NGI-ANVNFF-AGKVEEK 354
Query: 365 LSWLVGS----DVLVVDPPRKGLDSSLVHAL 391
L WL+ + +++DPPR+G+ ++ +
Sbjct: 355 LPWLLKKGYRFNKIILDPPREGVKKEVLEEI 385
Score = 70 (29.7 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 31/134 (23%), Positives = 58/134 (43%)
Query: 53 QCPHFQSCSGCT-HEFNLHRPIIVDEAT--DFFKSIGLLDFTFDSC--RLYGWRCRAKLA 107
+CPHF C GC+ + + +++ + + K IG +D +S +R R K+
Sbjct: 67 RCPHFGYCGGCSLQNLDYEQQLVLKKTKVYNIMKKIGRIDAPINSVLPNFAFYRYRQKVH 126
Query: 108 VR-GTSTSPL-IGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
G+S + L IG Y + +N + C + + + + ++ Y D
Sbjct: 127 FTFGSSQNKLAIG-YFDRKNNWFPVTDCLIADKSLVEVAHYVTEILDAFKLKAYFND--A 183
Query: 166 GDLRY--VQMAVTT 177
G LR+ V+ + TT
Sbjct: 184 GVLRHLVVRKSSTT 197
>UNIPROTKB|F1PQ26 [details] [associations]
symbol:TRMT2A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008173 "RNA methyltransferase activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR010280 InterPro:IPR012677 Pfam:PF05958 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510
GeneTree:ENSGT00530000063723 OMA:YFHPQKL EMBL:AAEX03014849
Ensembl:ENSCAFT00000022517 Uniprot:F1PQ26
Length = 626
Score = 134 (52.2 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 41/145 (28%), Positives = 77/145 (53%)
Query: 254 HLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPY--GASVTDLYAGAGV 311
H+ G+ E++ G+ ++P +F Q NT A ++L +Q + G++V D+ G G
Sbjct: 386 HVAGDRCIHEDLLGLTFRISPHAFFQVNTLAAEVLYTVIQDWAQLDTGSTVLDVCCGTGT 445
Query: 312 IGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWH--NADNSIEPLSWLV 369
IGL+LA + + V +E+ +E+ + V+ + N+ +H A++ + L +
Sbjct: 446 IGLALAP--RVKRVVGIELCQEAVE--DARVNARDNELS-NVEFHCGRAEDLVPALVSRL 500
Query: 370 GSDVLV--VDPPRKGLDSSLVHALQ 392
S LV +DPPR GL S ++ A++
Sbjct: 501 ASQQLVAILDPPRAGLHSKVILAVR 525
>ZFIN|ZDB-GENE-030131-6876 [details] [associations]
symbol:trmt2a "trm2 tRNA methyltransferase 2
homolog A (S. cerevisiae)" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008173 "RNA
methyltransferase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0016740
"transferase activity" evidence=IEA] [GO:0032259 "methylation"
evidence=IEA] [GO:0008168 "methyltransferase activity"
evidence=IEA] InterPro:IPR000504 InterPro:IPR010280
InterPro:IPR012677 Pfam:PF00076 Pfam:PF05958 PROSITE:PS01230
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6876
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006396
GO:GO:0008173 KO:K15332 GO:GO:0001510 CTD:27037 HOVERGEN:HBG052043
EMBL:BC045367 IPI:IPI00639711 RefSeq:NP_956223.1 UniGene:Dr.75151
ProteinModelPortal:Q7ZVY1 GeneID:334936 KEGG:dre:334936
InParanoid:Q7ZVY1 NextBio:20810602 ArrayExpress:Q7ZVY1
Uniprot:Q7ZVY1
Length = 619
Score = 133 (51.9 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 42/145 (28%), Positives = 75/145 (51%)
Query: 254 HLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKY--VPYGASVTDLYAGAGV 311
H+ GE E + G+ ++P SF Q NT A +IL + ++ + ++V D+ G G
