BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044572
(457 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255536931|ref|XP_002509532.1| conserved hypothetical protein [Ricinus communis]
gi|223549431|gb|EEF50919.1| conserved hypothetical protein [Ricinus communis]
Length = 518
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/462 (75%), Positives = 394/462 (85%), Gaps = 5/462 (1%)
Query: 1 MPPCLLSARPPSPVITCRVSLGAVRN--PPPPAPPSSLPLDPPAANLPSLTCALQCPHFQ 58
MPP LLS RP SP++TC S R+ PPPP PP D +P+LTC LQCPHFQ
Sbjct: 1 MPPFLLSFRPLSPLVTCHASTTVHRSLQPPPPKPPPLPLADLSTITVPTLTCVLQCPHFQ 60
Query: 59 SCSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIG 118
SCSGCT EFNLHRP+IV+EA+DFFK++G+ DFTFDS RL+GWRCRAKLAVRG+S PLIG
Sbjct: 61 SCSGCTQEFNLHRPLIVNEASDFFKNLGISDFTFDSSRLWGWRCRAKLAVRGSSMQPLIG 120
Query: 119 LYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTY 178
LYQEGTHNVVDIPHCKAHHP INAAVELLRQGI ELN+EPYDED TGDLRYVQMAVTTY
Sbjct: 121 LYQEGTHNVVDIPHCKAHHPSINAAVELLRQGITELNIEPYDEDQGTGDLRYVQMAVTTY 180
Query: 179 NTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWAN 238
NTSLPASERY++G VQ+ LVWNSRNE SPN DKL +LA +LWRNGG R+ +IHS+WAN
Sbjct: 181 NTSLPASERYKHGIVQVALVWNSRNENSPNFDKLNALANYLWRNGGPRTAVRFIHSIWAN 240
Query: 239 FQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPY 298
FQTSTNN+IFGNRWRHLLG+ DFWE VGGID+SLAPSSFGQANTRAFD LLRKLQKYVP
Sbjct: 241 FQTSTNNIIFGNRWRHLLGDQDFWERVGGIDMSLAPSSFGQANTRAFDALLRKLQKYVPL 300
Query: 299 GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNA 358
GASV DLYAGAGVIGLSLAA+RKCRSVKC+E+NK+S++SFEK RLPKSVD +ISW+ A
Sbjct: 301 GASVADLYAGAGVIGLSLAASRKCRSVKCIEVNKQSKISFEKAAERLPKSVDSSISWYQA 360
Query: 359 DNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKS--LSESSSSMVKEEK 416
D S+EPLSWL+GS+V++VDPPRKGLD+SLV AL +I S ERK KS S +S VK+EK
Sbjct: 361 DTSVEPLSWLMGSEVVIVDPPRKGLDASLVDALLTISSLERKPKSSPASFGHNSKVKDEK 420
Query: 417 RPWILRAKEASVQIGSKTNSEN-QSLPQTLIYISCGWESFKE 457
RPWILRA+EASV+IGSKT E+ QSLPQTLIYISCGWESFKE
Sbjct: 421 RPWILRAREASVEIGSKTTLEDPQSLPQTLIYISCGWESFKE 462
>gi|225451414|ref|XP_002273563.1| PREDICTED: uncharacterized RNA methyltransferase pc1998 [Vitis
vinifera]
gi|296082357|emb|CBI21362.3| unnamed protein product [Vitis vinifera]
Length = 497
Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/458 (74%), Positives = 385/458 (84%), Gaps = 17/458 (3%)
Query: 1 MPPCLLSARPPSPVITCRVSLGAVRNPPPPAPPSSLPLDPPAANLPSLTCALQCPHFQSC 60
M +LSA+P +P + PP+P +L L P LPSLTCALQC HFQSC
Sbjct: 1 MTLSILSAQPSAPQLPASF---------PPSP--NLSLSP----LPSLTCALQCQHFQSC 45
Query: 61 SGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLY 120
SGCT E NLHRPII+D+ TDFF + G+ DFTFDSCRL+GWRCRAKLAVRG+S SPLIGLY
Sbjct: 46 SGCTQELNLHRPIILDDVTDFFNNHGVSDFTFDSCRLWGWRCRAKLAVRGSSNSPLIGLY 105
Query: 121 QEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNT 180
QE +HN+VDIPHCKAHHP INA VELL+QGI L VEPYDED TG+LRYVQMAVT NT
Sbjct: 106 QENSHNIVDIPHCKAHHPSINATVELLKQGITHLKVEPYDEDQGTGELRYVQMAVTLNNT 165
Query: 181 SLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQ 240
SLPAS+RYRNGKVQ+TLVWNSRNE SP+S+KL++LA FLWRNGG RS H IHSVWANFQ
Sbjct: 166 SLPASQRYRNGKVQVTLVWNSRNENSPSSEKLKALANFLWRNGGPRSNVHLIHSVWANFQ 225
Query: 241 TSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGA 300
TSTNN+IFGNRWRHLLGE DFWE+VGGIDI+LAPSSFGQANTRAFD LLRKLQKYVPYGA
Sbjct: 226 TSTNNIIFGNRWRHLLGEIDFWEHVGGIDIALAPSSFGQANTRAFDSLLRKLQKYVPYGA 285
Query: 301 SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADN 360
+V DLYAGAGVIGLSLAA RKCRSVKC+EINKE++LSFEKTV RLPKS+D ISWH+AD
Sbjct: 286 AVADLYAGAGVIGLSLAATRKCRSVKCIEINKEARLSFEKTVGRLPKSIDTTISWHHADT 345
Query: 361 SIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWI 420
SI PLSWL+GSDV+VVDPPRKGLD SLV AL+++ AE++A L+E S S VK EKRPWI
Sbjct: 346 SIGPLSWLMGSDVVVVDPPRKGLDPSLVDALRTLSLAEKRAM-LTERSFSKVKNEKRPWI 404
Query: 421 LRAKEASVQIGSKTN-SENQSLPQTLIYISCGWESFKE 457
LRA+EASVQI SKT+ E QSLP+TLIYISCGWESFKE
Sbjct: 405 LRAREASVQIESKTSPEEGQSLPKTLIYISCGWESFKE 442
>gi|449455868|ref|XP_004145672.1| PREDICTED: uncharacterized RNA methyltransferase pc1998-like
[Cucumis sativus]
Length = 519
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/464 (72%), Positives = 389/464 (83%), Gaps = 7/464 (1%)
Query: 1 MPPCLLSARPPSPVITCRVSLGAVR--NPPPPAPPSSLPLDPPAANLP----SLTCALQC 54
M C + RP +P +TC++S ++R +P P P L A ++P S C+LQC
Sbjct: 1 MLHCHFTPRPITPFVTCQLSTSSLRIPSPSQPTPLPPPLLSLAAKSIPDSVSSPACSLQC 60
Query: 55 PHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTS 114
HFQSCSGCTHEF+LHRP+IV+EAT FF +G+LDFTFDSC+L+GWRCRAKLAVRG+S S
Sbjct: 61 THFQSCSGCTHEFDLHRPVIVEEATQFFNDLGVLDFTFDSCKLWGWRCRAKLAVRGSSIS 120
Query: 115 PLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMA 174
P+IGLYQEGTHNVVDIP CKAHHP INAAVELL++GI E ++EPYDED TGDLRYVQ+A
Sbjct: 121 PMIGLYQEGTHNVVDIPDCKAHHPNINAAVELLKRGITEFDIEPYDEDQGTGDLRYVQLA 180
Query: 175 VTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHS 234
VTTY+TSLP+SERY+NGK+QI LVWNSRNE S NSDKL +LA FLW+NGG RS H +HS
Sbjct: 181 VTTYSTSLPSSERYKNGKIQIALVWNSRNETSQNSDKLNALANFLWKNGGVRSNTHLVHS 240
Query: 235 VWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQK 294
VWANFQTSTNNVIFGNRWRHLLGE DFWE+VGGIDI L PSSFGQANT+AFD LLRKLQK
Sbjct: 241 VWANFQTSTNNVIFGNRWRHLLGERDFWEHVGGIDICLTPSSFGQANTQAFDSLLRKLQK 300
Query: 295 YVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNIS 354
YVPYGASV DLYAGAGVIGLSLAA RKCRSVKCVE+NKES+LSFEKTV RLP V+ +IS
Sbjct: 301 YVPYGASVADLYAGAGVIGLSLAATRKCRSVKCVEVNKESKLSFEKTVERLPDRVNSSIS 360
Query: 355 WHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKE 414
WH+AD S EPLSW++GSDV+VVDPPRKGLD+SL + L+ I S +RK K LS+ ++K+
Sbjct: 361 WHHADTSKEPLSWIMGSDVVVVDPPRKGLDASLANMLRDISSFKRKVKLLSKRLDLLLKD 420
Query: 415 EKRPWILRAKEASVQIGSKTNSE-NQSLPQTLIYISCGWESFKE 457
EKRPW+LRA+E +VQIGS T+SE NQSLPQTLIYISCGWESFKE
Sbjct: 421 EKRPWVLRAREETVQIGSTTDSEPNQSLPQTLIYISCGWESFKE 464
>gi|356560491|ref|XP_003548525.1| PREDICTED: uncharacterized RNA methyltransferase pc1998-like
[Glycine max]
Length = 515
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/425 (75%), Positives = 369/425 (86%), Gaps = 7/425 (1%)
Query: 34 SSLPLDPPAANLPSLTCALQCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFD 93
SS+P PP LTCAL CPHFQSCSGCTHEFNLHRP+I+D+AT+FF+ G+ DFTFD
Sbjct: 40 SSIPQSPP------LTCALHCPHFQSCSGCTHEFNLHRPVILDDATNFFRKHGVSDFTFD 93
Query: 94 SCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKE 153
+C+L+GWRCRAKLAVRG+ST PLIGLY+EGTHNVVDIP C+AHHP INAAVELLR+GI E
Sbjct: 94 TCKLWGWRCRAKLAVRGSSTEPLIGLYEEGTHNVVDIPQCQAHHPNINAAVELLRRGIIE 153
Query: 154 LNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLE 213
+ VEPY ED+ TGDLRYVQMAVTTYNTSLPA++RY+NGKVQ+TLVWNSRNE SP SDKL
Sbjct: 154 IGVEPYIEDEGTGDLRYVQMAVTTYNTSLPAAQRYKNGKVQVTLVWNSRNENSPGSDKLN 213
Query: 214 SLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLA 273
+LA FLW+NGG RSR H IHSVWANFQTSTNN+IFGN+WRHLLGE DFWE+VGGID+SLA
Sbjct: 214 ALANFLWKNGGQRSRLHLIHSVWANFQTSTNNIIFGNKWRHLLGERDFWEHVGGIDVSLA 273
Query: 274 PSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
PSSFGQANTRAFD LLR+LQKYVPY + V DLYAGAGVIGLSLAA RKCRS+KC+EINKE
Sbjct: 274 PSSFGQANTRAFDALLRRLQKYVPYESDVADLYAGAGVIGLSLAATRKCRSIKCIEINKE 333
Query: 334 SQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQS 393
S+ SFEKT+ RLP +VD +I+WH+AD S EP WL+GSDV+V+DPPRKGLD+SL+ AL++
Sbjct: 334 SKASFEKTIERLPATVDSSITWHHADASKEPFLWLLGSDVVVIDPPRKGLDASLIDALKN 393
Query: 394 IGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQIGSKTNSE-NQSLPQTLIYISCGW 452
I S ERKA S S S+ +EEKRPW+LRAKE SVQIGSK + QS+PQTLIYISCGW
Sbjct: 394 ISSVERKAFSSSGRFSNSSQEEKRPWVLRAKEDSVQIGSKPPTNIAQSVPQTLIYISCGW 453
Query: 453 ESFKE 457
ESFKE
Sbjct: 454 ESFKE 458
>gi|42565237|ref|NP_189354.2| S-adenosylmethionine-dependent methyltransferase-domain containing
protein [Arabidopsis thaliana]
gi|190341123|gb|ACE74720.1| At3g27180 [Arabidopsis thaliana]
gi|332643755|gb|AEE77276.1| S-adenosylmethionine-dependent methyltransferase-domain containing
protein [Arabidopsis thaliana]
Length = 518
Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/447 (70%), Positives = 376/447 (84%), Gaps = 9/447 (2%)
Query: 13 PVITCRVSLGAVRNPPPPAP-PSSLPLDPPAANLPSLTCALQCPHFQSCSGCTHEFNLHR 71
P+I CRVS P AP +S+PL PP+ + SL C+LQCPHFQSCSGCT EFNLHR
Sbjct: 15 PIINCRVS------APASAPFVASVPL-PPSTSSDSLACSLQCPHFQSCSGCTQEFNLHR 67
Query: 72 PIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIP 131
P +VDEA+DFFK G+ DFTFDSCRL+GWRCRAKLAVRG+S + LIGLYQEGTH VVDIP
Sbjct: 68 PAVVDEASDFFKRYGVDDFTFDSCRLWGWRCRAKLAVRGSSDNALIGLYQEGTHTVVDIP 127
Query: 132 HCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNG 191
CK+HHP INAA+ELLR+GIK +V P+DED TGDLRYVQMAVTT++T+L A ERY+NG
Sbjct: 128 ECKSHHPNINAAIELLREGIKVFDVVPFDEDQGTGDLRYVQMAVTTHSTNLRAPERYKNG 187
Query: 192 KVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNR 251
KVQ++LVWNSRNE+S N+DKL++L+ +LWR GG S+ H IHSVWANFQTSTNN+IFGNR
Sbjct: 188 KVQVSLVWNSRNERSHNADKLQALSTYLWRKGGPNSKFHLIHSVWANFQTSTNNIIFGNR 247
Query: 252 WRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGV 311
WRHLLGE DFWE+VGGIDISL PSSFGQANTRAFD LL KL KYVP G+SV DLYAGAGV
Sbjct: 248 WRHLLGERDFWEHVGGIDISLDPSSFGQANTRAFDSLLWKLHKYVPGGSSVADLYAGAGV 307
Query: 312 IGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS 371
IGLSLA +RKC SVKC+E+NKE++LSFEKT+ RLP S++ +ISWH+AD S+ PLSW++GS
Sbjct: 308 IGLSLATSRKCSSVKCIEVNKEARLSFEKTIQRLPNSLNCSISWHHADASVNPLSWIIGS 367
Query: 372 DVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQIG 431
DV+VVDPPR+GLD+SL L+S+ S E++ +S S+SSS KEEKRPWILRAKE S+Q G
Sbjct: 368 DVVVVDPPRRGLDASLRQMLESVPSIEKRMRSSSQSSSLNAKEEKRPWILRAKELSIQAG 427
Query: 432 SK-TNSENQSLPQTLIYISCGWESFKE 457
+K T+ EN +LPQ LIYISCGWESFKE
Sbjct: 428 NKQTSEENNTLPQRLIYISCGWESFKE 454
>gi|147845832|emb|CAN82187.1| hypothetical protein VITISV_031112 [Vitis vinifera]
Length = 480
Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/404 (78%), Positives = 351/404 (86%), Gaps = 7/404 (1%)
Query: 60 CSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGL 119
CSGCT E NLHRPII+D+ TDFF + G+ DFTFDSCRL+GWRCRAKLAVRG+S SPLIGL
Sbjct: 5 CSGCTQELNLHRPIILDDVTDFFNNHGVSDFTFDSCRLWGWRCRAKLAVRGSSNSPLIGL 64
Query: 120 YQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYN 179
YQE +HN+VDIPHCKAHHP INA VELL+QGI L VEPYDED TG+LRYVQMAVT N
Sbjct: 65 YQENSHNIVDIPHCKAHHPSINATVELLKQGITHLKVEPYDEDQGTGELRYVQMAVTXNN 124
Query: 180 TSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANF 239
TSLPAS+RYRNGKVQ+TLVWNSRNE SP+S+KL++LA FLWRNGG RS H IHSVWANF
Sbjct: 125 TSLPASQRYRNGKVQVTLVWNSRNENSPSSEKLKALANFLWRNGGPRSNVHLIHSVWANF 184
Query: 240 QTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYG 299
QTSTNN+IFGNRWRHLLGE DFWE+VGGIDI+LAPSSFGQANTRAFD LLRKLQKYVPYG
Sbjct: 185 QTSTNNIIFGNRWRHLLGEIDFWEHVGGIDIALAPSSFGQANTRAFDSLLRKLQKYVPYG 244
Query: 300 ASVTDLYAGAGVIGLSLAAARKCR-----SVKCVEINKESQLSFEKTVSRLPKSVDGNIS 354
A+V DLYAGAGVIGLSLAA RKCR SVKC+EINKE++LSFEKTV RLPKS+D IS
Sbjct: 245 AAVADLYAGAGVIGLSLAATRKCRQELRWSVKCIEINKEARLSFEKTVGRLPKSIDXTIS 304
Query: 355 WHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKE 414
WH+AD SI PLSWL GSDV+VVDPPRKGLD SLV AL+++ AE++A L+E S S VK
Sbjct: 305 WHHADTSIGPLSWLXGSDVVVVDPPRKGLDPSLVDALRTLSLAEKRAM-LTERSFSKVKN 363
Query: 415 EKRPWILRAKEASVQIGSKTN-SENQSLPQTLIYISCGWESFKE 457
EKRPWILRA EASVQI SKT+ E QSLP+TLIYISCGWESFKE
Sbjct: 364 EKRPWILRAXEASVQIESKTSPEEGQSLPKTLIYISCGWESFKE 407
>gi|297818278|ref|XP_002877022.1| hypothetical protein ARALYDRAFT_904929 [Arabidopsis lyrata subsp.
lyrata]
gi|297322860|gb|EFH53281.1| hypothetical protein ARALYDRAFT_904929 [Arabidopsis lyrata subsp.
lyrata]
Length = 512
Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/448 (70%), Positives = 375/448 (83%), Gaps = 11/448 (2%)
Query: 13 PVITCRVSLGAVRNPPPPAPPS--SLPLDPPAANLPSLTCALQCPHFQSCSGCTHEFNLH 70
P+ITCRVS PP+ P+ + PP+++ SL C+LQCPHFQSCSGCT EFNLH
Sbjct: 14 PIITCRVS--------PPSSPTFVASVPLPPSSSSDSLACSLQCPHFQSCSGCTQEFNLH 65
Query: 71 RPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDI 130
RP +VDEA+ FFK G+ DFTFDSCRL+GWRCRAKLAVRG+S + LIGLYQEGTH VVDI
Sbjct: 66 RPAVVDEASGFFKRYGVEDFTFDSCRLWGWRCRAKLAVRGSSDNALIGLYQEGTHTVVDI 125
Query: 131 PHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRN 190
P CK+HHP INAA+ELLR+GIK +V P+DED TGDLRYVQMAVTT++T+L A ERY+N
Sbjct: 126 PECKSHHPNINAAIELLREGIKVFDVVPFDEDQGTGDLRYVQMAVTTHSTNLRAPERYKN 185
Query: 191 GKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGN 250
GKVQ++LVWNSRNE+S N+DKL++L+ +LWR GG S+ H IHSVWANFQTSTNN+IFGN
Sbjct: 186 GKVQVSLVWNSRNERSHNADKLQALSSYLWRKGGPNSKFHLIHSVWANFQTSTNNIIFGN 245
Query: 251 RWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAG 310
RWRHLLGE DFWE+VGGIDISL PSSFGQANTRAFD LL KL KYVP G+SV DLYAGAG
Sbjct: 246 RWRHLLGERDFWEHVGGIDISLDPSSFGQANTRAFDSLLWKLHKYVPGGSSVADLYAGAG 305
Query: 311 VIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVG 370
VIGLSLA +RKC SVKC+E+NKE++LSFEKT+ RLP SVD +ISWH+AD S+ PLSW++G
Sbjct: 306 VIGLSLATSRKCSSVKCIEVNKEARLSFEKTIQRLPNSVDCSISWHHADASVNPLSWIIG 365
Query: 371 SDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQI 430
SDV+VVDPPR+GLD+SL L+S+ S E++ +S S+SSS+ KEEKRPWILRAKE S+Q
Sbjct: 366 SDVVVVDPPRRGLDASLRQMLESVPSIEKRMRSSSQSSSTNAKEEKRPWILRAKELSIQA 425
Query: 431 GSK-TNSENQSLPQTLIYISCGWESFKE 457
G+K T EN +LPQ LIYISCGWESFKE
Sbjct: 426 GNKLTPEENNTLPQRLIYISCGWESFKE 453
>gi|9294083|dbj|BAB01935.1| unnamed protein product [Arabidopsis thaliana]
Length = 511
Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust.
Identities = 319/488 (65%), Positives = 377/488 (77%), Gaps = 50/488 (10%)
Query: 13 PVITCRVSLGAVRNPPPPAP-PSSLPLDPPAANLPSLTCALQCPHFQSCSGCTHEFNLHR 71
P+I CRVS P AP +S+PL PP+ + SL C+LQCPHFQSCSGCT EFNLHR
Sbjct: 14 PIINCRVS------APASAPFVASVPL-PPSTSSDSLACSLQCPHFQSCSGCTQEFNLHR 66
Query: 72 PIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIP 131
P +VDEA+DFFK G+ DFTFDSCRL+GWRCRAKLAVRG+S + LIGLYQEGTH VVDIP
Sbjct: 67 PAVVDEASDFFKRYGVDDFTFDSCRLWGWRCRAKLAVRGSSDNALIGLYQEGTHTVVDIP 126
Query: 132 HCK------AHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPAS 185
CK AHHP INAA+ELLR+GIK +V P+DED TGDLRYVQMAVTT++T+L A
Sbjct: 127 ECKCNFDCAAHHPNINAAIELLREGIKVFDVVPFDEDQGTGDLRYVQMAVTTHSTNLRAP 186
Query: 186 ERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNN 245
ERY+NGKVQ++LVWNSRNE+S N+DKL++L+ +LWR GG S+ H IHSVWANFQTSTNN
Sbjct: 187 ERYKNGKVQVSLVWNSRNERSHNADKLQALSTYLWRKGGPNSKFHLIHSVWANFQTSTNN 246
Query: 246 VIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDL 305
+IFGNRWRHLLGE DFWE+VGGIDISL PSSFGQANTRAFD LL KL KYVP G+SV DL
Sbjct: 247 IIFGNRWRHLLGERDFWEHVGGIDISLDPSSFGQANTRAFDSLLWKLHKYVPGGSSVADL 306
Query: 306 YAGAGVIGLSLAAARKCR-----------------------------------SVKCVEI 330
YAGAGVIGLSLA +RKCR SVKC+E+
Sbjct: 307 YAGAGVIGLSLATSRKCRQEQRLFTSVLNLKRLYMFILMKRLTQYFILKSDFSSVKCIEV 366
Query: 331 NKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHA 390
NKE++LSFEKT+ RLP S++ +ISWH+AD S+ PLSW++GSDV+VVDPPR+GLD+SL
Sbjct: 367 NKEARLSFEKTIQRLPNSLNCSISWHHADASVNPLSWIIGSDVVVVDPPRRGLDASLRQM 426
Query: 391 LQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQIGSK-TNSENQSLPQTLIYIS 449
L+S+ S E++ +S S+SSS KEEKRPWILRAKE S+Q G+K T+ EN +LPQ LIYIS
Sbjct: 427 LESVPSIEKRMRSSSQSSSLNAKEEKRPWILRAKELSIQAGNKQTSEENNTLPQRLIYIS 486
Query: 450 CGWESFKE 457
CGWESFKE
Sbjct: 487 CGWESFKE 494
>gi|449523365|ref|XP_004168694.1| PREDICTED: uncharacterized RNA methyltransferase pc1998-like,
partial [Cucumis sativus]
Length = 414
Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust.
Identities = 281/359 (78%), Positives = 317/359 (88%), Gaps = 1/359 (0%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
WRCRAKLAVRG+S SP+IGLYQEGTHNVVDIP CKAHHP INAAVELL++GI E ++EPY
Sbjct: 1 WRCRAKLAVRGSSISPMIGLYQEGTHNVVDIPDCKAHHPNINAAVELLKRGITEFDIEPY 60
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DED TGDLRYVQ+AVTTY+TSLP+SERY+NGK+QI LVWNSRNE S NSDKL +LA FL
Sbjct: 61 DEDQGTGDLRYVQLAVTTYSTSLPSSERYKNGKIQIALVWNSRNETSQNSDKLNALANFL 120
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
W+NGG RS H +HSVWANFQTSTNNVIFGNRWRHLLGE DFWE+VGGIDI L PSSFGQ
Sbjct: 121 WKNGGVRSNTHLVHSVWANFQTSTNNVIFGNRWRHLLGERDFWEHVGGIDICLTPSSFGQ 180
Query: 280 ANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
ANT+AFD LLRKLQKYVPYGASV DLYAGAGVIGLSLAA RKCRSVKCVE+NKES+LSFE
Sbjct: 181 ANTQAFDSLLRKLQKYVPYGASVADLYAGAGVIGLSLAATRKCRSVKCVEVNKESKLSFE 240
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAER 399
KTV RLP V+ +ISWH+AD S EPLSW++GSDV+VVDPPRKGLD+SL + L+ I S +R
Sbjct: 241 KTVERLPDRVNSSISWHHADTSKEPLSWIMGSDVVVVDPPRKGLDASLANMLRDISSFKR 300
Query: 400 KAKSLSESSSSMVKEEKRPWILRAKEASVQIGSKTNSE-NQSLPQTLIYISCGWESFKE 457
K K LS+ ++K+EKRPW+LRA+E +VQIGS T+SE NQSLPQTLIYISCGWESFKE
Sbjct: 301 KVKLLSKRLDLLLKDEKRPWVLRAREETVQIGSTTDSEPNQSLPQTLIYISCGWESFKE 359
>gi|357126538|ref|XP_003564944.1| PREDICTED: uncharacterized RNA methyltransferase pc1998-like
[Brachypodium distachyon]
Length = 540
Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust.
Identities = 276/434 (63%), Positives = 339/434 (78%), Gaps = 5/434 (1%)
Query: 27 PPPPAPPSSLPLDPPAANL--PSLTCALQCPHFQSCSGCTHEFNLHRPIIVDEATDFFKS 84
P P P +SLPL P + P+ TC L C HF SCSGCTHEF+L +P ++ E DFFK
Sbjct: 53 PTAPKPATSLPLPPTIVSTTDPASTC-LGCVHFGSCSGCTHEFDLDKPPVLQEVADFFKG 111
Query: 85 IGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAV 144
G+ DFTF RL WRCRAKLAVRGT PLIGLYQEGTHNV DIP C+AHHP INAA+
Sbjct: 112 HGVEDFTFSRGRLSEWRCRAKLAVRGTPERPLIGLYQEGTHNVQDIPECRAHHPSINAAI 171
Query: 145 ELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNE 204
+LL+QGI ELNV+P+DED TG+LRYVQM VTTYNTS+P ++RY +VQ++LVWNSR+E
Sbjct: 172 KLLKQGISELNVQPFDEDAGTGELRYVQMTVTTYNTSIPVAKRYGQARVQVSLVWNSRDE 231
Query: 205 KSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWEN 264
+S NS+KL L EFLWR GG RS H IHS+WANFQTST+N+IFG++WRHL+GE D WE
Sbjct: 232 RSKNSEKLSLLQEFLWRTGGPRSNMHVIHSIWANFQTSTSNIIFGHKWRHLVGEADLWER 291
Query: 265 VGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRS 324
GG+DISL P SFGQANT +F+ LL KL KYVP G++V DLY+GAGVIGLS+AA+RKCRS
Sbjct: 292 FGGVDISLDPYSFGQANTLSFNSLLHKLLKYVPRGSTVVDLYSGAGVIGLSIAASRKCRS 351
Query: 325 VKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLD 384
VKCVEINK S+LSFEK+ SRLP ++ I+WHN D S+EP+ WL GS V +VDPPRKGL
Sbjct: 352 VKCVEINKMSKLSFEKSASRLPTNLGCTITWHNTDASVEPVHWLEGSSVAIVDPPRKGLH 411
Query: 385 SSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQIGSKTNSENQ-SLPQ 443
S+++ALQ + +ERKA ++SS + VK+EKRPWILRA+EA+V + + E+ + P+
Sbjct: 412 PSVINALQRVALSERKAYK-AKSSLTKVKDEKRPWILRAREAAVHVDNTDMEESSGTWPE 470
Query: 444 TLIYISCGWESFKE 457
TLIYISCGWESFK+
Sbjct: 471 TLIYISCGWESFKK 484
>gi|226507434|ref|NP_001143384.1| uncharacterized protein LOC100276021 [Zea mays]
gi|195619410|gb|ACG31535.1| hypothetical protein [Zea mays]
Length = 547
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 258/406 (63%), Positives = 323/406 (79%), Gaps = 2/406 (0%)
Query: 52 LQCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGT 111
L C HF CSGCTHE +L +P ++ E +FFK G+ DFTF RL WRCRAKLAVRGT
Sbjct: 88 LDCVHFGKCSGCTHEVDLDKPPVLQEVANFFKGHGVGDFTFSRGRLSQWRCRAKLAVRGT 147
Query: 112 STSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYV 171
+PLIGLYQEGTH V+DIP C+AHHP INAAV+LLRQGI EL+++P+DED G+LRYV
Sbjct: 148 PENPLIGLYQEGTHAVIDIPECRAHHPSINAAVKLLRQGITELSIQPFDEDAGAGELRYV 207
Query: 172 QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHY 231
QMAVTTYNTS+P +RY GKVQ++LVWNSR+E+S N++KL S+ E+LW NGG +S H
Sbjct: 208 QMAVTTYNTSIPVDKRYEQGKVQVSLVWNSRDERSQNAEKLTSIIEYLWTNGGPKSSVHL 267
Query: 232 IHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRK 291
IHS+WANFQTST+N+IFG++WRHL GE D WE GG+DISL P SFGQANT +F+ LL K
Sbjct: 268 IHSIWANFQTSTSNIIFGHKWRHLKGERDMWERYGGVDISLDPCSFGQANTLSFNSLLHK 327
Query: 292 LQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDG 351
L KYVP ++V DLY+GAGVIGLS+AA+RKCRSVKC+EINK+S++SFE + SRLP ++
Sbjct: 328 LNKYVPRSSTVVDLYSGAGVIGLSVAASRKCRSVKCIEINKQSKMSFETSASRLPANLGC 387
Query: 352 NISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSM 411
I+WHN D S+EP WL GS V++VDPPRKGL S++ ALQ + +ERKA ++SS +
Sbjct: 388 TITWHNTDASVEPSHWLEGSSVVIVDPPRKGLHPSVISALQKVALSERKAYK-AKSSLAK 446
Query: 412 VKEEKRPWILRAKEASVQIGSKTNSE-NQSLPQTLIYISCGWESFK 456
VK+EKRPWILRA+EA+V + + T E N++ P+TLIYISCGWESFK
Sbjct: 447 VKDEKRPWILRAREAAVHVDNTTTEEGNETWPETLIYISCGWESFK 492
>gi|326534126|dbj|BAJ89413.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 551
Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust.
Identities = 264/431 (61%), Positives = 328/431 (76%), Gaps = 5/431 (1%)
Query: 30 PAPPSSLPLDPPAANL--PSLTCALQCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGL 87
P P +SLP P + PS TC L C HF SCSGCTHE +L +P ++ E DFF G+
Sbjct: 58 PKPAASLPPPPVIVSTMDPSSTC-LNCTHFGSCSGCTHELDLDKPPVLQEVADFFSGHGI 116
Query: 88 LDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELL 147
DFTF RL WRCRAKLAVRGT PLIGLYQEGTH V DIP C+AHHP IN A++LL
Sbjct: 117 EDFTFSRGRLSEWRCRAKLAVRGTPEKPLIGLYQEGTHTVQDIPECRAHHPSINYAIKLL 176
Query: 148 RQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSP 207
+QGI ELNV+P++ED TG+LRYVQM VTTYNTS+P ++RY +VQ++LVWNSR+E+S
Sbjct: 177 KQGISELNVQPFNEDAGTGELRYVQMTVTTYNTSIPVAQRYEQARVQVSLVWNSRDERSK 236
Query: 208 NSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGG 267
NS+KL L EFLW NGG RS H IHS+WANFQTST+N+IFG++WRH+ GE D WE GG
Sbjct: 237 NSEKLSLLQEFLWTNGGPRSNLHVIHSIWANFQTSTSNIIFGHKWRHIGGEADLWERFGG 296
Query: 268 IDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKC 327
+DI L P SFGQANT +F+ LL KL KYVP G++V DLY+GAGVIGL++AA+RKCRSV+C
Sbjct: 297 VDICLDPYSFGQANTLSFNSLLHKLIKYVPRGSTVVDLYSGAGVIGLAIAASRKCRSVRC 356
Query: 328 VEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSL 387
VEINK S+LSFEK+ SRLP ++ I+WHN D S EP+ WL GS V +VDPPRKGL S+
Sbjct: 357 VEINKMSKLSFEKSASRLPPNLGCTITWHNTDASAEPIHWLEGSSVAIVDPPRKGLHPSV 416
Query: 388 VHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQIGSKTNSENQSL-PQTLI 446
++ALQ + +ERKA ++SS + K+EKRPWILRA+E +V + S E+ + P+TLI
Sbjct: 417 INALQRVALSERKAFK-AKSSLTKAKDEKRPWILRAREPAVHVDSTIMEESSGIWPETLI 475
Query: 447 YISCGWESFKE 457
YISCGW+SFK+
Sbjct: 476 YISCGWDSFKK 486
>gi|356570137|ref|XP_003553247.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized RNA
methyltransferase pc1998-like [Glycine max]
Length = 468
Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust.
Identities = 267/403 (66%), Positives = 315/403 (78%), Gaps = 16/403 (3%)
Query: 69 LHRPIIVDEATDFFKSI---GLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTH 125
+HRP D + F S L + S ++GWRCRAKLAVRG+ST PLIGLY+EGTH
Sbjct: 17 IHRPPPTDADANLFNSTVPTANLRTSLSSLPVWGWRCRAKLAVRGSSTEPLIGLYEEGTH 76
Query: 126 NVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPAS 185
NVVDIP C+A HP I AAVELLR+GI VEP+ ED+ GDL +VQMAVTTYNTSLP +
Sbjct: 77 NVVDIPQCQADHPNIKAAVELLRRGIFLFCVEPFIEDEGAGDL-HVQMAVTTYNTSLPTA 135
Query: 186 ERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNN 245
+ +NGKVQ+TLVWNSRNE SP SDKL +L FLW+NGG SR H IHSVWANFQTSTNN
Sbjct: 136 QICKNGKVQVTLVWNSRNENSPGSDKLNALVNFLWKNGGPHSRLHLIHSVWANFQTSTNN 195
Query: 246 VIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT----------RAFDILLRKLQKY 295
+IFG++W+HLLGE DFWE+VGGID+SLAPSSFGQANT +AFD LLRKLQKY
Sbjct: 196 IIFGDKWKHLLGERDFWEHVGGIDVSLAPSSFGQANTLRLMPCFVILQAFDALLRKLQKY 255
Query: 296 VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISW 355
VPY ++V DLYAGAGVIGLSLA RKCRS+KC+EINKES SFEKT+ RLP +VD +I+W
Sbjct: 256 VPYESAVADLYAGAGVIGLSLATTRKCRSIKCIEINKESNASFEKTIERLPATVDSSITW 315
Query: 356 HNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEE 415
H+A S EP WL+GSD++V+DPPRKGLD+SL+ AL++I S ERKA S S SS+ +EE
Sbjct: 316 HHAYASKEPFLWLLGSDLVVIDPPRKGLDASLIDALKNISSVERKALS-SSXSSNSSQEE 374
Query: 416 KRPWILRAKEASVQIGSKTNSE-NQSLPQTLIYISCGWESFKE 457
KRPW++RAKE SVQIGSK + QS+PQTL YISCGWE FKE
Sbjct: 375 KRPWVIRAKEDSVQIGSKPPANIAQSVPQTLXYISCGWEIFKE 417
>gi|222619770|gb|EEE55902.1| hypothetical protein OsJ_04570 [Oryza sativa Japonica Group]
Length = 526
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 249/414 (60%), Positives = 317/414 (76%), Gaps = 18/414 (4%)
Query: 46 PSLTCALQCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAK 105
PS + L+C HF SCSGCTHE +L +P ++ E +FFK G+ DFTF RL WRCRAK
Sbjct: 75 PSTSTCLECVHFNSCSGCTHEVDLDKPPVLQEVENFFKGHGVGDFTFSRGRLREWRCRAK 134
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
LA+RGT +PLIGLYQEGTH V DIP C+A I ELN+EP+DED T
Sbjct: 135 LAIRGTPENPLIGLYQEGTHAVADIPECRA---------------ISELNIEPFDEDAST 179
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGS 225
G+LRYVQMAVTTYNTS+P ++RY G+VQ++LVWNSR+E+S N++KL L+EFLWRNGG
Sbjct: 180 GELRYVQMAVTTYNTSIPVAKRYEQGRVQVSLVWNSRDERSKNAEKLSLLSEFLWRNGGP 239
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
RS H IHS+WANFQTST+N+IFG++WRHL+GE D WE GG+DISL P SFGQANT +F
Sbjct: 240 RSNVHLIHSIWANFQTSTSNIIFGHKWRHLIGENDLWERYGGVDISLDPYSFGQANTLSF 299
Query: 286 DILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCV-EINKESQLSFEKTVSR 344
+ LL L KYVP G++V DLY+GAGVIGLSLAA++KCRSVK + EINK S++SFEK+ SR
Sbjct: 300 NALLHTLHKYVPRGSTVVDLYSGAGVIGLSLAASKKCRSVKMLFEINKLSKMSFEKSASR 359
Query: 345 LPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL 404
LP ++ I+WHN D S+EP+ WL GS V++VDPPRKGL S++ ALQ + +ERKA
Sbjct: 360 LPPNLGCTITWHNTDASVEPVHWLEGSSVVIVDPPRKGLHPSVICALQKVALSERKAYK- 418
Query: 405 SESSSSMVKEEKRPWILRAKEASVQIGSK-TNSENQSLPQTLIYISCGWESFKE 457
++S+ + VK+EKRPWILRA+EA+VQ+ S +++ P+TLIYISCGW+SFK+
Sbjct: 419 AKSTLTKVKDEKRPWILRAREAAVQVDSTPLEGSSETWPETLIYISCGWDSFKK 472
>gi|218189624|gb|EEC72051.1| hypothetical protein OsI_04960 [Oryza sativa Indica Group]
Length = 585
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 244/399 (61%), Positives = 309/399 (77%), Gaps = 17/399 (4%)
Query: 60 CSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGL 119
CSGCTHE +L +P ++ E +FFK G+ DFTF RL WRCRAKLA+RGT +PLIGL
Sbjct: 149 CSGCTHEVDLDKPPVLQEVENFFKGHGVGDFTFSRGRLREWRCRAKLAIRGTPENPLIGL 208
Query: 120 YQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYN 179
YQEGTH V DIP C+A I ELN+EP+DED TG+LRYVQMAVTTYN
Sbjct: 209 YQEGTHAVADIPECRA---------------ISELNIEPFDEDASTGELRYVQMAVTTYN 253
Query: 180 TSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANF 239
TS+P ++RY G+VQ++LVWNSR+E+S N++KL L+EFLWRNGG RS H IHS+WANF
Sbjct: 254 TSIPVAKRYEQGRVQVSLVWNSRDERSKNAEKLSLLSEFLWRNGGPRSNVHLIHSIWANF 313
Query: 240 QTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYG 299
QTST+N+IFG++WRHL+GE D WE GG+DISL P SFGQANT +F+ LL L KYVP G
Sbjct: 314 QTSTSNIIFGHKWRHLIGENDLWERYGGVDISLDPYSFGQANTLSFNALLHTLNKYVPRG 373
Query: 300 ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNAD 359
++V DLY+GAGVIGLSLAA++KCRSVKCVEINK S++SFEK+ SRLP ++ I+WHN D
Sbjct: 374 STVVDLYSGAGVIGLSLAASKKCRSVKCVEINKLSKMSFEKSASRLPPNLGCTITWHNTD 433
Query: 360 NSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPW 419
S+EP+ WL GS V++VDPPRKGL S++ ALQ + +ERKA ++S+ + VK+EKRPW
Sbjct: 434 ASVEPVHWLEGSSVVIVDPPRKGLHPSVICALQKVALSERKAYK-AKSTLTKVKDEKRPW 492
Query: 420 ILRAKEASVQIGSK-TNSENQSLPQTLIYISCGWESFKE 457
ILRA+EA+VQ+ S +++ P+TLIYISCGW+SFK+
Sbjct: 493 ILRAREAAVQVDSTPLEGSSETWPETLIYISCGWDSFKK 531
>gi|242055403|ref|XP_002456847.1| hypothetical protein SORBIDRAFT_03g044000 [Sorghum bicolor]
gi|241928822|gb|EES01967.1| hypothetical protein SORBIDRAFT_03g044000 [Sorghum bicolor]
Length = 520
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 253/432 (58%), Positives = 315/432 (72%), Gaps = 31/432 (7%)
Query: 27 PPPPAPPSSLPLDPPAANLPSLTCALQCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIG 86
P P A + LP +A S TC L C HF CSGCTHE +L +P ++ E +FFK G
Sbjct: 65 PKPAAVSTPLPPATVSATASSSTC-LDCVHFGKCSGCTHEVDLDKPPVLQEVANFFKGHG 123
Query: 87 LLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVEL 146
+ DFTF RL WRCRAKLAVRGT +PLIGLYQEGTH+V+DIP C+AHHP INAAV+L
Sbjct: 124 VGDFTFSRGRLSQWRCRAKLAVRGTPENPLIGLYQEGTHDVIDIPECRAHHPSINAAVKL 183
Query: 147 LRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKS 206
LRQGI EL ++P+DED TG+LRYVQMAVTTYNTS+P +RY GKVQI+LVWNSR+E+S
Sbjct: 184 LRQGITELGIQPFDEDAGTGELRYVQMAVTTYNTSIPVDKRYEQGKVQISLVWNSRDERS 243
Query: 207 PNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVG 266
N++KL SL E +IFG++WRHL GE D WE G
Sbjct: 244 QNAEKLISLIE----------------------------IIFGHKWRHLKGERDLWERYG 275
Query: 267 GIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVK 326
G+DISL P SFGQANT +F+ LL KL KYVP G++V DLY+GAGVIGLS+AA+RKCRSVK
Sbjct: 276 GVDISLDPCSFGQANTLSFNSLLHKLNKYVPRGSTVVDLYSGAGVIGLSVAASRKCRSVK 335
Query: 327 CVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSS 386
CVEINK+S++SFE + SRLP ++ I+WHN D S+EP+ WL GS V++VDPPRKGL S
Sbjct: 336 CVEINKQSKMSFETSASRLPANLGCTITWHNTDASVEPVHWLEGSSVVIVDPPRKGLHPS 395
Query: 387 LVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQIGSKTNSE-NQSLPQTL 445
++ ALQ + +ERKA ++SS + VK+EKRPWILRA+EA+V + S T E +++ P+TL
Sbjct: 396 VISALQKVALSERKAYK-AKSSLAKVKDEKRPWILRAREAAVHVDSTTTEEGSETWPETL 454
Query: 446 IYISCGWESFKE 457
IYISCGWESFK+
Sbjct: 455 IYISCGWESFKK 466
>gi|168023511|ref|XP_001764281.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684433|gb|EDQ70835.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 457
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 219/399 (54%), Positives = 290/399 (72%), Gaps = 5/399 (1%)
Query: 60 CSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGL 119
CSGC + +L +P +++EA +F G+ F+ S L WRCRAKLAVRGT+ +P IGL
Sbjct: 1 CSGCVIDVSLDQPPVMNEARAYFAGRGVPSFSLASGSLVEWRCRAKLAVRGTAENPQIGL 60
Query: 120 YQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYN 179
++EGTH++VDIP C+ HHP IN AV+L++Q I++L V+PYDE+ TG+LRY M VTT N
Sbjct: 61 FEEGTHSIVDIPSCRTHHPSINDAVKLVKQAIRDLGVQPYDENRHTGELRY--MVVTTLN 118
Query: 180 TSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANF 239
TS+P ERY GKVQI+LVWN+R+ S DKL +AE +WR G S++ +HSVWANF
Sbjct: 119 TSIPVEERYARGKVQISLVWNARDSDSVQDDKLRKMAEMIWRRGNSKADLPIVHSVWANF 178
Query: 240 QTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYG 299
QTS NVI G RWRHL+GE++ WE VGG+DI+ P+SFGQANT+AF+ LLR++QK V G
Sbjct: 179 QTSRTNVILGGRWRHLMGESELWERVGGVDIAFTPASFGQANTQAFEALLRRMQKVVKVG 238
Query: 300 ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNAD 359
+ V +LYAG G IGLSLAA RKCR VKCVE+NKE++ FE++++RLP SV+ ISWH AD
Sbjct: 239 SRVVELYAGVGAIGLSLAATRKCRVVKCVEVNKEAKPVFERSLTRLPPSVNAEISWHCAD 298
Query: 360 NSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPW 419
S+ P++WL GSDV++VDPPRKGLD +V AL+ + + K + SS + K EKRPW
Sbjct: 299 VSVSPINWLEGSDVVIVDPPRKGLDLPVVEALR-LAAFRGLGKKKAPSSKTTEKVEKRPW 357
Query: 420 ILRAKEASVQIGSKTNSENQS--LPQTLIYISCGWESFK 456
I+RAK++ V + E P TLIY+SCGW++FK
Sbjct: 358 IVRAKQSGVHKEGTLDWEEDDGVWPGTLIYVSCGWQAFK 396
>gi|302798070|ref|XP_002980795.1| hypothetical protein SELMODRAFT_154083 [Selaginella moellendorffii]
gi|300151334|gb|EFJ17980.1| hypothetical protein SELMODRAFT_154083 [Selaginella moellendorffii]
Length = 572
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 217/427 (50%), Positives = 292/427 (68%), Gaps = 2/427 (0%)
Query: 32 PPSSLPLDPPAANLPSLTCALQCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLDFT 91
P D PA + L C HF CSGC E L+ P + +EA FF+ +
Sbjct: 101 PQEEDETDIPAEEEVKTSSKLNCQHFSRCSGCAFENGLNNPPVYNEAVTFFQKRRIAKLQ 160
Query: 92 FDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGI 151
+GWRCRAKLAVRGTS P +GL++E +H++VDIP C+AHHP INAAVEL++ I
Sbjct: 161 LIPSATHGWRCRAKLAVRGTSDDPFVGLFEEHSHSIVDIPECRAHHPSINAAVELIKAVI 220
Query: 152 KELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDK 211
+++ V+PYD++ TG LRY+Q+ V +Y TS+P +R KVQ++LVWNSR+E SP ++
Sbjct: 221 RDVGVQPYDDETCTGQLRYIQLVVNSYVTSVPVEQRKNTCKVQVSLVWNSRDEDSPGTEL 280
Query: 212 LESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDIS 271
L +A LWR GG SR +HS+WANFQT+ N+I G RWR L G ++ WE VGG D+
Sbjct: 281 LHKMAYSLWRRGGQGSRRDLLHSIWANFQTTQTNIILGQRWRRLFGHSELWERVGGADVC 340
Query: 272 LAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEIN 331
APSSFGQAN ++F+ LL++LQ+YV G++V D++AG GVIGLSLAA RKCR VKCVE+N
Sbjct: 341 YAPSSFGQANYQSFEDLLQRLQRYVRKGSAVVDMFAGVGVIGLSLAATRKCRFVKCVEVN 400
Query: 332 KESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHAL 391
K + FE+++SRLP SVD ISWH AD + P++WL G+DV+VVDPPRKGL L+ AL
Sbjct: 401 KHCKEPFERSLSRLPASVDCQISWHCADAAEAPITWLEGADVVVVDPPRKGLQPVLIEAL 460
Query: 392 QSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQI-GSKTNSENQSLPQTLIYISC 450
++ S + K+ S S + + K EKRPW+LRAK+ VQ G T ++ P+ LIY+SC
Sbjct: 461 RT-ASLRAQGKTRSPSRNEIDKVEKRPWMLRAKDGGVQREGETTWRDDDVWPEQLIYVSC 519
Query: 451 GWESFKE 457
GW+SFK+
Sbjct: 520 GWDSFKQ 526
>gi|302756867|ref|XP_002961857.1| hypothetical protein SELMODRAFT_77358 [Selaginella moellendorffii]
gi|300170516|gb|EFJ37117.1| hypothetical protein SELMODRAFT_77358 [Selaginella moellendorffii]
Length = 444
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 209/399 (52%), Positives = 283/399 (70%), Gaps = 2/399 (0%)
Query: 60 CSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGL 119
CSGC E L+ P + +EA FF+ + +GWRCRAKLAVRGTS P +GL
Sbjct: 1 CSGCAFENGLNNPPVYNEAVTFFQKRRIAKLQLIPSATHGWRCRAKLAVRGTSDDPFVGL 60
Query: 120 YQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYN 179
++E +H++VDIP C+AHHP INAAVEL++ I+++ V+PYD++ TG LRY+Q+ V +Y
Sbjct: 61 FEEHSHSIVDIPECRAHHPSINAAVELIKAVIRDVGVQPYDDETCTGQLRYIQLVVNSYV 120
Query: 180 TSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANF 239
TS+P +R KVQ++LVWNSR+E SP ++ L +A LWR GG SR +HS+WANF
Sbjct: 121 TSVPVEQRKNTCKVQVSLVWNSRDEDSPGTELLHKMAYSLWRRGGQGSRRDLLHSIWANF 180
Query: 240 QTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYG 299
QT+ N+I G RWR L G ++ WE VGG D+ APSSFGQAN ++F+ LL++LQ+YV G
Sbjct: 181 QTTQTNIILGQRWRRLFGHSELWERVGGADVCYAPSSFGQANYQSFEDLLQRLQRYVRKG 240
Query: 300 ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNAD 359
++V D++AG GVIGLSLAA RKCR VKCVE+NK + FE+++SRLP SVD ISWH AD
Sbjct: 241 SAVVDMFAGVGVIGLSLAATRKCRFVKCVEVNKHCKEPFERSLSRLPASVDCQISWHCAD 300
Query: 360 NSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPW 419
+ P++WL G+DV+VVDPPRKGL L+ AL++ S + K+ S S + + K EKRPW
Sbjct: 301 AAEAPITWLEGADVVVVDPPRKGLQPVLIEALRT-ASLRAQGKTRSPSRNEIYKVEKRPW 359
Query: 420 ILRAKEASVQI-GSKTNSENQSLPQTLIYISCGWESFKE 457
+LRAK+ VQ G T ++ P+ LIY+SCGW+SFK+
Sbjct: 360 MLRAKDGGVQREGETTWRDDDVWPEQLIYVSCGWDSFKQ 398
>gi|46447632|ref|YP_008997.1| 23S rRNA (Uracil-5-)-methyltransferase [Candidatus Protochlamydia
amoebophila UWE25]
gi|51316627|sp|Q6M9M7.1|Y1998_PARUW RecName: Full=Uncharacterized RNA methyltransferase pc1998
gi|46401273|emb|CAF24722.1| putative 23S rRNA (Uracil-5-)-methyltransferase [Candidatus
Protochlamydia amoebophila UWE25]
Length = 383
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 144/407 (35%), Positives = 205/407 (50%), Gaps = 67/407 (16%)
Query: 51 ALQCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRG 110
AL CPHF SC+GC+H+ + PI + +F ++ L+ L GWRCRAKLAVRG
Sbjct: 9 ALSCPHFDSCAGCSHQLFVEPPIWREVIENFKET---LNPILHQGTLTGWRCRAKLAVRG 65
Query: 111 TSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRY 170
T +P+IGL+++G+H ++IP C HHPRIN AV +++ ++ + PY E + GDLRY
Sbjct: 66 TKQNPIIGLFKKGSHEALNIPFCLVHHPRINQAVTMIQNWMERHQLNPYQEHSQAGDLRY 125
Query: 171 VQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREH 230
+Q V ER +GKVQI V N ++ SP S L L +
Sbjct: 126 LQFVV----------ER-ASGKVQIVFVLNFKDFSSPESQIWRKLLLEL----AQETTNA 170
Query: 231 YIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLR 290
+ HS+W NF N IF ++W + GE WE+ G+ I PS+F QAN F+ LL+
Sbjct: 171 FWHSIWVNFNPHATNTIFTDKWEKVWGEPYLWESFDGVKICFQPSNFAQANLDLFEKLLK 230
Query: 291 KLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVD 350
K++ +V A V + +AG G IGLS+AA KC +KC EIN S+ F +L +
Sbjct: 231 KVKSWVREKAKVVEFFAGVGTIGLSVAA--KCSWIKCEEINPHSKECFYYAKQQLSSEIS 288
Query: 351 GNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSS 410
I ++ ++ E L+ L G+D ++VDPPRKGL + L
Sbjct: 289 QKIMFYTG-SADENLNLLQGADTVIVDPPRKGLSRKFIEGL------------------- 328
Query: 411 MVKEEKRPWILRAKEASVQIGSKTNSENQSLPQTLIYISCGWESFKE 457
QS LIY+SCGW+SFK+
Sbjct: 329 ---------------------------TQSSVDQLIYVSCGWDSFKK 348
>gi|359496715|ref|XP_003635311.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized RNA
methyltransferase pc1998-like, partial [Vitis vinifera]
Length = 301
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 143/226 (63%), Positives = 162/226 (71%), Gaps = 26/226 (11%)
Query: 251 RWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAG 310
R LLG E+VGGID++LAPSSFGQANT+ + + QKYVPYGA+V LYAGAG
Sbjct: 6 RRNRLLGS----EHVGGIDVALAPSSFGQANTQKSYLYVS--QKYVPYGAAVAHLYAGAG 59
Query: 311 VIGLSLAAARKCR-----SVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE-- 363
VIGLSLAA RK R SVKC+EINKE++LSFEKTV LP S+D ISWH+AD I
Sbjct: 60 VIGLSLAATRKSRQERGWSVKCIEINKEAKLSFEKTVGCLPMSIDSTISWHHADTPISDK 119
Query: 364 -----------PLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMV 412
PLSWLVGSDV+VVDPPR GLD LV ALQ+I AE++ KS +E S S V
Sbjct: 120 LPILLKIKYRGPLSWLVGSDVVVVDPPRNGLDPYLVDALQTISFAEKRTKS-TERSFSKV 178
Query: 413 KEEKRPWILRAKEASVQIGSKTNS-ENQSLPQTLIYISCGWESFKE 457
K EKRPWIL AKEASVQI + S E QSLP+TLIYISCGWESFKE
Sbjct: 179 KNEKRPWILHAKEASVQIEKQNISGEGQSLPKTLIYISCGWESFKE 224
>gi|307111216|gb|EFN59451.1| hypothetical protein CHLNCDRAFT_18919 [Chlorella variabilis]
Length = 474
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 151/361 (41%), Positives = 197/361 (54%), Gaps = 19/361 (5%)
Query: 52 LQCPHFQSCSGCTHEFNLHRPIIVDEATDFF-KSIGLLDFTFDSCRLYGWRCRAKLAVR- 109
LQCPHF SCSGCT + L P ++ EA FF + GL FT ++GWR RA+LAVR
Sbjct: 73 LQCPHFASCSGCTVDTGLDAPPLLHEARAFFERDCGLPAFTLHVGNIHGWRQRARLAVRR 132
Query: 110 GTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLR 169
GT +IGL++E TH IP C HHP IN A LL+Q ++ VEPYDE RTG LR
Sbjct: 133 GTEGQTVIGLFEERTHMATAIPSCVVHHPAINEAAALLQQAVEACGVEPYDEGQRTGQLR 192
Query: 170 YVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSR-SR 228
YVQ+ S A+ VQ+ LV +S S LWR G R
Sbjct: 193 YVQLTAVQQRDSGGAA---LAPAVQLVLVSSSSRLASLADQ--------LWRVGQRRPDG 241
Query: 229 EHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDIL 288
+HS+WANFQ +N I G WR L G W +GG DI+ P SF QAN A D
Sbjct: 242 TPLLHSLWANFQPERSNKILGPEWRLLHGPDLAWARLGGADIAFGPGSFMQANREAMDCC 301
Query: 289 LRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKS 348
L +Q+YV G+++ DL+AG G IGLSLAA + R V+ VEIN F ++ +RL
Sbjct: 302 LAVMQQYVAPGSTIADLHAGVGTIGLSLAATCRPRWVRFVEINGHGLPPFRQSGARLRLR 361
Query: 349 VDG-----NISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKS 403
+ + +H A +P W G++V+V DPPRKGL+++L+ L S +A +S
Sbjct: 362 LLERGEAPQLDYHVAAAGSDPGRWCHGAEVVVCDPPRKGLEAALLGWLCSPAAAAAGVRS 421
Query: 404 L 404
L
Sbjct: 422 L 422
>gi|302834393|ref|XP_002948759.1| hypothetical protein VOLCADRAFT_41894 [Volvox carteri f.
nagariensis]
gi|300265950|gb|EFJ50139.1| hypothetical protein VOLCADRAFT_41894 [Volvox carteri f.
nagariensis]
Length = 489
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 158/443 (35%), Positives = 224/443 (50%), Gaps = 43/443 (9%)
Query: 40 PPAANLPSLTCALQCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYG 99
P A + L L C F SCSGC+ + L P + EA +FF+ +GL + G
Sbjct: 3 PGAVAVADLRSELGCARFGSCSGCSLQDGLAAPPLYGEAVEFFRGLGLTEVPAVMKAARG 62
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDI--------PHCKAHHPRINAAVELLRQGI 151
WRCRAKLAVRG PLIGL++EG+H VVDI P C+AHHPRIN A L+++
Sbjct: 63 WRCRAKLAVRGPVGRPLIGLFREGSHEVVDIVGPISPLPPACRAHHPRINEAAALIKE-- 120
Query: 152 KELNVEPYDEDDRT---GDLRYVQMAVTTYNTSLPASERYRN-----GKVQITLVWNSRN 203
V P E G LRY+Q+ T++P+ R VQ+ LV N+
Sbjct: 121 ----VRPGTEAAAVAAGGLLRYLQL------TAVPSQPGGRAEDDPLAAVQVVLVLNAPP 170
Query: 204 EKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQ-TSTNNVIFGNRWRHLLGETDFW 262
E P+ + E + + S +HS+W NFQ + N + G WRH+ G W
Sbjct: 171 ECEPDDPRKEPKSRARAKAQKPPSVAPLVHSIWLNFQPDAARNSVLGEGWRHMAGPAAAW 230
Query: 263 ENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKC 322
+ GG+ + P SF QAN A ++L ++ VPYG+ VT+L+AG GVIGLSLA R+
Sbjct: 231 QEFGGVAACVGPGSFVQANYGAMQLVLGEIANMVPYGSRVTELHAGIGVIGLSLATRRRL 290
Query: 323 RSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSI-------EPLSWLVGSDVLV 375
+++CVE+N + F ++ R ++ +W + +P +L G DVLV
Sbjct: 291 AALRCVEVNPAAAEPFRTSLERAMRT-----TWASTQEQQQQQVAGSQPERFLEGCDVLV 345
Query: 376 VDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQIGSKTN 435
VDPPRKGL SL+ AL + A S S SSSS + A + G+
Sbjct: 346 VDPPRKGLGQSLLAALTRQPQSPESALSSSSSSSSSSSSSSKAAAAVAATVAATHGAVPE 405
Query: 436 SENQS--LPQTLIYISCGWESFK 456
+ S LP L+Y+SCG+ + +
Sbjct: 406 AAGCSPALPSRLVYLSCGFRALQ 428
>gi|359496703|ref|XP_003635306.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized RNA
methyltransferase pc1998-like [Vitis vinifera]
Length = 218
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 121/179 (67%), Positives = 137/179 (76%), Gaps = 15/179 (8%)
Query: 293 QKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGN 352
QKYVPYGA+VTDLYAGAGVI LSLAA RK RS+KC+EINKE++LSFEKTV LP S+D
Sbjct: 25 QKYVPYGAAVTDLYAGAGVIRLSLAATRKRRSIKCIEINKEAKLSFEKTVGCLPMSIDST 84
Query: 353 ISWHNADNSIE-------------PLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAER 399
ISW++AD I PLSWLVGSDV+VVDPPR GLD LV ALQ+I AE+
Sbjct: 85 ISWNHADTPISDKLLILLKIKYRGPLSWLVGSDVVVVDPPRNGLDLYLVDALQTISFAEK 144
Query: 400 KAKSLSESSSSMVKEEKRPWILRAKEASVQIGSKTNS-ENQSLPQTLIYISCGWESFKE 457
+ +S +E S S VK EKRPWILRAKEASVQI + S E QSLP+TLIYISCGWESFKE
Sbjct: 145 RTRS-TERSFSKVKNEKRPWILRAKEASVQIEKQNISGEGQSLPKTLIYISCGWESFKE 202
>gi|428172527|gb|EKX41435.1| hypothetical protein GUITHDRAFT_48183, partial [Guillardia theta
CCMP2712]
Length = 391
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 141/400 (35%), Positives = 211/400 (52%), Gaps = 49/400 (12%)
Query: 52 LQCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSI---GLLDFTFDSCRLYGWRCRAKLAV 108
L+C HF +C GC E NLH ++EA F ++ +F + +++ WR AKLAV
Sbjct: 2 LRCVHFGACPGCIVEANLHDTPTINEAKMFLGALTKQAGREFEVNMGQIHRWRTLAKLAV 61
Query: 109 RGTSTSP--LIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTG 166
T+ IGLY+ GTH+V+ IP C+ HHP IN AV +L++ + + ++ YDE G
Sbjct: 62 SPTNNEMGFEIGLYKSGTHDVLAIPRCRVHHPSINEAVSILQEEMLAVGIQAYDEKSSEG 121
Query: 167 DLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRN--EKSPNSDKLESLAEFLWRNGG 224
LRYVQM V ER+ N KVQ+T+VWN+ N + SP + L +
Sbjct: 122 HLRYVQMMV----------ERHSN-KVQMTMVWNAENFRDASPQAQLLVKRLKLY----- 165
Query: 225 SRSREHYIHSVWANFQTSTNNVIFG---NRWRHLLGETDFWENV-GGIDIS--LAPSSFG 278
HS+W N++T T NVIF +W+ L+G E + G+++S +APS F
Sbjct: 166 -----DIFHSIWINYRTGTGNVIFNRDEKKWQLLIGPKYVAERIEAGLNLSFPIAPSMFR 220
Query: 279 QANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSF 338
Q N F +++K++ ++ G+ V +LYAGAG++GLS AA + C ++C + N + +F
Sbjct: 221 QGNLEQFTAIIQKVETFIEPGSKVCELYAGAGMVGLS-AALQNCEWLRCSDENPANLDAF 279
Query: 339 EKTVSRLPKSVDGNISW--HNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGS 396
T LP + + +A+ +IE + G+DVL+VDPPRKGL+ L H +QS
Sbjct: 280 LATKQSLPIDLKRKAYYTTSSAEEAIED-GQVDGADVLIVDPPRKGLE-LLAHWIQSKSP 337
Query: 397 AERKA--------KSLSESSSSMVKEEKRPWILRAKEASV 428
E K K+L E M+ K W L E V
Sbjct: 338 TELKKVIYISCGFKALKEDLKVMLSGNK--WKLTHAEGHV 375
>gi|255078480|ref|XP_002502820.1| predicted protein [Micromonas sp. RCC299]
gi|226518086|gb|ACO64078.1| predicted protein [Micromonas sp. RCC299]
Length = 569
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 123/364 (33%), Positives = 183/364 (50%), Gaps = 26/364 (7%)
Query: 51 ALQCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVR- 109
+L CPHF +CSGC+ NL + A ++F F + + GWR RA+LA R
Sbjct: 67 SLGCPHFDTCSGCSTSTNLDDFPELRRAREYFARSHDAAFDCATGDVRGWRTRARLAARM 126
Query: 110 ------GTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
+GL+ G+H++V+IP C HPR+N A L+ + + YDE
Sbjct: 127 VPDEDAAGGEKLALGLFARGSHDLVEIPGCVVQHPRLNDAAALIASACERAGIRAYDETT 186
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSP----NSDKLESLAEFL 219
G+LRYVQ+ + ++ + VQ+ LVWNS + + + +LA L
Sbjct: 187 GEGELRYVQLTAVGADGR---ADLDTDAAVQVALVWNSPAPTTAAGPMTAPRAIALALKL 243
Query: 220 WRNGGSRSREHY-------IHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISL 272
W + + +HSVW ++ + N I G W HL GE W G D+
Sbjct: 244 WNSNSADGPGDIEPPNGVRVHSVWIDWNDAPGNKITGPHWTHLKGERFVWARHGAADVCF 303
Query: 273 APSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAA-----ARKCRSVKC 327
P SF QAN+RAFD L +++ +V GA+V++LYAGAG IGLS+AA SV+C
Sbjct: 304 TPGSFVQANSRAFDAALERIRSFVFRGAAVSELYAGAGPIGLSIAATMGEDGDDEGSVRC 363
Query: 328 VEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSL 387
VEI + +FE++ S+LP+ V +S + + +DV++VDPPR GLD
Sbjct: 364 VEIVGAAAETFERSKSKLPEGVGRRVSMAISRAEDACRDAVRDADVVIVDPPRMGLDPRT 423
Query: 388 VHAL 391
+ AL
Sbjct: 424 LTAL 427
>gi|298707385|emb|CBJ30020.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 516
Score = 198 bits (503), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 135/375 (36%), Positives = 198/375 (52%), Gaps = 46/375 (12%)
Query: 43 ANLPSLTCALQCPHFQSCSGCTHEFNLHR-PIIVDEATDFFKSI------------GLLD 89
A LP L+C HF++C+GC + PI+VD ++ F S+ D
Sbjct: 103 AALPRAGDELKCRHFKACAGCVFDRRFDETPIMVDSSS-FMDSLHSTGARARGGAKAASD 161
Query: 90 F---TFDSCRLYGWRCRAKLAVRGTST--SPLIGLYQEGTHNVVDIPHCKAHHPRINAAV 144
F + +GWR AKLA R S +GLY G+HNV+ IP C+ HHP +N AV
Sbjct: 162 FEPHVIHPWKPHGWRTLAKLAARPVSKWRGVELGLYSAGSHNVIGIPDCRVHHPSVNLAV 221
Query: 145 ELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNE 204
+ L++ K++ V + +++ GDLRYVQMAV ER +G+VQ+TLVWN N
Sbjct: 222 KTLQESTKKIGVTGFRQENLDGDLRYVQMAV----------ERT-SGQVQLTLVWNEENY 270
Query: 205 KSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFG---NRWRHLLGETDF 261
+ + KL+ LA+ L SR HS+W NF+ N IF + W G
Sbjct: 271 RDA-TPKLQLLAKDL-----RSSRPELFHSIWVNFRVGVGNAIFSRDPHSWHRCSGPEYL 324
Query: 262 WENVG--GIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAA 319
E VG I +P F Q N F+ +++ + +VP G+ V +LYAG GV+GL++AA
Sbjct: 325 KEVVGPSKIPFFFSPPLFRQGNLDHFESIVQAVVDWVPEGSGVCELYAGVGVLGLNVAA- 383
Query: 320 RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWH--NADNSIEPLSWLVGSDVLVVD 377
K V+C ++N + SFE++ LP +V +S+ +AD ++E G +VL+VD
Sbjct: 384 -KAAFVRCSDVNSFNPRSFERSRKTLPPNVRKRVSFEAMSADEAMED-GESEGCEVLIVD 441
Query: 378 PPRKGLDSSLVHALQ 392
PPRKGLD ++ AL
Sbjct: 442 PPRKGLDKGVMDALM 456
>gi|422293504|gb|EKU20804.1| hypothetical protein NGA_0593800 [Nannochloropsis gaditana CCMP526]
Length = 644
Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 123/357 (34%), Positives = 184/357 (51%), Gaps = 39/357 (10%)
Query: 51 ALQCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLD-FTFD-SCRLYGWRCRAKLAV 108
ALQC HF +CSGC + L +++ A FF+ + D F+ + ++GWR +AKLAV
Sbjct: 248 ALQCEHFGACSGCFYRSGLVETPVMENARVFFQRVARYDNFSLGLATGVHGWRTQAKLAV 307
Query: 109 RGTSTSPL-------IGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDE 161
+PL +GLY+EG+H V+ IP+C+ HHP IN AV++L + + +D
Sbjct: 308 -----APLSKWGGCQLGLYEEGSHRVLPIPNCRVHHPSINRAVQVLTEATVTMKTRAFDP 362
Query: 162 DDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
G LRYVQ+AV ER R G++Q+TLVWN+ +K + L+ L
Sbjct: 363 ASLGGSLRYVQVAV----------ER-RTGRIQLTLVWNAPGKKEAGGE----LSRLLKA 407
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNR---WRHLLGETDFWENVGGID--ISLAPSS 276
+ + HS+W NF+T N IF W L G E +G L P
Sbjct: 408 LKAADTSGELWHSIWVNFRTGPGNTIFAREARSWTKLFGADFLTEKIGPSQTLFYLTPQL 467
Query: 277 FGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
F Q N F+ L+ + Q++VP + V +LY G GVIGL++ K +++ +IN
Sbjct: 468 FRQGNLDGFEKLVTRAQEFVPAQSVVCELYGGGGVIGLNMLG--KAAALRFSDINPYLGQ 525
Query: 337 SFEKTVSRLPKSVDGNISWHNADNSIEPL--SWLVGSDVLVVDPPRKGLDSSLVHAL 391
+KT+ LP +S+ A ++E L G+ VL+VDPPRKGL+S ++ L
Sbjct: 526 CVDKTLQVLPAKKREKVSFIIA-TALEALEAGHADGATVLIVDPPRKGLESEVLAHL 581
>gi|452824264|gb|EME31268.1| RNA methyltransferase [Galdieria sulphuraria]
Length = 465
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 119/387 (30%), Positives = 181/387 (46%), Gaps = 37/387 (9%)
Query: 16 TCRVSLGAVRNPPPPAPPSSLPLDPPAANLPSLTCALQCPHFQSCSGCTHEFNLHRPIIV 75
+CRV GA N + S++ L C HF C GC +L P
Sbjct: 49 SCRVLHGARSNLQETEKRQE------NCKVTSVSDTLDCQHFSFCDGCLLAQSLTTPPCS 102
Query: 76 DEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTS-PLIGLYQEGTHNVVDIPHCK 134
+ ++F + ++GWR A+LAVR IGL++E +H+VV+IPHC+
Sbjct: 103 KKIEEYFWKQKVRVLFHSDTPVHGWRSVARLAVRRDDKGRTRIGLFKEDSHSVVEIPHCR 162
Query: 135 AHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQ 194
HHP IN +E +++ +KE V YDED G LRY+QM+V +R+ +Q
Sbjct: 163 VHHPLINGEMETVKKAMKETGVSGYDEDREEGQLRYIQMSV-----------EHRSQTLQ 211
Query: 195 ITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFG---NR 251
VW+ +P + L + R+ S + HS+W NF TS N IF +
Sbjct: 212 AAFVWH-----APRLKEAGPLCKRFMRSLERSSSK--FHSLWLNFNTSRGNRIFNFDQSS 264
Query: 252 WRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGV 311
W G+ E++GG++I P F Q+N L++++ KY+ V + YAG G
Sbjct: 265 WLLYSGKRYALESIGGVNIYFPPYVFRQSNIEMLKELVKEISKYIEPRTKVLEFYAGVGA 324
Query: 312 IGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW---- 367
IG+ +A V E+N S+ ++ K L S HNA+ I +
Sbjct: 325 IGIPVAYLSGAELVGACELNGLSKEAYLKATWALTPS-----QRHNAEFFIGTAAAHRDK 379
Query: 368 LVGSDVLVVDPPRKGLDSSLVHALQSI 394
L S+V++VDPPR G+D +L L S+
Sbjct: 380 LRFSEVIIVDPPRSGMDYALAARLSSV 406
>gi|145344558|ref|XP_001416797.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577023|gb|ABO95090.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 441
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 124/421 (29%), Positives = 186/421 (44%), Gaps = 66/421 (15%)
Query: 51 ALQCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSI----GLLDFTFDSCRLYG-----WR 101
A C H+ C+GC RP A +F S+ G T ++ Y WR
Sbjct: 30 AFDCAHWPRCAGCVDVDAPLRPEAEARARAYFASLDARAGETGETRETHETYRGRATRWR 89
Query: 102 CRAKLAVRGTSTSPLIGLYQEGTHN---VVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+AKLA R +GL+ G+H + D C + A+ L+R+ ++V+
Sbjct: 90 VKAKLAARAHEGETRLGLFARGSHALEPIDDASGCAVSAIAVERAMALVREVCASMDVKG 149
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE G+LRY Q+ T + + + + I+LVWN+R + +P + ++ E
Sbjct: 150 YDETTGNGELRYAQIVAQTRTAGQWDAAKDEDARAAISLVWNAR-KMTP---RAMAVCEE 205
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNR-WRHLLGETDFWENV-GGIDISLAPSS 276
+ R GG ++H W N Q + NNVIF N W H GE + G + P S
Sbjct: 206 IARRGGD-----FVHGTWVNAQDARNNVIFNNDGWHHATGERETHSYTPNGAKVFYLPGS 260
Query: 277 FGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAA--ARKCRSVKCVEINKES 334
F QAN A+ LL+++ ++VP A V ++YAG G IG SL A +S++CVE +
Sbjct: 261 FMQANAEAYGELLKRMPRHVPKNARVVEMYAGVGAIGFSLLTNDALGVKSLRCVESSSAV 320
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSI 394
++E+T LP+ + G S + DVL+VDPPRKGLD+ L L +
Sbjct: 321 AEAWERTRGELPEDLRGRASLQVEKAERIAVESTKDCDVLIVDPPRKGLDAKLRAVLTDV 380
Query: 395 GSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQIGSKTNSENQSLPQTLIYISCGWES 454
LS+ QTL+Y+SCG+ES
Sbjct: 381 -------DGLSDD----------------------------------LQTLLYVSCGFES 399
Query: 455 F 455
F
Sbjct: 400 F 400
>gi|219113673|ref|XP_002186420.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209583270|gb|ACI65890.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 475
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 119/408 (29%), Positives = 194/408 (47%), Gaps = 85/408 (20%)
Query: 74 IVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHC 133
+V +A FF + +FT WR AKLAVR + +GL+ G+HN+V +P C
Sbjct: 85 LVQKAVHFFAQQNVPNFTVFCGPAKAWRTVAKLAVRNVNNELTVGLFAPGSHNLVAVPDC 144
Query: 134 KAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKV 193
AHHP +N V++L++ + + +DE TG+LR+V + V ER G V
Sbjct: 145 PAHHPSVNCTVDVLQETARRSGIRAFDEVTGTGNLRHVAINV----------ERA-TGSV 193
Query: 194 QITLVWNSRNE------KSPNSDKLESLAEFLWRNGGSRSREH--YIHSVWANFQTS--T 243
Q+TLVW ++ S+ L+ L + L + G S E +HS+W ++ +
Sbjct: 194 QLTLVWKFTDQPADATTNKEESEALDRLCKKLIQQGTSSKGESSLTLHSLWVHYNAAWKH 253
Query: 244 NNVIFGN--RWRHLLGETDFWENVG----GIDISLAPSSFGQANTRAFDILLRKLQKYVP 297
+N IF + RW H G EN+ I + P+ F QAN AF ++RK++ +
Sbjct: 254 DNAIFNHTGRWEHRHGPKSIVENLAIDDLKIPLQFPPNVFRQANLDAFTGIIRKIRNVLQ 313
Query: 298 YGASVT-------DLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVD 350
AS++ +LY G G +GL +A CRS+ + N ++ FE+TV ++ K D
Sbjct: 314 ERASLSAAPPACVELYGGVGTLGLHVADL--CRSLVSSDENPHNKACFEETVRQM-KVSD 370
Query: 351 GNISWHNADNSIEPLS--WLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESS 408
G++S+ + N+ E ++ L +D +VVDPPRKGLD ++ A+ +
Sbjct: 371 GSVSYKSL-NATEMVNSGVLNEADWIVVDPPRKGLDDVVLGAMAEV-------------- 415
Query: 409 SSMVKEEKRPWILRAKEASVQIGSKTNSENQSLPQTLIYISCGWESFK 456
+ PQ L+Y+SCG+++F+
Sbjct: 416 -------------------------------TRPQILVYVSCGFDAFQ 432
>gi|219122341|ref|XP_002181505.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406781|gb|EEC46719.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 604
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 140/516 (27%), Positives = 215/516 (41%), Gaps = 131/516 (25%)
Query: 31 APPSSLPLDPPAA------------NLPSLTCALQCPHFQSCSGCTHEFNLHRPIIVDEA 78
AP SLP P N L ++ C HF SCSGC + + ++ A
Sbjct: 90 APAKSLPSGPRVVLTRYAANRNDRVNKERLAESIGCEHFGSCSGCVRDDQVGSVDVIQSA 149
Query: 79 TDFFKSIGL-----------LDFTFDS-----------CRLYGWRCRAKLAVRGTSTSPL 116
+F S + LD+ + + GWR +AKLAV S+S
Sbjct: 150 KLYFSSTAVRKKRHDVLTQGLDWAVEDQDDGFYQVVVPSAVRGWRTQAKLAVAPKSSSWA 209
Query: 117 -----IGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYV 171
GLYQ GTH+V+ IP C+ HHP IN A++ LR + + +D R G LRYV
Sbjct: 210 RDGCEFGLYQRGTHDVLAIPSCEVHHPAINRALDALRLATAKTGTAAFAKDTRDGGLRYV 269
Query: 172 QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHY 231
Q+ V ER KV +TLVWN+ K + E ++RE
Sbjct: 270 QLQV----------ERPTQ-KVSLTLVWNAELLKETQPALARLVKEL-------QTREPD 311
Query: 232 I-HSVWANFQTSTNNVIFGN---RWRHLLGETDFWENVGGID---ISLAPSSFGQANTRA 284
+ HS+W + N IF RW L G E + + + +P +F Q N
Sbjct: 312 LWHSMWCHCNNGIGNNIFARNPRRWHRLSGMEYMREPIAVGNQGWLYFSPLTFRQGNLDG 371
Query: 285 FDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAA-----ARKCRSVKCVEINKESQLSFE 339
FD+L + + VP G+ V +LYAG G++GL+ A ++C + N + F+
Sbjct: 372 FDVLATDVARAVPGGSKVCELYAGVGLLGLTTLAHLAKEGTPLEWIRCSDENPSNPRCFQ 431
Query: 340 KTVSRLPKSVDG--------------------------NISWHNADNSIEPLSWLV---- 369
+++ LP V G S ++N +E S++V
Sbjct: 432 RSIESLPLEVTGLDRRTNRKSKEDQGMTLAELADLIEAGESSSRSENDMEKASYMVATAA 491
Query: 370 ---------GSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSM-VKEEKRPW 419
G+DV++VDPPRKGL+ + L+S+ + + ES + + + ++K W
Sbjct: 492 QALQRGEALGADVIIVDPPRKGLEDEV---LESLCQPYKADQPYVESVNLLTIADDKVNW 548
Query: 420 ILRAKEASVQIGSKTNSENQSLPQTLIYISCGWESF 455
TN +TLIY+SCG+++
Sbjct: 549 --------------TND-----VETLIYVSCGFDAL 565
>gi|297598200|ref|NP_001045219.2| Os01g0920300 [Oryza sativa Japonica Group]
gi|57899423|dbj|BAD88361.1| unknown protein [Oryza sativa Japonica Group]
gi|57899853|dbj|BAD87637.1| unknown protein [Oryza sativa Japonica Group]
gi|255674005|dbj|BAF07133.2| Os01g0920300 [Oryza sativa Japonica Group]
Length = 176
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 67/123 (54%), Positives = 94/123 (76%), Gaps = 2/123 (1%)
Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIG 395
+SFEK+ SRLP ++ I+WHN D S+EP+ WL GS V++VDPPRKGL S++ ALQ +
Sbjct: 1 MSFEKSASRLPPNLGCTITWHNTDASVEPVHWLEGSSVVIVDPPRKGLHPSVICALQKVA 60
Query: 396 SAERKAKSLSESSSSMVKEEKRPWILRAKEASVQIGSK-TNSENQSLPQTLIYISCGWES 454
+ERKA ++S+ + VK+EKRPWILRA+EA+VQ+ S +++ P+TLIYISCGW+S
Sbjct: 61 LSERKAYK-AKSTLTKVKDEKRPWILRAREAAVQVDSTPLEGSSETWPETLIYISCGWDS 119
Query: 455 FKE 457
FK+
Sbjct: 120 FKK 122
>gi|95930707|ref|ZP_01313440.1| RNA methyltransferase, TrmA family [Desulfuromonas acetoxidans DSM
684]
gi|95133187|gb|EAT14853.1| RNA methyltransferase, TrmA family [Desulfuromonas acetoxidans DSM
684]
Length = 467
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 102/356 (28%), Positives = 163/356 (45%), Gaps = 50/356 (14%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF--TFDSCRLYGWRCRA 104
C ++CSGC H+ + R +I D A + ++G + + S +G+R A
Sbjct: 83 CKLAKNCSGCPLIHLGYRHQLDFKRGMIED-ALSHYPTLGHVTVHAVWSSEETFGYRTIA 141
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
KLA+ +GLY+ G+H V+DI +C HP IN + LR+ I++ ++ Y+ R
Sbjct: 142 KLAIAKVHGKARVGLYKRGSHQVLDIGNCPQQHPLINQIAQALREEIEKQDIYVYNPVSR 201
Query: 165 TGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGG 224
G LRYV + V+ P + K +TLV RN + ++ LA++L
Sbjct: 202 RGLLRYVAIRVS------PQAN-----KALVTLVTTERNYR-----EMTHLAKWL----- 240
Query: 225 SRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRA 284
+ + I V N ST NVIFG+ ++G D + VG I + L+P+SF Q N R
Sbjct: 241 -KKKVPQIIGVHQNINASTGNVIFGSTTVKVIGAGDLIDQVGDIRLRLSPTSFFQVNNRQ 299
Query: 285 FDILLRKLQKYVPYG--ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTV 342
+ ++Q + G + DLY G G I + LA + V +EIN+++ + +
Sbjct: 300 AARIYAQVQSWADLGPKDTAVDLYCGVGGIAMHLATSGA--KVTGIEINEDAIFNAKAAA 357
Query: 343 S-------RLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHAL 391
R G I H+ + PL V VV+PPR G ++ L
Sbjct: 358 ELNELGNCRFIVGDAGEI-LHDMQRELSPLK------VAVVNPPRGGCSEEIIATL 406
>gi|189424927|ref|YP_001952104.1| RNA methyltransferase [Geobacter lovleyi SZ]
gi|189421186|gb|ACD95584.1| RNA methyltransferase, TrmA family [Geobacter lovleyi SZ]
Length = 485
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 143/298 (47%), Gaps = 32/298 (10%)
Query: 96 RLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELN 155
R G+R AKLAV GT P IG+Y+ +H+VVD+ C HHP IN + ++R+GI++L
Sbjct: 151 RRLGYRTTAKLAVAGTHADPYIGIYRRASHDVVDLEDCPLHHPMINTVIRVVREGIRKLK 210
Query: 156 VEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESL 215
V Y E +++G LRY+ + V+ + +V +T V R +++ L
Sbjct: 211 VPVYQEKNKSGILRYLVVRVSESSN-----------EVMVTFVTARR-----AFNEIHHL 254
Query: 216 AEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPS 275
A FL + + + V N +S NVIFG L + E +G +++ ++P
Sbjct: 255 ARFL------QEKVPQVAVVCQNVNSSEGNVIFGAHDHFLTRQQTIQERIGQVELLVSPR 308
Query: 276 SFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
SF QA +L + + S V DLY G G I L+LA R V VE+NKE
Sbjct: 309 SFLQAQNDGARLLYETARDWAGLDGSQQVLDLYCGIGGIALTLAPV--ARQVLGVELNKE 366
Query: 334 SQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLV 388
+ ++ K +RL + N + D L +V++PPRKG D ++
Sbjct: 367 A-VADAKRNARLNNA--RNCRFEAGDVLELLDDLLEDELRFSCIVLNPPRKGCDREVL 421
>gi|335039256|ref|ZP_08532431.1| RNA methyltransferase, TrmA family [Caldalkalibacillus thermarum
TA2.A1]
gi|334180849|gb|EGL83439.1| RNA methyltransferase, TrmA family [Caldalkalibacillus thermarum
TA2.A1]
Length = 453
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 101/376 (26%), Positives = 167/376 (44%), Gaps = 44/376 (11%)
Query: 54 CPHFQSCSGCT-----HEFNL-----HRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCR 103
CP + C GC +E L H + T + T +G+R +
Sbjct: 73 CPLYDRCGGCQLQHLDYEAQLEAKKDHVIQAFERYTHLTADTLPIKPTIGMVNPWGYRNK 132
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
+L + + GLY+ G+H +VD+ C HP IN V +R+ I+ LN+ Y+E
Sbjct: 133 GQLQISTAGNQVMAGLYEPGSHRLVDLTDCMIQHPLINDVVAKVRKIIQHLNIPVYNERK 192
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNG 223
RTG +R + M + T Q+ LV +R E+ P +L L E
Sbjct: 193 RTGVIRTI-MVRVGFQTE------------QLQLVLITRTEEIPRLKEL--LMEI----- 232
Query: 224 GSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTR 283
R + S+W N + ++ IFG +++ L GE E +G + L+P +F Q N
Sbjct: 233 --RYHIPQLTSIWQNIHPAKSSKIFGEKFKLLWGERHIIERLGDLSFKLSPRAFFQLNPL 290
Query: 284 AFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+ +++ Y +V D Y G G IGL L AR+ + V+ ++ KE+ + K
Sbjct: 291 QTIKMYDQVKAYAALTGQENVVDAYCGVGTIGLWL--AREAKEVRGMDTIKEA-IEDAKL 347
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSIGSAE 398
++L + + A+ WL DV+VVDPPR G D L+HA+ + S
Sbjct: 348 NAKLNGLANAHFEVGRAETYFP--RWLKQGFKPDVIVVDPPRTGCDDQLLHAI--VQSQA 403
Query: 399 RKAKSLSESSSSMVKE 414
++ +S + S++ K+
Sbjct: 404 KRLVYVSCNPSTLAKD 419
>gi|322420278|ref|YP_004199501.1| TrmA family RNA methyltransferase [Geobacter sp. M18]
gi|320126665|gb|ADW14225.1| RNA methyltransferase, TrmA family [Geobacter sp. M18]
Length = 566
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 156/309 (50%), Gaps = 27/309 (8%)
Query: 91 TFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQG 150
T S + G+R AKL V G + P+IG+Y+ TH+V++I C+ HHP IN V+ + G
Sbjct: 231 TIGSPKELGYRNTAKLVVAGKHSDPVIGIYRRNTHDVLEIGECQLHHPLINKVVKAAKAG 290
Query: 151 IKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSD 210
IK+ V+ Y+ G LRY+ + V P++ Q+ +V+ + ++ +
Sbjct: 291 IKKGKVQIYNPKSEMGLLRYLVVRVAE-----PSN--------QVMVVFVTTDQ---GYN 334
Query: 211 KLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDI 270
++ LA+F+ + + V N TST NVIFG++ R + +G
Sbjct: 335 EMHHLAKFIQQAVPE------VAVVAQNINTSTGNVIFGHKDRSITKAQTLKAFIGDRSF 388
Query: 271 SLAPSSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCV 328
+L+P SF Q N+ A I+ K+++ V D+Y G G G+SL A + R V +
Sbjct: 389 NLSPHSFFQVNSGAARIIYEKVRELARLTGKERVIDVYCGIG--GISLFLADQAREVVGI 446
Query: 329 EINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLV 388
E E+ ++ + L + + + +A + I+ + G+D++V++PPRKG D ++
Sbjct: 447 EF-VEAAVADATLNAALNLARNCHFEAGDAVHLIDEIGEEGGADLIVLNPPRKGCDEKVL 505
Query: 389 HALQSIGSA 397
++ +I A
Sbjct: 506 KSVAAIKPA 514
>gi|197119265|ref|YP_002139692.1| RNA methyltransferase, TrmA family [Geobacter bemidjiensis Bem]
gi|197088625|gb|ACH39896.1| RNA methyltransferase, TrmA family [Geobacter bemidjiensis Bem]
Length = 572
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 87/306 (28%), Positives = 148/306 (48%), Gaps = 27/306 (8%)
Query: 91 TFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQG 150
T S + G+R AKL + G + P+IG+Y+ TH+V+ I C HHP IN V+ + G
Sbjct: 238 TIGSPKELGYRNTAKLVIAGKNNDPVIGIYRRNTHDVLQIEDCALHHPLINKVVKAAKAG 297
Query: 151 IKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSD 210
IK+ V+ Y+ G LRY+ + V + +V + LV + +
Sbjct: 298 IKKGKVQIYNPKSEMGLLRYLVVRVAE-----------KTNQVMVVLVTTDQ-----GYN 341
Query: 211 KLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDI 270
++ LA+F+ + + V N TST NVIFG + R + VG
Sbjct: 342 EMHHLAKFIQQAVPE------VSVVAQNINTSTGNVIFGTKDRSITKAQTLKAFVGDKIF 395
Query: 271 SLAPSSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCV 328
+L+P SF Q N+ A I+ K+++ + V D+Y G G G+SL A + R V +
Sbjct: 396 NLSPHSFFQVNSGAARIIYEKVRELANLKGTERVIDVYCGIG--GISLYLADQAREVVGI 453
Query: 329 EINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLV 388
E E+ ++ + L + + +A + I+ + G+D++V++PPRKG D ++
Sbjct: 454 EF-VEAAVADATINAALNHVENCHFEAGDAVHLIDEIGEEGGADLIVLNPPRKGCDEKVL 512
Query: 389 HALQSI 394
++ +I
Sbjct: 513 RSVAAI 518
>gi|253699961|ref|YP_003021150.1| RNA methyltransferase, TrmA family [Geobacter sp. M21]
gi|251774811|gb|ACT17392.1| RNA methyltransferase, TrmA family [Geobacter sp. M21]
Length = 447
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 148/306 (48%), Gaps = 27/306 (8%)
Query: 91 TFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQG 150
T S + G+R AKL V G + P+IG+Y+ TH+V+ I C HHP IN V+ + G
Sbjct: 112 TIGSPKELGYRNTAKLVVAGKNNDPVIGIYRRNTHDVLQIEDCGLHHPLINKVVKAAKAG 171
Query: 151 IKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSD 210
IK+ V+ Y+ G LRY+ + V +E+ V + NE
Sbjct: 172 IKKGKVQIYNPKSEMGLLRYLVVRV---------AEKSNQAMVVLVTTDQGYNE------ 216
Query: 211 KLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDI 270
+ LA+F+ + + V N TST NVIFGN+ R + VG
Sbjct: 217 -MHHLAKFIQQAVPE------VAVVAQNINTSTGNVIFGNKDRSITKAQTLKAFVGDKIF 269
Query: 271 SLAPSSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCV 328
+L+P SF Q N+ A I+ K+++ + V D+Y G G G+SL A + R V +
Sbjct: 270 NLSPHSFFQVNSGAARIIYEKVRELANLKGTERVIDVYCGIG--GISLFLADQAREVVGI 327
Query: 329 EINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLV 388
E E+ ++ + L + + + +A + I+ + G++++V++PPRKG D ++
Sbjct: 328 EF-VEAAVADATINAALNRVENCHFEAGDAVHLIDEIGEEGGAELIVLNPPRKGCDEKVL 386
Query: 389 HALQSI 394
++ +I
Sbjct: 387 RSVAAI 392
>gi|51893956|ref|YP_076647.1| RNA methyltransferase [Symbiobacterium thermophilum IAM 14863]
gi|51857645|dbj|BAD41803.1| RNA methyltransferase [Symbiobacterium thermophilum IAM 14863]
Length = 459
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 105/389 (26%), Positives = 169/389 (43%), Gaps = 42/389 (10%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVDEATDFFKSIGL-LDFTFDSCRLYGWRCRAK 105
CP C GC + L R +VD + G+ + T +G+R +A+
Sbjct: 79 CPVVGKCGGCQLQHIAYEAQLGLKRQQVVDAVERLGRLSGVTVHPTLGMADPWGYRNKAQ 138
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
V S + G + G+H +VDI C HP N + +++ V YDE T
Sbjct: 139 FPVGRRSGRVIAGFFAPGSHRIVDIERCAIQHPLANRIMAEVKELAGRFGVPIYDERSHT 198
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGS 225
G LR+V +A T G+ LV N P+ + + +A L
Sbjct: 199 GVLRHV-LARVGRGT----------GEAMAVLVTNG-----PHLPRGKDIARELM----- 237
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
+R + SV N + NV+ G R L G + +G + S++P SF Q N
Sbjct: 238 -TRIPELVSVVQNINPARTNVVLGRESRVLAGRDAITDYIGDLQFSISPVSFFQVNPAQT 296
Query: 286 DILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
++L K +Y S V DLY G G I L LA R+CR V +E +E+ + +
Sbjct: 297 EVLYDKALEYAGLTGSETVIDLYCGIGTISLFLA--RRCREVVGIEWVEEAVADARENAA 354
Query: 344 RLPKSVDGNISWHNADNSIEP---LSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERK 400
R + GN+ + D ++E + V +DV+V+DPPRKG D ++ A+ + A R+
Sbjct: 355 R---NGIGNVRFIAGDAAVEMPRLAAEGVRADVIVLDPPRKGCDGPVLEAIAQV--APRR 409
Query: 401 AKSLSESSSSMVKEEKRPWILRAKEASVQ 429
+S + +S+ ++ R + + VQ
Sbjct: 410 VVYVSCNPASLARDLGRLAEMGYRTVEVQ 438
>gi|397574158|gb|EJK49064.1| hypothetical protein THAOC_32095 [Thalassiosira oceanica]
Length = 619
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 93/282 (32%), Positives = 128/282 (45%), Gaps = 44/282 (15%)
Query: 97 LYGWRCRAKLAVRGTST-----SPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGI 151
+ GWR +AKLAV ST IGLY+ G+H VV IP C AHHP IN AV+ + +
Sbjct: 175 IRGWRSQAKLAVSPASTWNRSSGCKIGLYRRGSHEVVPIPDCAAHHPAINRAVDAVMRAT 234
Query: 152 KELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDK 211
++ Y E G LRYVQ V GKV +TLV N+ K
Sbjct: 235 TKVRTPAYQEITGEGLLRYVQCQV-----------ELTTGKVCLTLVMNAEKFKDAQP-H 282
Query: 212 LESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFG---NRWRHLLGETDFWENVGGI 268
L L + L R HS+W + S N IF +RW G EN+ G
Sbjct: 283 LSYLVKEL-----KRRDPKLWHSIWCHCNDSGGNAIFARDVSRWHQTDGPPYVRENIPGS 337
Query: 269 D-------ISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLS------ 315
D + +P F QAN F + R++ + +P G+ V +LYAG G++GLS
Sbjct: 338 DPNEKEGLLYFSPLVFRQANLMGFHEIAREVCEAIPGGSKVCELYAGVGLLGLSALLHHG 397
Query: 316 -LAAAR-----KCRSVKCVEINKESQLSFEKTVSRLPKSVDG 351
LA A ++C + N + FE+ V+ +PK + G
Sbjct: 398 KLAGANGDGRLGLGFLRCSDENPSNVKCFERAVASMPKHITG 439
>gi|308802299|ref|XP_003078463.1| tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes
(ISS) [Ostreococcus tauri]
gi|116056915|emb|CAL53204.1| tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes
(ISS) [Ostreococcus tauri]
Length = 520
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 107/207 (51%), Gaps = 12/207 (5%)
Query: 191 GKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGN 250
+ I+LVWN+ S + ++E + + L R GG ++H VW N Q + N IF +
Sbjct: 263 ARASISLVWNA----SEMTKRVEDVCDDLARRGG----REFVHGVWVNLQDARTNTIFND 314
Query: 251 R-WRHLLGE-TDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAG 308
R W H+ GE G I P SF QAN A+ LL ++ ++VP GA +T++YAG
Sbjct: 315 RGWTHVRGERLTSLATPDGTPIYYLPGSFMQANAEAYGALLERMPRHVPRGARITEMYAG 374
Query: 309 AGVIGLSLA--AARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS 366
G IG SL A +S++CVE + + ++E+T LP V S +
Sbjct: 375 TGAIGFSLLMNAELDVQSLRCVESSSAVKEAWERTRDELPSGVKSKASLRVEKADRVVVE 434
Query: 367 WLVGSDVLVVDPPRKGLDSSLVHALQS 393
DVL+VDPPRKGL +++ AL S
Sbjct: 435 STKDCDVLIVDPPRKGLGATVRSALTS 461
Score = 38.1 bits (87), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 52 LQCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGT 111
+C C+GC P ++ +F + F S R WRC+AKLAVR
Sbjct: 29 FECASHPRCAGCARVDAPLDPEVLTRVRAYFGD-DHVTFRGSSTR---WRCKAKLAVRED 84
Query: 112 STSPLIGLYQEGTHN 126
+GL+ GTH+
Sbjct: 85 DHGVSLGLFARGTHD 99
>gi|167747772|ref|ZP_02419899.1| hypothetical protein ANACAC_02493 [Anaerostipes caccae DSM 14662]
gi|167653134|gb|EDR97263.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerostipes caccae
DSM 14662]
Length = 459
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 100/366 (27%), Positives = 162/366 (44%), Gaps = 55/366 (15%)
Query: 53 QCPHFQSCSGCT-----------HEFN-----LHRPIIVDEATDFFKSIGLLDFTFDSCR 96
+CP + C GCT ++FN L R ++ A F + I +D
Sbjct: 72 RCPSARPCGGCTLQHLSYEKQLEYKFNKVKNCLERIGGIENAGSFMEPIYGMD------E 125
Query: 97 LYGWRCRAKLAVRGTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELN 155
Y +R +A+ V LI G Y TH+++D HC HP ++ + ++ +
Sbjct: 126 PYYYRNKAQFPVGRNKAGKLITGFYAGRTHSIIDCTHCSIQHPVNEEILKKVLDYMERNH 185
Query: 156 VEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPN-SDKLES 214
VEPYDE + G +R++ V + G++ + LV N R ++ PN S+ +ES
Sbjct: 186 VEPYDEKNHRGLVRHIMTRVG-----------FVTGEIMVCLVVNGRKKELPNLSELVES 234
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
L E + S+ N N I G++ + G ++ +G + + P
Sbjct: 235 LKEV-----------EGMTSICVNSNRERTNRIMGSKVEEVYGPAYIYDYIGNVKYQIGP 283
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGASVT--DLYAGAGVIGLSLAAARKCRSVKCVEINK 332
SF Q N R +L K +Y T DLY G G I L L A+K + V VEI K
Sbjct: 284 LSFFQVNPRQTKVLYEKALEYAGLCGDETVWDLYCGIGTISLFL--AQKAKQVYGVEIVK 341
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVH 389
E+ + + +R+ + +D + + P + V +DV+VVDPPRKG D +L+
Sbjct: 342 EA-IEDARLNARMNR-MDNVKFFVGKAEEVLPREYEKNGVYADVIVVDPPRKGCDKALLD 399
Query: 390 ALQSIG 395
+ +G
Sbjct: 400 TMVKMG 405
>gi|223999803|ref|XP_002289574.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220974782|gb|EED93111.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 680
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 92/362 (25%), Positives = 147/362 (40%), Gaps = 77/362 (21%)
Query: 52 LQCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSCR--------------- 96
+ CPHF +C GC ++ + I++ A +F S + S +
Sbjct: 148 IDCPHFGTCPGCVVNEDITKIDIIESAKLYFSSSSIQKHVLSSTQRRNYKNDYSSGGGGY 207
Query: 97 -------LYG---------WRCRAKLAVRGTST-----SPLIGLYQEGTHNVVDIPHCKA 135
Y WR +AKLAV +ST +GLY+ +HNV+ IP C
Sbjct: 208 YDEEEEEFYKVVVPSSTTQWRTQAKLAVAPSSTWSRAQGCKLGLYERYSHNVLSIPDCAV 267
Query: 136 HHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQI 195
HHP IN AVE++ + K++ + ED G LRYVQ+ V GK+ +
Sbjct: 268 HHPSINRAVEMIVEATKKVRTPAFTEDTGEGLLRYVQLQV-----------ELSTGKICL 316
Query: 196 TLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIF---GNRW 252
TLV N+ K L L + L R ++ HS+W + S N IF + W
Sbjct: 317 TLVMNAEKLKECQP-HLSFLVKELKRMD---DKKEVWHSIWCHCNESKGNAIFSRDSSHW 372
Query: 253 RHLLGETDFWENVGGID-----------ISLAPSSFGQANTRAFDILLRKLQKYVPYGAS 301
L G E + G + + +P F Q N F + +++++ +P G+
Sbjct: 373 HPLEGPPYIREKIPGSNPNDDPEVKEGLLYFSPMVFRQGNLEGFGKIAKEVRESIPRGSK 432
Query: 302 VTDLYAG------------AGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSV 349
V +LYAG + ++C + N E++ FE+ V+ +P +
Sbjct: 433 VCELYAGVGLLGLSSLLYHGKLDEGGEDGEGGLPWLRCSDENPENERCFERAVNSMPMKI 492
Query: 350 DG 351
G
Sbjct: 493 TG 494
>gi|397646842|gb|EJK77450.1| hypothetical protein THAOC_00720, partial [Thalassiosira oceanica]
Length = 660
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 114/418 (27%), Positives = 171/418 (40%), Gaps = 103/418 (24%)
Query: 69 LHRPI---IVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPL-IGLYQEGT 124
L +P+ +V A F+++ F WR +KLAVR + IGL+ +
Sbjct: 209 LAKPLACPVVKSAKQFWRTTSYDGFKVYLGETQRWRTVSKLAVRPDEDGKVTIGLFAPNS 268
Query: 125 HNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY------DEDDR-TGDLRYVQMAVTT 177
H+V+ +P C+ HHP IN AVE++ + L+V PY DEDD+ +G LRYV + V
Sbjct: 269 HDVLPLPKCRMHHPSINKAVEVITKACHSLSVVPYREAGKSDEDDKGSGQLRYVAVNV-- 326
Query: 178 YNTSLPASERYRNGKVQITLVWNSRNEKSPNSD---------KLES-------------- 214
ER G QITLVWN +SP SD KL S
Sbjct: 327 --------ER-STGAAQITLVWN----ESPPSDGAIDNPLLRKLASKIVSSSTASSAEVE 373
Query: 215 ----------------LAEFLWRNGGSRSREHYIHSVWANFQTS--TNNVIFG---NRWR 253
L +GG ++ +HS+W N+ S +N +F W+
Sbjct: 374 EPPKKRRRGRRGGKTELKSTRANDGGKQTTTFKLHSLWINYHNSWKHSNAVFAFDSKCWK 433
Query: 254 HLLGETDFWENVG---------------------GIDISLAPSSFGQANTRAFDILLRKL 292
+ G + E++ + + P+ F QAN F ++ ++
Sbjct: 434 RVEGPSAVVEHLKFENARQLTNSDSLADPAPLDFKVPLHFPPNVFRQANLCFFTCIVARI 493
Query: 293 Q------KYVPYGASV-TDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRL 345
+ K G + T+LY G G IGL L+ + + N + F KTV
Sbjct: 494 RERTIKLKEDEVGDLICTELYGGVGTIGLHLSDL--VTYLVSSDENPNNNTCFTKTVREF 551
Query: 346 PKSVDGNISWHNADNSIEPLS---WLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERK 400
P V + + D + S L S VL+VDPPRKGLD +V + + G + K
Sbjct: 552 PPEVQSKLEYKRKDATAMVRSEKEMLSRSQVLIVDPPRKGLDEEVVDYICTGGHEQLK 609
>gi|386727175|ref|YP_006193501.1| RNA methyltransferase [Paenibacillus mucilaginosus K02]
gi|384094300|gb|AFH65736.1| RNA methyltransferase [Paenibacillus mucilaginosus K02]
Length = 442
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 100/366 (27%), Positives = 164/366 (44%), Gaps = 54/366 (14%)
Query: 54 CPHFQSCSGC-----THEFNLH--RPIIVDEATDF--FKSIGLLDFTFDSCRLYG----W 100
CP ++ C GC ++E + R +++D T + +G + G W
Sbjct: 48 CPIYKQCGGCQLQHLSYEAQMRWKRQLVIDNLTRIGKLQVVGEREEGIIVHPTLGMSDPW 107
Query: 101 RCRAK----LAVRGTSTSPLIG-LYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELN 155
R R K + + T L+G Y +G+H ++D+ C H +A V +++ +EL
Sbjct: 108 RYRNKAQVPIGLAETEEGGLVGGFYAQGSHRIIDMEACLIQHENNDAVVGAVKKIARELG 167
Query: 156 VEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESL 215
+ PY E+ G LR+V +A +NT G++ + LV N R+ P++D+L L
Sbjct: 168 IRPYSEETGRGLLRHV-IARYGFNT----------GEIMVVLVTNGRD--LPHADELTGL 214
Query: 216 AEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPS 275
R + S+ N T NVIFG+ R L G ++ +G I +++
Sbjct: 215 I---------RRDVPGVTSIVQNINTRETNVIFGDETRTLWGSDVIYDTIGDIRFAISAR 265
Query: 276 SFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
SF Q N ++L K +Y +V D Y G G I L L A+K V VEI E
Sbjct: 266 SFYQVNPVQTEVLYGKALEYAALTGRETVIDAYCGIGTISLFL--AQKADQVYGVEIVPE 323
Query: 334 SQLSFEKTVSRLPKSVDG--NISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLV 388
+ +R ++G N S+ + +W + DV+VVDPPRKG D +L+
Sbjct: 324 AIED-----ARANARLNGIRNASFEAGPAEVVIPAWRAKGIAPDVIVVDPPRKGCDPALL 378
Query: 389 HALQSI 394
+ ++
Sbjct: 379 ETILAM 384
>gi|379724436|ref|YP_005316567.1| RNA methyltransferase [Paenibacillus mucilaginosus 3016]
gi|378573108|gb|AFC33418.1| RNA methyltransferase [Paenibacillus mucilaginosus 3016]
Length = 501
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 101/366 (27%), Positives = 164/366 (44%), Gaps = 54/366 (14%)
Query: 54 CPHFQSCSGC-----THEFNLH--RPIIVDEATDFFK--SIGLLDFTFDSCRLYG----W 100
CP ++ C GC ++E + R +++D T K +G + G W
Sbjct: 107 CPIYKQCGGCQLQHLSYEAQMRWKRQLVIDNLTRIGKLQVVGEREEGIIVHPTLGMSDPW 166
Query: 101 RCRAK----LAVRGTSTSPLIG-LYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELN 155
R R K + + T L+G Y +G+H ++D+ C H +A V +++ +EL
Sbjct: 167 RYRNKAQVPIGLAETEEGGLVGGFYAQGSHRIIDMEACLIQHENNDAVVGAVKKIARELG 226
Query: 156 VEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESL 215
+ PY E+ G LR+V +A +NT G++ + LV N R+ P++D+L L
Sbjct: 227 IRPYSEETGRGLLRHV-IARYGFNT----------GEIMVVLVTNGRD--LPHADELTGL 273
Query: 216 AEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPS 275
R + S+ N T NVIFG+ R L G ++ +G I +++
Sbjct: 274 I---------RRDVPGVTSIVQNINTRETNVIFGDETRTLWGSDVIYDTIGDIRFAISAR 324
Query: 276 SFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
SF Q N ++L K +Y +V D Y G G I L L A+K V VEI E
Sbjct: 325 SFYQVNPVQTEVLYGKALEYAALTGRETVIDAYCGIGTISLFL--AQKADQVYGVEIVPE 382
Query: 334 SQLSFEKTVSRLPKSVDG--NISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLV 388
+ +R ++G N S+ + +W + DV+VVDPPRKG D +L+
Sbjct: 383 AIED-----ARANARLNGIRNASFEAGPAEVVIPAWRGKGIAPDVIVVDPPRKGCDPALL 437
Query: 389 HALQSI 394
+ ++
Sbjct: 438 ETILAM 443
>gi|227543796|ref|ZP_03973845.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri CF48-3A]
gi|338203587|ref|YP_004649732.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri
SD2112]
gi|227186223|gb|EEI66294.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri CF48-3A]
gi|336448827|gb|AEI57442.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri
SD2112]
Length = 468
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 97/364 (26%), Positives = 164/364 (45%), Gaps = 43/364 (11%)
Query: 65 HEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGLY 120
+ R +I+D + + F+ G ++ T + YG+R +A+ +R + GLY
Sbjct: 101 QQLKFKRQVIID-SLEKFQPYGYRNYDVRPTIAAPEEYGYRNKAQFQIRMVNGKVAAGLY 159
Query: 121 QEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNT 180
Q +H +VD+ C PR V + + I++L + YDE + +G ++
Sbjct: 160 QPNSHTLVDMETCAVQMPRTMETVRAVTKMIEDLQIPVYDEKNNSGIIK----------- 208
Query: 181 SLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQ 240
+L E + G+VQ+T + NS KL E L R + SV N
Sbjct: 209 TLAVRESWSTGEVQLTFI--------TNSAKLPHKRELLER---IEKELPAVVSVMQNVN 257
Query: 241 TSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGA 300
+I+G++ HL G+ E++ G+D L+ SF Q N ++L + K +
Sbjct: 258 PGDTPLIWGDKMIHLAGKDSILESLMGLDFKLSARSFLQLNPEQTEVLYEEASKALELDK 317
Query: 301 --SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNA 358
++ D YAG G IGLSLA+ + +SV +EI E+ + ++L + A
Sbjct: 318 DDTLIDAYAGIGTIGLSLAS--RVKSVCGMEIIPEAVADANEN-AKLNNITNAKYEVGKA 374
Query: 359 DNSI-----EPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVK 413
+ + E L++ D LVVDPPR GLD L+ Q + RK +S +S+ +
Sbjct: 375 EEVLPRWQEEGLNF----DALVVDPPRTGLDDQLIK--QILKVKPRKFAYVSCGMASLAR 428
Query: 414 EEKR 417
+R
Sbjct: 429 NLRR 432
>gi|194467488|ref|ZP_03073475.1| RNA methyltransferase, TrmA family [Lactobacillus reuteri 100-23]
gi|194454524|gb|EDX43421.1| RNA methyltransferase, TrmA family [Lactobacillus reuteri 100-23]
Length = 467
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 96/364 (26%), Positives = 163/364 (44%), Gaps = 43/364 (11%)
Query: 65 HEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGLY 120
+ R +I+D + + F+ G ++ T + YG+R +A+ VR + GLY
Sbjct: 101 QQLKFKRQVIID-SLEKFQPYGYRNYNVRPTIAAPEEYGYRNKAQFQVRMVNGKVAAGLY 159
Query: 121 QEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNT 180
Q +H +VD+ C PR V + + I++L + YDE +G ++
Sbjct: 160 QPNSHTLVDMETCAVQMPRTMETVRAVTKMIEDLQIPVYDEKHNSGIIK----------- 208
Query: 181 SLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQ 240
+L E + G+VQ+T + NS KL E L R + SV N
Sbjct: 209 TLAVQESWSTGEVQLTFI--------TNSAKLPHKRELLER---IEKELPAVVSVMQNVN 257
Query: 241 TSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGA 300
+++G + HL G+ E++ G+D L+ SF Q N ++L + K +
Sbjct: 258 PGDTPLVWGEKMIHLAGKDSILESLMGLDFKLSARSFLQLNPEQTEVLYEEASKALELDK 317
Query: 301 --SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNA 358
++ D YAG G IGLSLA+ + ++V+ +EI E+ + ++L + A
Sbjct: 318 DDTLIDAYAGIGTIGLSLAS--RVKAVRGMEIIPEAVADANEN-AKLNNIANAKYEVGKA 374
Query: 359 DNSI-----EPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVK 413
+ + E L++ D LVVDPPR GLD L+ Q + RK +S +S+ +
Sbjct: 375 EEVLPRWQKEGLNF----DALVVDPPRTGLDDQLIK--QILKVKPRKFAYVSCGMASLAR 428
Query: 414 EEKR 417
+R
Sbjct: 429 NLRR 432
>gi|337751469|ref|YP_004645631.1| RNA methyltransferase [Paenibacillus mucilaginosus KNP414]
gi|336302658|gb|AEI45761.1| Uncharacterized RNA methyltransferase [Paenibacillus mucilaginosus
KNP414]
Length = 442
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 100/366 (27%), Positives = 164/366 (44%), Gaps = 54/366 (14%)
Query: 54 CPHFQSCSGC-----THEFNLH--RPIIVDEATDF--FKSIGLLDFTFDSCRLYG----W 100
CP ++ C GC ++E + R +++D T + +G + G W
Sbjct: 48 CPIYKQCGGCQLQHLSYEAQMRWKRQLVIDNLTRIGKLQVVGEREEGIIVHPTLGMSDPW 107
Query: 101 RCRAK----LAVRGTSTSPLIG-LYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELN 155
R R K + + T L+G Y +G+H ++D+ C H +A V +++ +EL
Sbjct: 108 RYRNKAQVPIGLAETEEGGLVGGFYAQGSHRIIDMEACLIQHENNDAVVGAVKKIARELG 167
Query: 156 VEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESL 215
+ PY E+ G LR+V +A +NT G++ + LV N R+ P++D+L L
Sbjct: 168 IRPYSEETGRGLLRHV-IARYGFNT----------GEIMVVLVTNGRD--LPHADELTGL 214
Query: 216 AEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPS 275
R + S+ N T NVIFG+ R L G ++ +G I +++
Sbjct: 215 I---------RRDVPGVTSIVQNINTRETNVIFGDETRTLWGSDVIYDTIGDIRFAISAR 265
Query: 276 SFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
SF Q N ++L K +Y +V D Y G G I L L A+K V VEI E
Sbjct: 266 SFYQVNPVQTEVLYGKALEYAALTGRETVIDAYCGIGTISLFL--AQKADRVYGVEIVPE 323
Query: 334 SQLSFEKTVSRLPKSVDG--NISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLV 388
+ +R ++G N S+ + +W + DV+VVDPPRKG D +L+
Sbjct: 324 AIED-----ARANARLNGIRNASFEAGPAEVVIPAWRGKGIAPDVIVVDPPRKGCDPALL 378
Query: 389 HALQSI 394
+ ++
Sbjct: 379 ETILAM 384
>gi|148543331|ref|YP_001270701.1| RNA methyltransferase [Lactobacillus reuteri DSM 20016]
gi|184152739|ref|YP_001841080.1| RNA methyltransferase [Lactobacillus reuteri JCM 1112]
gi|227364399|ref|ZP_03848491.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri MM2-3]
gi|325683598|ref|ZP_08163114.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri
MM4-1A]
gi|148530365|gb|ABQ82364.1| 23S rRNA m(5)U-1939 methyltransferase [Lactobacillus reuteri DSM
20016]
gi|183224083|dbj|BAG24600.1| RNA methyltransferase [Lactobacillus reuteri JCM 1112]
gi|227070585|gb|EEI08916.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri MM2-3]
gi|324977948|gb|EGC14899.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri
MM4-1A]
Length = 468
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 96/364 (26%), Positives = 164/364 (45%), Gaps = 43/364 (11%)
Query: 65 HEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGLY 120
+ R +I+D + + F+ G ++ T + YG+R +A+ VR + GLY
Sbjct: 101 QQLKFKRQVIID-SLEKFQPYGYRNYDVRPTIAAPEEYGYRNKAQFQVRMVNGKVAAGLY 159
Query: 121 QEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNT 180
Q +H +VD+ C PR V + + I++L + YDE +G ++
Sbjct: 160 QPNSHTLVDMETCAVQMPRTMETVRAVTKMIEDLQIPVYDEKHNSGIVK----------- 208
Query: 181 SLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQ 240
+L E + G+VQ+T + NS KL E L R + SV N
Sbjct: 209 TLAVRESWSTGEVQLTFI--------TNSAKLPHKRELLER---IEKELPAVVSVMQNVN 257
Query: 241 TSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGA 300
+++G++ HL G+ E++ G+D L+ SF Q N ++L + K +
Sbjct: 258 PGDTPLVWGDKMIHLAGKDSILESLMGLDFKLSARSFLQLNPEQTEVLYEEASKALELDQ 317
Query: 301 --SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNA 358
++ D YAG G IGLSLA+ + ++V+ +EI E+ + ++L + A
Sbjct: 318 DDTLIDAYAGIGTIGLSLAS--RVKAVRGMEIIPEAVADANEN-AKLNNITNAKYEVGKA 374
Query: 359 DNSI-----EPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVK 413
+ + E L++ D LVVDPPR GLD L+ Q + RK +S +S+ +
Sbjct: 375 EEVLPRWQKEGLNF----DALVVDPPRTGLDDQLIK--QILKVKPRKFAYVSCGMASLAR 428
Query: 414 EEKR 417
+R
Sbjct: 429 NLRR 432
>gi|205372478|ref|ZP_03225291.1| RNA methyltransferase-like protein [Bacillus coahuilensis m4-4]
Length = 456
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 95/358 (26%), Positives = 160/358 (44%), Gaps = 48/358 (13%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIVDEAT---DFFKSIGLLD-------FTFDSCRLYGWRCR 103
CP + C GC + + + + D + IG + D WR R
Sbjct: 77 CPIYSECGGCQIQHMDYEGQLKSKGKHVKDVMERIGKIQNVPVHPVLGMDDP----WRYR 132
Query: 104 AKLAV-RGTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDE 161
K V G L+ G + +G+H +VD+P+C H + + V+L++ K+ ++PYDE
Sbjct: 133 NKAQVPVGMRQGELVAGFFAKGSHEIVDMPYCIIQHKKNDEVVQLVKDSFKKYGIQPYDE 192
Query: 162 DDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
+ G +R+V M T + T G+V + LV ++ K P +L + + + +
Sbjct: 193 EKHQGVVRHV-MVRTGHKT----------GEVMVVLV--TKTSKLPFKQQL--VEDLVHQ 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
G +S H N + NVI G R L GE ++ +G + +++P SF Q N
Sbjct: 238 VEGLKSIAH-------NINSKRTNVIMGEETRILWGERYIYDYIGDVRFAISPRSFYQVN 290
Query: 282 TRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L K ++ +V D Y G G I L L A + + V VEI E+ + +
Sbjct: 291 PEQTKVLYDKALEFAGLTGNETVIDAYCGIGTISLFL--AERAKHVYGVEIVPEAIVDAK 348
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+ + L + A++ I +W + +DVLVVDPPRKG D L+ ++ +
Sbjct: 349 RN-AELNGFTNVEFEVGPAEDVIP--AWYDRGIKADVLVVDPPRKGCDEKLLDTIKKM 403
>gi|404330698|ref|ZP_10971146.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Sporolactobacillus
vineae DSM 21990 = SL153]
Length = 457
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 98/375 (26%), Positives = 160/375 (42%), Gaps = 68/375 (18%)
Query: 47 SLTCALQCPHFQSCSGCT-------HEFNLHRPIIVD--EATDFFKSIGLLDFTFDSCRL 97
SL CP + C GC+ + + R I+ D E F I + T
Sbjct: 69 SLRAVPPCPIYDQCGGCSIQHLSAQGQLDYKRRIVTDALERIGGFSGISV-GMTIGMADP 127
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+ +R + ++ V G +++ +H +V++ C P I+ V+ R ++ +E
Sbjct: 128 WKYRNKIQVPVAAQDGRFAFGFFKKRSHEIVNLDSCIITDPLIDKIVQTARHAAEDKGIE 187
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
PY+E +G LR++ A ++G+V + V +R E P+ L + E
Sbjct: 188 PYNEAKNSGVLRHIM-----------ARSGRKSGEVMVVFV--TRTEDLPHRKAL--IKE 232
Query: 218 FLWRNGGSRSREHY--IHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPS 275