Sbjct: 408 HVTGEEWIHEELLGLKFRISPHSFFQTNTPAAEILYSAVGEWAQLDQDSTVLDVCCGTGT 467
Query: 312 IGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWH-NADNSIEP--LSWL 368
IG+SLA ++ + V +E+ +E+ E + N+ +H + P L+ +
Sbjct: 468 IGISLA--KRVKKVIGIELCQEAVKDAEANAKANGLT---NVEFHCGKAEDVFPTILNAV 522
Query: 369 VGSDVL-VVDPPRKGLDSSLVHALQ 392
V +V +VDPPR GL S ++ A++
Sbjct: 523 VSPNVTAIVDPPRAGLHSKVILAIR 547
>FB|FBgn0036838 [details] [associations]
symbol:CG3808 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008173 "RNA methyltransferase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR010280 InterPro:IPR012677 Pfam:PF05958 PROSITE:PS01230
PROSITE:PS01231 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006396 GO:GO:0008173
GO:GO:0001510 EMBL:AY061614 ProteinModelPortal:Q95R49 SMR:Q95R49
PRIDE:Q95R49 FlyBase:FBgn0036838 InParanoid:Q95R49
OrthoDB:EOG470RZC ArrayExpress:Q95R49 Bgee:Q95R49 Uniprot:Q95R49
Length = 615
Score = 130 (50.8 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 65/288 (22%), Positives = 118/288 (40%)
Query: 117 IGLYQEGTHNVVDIPHCKAHHP-RINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAV 175
+G Y +G+ V ++ H P + A + +++ P++ D G R + +
Sbjct: 244 LGCYSDGSVEVAEVADLP-HLPEQAKWAARSFQDLVRKSKFLPFNPDGNIGHFRQLMVRC 302
Query: 176 TTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSV 235
++ L + + S +E+ +L+S E L ++ + Y V
Sbjct: 303 SSATGELMLVAGIYSSNL-------SEDEQVELKQELKSFYEDLAKDAPYKCSSLYYQDV 355
Query: 236 WANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRK-LQK 294
T N + H+ G T + + G+ ++P +F Q NT ++L +K +
Sbjct: 356 KHREAGQTINPV-----EHISGSTHITDTIQGLQFRISPLAFFQINTEGANVLYQKAIDL 410
Query: 295 YVPY-GASVTDLYAGAGVIGLSLAAARKCRSVKCVEIN----KESQLSFEKTVSRLPKSV 349
P ++ D+ G G I +LA A+ C+ V VEI K+++ + E + K
Sbjct: 411 VAPTKDTTMLDICCGTGTI--TLAFAKHCKKVMGVEIVPDAIKDAEFNAEANGIKNAKFF 468
Query: 350 DGNISWHNADNSIEPL-SWLVGS--DVL-VVDPPRKGLDSSLVHALQS 393
GN E L G D++ VVDPPR GL + A++S
Sbjct: 469 TGNADDFIKSMVREALYDQEPGKPLDLIAVVDPPRAGLHHRSIAAIRS 516
>TIGR_CMR|DET_1065 [details] [associations]
symbol:DET_1065 "RNA methyltransferase, TrmA family"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0008173 "RNA methyltransferase
activity" evidence=ISS] InterPro:IPR010280 Pfam:PF05958
PROSITE:PS01230 PROSITE:PS01231 GO:GO:0006396 EMBL:CP000027
GenomeReviews:CP000027_GR Gene3D:2.40.50.140 InterPro:IPR012340
eggNOG:COG2265 HOGENOM:HOG000029870 GO:GO:0008173 GO:GO:0001510
KO:K00599 RefSeq:YP_181780.1 ProteinModelPortal:Q3Z7L9
STRING:Q3Z7L9 GeneID:3229662 KEGG:det:DET1065 PATRIC:21609175
OMA:CANSRIV ProtClustDB:CLSK837125
BioCyc:DETH243164:GJNF-1066-MONOMER Uniprot:Q3Z7L9
Length = 395
Score = 85 (35.0 bits), Expect = 9.7e-05, Sum P(3) = 9.7e-05
Identities = 33/138 (23%), Positives = 65/138 (47%)
Query: 257 GETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPY--GASVTDLYAGAGVIGL 314
G+ ++ + + G D ++ +SF Q N + + ++K++ G ++ D YAG G +