E+Y I S+ N N I GN+ + L G ++ +G + +++
Sbjct: 233 LT---------ENYPQIKSIVQNVNKRRTNAILGNKTKTLWGRPVIYDQIGSVTFAISAQ 283
Query: 276 SFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLA-AARKCRSVKCV---- 328
SF Q N R ++L RK K+ +V D Y G G I L LA A++ V+ V
Sbjct: 284 SFYQVNPRQTEVLYRKALKFADLTGEETVIDAYCGIGTISLFLAQKAKQVYGVEIVPEAV 343
Query: 329 -------EINKESQLSFE--KTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPP 379
E+NK + FE K LPK W+ D I P DV+VVDPP
Sbjct: 344 KDAQANAELNKITNAHFETGKAEEILPK-------WY--DKGIRP-------DVIVVDPP 387
Query: 380 RKGLDSSLVHALQSI 394
RKG ++SL+ + ++
Sbjct: 388 RKGCEASLLKTMLAM 402
>gi|423335144|ref|ZP_17312922.1| RNA methyltransferase [Lactobacillus reuteri ATCC 53608]
gi|337728665|emb|CCC03777.1| RNA methyltransferase [Lactobacillus reuteri ATCC 53608]
Length = 467
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 95/364 (26%), Positives = 163/364 (44%), Gaps = 43/364 (11%)
Query: 65 HEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGLY 120
+ R +I+D + + F+ G ++ T + YG+R +A+ +R + GLY
Sbjct: 101 QQLKFKRQVIID-SLEKFQPYGYRNYDVRPTIAAPEEYGYRNKAQFQIRMVNGKVAAGLY 159
Query: 121 QEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNT 180
Q +H +VD+ C PR V + + I++L + YDE +G ++
Sbjct: 160 QPNSHTLVDMETCAVQMPRTMETVRAVTKMIEDLQIPVYDEKHNSGIIK----------- 208
Query: 181 SLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQ 240
+L E + G+VQ+T + NS KL E L R + SV N
Sbjct: 209 TLAVRESWSTGEVQLTFI--------TNSAKLPHKRELLER---IEKELPAVVSVMQNVN 257
Query: 241 TSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGA 300
+++G + HL G+ E++ G+D L+ SF Q N ++L + K +
Sbjct: 258 PGDTPLVWGKKMIHLAGKDSILESLMGLDFKLSARSFLQLNPEQTEVLYEEASKALELDK 317
Query: 301 --SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNA 358
++ D YAG G IGLSLA+ + ++V+ +EI E+ + ++L + A
Sbjct: 318 DDTLIDAYAGIGTIGLSLAS--RVKAVRGMEIIPEAVADANEN-AKLNNIANAKYEVGKA 374
Query: 359 DNSI-----EPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVK 413
+ + E L++ D LVVDPPR GLD L+ Q + RK +S +S+ +
Sbjct: 375 EEVLPRWQKEGLNF----DALVVDPPRTGLDDQLIK--QILKVKPRKFAYVSCGMASLAR 428
Query: 414 EEKR 417
+R
Sbjct: 429 NLRR 432
>gi|302390099|ref|YP_003825920.1| 23S rRNA m(5)U-1939 methyltransferase [Thermosediminibacter oceani
DSM 16646]
gi|302200727|gb|ADL08297.1| 23S rRNA m(5)U-1939 methyltransferase [Thermosediminibacter oceani
DSM 16646]
Length = 450
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/349 (26%), Positives = 153/349 (43%), Gaps = 37/349 (10%)
Query: 53 QCPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDFT-FDSCRL---YGWRCRAK 105
+CPH C GC+ + + + D + IG + T FD+ + + +R +A+
Sbjct: 71 RCPHADECGGCSLQHLSYKGQLEFKTQKVRDSLERIGRIYTTVFDTIGMEDPWKYRNKAQ 130
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
V P +G Y + +H++V I C H A E++R +++ V YDE +
Sbjct: 131 YPVGKKDYRPALGFYMKRSHDLVPIEGCLIQHELSWRAAEVVRDWMEKFRVSIYDEINHK 190
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGS 225
G +R+V + + G+V + LV N R ++ L E L G
Sbjct: 191 GLIRHVVTRIGA-----------KTGEVMVVLVINGR--------EVPHLRELL---GAL 228
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
+ SV+ N T NVI G+ + GE + +G I +L+P+SF Q N
Sbjct: 229 EKNVEGLKSVYLNVNTKKTNVIMGDENILVYGEPHIIDFIGEIKFTLSPNSFFQVNPVQV 288
Query: 286 DILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
++L +K+ +Y +V D Y G G I L LA K R V +E+ ++ +
Sbjct: 289 EVLYKKVMEYAGLTGEETVIDAYCGIGTITLFLAG--KARMVYGIEVVPQAVMDARNNA- 345
Query: 344 RLPKSVDGNISWHNADNSIEP--LSWLVGSDVLVVDPPRKGLDSSLVHA 390
L ++ A + P + + +DV+V+DPPR+G D L+ A
Sbjct: 346 -LLNGIENVEFIEGAAEEVMPQLVERGIRADVIVMDPPRRGCDEKLLDA 393
>gi|377830921|ref|ZP_09813911.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus mucosae LM1]
gi|377555205|gb|EHT16894.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus mucosae LM1]
Length = 475
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 107/398 (26%), Positives = 174/398 (43%), Gaps = 72/398 (18%)
Query: 46 PSLTCALQCPHFQ-SCSGCTHEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGW 100
P + A Q F+ C + R +++D F K G ++ T + YG+
Sbjct: 93 PRDSYADQAGGFEFECLAYPEQLKFKRQVVLDSLAKF-KPRGWQNYDVRPTIAAPEQYGY 151
Query: 101 RCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYD 160
R +A+ VR + GLY+ +H+VVD+P C P A+ + + + EL + YD
Sbjct: 152 RNKAQFQVREQDGHLVAGLYRANSHDVVDMPTCAVQMPGTMKAMRAIVKMLDELKIPAYD 211
Query: 161 EDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRN--EKSPNSDKLESLAEF 218
E +G ++ + + E G++Q+TL+ N+ K P L +AE
Sbjct: 212 ETSNSGIIKTIAI-----------RESLATGELQVTLITNTAKLIHKGP---LLAMIAEQ 257
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
L + SV N +++G + HL G+ E++ G+D L+ SF
Sbjct: 258 LPE----------VKSVEQNVNPGDTPLVWGEQTIHLAGQEYITESLMGLDFHLSARSFL 307
Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q N + L + K + G + D YAG G IGLSLA+ + +SV+ +E+
Sbjct: 308 QLNPAQTETLYEQAAKAMELGPDDVLVDAYAGIGTIGLSLAS--RVKSVRGMEV------ 359
Query: 337 SFEKTVSRLPKSV-DGNISWHNAD-NSIEPLSWLVGS---------------DVLVVDPP 379
+P++V D N NA N I+ S+ VG+ + LVVDPP
Sbjct: 360 --------IPEAVADAN---SNAKLNDIQNASYEVGTAEEVMPRWQAEGFRFNALVVDPP 408
Query: 380 RKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKR 417
R GLD +L+ Q + + K +S + S+M K R
Sbjct: 409 RTGLDEALIE--QILKAKPAKFAYVSCNMSTMAKNLAR 444
>gi|15613250|ref|NP_241553.1| RNA methyltransferase [Bacillus halodurans C-125]
gi|50401684|sp|Q9KF10.1|Y687_BACHD RecName: Full=Uncharacterized RNA methyltransferase BH0687
gi|10173301|dbj|BAB04406.1| RNA methyltransferase [Bacillus halodurans C-125]
Length = 458
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/351 (25%), Positives = 156/351 (44%), Gaps = 40/351 (11%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDF-----TFDSCRLYGWRCRAK 105
CP F C GC + ++ + D + IG + T + +R +A+
Sbjct: 78 CPVFNQCGGCQLQHMSYDAQLRYKQKQVQDVLERIGKITAVTVRPTIGMNEPWRYRNKAQ 137
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
+ V + G YQE +H ++D+ C H + + +++ +EL + YDE+
Sbjct: 138 VPVGEREGGLIAGFYQERSHRIIDMDECMIQHEENDKVIRQVKELARELGIRGYDEEKHR 197
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRNGG 224
G LR+V RY +I +V +R E+ P+ L E + + +
Sbjct: 198 GTLRHV-------------VARYGKNTGEIMVVLITRGEELPHKKTLIERIHKAI----- 239
Query: 225 SRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRA 284
++ S+ N NVIFG++ + L GE ++ +G I +++ SF Q N
Sbjct: 240 -----PHVKSIVQNVNPKRTNVIFGDKTKVLWGEEYIYDTIGDIKFAISARSFYQVNPEQ 294
Query: 285 FDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTV 342
+L + ++ S V D Y G G I L L A++ + V VEI E+ +S K
Sbjct: 295 TKVLYDQALEFANLTGSETVIDAYCGIGTISLFL--AQQAKHVYGVEIVPEA-ISDAKRN 351
Query: 343 SRLPKSVDGNISWHNADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHAL 391
+RL + + +A+ + P + G +DV+VVDPPRKG D +L+ +
Sbjct: 352 ARLNGFANVQFAVGDAE-KVMPWWYAQGVRADVIVVDPPRKGCDEALLKTI 401
>gi|39996552|ref|NP_952503.1| TrmA family RNA methyltransferase [Geobacter sulfurreducens PCA]
gi|409911975|ref|YP_006890440.1| TrmA family RNA methyltransferase [Geobacter sulfurreducens KN400]
gi|51316711|sp|Q74D67.1|Y1452_GEOSL RecName: Full=Uncharacterized RNA methyltransferase GSU1452
gi|39983433|gb|AAR34826.1| RNA methyltransferase, TrmA family [Geobacter sulfurreducens PCA]
gi|307634847|gb|ADI84291.2| RNA methyltransferase, TrmA family [Geobacter sulfurreducens KN400]
Length = 495
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 101/359 (28%), Positives = 167/359 (46%), Gaps = 44/359 (12%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIVDEATDF-------FKSIGLLDF--TFDSCRLYGWRCRA 104
C SC GC +H P ++ F ++++G + T S +R A
Sbjct: 88 CKRAGSCDGCP-LIVMHYPDQLNWKRTFTERQIRRYQTLGAAEVLATLPSPNQLHYRNSA 146
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
KL V GT P+IG+Y+ +H V+DI C HHP IN V +++GI + V+ Y+
Sbjct: 147 KLVVSGTFRRPVIGIYRRNSHQVMDIGTCPLHHPLINRVVTAVKEGIAKCKVQVYNPRTG 206
Query: 165 TGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGG 224
+G LRY+ + ++ R G V R N +++ LA+ L ++
Sbjct: 207 SGLLRYLVVRISE-----------RTGTAMAVFVTVER-----NYNEIHHLAKHLQQSVP 250
Query: 225 SRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRA 284
V N +S NVI G R L + E +GGI +++P SF Q N+
Sbjct: 251 QVE------VVVQNVNSSEGNVILGQRDYFLTRQHALTEELGGIRFTISPRSFFQVNSGG 304
Query: 285 FDILLRKLQKY--VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTV 342
I+ ++++ + SV DLY G G I L LA R V +E+ E+ ++ ++
Sbjct: 305 ARIIYETVRQWSSLTGKESVVDLYCGIGGIALFLAGT--AREVHGIEV-VEAAVNDAESN 361
Query: 343 SRLPKSVDGNISWHNADNSIEPLSWLVGS----DVLVVDPPRKGLDSSLVHALQSIGSA 397
+RL + N S+ D + E + LV D++V++PPRKG D+ +++ + + G A
Sbjct: 362 ARLNRI--HNCSFEAGD-AAELIEELVEEGERLDLVVLNPPRKGCDAGVLNKVAAAGPA 417
>gi|366165874|ref|ZP_09465629.1| RNA methyltransferase [Acetivibrio cellulolyticus CD2]
Length = 552
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 97/356 (27%), Positives = 159/356 (44%), Gaps = 44/356 (12%)
Query: 54 CPHFQSCSGCTHEFNLHRPII---VDEATDFFKSIGLLD--FTFDSCRL---YGWRCRAK 105
C + C GC+ + + + + T+ + IG L D+ + +R +A+
Sbjct: 80 CEVYNRCGGCSLQHMSTQAALRFKTELVTENIRRIGKLQDVIVHDTIGMQKPLNYRNKAQ 139
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
V + +G Y + +H+++D P C H + A ++++ +KE N+ YDE
Sbjct: 140 YPVGKLNDELKVGFYAKKSHDIIDSPICMIQHSVSDRAKLIVKEFLKENNISVYDETTGK 199
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGS 225
G +R+V M T +NT G++ I LV N ++ P DKL L
Sbjct: 200 GLVRHV-MTRTGFNT----------GEIMIVLVLNGKS--LPEQDKLVKLL--------- 237
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
I S+ N T N+I G R + GE + +G ++P SF Q N
Sbjct: 238 TGELPEIKSIILNINTMNTNIILGTRNIVIFGEETITDYIGKFKFKISPLSFFQVNPVQT 297
Query: 286 DILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
++L K +Y +V DLY G G I L L + K + V VE+ +E+ +
Sbjct: 298 EVLYNKALEYAGLTGQETVFDLYCGIGTISLFL--SEKTKKVYGVEVVEEAVRD-----A 350
Query: 344 RLPKSVDG--NISWH--NADNSI-EPLSWLVGSDVLVVDPPRKGLDSSLVHALQSI 394
++ V+G N+ + A+ I E S + +DV+VVDPPRKG D L+ L S+
Sbjct: 351 KVNAGVNGVENVEFFVGEAERVIPEMYSKGIKADVVVVDPPRKGCDQVLLETLVSM 406
>gi|291543770|emb|CBL16879.1| 23S rRNA m(5)U-1939 methyltransferase [Ruminococcus champanellensis
18P13]
Length = 451
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 99/367 (26%), Positives = 158/367 (43%), Gaps = 73/367 (19%)
Query: 54 CPHFQSCSGCTH-------EFNLHRPIIVDEATDFFKSIGLLDFTFD---SCRL-YGWRC 102
CP + SC GC E N+ + ++ D F IG L F C G+R
Sbjct: 72 CPVYASCGGCAFRHMTYQAECNVKQQVV----EDAFVRIGGLHPVFLPILGCDTPIGYRN 127
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A+ V + + G Y + +H +V HC P +E + I++ ++PYDE
Sbjct: 128 KAQYPVGMQNGQAVCGFYAKRSHRIVPYTHCALQPPLFGEILEAALEHIRQQGLQPYDEQ 187
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
TG LR++ + + Y +G+V + V P ++L L++ L
Sbjct: 188 RGTGLLRHLYL-----------RQGYHSGEVMLCFVVT-----RPAREQLMPLSQQL--- 228
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ R + S+ N + NVI G R LLG+ + + GI + L+P +F Q NT
Sbjct: 229 ---QHRFPQLTSICMNVNPARTNVILGKRTETLLGQAAIRDTMCGIRVELSPHAFYQVNT 285
Query: 283 RAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+ L +++ S+ DLY G G IGLS+A K + VE+
Sbjct: 286 AQAERLYGIAREFAQLDGRQSLLDLYCGTGTIGLSMADGVK--HLTGVEV---------- 333
Query: 341 TVSRLPKSVDGNISWHNA-DNSIEPLSWLVGS---------------DVLVVDPPRKGLD 384
+P++V+ I NA +N IE + VG DV+V+DPPRKG D
Sbjct: 334 ----IPQAVENAI--RNARENRIENADFHVGDAAQWAQQLAQRGEHPDVIVLDPPRKGCD 387
Query: 385 SSLVHAL 391
+ + A+
Sbjct: 388 AQTLEAV 394
>gi|206901370|ref|YP_002250424.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dictyoglomus
thermophilum H-6-12]
gi|206740473|gb|ACI19531.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dictyoglomus
thermophilum H-6-12]
Length = 448
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 93/355 (26%), Positives = 157/355 (44%), Gaps = 43/355 (12%)
Query: 50 CALQCPHFQSCSGC-----THEFNLH-RPIIVDEATDFFKSIGLLDFTFDSC----RLYG 99
C C F C GC +E+ L + ++V++A FK IG ++ + Y
Sbjct: 68 CDPVCEVFYECGGCHLMHVNYEYQLELKKMMVEDA---FKRIGKIEKEVNPVIGMENPYR 124
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +AK+ V ++G Y+ TH +VDI C HH + +E ++ IK+ ++E Y
Sbjct: 125 YRNKAKIPVGKRRGKIVLGFYKPNTHYIVDINKCIVHHEDTDKVIETTKEAIKKFHIEVY 184
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
+E TG LR+V + + + + LV + N+ K+ ++
Sbjct: 185 NELQHTGLLRFVVV-----------RRSFAFDDLMVILVSKGMID---NAKKVARFYKYK 230
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+N + S + N N IFG R +LG+ + +G ++P SF Q
Sbjct: 231 LKN---------LKSFYVNINPKRTNEIFGEESRLILGDETIRDKIGDFVFEISPVSFFQ 281
Query: 280 ANTRAFDILLRKLQKYV-PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSF 338
N+ + L K +Y+ P V D Y G G I L L ++K V +E+ + +
Sbjct: 282 INSIQTEKLYNKALEYLSPNSRLVFDAYCGIGTISLFL--SKKAEKVYGIEVERTAIEDA 339
Query: 339 EKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS--DVLVVDPPRKGLDSSLVHAL 391
K +RL K + W ++ I P G D +V+DPPRKG D +L+ ++
Sbjct: 340 WKN-ARLNKVKNVEFIWGRSEEVI-PRLIEDGKIPDAVVLDPPRKGCDQNLLESI 392
>gi|374709061|ref|ZP_09713495.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Sporolactobacillus
inulinus CASD]
Length = 457
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 101/361 (27%), Positives = 150/361 (41%), Gaps = 60/361 (16%)
Query: 54 CPHFQSCSGCTHEFN------LHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLA 107
CP++ C GC+ + ++ IV A + + + WR R K+
Sbjct: 78 CPYYPQCGGCSIQHISAAGQLAYKREIVQSALERIGGLSAIPVEPTLGMDEPWRYRNKIQ 137
Query: 108 V--RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
V + G Y+ +H +V + HC I+ V+ R+ +E ++ PYDE
Sbjct: 138 VPVAIQNGKFAFGFYKTRSHEIVTMDHCMITDSPIDEIVQSARKIAEEHHIMPYDETKHR 197
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRNGG 224
G LR+V V + G+V + V +R E+ P+ L ++L E
Sbjct: 198 GVLRHVMARVGK-----------KTGEVMVVFV--TRGEELPHRKTLIKALTE------- 237
Query: 225 SRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRA 284
R I S+ N T N IFGN + L G ++ +G + +++ SF Q N
Sbjct: 238 ---RYPQIKSIAQNINTKRTNAIFGNETKTLWGRDTIYDQIGDVTFAISARSFFQVNPTQ 294
Query: 285 FDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAA-ARKCRSVKCV-----------EI 330
D+L K +Y V D Y G G I L LA A+ V+ V EI
Sbjct: 295 TDVLYGKALEYAGLTGKEMVIDAYCGIGTISLFLAKQAKHVYGVEIVPEAIEDARKNAEI 354
Query: 331 NKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHA 390
NK + +FE KS D W D IEP DV+VVDPPRKG D+SL+
Sbjct: 355 NKITNATFEAG-----KSEDVIPKWR--DQGIEP-------DVIVVDPPRKGCDASLIDT 400
Query: 391 L 391
+
Sbjct: 401 M 401
>gi|404494023|ref|YP_006718129.1| TrmA family RNA methyltransferase [Pelobacter carbinolicus DSM
2380]
gi|77546046|gb|ABA89608.1| RNA methyltransferase, TrmA family [Pelobacter carbinolicus DSM
2380]
Length = 489
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 94/353 (26%), Positives = 168/353 (47%), Gaps = 38/353 (10%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVDEATDFFKSIGLLDFT--FDSCRLYGWRCRA 104
CP + C GC+ + + + V EA + + + D + + G+R A
Sbjct: 104 CPSLRDCQGCSLMSMGYADQLDFKQ-TKVREALNAYPQLKGTDISPILAAEEPLGYRTSA 162
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
KLAV + +IGLY+ G+H V DI C HHP +N VE++R+ I ++ Y+ R
Sbjct: 163 KLAVARRNGRIVIGLYRRGSHEVADIGACPLHHPLVNRIVEVVREEIARQDIYLYNPVTR 222
Query: 165 TGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGG 224
G LRY+ + V+ PA+ GK +T V R K ++ +LA+++ R
Sbjct: 223 RGLLRYLLIKVS------PAT-----GKAMVTFVTAQREYK-----RITALAKWVAR--- 263
Query: 225 SRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN-TR 283
+ + SV N S+ NVI G ++G+ D ++ VG I + ++P+SF Q N +
Sbjct: 264 ---KIPEVVSVQQNVNASSGNVIMGRETLRMVGQPDLFDQVGNIRLRISPTSFFQVNHAQ 320
Query: 284 AFDI--LLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
A I L+R+ + ++ DLY G G G++L A+ V VE+ +++ + ++
Sbjct: 321 AARIYALVRRWAALESHEFAL-DLYCGIG--GIALHLAQDAGRVIGVEMVEDAVRNAQQN 377
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSI 394
+ + ++ A+ + + L V++PPR G D ++ A+ +
Sbjct: 378 AAMNNLANCRFLAGDTAELLQDLIVDLPSLATAVLNPPRSGCDVEVLQAVTQL 430
>gi|397905381|ref|ZP_10506237.1| RNA methyltransferase, TrmA family [Caloramator australicus RC3]
gi|397161446|emb|CCJ33571.1| RNA methyltransferase, TrmA family [Caloramator australicus RC3]
Length = 481
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 93/365 (25%), Positives = 155/365 (42%), Gaps = 68/365 (18%)
Query: 54 CPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDF-----TFDSCRLYGWRCR 103
CP ++SC GC T+E L + D IG + T + +R +
Sbjct: 99 CPIYESCGGCQIQHMTYEGQLEFK--RERVEDVINRIGKITNVKIHNTIGMEKPLRYRNK 156
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
+L VR + IG +++GTH+V+D+ C + V L R+ I + N+EPYDE +
Sbjct: 157 VQLPVRRENGEVKIGFFKQGTHDVIDVRECFIQDEIADKVVNLTREWINKYNIEPYDETN 216
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNG 223
+G +R++ + + + G+V + +V N EK P E + + +N
Sbjct: 217 GSGIVRHIMI-----------RKAFATGEVMVVIVTNG--EKLPFK---EEFIDLMVKNI 260
Query: 224 GSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTR 283
+ S+ N + NVI G + L G+ + +G ++ SF Q N
Sbjct: 261 DG------LKSIVQNINSKITNVILGEKNILLWGQDYITDYIGKFKFRISQLSFFQVNPV 314
Query: 284 AFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
++L K +Y V D Y G G I L L A++ + V VEI +E+
Sbjct: 315 QTNVLYNKALEYANLSGDEIVFDAYCGTGTISLFL--AQRAKKVYGVEIVEEAI------ 366
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPPRKGLDSS 386
N + +N ++ + ++VG DV+VVDPPRKG D
Sbjct: 367 ---------KNARENARENDMQNVEFIVGKSEEVIPKLIEKGIIPDVVVVDPPRKGCDER 417
Query: 387 LVHAL 391
L+H++
Sbjct: 418 LLHSI 422
>gi|399046730|ref|ZP_10738995.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Brevibacillus sp.
CF112]
gi|398055288|gb|EJL47370.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Brevibacillus sp.
CF112]
Length = 464
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 89/354 (25%), Positives = 154/354 (43%), Gaps = 40/354 (11%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVDEATDFFK-SIGLLDFTFDSCRLYGWRCRAK 105
CP ++ C GC+ + + I+++ + + S + T + +R +A+
Sbjct: 82 CPVYKECGGCSLQHMDYAAQLASKQEIVIESLRKYARLSDPPVAPTIGMDNPWSYRNKAQ 141
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
V + + GLYQ G+H +VD+ C+ H V+ +Q I+EL + YDE RT
Sbjct: 142 FQVGKQNGKLIAGLYQTGSHKLVDLEGCQVQHEATTKIVQAAKQIIEELGIPVYDERKRT 201
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGS 225
G +R + V + G+ Q+TLV ++ ++ + E +
Sbjct: 202 GVIRTIVARVA-----------FATGETQLTLVTATK--------EIPRVKELILE---L 239
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
R+R + S+ N +++FG++ L G E +G + L+ +F Q N
Sbjct: 240 RTRLPELVSIAQNVNPQKTSLVFGDQTFSLWGRPSIAEKLGELSFDLSARAFFQLNPEQT 299
Query: 286 DILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
L +++K V DLY G G IGL LA R V+ +E+ E+ + +
Sbjct: 300 QKLYDQVKKAAALTGKELVLDLYCGTGTIGLWLAP--HAREVRGIELIPEAVEDANRNAA 357
Query: 344 RLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
R + N S+H + W DV+VVDPPR GLD +L+ +L +
Sbjct: 358 RNQAT---NASFHVGRAEVLMPKWAKQGTRPDVVVVDPPRTGLDDALIRSLLDV 408
>gi|373857876|ref|ZP_09600616.1| RNA methyltransferase, TrmA family [Bacillus sp. 1NLA3E]
gi|372452547|gb|EHP26018.1| RNA methyltransferase, TrmA family [Bacillus sp. 1NLA3E]
Length = 457
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 97/352 (27%), Positives = 152/352 (43%), Gaps = 42/352 (11%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDFTFDSCRLYG----WRCRAKL 106
CP ++ C GC + + +V + + IG L+ + G WR R K
Sbjct: 78 CPIYKECGGCQLQHLSYEGQMVAKEKQVREVLTRIGKLE-NVKVHPVLGMEEPWRYRNKA 136
Query: 107 AV-RGTSTSPLIG-LYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
V G LIG YQ+ TH ++D+ C + + V+++++ V YDE
Sbjct: 137 QVPIGDQEGGLIGGFYQQRTHQIIDMKTCLIQQEKNDEVVQIVKEVCNRFGVRAYDEAKH 196
Query: 165 TGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGG 224
G LR++ + RY ++ +V +R PN +K+ + E + + GG
Sbjct: 197 KGTLRHIMV-------------RYGLVTKEVMVVLVARTSDLPNKNKI--VMEIVEKVGG 241
Query: 225 SRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRA 284
+ SV N NVI G+ L GE ++ +G I +++ SF Q N
Sbjct: 242 -------LKSVILNVNAKKTNVIMGDESEVLWGEEVIYDYIGEIKFAISSRSFYQVNPDQ 294
Query: 285 FDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTV 342
+L K +Y +V D Y G G I L LA +K R V VEI E+ + +
Sbjct: 295 TKVLYGKALEYADLRGEETVIDAYCGIGTISLFLA--QKARKVYGVEIVPEA-IEDARRN 351
Query: 343 SRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L V+ + A+ I W V +DVLVVDPPRKG D +L+ +
Sbjct: 352 AELNGIVNAEFAVGEAETVIP--RWYESGVQADVLVVDPPRKGCDEALLRTI 401
>gi|383754875|ref|YP_005433778.1| putative RNA methyltransferase [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381366927|dbj|BAL83755.1| putative RNA methyltransferase [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 457
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 91/366 (24%), Positives = 152/366 (41%), Gaps = 65/366 (17%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGL-LDFTFDSCRLYGWRCRAK 105
C + C GC + R ++D T K L ++ T + + +R + +
Sbjct: 77 CDIYDKCGGCQLQHLDYMAQLQAKRQQVIDAVTRIGKQPDLHVEPTIGAATPWNYRNKMQ 136
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
+ +IG + +G+H ++D C N V +R+ + +LN+ Y+ED T
Sbjct: 137 FPIGRDKGKTIIGCFAQGSHEIIDTTDCHIQKEGNNEVVNAVREIVTKLNIPVYNEDKHT 196
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGS 225
G LR+V V RNG + + +V ++ K + + L
Sbjct: 197 GVLRHVVGRVG------------RNGDIMVVIVTATKT-----MPKEKEFVKML------ 233
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
R+R + SV N QT NNVI G + L G +++G ++ ++P SF Q NT
Sbjct: 234 RARLPKVVSVHQNIQTYHNNVIMGRDTKLLWGRPTIQDSIGRLNFHISPRSFFQVNTSQA 293
Query: 286 DILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
++L K +Y +V D Y G G I L L A+K SV +EI K + L +K
Sbjct: 294 EVLYSKALEYANLTGQETVIDAYCGTGTITLFL--AQKAHSVIGIEIVKPAILDAQKNAR 351
Query: 344 RLPKSVDGNISWHNADNSIEPLSWLVG---------------SDVLVVDPPRKGLDSSLV 388
DN++ ++VG +DV+VVDPPR G +++
Sbjct: 352 ---------------DNNVRNAEFIVGDATKVMPRLFKQGTRADVVVVDPPRAGCTPTVL 396
Query: 389 HALQSI 394
++
Sbjct: 397 ETFANM 402
>gi|317473452|ref|ZP_07932746.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerostipes sp.
3_2_56FAA]
gi|316899102|gb|EFV21122.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerostipes sp.
3_2_56FAA]
Length = 458
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 99/379 (26%), Positives = 155/379 (40%), Gaps = 81/379 (21%)
Query: 53 QCPHFQSCSGCT-----------HEFN-----LHRPIIVDEATDFFKSIGLLDFTFDSCR 96
+CP+ + C GCT ++FN L R ++ A + I +D
Sbjct: 72 KCPNARPCGGCTLQHLSYEKQLEYKFNKVKNCLERIGGIENAGSLMEPIYGMD------E 125
Query: 97 LYGWRCRAKLAVRGTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELN 155
Y +R +A+ V LI G Y TH+++D HC HP + + ++ +
Sbjct: 126 PYYYRNKAQFPVGRNKDGKLITGFYAGRTHSIIDCTHCSIQHPVNEEILSKVLDYMERNH 185
Query: 156 VEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPN-SDKLES 214
VEPYDE + G +R++ V + G++ + LV N R + N S+ ++S
Sbjct: 186 VEPYDEKNHRGLVRHIMTRVG-----------FVTGEIMVCLVVNGRKKDLLNLSELVDS 234
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
L E + S+ N N I GN+ + G ++ +G + + P
Sbjct: 235 LKEI-----------EGMTSICVNSNWEKTNRIMGNKVEEVYGPAYIYDYIGNVKYQIGP 283
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGASVT--DLYAGAGVIGLSLAAARKCRSVKCVEINK 332
SF Q N R +L K +Y + T DLY G G I L LA +K + V VEI K
Sbjct: 284 LSFFQVNPRQTKVLYEKALQYAGLCGNETVWDLYCGIGTISLFLA--QKAKQVYGVEIVK 341
Query: 333 ES----------------QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV 376
E+ Q K LP+ + N + +DV+VV
Sbjct: 342 EAIEDARLNAEMNHMDNVQFFVGKAEEVLPREYEKNGVY---------------ADVIVV 386
Query: 377 DPPRKGLDSSLVHALQSIG 395
DPPRKG D +L+ + +G
Sbjct: 387 DPPRKGCDRALLDTMVKMG 405
>gi|15893813|ref|NP_347162.1| SAM-dependent methyltransferase [Clostridium acetobutylicum ATCC
824]
gi|337735737|ref|YP_004635184.1| SAM-dependent methyltransferase [Clostridium acetobutylicum DSM
1731]
gi|50401652|sp|Q97LN4.1|Y523_CLOAB RecName: Full=Uncharacterized RNA methyltransferase CA_C0523
gi|15023386|gb|AAK78502.1|AE007567_4 SAM-dependent methyltransferase related to
tRNA(uracyl-5-)-methyltransferase (trmA family)
[Clostridium acetobutylicum ATCC 824]
gi|336290152|gb|AEI31286.1| SAM-dependent methyltransferase [Clostridium acetobutylicum DSM
1731]
Length = 460
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 91/371 (24%), Positives = 155/371 (41%), Gaps = 78/371 (21%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRL--------- 97
C ++ C GC T + + ++ + K IG LD + S R+
Sbjct: 77 CSIYKKCGGCQLQHLKYTEQLEFKK----NKVVECLKRIGKLDLS--SVRINETIGMEDP 130
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
Y +R + +L V T+ IG Y+E +H ++++ C N + L+++ IKE N+E
Sbjct: 131 YFYRNKVQLPVGETAGEAKIGFYRERSHEIIEVDKCFIQDDSANEIILLIKRWIKEFNIE 190
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
Y+E G LR++ + + ++ G++ + LV N+ N P+ +L +
Sbjct: 191 GYNEYSGKGTLRHIMI-----------RKAFKTGQIMLVLVTNTEN--VPHKKELIHMI- 236
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
+ I + N NVI G R L GE+ + +G +++ SF
Sbjct: 237 --------TTEIQGIKGIIQNINNKKTNVILGQREITLWGESTIEDYIGEFKFNISSKSF 288
Query: 278 GQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q N + L KY V D Y G G I L L ++ + V VEI
Sbjct: 289 FQVNPIQTEKLYSAALKYAGLTGKEVVFDAYCGTGTISLFL--SQNAKKVYGVEI----- 341
Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPPR 380
+P++++ N + N IE ++VG +V+VVDPPR
Sbjct: 342 ---------IPEAIE-NAKINAKQNGIENTEFIVGKSEEEIPKLIEKGIAPEVVVVDPPR 391
Query: 381 KGLDSSLVHAL 391
KG + SL+H++
Sbjct: 392 KGCEKSLLHSI 402
>gi|433542667|ref|ZP_20499091.1| 23S rRNA (uracil-5-)-methyltransferase [Brevibacillus agri
BAB-2500]
gi|432185984|gb|ELK43461.1| 23S rRNA (uracil-5-)-methyltransferase [Brevibacillus agri
BAB-2500]
Length = 464
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 89/354 (25%), Positives = 155/354 (43%), Gaps = 40/354 (11%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVDEATDFFK-SIGLLDFTFDSCRLYGWRCRAK 105
CP ++ C GC+ + + I+++ + + S + T + +R +A+
Sbjct: 82 CPVYKECGGCSLQHMDYAAQLASKQEIVIESLRKYARLSDPPVAPTIGMDNPWSYRNKAQ 141
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
V + + GLYQ G+H +VD+ C+ H V+ +Q I+EL + YDE RT
Sbjct: 142 FQVGKQNGKLIAGLYQTGSHKLVDLEGCQVQHEATTKIVQAAKQIIEELGIPVYDERKRT 201
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGS 225
G +R ++ A + G+ Q+TLV ++ ++ + E +
Sbjct: 202 GVIR-----------TIVARVAFATGETQLTLVTATK--------EIPRVKELILE---L 239
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
R+R + S+ N +++FG++ L G E +G + L+ +F Q N
Sbjct: 240 RTRLPELVSIAQNVNPQKTSLVFGDQTFSLWGRPAIAEKLGELSFDLSARAFFQLNPEQT 299
Query: 286 DILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
L +++K V DLY G G IGL LA R V+ +E+ E+ + +
Sbjct: 300 KKLYNEVKKAAALTGKELVLDLYCGTGTIGLWLAP--HAREVRGIELIPEAVEDANRNAA 357
Query: 344 RLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
R + N S+H + W DV+VVDPPR GLD +L+ +L +
Sbjct: 358 RNQAT---NASFHVGRAEVLMPKWAKQGTRPDVVVVDPPRTGLDDALIRSLLDV 408
>gi|384457248|ref|YP_005669668.1| SAM-dependent methyltransferase [Clostridium acetobutylicum EA
2018]
gi|325507937|gb|ADZ19573.1| SAM-dependent methyltransferase [Clostridium acetobutylicum EA
2018]
Length = 460
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/371 (24%), Positives = 155/371 (41%), Gaps = 78/371 (21%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRL--------- 97
C ++ C GC T + + ++ + K IG LD + S R+
Sbjct: 77 CSIYKKCGGCQLQHLKYTEQLEFKK----NKVVECLKRIGKLDLS--SVRINETIGMEDP 130
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
Y +R + +L V T+ IG Y+E +H ++++ C N + L+++ IKE N+E
Sbjct: 131 YFYRNKVQLPVGETAGEAKIGFYRERSHEIIEVDKCFIQDDSANEIILLIKRWIKEFNIE 190
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
Y+E G LR++ + + ++ G++ + LV N+ N P+ +L +
Sbjct: 191 GYNEYSGKGTLRHIMI-----------RKAFKTGQIMLVLVTNTEN--VPHKKELIHMI- 236
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
+ I + N NVI G R L GE+ + +G +++ SF
Sbjct: 237 --------TTEIQGIKGIIQNINNKKTNVILGQREITLWGESTIEDYIGEFKFNISSKSF 288
Query: 278 GQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q N + L KY V D Y G G I L L ++ + V VEI
Sbjct: 289 FQMNPIQTEKLYSAALKYAGLTGKEVVFDAYCGTGTISLFL--SQNAKKVYGVEI----- 341
Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPPR 380
+P++++ N + N IE ++VG +V+VVDPPR
Sbjct: 342 ---------IPEAIE-NAKINAKQNGIENTEFIVGKSEEEIPKLIEKGIAPEVVVVDPPR 391
Query: 381 KGLDSSLVHAL 391
KG + SL+H++
Sbjct: 392 KGCEKSLLHSI 402
>gi|227529794|ref|ZP_03959843.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus vaginalis ATCC
49540]
gi|227350278|gb|EEJ40569.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus vaginalis ATCC
49540]
Length = 464
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 154/338 (45%), Gaps = 43/338 (12%)
Query: 66 EFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQ 121
+ R +++D + + FK G ++ T + YG+R +A VR GLY+
Sbjct: 102 QLRFKRQVVLD-SLEKFKPYGYRNYDVRPTIAAPHEYGYRNKASFQVRMIDGHVAAGLYK 160
Query: 122 EGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTS 181
+H++VDI C P + + Q I++L + YDE+ +G ++ +
Sbjct: 161 ANSHDLVDIQECAVQMPNTMKVIRTVVQAIEDLQIPVYDEERNSGIIK-----------T 209
Query: 182 LPASERYRNGKVQITLVWNSRNEKSPNSDK-LESLAEFLWRNGGSRSREHYIHSVWANFQ 240
L E G+VQ+TL+ N+ K P+ + LE++ E L + + SV N
Sbjct: 210 LVVRESAATGEVQLTLITNT--SKLPHKRQLLEAIQEQLPK----------VVSVMQNVN 257
Query: 241 TSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPY-- 298
+I+G + HL G+ E++ G+D L+ SF Q N + L + K +
Sbjct: 258 PGDTPLIWGEQMIHLAGQEYITESLMGLDFRLSARSFLQLNPEQTETLYEEAAKALELSP 317
Query: 299 GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNA 358
G ++ D YAG G IGLSL A + + V +E E+ ++ +++G + H
Sbjct: 318 GDTLIDAYAGIGTIGLSL--ANRVKEVWGMETIPEAVADAKQNA-----NLNGITNAHYE 370
Query: 359 DNSIEPL--SWLVGS---DVLVVDPPRKGLDSSLVHAL 391
S E + W D LVVDPPR GLD+ L+ +
Sbjct: 371 VGSAEDVIPQWRKEGHHFDALVVDPPRTGLDNDLIEQI 408
>gi|418065222|ref|ZP_12702596.1| RNA methyltransferase, TrmA family [Geobacter metallireducens RCH3]
gi|373562400|gb|EHP88611.1| RNA methyltransferase, TrmA family [Geobacter metallireducens RCH3]
Length = 427
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 98/352 (27%), Positives = 155/352 (44%), Gaps = 44/352 (12%)
Query: 59 SCSGC-------THEFNLHRPIIVDEATDFFKSIGL-LDFTFDSCRLYGWRCRAKLAVRG 110
+CS C + L R ++ E F + +D S R +R AKL V G
Sbjct: 25 ACSNCPLISMNYGAQLTLKRSLVEKEIRSFASLRAVPIDDVISSPRPLQYRNSAKLVVAG 84
Query: 111 TSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRY 170
T SP+IG+Y+ +HNVVDI C H+P IN V ++GI++ V Y+ TG LRY
Sbjct: 85 TFKSPIIGIYRRNSHNVVDISACPLHNPLINRVVAAAKEGIRKGKVPVYNPRTDTGILRY 144
Query: 171 VQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREH 230
+ + V+ + G+ V R + +++ LA+F+ R
Sbjct: 145 LVVRVSEH-----------TGRAMAVFVTAQR-----SYNEIHHLAKFV------RQAVP 182
Query: 231 YIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLR 290
+ N TS NVI L + E + GI S++P SF Q N+ + I+
Sbjct: 183 ELDVAVQNVNTSEGNVILAPHDHFLTKDHAIIEELAGIRFSISPRSFFQVNSGSARIIYE 242
Query: 291 KLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKS 348
K++++ + V DLY G G G+SL A + V +E + E+ +RL
Sbjct: 243 KVREWSALTGNEKVVDLYCGIG--GISLFLAPGAQEVHGIEYVDAAVADAERN-ARL--- 296
Query: 349 VDG--NISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSIG 395
+G N S+ D + + DV++ +PPRKG D ++ A + G
Sbjct: 297 -NGIRNCSFEAGDAAELLEELVEEGTEPDVVIFNPPRKGCDRRVLEAAVNSG 347
>gi|422727317|ref|ZP_16783759.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0312]
gi|315157726|gb|EFU01743.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0312]
Length = 504
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 145/310 (46%), Gaps = 58/310 (18%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR G +++ +H+++ + H P I+AA+ +R +++ +V+PY
Sbjct: 177 YRNKAQIPVRKIDNQLQTGFFRKNSHDLISMEHFYIQDPEIDAAIVKIRDIMRKYSVKPY 236
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEK-SPNS----DKLES 214
+E D TG+LR++ + Y G++ + L+ +R K P S D LE+
Sbjct: 237 NESDNTGNLRHIVV-----------RRGYHTGEMMVVLI--TRTPKLFPISKIVPDILEA 283
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
+ E + S+ N NVIFG+ L G + + + ++
Sbjct: 284 IPEVV--------------SIVQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISA 329
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
SF Q N + +++ +K+++Y + V D Y G G IGL+L A+ + V +E+ +
Sbjct: 330 RSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTL--AQDAKQVYGIEVIE 387
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSI-------EPLSWLVGS----DVLVVDPPRK 381
E+ K + N +N +N+ E L LV DV+VVDPPRK
Sbjct: 388 EA-----------VKDAENNAKLNNIENATFTAGLAEELLPKLVEKGLQPDVVVVDPPRK 436
Query: 382 GLDSSLVHAL 391
GLD LV+ L
Sbjct: 437 GLDGQLVNTL 446
>gi|422700753|ref|ZP_16758596.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1342]
gi|315170705|gb|EFU14722.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1342]
Length = 468
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 146/310 (47%), Gaps = 58/310 (18%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR G +++ +H+++ + H P I+AA+ +R +++ +V+PY
Sbjct: 141 YRNKAQIPVRKIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPY 200
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEK-SPNS----DKLES 214
+E D TG+LR++ + Y G++ + L+ +R K P S D LE+
Sbjct: 201 NESDNTGNLRHIVV-----------RRGYHTGEMMVVLI--TRTPKLFPISKIVPDILEA 247
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
+ E + S+ N NVIFG+ L G + + + ++
Sbjct: 248 IPEVV--------------SIVQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISA 293
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
SF Q N + +++ +K+++Y + V D Y G G IGL+L A+ + V +E+ +
Sbjct: 294 RSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTL--AQDAKQVYGIEVIE 351
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSI-------EPLSWLVGS----DVLVVDPPRK 381
E+ K + N +N +N+ E L LV + DV+VVDPPRK
Sbjct: 352 EAV-----------KDAENNAKLNNIENATFTAGLAEELLPKLVENGLQPDVVVVDPPRK 400
Query: 382 GLDSSLVHAL 391
GLD LV+ L
Sbjct: 401 GLDGQLVNTL 410
>gi|257086087|ref|ZP_05580448.1| RNA methyltransferase [Enterococcus faecalis D6]
gi|256994117|gb|EEU81419.1| RNA methyltransferase [Enterococcus faecalis D6]
Length = 457
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 146/310 (47%), Gaps = 58/310 (18%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR G +++ +H+++ + H P I+AA+ +R +++ +V+PY
Sbjct: 130 YRNKAQIPVRKIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPY 189
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEK-SPNS----DKLES 214
+E D TG+LR++ + Y G++ + L+ +R K P S D LE+
Sbjct: 190 NESDNTGNLRHIVV-----------RRGYHTGEMMVVLI--TRTPKLFPISKIVPDILEA 236
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
+ E + S+ N NVIFG+ L G + + + ++
Sbjct: 237 IPEVV--------------SIVQNVNPKRTNVIFGDETILLHGSKKITDTIFDLKFEISA 282
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
SF Q N + +++ +K+++Y + V D Y G G IGL+L A+ + V +E+ +
Sbjct: 283 RSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTL--AQDAKQVYGIEVIE 340
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSI-------EPLSWLVGS----DVLVVDPPRK 381
E+ K + N +N +N+ E L LV + DV+VVDPPRK
Sbjct: 341 EAV-----------KDAENNAKLNNIENATFTAGLAEELLPKLVENGLQPDVVVVDPPRK 389
Query: 382 GLDSSLVHAL 391
GLD LV+ L
Sbjct: 390 GLDGQLVNTL 399
>gi|256854405|ref|ZP_05559769.1| RNA methyltransferase [Enterococcus faecalis T8]
gi|384512429|ref|YP_005707522.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecalis
OG1RF]
gi|422727951|ref|ZP_16784372.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0012]
gi|256709965|gb|EEU25009.1| RNA methyltransferase [Enterococcus faecalis T8]
gi|315151570|gb|EFT95586.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0012]
gi|327534318|gb|AEA93152.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecalis
OG1RF]
Length = 468
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 146/310 (47%), Gaps = 58/310 (18%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR G +++ +H+++ + H P I+AA+ +R +++ +V+PY
Sbjct: 141 YRNKAQIPVRKIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPY 200
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEK-SPNS----DKLES 214
+E D TG+LR++ + Y G++ + L+ +R K P S D LE+
Sbjct: 201 NESDNTGNLRHIVV-----------RRGYHTGEMMVVLI--TRTPKLFPISKIVPDILEA 247
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
+ E + S+ N NVIFG+ L G + + + ++
Sbjct: 248 IPEVV--------------SIVQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISA 293
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
SF Q N + +++ +K+++Y + V D Y G G IGL+L A+ + V +E+ +
Sbjct: 294 RSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTL--AQDAKQVYGIEVIE 351
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSI-------EPLSWLVGS----DVLVVDPPRK 381
E+ K + N +N +N+ E L LV + DV+VVDPPRK
Sbjct: 352 EAV-----------KDAENNAKLNNIENATFTAGLAEELLPKLVENGLQPDVVVVDPPRK 400
Query: 382 GLDSSLVHAL 391
GLD LV+ L
Sbjct: 401 GLDGQLVNTL 410
>gi|307269782|ref|ZP_07551112.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX4248]
gi|307272542|ref|ZP_07553795.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0855]
gi|422709344|ref|ZP_16766800.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0027]
gi|422868001|ref|ZP_16914563.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1467]
gi|306510827|gb|EFM79844.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0855]
gi|306513892|gb|EFM82494.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX4248]
gi|315036107|gb|EFT48039.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0027]
gi|329576886|gb|EGG58371.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1467]
Length = 468
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 146/310 (47%), Gaps = 58/310 (18%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR G +++ +H+++ + H P I+AA+ +R +++ +V+PY
Sbjct: 141 YRNKAQIPVRKIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPY 200
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEK-SPNS----DKLES 214
+E D TG+LR++ + Y G++ + L+ +R K P S D LE+
Sbjct: 201 NESDNTGNLRHIVV-----------RRGYHTGEMMVVLI--TRTPKLFPISKIVPDILEA 247
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
+ E + S+ N NVIFG+ L G + + + ++
Sbjct: 248 IPEVV--------------SIVQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISA 293
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
SF Q N + +++ +K+++Y + V D Y G G IGL+L A+ + V +E+ +
Sbjct: 294 RSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTL--AQDAKQVYGIEVIE 351
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSI-------EPLSWLVGS----DVLVVDPPRK 381
E+ K + N +N +N+ E L LV + DV+VVDPPRK
Sbjct: 352 EAV-----------KDAENNAKLNNIENATFTAGLAEELLPKLVENGLQPDVVVVDPPRK 400
Query: 382 GLDSSLVHAL 391
GLD LV+ L
Sbjct: 401 GLDGQLVNTL 410
>gi|33355823|gb|AAQ16244.1| RNA methyl transferase-like [Enterococcus faecalis]
Length = 571
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 146/310 (47%), Gaps = 58/310 (18%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR G +++ +H+++ + H P I+AA+ +R +++ +V+PY
Sbjct: 141 YRNKAQIPVRKIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPY 200
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEK-SPNS----DKLES 214
+E D TG+LR++ + Y G++ + L+ +R K P S D LE+
Sbjct: 201 NESDNTGNLRHIVV-----------RRGYHTGEMMVVLI--TRTPKLFPISKIVPDILEA 247
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
+ E + S+ N NVIFG+ L G + + + ++
Sbjct: 248 IPEVV--------------SIVQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISA 293
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
SF Q N + +++ +K+++Y + V D Y G G IGL+L A+ + V +E+ +
Sbjct: 294 RSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTL--AQDAKQVYGIEVIE 351
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSI-------EPLSWLVGS----DVLVVDPPRK 381
E+ K + N +N +N+ E L LV + DV+VVDPPRK
Sbjct: 352 EAV-----------KDAENNAKLNNIENATFTAGLAEELLPKLVENGLQPDVVVVDPPRK 400
Query: 382 GLDSSLVHAL 391
GLD LV+ L
Sbjct: 401 GLDGQLVNTL 410
>gi|256959863|ref|ZP_05564034.1| RNA methyltransferase [Enterococcus faecalis Merz96]
gi|256950359|gb|EEU66991.1| RNA methyltransferase [Enterococcus faecalis Merz96]
Length = 457
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 146/310 (47%), Gaps = 58/310 (18%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR G +++ +H+++ + H P I+AA+ +R +++ +V+PY
Sbjct: 130 YRNKAQIPVRKIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPY 189
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEK-SPNS----DKLES 214
+E D TG+LR++ + Y G++ + L+ +R K P S D LE+
Sbjct: 190 NESDNTGNLRHIVV-----------RRGYHTGEMMVVLI--TRTPKLFPISKIVPDILEA 236
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
+ E + S+ N NVIFG+ L G + + + ++
Sbjct: 237 IPEVV--------------SIVQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISA 282
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
SF Q N + +++ +K+++Y + V D Y G G IGL+L A+ + V +E+ +
Sbjct: 283 RSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTL--AQDAKQVYGIEVIE 340
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSI-------EPLSWLVGS----DVLVVDPPRK 381
E+ K + N +N +N+ E L LV + DV+VVDPPRK
Sbjct: 341 EAV-----------KDAENNAKLNNIENATFTAGLAEELLPKLVENGLQPDVVVVDPPRK 389
Query: 382 GLDSSLVHAL 391
GLD LV+ L
Sbjct: 390 GLDGQLVNTL 399
>gi|293385052|ref|ZP_06630886.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
R712]
gi|293389323|ref|ZP_06633784.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
S613]
gi|312906041|ref|ZP_07765054.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
DAPTO 512]
gi|312909387|ref|ZP_07768243.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
DAPTO 516]
gi|291077730|gb|EFE15094.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
R712]
gi|291081345|gb|EFE18308.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
S613]
gi|310628036|gb|EFQ11319.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
DAPTO 512]
gi|311290411|gb|EFQ68967.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
DAPTO 516]
Length = 504
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 146/310 (47%), Gaps = 58/310 (18%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR G +++ +H+++ + H P I+AA+ +R +++ +V+PY
Sbjct: 177 YRNKAQIPVRKIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPY 236
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEK-SPNS----DKLES 214
+E D TG+LR++ + Y G++ + L+ +R K P S D LE+
Sbjct: 237 NESDNTGNLRHIVV-----------RRGYHTGEMMVVLI--TRTPKLFPISKIVPDILEA 283
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
+ E + S+ N NVIFG+ L G + + + ++
Sbjct: 284 IPEVV--------------SIVQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISA 329
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
SF Q N + +++ +K+++Y + V D Y G G IGL+L A+ + V +E+ +
Sbjct: 330 RSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTL--AQDAKQVYGIEVIE 387
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSI-------EPLSWLVGS----DVLVVDPPRK 381
E+ K + N +N +N+ E L LV + DV+VVDPPRK
Sbjct: 388 EA-----------VKDAENNAKLNNIENATFTAGLAEELLPKLVENGLQPDVVVVDPPRK 436
Query: 382 GLDSSLVHAL 391
GLD LV+ L
Sbjct: 437 GLDGQLVNTL 446
>gi|257420988|ref|ZP_05597978.1| RNA methyltransferase [Enterococcus faecalis X98]
gi|257162812|gb|EEU92772.1| RNA methyltransferase [Enterococcus faecalis X98]
Length = 457
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 146/310 (47%), Gaps = 58/310 (18%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR G +++ +H+++ + H P I+AA+ +R +++ +V+PY
Sbjct: 130 YRNKAQIPVRKIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPY 189
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEK-SPNS----DKLES 214
+E D TG+LR++ + Y G++ + L+ +R K P S D LE+
Sbjct: 190 NESDNTGNLRHIVV-----------RRGYHTGEMMVVLI--TRTPKLFPISKIVPDILEA 236
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
+ E + S+ N NVIFG+ L G + + + ++
Sbjct: 237 IPEVV--------------SIVQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISA 282
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
SF Q N + +++ +K+++Y + V D Y G G IGL+L A+ + V +E+ +
Sbjct: 283 RSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTL--AQDAKQVYGIEVIE 340
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSI-------EPLSWLVGS----DVLVVDPPRK 381
E+ K + N +N +N+ E L LV + DV+VVDPPRK
Sbjct: 341 EAV-----------KDAENNAKLNNIENATFTAGLAEELLPKLVENGLQPDVVVVDPPRK 389
Query: 382 GLDSSLVHAL 391
GLD LV+ L
Sbjct: 390 GLDGQLVNTL 399
>gi|256957402|ref|ZP_05561573.1| RNA methyltransferase [Enterococcus faecalis DS5]
gi|256964435|ref|ZP_05568606.1| RNA methyltransferase [Enterococcus faecalis HIP11704]
gi|257077602|ref|ZP_05571963.1| RNA methyltransferase [Enterococcus faecalis JH1]
gi|294779933|ref|ZP_06745314.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
PC1.1]
gi|397699125|ref|YP_006536913.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
D32]
gi|256947898|gb|EEU64530.1| RNA methyltransferase [Enterococcus faecalis DS5]
gi|256954931|gb|EEU71563.1| RNA methyltransferase [Enterococcus faecalis HIP11704]
gi|256985632|gb|EEU72934.1| RNA methyltransferase [Enterococcus faecalis JH1]
gi|294452982|gb|EFG21403.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
PC1.1]
gi|397335764|gb|AFO43436.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
D32]
Length = 457
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 146/310 (47%), Gaps = 58/310 (18%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR G +++ +H+++ + H P I+AA+ +R +++ +V+PY
Sbjct: 130 YRNKAQIPVRKIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPY 189
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEK-SPNS----DKLES 214
+E D TG+LR++ + Y G++ + L+ +R K P S D LE+
Sbjct: 190 NESDNTGNLRHIVV-----------RRGYHTGEMMVVLI--TRTPKLFPISKIVPDILEA 236
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
+ E + S+ N NVIFG+ L G + + + ++
Sbjct: 237 IPEVV--------------SIVQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISA 282
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
SF Q N + +++ +K+++Y + V D Y G G IGL+L A+ + V +E+ +
Sbjct: 283 RSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTL--AQDAKQVYGIEVIE 340
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSI-------EPLSWLVGS----DVLVVDPPRK 381
E+ K + N +N +N+ E L LV + DV+VVDPPRK
Sbjct: 341 EAV-----------KDAENNAKLNNIENATFTAGLAEELLPKLVENGLQPDVVVVDPPRK 389
Query: 382 GLDSSLVHAL 391
GLD LV+ L
Sbjct: 390 GLDGQLVNTL 399
>gi|255971187|ref|ZP_05421773.1| RNA methyltransferase [Enterococcus faecalis T1]
gi|255973811|ref|ZP_05424397.1| RNA methyltransferase [Enterococcus faecalis T2]
gi|257083655|ref|ZP_05578016.1| RNA methyltransferase [Enterococcus faecalis Fly1]
gi|384517791|ref|YP_005705096.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
62]
gi|430360270|ref|ZP_19426193.1| RNA methyltransferase [Enterococcus faecalis OG1X]
gi|430368878|ref|ZP_19428425.1| RNA methyltransferase [Enterococcus faecalis M7]
gi|255962205|gb|EET94681.1| RNA methyltransferase [Enterococcus faecalis T1]
gi|255966683|gb|EET97305.1| RNA methyltransferase [Enterococcus faecalis T2]
gi|256991685|gb|EEU78987.1| RNA methyltransferase [Enterococcus faecalis Fly1]
gi|323479924|gb|ADX79363.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
62]
gi|429512962|gb|ELA02556.1| RNA methyltransferase [Enterococcus faecalis OG1X]
gi|429516067|gb|ELA05564.1| RNA methyltransferase [Enterococcus faecalis M7]
Length = 457
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 146/310 (47%), Gaps = 58/310 (18%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR G +++ +H+++ + H P I+AA+ +R +++ +V+PY
Sbjct: 130 YRNKAQIPVRKIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPY 189
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEK-SPNS----DKLES 214
+E D TG+LR++ + Y G++ + L+ +R K P S D LE+
Sbjct: 190 NESDNTGNLRHIVV-----------RRGYHTGEMMVVLI--TRTPKLFPISKIVPDILEA 236
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
+ E + S+ N NVIFG+ L G + + + ++
Sbjct: 237 IPEVV--------------SIVQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISA 282
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
SF Q N + +++ +K+++Y + V D Y G G IGL+L A+ + V +E+ +
Sbjct: 283 RSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTL--AQDAKQVYGIEVIE 340
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSI-------EPLSWLVGS----DVLVVDPPRK 381
E+ K + N +N +N+ E L LV + DV+VVDPPRK
Sbjct: 341 EAV-----------KDAENNAKLNNIENATFTAGLAEELLPKLVENGLQPDVVVVDPPRK 389
Query: 382 GLDSSLVHAL 391
GLD LV+ L
Sbjct: 390 GLDGQLVNTL 399
>gi|257415298|ref|ZP_05592292.1| RNA methyltransferase [Enterococcus faecalis ARO1/DG]
gi|257157126|gb|EEU87086.1| RNA methyltransferase [Enterococcus faecalis ARO1/DG]
Length = 457
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 146/310 (47%), Gaps = 58/310 (18%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR G +++ +H+++ + H P I+AA+ +R +++ +V+PY
Sbjct: 130 YRNKAQIPVRKIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPY 189
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEK-SPNS----DKLES 214
+E D TG+LR++ + Y G++ + L+ +R K P S D LE+
Sbjct: 190 NESDNTGNLRHIVV-----------RRGYHTGEMMVVLI--TRTPKLFPISKIVPDILEA 236
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
+ E + S+ N NVIFG+ L G + + + ++
Sbjct: 237 IPEVV--------------SIVQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISA 282
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
SF Q N + +++ +K+++Y + V D Y G G IGL+L A+ + V +E+ +
Sbjct: 283 RSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTL--AQDAKQVYGIEVIE 340
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSI-------EPLSWLVGS----DVLVVDPPRK 381
E+ K + N +N +N+ E L LV + DV+VVDPPRK
Sbjct: 341 EAV-----------KDAENNAKLNNIENATFTAGLAEELLPKLVENGLQPDVVVVDPPRK 389
Query: 382 GLDSSLVHAL 391
GLD LV+ L
Sbjct: 390 GLDGQLVNTL 399
>gi|29375324|ref|NP_814478.1| RNA methyltransferase [Enterococcus faecalis V583]
gi|256617615|ref|ZP_05474461.1| RNA methyltransferase [Enterococcus faecalis ATCC 4200]
gi|256761497|ref|ZP_05502077.1| RNA methyltransferase [Enterococcus faecalis T3]
gi|257089155|ref|ZP_05583516.1| RNA methyltransferase [Enterococcus faecalis CH188]
gi|257418339|ref|ZP_05595333.1| RNA methyltransferase trmA [Enterococcus faecalis T11]
gi|50401543|sp|Q837V0.1|Y728_ENTFA RecName: Full=Uncharacterized RNA methyltransferase EF_0728
gi|29342784|gb|AAO80548.1| RNA methyltransferase, TrmA family [Enterococcus faecalis V583]
gi|256597142|gb|EEU16318.1| RNA methyltransferase [Enterococcus faecalis ATCC 4200]
gi|256682748|gb|EEU22443.1| RNA methyltransferase [Enterococcus faecalis T3]
gi|256997967|gb|EEU84487.1| RNA methyltransferase [Enterococcus faecalis CH188]
gi|257160167|gb|EEU90127.1| RNA methyltransferase trmA [Enterococcus faecalis T11]
Length = 457
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 146/310 (47%), Gaps = 58/310 (18%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR G +++ +H+++ + H P I+AA+ +R +++ +V+PY
Sbjct: 130 YRNKAQIPVRKIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPY 189
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEK-SPNS----DKLES 214
+E D TG+LR++ + Y G++ + L+ +R K P S D LE+
Sbjct: 190 NESDNTGNLRHIVV-----------RRGYHTGEMMVVLI--TRTPKLFPISKIVPDILEA 236
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
+ E + S+ N NVIFG+ L G + + + ++
Sbjct: 237 IPEVV--------------SIVQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISA 282
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
SF Q N + +++ +K+++Y + V D Y G G IGL+L A+ + V +E+ +
Sbjct: 283 RSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTL--AQDAKQVYGIEVIE 340
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSI-------EPLSWLVGS----DVLVVDPPRK 381
E+ K + N +N +N+ E L LV + DV+VVDPPRK
Sbjct: 341 EA-----------VKDAENNAKLNNIENATFTAGLAEELLPKLVENGLQPDVVVVDPPRK 389
Query: 382 GLDSSLVHAL 391
GLD LV+ L
Sbjct: 390 GLDGQLVNTL 399
>gi|422724282|ref|ZP_16780761.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX2137]
gi|424675593|ref|ZP_18112492.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
599]
gi|315025773|gb|EFT37705.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX2137]
gi|402350858|gb|EJU85755.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
599]
Length = 504
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 146/310 (47%), Gaps = 58/310 (18%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR G +++ +H+++ + H P I+AA+ +R +++ +V+PY
Sbjct: 177 YRNKAQIPVRKIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPY 236
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEK-SPNS----DKLES 214
+E D TG+LR++ + Y G++ + L+ +R K P S D LE+
Sbjct: 237 NESDNTGNLRHIVV-----------RRGYHTGEMMVVLI--TRTPKLFPISKIVPDILEA 283
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
+ E + S+ N NVIFG+ L G + + + ++
Sbjct: 284 IPEVV--------------SIVQNVNPKRTNVIFGDETILLHGSKKITDTIFDLKFEISA 329
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
SF Q N + +++ +K+++Y + V D Y G G IGL+L A+ + V +E+ +
Sbjct: 330 RSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTL--AQDAKQVYGIEVIE 387
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSI-------EPLSWLVGS----DVLVVDPPRK 381
E+ K + N +N +N+ E L LV + DV+VVDPPRK
Sbjct: 388 EA-----------VKDAENNAKLNNIENATFTAGLAEELLPKLVENGLQPDVVVVDPPRK 436
Query: 382 GLDSSLVHAL 391
GLD LV+ L
Sbjct: 437 GLDGQLVNTL 446
>gi|307289579|ref|ZP_07569523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0109]
gi|422703956|ref|ZP_16761772.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1302]
gi|306499393|gb|EFM68766.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0109]
gi|315164578|gb|EFU08595.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1302]
Length = 504
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 146/310 (47%), Gaps = 58/310 (18%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR G +++ +H+++ + H P I+AA+ +R +++ +V+PY
Sbjct: 177 YRNKAQIPVRKIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPY 236
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEK-SPNS----DKLES 214
+E D TG+LR++ + Y G++ + L+ +R K P S D LE+
Sbjct: 237 NESDNTGNLRHIVV-----------RRGYHTGEMMVVLI--TRTPKLFPISKIVPDILEA 283
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
+ E + S+ N NVIFG+ L G + + + ++
Sbjct: 284 IPEVV--------------SIVQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISA 329
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
SF Q N + +++ +K+++Y + V D Y G G IGL+L A+ + V +E+ +
Sbjct: 330 RSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTL--AQDAKQVYGIEVIE 387
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSI-------EPLSWLVGS----DVLVVDPPRK 381
E+ K + N +N +N+ E L LV + DV+VVDPPRK
Sbjct: 388 EA-----------VKDAENNAKLNNIENATFTAGLAEELLPKLVENGLQPDVVVVDPPRK 436
Query: 382 GLDSSLVHAL 391
GLD LV+ L
Sbjct: 437 GLDGQLVNTL 446
>gi|229546565|ref|ZP_04435290.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
faecalis TX1322]
gi|307274683|ref|ZP_07555855.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX2134]
gi|307284510|ref|ZP_07564672.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0860]
gi|307296382|ref|ZP_07576206.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0411]
gi|422686206|ref|ZP_16744412.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX4000]
gi|229308310|gb|EEN74297.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
faecalis TX1322]
gi|306496037|gb|EFM65622.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0411]
gi|306503187|gb|EFM72441.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0860]
gi|306508612|gb|EFM77710.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX2134]
gi|315029097|gb|EFT41029.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX4000]
Length = 504
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 146/310 (47%), Gaps = 58/310 (18%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR G +++ +H+++ + H P I+AA+ +R +++ +V+PY
Sbjct: 177 YRNKAQIPVRKIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPY 236
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEK-SPNS----DKLES 214
+E D TG+LR++ + Y G++ + L+ +R K P S D LE+
Sbjct: 237 NESDNTGNLRHIVV-----------RRGYHTGEMMVVLI--TRTPKLFPISKIVPDILEA 283
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
+ E + S+ N NVIFG+ L G + + + ++
Sbjct: 284 IPEVV--------------SIVQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISA 329
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
SF Q N + +++ +K+++Y + V D Y G G IGL+L A+ + V +E+ +
Sbjct: 330 RSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTL--AQDAKQVYGIEVIE 387
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSI-------EPLSWLVGS----DVLVVDPPRK 381
E+ K + N +N +N+ E L LV + DV+VVDPPRK
Sbjct: 388 EA-----------VKDAENNAKLNNIENATFTAGLAEELLPKLVENGLQPDVVVVDPPRK 436
Query: 382 GLDSSLVHAL 391
GLD LV+ L
Sbjct: 437 GLDGQLVNTL 446
>gi|404496828|ref|YP_006720934.1| TrmA family RNA methyltransferase [Geobacter metallireducens GS-15]
gi|78194433|gb|ABB32200.1| RNA methyltransferase, TrmA family [Geobacter metallireducens
GS-15]
Length = 493
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 102/370 (27%), Positives = 160/370 (43%), Gaps = 43/370 (11%)
Query: 38 LDPPAANLPSLTCAL----QCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGL-LDFTF 92
L P + S +C CP G + L R ++ E F + +D
Sbjct: 75 LSPSPDRMASPSCTTSACSNCPLISMNYGA--QLTLKRSLVEKEIRSFASLRAVPIDDVI 132
Query: 93 DSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIK 152
S R +R AKL V GT SP+IG+Y+ +HNVVDI C H+P IN V ++GI+
Sbjct: 133 SSPRPLQYRNSAKLVVAGTFKSPIIGIYRRNSHNVVDISACPLHNPLINRVVAAAKEGIR 192
Query: 153 ELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL 212
+ V Y+ TG LRY+ + V+ + G+ V R + +++
Sbjct: 193 KGKVPVYNPRTDTGILRYLVVRVSEH-----------TGRAMAVFVTAQR-----SYNEI 236
Query: 213 ESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISL 272
LA+F+ R + N TS NVI L + E + GI S+
Sbjct: 237 HHLAKFV------RQAVPELDVAVQNVNTSEGNVILAPHDHFLTKDHAIIEELAGIRFSI 290
Query: 273 APSSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEI 330
+P SF Q N+ + I+ K++++ + V DLY G G G+SL A + V +E
Sbjct: 291 SPRSFFQVNSGSARIIYEKVREWSALTGNEKVVDLYCGIG--GISLFLAPGAQEVHGIEY 348
Query: 331 NKESQLSFEKTVSRLPKSVDG--NISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDS 385
+ E+ +RL +G N S+ D + + DV++ +PPRKG D
Sbjct: 349 VDAAVADAERN-ARL----NGIRNCSFEAGDAAELLEELVEEGTEPDVVIFNPPRKGCDR 403
Query: 386 SLVHALQSIG 395
++ A + G
Sbjct: 404 RVLEAAVNSG 413
>gi|422699326|ref|ZP_16757197.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1346]
gi|315172186|gb|EFU16203.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1346]
Length = 504
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 146/310 (47%), Gaps = 58/310 (18%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR G +++ +H+++ + H P I+AA+ +R +++ +V+PY
Sbjct: 177 YRNKAQIPVRKIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPY 236
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEK-SPNS----DKLES 214
+E D TG+LR++ + Y G++ + L+ +R K P S D LE+
Sbjct: 237 NESDNTGNLRHIVV-----------RRGYHTGEMMVVLI--TRTPKLFPISKIVPDILEA 283
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
+ E + S+ N NVIFG+ L G + + + ++
Sbjct: 284 IPEVV--------------SIVQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISA 329
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
SF Q N + +++ +K+++Y + V D Y G G IGL+L A+ + V +E+ +
Sbjct: 330 RSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTL--AQDAKQVYGIEVIE 387
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSI-------EPLSWLVGS----DVLVVDPPRK 381
E+ K + N +N +N+ E L LV + DV+VVDPPRK
Sbjct: 388 EA-----------VKDAENNAKLNNIENATFTAGLAEELLPKLVENGLQPDVVVVDPPRK 436
Query: 382 GLDSSLVHAL 391
GLD LV+ L
Sbjct: 437 GLDGQLVNTL 446
>gi|229548674|ref|ZP_04437399.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
faecalis ATCC 29200]
gi|312953113|ref|ZP_07771962.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0102]
gi|422691255|ref|ZP_16749292.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0031]
gi|422695590|ref|ZP_16753569.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX4244]
gi|422705735|ref|ZP_16763528.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0043]
gi|229306190|gb|EEN72186.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
faecalis ATCC 29200]
gi|310628947|gb|EFQ12230.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0102]
gi|315146955|gb|EFT90971.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX4244]
gi|315153976|gb|EFT97992.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0031]
gi|315156740|gb|EFU00757.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0043]
Length = 504
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 146/310 (47%), Gaps = 58/310 (18%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR G +++ +H+++ + H P I+AA+ +R +++ +V+PY
Sbjct: 177 YRNKAQIPVRKIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPY 236
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEK-SPNS----DKLES 214
+E D TG+LR++ + Y G++ + L+ +R K P S D LE+
Sbjct: 237 NESDNTGNLRHIVV-----------RRGYHTGEMMVVLI--TRTPKLFPISKIVPDILEA 283
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
+ E + S+ N NVIFG+ L G + + + ++
Sbjct: 284 IPEVV--------------SIVQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISA 329
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
SF Q N + +++ +K+++Y + V D Y G G IGL+L A+ + V +E+ +
Sbjct: 330 RSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTL--AQDAKQVYGIEVIE 387
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSI-------EPLSWLVGS----DVLVVDPPRK 381
E+ K + N +N +N+ E L LV + DV+VVDPPRK
Sbjct: 388 EA-----------VKDAENNAKLNNIENATFTAGLAEELLPKLVENGLQPDVVVVDPPRK 436
Query: 382 GLDSSLVHAL 391
GLD LV+ L
Sbjct: 437 GLDGQLVNTL 446
>gi|295114059|emb|CBL32696.1| 23S rRNA m(5)U-1939 methyltransferase [Enterococcus sp. 7L76]
Length = 457
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 146/310 (47%), Gaps = 58/310 (18%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR G +++ +H+++ + H P I+AA+ +R +++ +V+PY
Sbjct: 130 YRNKAQIPVRKIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPY 189
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEK-SPNS----DKLES 214
+E D TG+LR++ + Y G++ + L+ +R K P S D LE+
Sbjct: 190 NESDNTGNLRHIVV-----------RRGYHTGEMMVVLI--TRTPKLFPISKIVPDILEA 236
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
+ E + S+ N NVIFG+ L G + + + ++
Sbjct: 237 IPEVV--------------SIVQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISA 282
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
SF Q N + +++ +K+++Y + V D Y G G IGL+L A+ + V +E+ +
Sbjct: 283 RSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTL--AQDAKQVYGIEVIE 340
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSI-------EPLSWLVGS----DVLVVDPPRK 381
E+ K + N +N +N+ E L LV + DV+VVDPPRK
Sbjct: 341 EAV-----------KDAENNAKLNNIENATFTAGLAEELLPKLVENGLQPDVVVVDPPRK 389
Query: 382 GLDSSLVHAL 391
GLD LV+ L
Sbjct: 390 GLDGQLVNTL 399
>gi|227554844|ref|ZP_03984891.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
faecalis HH22]
gi|312900324|ref|ZP_07759635.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0470]
gi|312904253|ref|ZP_07763415.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0635]
gi|422688162|ref|ZP_16746321.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0630]
gi|422713668|ref|ZP_16770417.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0309A]
gi|422716409|ref|ZP_16773116.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0309B]
gi|422721325|ref|ZP_16777917.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0017]
gi|422736313|ref|ZP_16792577.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1341]
gi|227176013|gb|EEI56985.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
faecalis HH22]
gi|310632349|gb|EFQ15632.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0635]
gi|311292512|gb|EFQ71068.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0470]
gi|315031445|gb|EFT43377.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0017]
gi|315166923|gb|EFU10940.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1341]
gi|315575356|gb|EFU87547.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0309B]
gi|315578799|gb|EFU90990.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0630]
gi|315581386|gb|EFU93577.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0309A]
Length = 504
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 146/310 (47%), Gaps = 58/310 (18%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR G +++ +H+++ + H P I+AA+ +R +++ +V+PY
Sbjct: 177 YRNKAQIPVRKIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPY 236
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEK-SPNS----DKLES 214
+E D TG+LR++ + Y G++ + L+ +R K P S D LE+
Sbjct: 237 NESDNTGNLRHIVV-----------RRGYHTGEMMVVLI--TRTPKLFPISKIVPDILEA 283
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
+ E + S+ N NVIFG+ L G + + + ++
Sbjct: 284 IPEVV--------------SIVQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISA 329
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
SF Q N + +++ +K+++Y + V D Y G G IGL+L A+ + V +E+ +
Sbjct: 330 RSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTL--AQDAKQVYGIEVIE 387
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSI-------EPLSWLVGS----DVLVVDPPRK 381
E+ K + N +N +N+ E L LV + DV+VVDPPRK
Sbjct: 388 EA-----------VKDAENNAKLNNIENATFTAGLAEELLPKLVENGLQPDVVVVDPPRK 436
Query: 382 GLDSSLVHAL 391
GLD LV+ L
Sbjct: 437 GLDGQLVNTL 446
>gi|184155945|ref|YP_001844285.1| RNA methyltransferase [Lactobacillus fermentum IFO 3956]
gi|183227289|dbj|BAG27805.1| RNA methyltransferase [Lactobacillus fermentum IFO 3956]
Length = 458
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 153/337 (45%), Gaps = 58/337 (17%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+G+R +A++ VR P G Y+ G+H++V I P I+ V ++R +++ V
Sbjct: 128 FGYRNKAQVPVRMVKGQPTTGFYKRGSHDLVPIEDFYIQDPAIDQTVLVVRDLLRKYQVP 187
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
YDE+ G +R V + Y + +V + LV N E P+ ++ E
Sbjct: 188 AYDEETHRGVIRTVMV-----------RRGYYSHQVMVVLVTNG--EHFPHVAEITR--E 232
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
R G I S+ N NVI G + L GE +N+ GID +++P SF
Sbjct: 233 ISERVPG-------IKSIVQNVNDKRTNVILGTKNHLLWGEPTIHDNLLGIDFTISPLSF 285
Query: 278 GQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q N + + L + + S V D Y G G I SLA A+ + V VEI
Sbjct: 286 YQVNPQQTERLYQTAIENAGLDGSQTVIDAYCGIGTI--SLAVAKHAKHVYGVEI----- 338
Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPPR 380
+P ++ + + A+N IE +++VG DV++VDPPR
Sbjct: 339 ---------VPAAI-ADAKQNAANNGIENATFVVGKAEEQFAKWQAEGLKPDVVIVDPPR 388
Query: 381 KGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKR 417
KGLD+ L+ A + A +K +S + +++V++ +R
Sbjct: 389 KGLDAQLIEATGKM--APQKVIYVSCNPATLVRDLQR 423
>gi|449020052|dbj|BAM83454.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 578
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 118/435 (27%), Positives = 174/435 (40%), Gaps = 106/435 (24%)
Query: 47 SLTCALQCPHFQSCSGCTHE--FNLHRPIIVDEATDFF-KSIGL-LDFTFDSCRLYGWRC 102
SL + CPH+++C+GCT + RP I ++ FF ++ G L + + WR
Sbjct: 63 SLLRRIDCPHWEACAGCTLQDATAQARPPIFEQVATFFAETFGYQLPEPVVASSSHHWRT 122
Query: 103 RAKLAVRGT-------------STSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQ 149
AKLAVR S +P +GL++ GTH VV IP C+ HH +N A + L
Sbjct: 123 LAKLAVRCAPKTPHQNRVDKVRSWAPQLGLFRAGTHEVVAIPECQVHHAALNKAFKCLEC 182
Query: 150 GIKELNVEPYDEDD-RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVW--------- 199
+ V YDE R LRYVQ+AV ER R G+VQ+ LV
Sbjct: 183 VLARSAVAIYDERRPRLESLRYVQLAV----------ER-RTGRVQLVLVGYREPTSQPV 231
Query: 200 ---NSRNEKSPNSDKLESLAEFLWRNGGS-RSREHYIHSVWANFQTSTNNVIFGNRWRHL 255
R + S + L + LW G S++ HS+W + N IF +
Sbjct: 232 APSRRRTDASLLTPTWRMLCDQLWEEGKRFGSKQQLWHSIWVHMHAGRGNAIFASAHEAS 291
Query: 256 LGETDFWENVGG-----IDISLA----------PSSFGQANTRAFDILLRKL-------- 292
ET W+ V G ID LA P +F QAN A+ +L +
Sbjct: 292 QTETAQWQQVYGDAPFIIDEPLAGEPGPVMVLPPFAFQQANLTAYRAMLPLIGFWCMQPL 351
Query: 293 ---------------QKYVPYGAS-------VTDLYAGAGVIGLSLAAARKCRSVK---- 326
Q V AS + + AG G IGLS+ R+ + +
Sbjct: 352 PSSVQRRCNVAAMTSQPQVGTVASRSMPVLRIAEFCAGVGSIGLSV--VRQMQQLPNAPA 409
Query: 327 -----CVEINKESQLSFEKTVSR---LPKSVDGNISWHNADNSIEPLSWL-----VGSDV 373
+I+ Q++F +T R L + V + S+ L+ V + +
Sbjct: 410 HIYLWASDIHPGGQVAFWETARRNGLLDERVRSALELRYQVGSLTALAQRVHDPKVAASI 469
Query: 374 LVVDPPRKGLDSSLV 388
++ DPPR GL +
Sbjct: 470 VIADPPRAGLGPVFI 484
>gi|312623225|ref|YP_004024838.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor
kronotskyensis 2002]
gi|312203692|gb|ADQ47019.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor
kronotskyensis 2002]
Length = 451
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/377 (23%), Positives = 161/377 (42%), Gaps = 81/377 (21%)
Query: 53 QCPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDFTFDSC----RLYGWR 101
+CP++ C GC H+ +L + ++ D F+ IG L + + +R
Sbjct: 71 ECPYYDFCGGCHLMHAKYQHQLSLKKLLV----EDAFRRIGKLSPKINDVIGMENPFRYR 126
Query: 102 CRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDE 161
+ L V G P IG Y++ TH++VDI +C H + ++ ++ I++ +E YDE
Sbjct: 127 NKTALPVGGDYKKPQIGFYKKMTHDIVDIDYCLIQHEFCDNVIKGMKDLIRKHKIEVYDE 186
Query: 162 DDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNS--RNEKSPNSDKLESLAEFL 219
G LR++ S +E + + LV N ++ +D L+ E
Sbjct: 187 KKHKGVLRHI-----VVRNSFAFNE------MMLILVCTKVPENLEAIKNDILDKFPE-- 233
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
I S + N NVI G + G + + +G + ++P SF Q
Sbjct: 234 ------------IKSFFVNLNPKRTNVILGEEDILIWGNSTIKDKIGNLTFEISPKSFFQ 281
Query: 280 ANTRAFDILLRKLQKYV--PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
N+ ++L R++ KY+ V D+Y+G G I S+ AR C+ V +E+ +++
Sbjct: 282 VNSVQTEVLYRQVVKYLRNIEAEVVFDIYSGIGTI--SMFVARFCKKVYAIELVRDAVED 339
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPPRKG 382
+K+ + +NSI + ++ GS +++DPPR G
Sbjct: 340 AKKS---------------SKNNSISNIEFICGSAEIEIPKLLKSGIIPQAVILDPPRSG 384
Query: 383 -----LDSSLVHALQSI 394
L+S + H +Q+I
Sbjct: 385 CEKQLLESLIEHKIQNI 401
>gi|423681138|ref|ZP_17655977.1| RNA methyltransferase YefA [Bacillus licheniformis WX-02]
gi|383442244|gb|EID49953.1| RNA methyltransferase YefA [Bacillus licheniformis WX-02]
Length = 460
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/353 (24%), Positives = 151/353 (42%), Gaps = 42/353 (11%)
Query: 54 CPHFQSCSGCT-HEFNLHRPIIVDE--ATDFFKSIGLLDF-------TFDSCRLYGWRCR 103
CP ++ C GC N ++ + D + IG LD T + +R +
Sbjct: 77 CPIYKQCGGCQLQHINYEGQLLYKQKQVKDVLERIGKLDLSRITVHPTLGMEDPWNYRNK 136
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A++ V + G YQ+ +H ++D+ C + V+ +++ + ++ Y+E+
Sbjct: 137 AQVPVGEREGGLIAGFYQQRSHEIIDMNECLIQQSENDRVVQAIKEICGKYGIKAYNEER 196
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL--ESLAEFLWR 221
G LR++ + RY ++ +V+ +R P+ K+ E A F
Sbjct: 197 HKGWLRHIMV-------------RYGAATGEMMVVFITRTNDFPHKAKIVEEITAAF--- 240
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ S+ N NVIFG+ +LGE ++ +GGI +++ SF Q N
Sbjct: 241 --------PHVKSIVQNINPKKTNVIFGDETTVILGEEYIYDTIGGIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L K +Y +V D Y G G I L L A++ + V VEI E+ +
Sbjct: 293 PEQTKVLYDKALEYAELNGEETVIDAYCGIGTISLFL--AKQAKKVYGVEIVPEA-IEDA 349
Query: 340 KTVSRLPKSVDGNISWHNADNSI-EPLSWLVGSDVLVVDPPRKGLDSSLVHAL 391
K + L + A+ I E + +D LVVDPPRKG D +L+ +
Sbjct: 350 KRNAELNGIENAEFEVGEAETVIPEWYEEGIAADTLVVDPPRKGCDEALLRTI 402
>gi|311067291|ref|YP_003972214.1| RNA methyltransferase [Bacillus atrophaeus 1942]
gi|419823516|ref|ZP_14347061.1| putative RNA methyltransferase [Bacillus atrophaeus C89]
gi|310867808|gb|ADP31283.1| putative RNA methyltransferase [Bacillus atrophaeus 1942]
gi|388472304|gb|EIM09082.1| putative RNA methyltransferase [Bacillus atrophaeus C89]
Length = 466
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 88/369 (23%), Positives = 157/369 (42%), Gaps = 67/369 (18%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIV---DEATDFFKSIGLLDFTFDSCRLYGWRCR 103
CP ++ C GC T + R I++ + T F + T + +R +
Sbjct: 82 CPVYEQCGGCQLQHLAYTQQLREKRDIVIQSLERHTKFKVEDMNIKETIGMDNPWNYRNK 141
Query: 104 AKLAV-RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
++ + R S S + GLY +HN+V I CK HP N ++R+ +++ NV Y+E
Sbjct: 142 SQFQIGRSQSGSIIAGLYGMDSHNIVPIKDCKVQHPATNKTTGIVRRILEDFNVSVYNER 201
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
R GD+R + V + G+VQ+ L+ + E P+ +++ +
Sbjct: 202 KRKGDVRTIVTRVG-----------FETGEVQVVLI--TSKETLPHKEEIVQAIQ----- 243
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
R + S+ N + +VIFG++ + L G T E +G + L+ +F Q N
Sbjct: 244 ----KRLPEVKSIIQNVNGAKTSVIFGDKTKALAGNTVIQEVLGDVSFELSARAFFQLNP 299
Query: 283 RAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
L +++K V D Y G G IG+ +A K V+ +++ KES +K
Sbjct: 300 EQTVKLYDEVKKAAQLTGKEKVVDAYCGVGTIGMWVADGAK--EVRGMDVIKESIDDAKK 357
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPPRKGLDS 385
N H N+ +++ G+ DV++VDPPR G D+
Sbjct: 358 -----------NAKKHGMTNA----TYVTGTAEHWLPKWTKEGFRPDVVIVDPPRTGCDT 402
Query: 386 SLVHALQSI 394
+ + ++ +
Sbjct: 403 TFLDTIKKV 411
>gi|152974246|ref|YP_001373763.1| RNA methyltransferase [Bacillus cytotoxicus NVH 391-98]
gi|152022998|gb|ABS20768.1| RNA methyltransferase, TrmA family [Bacillus cytotoxicus NVH
391-98]
Length = 458
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 91/375 (24%), Positives = 154/375 (41%), Gaps = 81/375 (21%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVDEATDFFK---------SIGLLDFTFDSCRL 97
CP + C GC + N R I+V + K ++G+ D
Sbjct: 79 CPVYDKCGGCQLQHLDYEEQLNQKRDIVVQAFQKYMKNSLEEKIRPTLGMKD-------P 131
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+ +R +++L V + GLY++ +H ++DI HC H N A +++R+ +++LN+
Sbjct: 132 WHYRNKSQLQVGRKDEKVITGLYEQNSHRLIDIAHCMIQHKATNEATKVVRRILEKLNIS 191
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
Y+E G +R + V + G+VQITL+ + ++ PN ++ +AE
Sbjct: 192 IYNERKGKGLIRTIVTRVAV-----------QTGEVQITLI--TAKDEFPNKEQF--IAE 236
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
+ + + S+ N +VIFG++ HL G+ E +G + L+ +F
Sbjct: 237 V-------QKQMPAVKSIMQNVNGRKTSVIFGDKTFHLAGKEVIQETLGDLSFELSARAF 289
Query: 278 GQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q N +L + +K + D Y G G IGL L A V+ +++ E+
Sbjct: 290 FQLNPEQTVVLYNEAKKAAALTGKEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAI 347
Query: 336 LSFEKTVSR----------------LPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPP 379
K R LPK V WH DV+VVDPP
Sbjct: 348 ADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE--GWH--------------PDVIVVDPP 391
Query: 380 RKGLDSSLVHALQSI 394
R G D L+ + +
Sbjct: 392 RTGCDDKLLETILKV 406
>gi|392530335|ref|ZP_10277472.1| RNA methyltransferase [Carnobacterium maltaromaticum ATCC 35586]
Length = 458
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 93/356 (26%), Positives = 155/356 (43%), Gaps = 47/356 (13%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRC 102
C +++C GC + + R +++ ++ + FK G F T + +R
Sbjct: 77 CDVYEACGGCQLQHLAYDKQLDFKRDMVL-QSLEKFKPAGYEKFDLRPTIGMDDPWRYRN 135
Query: 103 RAKLAVRGTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDE 161
+A+ VR T + +I GLY EGTH +VDI +C P +++++ + EL + Y+E
Sbjct: 136 KAQFQVRMTEENQIIAGLYGEGTHKLVDINNCIVQRPETTKVIQVVKGLLAELEIPIYNE 195
Query: 162 DDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
+G ++ + V + G+VQ+ LV NS+ K P + + L
Sbjct: 196 IKHSGIVKTIVCRVGI-----------QTGEVQLVLVTNSK--KLPKKRQFLEQIKILLP 242
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
+ S+ N +++ G HL G+ E + L+ +F Q N
Sbjct: 243 E---------VVSIMQNVNQEKTSLVMGEETIHLAGKNSITEKLDDFAFDLSARAFFQLN 293
Query: 282 TRAFDILL---RKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSF 338
+L RK K P ++ D Y G G IGLSL A++ + V+ ++I E+
Sbjct: 294 PEQTAVLYDEARKALKLAP-NETLVDAYCGVGTIGLSL--AKEAKEVRGMDIIPEAIEDA 350
Query: 339 EKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
K +L +D S+ PL W+ D LVVDPPR GLD L+ A+
Sbjct: 351 TKNAKKL--GLDHVRYEVGKAESLLPL-WMKRGFKPDALVVDPPRTGLDRELIKAI 403
>gi|417885057|ref|ZP_12529217.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus oris
F0423]
gi|341596646|gb|EGS39240.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus oris
F0423]
Length = 492
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 92/364 (25%), Positives = 167/364 (45%), Gaps = 43/364 (11%)
Query: 65 HEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGLY 120
+ R +++D F + G ++ T ++ Y +R +A+ VR GLY
Sbjct: 129 QQLAFKRQVVLDSLAKF-QPYGYRNYDVRRTIEAPEEYHYRNKAQFQVRMVDGHVAAGLY 187
Query: 121 QEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNT 180
+ +H++VD+ C PR V + Q I++L + YDED +G ++
Sbjct: 188 KPNSHDLVDMQECAVQMPRTMKVVRTVVQLIEDLQIPVYDEDHNSGIIK----------- 236
Query: 181 SLPASERYRNGKVQITLVWNSRN--EKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWAN 238
++ E + G++Q+TL+ N+ K P LE++A+ L + SV N
Sbjct: 237 TIVVRESWTTGELQLTLITNTPKLIHKRPF---LEAIAQQLPE----------VVSVMQN 283
Query: 239 FQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPY 298
+++G + HL G+ E++ G+D L+ SF Q N ++L + + +
Sbjct: 284 VNPGDTPLVWGEQMIHLAGKETITESLMGLDFELSARSFLQLNPEQTEVLYEQAAEALEL 343
Query: 299 GA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWH 356
++ D YAG G IGLSLA+ + ++V+ +E+ E+ ++ ++L +
Sbjct: 344 APEDTLIDAYAGIGTIGLSLAS--RVKAVRGMEVIPEA-VADANANAKLNGITNAQYEVG 400
Query: 357 NADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVK 413
A+ + WL + D LVVDPPR GLD L+ Q + RK +S +S+ +
Sbjct: 401 KAEELMP--RWLDEGLQFDALVVDPPRTGLDDELIK--QILRVKPRKFAYVSCGMASLAR 456
Query: 414 EEKR 417
+R
Sbjct: 457 NLRR 460
>gi|257080993|ref|ZP_05575354.1| RNA methyltransferase [Enterococcus faecalis E1Sol]
gi|256989023|gb|EEU76325.1| RNA methyltransferase [Enterococcus faecalis E1Sol]
Length = 457
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 145/310 (46%), Gaps = 58/310 (18%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR G +++ +H+++ + H P I+AA+ +R ++ +V+PY
Sbjct: 130 YRNKAQIPVRKIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRRYSVKPY 189
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEK-SPNS----DKLES 214
+E D TG+LR++ + Y G++ + L+ +R K P S D LE+
Sbjct: 190 NESDNTGNLRHIVV-----------RRGYHTGEMMVVLI--TRTPKLFPISKIVPDILEA 236
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
+ E + S+ N NVIFG+ L G + + + ++
Sbjct: 237 IPEVV--------------SIVQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISA 282
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
SF Q N + +++ +K+++Y + V D Y G G IGL+L A+ + + +E+ +
Sbjct: 283 RSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTL--AQDAKQIYGIEVIE 340
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSI-------EPLSWLVGS----DVLVVDPPRK 381
E+ K + N +N +N+ E L LV + DV+VVDPPRK
Sbjct: 341 EAV-----------KDAENNAKLNNIENATFTAGLAEELLPKLVENGLQPDVVVVDPPRK 389
Query: 382 GLDSSLVHAL 391
GLD LV+ L
Sbjct: 390 GLDGQLVNTL 399
>gi|210621791|ref|ZP_03292820.1| hypothetical protein CLOHIR_00765 [Clostridium hiranonis DSM 13275]
gi|210154555|gb|EEA85561.1| hypothetical protein CLOHIR_00765 [Clostridium hiranonis DSM 13275]
Length = 456
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 88/350 (25%), Positives = 154/350 (44%), Gaps = 38/350 (10%)
Query: 57 FQSCSGCT---HEFNLHRPIIVDEATDFFKSIGLLD--FTFDSCRL---YGWRCRAKLAV 108
+ C GC ++N + +E IG ++ D+ + + +R +A+ V
Sbjct: 80 LKMCGGCQIQELDYNKQLELKTNEVKQVISRIGKIEGATIHDTIGMETPFRYRNKAQFPV 139
Query: 109 RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDL 168
+ P+IG Y++ +H V+ C H + +E++R+ I E N+ YDE G L
Sbjct: 140 QMRKGEPVIGFYKKKSHEVIPTAKCMIQHELNDEIIEVVREFIVENNISVYDEVKHKGLL 199
Query: 169 RYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSR 228
R++ + + G+V + LV N +N PN +KL + E R
Sbjct: 200 RHIVTKIG-----------FTTGEVMVVLVANGKN--IPNVNKLAKMLE---------ER 237
Query: 229 EHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDIL 288
++ N T+ NVI G + + G + +G + ++P SF Q N ++L
Sbjct: 238 IKGFKTLVVNVNTNKTNVILGRENKVICGTGKINDYIGNLVFEISPLSFFQVNPVQTEVL 297
Query: 289 LRKLQKY--VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLP 346
K +Y + +V D+Y G G I L L A+K + V +EI E + K + L
Sbjct: 298 YNKALEYANLTGNETVFDIYCGIGTISLFL--AQKAKKVYGIEI-VEDAIKDAKRNAEL- 353
Query: 347 KSVDGNISWHNADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHALQSI 394
++ + + P + G +DV+VVDPPRKG D ++ + S+
Sbjct: 354 NGLENTEFYAGKAEEVVPKMYKEGKKADVVVVDPPRKGCDEKVLDTIVSM 403
>gi|28212064|ref|NP_783008.1| tRNA (uracil-5-) -methyltransferase [Clostridium tetani E88]
gi|50401759|sp|Q891A0.1|Y2481_CLOTE RecName: Full=Uncharacterized RNA methyltransferase CTC_02481
gi|28204507|gb|AAO36945.1| tRNA (uracil-5-) -methyltransferase [Clostridium tetani E88]
Length = 460
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 94/392 (23%), Positives = 162/392 (41%), Gaps = 85/392 (21%)
Query: 33 PSSLPLDPPAANLPSLTCALQCPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSI 85
PS+ ++PP C + C GC + N R + D +
Sbjct: 68 PSANRVEPP------------CDIYTKCGGCQLQHMSYKEQLNFKR----QKVKDALLRL 111
Query: 86 GLLDFTFDSC----RLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRIN 141
G +D + Y +R + +L + IG Y +HN++D+ C + +
Sbjct: 112 GGIDVEVEEVLGMENPYRYRNKVQLPIGKEKGKVNIGFYAPRSHNIIDLKSCFIQDEKAD 171
Query: 142 AAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNS 201
+++L++ I++ NV YDE + G+LR++ + +R G++ I LV +
Sbjct: 172 KIIKILKEWIEKFNVSIYDEKEHKGNLRHIMVRTA-----------FRTGQIMIVLV--T 218
Query: 202 RNEKSPNSDKL-ESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETD 260
+++K P+ ++L L E L + S+ N + NV+ G L G+
Sbjct: 219 KDKKLPHKEELINKLTEDL----------EGVVSIIQNMNSQKTNVVLGKESIVLWGKDK 268
Query: 261 FWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAA 318
+ +G ++ P SF Q N ++L K +Y V D Y G G I L L
Sbjct: 269 IIDYIGNFKFAITPLSFFQVNPIQTEVLYNKALEYADLKGDEVVFDAYCGTGTISLFL-- 326
Query: 319 ARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVG-------- 370
++K + V VEI V+ +S N +N DN + ++VG
Sbjct: 327 SQKAKKVYGVEI-----------VNEAIESAKLNARENNVDN----VDFIVGESEQIIPE 371
Query: 371 -------SDVLVVDPPRKGLDSSLVHALQSIG 395
+DV+VVDPPRKG + SL+ A+ +
Sbjct: 372 LIEKGIKADVVVVDPPRKGCEKSLLEAMAKMA 403
>gi|332983359|ref|YP_004464800.1| 23S rRNA m(5)U-1939 methyltransferase [Mahella australiensis 50-1
BON]
gi|332701037|gb|AEE97978.1| 23S rRNA m(5)U-1939 methyltransferase [Mahella australiensis 50-1
BON]
Length = 456
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 86/344 (25%), Positives = 149/344 (43%), Gaps = 32/344 (9%)
Query: 54 CPHFQSCSGC---THEFNLHRPIIVDEATDFFKSIGLLDF-----TFDSCRLYGWRCRAK 105
CP C GC ++ D + IG D T R + +R +A+
Sbjct: 75 CPVANRCGGCHIQAMAYDAQLAYKTRHVKDALQRIGGFDDVSVLDTIGMERPWHYRNKAQ 134
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
L V S P++G + GTH++VDI C HP ++AA++ ++ + NV YDE
Sbjct: 135 LPVGVFSGRPVMGFFAAGTHDIVDIDTCPIQHPAVDAAIKAVKDYVSSYNVAVYDEMTGK 194
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGS 225
G LR++ + V + +G+V + V N + P++ + +
Sbjct: 195 GLLRHIMVRVG-----------FNSGQVMVVPVING--DSIPHAKEFTDML--------- 232
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
R + SV N NVI G++ + + G + + G+ ++P SF Q N R
Sbjct: 233 RQNIDGLASVVLNINRRRTNVILGSQCKVIYGNDHIMDTLCGLTFKISPLSFFQVNPRQT 292
Query: 286 DILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRL 345
++L K +Y + T L A G+ +SL AA+K + +E + + + +RL
Sbjct: 293 EVLYTKAIEYAGLDGTQTVLDAYCGIGTISLIAAQKAAKIYGIE-EIQQAVDDARENARL 351
Query: 346 PKSVDGNISWHNADNSI-EPLSWLVGSDVLVVDPPRKGLDSSLV 388
+ A+++I + V DV+++DPPRKG D +
Sbjct: 352 NDISNVEFICAKAEDAIGRFIEDKVRIDVIIMDPPRKGCDKGFL 395
>gi|403669961|ref|ZP_10935137.1| RNA methyltransferase [Kurthia sp. JC8E]
Length = 453
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 91/351 (25%), Positives = 149/351 (42%), Gaps = 37/351 (10%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDFTFDSCRL----YGWRCRAKL 106
CP F SC GC + + + D + IG LD T + + +R +A++
Sbjct: 75 CPVFNSCGGCQLQHLSYEGQLAWKQKMVQDVMQRIGKLDVTVHPTKGMEEPWNYRNKAQI 134
Query: 107 AVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTG 166
P+ G Y+ +H +VD C +A + L+ + L ++PYDE + G
Sbjct: 135 PFGMNGEVPIAGFYKTKSHAIVDTERCLIQTDEADAILSGLKPKLWALGLQPYDEYTKRG 194
Query: 167 DLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSR 226
LR+V + R ++ +V ++ K P D + L N
Sbjct: 195 QLRHVVV-------------RKARATNEVMVVLVTKKRKFPQKDAVVDTIRQLIPN---- 237
Query: 227 SREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFD 286
+ S+ N NVIFGN +L GET +++G + ++ SF Q N +
Sbjct: 238 -----VKSIMQNVNPDNTNVIFGNETVNLWGETTIEDHIGDVRFEISARSFYQVNPIQTE 292
Query: 287 ILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR 344
+L ++ Y +V D Y G G I L L A+ + V VEI ++ + K +
Sbjct: 293 VLYKQALDYAALTGNETVIDAYCGIGTISLFL--AKNAKHVMGVEIVPQA-IEDAKRNAT 349
Query: 345 LPKSVDGNISWHNADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHALQS 393
L + A+ I P + G +DVL+VDPPRKG D++L+ + S
Sbjct: 350 LNGFTNTYFEAGPAEEVI-PRWFKEGKEADVLMVDPPRKGCDNALLETILS 399
>gi|387819647|ref|YP_005679994.1| TrmA family RNA methyltransferase [Clostridium botulinum H04402
065]
gi|322807691|emb|CBZ05266.1| RNA methyltransferase, TrmA family [Clostridium botulinum H04402
065]
Length = 467
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 88/369 (23%), Positives = 156/369 (42%), Gaps = 73/369 (19%)
Query: 54 CPHFQSCSGCT---HEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRL---------YGWR 101
CP ++ C GC + + D + IG LD D ++ Y +R
Sbjct: 77 CPIYKQCGGCQVQHYSYKAQLEFKKQRVIDSLERIGKLDI--DKIKIEDTIGMENPYRYR 134
Query: 102 CRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDE 161
+ ++ VR IG Y+ TH V D+ C + + ++++R + + N+ Y+E
Sbjct: 135 NKIQMPVRFEKGEIKIGFYKSRTHEVADVKECFIQDEQADKIIQIIRNWMVKYNISAYNE 194
Query: 162 DDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL--ESLAEFL 219
+ G +R++ + + ++N ++ + +V N + E+ P ++L E + EF
Sbjct: 195 ETGKGFIRHIMV-----------RKAFKNKELMLVIVTN-KEEEIPYKEELINEVIKEF- 241
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
I S+ N T NVI G + L G+ + + +++P SF Q
Sbjct: 242 ----------SNIKSIIQNINTKKTNVILGEKCITLWGKDTITDYIDKFKFNISPLSFFQ 291
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
N ++L +K ++ V D Y G G I L L ++K + V VEI KE
Sbjct: 292 VNPIQTEVLYKKALEFANLKGEEIVFDAYCGTGTISLFL--SQKAKKVYAVEIIKE---- 345
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWLVG---------------SDVLVVDPPRKG 382
++D N + +N I+ + VG +DV+VVDPPRKG
Sbjct: 346 ----------AID-NAKDNAKENKIDNAEFFVGKSEEVIPDLIDKGIKADVVVVDPPRKG 394
Query: 383 LDSSLVHAL 391
+ +L+ A+
Sbjct: 395 CEKTLLEAI 403
>gi|255657938|ref|ZP_05403347.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Mitsuokella multacida
DSM 20544]
gi|260850131|gb|EEX70138.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Mitsuokella multacida
DSM 20544]
Length = 457
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 93/359 (25%), Positives = 154/359 (42%), Gaps = 51/359 (14%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGL-LDFTFDSCRLYGWRCRAK 105
CP ++ C GC + R ++D T L ++ T + + +R + +
Sbjct: 77 CPIYEQCGGCQLQHLDYMAQLKAKRQQVIDAVTRIGGQKDLFVEPTLGAESPWNYRNKMQ 136
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
+ +IG + +GTH ++D C N V +R I EL + Y+ED T
Sbjct: 137 FPIGRCKGKTVIGCFAQGTHEIIDTRDCHIQKEGNNEIVNAVRDIITELRIPVYNEDRHT 196
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGS 225
G LR+V V G++ + +V ++ +L EF+
Sbjct: 197 GVLRHVVGRVG------------EKGELMVVIVTATK--------QLPREKEFVK---AL 233
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
R R ++ S+ N QT NNVI G L G+ + +G + ++P SF Q NT+
Sbjct: 234 RKRLPHVVSIHQNIQTYRNNVIMGRETNLLWGKPTILDRIGRLTFHISPRSFFQVNTKQA 293
Query: 286 DILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
++L K ++ +V D Y G G I L L A+K R V +EI K + L +K
Sbjct: 294 EVLYNKALEFANLKGEETVIDAYCGTGTITLFL--AQKAREVYGIEIVKPAILDAQKNAR 351
Query: 344 RLPKSVDGNISWHNAD----NSIEPLSWL----VGSDVLVVDPPRKGLDSSLVHALQSI 394
D N+ NA+ ++ E + L V +DV+VVDPPR G +++ ++
Sbjct: 352 ------DNNV--RNAEFIVGDATEVMPRLYKQGVRADVVVVDPPRAGCTETVLKTFANM 402
>gi|170754817|ref|YP_001783005.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
B1 str. Okra]
gi|169120029|gb|ACA43865.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
B1 str. Okra]
Length = 461
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 93/375 (24%), Positives = 159/375 (42%), Gaps = 85/375 (22%)
Query: 54 CPHFQSCSGCT---------HEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRL------- 97
CP ++ C GC EF R I D + IG LD D ++
Sbjct: 77 CPIYKQCGGCQVQHYSYKAQLEFKKQRVI------DSLERIGKLDI--DKIKIEDTIGME 128
Query: 98 --YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELN 155
Y +R + ++ VR IG Y+ TH V D+ C + + ++++R + + N
Sbjct: 129 NPYRYRNKIQMPVRFEKGEIKIGFYKSRTHEVADVKECFIQDEQADKIIQIIRNWMVKHN 188
Query: 156 VEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL--E 213
+ Y+E+ G +R++ + + ++N ++ + +V N + E+ P ++L E
Sbjct: 189 ISAYNEETGKGFIRHIMV-----------RKAFKNKELMLVIVTN-KEEEIPYKEELINE 236
Query: 214 SLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLA 273
+ EFL I S+ N T NVI G + L G+ + + +++
Sbjct: 237 VIKEFL-----------NIKSIIQNINTKKTNVILGEKCITLWGKDTITDYIDKFKFNIS 285
Query: 274 PSSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEIN 331
P SF Q N ++L +K ++ V D Y G G I L L ++K + V VEI
Sbjct: 286 PLSFFQVNPIQTEVLYKKALEFANLKGEEIVFDAYCGTGTISLFL--SQKAKKVYGVEII 343
Query: 332 KESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVG---------------SDVLVV 376
KE ++D N + +N I+ + VG +DV+VV
Sbjct: 344 KE--------------AID-NAKDNAKENRIDNAEFFVGKSEEVIPDLIDKGIKADVVVV 388
Query: 377 DPPRKGLDSSLVHAL 391
DPPRKG + +L+ A+
Sbjct: 389 DPPRKGCEKTLLEAI 403
>gi|222094222|ref|YP_002528279.1| RNA methyltransferase, trma family [Bacillus cereus Q1]
gi|221238277|gb|ACM10987.1| RNA methyltransferase, TrmA family [Bacillus cereus Q1]
Length = 459
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 89/358 (24%), Positives = 159/358 (44%), Gaps = 47/358 (13%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRL---YGWRCR 103
CP ++ C GC + N R I+V +A + + GL + + + + +R +
Sbjct: 80 CPVYEECGGCQLQHLDYKEQLNQKRDIVV-QAFQKYMNNGLEEKILPTLGMENPWHYRNK 138
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
++L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E
Sbjct: 139 SQLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKK 198
Query: 164 RTGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
+ G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 199 QKGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--IAEV--- 238
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ----QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLN 294
Query: 282 TRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L + +K + + D Y G G IGL L A V+ +++ E+
Sbjct: 295 PEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIADAR 352
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
K R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 353 KNAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|422732009|ref|ZP_16788355.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0645]
gi|422738857|ref|ZP_16794043.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX2141]
gi|315145231|gb|EFT89247.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX2141]
gi|315161930|gb|EFU05947.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0645]
Length = 468
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 146/310 (47%), Gaps = 58/310 (18%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR G +++ +H+++ + H P I+AA+ +R +++ +V+PY
Sbjct: 141 YRNKAQIPVRKIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPY 200
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEK-SPNS----DKLES 214
+E D +G+LR++ + Y G++ + L+ +R K P S D LE+
Sbjct: 201 NESDNSGNLRHIVV-----------RRGYHTGEMMVVLI--TRTPKLFPISKIVPDILEA 247
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
+ E + S+ N NVIFG+ L G + + + ++
Sbjct: 248 IPEVV--------------SIVQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISA 293
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
SF Q N + +++ +K+++Y + V D Y G G IGL+L A+ + V +E+ +
Sbjct: 294 RSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLNL--AQDAKQVYGIEVIE 351
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSI-------EPLSWLVGS----DVLVVDPPRK 381
E+ K + N +N +N+ E L LV + DV+VVDPPRK
Sbjct: 352 EAV-----------KDAENNAKLNNIENATFTAGLAEELLPKLVENGLQPDVVVVDPPRK 400
Query: 382 GLDSSLVHAL 391
GLD LV+ L
Sbjct: 401 GLDGQLVNTL 410
>gi|300861732|ref|ZP_07107812.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TUSoD Ef11]
gi|428766255|ref|YP_007152366.1| RNA methyltransferase, TrmA family [Enterococcus faecalis str.