Sbjct: 207 GQKEYHDLLLGHDFCISAASFFQVNNPQAEKMAGLIKKHLNLSGGETLVDAYAGVGTFAV 266
Query: 315 SLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS-DV 373
L+ C V +E ES + + +RL + NI + + +S G D
Sbjct: 267 LLSP--DCNRVIAIE---ESAAAIKD--ARLNIAGIDNIELIQSKTE-DVISQFQGQMDA 318
Query: 374 LVVDPPRKGLDSSLVHAL 391
L++DP R G S++ ++
Sbjct: 319 LILDPSRSGAHPSVLASI 336
Score = 82 (33.9 bits), Expect = 9.7e-05, Sum P(3) = 9.7e-05
Identities = 29/107 (27%), Positives = 46/107 (42%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVDEATDFFKSIGLLDFTF-----DSCRLYGWR 101
CP+F C+GCT H+ L II+ E F+ GL D T+ S YG+R
Sbjct: 74 CPYFGDCTGCTFQHISYPHQLKLKHQIILAE----FEKAGL-DSTYISEVIPSAAEYGYR 128
Query: 102 CRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLR 148
A+ ++ +G + V + HC+ + IN + L+
Sbjct: 129 NHARFSIYHAK----LGFVNRFSRRHVQVDHCRIMNSGINKVLAELQ 171
Score = 38 (18.4 bits), Expect = 9.7e-05, Sum P(3) = 9.7e-05
Identities = 5/12 (41%), Positives = 10/12 (83%)
Query: 439 QSLPQTLIYISC 450
Q+ P+ L+Y++C
Sbjct: 338 QNPPRNLVYVAC 349
>UNIPROTKB|O58864 [details] [associations]
symbol:PH1137 "tRNA (uracil(54)-C(5))-methyltransferase"
species:70601 "Pyrococcus horikoshii OT3" [GO:0030488 "tRNA
methylation" evidence=ISS] [GO:0030697
"S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase
activity" evidence=ISS] InterPro:IPR001566 InterPro:IPR010280
Pfam:PF05958 PROSITE:PS01230 PROSITE:PS01231 GO:GO:0046872
GO:GO:0051539 GO:GO:0003723 EMBL:BA000001 GenomeReviews:BA000001_GR
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG2265
HOGENOM:HOG000029870 ProtClustDB:CLSK253194 TIGRFAMs:TIGR00479
GO:GO:0030697 PIR:C71055 RefSeq:NP_143040.1
ProteinModelPortal:O58864 SMR:O58864
EnsemblBacteria:EBPYRT00000000785 GeneID:1443456 KEGG:pho:PH1137
OMA:LNGLNNC BioCyc:PHOR70601:GJWR-1127-MONOMER Uniprot:O58864
Length = 407
Score = 115 (45.5 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 71/300 (23%), Positives = 122/300 (40%)
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+L +G L+G+ E V+ P H RI+ AV + +GI + E +
Sbjct: 80 QLEFKGERIRRLLGVDVE----VIPSPRIFGHRNRIDLAVTV--EGIG------FRERGK 127
Query: 165 TGDLRYVQMAVTTYNTSLPASERYRNGKVQITL-VWNSRNEKS------PNSDKL--ESL 215
+ +Q TS A ER R + + VWN + ++ K E +
Sbjct: 128 WWKIVDIQECPVFGKTSRKAIERLREFIEEERISVWNVKKDEGFLRYMVLREGKFTGEVM 187
Query: 216 AEFLWRNGGSRSREHYIH---SVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISL 272
+ + G Y S++ + + ++V +G + G E + + +
Sbjct: 188 VNLVTKEGKLPDPSKYFDFATSIYWSVNRTKSDVSYGEV-ESVWGREFITEKLDDVIYLI 246
Query: 273 APSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
P+SF Q N+ L++K+ + V G V D+Y+G G G+ LA R K V +
Sbjct: 247 HPNSFFQTNSYQAVNLVKKVSELVE-GERVLDMYSGVGTFGIYLAK----RGFKVVGFDS 301
Query: 333 -ESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHAL 391
E + + +++ K VD D +E + G D ++VDPPR GL L+ L
Sbjct: 302 NEFAIEMARKNAKINK-VDAVFDVAT-DREVE----VNGFDTVIVDPPRVGLHPKLIKKL 355
Score = 46 (21.3 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 438 NQSLPQTLIYISCGWESF 455