Symbioflor 1]
gi|300848257|gb|EFK76014.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TUSoD Ef11]
gi|427184428|emb|CCO71652.1| RNA methyltransferase, TrmA family [Enterococcus faecalis str.
Symbioflor 1]
Length = 457
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 146/310 (47%), Gaps = 58/310 (18%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR G +++ +H+++ + H P I+AA+ +R +++ +V+PY
Sbjct: 130 YRNKAQIPVRKIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPY 189
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEK-SPNS----DKLES 214
+E D +G+LR++ + Y G++ + L+ +R K P S D LE+
Sbjct: 190 NESDNSGNLRHIVV-----------RRGYHTGEMMVVLI--TRTPKLFPISKIVPDILEA 236
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
+ E + S+ N NVIFG+ L G + + + ++
Sbjct: 237 IPEVV--------------SIVQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISA 282
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
SF Q N + +++ +K+++Y + V D Y G G IGL+L A+ + V +E+ +
Sbjct: 283 RSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLNL--AQDAKQVYGIEVIE 340
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSI-------EPLSWLVGS----DVLVVDPPRK 381
E+ K + N +N +N+ E L LV + DV+VVDPPRK
Sbjct: 341 EAV-----------KDAENNAKLNNIENATFTAGLAEELLPKLVENGLQPDVVVVDPPRK 389
Query: 382 GLDSSLVHAL 391
GLD LV+ L
Sbjct: 390 GLDGQLVNTL 399
>gi|217967096|ref|YP_002352602.1| TrmA family RNA methyltransferase [Dictyoglomus turgidum DSM 6724]
gi|217336195|gb|ACK41988.1| RNA methyltransferase, TrmA family [Dictyoglomus turgidum DSM 6724]
Length = 448
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 94/356 (26%), Positives = 149/356 (41%), Gaps = 45/356 (12%)
Query: 50 CALQCPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDFTFDSC----RLY 98
C C F C GC ++ L R I+ D FK IG ++ Y
Sbjct: 68 CEPACNVFYQCGGCHLMHVNYGYQLELKRMIV----EDAFKRIGKIEKEISPVIGMENPY 123
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +AK+ V ++G Y+ TH++VDI C H + +E ++ IK+ ++E
Sbjct: 124 RYRNKAKIPVGKRRGKVVLGFYKPNTHHIVDISGCIVQHEDADKVIETTKEAIKKFHIEV 183
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
Y+E TG LR+V + + + + LV D + +A F
Sbjct: 184 YNELQHTGLLRFVVV-----------RRSFAFDDLMVVLVSKGM------IDNAKKIARF 226
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
R R + S + N N IFG R + GE + +G ++P SF
Sbjct: 227 Y------RYRLKNLKSFYININPKRTNEIFGEESRLIWGEEVIRDKIGEFIFEISPVSFF 280
Query: 279 QANTRAFDILLRKLQKYV-PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
Q N+ + L K +Y+ P V D Y G G I L L ++K V +E+ + +
Sbjct: 281 QINSIQTEKLYNKALEYLSPNSKLVFDAYCGIGTISLFL--SKKAEKVYGIEVERSAIED 338
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS--DVLVVDPPRKGLDSSLVHAL 391
K +R+ K + W ++ I P G D +V+DPPRKG D +L+ A+
Sbjct: 339 AWKN-ARINKVKNVEFIWGRSEEVI-PRLIEDGKIPDAIVLDPPRKGCDQNLLEAI 392
>gi|15613460|ref|NP_241763.1| RNA methyltransferase [Bacillus halodurans C-125]
gi|50401683|sp|Q9KEF5.1|Y897_BACHD RecName: Full=Uncharacterized RNA methyltransferase BH0897
gi|10173512|dbj|BAB04616.1| RNA methyltransferase [Bacillus halodurans C-125]
Length = 463
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 92/363 (25%), Positives = 149/363 (41%), Gaps = 58/363 (15%)
Query: 54 CPHFQSCSGC------------------THEFNLHRPIIVDEATDFFKSIGLLDFTFDSC 95
CP + C GC F H + D T +IG+ D
Sbjct: 80 CPVYDQCGGCQLQHLSYEATLKEKREIVKQAFERHTTLRADTLT-ILPTIGMED------ 132
Query: 96 RLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELN 155
+ +R +++L ++ GLY TH +VD+ C H N A E+++Q +++L
Sbjct: 133 -PWAYRNKSQLQLKTEKGQVKAGLYVMNTHKLVDLSSCLVQHDATNEASEVVKQIVQDLQ 191
Query: 156 VEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESL 215
+ Y+E RTG LR V V + G++Q+ LV ++ P D L +
Sbjct: 192 IPTYNERKRTGILRSVVSRVG-----------FETGELQVILVTTKKD--FPKKDLL--V 236
Query: 216 AEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPS 275
E +SR ++ S+ N ++I G+ L GE E +G I SL+
Sbjct: 237 EEI-------KSRLPHVKSLQQNINPKKTSLIMGDETISLFGEETIEETLGDISFSLSAR 289
Query: 276 SFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
+F Q N + L ++++ V D Y G G IGL LA + R V+ +++ E
Sbjct: 290 AFFQLNPKQTVKLYNEVKRAAALTGKEKVIDAYCGVGTIGLWLAD--QAREVRGMDVIAE 347
Query: 334 SQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHA 390
+ E + N+ + SW+ S DV+VVDPPR G D L+
Sbjct: 348 ---AIEDAKENAKRQGITNVQYEVGKAEKIIPSWVRSSWIPDVIVVDPPRTGCDDQLLKT 404
Query: 391 LQS 393
++
Sbjct: 405 IKQ 407
>gi|424760382|ref|ZP_18188010.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
R508]
gi|402403633|gb|EJV36294.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
R508]
Length = 504
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 145/310 (46%), Gaps = 58/310 (18%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR G +++ +H+++ + H I+AA+ +R +++ +V+PY
Sbjct: 177 YRNKAQIPVRKIDNQLQTGFFRKNSHDLIPMEHFYIQDLEIDAAIVKIRDIMRKYSVKPY 236
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEK-SPNS----DKLES 214
+E D TG+LR++ + Y G++ + L+ +R K P S D LE+
Sbjct: 237 NESDNTGNLRHIVV-----------RRGYHTGEMMVVLI--TRTPKLFPISKIVPDILEA 283
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
+ E + S+ N NVIFGN L G + + + ++
Sbjct: 284 IPEVV--------------SIVQNVNPKRTNVIFGNETILLHGSEKITDTIFDLKFEISA 329
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
SF Q N + +++ +K+++Y + V D Y G G IGL+L A+ + V +E+ +
Sbjct: 330 RSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTL--AQDAKQVYGIEVIE 387
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSI-------EPLSWLVGS----DVLVVDPPRK 381
E+ K + N +N +N+ E L LV + DV+VVDPPRK
Sbjct: 388 EA-----------VKDAENNAKLNNIENATFTAGLAEELLPKLVENGLQPDVVVVDPPRK 436
Query: 382 GLDSSLVHAL 391
GLD LV+ L
Sbjct: 437 GLDGQLVNTL 446
>gi|403237378|ref|ZP_10915964.1| putative RNA methyltransferase [Bacillus sp. 10403023]
Length = 458
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 87/351 (24%), Positives = 154/351 (43%), Gaps = 40/351 (11%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDFTFDSCRL-----YGWRCRAK 105
CP ++ C GC + + +V + + IG L L + +R +A+
Sbjct: 78 CPIYKECGGCQLQHLSYEGQLVAKRKQVQEVLTRIGKLQNIHVHPALGMENPWRYRNKAQ 137
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
+ V + G YQ+ +H ++D+ C + + V+ ++ ++ ++ Y+E
Sbjct: 138 VPVADREGGLVAGFYQQRSHEIIDMEACLIQQEKNDLVVQTVKSICEKYGIQAYNEKSNK 197
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGS 225
G LR++ MA RY ++ +V +R ++ P+ DK+ +++ + + G
Sbjct: 198 GTLRHI-MA------------RYGQVSGEMMIVLITRTKELPHKDKI--ISDIIEKLPG- 241
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
+ S+ N NVIFGN L GE ++N+G I +++ SF Q N
Sbjct: 242 ------VKSIVQNINPKQTNVIFGNETIVLWGEEYIYDNIGDIRFAISARSFYQVNPEQT 295
Query: 286 DILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
+L K +Y +V D Y G G I L L A+K + V VEI E + E
Sbjct: 296 KVLYDKALEYAELTGEETVIDAYCGIGTISLFL--AQKAKKVYGVEIVPE---AIEDAKR 350
Query: 344 RLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ N + + + +W V +DV+VVDPPRKG D +L+ +
Sbjct: 351 NATLNHINNTEFAVGEAEVVIPNWYKDGVKADVIVVDPPRKGCDEALLQTI 401
>gi|374334718|ref|YP_005091405.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Oceanimonas sp. GK1]
gi|372984405|gb|AEY00655.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Oceanimonas sp. GK1]
Length = 446
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 97/365 (26%), Positives = 160/365 (43%), Gaps = 60/365 (16%)
Query: 50 CALQCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFD----SCRL-------- 97
CA CPH +C GC ++D AT GLL + SC +
Sbjct: 68 CADFCPH-TACGGCQLR-------VMDYATQLELKRGLLLTALEERGLSCPVGDILGMSE 119
Query: 98 -YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNV 156
+ +R +A+ AV+ P +G Y + +H +V++ C+ P L+RQ +++ V
Sbjct: 120 PFHYRNKAQFAVQ---PGPTVGFYAKHSHQLVEVEQCRVQAPVTGDITALVRQWMRDWAV 176
Query: 157 EPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLA 216
++E +G +RY L + +G++ + LV E + +E LA
Sbjct: 177 PAFNEAHHSGCVRY-----------LMVRDGVHSGELMVVLVVAEEPEAAALEALVERLA 225
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
R ++ SV + N + G + R L GE+ + +G + ++ S
Sbjct: 226 -----------RVPHMASVQLCLNEAAGNRVLGQQVRTLWGESTITDTLGELQFDISALS 274
Query: 277 FGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLA--AARKCRSVKCVEINK 332
F Q N R ++L R+ + +V DLY+G G I L LA AAR V +E+
Sbjct: 275 FYQINPRQTEVLYREAVRLAALSGTETVFDLYSGIGTISLFLAPHAAR----VHGIELVS 330
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHN-ADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVH 389
E+ E+ +R + N+S+H A + P + G +DV+VVDPPRKG D L+
Sbjct: 331 EAVADAERNAARNGMT---NVSFHQGAAEQLVPALYEQGLSADVVVVDPPRKGCDEQLLG 387
Query: 390 ALQSI 394
L +
Sbjct: 388 TLAQM 392
>gi|89097040|ref|ZP_01169931.1| YefA [Bacillus sp. NRRL B-14911]
gi|89088420|gb|EAR67530.1| YefA [Bacillus sp. NRRL B-14911]
Length = 458
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 99/355 (27%), Positives = 154/355 (43%), Gaps = 42/355 (11%)
Query: 54 CPHFQSCSGCT-HEFNLHRPIIVDE--ATDFFKSIGLLDFTFDSCRLYG----WRCRAKL 106
CP ++ C GC + ++ E D IG L+ + G WR R K
Sbjct: 77 CPIYKECGGCQLQHLSYQGQMLAKEKQVRDVLTRIGKLE-DVKVHPVLGMSEPWRYRNKA 135
Query: 107 AV-RGTSTSPLIG-LYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
V G LIG YQ+ +H ++D+ C + + V+ +++ + V YDE
Sbjct: 136 QVPIGEHEGGLIGGFYQQRSHQIIDMKECLIQQEKNDEVVQTVKEICAKYGVRAYDEGRH 195
Query: 165 TGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRNG 223
G+LR++ A G+V + L+ +R + PN K+ E +A +
Sbjct: 196 KGELRHIM-----------ARHGLVTGEVMVVLI--TRTNELPNRKKITEEIAASI---- 238
Query: 224 GSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTR 283
I S+ N NVIFG+ R + GE ++ +G I +++ SF Q N
Sbjct: 239 ------KGIKSIVHNVNPKKTNVIFGDVTRVIWGEEVIYDYIGDIKFAISARSFYQVNPE 292
Query: 284 AFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y SV D Y G G I L L A+K + V VEI E+ + K
Sbjct: 293 QTKVLYEKALEYADLSGEESVIDAYCGIGTISLFL--AQKAKKVFGVEIVPEA-IEDAKR 349
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHALQSI 394
+ L + + A+ I P + G +DVLVVDPPRKG D +L+ + S+
Sbjct: 350 NAALNGITNAEFAVGEAEKVI-PDWYKEGNQADVLVVDPPRKGCDEALLQTILSM 403
>gi|261405173|ref|YP_003241414.1| TrmA family RNA methyltransferase [Paenibacillus sp. Y412MC10]
gi|261281636|gb|ACX63607.1| RNA methyltransferase, TrmA family [Paenibacillus sp. Y412MC10]
Length = 532
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 90/353 (25%), Positives = 151/353 (42%), Gaps = 44/353 (12%)
Query: 54 CPHFQSCSGC-----THEFNLH-RPIIVDEATDFFKSIGLLDFTFDSC----RLYGWRCR 103
CP F C GC ++E L + IV EA F + +GL D F + +R +
Sbjct: 152 CPVFGICGGCQIQHISYEGQLQAKTDIVREA--FSRYVGLDDVKFKPILGMEHPWDYRNK 209
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A+L ++ + GLY+ +H +VDI C HP++N VE ++ ++EL + Y E+
Sbjct: 210 AQLQLKRKGHEVIAGLYEADSHTIVDISGCPIQHPKVNETVEKVKSVLEELRIPLYKENG 269
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNG 223
+R ++ +++G+VQ+TL+ + K P D L +
Sbjct: 270 AKDGVR-----------TIVVRHGFQSGEVQVTLI--TAGSKLPRQDDLVRMLRLTIPE- 315
Query: 224 GSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTR 283
+ + N ++IFG+R L G E++ + SL+P +F Q N +
Sbjct: 316 --------VSGISLNINPKKTSLIFGDRTVSLWGAESMQESLSDLQFSLSPRAFFQLNPQ 367
Query: 284 AFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
L ++ +V D Y G G IGL LA K V+ +E E + E
Sbjct: 368 QTVKLYESVRAAAGLTGKETVIDAYCGTGTIGLWLAPYAK--EVRGIETIPE---AVEDA 422
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ ++ N S+H W+ + DV++ DPPR GLD + +
Sbjct: 423 KANAQRNGRANASFHVGQAEELLPRWVKEGMKPDVIIADPPRTGLDPRFLETV 475
>gi|227515533|ref|ZP_03945582.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
fermentum ATCC 14931]
gi|227086146|gb|EEI21458.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
fermentum ATCC 14931]
Length = 458
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 152/337 (45%), Gaps = 58/337 (17%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+G+R +A++ VR P G Y+ G+H++V I P I+ V ++R +++ V
Sbjct: 128 FGYRNKAQVPVRMVKGQPTTGFYKRGSHDLVPIEDFYIQDPAIDQTVLVVRDLLRKYQVP 187
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
YDE+ G +R V + Y + +V + LV N E P+ ++ E
Sbjct: 188 AYDEETHRGVIRTVMV-----------RRGYYSHQVMVVLVTNG--EHFPHVAEITR--E 232
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
R G I S+ N NVI G + L GE + + GID +++P SF
Sbjct: 233 ISERVPG-------IKSIVQNVNDKRTNVILGTKNHLLWGEPTIHDTLLGIDFTISPLSF 285
Query: 278 GQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q N + + L + + S V D Y G G I SLA A+ + V VEI
Sbjct: 286 YQVNPQQTERLYQTAIENAGLDGSKTVIDAYCGIGTI--SLAVAKHAKHVYGVEI----- 338
Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPPR 380
+P ++ + + A+N IE +++VG DV++VDPPR
Sbjct: 339 ---------VPAAI-ADAKQNAANNGIENATFVVGKAEEQFAKWQAEGLKPDVVIVDPPR 388
Query: 381 KGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKR 417
KGLD+ L+ A + A +K +S + +++V++ +R
Sbjct: 389 KGLDAQLIEATGKM--APQKVIYVSCNPATLVRDLQR 423
>gi|260662798|ref|ZP_05863692.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
fermentum 28-3-CHN]
gi|260552879|gb|EEX25878.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
fermentum 28-3-CHN]
Length = 458
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 152/337 (45%), Gaps = 58/337 (17%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+G+R +A++ VR P G Y+ G+H++V I P I+ V ++R +++ V
Sbjct: 128 FGYRNKAQVPVRMVKGQPTTGFYKRGSHDLVPIEDFYIQDPAIDQTVLVVRDLLRKYQVP 187
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
YDE+ G +R V + Y + +V + LV N E P+ ++ E
Sbjct: 188 AYDEETHRGVIRTVMV-----------RRGYYSHQVMVVLVTNG--EHFPHVAEITR--E 232
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
R G I S+ N NVI G + L GE + + GID +++P SF
Sbjct: 233 ISERVPG-------IKSIVQNVNDKRTNVILGTKNHLLWGEPTIHDTLLGIDFTISPLSF 285
Query: 278 GQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q N + + L + + S V D Y G G I SLA A+ + V VEI
Sbjct: 286 YQVNPQQTERLYQTAIENAGLDGSQTVIDAYCGIGTI--SLAVAKHAKHVYGVEI----- 338
Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPPR 380
+P ++ + + A+N IE +++VG DV++VDPPR
Sbjct: 339 ---------VPAAI-ADAKQNAANNGIENATFVVGKAEEQFAKWQAEGLKPDVVIVDPPR 388
Query: 381 KGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKR 417
KGLD+ L+ A + A +K +S + +++V++ +R
Sbjct: 389 KGLDAQLIEATGKM--APQKVIYVSCNPATLVRDLQR 423
>gi|386712942|ref|YP_006179264.1| RNA methyltransferase [Halobacillus halophilus DSM 2266]
gi|384072497|emb|CCG43987.1| RNA methyltransferase [Halobacillus halophilus DSM 2266]
Length = 460
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 96/353 (27%), Positives = 152/353 (43%), Gaps = 43/353 (12%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDFT--FDSCRLYG-WRCRAKLA 107
C + C GC + +++ + ++ + K IG L+ ++ + WR R K+
Sbjct: 79 CDVYYQCGGCQLQHMSYSMQLEMKHNQVKNAMKKIGHLEHVPVHETIGMADPWRYRNKIQ 138
Query: 108 V---RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+ + G YQ+ +HN++D+ C + VE +R+ EL + YDED
Sbjct: 139 IPVGQKEDGKLKTGFYQKRSHNIIDMDTCIIQDELNDRMVETVRRIATELGISAYDEDTH 198
Query: 165 TGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGG 224
G LR++ M T T + I LV ++N P DKL + E
Sbjct: 199 RGTLRHI-MVRTGQTTK----------DIMIVLVMKTKN--LPEKDKL--IDEI------ 237
Query: 225 SRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRA 284
R + S+ N NVI G + + G+ ++ +G I ++P SF Q N
Sbjct: 238 -RDAFPSVKSIVHNVNNQKTNVILGKETKVIWGDEYIYDMIGDIKFMISPKSFYQVNPTQ 296
Query: 285 FDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTV 342
L K +Y G +V D Y G G I L L A+K + V VE+ E+ +K
Sbjct: 297 TKNLYDKALEYADLRGGETVIDAYCGIGTISLFL--AQKAKKVYGVEVVPEAVTDAKKN- 353
Query: 343 SRLPKSVDGNISWHNADNSIEPLSWL----VGSDVLVVDPPRKGLDSSLVHAL 391
+RL K + A+ E + W + DV+VVDPPRKG D L+ A+
Sbjct: 354 ARLNKMDNAEFYVGQAE---ELMPWWRNQGLRPDVIVVDPPRKGCDEELLKAM 403
>gi|422883897|ref|ZP_16930346.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK49]
gi|332361995|gb|EGJ39797.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK49]
Length = 466
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/327 (26%), Positives = 153/327 (46%), Gaps = 42/327 (12%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + G +++ +H+++ I P I+ + R ++ +++P
Sbjct: 138 GYRNKAQVPVRRVNGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKP 197
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R +L + +G++ + LV P ++E L E
Sbjct: 198 YDEQEKTGLIR-----------NLVVRRGHYSGEIMVILVTTR-----PKIFRVEQLME- 240
Query: 219 LWRNGGSRSREHY--IHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
R E + I S+ N N IFG WR L G+ + + G D +A +
Sbjct: 241 -------RLTEAFPAIKSIMQNINDQPGNAIFGKDWRTLYGQNYITDQMLGNDFQIAAPA 293
Query: 277 FGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q NT + L + + A V D Y+G G IGLS+ A++ + V VE+ E+
Sbjct: 294 FYQVNTEMAEKLYQTAIDFSELTADDVVLDAYSGIGTIGLSV--AKQVKQVYGVEVIPEA 351
Query: 335 QLSFEKTVSRLPKSVDG--NISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVH 389
+ +K +++G N S+ A +WL + +DV++VDPPRKGL S +
Sbjct: 352 VENSQKNA-----AINGITNASYVCAPAEEAIQNWLKEGIQADVILVDPPRKGLTESFIK 406
Query: 390 ALQSIGSAERKAKSLSESSSSMVKEEK 416
A S+ +K +S + ++M ++ K
Sbjct: 407 A--SVSMEPKKITYISCNVATMARDIK 431
>gi|384178443|ref|YP_005564205.1| RNA methyltransferase [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|324324527|gb|ADY19787.1| RNA methyltransferase [Bacillus thuringiensis serovar finitimus
YBT-020]
Length = 459
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 154/357 (43%), Gaps = 45/357 (12%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF--TFDSCRLYGWRCRA 104
CP ++ C GC + N R I+V + K+ T + +R ++
Sbjct: 80 CPVYEECGGCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKS 139
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E +
Sbjct: 140 QLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQ 199
Query: 165 TGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 200 KGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--IAEV---- 238
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ---QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLNP 295
Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+L + +K + + D Y G G IGL L A V+ +++ E+ K
Sbjct: 296 EQTVVLYNEAKKAAALTGNEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIADARK 353
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 354 NAKRHGFT---NTKYEAGKAEQWLPKWVKDGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|307688528|ref|ZP_07630974.1| RNA methyltransferase, TrmA family protein [Clostridium
cellulovorans 743B]
Length = 462
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 94/381 (24%), Positives = 160/381 (41%), Gaps = 81/381 (21%)
Query: 54 CPHFQSCSGCTH---------EFNLHRPIIVDEATDFFKSIGLLDFTFDSCRL------- 97
C ++ C GC EF R D + IG D + D+ +L
Sbjct: 77 CEIYEKCGGCQLQHLSYKGQLEFKKSR------VQDCIERIGGFDLSEDNIQLHETLGME 130
Query: 98 --YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELN 155
Y +R + +L V GT IG Y + +HN++D+ C + V++++Q ++E
Sbjct: 131 NPYRYRNKVQLPVGGTVEDVKIGFYSQRSHNIIDMESCNIQFEEADTVVDIVKQWMQENK 190
Query: 156 VEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESL 215
++PY+E+ TG ++++ + + + N ++ + +V N ++ P + L
Sbjct: 191 IQPYNEETHTGIVKHIMV-----------RKAFNNDELMVVVVTNGKS--LPKKEILIKE 237
Query: 216 AEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPS 275
+ + N + SV N NV+ G L G+ + +G +++P
Sbjct: 238 LQDSFNN---------LVSVVQNVNDKKTNVVLGLDNVTLFGKDTISDYIGEFKFNISPL 288
Query: 276 SFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
SF Q N ++L K +Y + V D Y G G I L L ++K V VEI
Sbjct: 289 SFFQVNPVQTEVLYNKALEYAGLTGNEVVFDAYCGTGTISLFL--SKKASKVYGVEI--- 343
Query: 334 SQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVG---------------SDVLVVDP 378
E + N + + +N I+ + VG +DV+VVDP
Sbjct: 344 ----IEAAIE--------NANINAKENKIDNAEFFVGKCEDVIPKLIADGVKADVVVVDP 391
Query: 379 PRKGLDSSLVHALQSIGSAER 399
PRKG + SL+ AL S+ S ER
Sbjct: 392 PRKGCEKSLLDALVSM-SPER 411
>gi|229148824|ref|ZP_04277072.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1550]
gi|228634618|gb|EEK91199.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1550]
Length = 459
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 89/361 (24%), Positives = 154/361 (42%), Gaps = 53/361 (14%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYG------W 100
CP ++ C GC + N R I+V + K+ C G +
Sbjct: 80 CPVYEECGGCQLQHLDYKEQLNQKRDIVVQAFEKYMKN----SMEEKICPTLGMENPWHY 135
Query: 101 RCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYD 160
R +++L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+
Sbjct: 136 RNKSQLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYN 195
Query: 161 EDDRTGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
E + G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 196 EKKQKGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--IAEV 238
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ + + S+ N +VIFG++ L G+ E +G + L+ +F
Sbjct: 239 -------QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFF 291
Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q N +L + +K + + D Y G G IGL L A V+ +++ E+
Sbjct: 292 QLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIA 349
Query: 337 SFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQS 393
K R + N + W+ DV+VVDPPR G D L+ +
Sbjct: 350 DARKNAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILK 406
Query: 394 I 394
+
Sbjct: 407 V 407
>gi|42779622|ref|NP_976869.1| RNA methyltransferase [Bacillus cereus ATCC 10987]
gi|118476178|ref|YP_893329.1| tRNA (uracil-5-)-methyltransferase [Bacillus thuringiensis str. Al
Hakam]
gi|196045225|ref|ZP_03112457.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
03BB108]
gi|225862467|ref|YP_002747845.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
03BB102]
gi|229182811|ref|ZP_04310050.1| Uncharacterized RNA methyltransferase [Bacillus cereus BGSC 6E1]
gi|229194804|ref|ZP_04321591.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1293]
gi|376264443|ref|YP_005117155.1| TrmA family RNA methyltransferase [Bacillus cereus F837/76]
gi|423577719|ref|ZP_17553838.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
MSX-D12]
gi|423607752|ref|ZP_17583645.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD102]
gi|51316697|sp|Q73E18.1|Y542_BACC1 RecName: Full=Uncharacterized RNA methyltransferase BCE_0542
gi|42735538|gb|AAS39477.1| RNA methyltransferase, TrmA family [Bacillus cereus ATCC 10987]
gi|118415403|gb|ABK83822.1| 23S rRNA m(5)U-1939 methyltransferase [Bacillus thuringiensis str.
Al Hakam]
gi|196023809|gb|EDX62484.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
03BB108]
gi|225790988|gb|ACO31205.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
03BB102]
gi|228588652|gb|EEK46683.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1293]
gi|228600691|gb|EEK58272.1| Uncharacterized RNA methyltransferase [Bacillus cereus BGSC 6E1]
gi|364510243|gb|AEW53642.1| RNA methyltransferase, TrmA family [Bacillus cereus F837/76]
gi|401204423|gb|EJR11240.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
MSX-D12]
gi|401239949|gb|EJR46357.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD102]
Length = 459
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 89/358 (24%), Positives = 159/358 (44%), Gaps = 47/358 (13%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRL---YGWRCR 103
CP ++ C GC + N R I+V +A + + GL + + + + +R +
Sbjct: 80 CPVYEECGGCQLQHLDYKEQLNQKRDIVV-QAFQKYMNNGLEEKIRPTLGMENPWHYRNK 138
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
++L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E
Sbjct: 139 SQLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKK 198
Query: 164 RTGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
+ G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 199 QKGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--IAEV--- 238
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ----QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLN 294
Query: 282 TRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L + +K + + D Y G G IGL L A V+ +++ E+
Sbjct: 295 PEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIADAR 352
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
K R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 353 KNAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|421507828|ref|ZP_15954746.1| RNA methyltransferase [Bacillus anthracis str. UR-1]
gi|401822263|gb|EJT21415.1| RNA methyltransferase [Bacillus anthracis str. UR-1]
Length = 459
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 154/357 (43%), Gaps = 45/357 (12%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF--TFDSCRLYGWRCRA 104
CP ++ C GC + N R I+V + K+ T + +R ++
Sbjct: 80 CPVYEECGGCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKS 139
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E +
Sbjct: 140 QLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQ 199
Query: 165 TGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 200 KGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--IAEV---- 238
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ---QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLNP 295
Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+L + +K + + D Y G G IGL L A V+ +++ E+ K
Sbjct: 296 EQTVVLYNEAKKAAALTGNEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIADARK 353
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 354 NAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|228931916|ref|ZP_04094810.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228827701|gb|EEM73441.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
Length = 459
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 154/357 (43%), Gaps = 45/357 (12%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF--TFDSCRLYGWRCRA 104
CP ++ C GC + N R I+V + K+ T + +R ++
Sbjct: 80 CPVYEECGGCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKS 139
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E +
Sbjct: 140 QLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQ 199
Query: 165 TGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 200 KGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--IAEV---- 238
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ---QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLNP 295
Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+L + +K + + D Y G G IGL L A V+ +++ E+ K
Sbjct: 296 EQTVVLYNEAKKAAALTGNEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIADARK 353
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 354 NAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|125718271|ref|YP_001035404.1| RNA methyltransferase [Streptococcus sanguinis SK36]
gi|125498188|gb|ABN44854.1| RNA methyltransferase, putative [Streptococcus sanguinis SK36]
Length = 456
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/325 (26%), Positives = 152/325 (46%), Gaps = 38/325 (11%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + G +++ +H+++ I P I+ + R ++ +++P
Sbjct: 125 GYRNKAQVPVRRVNGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRNLLRRFDLKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R +L + +G++ + LV P ++E L E
Sbjct: 185 YDEQEKTGLIR-----------NLVVRRGHYSGEIMVILVTTR-----PKIFRVEQLMEC 228
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
L + I S+ N N IFG WR L G+ + + G D +A +F
Sbjct: 229 LTEAFPA------IKSIMQNINDQPGNAIFGKDWRTLYGQNYITDQMLGNDFQIAAPAFY 282
Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q NT + L + + A V D Y+G G IGLS+ A++ + V VE+ E+
Sbjct: 283 QINTEMAEKLYQTAIDFSELTADDVVLDAYSGIGTIGLSV--AKQVKQVYGVEVIPEAVE 340
Query: 337 SFEKTVSRLPKSVDG--NISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ SR +++G N S+ A +WL + +DV++VDPPRKGL S + A
Sbjct: 341 N-----SRKNAAINGITNASYVCAPAEEAIQNWLKEGIQADVILVDPPRKGLTESFIKA- 394
Query: 392 QSIGSAERKAKSLSESSSSMVKEEK 416
S+ +K +S + ++M ++ K
Sbjct: 395 -SVSMEPKKITYISCNVATMARDIK 418
>gi|89097300|ref|ZP_01170190.1| hypothetical protein B14911_17015 [Bacillus sp. NRRL B-14911]
gi|89088123|gb|EAR67234.1| hypothetical protein B14911_17015 [Bacillus sp. NRRL B-14911]
Length = 460
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/363 (23%), Positives = 153/363 (42%), Gaps = 62/363 (17%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVDE----------ATDFFKSIGLLDFTFDSCR 96
CP ++ C GC + R I++ D +IG+ D
Sbjct: 79 CPVYELCGGCQLQHLRYDRQLQEKRDIVIQALERHTKLPVAGLDIRDTIGMED------- 131
Query: 97 LYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNV 156
+ +R +A V + GLY +HN+++IP C HP N A+ ++++ + ++ +
Sbjct: 132 PWNYRNKASFQVGQEDGKIIAGLYGLNSHNLINIPQCVVQHPHTNKAIGVVKKVMNKIGI 191
Query: 157 EPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLA 216
Y+E + G +R ++ A ++G++QI ++ ++++ P ++L +
Sbjct: 192 SVYNEKTKKGTVR-----------TIMARTGIQSGELQIVIITSTKD--LPKKEQL--IT 236
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
E R + S+ N ++IFG RH+ GE E +G + L+ +
Sbjct: 237 EIT-------KRLPQVKSIMQNINGEKTSLIFGKETRHMHGEEYIQETLGDLSFELSART 289
Query: 277 FGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q N L +++K V D Y G G IGL LA + V+ ++I ES
Sbjct: 290 FFQLNPEQTVKLYNEVKKAASLTGKEKVADAYCGVGTIGLWLAD--QAGEVRGMDIIPES 347
Query: 335 QLSFEKTVSRLPKSVDGNI---SWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLV 388
+K +R NI + + W+ DV+VVDPPR GLD +L+
Sbjct: 348 IQDAKKNAAR------NNIKHAKYETGKAEVLLPKWMKEGWRPDVIVVDPPRTGLDQALL 401
Query: 389 HAL 391
+
Sbjct: 402 KTI 404
>gi|49476818|ref|YP_034754.1| tRNA (uracil-5-)-methyltransferase [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|52144821|ref|YP_082009.1| RNA methyltransferase [Bacillus cereus E33L]
gi|196034722|ref|ZP_03102130.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus W]
gi|196040108|ref|ZP_03107410.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
NVH0597-99]
gi|218231359|ref|YP_002365269.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus B4264]
gi|218901630|ref|YP_002449464.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus AH820]
gi|228925680|ref|ZP_04088767.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228944240|ref|ZP_04106616.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228956903|ref|ZP_04118684.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|229120088|ref|ZP_04249340.1| Uncharacterized RNA methyltransferase [Bacillus cereus 95/8201]
gi|229143212|ref|ZP_04271644.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST24]
gi|296501251|ref|YP_003662951.1| tRNA(Uracil-5-)-methyltransferase [Bacillus thuringiensis BMB171]
gi|300119050|ref|ZP_07056761.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus SJ1]
gi|423553656|ref|ZP_17529983.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
ISP3191]
gi|423590245|ref|ZP_17566309.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD045]
gi|423632397|ref|ZP_17608143.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD154]
gi|423653367|ref|ZP_17628666.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD200]
gi|49328374|gb|AAT59020.1| tRNA (uracil-5-)-methyltransferase (RNA methyltransferase, TrmA
family) [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|51978290|gb|AAU19840.1| RNA methyltransferase, TrmA family [Bacillus cereus E33L]
gi|195992765|gb|EDX56725.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus W]
gi|196028963|gb|EDX67568.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
NVH0597-99]
gi|218159316|gb|ACK59308.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus B4264]
gi|218538073|gb|ACK90471.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus AH820]
gi|228640293|gb|EEK96691.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST24]
gi|228663326|gb|EEL18914.1| Uncharacterized RNA methyltransferase [Bacillus cereus 95/8201]
gi|228802746|gb|EEM49582.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228815391|gb|EEM61636.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228833955|gb|EEM79505.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|296322303|gb|ADH05231.1| tRNA(Uracil-5-)-methyltransferase [Bacillus thuringiensis BMB171]
gi|298723666|gb|EFI64397.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus SJ1]
gi|401183429|gb|EJQ90545.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
ISP3191]
gi|401221067|gb|EJR27693.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD045]
gi|401261275|gb|EJR67437.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD154]
gi|401301531|gb|EJS07119.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD200]
Length = 459
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 154/357 (43%), Gaps = 45/357 (12%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF--TFDSCRLYGWRCRA 104
CP ++ C GC + N R I+V + K+ T + +R ++
Sbjct: 80 CPVYEECGGCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKS 139
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E +
Sbjct: 140 QLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQ 199
Query: 165 TGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 200 KGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--IAEV---- 238
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ---QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLNP 295
Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+L + +K + + D Y G G IGL L A V+ +++ E+ K
Sbjct: 296 EQTVVLYNEAKKAAALTGNEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIADARK 353
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 354 NAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|299820563|ref|ZP_07052453.1| 23S rRNA (uracil-5-)-methyltransferase [Listeria grayi DSM 20601]
gi|299818058|gb|EFI85292.1| 23S rRNA (uracil-5-)-methyltransferase [Listeria grayi DSM 20601]
Length = 457
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 90/354 (25%), Positives = 162/354 (45%), Gaps = 43/354 (12%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVDEATDFFK-SIGLLDF--TFDSCRLYGWRCR 103
CP +++C GC + L R I++ K +IG L + +R +
Sbjct: 76 CPVYEACGGCQLQHISYQAQLELKRDILIQALEKHTKFNIGKLPIKDVIGMDEPFRYRNK 135
Query: 104 AKLAVRGTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
++ R + ++ GLY +H++V I C P A +++ ++ELN+ Y+E
Sbjct: 136 SQFQTRYSEDGNVVAGLYSANSHDLVPIDDCLVQDPATVAITNTVKEALQELNIPIYNEK 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
+G +R ++ ++ G+ Q+ L+ NS+ K P K +L E +
Sbjct: 196 QNSGIVR-----------TIVVRTGFKTGQSQLVLITNSK--KLP---KKRALLEII--- 236
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ + I S+ N T +++IFG HL GE E +G + L+ +F Q N
Sbjct: 237 ---KQKHPEIISIMQNVNTQKSSLIFGEETMHLDGEETMQEALGEMKYDLSARAFFQLNP 293
Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+ L ++++ + + + D Y GAG IGLSLA + R V+ +++ E+ + K
Sbjct: 294 VQTEKLYNEVRRALNLSGTERIIDAYCGAGTIGLSLAG--QVREVRGMDVIPEA-IEDAK 350
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + + A+ +I P WL +D +++DPPR G D SL+ AL
Sbjct: 351 HNAALNQVTNSYYEVGKAE-TILP-KWLEEGFQADAVILDPPRVGCDQSLIRAL 402
>gi|30260591|ref|NP_842968.1| RNA methyltransferase [Bacillus anthracis str. Ames]
gi|47525703|ref|YP_017052.1| RNA methyltransferase [Bacillus anthracis str. 'Ames Ancestor']
gi|49183442|ref|YP_026694.1| RNA methyltransferase [Bacillus anthracis str. Sterne]
gi|65317856|ref|ZP_00390815.1| COG2265: SAM-dependent methyltransferases related to tRNA
(uracil-5-)-methyltransferase [Bacillus anthracis str.
A2012]
gi|165870726|ref|ZP_02215379.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0488]
gi|167634708|ref|ZP_02393027.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0442]
gi|167641292|ref|ZP_02399545.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0193]
gi|170688986|ref|ZP_02880187.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0465]
gi|170707136|ref|ZP_02897592.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0389]
gi|177654527|ref|ZP_02936383.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0174]
gi|190567598|ref|ZP_03020511.1| RNA methyltransferase, TrmA family [Bacillus anthracis str.
Tsiankovskii-I]
gi|227813100|ref|YP_002813109.1| TrmA family RNA methyltransferase [Bacillus anthracis str. CDC 684]
gi|229603797|ref|YP_002865038.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0248]
gi|254686816|ref|ZP_05150674.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
CNEVA-9066]
gi|254724890|ref|ZP_05186673.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
A1055]
gi|254738958|ref|ZP_05196660.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
Western North America USA6153]
gi|254744546|ref|ZP_05202225.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
Kruger B]
gi|254756196|ref|ZP_05208225.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
Vollum]
gi|254762015|ref|ZP_05213864.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
Australia 94]
gi|386734280|ref|YP_006207461.1| RNA methyltransferase [Bacillus anthracis str. H9401]
gi|421639000|ref|ZP_16079594.1| RNA methyltransferase [Bacillus anthracis str. BF1]
gi|50401539|sp|Q81Z48.1|Y426_BACAN RecName: Full=Uncharacterized RNA methyltransferase
BA_0426/GBAA_0426/BAS0414
gi|30253959|gb|AAP24454.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. Ames]
gi|47500851|gb|AAT29527.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. 'Ames
Ancestor']
gi|49177369|gb|AAT52745.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. Sterne]
gi|164713560|gb|EDR19084.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0488]
gi|167510800|gb|EDR86193.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0193]
gi|167529782|gb|EDR92530.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0442]
gi|170127914|gb|EDS96785.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0389]
gi|170667087|gb|EDT17849.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0465]
gi|172080639|gb|EDT65722.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0174]
gi|190561385|gb|EDV15357.1| RNA methyltransferase, TrmA family [Bacillus anthracis str.
Tsiankovskii-I]
gi|227004638|gb|ACP14381.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. CDC
684]
gi|229268205|gb|ACQ49842.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0248]
gi|384384132|gb|AFH81793.1| RNA methyltransferase [Bacillus anthracis str. H9401]
gi|403393915|gb|EJY91157.1| RNA methyltransferase [Bacillus anthracis str. BF1]
Length = 459
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 154/357 (43%), Gaps = 45/357 (12%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF--TFDSCRLYGWRCRA 104
CP ++ C GC + N R I+V + K+ T + +R ++
Sbjct: 80 CPVYEECGGCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKS 139
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E +
Sbjct: 140 QLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQ 199
Query: 165 TGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 200 KGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--IAEV---- 238
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ---QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLNP 295
Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+L + +K + + D Y G G IGL L A V+ +++ E+ K
Sbjct: 296 EQTVVLYNEAKKAAALTGNEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIADARK 353
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 354 NAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|229108092|ref|ZP_04237717.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-15]
gi|423644768|ref|ZP_17620384.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD166]
gi|228675367|gb|EEL30586.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-15]
gi|401269384|gb|EJR75417.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD166]
Length = 459
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 154/357 (43%), Gaps = 45/357 (12%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF--TFDSCRLYGWRCRA 104
CP ++ C GC + N R I+V + K+ T + +R ++
Sbjct: 80 CPVYEECGGCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKS 139
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E +
Sbjct: 140 QLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQ 199
Query: 165 TGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 200 KGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--IAEV---- 238
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ---QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLNP 295
Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+L + +K + + D Y G G IGL L A V+ +++ E+ K
Sbjct: 296 EQTVVLYNEAKKAAALTGNEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIADARK 353
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 354 NAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|302873306|ref|YP_003841939.1| RNA methyltransferase, TrmA family [Clostridium cellulovorans 743B]
gi|302576163|gb|ADL50175.1| RNA methyltransferase, TrmA family [Clostridium cellulovorans 743B]
Length = 472
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 94/381 (24%), Positives = 160/381 (41%), Gaps = 81/381 (21%)
Query: 54 CPHFQSCSGCTH---------EFNLHRPIIVDEATDFFKSIGLLDFTFDSCRL------- 97
C ++ C GC EF R D + IG D + D+ +L
Sbjct: 87 CEIYEKCGGCQLQHLSYKGQLEFKKSR------VQDCIERIGGFDLSEDNIQLHETLGME 140
Query: 98 --YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELN 155
Y +R + +L V GT IG Y + +HN++D+ C + V++++Q ++E
Sbjct: 141 NPYRYRNKVQLPVGGTVEDVKIGFYSQRSHNIIDMESCNIQFEEADTVVDIVKQWMQENK 200
Query: 156 VEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESL 215
++PY+E+ TG ++++ + + + N ++ + +V N ++ P + L
Sbjct: 201 IQPYNEETHTGIVKHIMV-----------RKAFNNDELMVVVVTNGKS--LPKKEILIKE 247
Query: 216 AEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPS 275
+ + N + SV N NV+ G L G+ + +G +++P
Sbjct: 248 LQDSFNN---------LVSVVQNVNDKKTNVVLGLDNVTLFGKDTISDYIGEFKFNISPL 298
Query: 276 SFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
SF Q N ++L K +Y + V D Y G G I L L ++K V VEI
Sbjct: 299 SFFQVNPVQTEVLYNKALEYAGLTGNEVVFDAYCGTGTISLFL--SKKASKVYGVEI--- 353
Query: 334 SQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVG---------------SDVLVVDP 378
E + N + + +N I+ + VG +DV+VVDP
Sbjct: 354 ----IEAAIE--------NANINAKENKIDNAEFFVGKCEDVIPKLIADGVKADVVVVDP 401
Query: 379 PRKGLDSSLVHALQSIGSAER 399
PRKG + SL+ AL S+ S ER
Sbjct: 402 PRKGCEKSLLDALVSM-SPER 421
>gi|228995800|ref|ZP_04155460.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock3-17]
gi|229003420|ref|ZP_04161240.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock1-4]
gi|228757798|gb|EEM07023.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock1-4]
gi|228763961|gb|EEM12848.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock3-17]
Length = 461
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/357 (24%), Positives = 153/357 (42%), Gaps = 45/357 (12%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF--TFDSCRLYGWRCRA 104
CP + C GC + N R I+V + D T + +R ++
Sbjct: 80 CPVYDECGGCQLQHLDYKEQLNQKRDIVVQAFEKYMNGSMEADIRPTLGMGNPWHYRNKS 139
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+L V + GLY++ +H ++DI HC H N A +++R+ +++LN+ Y+E +
Sbjct: 140 QLQVGRKDEKVITGLYKQNSHQLIDISHCMIQHKATNEATKVVRRILEKLNISIYNEKKQ 199
Query: 165 TGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 200 KGLVRTIVTRAAVQT-------------GEVQVTLI--TTKEELPNKEQF--IAEV---- 238
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ + + S+ N +VIFG++ +L G+ E +G + L+ +F Q N
Sbjct: 239 ---QKQMPTVKSIMQNVNWRKTSVIFGDKTFNLAGKEVIQETLGDLSFELSARAFFQLNP 295
Query: 283 RAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+L + +K + D Y G G IGL L A V+ +++ E+ +K
Sbjct: 296 EQTVVLYNEAKKAAALTGKEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIEDAKK 353
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 354 NAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|225019491|ref|ZP_03708683.1| hypothetical protein CLOSTMETH_03444 [Clostridium methylpentosum
DSM 5476]
gi|224947712|gb|EEG28921.1| hypothetical protein CLOSTMETH_03444 [Clostridium methylpentosum
DSM 5476]
Length = 467
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 97/359 (27%), Positives = 162/359 (45%), Gaps = 54/359 (15%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVDEATDFFKSIGLLDFTFDSC----RLYGWRC 102
CP ++ C GC+ E ++ R + F+ IG +D T + G+R
Sbjct: 84 CPVYRQCGGCSLRHIRYEAELDIKR----RQVEACFRRIGGIDLTVERILSNPHTEGYRN 139
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A+ V + G Y + +H VV C+ P V ++ I E ++ PYDE
Sbjct: 140 KAQFPVALRDGKAVAGFYAKRSHRVVPCGDCRLQSPAFAPLVRVILDFIDEYHLPPYDET 199
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
+ TG +R Y PA+ G++ + LV ++ P++D+L + N
Sbjct: 200 NHTGLIR------NLYLREAPAT-----GEIMVCLVATKKH--IPSADELAR--RLVACN 244
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ SV N + NVI G+R + G+ + + G+D+ L+P SF Q N+
Sbjct: 245 PK-------VKSVLVNRNSQKTNVILGDRCSVVWGKPVIHDVLRGVDVELSPLSFYQVNS 297
Query: 283 RAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEI----NKESQL 336
+ L ++Y ++ DLY GAG IGLS+A K + V VEI ++++
Sbjct: 298 LQAERLYDLAEEYAHLTGEETLVDLYCGAGTIGLSMAG--KAKRVIGVEIIPVAVEDARR 355
Query: 337 SFEKTVSRLPKSVDGNISWHNADNSIEPLSWL-VGSDVLVVDPPRKGLDSSLVHALQSI 394
S ++ R + +A + L+ + DV++VDPPRKG D+S+ LQSI
Sbjct: 356 SAQRNGVR-----NAEFLCADAKEAARSLAQQGLRPDVVIVDPPRKGCDASV---LQSI 406
>gi|229125919|ref|ZP_04254944.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-Cer4]
gi|228657577|gb|EEL13390.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-Cer4]
Length = 459
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 154/357 (43%), Gaps = 45/357 (12%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVDEATDFFKSIGLLDF--TFDSCRLYGWRCRA 104
CP ++ C GC + N R I+V + K+ T + +R ++
Sbjct: 80 CPVYEECGGCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKS 139
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E +
Sbjct: 140 QLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQ 199
Query: 165 TGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 200 KGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--IAEV---- 238
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ---QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLNP 295
Query: 283 RAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+L + +K ++ D Y G G IGL L A V+ +++ E+ K
Sbjct: 296 EQTVVLYNEAKKAAALTGNENIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIADARK 353
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 354 NAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|228950978|ref|ZP_04113099.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|229068174|ref|ZP_04201481.1| Uncharacterized RNA methyltransferase [Bacillus cereus F65185]
gi|229077781|ref|ZP_04210408.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock4-2]
gi|229177011|ref|ZP_04304406.1| Uncharacterized RNA methyltransferase [Bacillus cereus 172560W]
gi|229188691|ref|ZP_04315730.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 10876]
gi|365163524|ref|ZP_09359632.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus sp.
7_6_55CFAA_CT2]
gi|423422656|ref|ZP_17399687.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG3X2-2]
gi|423434090|ref|ZP_17411071.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG4X12-1]
gi|423507194|ref|ZP_17483777.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus HD73]
gi|449087216|ref|YP_007419657.1| putative RNA methyltransferase [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|228594880|gb|EEK52660.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 10876]
gi|228606486|gb|EEK63912.1| Uncharacterized RNA methyltransferase [Bacillus cereus 172560W]
gi|228705509|gb|EEL57868.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock4-2]
gi|228714988|gb|EEL66856.1| Uncharacterized RNA methyltransferase [Bacillus cereus F65185]
gi|228808705|gb|EEM55203.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|363615390|gb|EHL66854.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus sp.
7_6_55CFAA_CT2]
gi|401119160|gb|EJQ26986.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG3X2-2]
gi|401127359|gb|EJQ35085.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG4X12-1]
gi|402444712|gb|EJV76591.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus HD73]
gi|449020973|gb|AGE76136.1| putative RNA methyltransferase [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 459
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 153/357 (42%), Gaps = 45/357 (12%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF--TFDSCRLYGWRCRA 104
CP ++ C GC + N R I+V + K+ T + +R ++
Sbjct: 80 CPVYEECGGCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKS 139
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E +
Sbjct: 140 QLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQ 199
Query: 165 TGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 200 KGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--IAEV---- 238
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ---QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLNP 295
Query: 283 RAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+L + +K + D Y G G IGL L A V+ +++ E+ K
Sbjct: 296 EQTVVLYNEAKKAAALTGDEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIADARK 353
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 354 NAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|423415691|ref|ZP_17392811.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG3O-2]
gi|423428517|ref|ZP_17405521.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG4O-1]
gi|401095426|gb|EJQ03484.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG3O-2]
gi|401124737|gb|EJQ32499.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG4O-1]
Length = 459
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 153/357 (42%), Gaps = 45/357 (12%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF--TFDSCRLYGWRCRA 104
CP ++ C GC + N R I+V + K+ T + +R ++
Sbjct: 80 CPVYEECGGCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKS 139
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E +
Sbjct: 140 QLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQ 199
Query: 165 TGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 200 KGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--IAEV---- 238
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ---QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLNP 295
Query: 283 RAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+L + +K + D Y G G IGL L A V+ +++ E+ K
Sbjct: 296 EQTVVLYNEAKKAAALTGDEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIADARK 353
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 354 NAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|422826606|ref|ZP_16874785.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK678]
gi|324994724|gb|EGC26637.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK678]
Length = 464
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 156/327 (47%), Gaps = 42/327 (12%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + G +++ +H+++ I P I+ + R ++ +++P
Sbjct: 138 GYRNKAQVPVRRVNGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKP 197
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R +L + +G++ + LV P ++E L E
Sbjct: 198 YDEQEKTGLIR-----------NLVVRRGHYSGEIMVILVTTR-----PKIFRVEQLMEC 241
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
L + I S+ N N IFG WR L G+ + + G D +A +F
Sbjct: 242 LTEAFPA------IKSIMQNINDQPGNAIFGKDWRTLYGQNYITDQMLGNDFQIAAPAFY 295
Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q NT + L + + A V D Y+G G IGLS+ A+ + V VE+ E+
Sbjct: 296 QVNTEMAEKLYQTAIDFSELTADDVVLDAYSGIGTIGLSV--AKHVKQVYGVEVIPEAVE 353
Query: 337 SFEKTVSRLPKSVDG--NISW--HNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVH 389
+ SR +++G N S+ +A+ +I+ +WL + +DV++VDPPRKGL S +
Sbjct: 354 N-----SRKNAAINGITNASYVCASAEEAIQ--NWLKEGIQADVILVDPPRKGLTESFIK 406
Query: 390 ALQSIGSAERKAKSLSESSSSMVKEEK 416
A S+ +K +S + ++M ++ K
Sbjct: 407 A--SVSMEPKKITYISCNVATMARDIK 431
>gi|47567252|ref|ZP_00237966.1| RNA methyltransferase, TrmA family [Bacillus cereus G9241]
gi|228913174|ref|ZP_04076813.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|229042327|ref|ZP_04190077.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH676]
gi|423646552|ref|ZP_17622122.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD169]
gi|47556095|gb|EAL14432.1| RNA methyltransferase, TrmA family [Bacillus cereus G9241]
gi|228726986|gb|EEL78193.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH676]
gi|228846579|gb|EEM91592.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|401287244|gb|EJR93045.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD169]
Length = 459
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 155/357 (43%), Gaps = 45/357 (12%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSI--GLLDFTFDSCRLYGWRCRA 104
CP ++ C GC + N R I+V + K+ + T + +R ++
Sbjct: 80 CPVYEECGGCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSLEEKIRPTLGMENPWHYRNKS 139
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E +
Sbjct: 140 QLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQ 199
Query: 165 TGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 200 KGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--IAEV---- 238
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ---QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLNP 295
Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+L + +K + + D Y G G IGL L A V+ +++ E+ K
Sbjct: 296 EQTVVLYNEAKKAAALTGNEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIADARK 353
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 354 NAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|422823303|ref|ZP_16871491.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK405]
gi|422855238|ref|ZP_16901896.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK1]
gi|422865215|ref|ZP_16911840.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK1058]
gi|324993953|gb|EGC25872.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK405]
gi|327463215|gb|EGF09536.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK1]
gi|327489947|gb|EGF21736.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK1058]
Length = 465
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 156/327 (47%), Gaps = 42/327 (12%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + G +++ +H+++ I P I+ + R ++ +++P
Sbjct: 138 GYRNKAQVPVRRVNGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKP 197
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R +L + +G++ + LV P ++E L E
Sbjct: 198 YDEQEKTGLIR-----------NLVVRRGHYSGEIMVILVTTR-----PKIFRVEQLMEC 241
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
L + I S+ N N IFG WR L G+ + + G D +A +F
Sbjct: 242 LTEAFPA------IKSIMQNINDQPGNAIFGKDWRTLYGQNYITDQMLGNDFQIAAPAFY 295
Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q NT + L + + A V D Y+G G IGLS+ A+ + V VE+ E+
Sbjct: 296 QVNTEMAEKLYQTAIDFSELTADDVVLDAYSGIGTIGLSV--AKHVKQVYGVEVIPEAVE 353
Query: 337 SFEKTVSRLPKSVDG--NISW--HNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVH 389
+ SR +++G N S+ +A+ +I+ +WL + +DV++VDPPRKGL S +
Sbjct: 354 N-----SRKNAAINGITNASYVCASAEEAIQ--NWLKEGIQADVILVDPPRKGLTESFIK 406
Query: 390 ALQSIGSAERKAKSLSESSSSMVKEEK 416
A S+ +K +S + ++M ++ K
Sbjct: 407 A--SVSMEPKKITYISCNVATMARDIK 431
>gi|422820971|ref|ZP_16869164.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK353]
gi|324991589|gb|EGC23522.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK353]
Length = 469
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/325 (26%), Positives = 149/325 (45%), Gaps = 38/325 (11%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + G +++ +H+++ I P I+ + R ++ +++P
Sbjct: 138 GYRNKAQVPVRRVNGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKP 197
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R +L + +G++ I LV P ++E L E
Sbjct: 198 YDEQEKTGLIR-----------NLVVRRGHYSGEIMIILVTTR-----PKIFRVEQLMEH 241
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
L + I S+ N N IFG WR L G+ + + G D +A +F
Sbjct: 242 LTEAFPA------IKSIMQNINDQPGNAIFGKDWRTLYGQDYITDQMLGNDFQIAAPAFY 295
Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q NT + L + + A V D Y+G G IGLS+ A+ + V VE+ E+
Sbjct: 296 QVNTEMAEKLYQTALDFSELTADDVVIDAYSGIGTIGLSV--AKYVKQVYGVEVIPEAVE 353
Query: 337 SFEKTVSRLPKSVDG--NISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ SR ++G N S+ A WL + +DV++VDPPRKGL S + A
Sbjct: 354 N-----SRKNAEINGIANASYVCAPAEEAIQDWLKEGIQADVILVDPPRKGLTESFIKA- 407
Query: 392 QSIGSAERKAKSLSESSSSMVKEEK 416
S+ +K +S + ++M ++ K
Sbjct: 408 -SVSMEPKKITYISCNVATMARDIK 431
>gi|228919350|ref|ZP_04082719.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|423578821|ref|ZP_17554932.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD014]
gi|423638471|ref|ZP_17614123.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD156]
gi|228840286|gb|EEM85558.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|401219752|gb|EJR26403.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD014]
gi|401270787|gb|EJR76806.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD156]
Length = 459
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 90/358 (25%), Positives = 158/358 (44%), Gaps = 47/358 (13%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF---TFDSCRLYGWRCR 103
CP ++ C GC + N R I+V +A + + GL + T + +R +
Sbjct: 80 CPVYEECGGCQLQHLDYKEQLNQKRDIVV-QAFQKYMNNGLEEKIRPTLGMENPWHYRNK 138
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
++L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E
Sbjct: 139 SQLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKK 198
Query: 164 RTGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
+ G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 199 QKGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--IAEV--- 238
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ----QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLN 294
Query: 282 TRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L + +K + + D Y G G IGL L A V+ +++ E+
Sbjct: 295 PEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIADAR 352
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
K R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 353 KNAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|229089548|ref|ZP_04220815.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-42]
gi|228693764|gb|EEL47460.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-42]
Length = 459
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 154/357 (43%), Gaps = 45/357 (12%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF--TFDSCRLYGWRCRA 104
CP ++ C GC + N R I+V + K+ T + +R ++
Sbjct: 80 CPVYEECGGCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKS 139
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E +
Sbjct: 140 QLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQ 199
Query: 165 TGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 200 KGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--IAEV---- 238
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ---QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLNP 295
Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+L + +K + + D Y G G IGL L A V+ +++ E+ K
Sbjct: 296 EQTVVLYNEAKKAAALTGNEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIADARK 353
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 354 NAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|228906231|ref|ZP_04070118.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL
200]
gi|228853387|gb|EEM98157.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL
200]
Length = 459
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 154/357 (43%), Gaps = 45/357 (12%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF--TFDSCRLYGWRCRA 104
CP ++ C GC + N R I+V + K+ T + +R ++
Sbjct: 80 CPVYEECGGCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKS 139
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E +
Sbjct: 140 QLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQ 199
Query: 165 TGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 200 KGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--IAEV---- 238
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ---QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLNP 295
Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+L + +K + + D Y G G IGL L A V+ +++ E+ K
Sbjct: 296 EQTVVLYDEAKKAAALTGNEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIADARK 353
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 354 NAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|424725562|ref|ZP_18154252.1| 23S rRNA (uracil-5-)-methyltransferase RumA, partial [Enterococcus
faecalis ERV73]
gi|402391464|gb|EJV24768.1| 23S rRNA (uracil-5-)-methyltransferase RumA, partial [Enterococcus
faecalis ERV73]
Length = 402
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 145/310 (46%), Gaps = 58/310 (18%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR G +++ +H+++ + H I+AA+ +R +++ +V+PY
Sbjct: 75 YRNKAQIPVRKIDNQLQTGFFRKNSHDLIPMEHFYIQDLEIDAAIVKIRDIMRKYSVKPY 134
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEK-SPNS----DKLES 214
+E D TG+LR++ + Y G++ + L+ +R K P S D LE+
Sbjct: 135 NESDNTGNLRHIVV-----------RRGYHTGEMMVVLI--TRTPKLFPISKIVPDILEA 181
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
+ E + S+ N NVIFGN L G + + + ++
Sbjct: 182 IPEVV--------------SIVQNVNPKRTNVIFGNETILLHGSEKNTDTIFDLKFEISA 227
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
SF Q N + +++ +K+++Y + V D Y G G IGL+L A+ + V +E+ +
Sbjct: 228 RSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTL--AQDAKQVYGIEVIE 285
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSI-------EPLSWLVGS----DVLVVDPPRK 381
E+ K + N +N +N+ E L LV + DV+VVDPPRK
Sbjct: 286 EA-----------VKDAENNAKLNNIENATFTAGLAEELLPKLVENGLQPDVVVVDPPRK 334
Query: 382 GLDSSLVHAL 391
GLD LV+ L
Sbjct: 335 GLDGQLVNTL 344
>gi|229083730|ref|ZP_04216051.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-44]
gi|228699588|gb|EEL52252.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-44]
Length = 458
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 87/357 (24%), Positives = 154/357 (43%), Gaps = 45/357 (12%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF--TFDSCRLYGWRCRA 104
CP + C GC + N R I+V + D T + +R ++
Sbjct: 79 CPVYDECGGCQLQHLDYKEQLNQKRDIVVQAFEKYMNGNVEADIRPTLGMGNPWHYRNKS 138
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+L V + GLY++ +H ++DI HC H N A +++R+ +++LN+ Y+E +
Sbjct: 139 QLQVGRKDEKVITGLYKQNSHQLIDISHCMIQHKATNEATKVVRRILEKLNISIYNEKKQ 198
Query: 165 TGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 199 KGLVRTIVTRAAVQT-------------GEVQVTLI--TTKEELPNKEQF--IAEV---- 237
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ + + S+ N +VIFG++ +L G+ E +G + L+ +F Q N
Sbjct: 238 ---QKQMPTVKSIMQNVNWRKTSVIFGDKTFNLAGKEVIQETLGDLSFELSARAFFQLNP 294
Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+L + +K + + D Y G G IGL LA V+ +++ E+ +K
Sbjct: 295 EQTVVLYNEAKKAAALTGTEKIVDAYCGVGTIGLWLA--NDAAEVRGMDVIPEAIEDAKK 352
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 353 NARRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 406
>gi|229154191|ref|ZP_04282314.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 4342]
gi|228629281|gb|EEK85985.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 4342]
Length = 459
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 155/357 (43%), Gaps = 45/357 (12%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSI--GLLDFTFDSCRLYGWRCRA 104
CP ++ C GC + N R I+V + K+ + T + +R ++
Sbjct: 80 CPVYEECGGCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSLEEKIRPTLGMENPWHYRNKS 139
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E +
Sbjct: 140 QLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQ 199
Query: 165 TGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 200 KGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--IAEV---- 238
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ---QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLNP 295
Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+L + +K + + D Y G G IGL L A V+ +++ E+ K
Sbjct: 296 EQTVVLYNEAKKAAALTGNEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIADARK 353
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 354 NAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|424682604|ref|ZP_18119369.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV129]
gi|402366820|gb|EJV01179.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV129]
Length = 595
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 145/310 (46%), Gaps = 58/310 (18%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR G +++ +H+++ + H I+AA+ +R +++ +V+PY
Sbjct: 177 YRNKAQIPVRKIDNQLQTGFFRKNSHDLIPMEHFYIQDLEIDAAIVKIRDIMRKYSVKPY 236
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEK-SPNS----DKLES 214
+E D TG+LR++ + Y G++ + L+ +R K P S D LE+
Sbjct: 237 NESDNTGNLRHIVV-----------RRGYHTGEMMVVLI--TRTPKLFPISKIVPDILEA 283
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
+ E + S+ N NVIFGN L G + + + ++
Sbjct: 284 IPEVV--------------SIVQNVNPKRTNVIFGNETILLHGSEKNTDTIFDLKFEISA 329
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
SF Q N + +++ +K+++Y + V D Y G G IGL+L A+ + V +E+ +
Sbjct: 330 RSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTL--AQDAKQVYGIEVIE 387
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSI-------EPLSWLVGS----DVLVVDPPRK 381
E+ K + N +N +N+ E L LV + DV+VVDPPRK
Sbjct: 388 EA-----------VKDAENNAKLNNIENATFTAGLAEELLPKLVENGLQPDVVVVDPPRK 436
Query: 382 GLDSSLVHAL 391
GLD LV+ L
Sbjct: 437 GLDGQLVNTL 446
>gi|422347188|ref|ZP_16428101.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens WAL-14572]
gi|373225100|gb|EHP47435.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens WAL-14572]
Length = 455
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 94/374 (25%), Positives = 160/374 (42%), Gaps = 69/374 (18%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDFTFDSCRL-----YGWRCRAK 105
C ++ C GC + + + D D IG LD + L + +R + +
Sbjct: 73 CAIYKRCGGCKLQHASYKVQLDFKWDRVKDCVSKIGKLDPSIVKYPLGMENPWRYRNKVQ 132
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED--- 162
L + + IG + +H+++D+ C + V+L R+ I++ N+ PY+ D
Sbjct: 133 LPIGLINGEVKIGFFAPRSHDIIDMESCLIQDEIGDKVVKLTREWIEKFNIRPYNVDGEY 192
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
D G +R++ + + +V + LV N EK P+ E + + +N
Sbjct: 193 DEKGIVRHIMI-----------RRGFTTNEVMVVLVTNG--EKLPHK---EEFVDLMVKN 236
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
I SV N + NVI G + L GE + +G +++P SF Q N
Sbjct: 237 IPG------IKSVIQNINSKKTNVILGLESKTLWGEDTISDYIGDFRFNISPLSFFQVNP 290
Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
++L K +Y + V D Y G G I L L ++K + V VEI
Sbjct: 291 TQTEVLYGKALEYANLTGNEEVFDAYCGTGTITLFL--SQKAKKVYGVEI---------- 338
Query: 341 TVSRLPKSVDGNISWHNA-DNSIEPLSWLVG---------------SDVLVVDPPRKGLD 384
+P+++D +W NA +N +E + + VG +DV+VVDPPRKG D
Sbjct: 339 ----IPQAIDN--AWINAKENKVENVEFFVGESEVVIPDLINKGVKADVVVVDPPRKGCD 392
Query: 385 SSLVHALQSIGSAE 398
L+ A+ +I + +
Sbjct: 393 KKLLDAITNINAKK 406
>gi|229074352|ref|ZP_04207390.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock4-18]
gi|228708794|gb|EEL60929.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock4-18]
Length = 459
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 154/357 (43%), Gaps = 45/357 (12%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF--TFDSCRLYGWRCRA 104
CP ++ C GC + N R I+V + K+ T + +R ++
Sbjct: 80 CPVYEECGGCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKS 139
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E +
Sbjct: 140 QLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQ 199
Query: 165 TGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 200 KGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--IAEV---- 238
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ---QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLNP 295
Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+L + +K + + D Y G G IGL L A V+ +++ E+ K
Sbjct: 296 EQTVVLYDEAKKAAALTGNEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIADARK 353
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 354 NAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|228989612|ref|ZP_04149596.1| Uncharacterized RNA methyltransferase [Bacillus pseudomycoides DSM
12442]
gi|228770149|gb|EEM18729.1| Uncharacterized RNA methyltransferase [Bacillus pseudomycoides DSM
12442]
Length = 461
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 87/357 (24%), Positives = 153/357 (42%), Gaps = 45/357 (12%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF--TFDSCRLYGWRCRA 104
CP + C GC + N R I+V + D T + +R ++
Sbjct: 80 CPVYDECGGCQLQHLDYKEQLNQKRDIVVQAFEKYMNGSMEADIRPTLGMGNPWHYRNKS 139
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+L V + GLY++ +H ++DI HC H N A +++R+ +++LN+ Y+E +
Sbjct: 140 QLQVGRKDEKVITGLYKQNSHQLIDISHCMIQHKATNEATKVVRRILEKLNISIYNEKKQ 199
Query: 165 TGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 200 KGLVRTIVTRAAVQT-------------GEVQVTLI--TTKEELPNKEQF--IAEV---- 238
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ + + S+ N +VIFG++ +L G+ E +G + L+ +F Q N
Sbjct: 239 ---QKQMPTVKSIMQNVNWRKTSVIFGDKTFNLAGKEVIQETLGDLSFELSARAFFQLNP 295
Query: 283 RAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+L + +K + D Y G G IGL L A V+ +++ E+ +K
Sbjct: 296 EQTVVLYNEAKKAAGLTGKEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIEDAKK 353
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 354 NAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|402553975|ref|YP_006595246.1| RNA methyltransferase [Bacillus cereus FRI-35]
gi|401795185|gb|AFQ09044.1| RNA methyltransferase [Bacillus cereus FRI-35]
Length = 459
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 89/358 (24%), Positives = 159/358 (44%), Gaps = 47/358 (13%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRL---YGWRCR 103
CP ++ C GC + N R I+V +A + + GL + + + + +R +
Sbjct: 80 CPVYEECGGCQLQHLDYKEQLNQKRDIVV-QAFQKYMNNGLEEKIRPTLGMENPWHYRNK 138
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
++L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E
Sbjct: 139 SQLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHRATNEATKVVRRILEKLNVSIYNEKK 198
Query: 164 RTGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
+ G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 199 QKGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--IAEV--- 238
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ----QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLN 294
Query: 282 TRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L + +K + + D Y G G IGL L A V+ +++ E+
Sbjct: 295 PEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIADAR 352
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
K R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 353 KNAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|422859860|ref|ZP_16906504.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK330]
gi|327470743|gb|EGF16199.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK330]
Length = 469
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 87/325 (26%), Positives = 149/325 (45%), Gaps = 38/325 (11%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + G +++ +H+++ I P I+ + R ++ +++P
Sbjct: 138 GYRNKAQVPVRRVNGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKP 197
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R +L + +G++ I LV P ++E L E
Sbjct: 198 YDEQEKTGLIR-----------NLVVRRGHYSGEIMIILVTTR-----PKIFRVEQLIEH 241
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
L + I S+ N N IFG WR L G+ + + G D +A +F
Sbjct: 242 LTEAFPA------IKSIMQNINDQPGNAIFGKDWRTLYGQDYITDQMLGNDFQIAAPAFY 295
Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q NT + L + + A V D Y+G G IGLS+ A+ + V VE+ E+
Sbjct: 296 QVNTEMAEKLYQTALDFSELTADDVVLDAYSGIGTIGLSV--AKHVKEVYGVEVIPEAVE 353
Query: 337 SFEKTVSRLPKSVDG--NISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ SR ++G N S+ A WL + +DV++VDPPRKGL S + A
Sbjct: 354 N-----SRKNAEINGIANASYVCAPAEEAIQDWLKEGIQADVILVDPPRKGLTESFIKA- 407
Query: 392 QSIGSAERKAKSLSESSSSMVKEEK 416
S+ +K +S + ++M ++ K
Sbjct: 408 -SVSMEPKKITYISCNVATMARDIK 431
>gi|148264841|ref|YP_001231547.1| RNA methyltransferase [Geobacter uraniireducens Rf4]
gi|146398341|gb|ABQ26974.1| 23S rRNA m(5)U-1939 methyltransferase [Geobacter uraniireducens
Rf4]
Length = 470
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 93/362 (25%), Positives = 161/362 (44%), Gaps = 54/362 (14%)
Query: 54 CPHFQSCSGCTHEFNLHRPI-------IVDEATDFFKSI--GLLDFTFDSCRLYGWRCRA 104
C SC GC ++ P +V + +K++ +L +S + +R A
Sbjct: 89 CAKGLSCDGCPL-IQMNYPAQLTWKKQLVGKFVRRYKTLEKAVLHDVIESPQQLNYRNSA 147
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
KL + G P+IG+Y+ +H+V+DI C HHP IN + ++ GIK+ V Y+
Sbjct: 148 KLVITGKFAEPIIGIYRRNSHDVLDIGDCPLHHPLINKIITAVKAGIKKGKVPIYNPKSE 207
Query: 165 TGDLRYVQMAVT-TYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNG 223
G LRY+ + V+ T N ++ + V + R + +++ LA+ L
Sbjct: 208 MGLLRYLVIRVSETANRAM------------VVFVTSER-----SYNEIHHLAKHL---- 246
Query: 224 GSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTR 283
++ + + N S+ NVIFG + + E +GG ++P SF Q N+
Sbjct: 247 --QAAVPEVTVIDQNINGSSGNVIFGQKDHFVTKEHVLPAAIGGTRFHISPRSFFQVNSG 304
Query: 284 AFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
A I+ K++++ V DLY G G G+SL A K R V +E+ E
Sbjct: 305 AARIIYEKVREWGALTGKERVLDLYCGIG--GISLFLAGKAREVLGIEV-------VEAA 355
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWLVGS--------DVLVVDPPRKGLDSSLVHALQS 393
V+ + N + N ++ L+G D+++++PPRKG D ++ +
Sbjct: 356 VADAEMNAQLN-NIRNCRFKAGDVARLLGELREEGEKVDLVILNPPRKGCDEQVLRETAA 414
Query: 394 IG 395
IG
Sbjct: 415 IG 416
>gi|228937723|ref|ZP_04100357.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228970603|ref|ZP_04131251.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228977182|ref|ZP_04137581.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
Bt407]
gi|384184500|ref|YP_005570396.1| tRNA (Uracil-5-) -methyltransferase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|410672789|ref|YP_006925160.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus thuringiensis
Bt407]
gi|452196795|ref|YP_007476876.1| RNA methyltransferase, TrmA family [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228782491|gb|EEM30670.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
Bt407]
gi|228789069|gb|EEM37000.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228821931|gb|EEM67925.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|326938209|gb|AEA14105.1| tRNA (Uracil-5-) -methyltransferase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|409171918|gb|AFV16223.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus thuringiensis
Bt407]
gi|452102188|gb|AGF99127.1| RNA methyltransferase, TrmA family [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 459
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 153/357 (42%), Gaps = 45/357 (12%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF--TFDSCRLYGWRCRA 104
CP ++ C GC + N R I+V + K+ T + +R ++
Sbjct: 80 CPVYEECGGCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKS 139
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E +
Sbjct: 140 QLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQ 199
Query: 165 TGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 200 KGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--VAEV---- 238
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ---QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLNP 295
Query: 283 RAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+L + +K + D Y G G IGL L A V+ +++ E+ K
Sbjct: 296 EQTVVLYNEAKKAAALTGDEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIADARK 353
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 354 NAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|357010169|ref|ZP_09075168.1| RNA methyltransferase [Paenibacillus elgii B69]
Length = 507
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 89/305 (29%), Positives = 137/305 (44%), Gaps = 37/305 (12%)
Query: 100 WRCRAKLAV-----RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKEL 154
WR R K V G + G Y +G+H ++D+ C H +A V +++ EL
Sbjct: 173 WRYRNKAQVPIGFAAGEEGGLIGGFYAQGSHRIIDMEACLIQHENNDAVVAAVKRVAGEL 232
Query: 155 NVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLES 214
+ PY+E+ G LR+V +A +NT G++ + LV N R+ P D+L
Sbjct: 233 GIRPYNEETGKGLLRHV-IARYGFNT----------GEIMVVLVTNGRD--IPCRDELVG 279
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
L R + S+ N NVIFG+ R L G ++ +G I +++
Sbjct: 280 LI---------REAIPDVRSICQNVNRQQTNVIFGDETRVLWGSEVIYDTIGDIRFAISA 330
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
SF Q N ++L RK Y +V D Y G G I L L A+K R V VEI
Sbjct: 331 RSFYQVNPVQTEVLYRKALDYAGLSGEETVIDAYCGIGTISLFL--AQKAREVYGVEIVP 388
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVH 389
E+ ++ L + N+ + + W + DV+VVDPPRKG D++L+
Sbjct: 389 EAIEDAKRNA--LVNDIR-NVRFEVGGAEVVIPEWKRQGIAPDVIVVDPPRKGCDAALLE 445
Query: 390 ALQSI 394
+ S+
Sbjct: 446 TILSM 450
>gi|228983684|ref|ZP_04143884.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228776036|gb|EEM24402.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 459
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 155/357 (43%), Gaps = 45/357 (12%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSI--GLLDFTFDSCRLYGWRCRA 104
CP ++ C GC + N R I+V + K+ + T + +R ++
Sbjct: 80 CPVYEECGGCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSLEEKIRPTLGMESPWHYRNKS 139
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E +
Sbjct: 140 QLQVGRKDEKVITGLYKKNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQ 199
Query: 165 TGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 200 KGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--IAEV---- 238
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ---QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLNP 295
Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+L + +K + + D Y G G IGL L A V+ +++ E+ K
Sbjct: 296 EQTVVLYNEAKKAAALTGNEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIADARK 353
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 354 NAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|227517694|ref|ZP_03947743.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
faecalis TX0104]
gi|424677154|ref|ZP_18114014.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV103]
gi|424681242|ref|ZP_18118033.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV116]
gi|424688008|ref|ZP_18124625.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV25]
gi|424689980|ref|ZP_18126517.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV31]
gi|424694805|ref|ZP_18131193.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV37]
gi|424695913|ref|ZP_18132284.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV41]
gi|424702272|ref|ZP_18138434.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV62]
gi|424702509|ref|ZP_18138657.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV63]
gi|424706657|ref|ZP_18142659.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV65]
gi|424716695|ref|ZP_18145997.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV68]
gi|424720869|ref|ZP_18149968.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV72]
gi|424726758|ref|ZP_18155408.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV81]
gi|424742315|ref|ZP_18170638.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV85]
gi|424752471|ref|ZP_18180470.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV93]
gi|227074849|gb|EEI12812.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
faecalis TX0104]
gi|402351836|gb|EJU86708.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV116]
gi|402355511|gb|EJU90284.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV103]
gi|402362206|gb|EJU96743.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV25]
gi|402365483|gb|EJU99903.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV31]
gi|402369692|gb|EJV03963.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV37]
gi|402369836|gb|EJV04094.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV62]
gi|402378906|gb|EJV12730.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV41]
gi|402386891|gb|EJV20385.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV63]
gi|402387170|gb|EJV20659.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV68]
gi|402387325|gb|EJV20806.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV65]
gi|402392735|gb|EJV25979.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV72]
gi|402398638|gb|EJV31571.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV81]
gi|402400618|gb|EJV33435.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV85]
gi|402404661|gb|EJV37278.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV93]
Length = 504
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 145/310 (46%), Gaps = 58/310 (18%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR G +++ +H+++ + H I+AA+ +R +++ +V+PY
Sbjct: 177 YRNKAQIPVRKIDNQLQTGFFRKNSHDLIPMEHFYIQDLEIDAAIVKIRDIMRKYSVKPY 236
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEK-SPNS----DKLES 214
+E D TG+LR++ + Y G++ + L+ +R K P S D LE+
Sbjct: 237 NESDNTGNLRHIVV-----------RRGYHTGEMMVVLI--TRTPKLFPISKIVPDILEA 283
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
+ E + S+ N NVIFGN L G + + + ++
Sbjct: 284 IPEVV--------------SIVQNVNPKRTNVIFGNETILLHGSEKNTDTIFDLKFEISA 329
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
SF Q N + +++ +K+++Y + V D Y G G IGL+L A+ + V +E+ +
Sbjct: 330 RSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTL--AQDAKQVYGIEVIE 387
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSI-------EPLSWLVGS----DVLVVDPPRK 381
E+ K + N +N +N+ E L LV + DV+VVDPPRK
Sbjct: 388 EA-----------VKDAENNAKLNNIENATFTAGLAEELLPKLVENGLQPDVVVVDPPRK 436
Query: 382 GLDSSLVHAL 391
GLD LV+ L
Sbjct: 437 GLDGQLVNTL 446
>gi|350264945|ref|YP_004876252.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus subtilis
subsp. spizizenii TU-B-10]
gi|349597832|gb|AEP85620.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus subtilis
subsp. spizizenii TU-B-10]
Length = 460
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 85/355 (23%), Positives = 155/355 (43%), Gaps = 46/355 (12%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDF-------TFDSCRLYGWRCR 103
CP ++ C GC + + ++ + D + IG LD T + +R +
Sbjct: 77 CPIYKQCGGCQLQHMTYEGQLLFKQKQVKDVLERIGKLDLSNVTVHPTLGMQDPWNYRNK 136
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A++ V + G YQ+ +H+++D+ C + + AV+ ++ + V+ Y+E+
Sbjct: 137 AQVPVGEREGGLVAGFYQQRSHDIIDMSACLIQQSKNDEAVQAVKDICAKYGVKAYNEER 196
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL--ESLAEFLWR 221
G LR++ + RY ++ +V+ +R P+ K+ + A+F
Sbjct: 197 HKGWLRHIMV-------------RYGVVTGEMMIVFITRTNDFPHKAKIIEDITAQF--- 240
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ S+ N + NVIFGN + GE ++ +G + +++ SF Q N
Sbjct: 241 --------PHVKSIVQNINPNKTNVIFGNETNVIWGEEYIYDLIGDVKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L K +Y +V D Y G G I L L A++ + V VEI E+ +
Sbjct: 293 PEQTKVLYDKALEYAELQGEETVIDAYCGIGTISLFL--AKQAKKVYGVEIVSEA-IEDA 349
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
K + L + + A+ I W + +D LVVDPPRKG D +L+ +
Sbjct: 350 KRNAELNGITNAEFAVGEAETVIP--KWYEEGITADTLVVDPPRKGCDEALLRTI 402
>gi|301052142|ref|YP_003790353.1| TrmA family RNA methyltransferase [Bacillus cereus biovar anthracis
str. CI]
gi|300374311|gb|ADK03215.1| RNA methyltransferase, TrmA family [Bacillus cereus biovar
anthracis str. CI]
Length = 459
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 154/357 (43%), Gaps = 45/357 (12%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF--TFDSCRLYGWRCRA 104
CP ++ C GC + N R I+V + K+ T + +R ++
Sbjct: 80 CPVYEECGGCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKS 139
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E +
Sbjct: 140 QLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQ 199
Query: 165 TGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 200 KGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--IAEV---- 238
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ---QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLNP 295
Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+L + +K + + D Y G G IGL L A V+ +++ E+ K
Sbjct: 296 EQTVVLYNEAKKAAALTGNEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIADARK 353
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 354 NAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRIGCDDKLLETILKV 407
>gi|423387093|ref|ZP_17364347.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG1X1-2]
gi|423531512|ref|ZP_17507957.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuB1-1]
gi|401629987|gb|EJS47796.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG1X1-2]
gi|402443962|gb|EJV75854.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuB1-1]
Length = 459
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 153/357 (42%), Gaps = 45/357 (12%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF--TFDSCRLYGWRCRA 104
CP ++ C GC + N R I+V + K+ T + +R ++
Sbjct: 80 CPVYEECGGCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKS 139
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E +
Sbjct: 140 QLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQ 199
Query: 165 TGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 200 KGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--VAEV---- 238
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ---QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLNP 295
Query: 283 RAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+L + +K + D Y G G IGL L A V+ +++ E+ K
Sbjct: 296 EQTIVLYDEAKKAAALTGDEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIADARK 353
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 354 NAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|228963568|ref|ZP_04124721.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar sotto str. T04001]
gi|402562485|ref|YP_006605209.1| RNA methyltransferase [Bacillus thuringiensis HD-771]
gi|423565240|ref|ZP_17541516.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
MSX-A1]
gi|228796086|gb|EEM43541.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar sotto str. T04001]
gi|401194457|gb|EJR01437.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
MSX-A1]
gi|401791137|gb|AFQ17176.1| RNA methyltransferase [Bacillus thuringiensis HD-771]
Length = 459
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 153/357 (42%), Gaps = 45/357 (12%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF--TFDSCRLYGWRCRA 104
CP ++ C GC + N R I+V + K+ T + +R ++
Sbjct: 80 CPVYEECGGCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKS 139
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E +
Sbjct: 140 QLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQ 199
Query: 165 TGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 200 KGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--VAEV---- 238
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ---QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLNP 295
Query: 283 RAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+L + +K + D Y G G IGL L A V+ +++ E+ K
Sbjct: 296 EQTIVLYDEAKKAAALTGDEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIADARK 353
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 354 NAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|293375600|ref|ZP_06621874.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sanguinis
PC909]
gi|292645817|gb|EFF63853.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sanguinis
PC909]
Length = 459
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 102/386 (26%), Positives = 175/386 (45%), Gaps = 62/386 (16%)
Query: 54 CPHFQSCSGCTHEFNLHRP----IIVDEATDFFKSIGLLDFTFDSCRL------YGWRCR 103
C ++ C GC + +L+ P + D + FK IG ++ D+ L WR R
Sbjct: 78 CKIYKQCGGCQVQ-HLNYPGQLQMKYDTVVNQFKRIGHIE---DANILPTIGMEEPWRYR 133
Query: 104 AKLAV-RGTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDE 161
K V G + ++ G YQ+ +H ++D+ HC + + +R ++L + PY+E
Sbjct: 134 NKTQVPFGLANGDVVAGFYQKRSHEIIDMRHCLIQTEISDEIIHEMRGICRDLKLSPYNE 193
Query: 162 DDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
+ TG LR+V + T + T +I ++ +R EK N D++
Sbjct: 194 ESNTGILRHV-IVRTGFKTD------------EIMVILVTRKEKIINMDRIV-------- 232
Query: 222 NGGSRSREHY--IHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
SR E + I + N + N I G + + GE ++ + GI +++P SF Q
Sbjct: 233 ---SRLLEKFPQIKVIAQNINPNVTNAILGEKTNIIYGEGYIYDEMNGIRFAISPRSFYQ 289
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAA-ARKCRSVKCV-----EIN 331
N + L K ++ V D Y G G I L LA A+K V+ + + N
Sbjct: 290 VNPVQTETLYSKAVEFAGLTGEEIVFDAYCGIGTITLFLAQHAKKVYGVEIIPEAIADAN 349
Query: 332 KESQLS-FEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHA 390
++L+ FE T + KS + +W + I P DV+VVDPPRKG D +L+
Sbjct: 350 MNAKLNGFENTEFAVGKSEEVIPAW--IEQGIVP-------DVIVVDPPRKGCDKTLLDT 400
Query: 391 LQSIGSAERKAKSLSESSSSMVKEEK 416
+ + +A ++ +S SS++ ++ K
Sbjct: 401 M--LEAAPKRIVYVSCDSSTLARDVK 424
>gi|218895544|ref|YP_002443955.1| TrmA family RNA methyltransferase [Bacillus cereus G9842]
gi|218542488|gb|ACK94882.1| RNA methyltransferase, TrmA family [Bacillus cereus G9842]
Length = 459
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 153/357 (42%), Gaps = 45/357 (12%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF--TFDSCRLYGWRCRA 104
CP ++ C GC + N R I+V + K+ T + +R ++
Sbjct: 80 CPVYEECGGCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKS 139
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E +
Sbjct: 140 QLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQ 199
Query: 165 TGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 200 KGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--VAEV---- 238
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ---QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLNP 295
Query: 283 RAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+L + +K + D Y G G IGL L A V+ +++ E+ K
Sbjct: 296 EQTIVLYDEAKKAAALTGDEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIADARK 353
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 354 NAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|153940444|ref|YP_001392724.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
F str. Langeland]
gi|384463688|ref|YP_005676283.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
F str. 230613]
gi|152936340|gb|ABS41838.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
F str. Langeland]
gi|295320705|gb|ADG01083.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
F str. 230613]
Length = 461
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 92/375 (24%), Positives = 158/375 (42%), Gaps = 85/375 (22%)
Query: 54 CPHFQSCSGCT---------HEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRL------- 97
CP ++ C GC EF R I D + IG LD D ++
Sbjct: 77 CPIYKQCGGCQVQHYSYKAQLEFKKQRVI------DSLERIGKLDI--DKIKIEDTIGME 128
Query: 98 --YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELN 155
Y +R + ++ VR IG Y+ TH V D+ C + + ++++R + + N
Sbjct: 129 NPYRYRNKIQMPVRFEKGEIKIGFYKSRTHEVADVKECFIQDEQADKIIQIIRNWMVKHN 188
Query: 156 VEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL--E 213
+ Y+E+ G +R++ + + ++N ++ + +V N + E+ P ++L E
Sbjct: 189 ISAYNEETGKGFIRHIMV-----------RKAFKNKELMLVIVTN-KEEEIPYKEELINE 236
Query: 214 SLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLA 273
+ EF I S+ N T NVI G + L G+ + + +++
Sbjct: 237 VIKEF-----------SNIKSIIQNINTKKTNVILGEKCITLWGKDIITDYIDKFKFNIS 285
Query: 274 PSSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEIN 331
P SF Q N ++L +K ++ V D Y G G I L L ++K + V VEI
Sbjct: 286 PLSFFQVNPIQTEVLYKKALEFANLKGEEIVFDAYCGTGTISLFL--SQKAKKVYGVEII 343
Query: 332 KESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVG---------------SDVLVV 376
KE ++D N + +N I+ + VG +DV+VV
Sbjct: 344 KE--------------AID-NAKDNAKENKIDNAEFFVGKSEEVIPDLIDKGIKADVVVV 388
Query: 377 DPPRKGLDSSLVHAL 391
DPPRKG + +L+ A+
Sbjct: 389 DPPRKGCEKTLLEAI 403
>gi|16077741|ref|NP_388555.1| RNA methyltransferase [Bacillus subtilis subsp. subtilis str. 168]
gi|221308510|ref|ZP_03590357.1| hypothetical protein Bsubs1_03798 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221312833|ref|ZP_03594638.1| hypothetical protein BsubsN3_03754 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221317757|ref|ZP_03599051.1| hypothetical protein BsubsJ_03708 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221322036|ref|ZP_03603330.1| hypothetical protein BsubsS_03794 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|402774900|ref|YP_006628844.1| methyltransferase [Bacillus subtilis QB928]
gi|418034239|ref|ZP_12672715.1| hypothetical protein BSSC8_36590 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|452912736|ref|ZP_21961364.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus subtilis
MB73/2]
gi|50401309|sp|O31503.1|RLMCD_BACSU RecName: Full=23S rRNA (uracil-C(5))-methyltransferase RlmCD;
AltName: Full=23S rRNA
(uracil(1939)-C(5))-methyltransferase; AltName: Full=23S
rRNA (uracil(747)-C(5))-methyltransferase
gi|2632987|emb|CAB12493.1| methyltransferase of m5U747 and m5U1939 in 23S RNA [Bacillus
subtilis subsp. subtilis str. 168]
gi|351469183|gb|EHA29379.1| hypothetical protein BSSC8_36590 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|402480085|gb|AFQ56594.1| Methyltransferase of m5U747 and m5U1939 in 23SRNA [Bacillus
subtilis QB928]
gi|407956354|dbj|BAM49594.1| RNA methyltransferase [Bacillus subtilis BEST7613]
gi|407963625|dbj|BAM56864.1| RNA methyltransferase [Bacillus subtilis BEST7003]
gi|452117764|gb|EME08158.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus subtilis
MB73/2]
Length = 459
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 85/355 (23%), Positives = 155/355 (43%), Gaps = 46/355 (12%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDF-------TFDSCRLYGWRCR 103
CP ++ C GC + + ++ + D + IG LD T + +R +
Sbjct: 77 CPIYKQCGGCQLQHMTYEGQLLFKQKQVKDVLERIGKLDLSKVTVHPTLGMEDPWNYRNK 136
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A++ V + G YQ+ +H+++D+ C + + AV+ ++ V+ Y+E+
Sbjct: 137 AQVPVGEREGGLVAGFYQQRSHDIIDMSACLIQQSKNDEAVQAVKDICANYGVKAYNEER 196
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL--ESLAEFLWR 221
G LR++ + RY ++ +V+ +R P+ K+ + A+F
Sbjct: 197 HKGWLRHIMV-------------RYGVVTGEMMIVFITRTSDFPHKAKIIEDITAQF--- 240
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ S+ N + NVIFGN + GE ++ +G + +++ SF Q N
Sbjct: 241 --------PHVKSIVQNINPNKTNVIFGNETNVIWGEEYIYDLIGDVKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L K +Y +V D Y G G I L L A++ + V VEI E+ +
Sbjct: 293 PEQTKVLYDKALEYAELQGEETVIDAYCGIGTISLFL--AKQAKKVYGVEIVPEA-IEDA 349
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
K + L + + + A+ I W + +D LVVDPPRKG D +L+ +
Sbjct: 350 KRNAELNGNTNAEFAVGEAETVIP--KWYEEGITADTLVVDPPRKGCDEALLRTI 402
>gi|399887891|ref|ZP_10773768.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium arbusti
SL206]
Length = 483
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 146/314 (46%), Gaps = 56/314 (17%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
Y +R + +L V ++G Y +H+++D+ C H + V +++Q +K+ N+
Sbjct: 156 YRYRNKVQLPVGTIRDEFVVGFYSPRSHDIIDMEECYIQHEVGDKVVAIIKQWLKKYNIP 215
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
YDE G +R++ + + ++ + I LV + N P+ + E
Sbjct: 216 IYDEKTGAGLVRHIMV-----------RKAFKTEETMIVLVTSKEN--IPHEE------E 256
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
F+ N S++ + + S+ N T NVI G + + L G++D +N+G +++P SF
Sbjct: 257 FI--NLMSKNIDGLV-SIVQNINTKNTNVILGLKCKTLWGKSDIVDNIGDFKFNISPLSF 313
Query: 278 GQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q N +IL K +Y + V D Y G G I L L ++K + V VEI
Sbjct: 314 FQVNPVQTEILYNKALEYANLQGNEIVFDAYCGTGTISLFL--SQKAKKVYGVEI----- 366
Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVG---------------SDVLVVDPPR 380
+P++++ N + N I+ + ++VG +DV++VDPPR
Sbjct: 367 ---------IPEAIE-NAKINAKQNDIDNVEFMVGDAEKVIPEIINSGVKADVVIVDPPR 416
Query: 381 KGLDSSLVHALQSI 394
KG + SL+ A+ +
Sbjct: 417 KGCEKSLLEAMAKM 430
>gi|422876112|ref|ZP_16922582.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK1056]
gi|332362548|gb|EGJ40348.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK1056]
Length = 465
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 85/325 (26%), Positives = 152/325 (46%), Gaps = 38/325 (11%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + G +++ +H+++ I P I+ + R ++ +++P
Sbjct: 138 GYRNKAQVPVRRVNGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKP 197
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R +L + +G++ + LV P ++E L E
Sbjct: 198 YDEQEKTGLIR-----------NLVVRRGHYSGEIMLILVTTR-----PKIFRVEQLMEH 241
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
L + I S+ N N IFG WR L G+ + + G D +A +F
Sbjct: 242 LTEAFPA------IKSIMQNINDQPGNAIFGKDWRTLYGQDYITDQMLGHDFQIAAPAFY 295
Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q NT + L + + + V D Y+G G IGLS+ A++ + V VE+ E+
Sbjct: 296 QVNTEMAEKLYQTAIDFSELTSDDVVLDAYSGIGTIGLSV--AKQVKQVYGVEVIPEAVK 353
Query: 337 SFEKTVSRLPKSVDG--NISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ SR +++G N S+ A +WL + +DV++VDPPRKGL S + A
Sbjct: 354 N-----SRKNAAINGITNASYVCAPAEEAIQNWLKEGIQADVILVDPPRKGLTESFIKA- 407
Query: 392 QSIGSAERKAKSLSESSSSMVKEEK 416
S+ +K +S + ++M ++ K
Sbjct: 408 -SVSMEPKKITYISCNVATMARDIK 431
>gi|229171271|ref|ZP_04298861.1| Uncharacterized RNA methyltransferase [Bacillus cereus MM3]
gi|423404870|ref|ZP_17382043.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG2X1-2]
gi|423461507|ref|ZP_17438304.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG5X2-1]
gi|423479707|ref|ZP_17456421.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG6X1-1]
gi|228612228|gb|EEK69460.1| Uncharacterized RNA methyltransferase [Bacillus cereus MM3]
gi|401136645|gb|EJQ44232.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG5X2-1]
gi|401646176|gb|EJS63808.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG2X1-2]
gi|402424933|gb|EJV57095.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG6X1-1]
Length = 459
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 90/358 (25%), Positives = 157/358 (43%), Gaps = 47/358 (13%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF---TFDSCRLYGWRCR 103
CP ++ C GC + N R I+V +A + + + L + T + +R +
Sbjct: 80 CPVYEECGGCQLQHLDYKEQLNQKRDIVV-QAFEKYMNNSLEEKIRPTLGMENPWHYRNK 138
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
++L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E
Sbjct: 139 SQLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKK 198
Query: 164 RTGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
+ G +R + + AV T G+VQ+TL+ + E+ PN D+ +AE
Sbjct: 199 QKGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKDQF--IAEV--- 238
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ----QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLN 294
Query: 282 TRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L + +K + D Y G G IGL LA V+ +++ E+
Sbjct: 295 PEQTVVLYDEAKKAAALTGDEKIVDAYCGVGTIGLWLA--NDAAEVRGMDVIPEAIEDAR 352
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
K R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 353 KNAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|110800984|ref|YP_694814.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens ATCC 13124]
gi|110675631|gb|ABG84618.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens ATCC 13124]
Length = 455
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 94/374 (25%), Positives = 161/374 (43%), Gaps = 69/374 (18%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDFTFDSCRL-----YGWRCRAK 105
C ++ C GC + ++ + D D IG LD + L + +R + +
Sbjct: 73 CAIYKRCGGCKLQHASYKAQLDFKWDRVKDCVSKIGKLDPSIVKYPLGMEEPWRYRNKVQ 132
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED--- 162
L + + IG + +H+++D+ C + V+L R+ I++ N+ PY+ D
Sbjct: 133 LPIGLINGEVKIGFFAPRSHDIIDMESCLIQDEIGDKVVKLTREWIEKFNIRPYNVDGEY 192
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
D G +R++ + + +V + LV N EK P+ E + + +N
Sbjct: 193 DEKGIVRHIMI-----------RRGFTTNEVMVVLVTNG--EKLPHK---EEFVDLMVKN 236
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
I SV N + NVI G + L GE + +G +++P SF Q N
Sbjct: 237 IPG------IKSVIQNINSKKTNVILGLESKTLWGEDTISDYIGDFRFNISPLSFFQVNP 290
Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
++L K +Y + V D Y G G I L L ++K + V VEI
Sbjct: 291 TQTEVLYGKALEYANLTGNEEVFDAYCGTGTITLFL--SQKAKKVYGVEI---------- 338
Query: 341 TVSRLPKSVDGNISWHNA-DNSIEPLSWLVG---------------SDVLVVDPPRKGLD 384
+P+++D +W NA +N +E + + VG +DV+VVDPPRKG D
Sbjct: 339 ----IPQAIDN--AWINAKENKVENVEFFVGESEVVIPDLINKGVKADVVVVDPPRKGCD 392
Query: 385 SSLVHALQSIGSAE 398
L+ A+ +I + +
Sbjct: 393 KKLLDAITNINAKK 406
>gi|423363083|ref|ZP_17340582.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD022]
gi|401076517|gb|EJP84871.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD022]
Length = 459
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 153/357 (42%), Gaps = 45/357 (12%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF--TFDSCRLYGWRCRA 104
CP ++ C GC + N R I+V + K+ T + +R ++
Sbjct: 80 CPVYEECGGCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKS 139
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E +
Sbjct: 140 QLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQ 199
Query: 165 TGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 200 KGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--VAEV---- 238
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ---QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLNP 295
Query: 283 RAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+L + +K + D Y G G IGL L A V+ +++ E+ K
Sbjct: 296 EQTIVLYDEAKKAAALTGDEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIADARK 353
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 354 NAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|401681596|ref|ZP_10813494.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
AS14]
gi|400185982|gb|EJO20201.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
AS14]
Length = 457
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 86/327 (26%), Positives = 152/327 (46%), Gaps = 42/327 (12%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + G +++ +H+++ I P I+ + R ++ +++P
Sbjct: 125 GYRNKAQVPVRRVNGQLETGFFRKNSHDLLQIEDFYIQDPVIDQVILFTRDLLRRFDLKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R +L + +G++ + LV P ++E L E
Sbjct: 185 YDEQEKTGLIR-----------NLVVRRGHYSGEIMVILVTTR-----PKIFRVEQLME- 227
Query: 219 LWRNGGSRSREHY--IHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
R E + I S+ N N IFG WR L G+ + + G D +A +
Sbjct: 228 -------RLTEAFPAIKSIMQNINDQPGNAIFGKDWRTLYGQDYITDQMLGNDFQIAAPA 280
Query: 277 FGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q NT + L + + + V D Y+G G IGLS+ A+ + V VE+ E+
Sbjct: 281 FYQVNTEMAEKLYQTAIDFSELTSDDVVLDAYSGIGTIGLSV--AKHVKQVYGVEVIPEA 338
Query: 335 QLSFEKTVSRLPKSVDG--NISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVH 389
+ SR +++G N S+ A +WL + +DV++VDPPRKGL S +
Sbjct: 339 VEN-----SRKNAAINGITNASYVCAPAEEAIQNWLKEGIQADVILVDPPRKGLTESFIK 393
Query: 390 ALQSIGSAERKAKSLSESSSSMVKEEK 416
A S+ +K +S + ++M ++ K
Sbjct: 394 A--SVSMEPQKITYISCNVATMARDIK 418
>gi|449093386|ref|YP_007425877.1| putative RNA methyltransferase [Bacillus subtilis XF-1]
gi|449027301|gb|AGE62540.1| putative RNA methyltransferase [Bacillus subtilis XF-1]
Length = 463
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 87/354 (24%), Positives = 155/354 (43%), Gaps = 44/354 (12%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDF-------TFDSCRLYGWRCR 103
CP ++ C GC + + ++ + D + IG LD T + +R +
Sbjct: 77 CPIYKQCGGCQLQHMTYEGQLLFKQKQVKDVLERIGKLDLSNVTVHPTLGMEDPWNYRNK 136
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A++ V + G YQ+ +H+++D+ C + + AV+ ++ + V+ Y+E+
Sbjct: 137 AQVPVGEREGGLVAGFYQQRSHDIIDMSACLIQQSKNDEAVQAVKDICAKYGVKAYNEER 196
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL--ESLAEFLWR 221
G LR++ + RY ++ +V+ +R P+ K+ + A F
Sbjct: 197 HKGWLRHIMV-------------RYGVVTGEMMIVFITRTNDFPHKAKIIEDITAAF--- 240
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ S+ N + NVIFGN + GE ++ +G + +++ SF Q N
Sbjct: 241 --------PHVKSIVQNINPNKTNVIFGNETNVIWGEEYIYDLIGDVKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L K +Y +V D Y G G I L L A+K + V VEI E+ +
Sbjct: 293 PEQTKVLYDKALEYAELQGEETVIDAYCGIGTISLFL--AKKAKKVYGVEIVPEA-IEDA 349
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHAL 391
K + L + + A+ I P + G +D LVVDPPRKG D +L+ +
Sbjct: 350 KRNAELNGITNAEFAVGEAETVI-PKRYEEGITADTLVVDPPRKGCDEALLRTI 402
>gi|256848539|ref|ZP_05553980.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
coleohominis 101-4-CHN]
gi|256714591|gb|EEU29571.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
coleohominis 101-4-CHN]
Length = 474
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 93/341 (27%), Positives = 148/341 (43%), Gaps = 64/341 (18%)
Query: 74 IVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVD 129
+V E+ FK G + T S + YG+R +A+ +R + + GLY+ G+H VVD
Sbjct: 119 MVIESLAKFKPRGYRHYEVRPTIGSEKQYGYRNKAQFQIRQQNGKVVAGLYRSGSHEVVD 178
Query: 130 IPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYR 189
+ C P I + L I +L + YDE + +G L+ ++ E
Sbjct: 179 MQECAVQMPGIMRVMRALVDKIAQLKIPLYDESNHSGILK-----------TIVVRESAT 227
Query: 190 NGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFG 249
++Q+T + N SP K L F+ S + SV N +++G
Sbjct: 228 THQIQVTFITN-----SPKLLKKHQLLTFIAEKLPS------VVSVMQNINPGDTPLVWG 276
Query: 250 NRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVT--DLYA 307
HL G++ +++ G+D L+ SF Q N + L + K + ++ T D YA
Sbjct: 277 TETIHLAGDSYITDSLMGLDFHLSARSFLQLNPYQTETLYEEAAKAMELTSTDTLIDAYA 336
Query: 308 GAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSV-DGNISWHNAD-NSIEPL 365
G G IGL+LA+ + V+ +EI +P++V D N NA N+I
Sbjct: 337 GIGTIGLALAS--RVHEVRGMEI--------------IPEAVADAN---QNATLNNITNA 377
Query: 366 SWLVGS---------------DVLVVDPPRKGLDSSLVHAL 391
+ GS D LVVDPPR GLD+ L+ +
Sbjct: 378 KYETGSAEELLPKWRAEGLHFDALVVDPPRTGLDNKLIQQI 418
>gi|325836777|ref|ZP_08166244.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sp. HGF1]
gi|325491155|gb|EGC93444.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sp. HGF1]
Length = 459
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 102/386 (26%), Positives = 175/386 (45%), Gaps = 62/386 (16%)
Query: 54 CPHFQSCSGCTHEFNLHRP----IIVDEATDFFKSIGLLDFTFDSCRL------YGWRCR 103
C ++ C GC + +L+ P + D + FK IG ++ D+ L WR R
Sbjct: 78 CKIYKQCGGCQVQ-HLNYPGQLQMKYDTVVNQFKRIGHIE---DANILPTIGMEEPWRYR 133
Query: 104 AKLAV-RGTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDE 161
K V G + ++ G YQ+ +H ++D+ HC + + +R ++L + PY+E
Sbjct: 134 NKTQVPFGLANGDVVAGFYQKRSHEIIDMRHCLIQTEISDEIIHEMRGICRDLKLSPYNE 193
Query: 162 DDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
+ TG LR+V + T + T +I ++ +R EK N D++
Sbjct: 194 ESNTGILRHV-IVRTGFKTD------------EIMVILVTRKEKIINMDRIV-------- 232
Query: 222 NGGSRSREHY--IHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
SR E + I + N + N I G + + GE ++ + GI +++P SF Q
Sbjct: 233 ---SRLLEKFPQIKVIAQNINPNVTNAILGEKTNIIYGEGYIYDEMNGIGFAISPRSFYQ 289