N+ P+ ++Y+SC ++F
Sbjct: 356 NREKPEVIVYVSCNPKTF 373
>POMBASE|SPAC4G8.07c [details] [associations]
symbol:SPAC4G8.07c "tRNA (m5U54) methyltransferase Trm2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005634
"nucleus" evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0030488 "tRNA methylation" evidence=ISS] [GO:0030696 "tRNA
(m5U54) methyltransferase activity" evidence=ISS] [GO:0030697
"S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR010280 InterPro:IPR025795 Pfam:PF05958
PROSITE:PS01230 PROSITE:PS01231 PomBase:SPAC4G8.07c GO:GO:0005739
GO:GO:0005634 EMBL:CU329670 GO:GO:0046872 GO:GO:0051539
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG2265 GO:GO:0030697 InterPro:IPR002792 PROSITE:PS50926
Pfam:PF01938 OMA:HNGAGIA KO:K15331 HOGENOM:HOG000029869
OrthoDB:EOG4HHS9R GO:GO:0030696 PIR:T38852 RefSeq:NP_593067.1
ProteinModelPortal:Q09833 STRING:Q09833 EnsemblFungi:SPAC4G8.07c.1
GeneID:2543535 KEGG:spo:SPAC4G8.07c NextBio:20804544 Uniprot:Q09833
Length = 527
Score = 85 (35.0 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 37/142 (26%), Positives = 57/142 (40%)
Query: 263 ENVGGIDISLAPSSFGQANTRAFDILLRKLQKYV------PYGAS-------VTDLYAGA 309
E G + + +F Q N +L K YV P+G D Y G+
Sbjct: 331 EQFGDLSFTFPAGAFFQNNNS----ILEKFTSYVREQLLNPFGRKEHQRPKYFVDAYCGS 386
Query: 310 GVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLV 369
G+ S+A ++ SV VEI+ +S E+ R S + A+ +
Sbjct: 387 GLF--SVACSKGFLSVIGVEISADSVRYAEENAKRNNVS-NATFIVGQAEKIFSSIETPP 443
Query: 370 GSDVLVVDPPRKGLDSSLVHAL 391
+V+DPPRKG D S ++ L
Sbjct: 444 NETAMVIDPPRKGCDQSFLNQL 465
Score = 79 (32.9 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 27/105 (25%), Positives = 46/105 (43%)
Query: 52 LQCPHFQSCSGCTHEFN------LHRPIIVDEATDFFKSI--GLLDF---TFDSCRLYGW 100
++CP+F C GC ++ L + +V++A ++ + LL T S Y +
Sbjct: 180 IKCPYFAKCGGCQYQMLSYDKQLLQKKRVVEKAFQYYSKLDSSLLPAIKDTVGSPLQYNY 239
Query: 101 RCRAKL---AVRGTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRIN 141
R + +G + PLI G ++G V+DI C IN
Sbjct: 240 RTKITPHFDVPKGGTKGPLIIGFQEKGRRRVMDIEECPIATKTIN 284
>TIGR_CMR|GSU_1748 [details] [associations]
symbol:GSU_1748 "RNA methyltransferase, TrmA family"
species:243231 "Geobacter sulfurreducens PCA" [GO:0001510 "RNA
methylation" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] [GO:0008175 "tRNA methyltransferase activity"
evidence=ISS] InterPro:IPR001566 InterPro:IPR010280 Pfam:PF05958
PROSITE:PS01230 PROSITE:PS01231 GO:GO:0046872 GO:GO:0051539
GO:GO:0003723 GO:GO:0006396 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG2265 TIGRFAMs:TIGR00479 GO:GO:0008173 GO:GO:0001510
InterPro:IPR002792 PROSITE:PS50926 Pfam:PF01938 KO:K03215
HOGENOM:HOG000029868 RefSeq:NP_952798.1 ProteinModelPortal:Q74CC6
GeneID:2687018 KEGG:gsu:GSU1748 PATRIC:22026343 OMA:DIHQARI
ProtClustDB:CLSK828524 BioCyc:GSUL243231:GH27-1717-MONOMER
Uniprot:Q74CC6
Length = 438
Score = 103 (41.3 bits), Expect = 0.00056, Sum P(3) = 0.00056