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAA-ARKCRSVKCV-----EIN 331
N + L K ++ V D Y G G I L LA A+K V+ + + N
Sbjct: 290 VNPVQTETLYSKAVEFAGLTGEEIVFDAYCGIGTITLFLAQHAKKVYGVEIIPEAIADAN 349
Query: 332 KESQLS-FEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHA 390
++L+ FE T + KS + +W + I P DV+VVDPPRKG D +L+
Sbjct: 350 MNAKLNGFENTEFAVGKSEEVIPAW--IEQGIVP-------DVIVVDPPRKGCDKTLLDT 400
Query: 391 LQSIGSAERKAKSLSESSSSMVKEEK 416
+ + +A ++ +S SS++ ++ K
Sbjct: 401 M--LEAAPKRIVYVSCDSSTLARDIK 424
>gi|288554996|ref|YP_003426931.1| RNA methyltransferase [Bacillus pseudofirmus OF4]
gi|288546156|gb|ADC50039.1| RNA methyltransferase, TrmA family [Bacillus pseudofirmus OF4]
Length = 459
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 92/351 (26%), Positives = 154/351 (43%), Gaps = 40/351 (11%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIG-LLDF----TFDSCRLYGWRCRAK 105
CP + C GC + + + + D IG + D T + +R +A+
Sbjct: 78 CPIYHQCGGCQLQHMSYEAQLTYKQKQVKDVLARIGQITDIPVHPTLGMNDPWRYRNKAQ 137
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
+ V + G YQE +H ++D+ C H + V +++ K+ + YDED
Sbjct: 138 VPVGEEEGGLIAGFYQERSHRIIDMDECLIQHQENDDVVSKVKEIAKKYGIRGYDEDKHK 197
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRNGG 224
G LR+V V Y + G + + LV +R ++ PN + E + E +
Sbjct: 198 GTLRHV---VARYGK--------QTGDIMVVLV--TRGKELPNKKNIIEEIRESIPD--- 241
Query: 225 SRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRA 284
+ S+ N NVIFG++ L G+ ++++G I +++ SF Q N
Sbjct: 242 -------VKSIVQNINPKRTNVIFGDQTIVLWGDEYIYDSIGDIRFAISARSFYQVNPDQ 294
Query: 285 FDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTV 342
+L K +Y +V D Y G G I L L A+K + V VEI E+ +S K
Sbjct: 295 TKVLYDKALEYADLKGDETVIDAYCGIGTISLFL--AQKAKHVYGVEIVPEA-ISDAKKN 351
Query: 343 SRLPKSVDGNISWHNADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHAL 391
+ + + + + A+N + P + G DV+VVDPPRKG D L+ +
Sbjct: 352 AEINGFTNVDFAVGEAEN-VMPWWYAQGIRPDVIVVDPPRKGCDEKLLETI 401
>gi|148381310|ref|YP_001255851.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A str. ATCC 3502]
gi|153931489|ref|YP_001385686.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A str. ATCC 19397]
gi|153937212|ref|YP_001389092.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A str. Hall]
gi|148290794|emb|CAL84928.1| putative RNA methyltransferase [Clostridium botulinum A str. ATCC
3502]
gi|152927533|gb|ABS33033.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A str. ATCC 19397]
gi|152933126|gb|ABS38625.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A str. Hall]
Length = 461
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 92/375 (24%), Positives = 157/375 (41%), Gaps = 85/375 (22%)
Query: 54 CPHFQSCSGCT---------HEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRL------- 97
CP ++ C GC EF R I D + IG LD D ++
Sbjct: 77 CPIYKQCGGCQVQHYSYKAQLEFKKQRVI------DSLERIGKLDI--DKIKIEDTIGME 128
Query: 98 --YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELN 155
Y +R + ++ VR IG Y+ TH V D+ C + + ++++R + + N
Sbjct: 129 NPYRYRNKIQMPVRFEKGEIKIGFYKSRTHEVADVKECFIQDEQADKIIQIIRNWMVKHN 188
Query: 156 VEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL--E 213
+ Y+E+ G +R++ + + ++N ++ + +V N + E+ P + L E
Sbjct: 189 ISAYNEETGKGFIRHIMV-----------RKAFKNKELMLVIVTN-KEEEIPYKEGLINE 236
Query: 214 SLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLA 273
+ EF I S+ N T NVI G + L G+ + + +++
Sbjct: 237 VIKEF-----------SNIKSIIQNINTKKTNVILGEKCITLWGKDTITDYIDKFKFNIS 285
Query: 274 PSSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEIN 331
P SF Q N ++L +K ++ V D Y G G I L L ++K + V VEI
Sbjct: 286 PLSFFQVNPIQTEVLYKKALEFANLKGEEIVFDAYCGTGTISLFL--SQKAKKVYGVEII 343
Query: 332 KESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVG---------------SDVLVV 376
KE ++D N + +N I+ + VG +DV+VV
Sbjct: 344 KE--------------AID-NAKDNAKENKIDNAEFFVGKSEEVIPDLIDKGIKADVVVV 388
Query: 377 DPPRKGLDSSLVHAL 391
DPPRKG + +L+ A+
Sbjct: 389 DPPRKGCEKTLLEAI 403
>gi|149180724|ref|ZP_01859227.1| YefA [Bacillus sp. SG-1]
gi|148851514|gb|EDL65661.1| YefA [Bacillus sp. SG-1]
Length = 457
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 94/353 (26%), Positives = 154/353 (43%), Gaps = 44/353 (12%)
Query: 54 CPHFQSCSGC-THEFNLHRPIIVDE--ATDFFKSIGLL-DFTFDSCRLYG--WRCRAKLA 107
CP + C GC + + E D IG L D WR R K A
Sbjct: 78 CPIYHQCGGCQVQHISYEGQLKAKEKHVRDVMARIGKLPDVPVHPTLGMENPWRYRNKAA 137
Query: 108 V-RGTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
V G L+ G YQ+ +H ++D+ C H + + V+ +++ ++ + PY+E+
Sbjct: 138 VPVGEREGGLVAGFYQQRSHEIIDMERCVIQHEKNDEIVQKVKEICQKYGIRPYNEEKHR 197
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGS 225
G LR++ +T Y Y+ G+V + LV +R PN +++ + E + G
Sbjct: 198 GTLRHI---MTRYG--------YQTGEVMVVLV--TRTADLPNKNQI--VDEIVSSIEG- 241
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
+ SV N + NVI G+ L GE ++ +G + +++ SF Q N
Sbjct: 242 ------VKSVIQNVNSKRTNVIMGDETNVLWGEEVIYDYIGDVKFAISARSFYQVNPEQT 295
Query: 286 DILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
+L K +Y +V D Y G G I L L A+K + V VEI ++ +K
Sbjct: 296 RVLYEKALEYADLSGDENVIDAYCGIGTISLFL--AQKAKKVYGVEIVPQAIEDAKKNA- 352
Query: 344 RLPKSVDG--NISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
++G N + + W + +DVLVVDPPRKG D +L++ +
Sbjct: 353 ----ELNGFTNTEFEAGPAEVVIPRWYDEGIKADVLVVDPPRKGCDEALLNTI 401
>gi|312868954|ref|ZP_07729134.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus oris
PB013-T2-3]
gi|311095518|gb|EFQ53782.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus oris
PB013-T2-3]
Length = 497
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 153/327 (46%), Gaps = 38/327 (11%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
Y +R +A+ VR GLY+ +H++VD+ C PR V + Q I++L +
Sbjct: 170 YHYRNKAQFQVRMVDGHVAAGLYKPNSHDLVDMQECAVQMPRTMKVVRTVVQLIEDLQIP 229
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRN--EKSPNSDKLESL 215
Y+ED +G ++ ++ E + GK+Q+TL+ N+ K P LE++
Sbjct: 230 VYEEDHNSGIIK-----------TIVVRESWTTGKLQLTLITNTPKLIHKRP---LLEAI 275
Query: 216 AEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPS 275
A+ L + SV N +++G + HL G+ E++ G+D L+
Sbjct: 276 AQQLPE----------VVSVMQNVNPGDTPLVWGEQMIHLAGKETITESLMGLDFELSAR 325
Query: 276 SFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
SF Q N + L ++ + + ++ D YAG G IGLSLA+ + ++V+ +E+ E
Sbjct: 326 SFLQLNPEQTEALYEQVAEALELAPEDTLIDAYAGIGTIGLSLAS--RVKAVRGMEVIPE 383
Query: 334 SQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHA 390
+ ++ ++L + A+ + WL + D LVVDPPR GLD L+
Sbjct: 384 A-VADANANAKLNGITNTQYEVGKAEELMP--RWLDEGLQFDALVVDPPRTGLDDELIK- 439
Query: 391 LQSIGSAERKAKSLSESSSSMVKEEKR 417
Q + RK +S +S+ + +R
Sbjct: 440 -QILRVKPRKFAYVSCGMASLARNLRR 465
>gi|422872939|ref|ZP_16919424.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens F262]
gi|380306197|gb|EIA18471.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens F262]
Length = 455
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 94/374 (25%), Positives = 161/374 (43%), Gaps = 69/374 (18%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDFTFDSCRL-----YGWRCRAK 105
C ++ C GC + ++ + D D IG LD + L + +R + +
Sbjct: 73 CAIYKRCGGCKLQHASYKAQLDFKWDRVKDCVSKIGKLDPSIVKYPLGMENPWRYRNKVQ 132
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED--- 162
L + + IG + +H+++D+ C + V+L R+ I++ N+ PY+ D
Sbjct: 133 LPIGLINGEVKIGFFAPRSHDIIDMESCLIQDEIGDKVVKLTREWIEKFNIRPYNVDGEY 192
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
D G +R++ + + +V + LV N EK P+ E + + +N
Sbjct: 193 DEKGIVRHIMI-----------RRGFTTNEVMVVLVTNG--EKLPHK---EEFVDLMVKN 236
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
I SV N + NVI G + L GE + +G +++P SF Q N
Sbjct: 237 IPG------IKSVIQNINSKKTNVILGLESKTLWGEDTISDYIGDFRFNISPLSFFQVNP 290
Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
++L K +Y + V D Y G G I L L ++K + V VEI
Sbjct: 291 TQTEVLYGKALEYANLTGNEEVFDAYCGTGTITLFL--SQKAKKVYGVEI---------- 338
Query: 341 TVSRLPKSVDGNISWHNA-DNSIEPLSWLVG---------------SDVLVVDPPRKGLD 384
+P+++D +W NA +N +E + + VG +DV+VVDPPRKG D
Sbjct: 339 ----IPQAIDN--AWINAKENKVENVEFFVGESEVVIPDLINKGVKADVVVVDPPRKGCD 392
Query: 385 SSLVHALQSIGSAE 398
L+ A+ +I + +
Sbjct: 393 KKLLDAITNIDAKK 406
>gi|253576638|ref|ZP_04853966.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251844052|gb|EES72072.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 483
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 93/358 (25%), Positives = 158/358 (44%), Gaps = 54/358 (15%)
Query: 54 CPHFQSCSGC-----THEFNLH-RPIIVDEATDFFKSIGLLDFTFDSC----RLYGWRCR 103
CP F C GC ++E L + I+ EA F + GL D +G+R +
Sbjct: 102 CPVFGICGGCQIQHLSYEGQLAGKEEIIREA--FARYAGLQDVRLKPMLGMDHPWGYRNK 159
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A+L + + + GLY +H ++DI C HP++N V+ R ++ L + Y E
Sbjct: 160 AQLQLGMSQEGMIAGLYAADSHKLIDITGCPIQHPKVNEVVDKTRDVLQRLGIPVYKEKS 219
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNG 223
G +R + + V +++G++Q+TLV + N+K P ++L + E
Sbjct: 220 NQGLVRTIVVRVG-----------FQSGQLQVTLV--TANDKLPRREQL--VKEL----- 259
Query: 224 GSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTR 283
R + S+ N +++FGNR L G E++G ++ +L+P +F Q N
Sbjct: 260 --RLAMPELTSIAMNVNPKNTSLVFGNRTEILWGADSIQESLGDLEFTLSPRAFFQLNP- 316
Query: 284 AFDILLRKLQKYVPYGA------SVTDLYAGAGVIGLSLAA-ARKCRSVKCVEINKESQL 336
+ KL + V A +V D Y G G IGL LA A++ R ++ +
Sbjct: 317 ---LQTVKLYESVRAAAGLTGKETVVDAYCGTGTIGLWLAPYAKEVRGIESIP------E 367
Query: 337 SFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ E + ++ N ++ W+ DV+V DPPR GLD + A+
Sbjct: 368 AVEDAKANAARNGRDNAQFYTGYAEELLPRWVKSGFAPDVIVADPPRTGLDPRFLEAV 425
>gi|295101716|emb|CBK99261.1| 23S rRNA m(5)U-1939 methyltransferase [Faecalibacterium prausnitzii
L2-6]
Length = 548
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 103/392 (26%), Positives = 168/392 (42%), Gaps = 48/392 (12%)
Query: 38 LDPPAANLPSLTCALQCPHFQSCSGCT---HEFNLHRPIIVDEATDFFKSIGLLDF---- 90
L P +P + CA+ P C GC+ ++ + D F+ IG LD
Sbjct: 63 LTPSPDRIP-VDCAVAGP----CGGCSLRHMDYAAELRSKQESVADAFRRIGGLDVPVLD 117
Query: 91 TFDSCRLYGWRCRAKLAV-RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQ 149
S + +R + + V R + +P IG Y TH +V P C+ +N L
Sbjct: 118 ALPSPEVDRYRNKVQFPVGRDKNGAPCIGFYAGRTHRIVPCPDCRLQPGVLNDIGNALCS 177
Query: 150 GIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNS 209
++PYDE+ G +R++ + T++ G++ + LV K P+S
Sbjct: 178 FFAAHGIQPYDEESGKGLVRHIFLRRGTHS-----------GQIMVCLVCT--RPKFPHS 224
Query: 210 DKLESLAEFLWRNGGSRSREHY--IHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGG 267
++L + RE + I SV N NVI G L G + + G
Sbjct: 225 EELVTAL-----------REQFSDIASVLINVNAKKTNVILGEETVSLYGPGYIEDTLCG 273
Query: 268 IDISLAPSSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSV 325
+ + L P SF Q NT A + L +Y S + DLY G G IGLS+ A +CR +
Sbjct: 274 VPVRLGPLSFYQVNTLAAERLYGIAAEYAQLEPSDVLLDLYCGMGTIGLSM--ADRCREL 331
Query: 326 KCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKG 382
VEI E+ S + +R+ +V + AD + DV+++DPPRKG
Sbjct: 332 IGVEIVPEAIDSAKANAARMGDAVAAKSRFFCADAGQAAARLAAEGLRPDVIMLDPPRKG 391
Query: 383 LDSSLVHALQSIGSAERKAKSLSESSSSMVKE 414
D + + A+ + + R+ +S +SS+ ++
Sbjct: 392 CDETTLSAVAQM--SPRRVVYVSCNSSTAARD 421
>gi|228899170|ref|ZP_04063440.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL
4222]
gi|434373537|ref|YP_006608181.1| RNA methyltransferase [Bacillus thuringiensis HD-789]
gi|228860439|gb|EEN04829.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL
4222]
gi|401872094|gb|AFQ24261.1| RNA methyltransferase [Bacillus thuringiensis HD-789]
Length = 459
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 153/357 (42%), Gaps = 45/357 (12%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF--TFDSCRLYGWRCRA 104
CP ++ C GC + N R I+V + K+ T + +R ++
Sbjct: 80 CPVYEECGGCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKS 139
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E +
Sbjct: 140 QLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQ 199
Query: 165 TGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 200 KGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--VAEV---- 238
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ---QKQIPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLNP 295
Query: 283 RAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+L + +K + D Y G G IGL L A V+ +++ E+ K
Sbjct: 296 EQTIVLYDEAKKAAALTGDEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIADARK 353
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 354 NAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|168181980|ref|ZP_02616644.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum Bf]
gi|237796828|ref|YP_002864380.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
Ba4 str. 657]
gi|182674796|gb|EDT86757.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum Bf]
gi|229263636|gb|ACQ54669.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
Ba4 str. 657]
Length = 461
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 85/356 (23%), Positives = 156/356 (43%), Gaps = 47/356 (13%)
Query: 54 CPHFQSCSGCT---HEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRL---------YGWR 101
CP ++ C GC + + D + IG LD D ++ Y +R
Sbjct: 77 CPIYKQCGGCQVQHYNYKAQLDFKKQRVIDSLERIGKLDI--DKIKIEDTIGMENPYRYR 134
Query: 102 CRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDE 161
+ ++ VR IG Y+ TH V D+ C + + ++++R + + N+ Y+E
Sbjct: 135 NKIQMPVRFEKGEIKIGFYKSRTHEVADVKECFIQDEQADKIIQIIRNWMVKHNISAYNE 194
Query: 162 DDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL--ESLAEFL 219
+ G +R++ + + ++N ++ + +V N + E+ P ++L E + EF
Sbjct: 195 ETGKGFIRHIMV-----------RKAFKNKELMLVIVTN-KEEEIPYKEELINEVIKEF- 241
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
I S+ N T NVI G + L G+ + + +++P SF Q
Sbjct: 242 ----------SNIKSIIQNVNTKKTNVILGEKCITLWGKDAITDYIDKFKFNISPLSFFQ 291
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
N ++L +K ++ V D Y G G I L L ++K + V VEI KE+ +
Sbjct: 292 VNPVQTEVLYKKALEFADLKGEEIVFDAYCGTGTISLFL--SQKAKKVYGVEIIKEAIDN 349
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEP--LSWLVGSDVLVVDPPRKGLDSSLVHAL 391
E +V+ + + P ++ + +DV+VVDPPRKG + +L+ A+
Sbjct: 350 AEDNAEE--NNVNNTEFFVGRSEEVIPDLINKGIKADVVVVDPPRKGCEKTLLEAI 403
>gi|307244221|ref|ZP_07526336.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
stomatis DSM 17678]
gi|306492371|gb|EFM64409.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
stomatis DSM 17678]
Length = 544
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 94/356 (26%), Positives = 163/356 (45%), Gaps = 52/356 (14%)
Query: 55 PHFQSCSGC-THEFNLHRPI-----IVDEATDFFKSIGLLD--FTFDSCRL---YGWRCR 103
P + +C GC E + + + IV E K IG L+ FD+ + + +R +
Sbjct: 74 PKYTNCGGCQIQELDYQKQLDLKTNIVKED---LKRIGGLENVQVFDTIGMEKPFRYRNK 130
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A+ V+ IG Y++ +H+++DI C + + ++++R+ I+E N+ YDE
Sbjct: 131 AQFPVQMEDGKLKIGFYRKKSHDIIDIDKCLIQDEKNDLIIDIIRKYIEEENISIYDEKS 190
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRN 222
G LR++ V + +G+V + LV + ++ N D+L ESL
Sbjct: 191 HKGLLRHIVTKVG-----------FTSGQVMVVLV--ATEDRFKNLDRLIESL------- 230
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ + S+ N NVI G + + G +N+G + ++P SF Q N
Sbjct: 231 ---KDQVEGFTSLVVNINKDKTNVILGLKNINKYGNGKIVDNIGDLKFEISPLSFFQVNP 287
Query: 283 RAFDILLRKLQKY--VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
D+L K +Y + G V D+Y G G I L L A+K V VEI +++
Sbjct: 288 IQTDVLYNKALEYADLKEGDRVFDIYCGIGTISLFL--AQKAEFVYGVEIVEDAIKD--- 342
Query: 341 TVSRLPKSVDG--NISWH-NADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHAL 391
+RL ++G N+ + + P + G ++V+VVDPPRKG D ++ +
Sbjct: 343 --ARLNAKLNGMDNLEFFVGKAEEVVPEIYKEGKKANVVVVDPPRKGCDERVLDTI 396
>gi|329930050|ref|ZP_08283675.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp.
HGF5]
gi|328935449|gb|EGG31921.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp.
HGF5]
Length = 532
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 90/353 (25%), Positives = 150/353 (42%), Gaps = 44/353 (12%)
Query: 54 CPHFQSCSGC-----THEFNLH-RPIIVDEATDFFKSIGLLDFTFDSC----RLYGWRCR 103
CP F C GC ++E L + IV EA F + GL D F + +R +
Sbjct: 152 CPVFGICGGCQIQHISYEGQLQAKTDIVREA--FSRYAGLDDVKFKPILGMEHPWDYRNK 209
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A+L ++ + GLY+ +H +VDI C HP++N VE ++ ++EL + Y E+
Sbjct: 210 AQLQLKRRGHEVIAGLYEADSHTIVDISGCPIQHPKVNETVEKVKSVLEELRIPLYKENG 269
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNG 223
+R ++ +++G+VQ+TL+ + K P D L +
Sbjct: 270 AKDGVR-----------TIVVRHGFQSGEVQVTLI--TAGSKLPRQDDLVRMLRLTIPE- 315
Query: 224 GSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTR 283
+ + N ++IFG+R L G E++ + SL+P +F Q N +
Sbjct: 316 --------VSGISLNINPKKTSLIFGDRTISLWGAESMQESLSDLQFSLSPRAFFQLNPQ 367
Query: 284 AFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
L ++ +V D Y G G IGL LA K V+ +E E + E
Sbjct: 368 QTVKLYESVRAAAGLTGKETVIDAYCGTGTIGLWLAPYAK--EVRGIETIPE---AVEDA 422
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ ++ N S+H W+ + DV++ DPPR GLD + +
Sbjct: 423 KANAQRNGRANASFHVGQAEELLPRWVKEGMKPDVIIADPPRTGLDPRFLETV 475
>gi|386757343|ref|YP_006230559.1| TrmA family RNA methyltransferase [Bacillus sp. JS]
gi|384930625|gb|AFI27303.1| RNA methyltransferase, TrmA family [Bacillus sp. JS]
Length = 460
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 85/355 (23%), Positives = 155/355 (43%), Gaps = 46/355 (12%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDF-------TFDSCRLYGWRCR 103
CP ++ C GC + + ++ + D + IG LD T + +R +
Sbjct: 77 CPIYKQCGGCQLQHMTYEGQLLFKQKQVKDVLERIGKLDLSNVTVHPTLGMEDPWNYRNK 136
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A++ V + G YQ+ +H+++D+ C + + AV+ ++ + V+ Y+E+
Sbjct: 137 AQVPVGEREGGLVAGFYQQRSHDIIDMSACLIQQSKNDEAVQAVKDICAKYGVKAYNEER 196
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL--ESLAEFLWR 221
G LR++ + RY ++ +V+ +R P+ K+ + A+F
Sbjct: 197 HKGWLRHIMV-------------RYGVVTGEMMIVFITRTNDFPHKAKIIEDITAQF--- 240
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ S+ N + NVIFGN + GE ++ +G + +++ SF Q N
Sbjct: 241 --------PHVKSIVQNINPNKTNVIFGNETNVIWGEEYIYDLIGDVKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L K +Y +V D Y G G I L L A++ + V VEI E+ +
Sbjct: 293 PEQTKVLYDKALEYAELQGEETVIDAYCGIGTISLFL--AKQAKKVYGVEIVPEA-IEDA 349
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
K + L + + A+ I W + +D LVVDPPRKG D +L+ +
Sbjct: 350 KRNAELNGITNAEFAVGEAETVIP--KWYEEGITADTLVVDPPRKGCDEALLRTI 402
>gi|311067148|ref|YP_003972071.1| RNA methyltransferase [Bacillus atrophaeus 1942]
gi|419823309|ref|ZP_14346863.1| putative RNA methyltransferase [Bacillus atrophaeus C89]
gi|310867665|gb|ADP31140.1| putative RNA methyltransferase [Bacillus atrophaeus 1942]
gi|388472575|gb|EIM09344.1| putative RNA methyltransferase [Bacillus atrophaeus C89]
Length = 460
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 85/355 (23%), Positives = 155/355 (43%), Gaps = 46/355 (12%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDF-------TFDSCRLYGWRCR 103
CP ++ C GC + + ++ + D + IG LD T + +R +
Sbjct: 77 CPIYKQCGGCQLQHMTYEGQLLFKQKQVKDVLERIGKLDLSNVTVHPTLGMEDPWNYRNK 136
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A++ V + G YQ+ +H+++D+ C + + AV+ ++ V+ Y+E+
Sbjct: 137 AQVPVGEREGGLVAGFYQQRSHDIIDMSACLIQQSKNDEAVQAVKDICATYGVKAYNEER 196
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL--ESLAEFLWR 221
G LR++ + RY ++ +V+ +R + P+ K+ + A+F
Sbjct: 197 HKGWLRHIMV-------------RYGVVTGEMMIVFITRTKDFPHKAKIIEDITAQF--- 240
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ S+ N + NVIFGN + GE ++ +G + +++ SF Q N
Sbjct: 241 --------PHVKSIVQNINPNKTNVIFGNETNVIWGEEYIYDLIGDVKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L K +Y +V D Y G G I L L A++ + V VEI E+ +
Sbjct: 293 PEQTKVLYDKALEYAELKGEETVIDAYCGIGTISLFL--AKQAKKVYGVEIVPEA-IEDA 349
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
K + L + + A+ I W + +D LVVDPPRKG D +L+ +
Sbjct: 350 KRNAELNGITNAEFAVGEAETVIP--KWYEEGITADTLVVDPPRKGCDEALLRTI 402
>gi|168209109|ref|ZP_02634734.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens B str. ATCC 3626]
gi|170712831|gb|EDT25013.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens B str. ATCC 3626]
Length = 455
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 94/374 (25%), Positives = 161/374 (43%), Gaps = 69/374 (18%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDFTFDSCRL-----YGWRCRAK 105
C ++ C GC + ++ + D D IG LD + L + +R + +
Sbjct: 73 CAIYKRCGGCKLQHASYKAQLDFKWDRVKDCVSKIGKLDPSIVKYPLGMENPWRYRNKVQ 132
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED--- 162
L + + IG + +H+++D+ C + V+L R+ I++ N+ PY+ D
Sbjct: 133 LPIGLINGEVKIGFFAPRSHDIIDMESCLIQDEIGDKVVKLTREWIEKFNIRPYNVDGEY 192
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
D G +R++ + + +V + LV N EK P+ E + + +N
Sbjct: 193 DEKGIVRHIMI-----------RRGFTTNEVMVVLVTNG--EKLPHK---EEFVDLMVKN 236
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
I SV N + NVI G + L GE + +G +++P SF Q N
Sbjct: 237 IPG------IKSVIQNINSKKTNVILGLESKTLWGEDTISDYIGDFRFNISPLSFFQVNP 290
Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
++L K +Y + V D Y G G I L L ++K + V VEI
Sbjct: 291 TQTEVLYGKALEYANLTGNEEVFDAYCGTGTITLFL--SQKAKKVYGVEI---------- 338
Query: 341 TVSRLPKSVDGNISWHNA-DNSIEPLSWLVG---------------SDVLVVDPPRKGLD 384
+P+++D +W NA +N +E + + VG +DV+VVDPPRKG D
Sbjct: 339 ----IPQAIDN--AWINAKENKVENVEFFVGESEVVIPDLINKGVKADVVVVDPPRKGCD 392
Query: 385 SSLVHALQSIGSAE 398
L+ A+ +I + +
Sbjct: 393 KKLLDAITNIDAKK 406
>gi|398309733|ref|ZP_10513207.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus mojavensis
RO-H-1]
Length = 459
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 85/355 (23%), Positives = 154/355 (43%), Gaps = 46/355 (12%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDF-------TFDSCRLYGWRCR 103
CP ++ C GC + + ++ + D + IG LD T + +R +
Sbjct: 77 CPIYKQCGGCQLQHMTYEGQLLFKQKQVKDVLERIGKLDLSNVTVHPTLGMQDPWNYRNK 136
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A++ V + G YQ+ +H+++D+ C + + AV+ ++ V+ Y+E+
Sbjct: 137 AQVPVGEREGGLVAGFYQQRSHDIIDMSACLIQQSKNDEAVQAVKDICATYGVKAYNEEG 196
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL--ESLAEFLWR 221
G LR++ + RY ++ +V+ +R P+ K+ + A+F
Sbjct: 197 HKGWLRHIMV-------------RYGVVTGEMMIVFITRTNDFPHKAKIIEDITAQF--- 240
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ S+ N + NVIFGN + GE ++ +G + +++ SF Q N
Sbjct: 241 --------PHVKSIVQNINPNKTNVIFGNETNVIWGEEYIYDLIGDVKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L K +Y +V D Y G G I L L A++ + V VEI E+ +
Sbjct: 293 PEQTKVLYDKALEYAELKGEETVIDAYCGIGTISLFL--AKQAKKVYGVEIVPEA-IEDA 349
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
K + L + + A+ I W + +D LVVDPPRKG D +L+ +
Sbjct: 350 KRNAELNGITNAEFAVGEAETVIP--KWYEEGITADTLVVDPPRKGCDEALLRTI 402
>gi|398307219|ref|ZP_10510805.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus vallismortis
DV1-F-3]
Length = 467
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 89/376 (23%), Positives = 159/376 (42%), Gaps = 81/376 (21%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVD----------EATDFFKSIGLLDFTFDSCR 96
CP ++ C GC + + R I++ E+ D ++IG+ +
Sbjct: 82 CPVYEQCGGCQLQHLAYSQQLREKRDIVIQSLERHTKFKVESMDIKETIGMDN------- 134
Query: 97 LYGWRCRAKLAV-RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELN 155
+ +R +++ + R S S + GLY +H++V I C HP N ++R+ +++ N
Sbjct: 135 PWNYRNKSQFQIGRSQSGSIIAGLYGLDSHDIVPIKDCIVQHPATNKTTGIVRRILEDFN 194
Query: 156 VEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESL 215
V Y+E R GD+R + V + G+VQ+ LV + E P+ +++
Sbjct: 195 VSVYNERKRKGDVRTIVTRVG-----------FETGEVQVVLV--TAKETLPHKEEIVKA 241
Query: 216 AEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPS 275
+ R + S+ N + +VIFG + + L G T E +G + L+
Sbjct: 242 IQ---------KRLPEVKSIIQNVNGAKTSVIFGEKTKPLAGHTVIQEVLGDVSFELSAR 292
Query: 276 SFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
+F Q N L +++K V D Y G G IG+ LA K V+ +++ KE
Sbjct: 293 AFFQLNPEQTVKLYDEVKKAAQLTGKEKVVDAYCGVGTIGMWLADGAK--EVRGMDVIKE 350
Query: 334 SQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDP 378
S +K N H N+ +++ G+ DV++VDP
Sbjct: 351 SIDDAKK-----------NAKKHGMANA----TYVTGTAEHWLPKWTKEGFRPDVVIVDP 395
Query: 379 PRKGLDSSLVHALQSI 394
PR G DS+ + ++ +
Sbjct: 396 PRTGCDSTFLDTIKKV 411
>gi|365839063|ref|ZP_09380312.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaeroglobus geminatus
F0357]
gi|364565631|gb|EHM43348.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaeroglobus geminatus
F0357]
Length = 497
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 97/397 (24%), Positives = 166/397 (41%), Gaps = 48/397 (12%)
Query: 11 PSPVITCRVSLGAVRNPPPPAPPSSLPLDPPAANLPSLTCALQCPHFQSCSGCTHEFNLH 70
P +T R++ V+ P + P PS CP + C GC + +
Sbjct: 44 PGETVTARITY--VKKQYAVGRPERIQKASPHRVKPS------CPVYADCGGCQLQHLSY 95
Query: 71 RPIIVD---EATDFFKSIGLLDF-----TFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQE 122
+V+ + D + IG L T S R + +R + +L V G + IG + E
Sbjct: 96 EGQLVEKQRQVKDAVEHIGKLKDIPVLPTLGSDRPWNYRNKMQLPVGGEKKTVHIGCFAE 155
Query: 123 GTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSL 182
+H ++DI C N + ++RQ +K+ + YDED RTG +R++ M T ++
Sbjct: 156 KSHRIIDIDACPIQKDGNNQIIPVVRQWMKDYKIPAYDEDRRTGIVRHI-MGRTGVHS-- 212
Query: 183 PASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTS 242
G++ + +V P ++ L L R + SV N T
Sbjct: 213 --------GEIMVCIV-----TAVPVVPHMKDLVHML------RKEVPGLTSVMQNINTR 253
Query: 243 TNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGA-- 300
NVI GN+ + + G +++G ++ ++ SF Q N+ L Y
Sbjct: 254 HTNVILGNKTKVIYGSLTISDSIGDLNFRISAQSFFQVNSEQAQKLYETALSYANLTGKE 313
Query: 301 SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADN 360
+V D+Y G G I L L A++ R V +EI + + V + N + D
Sbjct: 314 TVVDVYCGTGTITLFL--AKQARYVYGIEI---VEPAVRDAVKNAKDNGIRNAHFTCGDA 368
Query: 361 SI---EPLSWLVGSDVLVVDPPRKGLDSSLVHALQSI 394
+ E L + DV+V+DPPR G + +++A+ S+
Sbjct: 369 AYKLPELLQSGIKPDVIVIDPPRAGCEEKVLNAIASV 405
>gi|321314402|ref|YP_004206689.1| putative RNA methyltransferase [Bacillus subtilis BSn5]
gi|320020676|gb|ADV95662.1| putative RNA methyltransferase [Bacillus subtilis BSn5]
Length = 461
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 85/355 (23%), Positives = 154/355 (43%), Gaps = 46/355 (12%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDF-------TFDSCRLYGWRCR 103
CP ++ C GC + + ++ + D + IG LD T + +R +
Sbjct: 77 CPIYKQCGGCQLQHMTYEGQLLFKQKQVKDVLERIGKLDLSNVTVHPTLGMEDPWNYRNK 136
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A++ V + G YQ+ +H+++D+ C + + AV+ ++ V+ Y+E+
Sbjct: 137 AQVPVGEREGGLVAGFYQQRSHDIIDMSACLIQQSKNDEAVQAVKDICANYGVKAYNEER 196
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL--ESLAEFLWR 221
G LR++ + RY ++ +V+ +R P+ K+ + A+F
Sbjct: 197 HKGWLRHIMV-------------RYGVVTGEMMIVFITRTSDFPHKAKVIEDITAQF--- 240
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ S+ N + NVIFGN + GE ++ +G + +++ SF Q N
Sbjct: 241 --------PHVKSIVQNINPNKTNVIFGNETNVIWGEEYIYDLIGDVKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L K +Y +V D Y G G I L L A++ + V VEI E+ +
Sbjct: 293 PEQTKVLYDKALEYAELQGEETVIDAYCGIGTISLFL--AKQAKKVYGVEIVPEA-IEDA 349
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
K + L + + A+ I W + +D LVVDPPRKG D +L+ +
Sbjct: 350 KRNAELNGITNAEFAVGEAETVIP--KWYEEGIAADTLVVDPPRKGCDEALLRTI 402
>gi|229095127|ref|ZP_04226122.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-29]
gi|229101229|ref|ZP_04231993.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-28]
gi|229114081|ref|ZP_04243506.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-3]
gi|423381544|ref|ZP_17358827.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG1O-2]
gi|423444608|ref|ZP_17421513.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG4X2-1]
gi|423450435|ref|ZP_17427313.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG5O-1]
gi|423467659|ref|ZP_17444427.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG6O-1]
gi|423537061|ref|ZP_17513479.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuB2-9]
gi|423542786|ref|ZP_17519175.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuB4-10]
gi|423543904|ref|ZP_17520262.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuB5-5]
gi|423626369|ref|ZP_17602146.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD148]
gi|228669351|gb|EEL24768.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-3]
gi|228682197|gb|EEL36310.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-28]
gi|228688312|gb|EEL42195.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-29]
gi|401124820|gb|EJQ32581.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG5O-1]
gi|401167844|gb|EJQ75118.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuB4-10]
gi|401185608|gb|EJQ92700.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuB5-5]
gi|401252548|gb|EJR58806.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD148]
gi|401629453|gb|EJS47270.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG1O-2]
gi|402410530|gb|EJV42931.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG4X2-1]
gi|402413274|gb|EJV45620.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG6O-1]
gi|402460245|gb|EJV91968.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuB2-9]
Length = 459
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 87/357 (24%), Positives = 154/357 (43%), Gaps = 45/357 (12%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSI--GLLDFTFDSCRLYGWRCRA 104
CP ++ C GC + N R I+V + + + T + +R ++
Sbjct: 80 CPVYEECGGCQLQHLDYKEQLNQKRDIVVQAFEKYMNNTLEEKIRPTLGMENPWHYRNKS 139
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E +
Sbjct: 140 QLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQ 199
Query: 165 TGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 200 KGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--IAEV---- 238
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ---QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLNP 295
Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+L + +K + + D Y G G IGL L A V+ +++ E+ K
Sbjct: 296 EQTVVLYDEAKKAAALTGNEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIADARK 353
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 354 NAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|422862228|ref|ZP_16908860.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK408]
gi|327474823|gb|EGF20228.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK408]
Length = 469
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 84/323 (26%), Positives = 151/323 (46%), Gaps = 34/323 (10%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + G +++ +H+++ I P I+ + R ++ +++P
Sbjct: 138 GYRNKAQVPVRRVNGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKP 197
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R +L + G++ + LV P ++E L E
Sbjct: 198 YDEQEKTGLIR-----------NLVVRRGHYLGEIMVILVTTR-----PKIFRVERLMEH 241
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
L + I S+ N N IFG WR L G+ + + G D +A +F
Sbjct: 242 LTEAFPA------IKSIMQNINDQPGNAIFGKDWRTLYGQDYITDQMLGNDFQIAAPAFY 295
Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q NT + L + + A V D Y+G G IGLS+ A++ + V VE+ E+
Sbjct: 296 QVNTEMAEKLYQTAIDFSELTADDVVLDAYSGIGTIGLSV--AKQVKQVYGVEVIPEAVE 353
Query: 337 SFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQS 393
+ K + + + + A+ +I+ +WL + +DV++VDPPRKGL S + A S
Sbjct: 354 NSRKN-AEINDITNASYVCAPAEEAIQ--NWLKEGIQADVILVDPPRKGLTESFIKA--S 408
Query: 394 IGSAERKAKSLSESSSSMVKEEK 416
I +K +S + ++M ++ K
Sbjct: 409 ISMEPKKITYISCNVATMARDIK 431
>gi|407708387|ref|YP_006831972.1| formate dehydrogenase [Bacillus thuringiensis MC28]
gi|407386072|gb|AFU16573.1| putative RNA methyltransferase [Bacillus thuringiensis MC28]
Length = 459
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 87/357 (24%), Positives = 154/357 (43%), Gaps = 45/357 (12%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSI--GLLDFTFDSCRLYGWRCRA 104
CP ++ C GC + N R I+V + + + T + +R ++
Sbjct: 80 CPVYEECGGCQLQHLDYKEQLNQKRDIVVQAFEKYMNNTLEEKIRPTLGMENPWHYRNKS 139
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E +
Sbjct: 140 QLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQ 199
Query: 165 TGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 200 KGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--IAEV---- 238
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ---QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLNP 295
Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+L + +K + + D Y G G IGL L A V+ +++ E+ K
Sbjct: 296 EQTVVLYDEAKKAAALTGNEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIADARK 353
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 354 NAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|423619961|ref|ZP_17595792.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD115]
gi|401250454|gb|EJR56754.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD115]
Length = 459
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 87/357 (24%), Positives = 154/357 (43%), Gaps = 45/357 (12%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSI--GLLDFTFDSCRLYGWRCRA 104
CP ++ C GC + N R I+V + + + T + +R ++
Sbjct: 80 CPVYEECGGCQLQHLDYKEQLNQKRDIVVQAFEKYMNNTLEEKIRPTLGMENPWHYRNKS 139
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E +
Sbjct: 140 QLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQ 199
Query: 165 TGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 200 KGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--IAEV---- 238
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ---QKQMPSVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLNP 295
Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+L + +K + + D Y G G IGL L A V+ +++ E+ K
Sbjct: 296 EQTVVLYDEAKKAAALTGNEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIADARK 353
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 354 NAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|315303628|ref|ZP_07874164.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria ivanovii FSL
F6-596]
gi|313628001|gb|EFR96598.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria ivanovii FSL
F6-596]
Length = 453
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 90/353 (25%), Positives = 158/353 (44%), Gaps = 40/353 (11%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKL 106
C + C GC+ + + ++ + K IG LD T + +R ++++
Sbjct: 76 CAVYSKCGGCSLQHLSYEGQLKFKRNQVEETMKRIGNLDVQVKETLGMENPWRYRNKSQV 135
Query: 107 AVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTG 166
V + G YQ+ +H ++D+ C H+ + + AV+ R+ + + EPY+E G
Sbjct: 136 PVGFVNGKLTAGFYQKRSHEIIDMTTCLIHNEQGDYAVQKAREILAKYGTEPYNEKTGKG 195
Query: 167 DLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSP-NSDKLESLAEFLWRNGGS 225
D+R++ V + G++ + LV N +K P D + L E L
Sbjct: 196 DIRHIMTRVA-----------HTTGQLMLVLVTNK--DKIPFKEDIIRDLTEQLA----- 237
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
+ S+ N NVIFGNR + L G+ +++ GI +++ SF Q N
Sbjct: 238 ------LTSIVQNINPQKTNVIFGNRTKTLWGKDIIEDSIHGIRFAISARSFYQVNPLQT 291
Query: 286 DILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
++L ++ + +V D Y G G I L L A+K + V VEI ++ + + +
Sbjct: 292 EVLYQQALEAAELTGEETVIDAYCGIGSISLCL--AKKAKHVYGVEIVDQA-IQDARANA 348
Query: 344 RLPKSVDGNISWHNADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHALQSI 394
L + + A+ I P + G +DVLVVDPPRKG D L+ + ++
Sbjct: 349 ALNELNNTTFETGKAEEVI-PAWYKAGIIADVLVVDPPRKGCDEKLLQTILAM 400
>gi|423613863|ref|ZP_17589722.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD107]
gi|401240463|gb|EJR46864.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD107]
Length = 459
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 89/357 (24%), Positives = 154/357 (43%), Gaps = 45/357 (12%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF--TFDSCRLYGWRCRA 104
C ++ C GC + N R I+V + K+ T + +R ++
Sbjct: 80 CSVYEECGGCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKS 139
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E +
Sbjct: 140 QLQVGRKDEKVITGLYKQNSHQLIDISHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQ 199
Query: 165 TGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
G +R + + AV T G+VQ+TLV + E+ PN ++ +AE
Sbjct: 200 KGLVRTIVTRTAVQT-------------GEVQVTLV--TTKEELPNKEQF--IAEV---- 238
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ---QKQMPTVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLNP 295
Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+L + +K S + D Y G G IGL L A V+ +++ E+ +K
Sbjct: 296 EQTVVLYDEAKKAAALTGSEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIEDAKK 353
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 354 NAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|317127543|ref|YP_004093825.1| TrmA family RNA methyltransferase [Bacillus cellulosilyticus DSM
2522]
gi|315472491|gb|ADU29094.1| RNA methyltransferase, TrmA family [Bacillus cellulosilyticus DSM
2522]
Length = 469
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 91/357 (25%), Positives = 158/357 (44%), Gaps = 50/357 (14%)
Query: 54 CPHFQSCSGC-----THEFNLH-RPIIVDEATDFFKSIGL--LDF--TFDSCRLYGWRCR 103
CP ++ C GC ++E L + IV +A + + I L +DF T + +R +
Sbjct: 87 CPIYKECGGCQLQHLSYEGQLKGKKDIVRQAFERYTKINLDKVDFHDTIGMEEPWKYRNK 146
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
+++ V + GLY +H ++D+ C HP+ N +++Q ++N+ PY+E
Sbjct: 147 SQMQVGHHQGKVIAGLYSPNSHKLIDLEDCIVQHPQTNKVTNVVKQLAADMNIAPYNERK 206
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNG 223
RTG LR + V + G+ Q+ LV + + K++ E +
Sbjct: 207 RTGVLRTIVTRVG-----------FETGEYQVVLVTAKK-----DIPKVDLFIEAI---- 246
Query: 224 GSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTR 283
+ R + S+ N +++FG+ L G+ E + +L+P +F Q N
Sbjct: 247 --KQRLPDVTSIVQNINPKKTSLVFGDETIVLYGKEKIEETMSEFRFNLSPRAFFQLNP- 303
Query: 284 AFDILLRKLQKYVPYGASVT------DLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
I +KL A +T D Y G G IGL LAA K ++ +++ KES +
Sbjct: 304 ---IQTKKLYDAAKEAAQLTGKEKVVDAYCGVGTIGLWLAAGAK--EIRGMDVIKES-IE 357
Query: 338 FEKTVSRLPKSVDGNISWHNADNSI---EPLSWLVGSDVLVVDPPRKGLDSSLVHAL 391
K ++ + + A++ + E W DV+VVDPPR GLD + + L
Sbjct: 358 DAKNNAKAHGIKNAHYVSGKAEHLLPEWEKEGW--HPDVVVVDPPRTGLDETFIQTL 412
>gi|421834743|ref|ZP_16269700.1| 23S rRNA (uracil-5-)-methyltransferase RumA, partial [Clostridium
botulinum CFSAN001627]
gi|409743777|gb|EKN42612.1| 23S rRNA (uracil-5-)-methyltransferase RumA, partial [Clostridium
botulinum CFSAN001627]
Length = 423
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 91/375 (24%), Positives = 158/375 (42%), Gaps = 85/375 (22%)
Query: 54 CPHFQSCSGCT---------HEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRL------- 97
CP ++ C GC EF R I D + IG LD D ++
Sbjct: 77 CPIYKQCGGCQVQHYSYKAQLEFKKQRVI------DSLERIGKLDI--DKIKIEDTIGME 128
Query: 98 --YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELN 155
Y +R + ++ VR IG Y+ TH V D+ C + + ++++R + + N
Sbjct: 129 NPYRYRNKIQMPVRFEKGEIKIGFYKSRTHEVADVKECFIQDEQADKIIQIIRNWMVKHN 188
Query: 156 VEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL--E 213
+ Y+E+ G +R++ + + ++N ++ + +V N + E+ P ++L E
Sbjct: 189 ISAYNEETGKGFIRHIMV-----------RKAFKNKELMLVIVTN-KEEEIPYKEELINE 236
Query: 214 SLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLA 273
+ EF I S+ N T NVI G + L G+ + + +++
Sbjct: 237 VIKEF-----------SNIKSIIQNINTKKTNVILGEKCITLWGKDTITDYIDKFKFNIS 285
Query: 274 PSSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEIN 331
P SF Q N ++L +K ++ V D Y G G I L L ++K + V VEI
Sbjct: 286 PLSFFQVNPIQTEVLYKKALEFANLKGEEIVFDAYCGTGTISLFL--SQKAKKVYGVEII 343
Query: 332 KESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVG---------------SDVLVV 376
KE ++D N + +N I+ + VG ++V+VV
Sbjct: 344 KE--------------AID-NAKDNAKENKIDNAEFFVGKSEEVIPDLIDKGIKAEVVVV 388
Query: 377 DPPRKGLDSSLVHAL 391
DPPRKG + +L+ A+
Sbjct: 389 DPPRKGCEKTLLEAI 403
>gi|258646651|ref|ZP_05734120.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dialister invisus DSM
15470]
gi|260404073|gb|EEW97620.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dialister invisus DSM
15470]
Length = 468
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 90/353 (25%), Positives = 146/353 (41%), Gaps = 45/353 (12%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIG-----LLDFTFDSCRLYGWRC 102
+CP +++C GC T+E L + D + I L+ + + +R
Sbjct: 87 ECPVYENCGGCQLSHLTYEGQLD--MKYRRVKDVIERIAGESGKLVRPVLPAVHPFAYRN 144
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+ + +G Y++G+H+++ + C N ++ R+ I++ + YDE
Sbjct: 145 KMAVPAGLVKGEAALGCYRQGSHDIIPVSSCAIQKEENNRLLQFARRFIEKYGISVYDEK 204
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
R G LR+V V +GKV + LV S E P + W
Sbjct: 205 TRKGSLRHVMGRVGD------------DGKVMVVLVTAS--ETLPEEKR--------WIE 242
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
G + I S+W N Q N I G + RHL G ++ G+ ++P SF Q +
Sbjct: 243 GIQKELPEVI-SLWHNIQPKPGNTILGAKIRHLWGRETLTASLCGLQFEVSPYSFFQVHK 301
Query: 283 RAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+IL K +Y G +V D Y G G I L L A+K + V +EI K + E
Sbjct: 302 EQAEILYEKALEYADLKGGETVIDAYCGTGTISLCL--AKKAKRVIGIEIVKP---AIED 356
Query: 341 TVSRLPKSVDGNISWHNAD-NSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHA 390
K+ N ++ AD + P + G DV+V+DP R G ++ A
Sbjct: 357 AKKNAKKNHMENTEFYAADAGKLMPQLYRQGLVPDVIVMDPVRAGCSEEVLKA 409
>gi|414084845|ref|YP_006993556.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Carnobacterium
maltaromaticum LMA28]
gi|412998432|emb|CCO12241.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Carnobacterium
maltaromaticum LMA28]
Length = 434
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 148/323 (45%), Gaps = 57/323 (17%)
Query: 82 FKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRIN 141
F++IG+ +G+R +A++ VR + G +++ +H+++ + P+I+
Sbjct: 96 FETIGM-------AEPWGYRNKAQIPVRKQNDKLTTGFFRKNSHDLIAMEDFVIQDPKID 148
Query: 142 AAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNS 201
AV ++R ++E NV+PY+E + TG+LR++ + Y G++ I LV +
Sbjct: 149 QAVVIVRDIMREFNVKPYNEAENTGNLRHIVV-----------RRGYHTGEIMIVLVTRT 197
Query: 202 RNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDF 261
N+ P S L ++ E L + S+ N S N I G L G+ F
Sbjct: 198 -NKLFPTSKILPAITEALPE----------VVSIIQNVNPSRTNKILGPENIVLWGQDYF 246
Query: 262 WENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAA- 318
+ + G ++ S+F Q N + L + + +Y +V D Y G G I LSLA
Sbjct: 247 TDTLLGNTFQISASAFYQVNPTQTEKLYQTVLEYAELTGKETVIDAYCGIGTISLSLAKE 306
Query: 319 ARKCRSVKCVE-----------INKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW 367
A++ ++ VE +N ++FE ++ + + W + ++
Sbjct: 307 AKEVYGIEVVEAAVENAKNNAKLNGIENVTFEAGLAE-----EVMVEWAEKELAV----- 356
Query: 368 LVGSDVLVVDPPRKGLDSSLVHA 390
D+LVVDPPRKGL+ S + A
Sbjct: 357 ----DLLVVDPPRKGLEGSFIEA 375
>gi|423409525|ref|ZP_17386674.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG2X1-3]
gi|401655145|gb|EJS72680.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG2X1-3]
Length = 459
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 87/357 (24%), Positives = 155/357 (43%), Gaps = 45/357 (12%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSI--GLLDFTFDSCRLYGWRCRA 104
CP ++ C GC + N R I+V + + + T + +R ++
Sbjct: 80 CPVYEECGGCQLQHLDYKEQLNQKRDIVVQAFEKYMNNTLEEKIRPTLGMENPWHYRNKS 139
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E +
Sbjct: 140 QLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQ 199
Query: 165 TGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 200 KGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--IAEV---- 238
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ---QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLNP 295
Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+L + +K + + D Y G G IGL L A V+ +++ E+ +K
Sbjct: 296 EQTVVLYDEAKKAAALTGNEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIEDAKK 353
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 354 NAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|312128413|ref|YP_003993287.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor
hydrothermalis 108]
gi|311778432|gb|ADQ07918.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor
hydrothermalis 108]
Length = 451
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 86/369 (23%), Positives = 154/369 (41%), Gaps = 76/369 (20%)
Query: 53 QCPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDFTFDSC----RLYGWR 101
+CP++ C GC H+ +L + ++ D F+ IG L + + + +R
Sbjct: 71 ECPYYHLCGGCHLMHAKYQHQLSLKKLLV----EDAFRRIGKLSPKINDVIGMEKPFRYR 126
Query: 102 CRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDE 161
+ L V G P IG Y++ TH++VDI +C H + ++ +++ IK+ +E YDE
Sbjct: 127 NKTALPVGGDYKKPQIGFYKKMTHDIVDIDYCLIQHEFCDDVIKGMKEMIKKHKIEVYDE 186
Query: 162 DDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNS--RNEKSPNSDKLESLAEFL 219
G LR++ S E + + LV N ++ D L+ +
Sbjct: 187 RKHQGVLRHI-----VVRNSFAFDE------MMLILVCAKVPENLEAIKKDILDKFPK-- 233
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
I S++ N NVI G+ + G + + +G + ++P SF Q
Sbjct: 234 ------------IKSLYLNLNPKRTNVILGDEDILIWGSSTIKDKIGNLTFEISPKSFFQ 281
Query: 280 ANTRAFDILLRKLQKYV--PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
N+ ++L ++ KY+ V D+Y+G G I + +A C+ V +EI
Sbjct: 282 VNSVQTEVLYSQVVKYLRNIEAEVVFDIYSGIGTISMFIAPF--CKKVYAIEI------- 332
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPPRKG 382
E V KS + +NSI + ++ G +++DPPR G
Sbjct: 333 VEDAVEDAKKS--------SKNNSISNIEFICGCAEIEIPKLLKSGIIPQAVILDPPRSG 384
Query: 383 LDSSLVHAL 391
+ L+ +L
Sbjct: 385 CEKELLESL 393
>gi|315282728|ref|ZP_07871069.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria marthii FSL
S4-120]
gi|313613628|gb|EFR87431.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria marthii FSL
S4-120]
Length = 453
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 87/353 (24%), Positives = 157/353 (44%), Gaps = 40/353 (11%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDFTFDSC----RLYGWRCRAKL 106
C + C GC+ + + ++ + K IG L+ + + +R ++++
Sbjct: 76 CEVYSKCGGCSLQHLSYEGQLEFKRNQVEETMKRIGKLNVEVPAALGMENPWRYRNKSQV 135
Query: 107 AVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTG 166
V + G YQ+ +H ++D+ C H+ + + AV+ R+ + + EPYDE G
Sbjct: 136 PVGFVNGKLTAGFYQKRSHEIIDMSTCLIHNEKGDFAVQKAREILAKYGTEPYDEKTGKG 195
Query: 167 DLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRNGGS 225
D+R++ R+ + Q+ LV+ + E+ P D++ L E L
Sbjct: 196 DIRHIMT-------------RFAHTTGQLMLVFVTTKERLPFKDEIVRDLTEQLE----- 237
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
+ S+ N NVIFG+R + L G+ + + GI +++ SF Q N
Sbjct: 238 ------LTSIVQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPLQT 291
Query: 286 DILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
++L ++ +V D Y G G I L L A+K + V VEI ++ + + +
Sbjct: 292 EVLYQQAIDAAELTGEETVIDAYCGIGSISLCL--AKKAKHVYGVEIVDQA-IQDARANA 348
Query: 344 RLPKSVDGNISWHNADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHALQSI 394
L + + A+ I P + G +DVLVVDPPRKG D L+ + ++
Sbjct: 349 ELNELTNTTFETGKAEEVI-PAWYKAGIVADVLVVDPPRKGCDEKLLETILAM 400
>gi|170760987|ref|YP_001788698.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A3 str. Loch Maree]
gi|169407976|gb|ACA56387.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A3 str. Loch Maree]
Length = 461
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 88/367 (23%), Positives = 155/367 (42%), Gaps = 65/367 (17%)
Query: 54 CPHFQSCSGCT---HEFNLHRPIIVDEATDFFKSIGLLDF-------TFDSCRLYGWRCR 103
CP ++ C GC + + D + IG LD T Y +R +
Sbjct: 77 CPIYKQCGGCQVQHYSYKAQLDFKKRRVIDSLERIGKLDIDKIEIKDTIGMENPYRYRNK 136
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
++ VR IG Y+ TH V D+ C + + ++++R + + N+ Y+E+
Sbjct: 137 IQMPVRFEKGEIKIGFYKPRTHEVADVKECFIQDEQADEIIQIIRNWMAKHNISAYNEET 196
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNG 223
G +R++ + + ++N ++ + +V N NE P ++L ++E +
Sbjct: 197 GKGFIRHIMV-----------RKAFKNEELMLVIVTNKENE-IPYKEEL--ISEVI---- 238
Query: 224 GSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTR 283
+ I S+ N T NVI G + L G+ + + +++P SF Q N
Sbjct: 239 ---KKLDNIKSIVQNVNTKKTNVILGEKCITLWGKDTITDYIDKFKFNISPLSFFQVNPI 295
Query: 284 AFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
++L +K ++ V D Y G G I L L ++K + V VEI KE
Sbjct: 296 QTEVLYKKALEFANLKGEEIVFDAYCGTGTISLFL--SQKAKKVYGVEIIKE-------- 345
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWLVG---------------SDVLVVDPPRKGLDSS 386
++D N + +N I+ + VG +DV+VVDPPRKG + S
Sbjct: 346 ------AID-NAKDNAKENKIDNAEFFVGKSEEVIPDLINKGIKADVVVVDPPRKGCEKS 398
Query: 387 LVHALQS 393
L+ A+ +
Sbjct: 399 LLEAIAA 405
>gi|384264260|ref|YP_005419967.1| TrmA family RNA methyltransferase [Bacillus amyloliquefaciens
subsp. plantarum YAU B9601-Y2]
gi|387897187|ref|YP_006327483.1| putative RNA methyltransferase [Bacillus amyloliquefaciens Y2]
gi|380497613|emb|CCG48651.1| RNA methyltransferase, TrmA family [Bacillus amyloliquefaciens
subsp. plantarum YAU B9601-Y2]
gi|387171297|gb|AFJ60758.1| putative RNA methyltransferase [Bacillus amyloliquefaciens Y2]
Length = 459
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 85/355 (23%), Positives = 154/355 (43%), Gaps = 46/355 (12%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDF-------TFDSCRLYGWRCR 103
CP ++ C GC + + ++ + D + IG LD T + +R +
Sbjct: 77 CPIYKQCGGCQLQHMTYEGQLLFKQKQVKDVLERIGKLDLSKVTVHPTLGMEDPWNYRNK 136
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A++ V + G YQ+ +H+++D+ C + + AV+ ++ V+ Y+E+
Sbjct: 137 AQVPVGEREGGLVAGFYQQRSHDIIDMSACLIQQSKNDEAVQAVKDICANYGVKAYNEER 196
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL--ESLAEFLWR 221
G LR++ + RY ++ +V+ +R P+ K+ + A+F
Sbjct: 197 HKGWLRHIMV-------------RYGVVTGEMMIVFITRTSDFPHKAKIIEDITAQF--- 240
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ S+ N + NVIFGN + GE ++ +G + +++ SF Q N
Sbjct: 241 --------PHVKSIVQNINPNKTNVIFGNETNVIWGEEYIYDLIGDVKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L K +Y +V D Y G G I L L A++ + V VEI E+ +
Sbjct: 293 PEQTKVLYDKALEYAELQGEETVIDAYCGIGTISLFL--AKQAKKVYGVEIVPEA-IEDA 349
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
K + L + + A+ I W + +D LVVDPPRKG D +L+ +
Sbjct: 350 KRNAELNGITNAEFAVGEAETVIP--KWYEEGITADTLVVDPPRKGCDEALLRTI 402
>gi|18309349|ref|NP_561283.1| RNA methyltransferase [Clostridium perfringens str. 13]
gi|50401631|sp|Q8XNG6.1|Y367_CLOPE RecName: Full=Uncharacterized RNA methyltransferase CPE0367
gi|18144025|dbj|BAB80073.1| RNA methyltransferase [Clostridium perfringens str. 13]
Length = 455
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 94/374 (25%), Positives = 161/374 (43%), Gaps = 69/374 (18%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDFTFDSCRL-----YGWRCRAK 105
C ++ C GC + ++ + D D IG LD + L + +R + +
Sbjct: 73 CAIYKRCGGCKLQHASYKAQLDFKWDRVKDCVSKIGKLDPSIVKYPLGMENPWRYRNKVQ 132
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED--- 162
L + + IG + +H+++D+ C + V+L R+ I++ N+ PY+ D
Sbjct: 133 LPIGLINGEVKIGFFAPRSHDIIDMESCLIQDEIGDKVVKLTREWIEKFNIRPYNVDGEY 192
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
D G +R++ + + +V + LV N EK P+ E + + +N
Sbjct: 193 DEKGIVRHIMI-----------RRGFTTNEVMVVLVTNG--EKLPHK---EEFVDLMVKN 236
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
I SV N + NVI G + L GE + +G +++P SF Q N
Sbjct: 237 IPG------IKSVIQNINSKKTNVILGLESKTLWGEDTISDYIGDFRFNISPLSFFQVNP 290
Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
++L K +Y + V D Y G G I L L ++K + V VEI
Sbjct: 291 IQTEVLYGKALEYANLTGNEEVFDAYCGTGTITLFL--SQKAKKVYGVEI---------- 338
Query: 341 TVSRLPKSVDGNISWHNA-DNSIEPLSWLVG---------------SDVLVVDPPRKGLD 384
+P+++D +W NA +N +E + + VG +DV+VVDPPRKG D
Sbjct: 339 ----IPQAIDN--AWINAKENKVENVEFFVGESEVVIPDLINKGVKADVVVVDPPRKGCD 392
Query: 385 SSLVHALQSIGSAE 398
L+ A+ +I + +
Sbjct: 393 KKLLDAITNIDAKK 406
>gi|16077869|ref|NP_388683.1| RNA methyltransferase [Bacillus subtilis subsp. subtilis str. 168]
gi|221308637|ref|ZP_03590484.1| hypothetical protein Bsubs1_04463 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221312961|ref|ZP_03594766.1| hypothetical protein BsubsN3_04414 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221317887|ref|ZP_03599181.1| hypothetical protein BsubsJ_04358 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221322160|ref|ZP_03603454.1| hypothetical protein BsubsS_04454 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|321314530|ref|YP_004206817.1| putative RNA methyltransferase [Bacillus subtilis BSn5]
gi|402775025|ref|YP_006628969.1| RNA methyltransferase [Bacillus subtilis QB928]
gi|418034102|ref|ZP_12672578.1| hypothetical protein BSSC8_35220 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|428278286|ref|YP_005560021.1| hypothetical protein BSNT_01338 [Bacillus subtilis subsp. natto
BEST195]
gi|452912323|ref|ZP_21960951.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus subtilis
MB73/2]
gi|50401310|sp|O31545.1|YFJO_BACSU RecName: Full=Uncharacterized RNA methyltransferase YfjO
gi|2633126|emb|CAB12631.1| putative RNA methyltransferase [Bacillus subtilis subsp. subtilis
str. 168]
gi|2780399|dbj|BAA24300.1| YfjO [Bacillus subtilis]
gi|291483243|dbj|BAI84318.1| hypothetical protein BSNT_01338 [Bacillus subtilis subsp. natto
BEST195]
gi|320020804|gb|ADV95790.1| putative RNA methyltransferase [Bacillus subtilis BSn5]
gi|351469046|gb|EHA29242.1| hypothetical protein BSSC8_35220 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|402480210|gb|AFQ56719.1| Putative RNA methyltransferase [Bacillus subtilis QB928]
gi|407956482|dbj|BAM49722.1| RNA methyltransferase [Bacillus subtilis BEST7613]
gi|407963753|dbj|BAM56992.1| RNA methyltransferase [Bacillus subtilis BEST7003]
gi|452117351|gb|EME07745.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus subtilis
MB73/2]
Length = 466
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 87/369 (23%), Positives = 156/369 (42%), Gaps = 67/369 (18%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIV---DEATDFFKSIGLLDFTFDSCRLYGWRCR 103
CP ++ C GC + + R I++ + T F + T + +R +
Sbjct: 82 CPVYEQCGGCQLQHLAYSQQLREKRDIVIQSLERHTKFKVENMEIKETIGMDNPWNYRNK 141
Query: 104 AKLAV-RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
++ + R S S + GLY +H++V I C HP N ++R+ +++ NV Y+E
Sbjct: 142 SQFQIGRSQSGSIIAGLYGLDSHDIVPIKDCIVQHPATNKTTGIVRRILEDFNVSVYNER 201
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
R GD+R + V + G+VQ+ LV + E P+ +++ +
Sbjct: 202 KRKGDVRTIVTRVG-----------FETGEVQVVLV--TAKETLPHKEEIVKAIQ----- 243
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
R + S+ N + +VIFG + + L G+T E +G + L+ +F Q N
Sbjct: 244 ----KRLPEVKSIIQNVNGAKTSVIFGEKTKQLAGKTVIQEVLGDVSFELSARAFFQLNP 299
Query: 283 RAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
L +++K V D Y G G IG+ +A K V+ +++ KES +K
Sbjct: 300 EQTVKLYDEVKKAAQLTGKEKVVDAYCGVGTIGMWVADGAK--EVRGMDVIKESIDDAKK 357
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPPRKGLDS 385
N H N+ +++ G+ DV++VDPPR G DS
Sbjct: 358 -----------NAKKHGMANA----TYVTGTAEHWLPKWTKEGFRPDVVIVDPPRTGCDS 402
Query: 386 SLVHALQSI 394
+ + ++ +
Sbjct: 403 TFLDTIKKV 411
>gi|206968113|ref|ZP_03229069.1| RNA methyltransferase, TrmA family [Bacillus cereus AH1134]
gi|206737033|gb|EDZ54180.1| RNA methyltransferase, TrmA family [Bacillus cereus AH1134]
Length = 459
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 88/365 (24%), Positives = 151/365 (41%), Gaps = 61/365 (16%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF--TFDSCRLYGWRCRA 104
CP ++ C GC + N R I+V + K+ T + +R ++
Sbjct: 80 CPVYEECGGCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKS 139
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E +
Sbjct: 140 QLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQ 199
Query: 165 TGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 200 KGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--IAEV---- 238
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ---QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLNP 295
Query: 283 RAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+L + +K + D Y G G IGL LA N +++
Sbjct: 296 EQTVVLYNEAKKAAALTGDEKIVDAYCGVGTIGLWLA-------------NDAAEVRGMD 342
Query: 341 TVSRLPKSVDGNISWHNADNSI----EPLSWLVG-------SDVLVVDPPRKGLDSSLVH 389
+ N H N+ + WL DV+VVDPPR G D L+
Sbjct: 343 VIPEAIADARKNAKCHGFTNTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLE 402
Query: 390 ALQSI 394
+ +
Sbjct: 403 TILKV 407
>gi|229159573|ref|ZP_04287587.1| Uncharacterized RNA methyltransferase [Bacillus cereus R309803]
gi|228623875|gb|EEK80687.1| Uncharacterized RNA methyltransferase [Bacillus cereus R309803]
Length = 459
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 89/358 (24%), Positives = 158/358 (44%), Gaps = 47/358 (13%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF---TFDSCRLYGWRCR 103
CP ++ C GC + N R I+V +A + + + L + T + +R +
Sbjct: 80 CPVYEECGGCQLQHLDYKEQLNQKRDIVV-QAFEKYMNNSLEERIRPTLGMENPWHYRNK 138
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
++L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E
Sbjct: 139 SQLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKK 198
Query: 164 RTGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
+ G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 199 QKGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--IAEV--- 238
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ----QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLN 294
Query: 282 TRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L + +K + + D Y G G IGL L A V+ +++ E+
Sbjct: 295 PEQTVVLYDEAKKAAALTGNEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIADAR 352
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
K R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 353 KNAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|308172559|ref|YP_003919264.1| RNA methyltransferase, TrmA family [Bacillus amyloliquefaciens DSM
7]
gi|384158236|ref|YP_005540309.1| RNA methyltransferase, TrmA family protein [Bacillus
amyloliquefaciens TA208]
gi|384163113|ref|YP_005544492.1| trmA family RNA methyltransferase [Bacillus amyloliquefaciens LL3]
gi|384167276|ref|YP_005548654.1| RNA methyltransferase [Bacillus amyloliquefaciens XH7]
gi|307605423|emb|CBI41794.1| RNA methyltransferase, TrmA family [Bacillus amyloliquefaciens DSM
7]
gi|328552324|gb|AEB22816.1| RNA methyltransferase, TrmA family protein [Bacillus
amyloliquefaciens TA208]
gi|328910668|gb|AEB62264.1| RNA methyltransferase, TrmA family [Bacillus amyloliquefaciens LL3]
gi|341826555|gb|AEK87806.1| putative RNA methyltransferase [Bacillus amyloliquefaciens XH7]
Length = 458
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 85/355 (23%), Positives = 154/355 (43%), Gaps = 46/355 (12%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDF-------TFDSCRLYGWRCR 103
CP ++ C GC + + ++ + D + IG LD T + +R +
Sbjct: 77 CPIYKQCGGCQLQHMTYEGQLLFKQKQVKDVLERIGKLDLSSVIVHPTLGMEDPWNYRNK 136
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A++ V + G YQ+ +H+++D+ C + + AV+ ++ V+ Y+E+
Sbjct: 137 AQVPVGEREGGLVAGFYQQRSHDIIDMSACLIQQSKNDEAVQAVKDICANYGVKAYNEER 196
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL--ESLAEFLWR 221
G LR++ + RY ++ +V+ +R P+ K+ + A+F
Sbjct: 197 HKGWLRHIMV-------------RYGVVTGEMMIVFITRTSDFPHKAKIIEDITAQF--- 240
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ S+ N + NVIFGN + GE ++ +G + +++ SF Q N
Sbjct: 241 --------PHVKSIVQNINPNKTNVIFGNETSVIWGEEYIYDLIGDVKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L K +Y +V D Y G G I L L A++ + V VEI E+ +
Sbjct: 293 PEQTKVLYDKALEYAELQGKETVIDAYCGIGTISLFL--AKQAKKVYGVEIVPEA-IEDA 349
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
K + L + + A+ I W + +D LVVDPPRKG D +L+ +
Sbjct: 350 KRNAELNGITNAEFAVGEAETVIP--KWYEEGITADTLVVDPPRKGCDEALLRTI 402
>gi|430757207|ref|YP_007210611.1| RNA methyltransferase YefA [Bacillus subtilis subsp. subtilis str.