Identities = 39/136 (28%), Positives = 60/136 (44%)
Query: 54 CPHFQSCSGCT--H-----EFNLHRPIIVDEATDF--FKSIGLLDFTFDSCRLYGWRCRA 104
CP F C GC+ H + I VD F + + F +G+RCRA
Sbjct: 68 CPVFGICGGCSWQHLRYDAQAEAKERIFVDTLWRFGRVERDAVAPFAVAD-NPFGYRCRA 126
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIP-HCKAHHPRINAAVELLRQGIKELNVEPYDE-- 161
+ +R + +G Y+ G+H V+D P C P IN + LR + + + EP D+
Sbjct: 127 QFKIRWSGGRLHMGFYRRGSHYVIDAPAECVICDPAINLTLRDLRLVLPDFS-EP-DKIP 184
Query: 162 --DDRTGDLRYVQMAV 175
D TG+ +V + V
Sbjct: 185 QIDAATGEDGHVLLVV 200
Score = 53 (23.7 bits), Expect = 0.00056, Sum P(3) = 0.00056
Identities = 17/53 (32%), Positives = 23/53 (43%)
Query: 268 IDISLAPSSFGQANTRAFDILLRKLQKY--VPYGASVTDLYAGAGVIGLSLAA 318
+ +S F Q N R +L+ K V G V DL+ G G L LA+
Sbjct: 260 LSLSFRRGGFSQVNYRQNRVLVSKALHLAGVGPGRRVLDLFCGNGNFSLPLAS 312
Score = 41 (19.5 bits), Expect = 0.00056, Sum P(3) = 0.00056
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 372 DVLVVDPPRKG 382
D +++DPPR G
Sbjct: 364 DTVILDPPRTG 374
>UNIPROTKB|F2Z2W7 [details] [associations]
symbol:TRMT2A "tRNA (uracil-5-)-methyltransferase homolog
A" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025714
Pfam:PF13847 EMBL:AC006547 HGNC:HGNC:24974 ChiTaRS:TRMT2A
IPI:IPI00878912 ProteinModelPortal:F2Z2W7 SMR:F2Z2W7 PRIDE:F2Z2W7
Ensembl:ENST00000439169 OMA:YFHPQKL ArrayExpress:F2Z2W7 Bgee:F2Z2W7
Uniprot:F2Z2W7
Length = 643
Score = 108 (43.1 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 50/206 (24%), Positives = 88/206 (42%)
Query: 117 IGLYQEGTHNVVDIPHCKAHHPRINA-AVELLRQGIKELNVEPYDEDDRTGDLRYVQMAV 175
+G Y+ GT V P H P V+ ++ I+ YD + TG + Q+ V
Sbjct: 262 LGKYKGGTCAVA-APFDTVHIPEATKQVVKAFQEFIRSTPYSAYDPETYTG--HWKQLTV 318
Query: 176 TTYNTSLPASERYRNGKVQITLVWNSRNEKSPN--SDKLESLAEFLWRNGGSRSREHYIH 233
T S R++ + + + + SP ++ SLA+ G S ++
Sbjct: 319 RT-------SRRHQ----AMAIAYFHPQKLSPEELAELKTSLAQHFTAGPGRASGVTCLY 367
Query: 234 SVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQ 293
V + + + G H+ G+ E++ G+ ++P +F Q NT A ++L +Q
Sbjct: 368 FVEEGQRKTPSQE--GLPLEHVAGDRCIHEDLLGLTFRISPHAFFQVNTPAAEVLYTVIQ 425
Query: 294 KYVPY--GASVTDLYAGAGVIGLSLA 317
+ G+ V D+ G G IGL+LA
Sbjct: 426 DWAQLDAGSMVLDVCCGTGTIGLALA 451
Score = 56 (24.8 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 352 NISWH--NADNSIEPLSWLVGSD--VLVVDPPRKGLDSSLVHALQ 392
N+ +H A++ + L + S V ++DPPR GL S ++ A++
Sbjct: 499 NVEFHCGRAEDLVPTLVSRLASQHLVAILDPPRAGLHSKVILAIR 543
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.134 0.417 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 457 414 0.00081 118 3 11 22 0.39 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 29
No. of states in DFA: 620 (66 KB)
Total size of DFA: 294 KB (2152 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 32.98u 0.09s 33.07t Elapsed: 00:00:04
Total cpu time: 32.99u 0.09s 33.08t Elapsed: 00:00:04
Start: Fri May 10 00:16:47 2013 End: Fri May 10 00:16:51 2013