BSP1]
gi|430021727|gb|AGA22333.1| putative RNA methyltransferase YefA [Bacillus subtilis subsp.
subtilis str. BSP1]
Length = 459
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 85/355 (23%), Positives = 154/355 (43%), Gaps = 46/355 (12%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDF-------TFDSCRLYGWRCR 103
CP ++ C GC + + ++ + D + IG LD T + +R +
Sbjct: 77 CPIYKQCGGCQLQHMTYEGQLLFKQKQVKDVLERIGKLDLSNVTVHPTLGMEDPWNYRNK 136
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A++ V + G YQ+ +H+++D+ C + + AV+ ++ V+ Y+E+
Sbjct: 137 AQVPVGEREGGLVAGFYQQRSHDIIDMSACLIQQSKNDEAVQAVKDICANYGVKAYNEER 196
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL--ESLAEFLWR 221
G LR++ + RY ++ +V+ +R P+ K+ + A+F
Sbjct: 197 HKGWLRHIMV-------------RYGVVTGEMMIVFITRTSDFPHKAKIIEDITAQF--- 240
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ S+ N + NVIFGN + GE ++ +G + +++ SF Q N
Sbjct: 241 --------PHVKSIVQNINPNKTNVIFGNETNVIWGEEYIYDLIGDVKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L K +Y +V D Y G G I L L A++ + V VEI E+ +
Sbjct: 293 PEQTKVLYDKALEYAELQGEETVIDAYCGIGTISLFL--AKQAKKVYGVEIVPEA-IEDA 349
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
K + L + + A+ I W + +D LVVDPPRKG D +L+ +
Sbjct: 350 KRNAELNGITNAEFAVGEAETVIP--KWYEEGITADTLVVDPPRKGCDEALLRTI 402
>gi|423398621|ref|ZP_17375822.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG2X1-1]
gi|401646789|gb|EJS64404.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG2X1-1]
Length = 459
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 87/357 (24%), Positives = 155/357 (43%), Gaps = 45/357 (12%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSI--GLLDFTFDSCRLYGWRCRA 104
CP ++ C GC + N R I+V + + + T + +R ++
Sbjct: 80 CPVYEECGGCQLQHLDYKEQLNQKRDIVVQAFEKYMNNTLEEKIRPTLGMENPWHYRNKS 139
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E +
Sbjct: 140 QLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQ 199
Query: 165 TGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 200 KGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--IAEV---- 238
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ---QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLNP 295
Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+L + +K + + D Y G G IGL L A V+ +++ E+ +K
Sbjct: 296 EQTVVLYDEAKKAAALTGNEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIEDAKK 353
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 354 NAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|333372378|ref|ZP_08464307.1| 23S rRNA (uracil-5-)-methyltransferase [Desmospora sp. 8437]
gi|332974302|gb|EGK11234.1| 23S rRNA (uracil-5-)-methyltransferase [Desmospora sp. 8437]
Length = 465
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 94/364 (25%), Positives = 151/364 (41%), Gaps = 68/364 (18%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIVD----EATDFFKSIGLLDFT-----FDSCRLYGWRCRA 104
CP F C GC + ++ P ++ + D F IG L+ + +R +A
Sbjct: 78 CPVFAQCGGCQLQ-HIAYPAQLESKRRQVVDAFARIGGLEEVTILPVLGMEEPWSYRNKA 136
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
++ V G G Y G+H ++ C P + ++ +++ I+EL++ PYDE
Sbjct: 137 QVPVGGGKGKVEAGFYAAGSHQIIPFDRCLIQQPENDRTIQQVKEWIRELDIPPYDEKKH 196
Query: 165 TGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGG 224
G LR+V M T +T +V + LV N P + L L
Sbjct: 197 RGCLRHV-MVRTGIHTQ----------EVMVVLVTN-----GPELPHRKQLVASL----- 235
Query: 225 SRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRA 284
R R + S+ N Q NV+ G R L GE + +G + +++P SF Q N
Sbjct: 236 -RERVPGLTSLIQNIQPHRTNVVLGKESRVLWGEPVIHDRIGHVRFAISPHSFFQVNPVQ 294
Query: 285 FDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTV 342
++L ++++ + D Y G G IGL LA KE+ V
Sbjct: 295 TEVLYEQVRRMAALTGEEIIIDAYCGIGTIGLYLA--------------KEAARVL--GV 338
Query: 343 SRLPKSVDGNISWHNAD-NSIEPLSWLVG---------------SDVLVVDPPRKGLDSS 386
+P++V+ + HNA+ N I+ S+ G DV++VDPPRKG
Sbjct: 339 ESIPQAVED--ARHNAELNGIDHASFEAGPAEEVMPRWAREGIRPDVMIVDPPRKGCAPE 396
Query: 387 LVHA 390
L+ A
Sbjct: 397 LLDA 400
>gi|384174349|ref|YP_005555734.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus subtilis
subsp. subtilis str. RO-NN-1]
gi|349593573|gb|AEP89760.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus subtilis
subsp. subtilis str. RO-NN-1]
Length = 459
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 85/355 (23%), Positives = 154/355 (43%), Gaps = 46/355 (12%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDF-------TFDSCRLYGWRCR 103
CP ++ C GC + + ++ + D + IG LD T + +R +
Sbjct: 77 CPIYKQCGGCQLQHMTYEGQLLFKQKQVKDVLERIGKLDLSKVTVHPTLGMEDPWNYRNK 136
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A++ V + G YQ+ +H+++D+ C + + AV+ ++ V+ Y+E+
Sbjct: 137 AQVPVGEREGGLVAGFYQQRSHDIIDMSACLIQQSKNDEAVQAVKDICATYGVKAYNEER 196
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL--ESLAEFLWR 221
G LR++ + RY ++ +V+ +R P+ K+ + A+F
Sbjct: 197 HKGWLRHIMV-------------RYGVVTGEMMIVFITRTNDFPHKAKIIEDITAQF--- 240
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ S+ N + NVIFGN + GE ++ +G + +++ SF Q N
Sbjct: 241 --------PHVKSIVQNINPNKTNVIFGNETNVIWGEEYIYDLIGDVKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L K +Y +V D Y G G I L L A++ + V VEI E+ +
Sbjct: 293 PEQTKVLYDKALEYAELQGEETVIDAYCGIGTISLFL--AKQAKKVYGVEIVPEA-IEDA 349
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
K + L + + A+ I W + +D LVVDPPRKG D +L+ +
Sbjct: 350 KRNAELNGITNAEFAVGEAETVIP--KWYEEGIKADTLVVDPPRKGCDEALLRTI 402
>gi|384174481|ref|YP_005555866.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus subtilis
subsp. subtilis str. RO-NN-1]
gi|349593705|gb|AEP89892.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus subtilis
subsp. subtilis str. RO-NN-1]
Length = 466
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 87/369 (23%), Positives = 157/369 (42%), Gaps = 67/369 (18%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIV---DEATDFFKSIGLLDFTFDSCRLYGWRCR 103
CP ++ C GC + + R I++ + T F + T + +R +
Sbjct: 82 CPVYEQCGGCQLQHLAYSQQLREKRDIVIQSLERHTKFKVENMEIKETIGMDNPWNYRNK 141
Query: 104 AKLAV-RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
++ + R S S + GLY +H++V I C HP N ++R+ +++ NV Y+E
Sbjct: 142 SQFQIGRSQSGSIIAGLYGLDSHDIVPIKDCIVQHPATNKTTGIVRRILEDFNVSVYNER 201
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
R GD+R + V + G+VQ+ LV + E P+ +++ + +
Sbjct: 202 KRKGDVRTIVTRVG-----------FETGEVQVVLV--TAKESLPHKEEIVKVIQ----- 243
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
R + S+ N + +VIFG + + L G+T E +G + L+ +F Q N
Sbjct: 244 ----KRLPEVKSIIQNVNGAKTSVIFGEKTKPLAGKTVIQEVLGDVSFELSARAFFQLNP 299
Query: 283 RAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
L +++K V D Y G G IG+ +A K V+ +++ KES +K
Sbjct: 300 EQTVKLYDEVKKAAQLTGKEKVVDAYCGVGTIGMWVADGAK--EVRGMDVIKESIDDAKK 357
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPPRKGLDS 385
N H N+ +++ G+ DV++VDPPR G DS
Sbjct: 358 -----------NAKKHGMANA----TYVTGTAEHWLPKWTKEGFRPDVVIVDPPRTGCDS 402
Query: 386 SLVHALQSI 394
+ + ++ +
Sbjct: 403 TFLDTIKKV 411
>gi|260584770|ref|ZP_05852515.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Granulicatella elegans
ATCC 700633]
gi|260157427|gb|EEW92498.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Granulicatella elegans
ATCC 700633]
Length = 455
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 84/324 (25%), Positives = 161/324 (49%), Gaps = 38/324 (11%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+G+R +A++ VR + G +++ +H++V + P I+ + ++R +++ +E
Sbjct: 127 FGYRNKAQIPVRMVNGLLTTGFFKKNSHDLVSMEDFHIQDPEIDRIILVVRDILRKYAIE 186
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDK-LESLA 216
YDE+ TGDLR++ R +V I LV +R EK + ++ +
Sbjct: 187 AYDEEKHTGDLRHI-----------IVRRGLRTSQVMIILV--TRTEKFVQKEAVVDQIT 233
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
+ L + S+ N Q +NVI G++ + L GE F E + +++ S
Sbjct: 234 QQLPE----------VVSIVQNIQPHQSNVIMGSQKKVLFGEDAFQEVLMEFTFTISSRS 283
Query: 277 FGQANTRAFDILLRK-LQKYVPYG-ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q NT ++L + +Q G +V D Y G G +SLA A++ + V +EI ++
Sbjct: 284 FFQVNTIQTEVLYHEAIQAAGLTGDETVVDAYCGIGT--MSLAFAKRAKKVYAMEIVPDA 341
Query: 335 QLSFEKTVSRLPKSVDGNISWH-NADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHA 390
+ K +R+ +D N+++ A + P +W+ + DV+VVDPPRKGLD + + A
Sbjct: 342 -IQMAKENARI-NQID-NVTFEVGAAEKVMP-TWVDSGLQPDVIVVDPPRKGLDGAFIDA 397
Query: 391 LQSIGSAERKAKSLSESSSSMVKE 414
++ + RK +S + +++ ++
Sbjct: 398 --AVKTKARKLVYVSCNPATLARD 419
>gi|385812618|ref|YP_005849009.1| TrmA family tRNA (Uracil-5-)-methyltransferase [Lactobacillus
fermentum CECT 5716]
gi|299783515|gb|ADJ41513.1| TrmA family tRNA (Uracil-5-)-methyltransferase [Lactobacillus
fermentum CECT 5716]
Length = 469
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 91/337 (27%), Positives = 151/337 (44%), Gaps = 58/337 (17%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+G+R +A++ VR P G Y+ G+H++V I P I+ V ++R +++ V
Sbjct: 128 FGYRNKAQVPVRMVKGQPTTGFYKRGSHDLVPIEDFYIQDPAIDQTVLVVRDLLRKYQVP 187
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
YDE+ +R V + Y + +V + LV N E P+ ++ E
Sbjct: 188 AYDEETHRRVIRTVMV-----------RRGYYSHQVMVVLVTNG--EHFPHVAEITR--E 232
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
R G I S+ N NVI G + L GE + + GID +++P SF
Sbjct: 233 ISERVPG-------IKSIVQNVNDKRTNVILGTKNHLLWGEPTIHDTLLGIDFTISPLSF 285
Query: 278 GQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q N + + L + + S V D Y G G I SLA A+ + V VEI
Sbjct: 286 YQVNPQQTERLYQTAIENAGLDGSKTVIDAYCGIGTI--SLAVAKHAKHVYGVEI----- 338
Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPPR 380
+P ++ + + A+N IE +++VG DV++VDPPR
Sbjct: 339 ---------VPAAI-ADAKQNAANNGIENATFVVGKAEEQFAKWQAEGLKPDVVIVDPPR 388
Query: 381 KGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKR 417
KGLD+ L+ A + A +K +S + +++V++ +R
Sbjct: 389 KGLDAQLIEATGKM--APQKVIYVSCNPATLVRDLQR 423
>gi|410459585|ref|ZP_11313327.1| TrmA family RNA methyltransferase, partial [Bacillus azotoformans
LMG 9581]
gi|409930073|gb|EKN67092.1| TrmA family RNA methyltransferase, partial [Bacillus azotoformans
LMG 9581]
Length = 474
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 95/378 (25%), Positives = 153/378 (40%), Gaps = 86/378 (22%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVD----------EATDFFKSIGLLDFTFDSCR 96
CP ++ C GC + R I++ E D ++IG+ +
Sbjct: 108 CPIYEECGGCQLQHLDYKQQLKEKRDIVIQALERHTNLNIEQLDIRETIGMEN------- 160
Query: 97 LYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNV 156
+G+R +++L V L GLY +H ++DI C HP N ++++Q +++LN+
Sbjct: 161 PWGYRNKSQLQVGRDEQKVLAGLYGLNSHKLIDISDCMVQHPSTNKVTQIVKQILEDLNI 220
Query: 157 EPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLA 216
Y+E R G +R + V + +G++Q+ LV R + P D +A
Sbjct: 221 PIYNEKKRKGFVRTIVTRVG-----------FASGQIQLVLVTTKR--EFPEVDNF--IA 265
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
E R ++SV N ++IFG+ HL GE E +G + L+ +
Sbjct: 266 EV-------NKRLPEVNSVLQNVNGDKTSIIFGDETIHLQGEEFIQETLGDLSFELSARA 318
Query: 277 FGQANTRAFDILLRKLQKYVPYGASVT------DLYAGAGVIGLSLA-AARKCRSVKCVE 329
F Q N + KL V A +T D Y G G IGL LA A + R + +E
Sbjct: 319 FFQLNP----VQTVKLYNEVKKAAQLTGKEKLVDAYCGVGTIGLWLAKGASEIRGMDTIE 374
Query: 330 INKESQLSFEKTVSRLPKSVDG--NISWHNADNSIEPLS----WLVG-------SDVLVV 376
VD N + H+ +N+ + WL D++VV
Sbjct: 375 ----------------DSIVDARENAAKHDLENTYYAVGKAEYWLPKWEKEGWHPDIIVV 418
Query: 377 DPPRKGLDSSLVHALQSI 394
DPPR G D + + I
Sbjct: 419 DPPRVGCDQKFLETVFKI 436
>gi|168178950|ref|ZP_02613614.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum NCTC 2916]
gi|182670032|gb|EDT82008.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum NCTC 2916]
Length = 461
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 91/375 (24%), Positives = 158/375 (42%), Gaps = 85/375 (22%)
Query: 54 CPHFQSCSGCT---------HEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRL------- 97
CP ++ C GC EF R I D + IG LD D ++
Sbjct: 77 CPIYKQCGGCQVQHYSYKAQLEFKKQRVI------DSLERIGKLDI--DKIKIEDTIGME 128
Query: 98 --YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELN 155
Y +R + ++ VR IG Y+ TH V D+ C + + ++++R + + N
Sbjct: 129 NPYRYRNKIQMPVRFEKGEIKIGFYKSRTHEVADVKECFIQDEQADKIIQIIRNWMVKHN 188
Query: 156 VEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL--E 213
+ Y+E+ G +R++ + + ++N ++ + +V N + E+ P ++L E
Sbjct: 189 ISAYNEETGKGFIRHIMV-----------RKAFKNKELMLVIVTN-KEEEIPYKEELINE 236
Query: 214 SLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLA 273
+ EF I S+ N T NVI G + L G+ + + +++
Sbjct: 237 VIKEF-----------SNIKSIIQNINTKKTNVILGEKCITLWGKDTITDYIDKFKFNIS 285
Query: 274 PSSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEIN 331
P SF Q N ++L +K ++ V D Y G G I L L ++K + V VEI
Sbjct: 286 PLSFFQVNPIQTEVLYKKALEFANLKGEEIVFDAYCGTGTISLFL--SQKAKKVYGVEII 343
Query: 332 KESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVG---------------SDVLVV 376
KE ++D N + +N I+ + VG ++V+VV
Sbjct: 344 KE--------------AID-NAKDNAKENRIDNAEFFVGKSEEVIPDLIDKGIKAEVVVV 388
Query: 377 DPPRKGLDSSLVHAL 391
DPPRKG + +L+ A+
Sbjct: 389 DPPRKGCEKTLLEAI 403
>gi|229028277|ref|ZP_04184413.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1271]
gi|228733041|gb|EEL83887.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1271]
Length = 459
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 88/358 (24%), Positives = 158/358 (44%), Gaps = 47/358 (13%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRL---YGWRCR 103
CP ++ C GC + N R I+V +A + + + L + + + + +R +
Sbjct: 80 CPVYEECGGCQLQHLDYKEQLNQKRDIVV-QAFEKYMNNSLEEKIRPTLGMENPWHYRNK 138
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
++L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E
Sbjct: 139 SQLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKK 198
Query: 164 RTGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
+ G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 199 QKGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--IAEV--- 238
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ----QKQMPSVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLN 294
Query: 282 TRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L + +K + D Y G G IGL L A V+ +++ E+
Sbjct: 295 PEQTVVLYDEAKKAAALTGDEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIADAR 352
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
K R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 353 KNAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|319647052|ref|ZP_08001278.1| YefA protein [Bacillus sp. BT1B_CT2]
gi|317390876|gb|EFV71677.1| YefA protein [Bacillus sp. BT1B_CT2]
Length = 458
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 84/355 (23%), Positives = 148/355 (41%), Gaps = 46/355 (12%)
Query: 54 CPHFQSCSGCT-HEFNLHRPIIVDE--ATDFFKSIGLLDF-------TFDSCRLYGWRCR 103
CP ++ C GC N ++ + D + IG LD T + +R +
Sbjct: 77 CPIYKQCGGCQLQHINYEGQLLYKQKQVKDVLERIGKLDLSRITVHPTLGMEDPWNYRNK 136
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A++ V + G YQ+ +H ++D+ C + V+ +++ + ++ Y+E+
Sbjct: 137 AQVPVGEREGGLIAGFYQQRSHEIIDMNECLIQQSENDRVVQAIKEICGKYGIKAYNEER 196
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL--ESLAEFLWR 221
G LR++ + RY ++ +V+ +R P+ K+ E A F
Sbjct: 197 HKGWLRHIMV-------------RYGAVTGEMMVVFITRTNDFPHKAKIVEEITAAF--- 240
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ S+ N NVIFG+ + GE ++ +GGI +++ SF Q N
Sbjct: 241 --------PHVKSIVQNINPKKTNVIFGDETTVIWGEEYIYDTIGGIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L K +Y +V D Y G G I L L A++ + V VEI E + E
Sbjct: 293 PEQTKVLYDKALEYAELNGEETVIDAYCGIGTISLFL--AKQAKKVYGVEIVPE---AIE 347
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ N + + + W + +D LVVDPPRKG D +L+ +
Sbjct: 348 DAKRNAELNGIENAEFEVGEAEVVIPKWYEEGIAADTLVVDPPRKGCDEALLRTI 402
>gi|222055490|ref|YP_002537852.1| RNA methyltransferase, TrmA family [Geobacter daltonii FRC-32]
gi|221564779|gb|ACM20751.1| RNA methyltransferase, TrmA family [Geobacter daltonii FRC-32]
Length = 468
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 84/304 (27%), Positives = 138/304 (45%), Gaps = 32/304 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R AKL V G P+IG+Y+ +H V+D+ C HHP I+ +E ++ GIK+ V Y
Sbjct: 142 YRNSAKLVVSGKFADPVIGIYRRNSHEVLDVAGCAVHHPLIDTIIEAVKAGIKKGKVPIY 201
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
+ + G LRY+ + + SE V S NE L LA+ L
Sbjct: 202 NPKSQMGLLRYLVIRI---------SESANKAMVIFVTAERSYNE-------LHHLAKHL 245
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
++ + + N +S NVI G + + E +G ++P SF Q
Sbjct: 246 ------KNAVPEVSVIAQNINSSLGNVILGQKDHFVTKEQVLSAIMGDTKFLISPRSFFQ 299
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
N+ + I+ K++++ S V DLY G G G+SL AR+C+ V +E +
Sbjct: 300 VNSGSARIIYEKVREWAALTGSERVLDLYCGIG--GISLFLARQCKEVTGIEAVDAAVAD 357
Query: 338 FEKTVSRLPKSVDGNISWHNADNS--IEPLSWLVGS-DVLVVDPPRKGLDSSLVHALQSI 394
E+ + GN + D + IE + D++V++PPRKG D ++ ++
Sbjct: 358 AERNAQL---NGIGNCRFIAGDVAKLIEEMRREDKKVDLIVLNPPRKGCDEQVLKQASAL 414
Query: 395 GSAE 398
G A+
Sbjct: 415 GPAK 418
>gi|452975699|gb|EME75517.1| RumA-like 23S rRNA methyltransferase YefA [Bacillus sonorensis L12]
Length = 461
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 86/355 (24%), Positives = 151/355 (42%), Gaps = 46/355 (12%)
Query: 54 CPHFQSCSGCT-HEFNLHRPIIVDE--ATDFFKSIGLLDF-------TFDSCRLYGWRCR 103
CP ++ C GC N ++ + D + IG LD T + +R +
Sbjct: 77 CPIYKQCGGCQLQHINYEGQLLYKQKQVKDVLERIGKLDLSRITVYPTLGMEDPWNYRNK 136
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A++ V + G YQ+ +H+++D+ C + V+ +++ + ++ Y+E+
Sbjct: 137 AQVPVGEREGGLIAGFYQQRSHDIIDMNECLIQQSENDRVVQAIKEICGKYGIKAYNEER 196
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL--ESLAEFLWR 221
G LR++ + RY ++ +V+ +R P+ K+ E A F
Sbjct: 197 HKGWLRHIMV-------------RYGAVTGEMMVVFITRTNDFPHKAKIVEEITAAF--- 240
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ S+ N NVIFG+ + GE ++ +GGI +++ SF Q N
Sbjct: 241 --------PHVKSIVQNINPKKTNVIFGDETTVIWGEEYIYDTIGGIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L K +Y +V D Y G G I L L A++ + V VEI E+ +
Sbjct: 293 PEQTKVLYDKALEYAELNGEETVIDAYCGIGTISLFL--AKQAKKVYGVEIVPEA-IEDA 349
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
K + L + A+ I W + +D LVVDPPRKG D +L+ +
Sbjct: 350 KRNAELNGIENAEFEVGEAEAVIP--KWYEEGITADTLVVDPPRKGCDEALLRTI 402
>gi|226950817|ref|YP_002805908.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A2 str. Kyoto]
gi|226841903|gb|ACO84569.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A2 str. Kyoto]
Length = 461
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 91/375 (24%), Positives = 158/375 (42%), Gaps = 85/375 (22%)
Query: 54 CPHFQSCSGCT---------HEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRL------- 97
CP ++ C GC EF R I D + IG LD D ++
Sbjct: 77 CPIYKQCGGCQVQHYSYKAQLEFKKQRVI------DSLERIGKLDI--DKIKIEDTIGME 128
Query: 98 --YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELN 155
Y +R + ++ VR IG Y+ TH V D+ C + + ++++R + + N
Sbjct: 129 NPYRYRNKIQMPVRFEKGEIKIGFYKSRTHEVADVKECFIQDEQADKIIQIIRNWMVKHN 188
Query: 156 VEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL--E 213
+ Y+E+ G +R++ + + ++N ++ + +V N + E+ P ++L E
Sbjct: 189 ISAYNEETGKGFIRHIMV-----------RKAFKNKELMLVIVTN-KEEEIPYKEELINE 236
Query: 214 SLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLA 273
+ EF I S+ N T NVI G + L G+ + + +++
Sbjct: 237 VIKEF-----------SNIKSIIQNINTKKTNVILGEKCITLWGKDTITDYIDKFKFNIS 285
Query: 274 PSSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEIN 331
P SF Q N ++L +K ++ V D Y G G I L L ++K + V VEI
Sbjct: 286 PLSFFQVNPIQTEVLYKKALEFANLKGEEIVFDAYCGTGTISLFL--SQKAKKVYGVEII 343
Query: 332 KESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVG---------------SDVLVV 376
KE ++D N + +N I+ + VG ++V+VV
Sbjct: 344 KE--------------AID-NAKDNAKENRIDNAEFFVGKSEEVIPDLIDKGIKAEVVVV 388
Query: 377 DPPRKGLDSSLVHAL 391
DPPRKG + +L+ A+
Sbjct: 389 DPPRKGCEKTLLEAI 403
>gi|52079174|ref|YP_077965.1| RNA methyltransferase YefA [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|404488041|ref|YP_006712147.1| RumA-like 23S rRNA methyltransferase YefA [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|52002385|gb|AAU22327.1| putative RNA methyltransferase YefA [Bacillus licheniformis DSM 13
= ATCC 14580]
gi|52347043|gb|AAU39677.1| putative RumA-like 23S rRNA methyltransferase YefA [Bacillus
licheniformis DSM 13 = ATCC 14580]
Length = 462
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 84/355 (23%), Positives = 148/355 (41%), Gaps = 46/355 (12%)
Query: 54 CPHFQSCSGCT-HEFNLHRPIIVDE--ATDFFKSIGLLDF-------TFDSCRLYGWRCR 103
CP ++ C GC N ++ + D + IG LD T + +R +
Sbjct: 77 CPIYKQCGGCQLQHINYEGQLLYKQKQVKDVLERIGKLDLSRITVHPTLGMEDPWNYRNK 136
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A++ V + G YQ+ +H ++D+ C + V+ +++ + ++ Y+E+
Sbjct: 137 AQVPVGEREGGLIAGFYQQRSHEIIDMNECLIQQSENDRVVQAIKEICGKYGIKAYNEER 196
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL--ESLAEFLWR 221
G LR++ + RY ++ +V+ +R P+ K+ E A F
Sbjct: 197 HKGWLRHIMV-------------RYGAVTGEMMVVFITRTNDFPHKAKIVEEITAAF--- 240
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ S+ N NVIFG+ + GE ++ +GGI +++ SF Q N
Sbjct: 241 --------PHVKSIVQNINPKKTNVIFGDETTVIWGEEYIYDTIGGIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L K +Y +V D Y G G I L L A++ + V VEI E + E
Sbjct: 293 PEQTKVLYDKALEYAELNGEETVIDAYCGIGTISLFL--AKQAKKVYGVEIVPE---AIE 347
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ N + + + W + +D LVVDPPRKG D +L+ +
Sbjct: 348 DAKRNAELNGIENAEFEVGEAEVVIPKWYEEGIAADTLVVDPPRKGCDEALLRTI 402
>gi|402834464|ref|ZP_10883066.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sp. CM52]
gi|402278082|gb|EJU27148.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sp. CM52]
Length = 457
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 92/366 (25%), Positives = 150/366 (40%), Gaps = 65/366 (17%)
Query: 54 CPHFQSCSGC-----THEFNLH--RPIIVDEATDFFKSIGLLDF-TFDSCRLYGWRCRAK 105
CP + C GC ++E LH R +VD + G+ + + +R + +
Sbjct: 77 CPIYDFCGGCQLQHLSYEGQLHWKRQQVVDAVERIGRLSGIEVLPVLGAKEPWFYRNKMQ 136
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
V +IG + +G+H+++D C+ N V ++R+ + L + YDED T
Sbjct: 137 FPVGRKRGKTVIGCFAKGSHDIIDTRDCRIQKEGNNTIVNVMREVVDRLRIPIYDEDRHT 196
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGS 225
G LR+V + NG+ + LV +++ K + + FL
Sbjct: 197 GVLRHVVGRIG------------ENGEAMVVLVTATKD-----LPKAKEIIRFL------ 233
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
+ R + SV N QT NNVI G + L G+ + +G + S++ SF Q NT
Sbjct: 234 KERVPNLRSVQQNIQTYRNNVILGRETKLLWGKPTIPDRIGKLHFSISARSFFQVNTEQA 293
Query: 286 DILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
+L K +Y +V D Y G G I L L A+K V +EI K + +K
Sbjct: 294 AVLYEKALEYADLNGMETVIDAYCGTGTITLFL--AQKAHRVHGIEIVKPAIDDAKKNAR 351
Query: 344 RLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPPRKGLDSSLV 388
DN I+ +LVG +V+VVDPPR G +++
Sbjct: 352 ---------------DNRIKNTVFLVGDATKLMPRLYHENVHPNVIVVDPPRAGCTETVL 396
Query: 389 HALQSI 394
++
Sbjct: 397 KTFAAM 402
>gi|296082358|emb|CBI21363.3| unnamed protein product [Vitis vinifera]
Length = 128
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 48/68 (70%), Positives = 57/68 (83%)
Query: 326 KCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDS 385
+ +I+KE++LSFEKTV LPKS+DG I WH+AD SI PLSWLVGS V+VVDPPRKGLD
Sbjct: 58 QMAQIDKEAKLSFEKTVGGLPKSIDGTIRWHHADTSIGPLSWLVGSGVVVVDPPRKGLDP 117
Query: 386 SLVHALQS 393
SLV AL+S
Sbjct: 118 SLVDALRS 125
>gi|168216552|ref|ZP_02642177.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens NCTC 8239]
gi|182381468|gb|EDT78947.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens NCTC 8239]
Length = 455
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 93/374 (24%), Positives = 161/374 (43%), Gaps = 69/374 (18%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDFTFDSCRL-----YGWRCRAK 105
C ++ C GC + ++ + D D IG LD + L + +R + +
Sbjct: 73 CAIYKRCGGCKLQHASYKAQLDFKWDRVKDCVSKIGKLDPSIVKYPLGMENPWRYRNKVQ 132
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED--- 162
L + + IG + +H+++D+ C + V+L R+ I++ N+ PY+ D
Sbjct: 133 LPIGLINGEVKIGFFAPRSHDIIDMESCLIQDEIGDKVVKLTREWIEKFNIRPYNVDGEY 192
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
D G +R++ + + +V + LV N EK P+ E + + +N
Sbjct: 193 DEKGIVRHIMI-----------RRGFTTNEVMVVLVTNG--EKLPHK---EEFVDLMVKN 236
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
I SV N + NVI G + L GE + +G +++P SF Q N
Sbjct: 237 IPG------IKSVIQNINSKKTNVILGLESKTLWGEDTISDYIGDFRFNISPLSFFQVNP 290
Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
++L K +Y + V D Y G G I L L ++K + V VEI
Sbjct: 291 TQTEVLYGKALEYANLTGNEEVFDAYCGTGTITLFL--SQKAKKVYGVEI---------- 338
Query: 341 TVSRLPKSVDGNISWHNA-DNSIEPLSWLVG---------------SDVLVVDPPRKGLD 384
+P+++D +W NA +N +E + + VG +DV+VVDPPRKG D
Sbjct: 339 ----IPQAIDN--AWINAKENKVENVEFFVGESEVVIPDLINKGVKADVVVVDPPRKGCD 392
Query: 385 SSLVHALQSIGSAE 398
L+ ++ +I + +
Sbjct: 393 KKLLDSITNIDAKK 406
>gi|398305378|ref|ZP_10508964.1| putative RNA methyltransferase [Bacillus vallismortis DV1-F-3]
Length = 461
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 85/355 (23%), Positives = 154/355 (43%), Gaps = 46/355 (12%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDF-------TFDSCRLYGWRCR 103
CP ++ C GC + + ++ + D + IG LD T + +R +
Sbjct: 77 CPIYKQCGGCQLQHMTYEGQLLFKQKQVKDVLERIGKLDLSNVTVHPTLGMEDPWNYRNK 136
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A++ V + G YQ+ +H+++D+ C + + AV+ ++ + V+ Y+E+
Sbjct: 137 AQVPVGEREGGLVAGFYQQRSHDIIDMSACLIQQSKNDEAVQAVKDICAKYGVKAYNEER 196
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL--ESLAEFLWR 221
G LR++ + RY ++ +V+ +R P+ K+ + A F
Sbjct: 197 HKGWLRHIMV-------------RYGVVTGEMMIVFITRTNDFPHKAKIIEDITAAF--- 240
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ S+ N + NVIFGN + GE ++ +G + +++ SF Q N
Sbjct: 241 --------PHVKSIVQNINPNKTNVIFGNETNVIWGEEYIYDLIGDVKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L K +Y +V D Y G G I L L A++ + V VEI E+ +
Sbjct: 293 PEQTKVLYDKALEYAELQGEETVIDAYCGIGTISLFL--AKQAKKVYGVEIVPEA-IEDA 349
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
K + L + + A+ I W + +D LVVDPPRKG D +L+ +
Sbjct: 350 KRNAELNGITNAEFAVGEAETVIP--KWYEEGITADTLVVDPPRKGCDEALLRTI 402
>gi|296184699|ref|ZP_06853110.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
carboxidivorans P7]
gi|296050481|gb|EFG89904.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
carboxidivorans P7]
Length = 463
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 87/369 (23%), Positives = 162/369 (43%), Gaps = 66/369 (17%)
Query: 54 CPHFQSCSGCT---HEFNLHRPIIVDEATDFFKSIGLLDFT----FDSCRL---YGWRCR 103
C ++ C GC + + D + IG L + D+ + Y +R +
Sbjct: 82 CSIYKRCGGCQLQHYSYQAQLDFKKQRVKDCIERIGKLKISEVNLHDTIGMNDPYRYRNK 141
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
+L V + IG Y + TH ++++ C H + ++L++ +K+ N++ Y+E
Sbjct: 142 VQLPVGEKNGEVNIGFYAQRTHEIINMDTCNIQHEAADKVLKLIKSWMKKYNIKSYNEQL 201
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNG 223
TG +R++ + + ++ +V + +V +R+ + P+ E L E L
Sbjct: 202 HTGSIRHIMV-----------RKAFKTNEVMVVVV--TRSNELPHK---EELVEMLL--- 242
Query: 224 GSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTR 283
S+E+ I S+ N + NVI G L G+ + + +G +++P SF Q N
Sbjct: 243 --ESKEN-IVSIIQNVNSKKTNVILGIECITLWGKDNISDYIGDFKFNISPLSFFQVNPV 299
Query: 284 AFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
++L K +Y +V D Y G G I L L ++K + V +EI
Sbjct: 300 QTEVLYNKALEYASLTGNETVFDAYCGTGTISLFL--SQKSKKVYGIEI----------- 346
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWLVG---------------SDVLVVDPPRKGLDSS 386
+P++++ N + N+I ++VG +DV+VVDPPRKG + S
Sbjct: 347 ---IPQAIE-NAKINAKQNNINNAEFIVGESEKIIPELIKKGIKADVVVVDPPRKGCEKS 402
Query: 387 LVHALQSIG 395
L+ A+ +
Sbjct: 403 LLEAIAQMA 411
>gi|224005783|ref|XP_002291852.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972371|gb|EED90703.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 645
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 127/486 (26%), Positives = 177/486 (36%), Gaps = 180/486 (37%)
Query: 74 IVDEATDFFKSI-----GLLDFTFDSCRLYGWRCRAKLAVR---------------GTST 113
IV A +FKSI DF LYGWR +KLAVR GTS
Sbjct: 120 IVSVAKSYFKSIQNNINTHGDFQVHVGPLYGWRTVSKLAVRADTNATTAAKSSRGGGTSA 179
Query: 114 SP------------LIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDE 161
S IGL+ +H ++ +P+C+AHHP IN VE + + E+ V PY E
Sbjct: 180 SNSIAGEQSSKKKVAIGLFLPQSHILLPVPNCRAHHPSINRVVECVTRACHEVGVVPYQE 239
Query: 162 -------------------------------DDRTGDLRYVQMAVTTYNTSLPASERYRN 190
D TG LRY+ + + ER +
Sbjct: 240 GGIRSSTGNGDGEEGAVMKGGDEVSTTTASSDKGTGQLRYIGINI----------ER-KT 288
Query: 191 GKVQITLVWNSRNEKSPNSDKLES-----------LAEFLWR------------------ 221
Q+TLVWNS K+ + K ES L + + R
Sbjct: 289 DAAQLTLVWNSSPPKNDVTSKKESGTHDVRFDDPMLGKLVNRIISMSNPNGENAEEQPAK 348
Query: 222 ------------NGGSRSREHY------------------IHSVWANFQTS--TNNVIFG 249
G R EH +HS+W N+ S +N IF
Sbjct: 349 KRRRRGNRDGTNAGAKREAEHQGGKDDNESNTTIQKETFDLHSIWINYNLSWKHSNTIFA 408
Query: 250 NR---WRHLLG-------------ETDFWENVG-----------GIDISLAPSSFGQANT 282
W+H+ G E D + +G + + P+ F QAN
Sbjct: 409 YDVSCWQHVHGAPVIVECLKFGTNENDVGKGLGRPIASPAQLSYEVPLHFPPNVFRQANL 468
Query: 283 RAFD----------ILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
AF + LRK K++P + +LY G G IGL ++ S+ + N
Sbjct: 469 DAFTHIVGRIRQRMLQLRKEMKHLP---ACVELYGGVGTIGLHISDV--VASLVSSDENP 523
Query: 333 ESQLSFEKTVSRLPKSVDGNISW--HNADNSIEPLSWLV-GSDVLVVDPPRKGLDSSLVH 389
+ F +V P + + + NA + I S L+ S VLVVDPPRKGLDS +V
Sbjct: 524 NNAKCFYDSVKTFPDHIQSRLDYKRKNASDMIATESTLIQKSQVLVVDPPRKGLDSEVVD 583
Query: 390 ALQSIG 395
L + G
Sbjct: 584 YLCNTG 589
>gi|422846976|ref|ZP_16893659.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK72]
gi|325687169|gb|EGD29191.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK72]
Length = 464
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 86/327 (26%), Positives = 153/327 (46%), Gaps = 42/327 (12%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + G +++ +H+++ I P I+ + R ++ +++P
Sbjct: 138 GYRNKAQVPVRRVNGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKP 197
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R +L + +G++ + LV P ++E L E
Sbjct: 198 YDEQEKTGLIR-----------NLVVRRGHYSGEIMLILVTTR-----PKIFRVEQLME- 240
Query: 219 LWRNGGSRSREHY--IHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
R E + I S+ N N IFG WR L G+ + + G D ++ +
Sbjct: 241 -------RLTEAFPAIKSIMQNINDQPGNAIFGKDWRTLYGQDYITDRMLGNDFQISGPA 293
Query: 277 FGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q NT + L + + A V D Y+G G IGLS+ A+ ++V VE+ E+
Sbjct: 294 FYQVNTEMAEKLYQTAIDFSELTADDVVLDAYSGIGTIGLSV--AKHVKAVYGVEVIPEA 351
Query: 335 QLSFEKTVSRLPKSVDG--NISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVH 389
+ +K +V+G N S+ A +WL + +DV++VDPPRKGL S +
Sbjct: 352 VENSQKNA-----AVNGITNASYVCAPAEEAIQNWLKEGIQADVILVDPPRKGLTESFIK 406
Query: 390 ALQSIGSAERKAKSLSESSSSMVKEEK 416
A S+ +K +S + ++M ++ K
Sbjct: 407 A--SVSMEPKKITYISCNVATMARDIK 431
>gi|255523417|ref|ZP_05390386.1| RNA methyltransferase, TrmA family [Clostridium carboxidivorans P7]
gi|255512875|gb|EET89146.1| RNA methyltransferase, TrmA family [Clostridium carboxidivorans P7]
Length = 458
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 87/369 (23%), Positives = 162/369 (43%), Gaps = 66/369 (17%)
Query: 54 CPHFQSCSGCT---HEFNLHRPIIVDEATDFFKSIGLLDFT----FDSCRL---YGWRCR 103
C ++ C GC + + D + IG L + D+ + Y +R +
Sbjct: 77 CSIYKRCGGCQLQHYSYQAQLDFKKQRVKDCIERIGKLKISEVNLHDTIGMNDPYRYRNK 136
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
+L V + IG Y + TH ++++ C H + ++L++ +K+ N++ Y+E
Sbjct: 137 VQLPVGEKNGEVNIGFYAQRTHEIINMDTCNIQHEAADKVLKLIKSWMKKYNIKSYNEQL 196
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNG 223
TG +R++ + + ++ +V + +V +R+ + P+ E L E L
Sbjct: 197 HTGSIRHIMV-----------RKAFKTNEVMVVVV--TRSNELPHK---EELVEMLL--- 237
Query: 224 GSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTR 283
S+E+ I S+ N + NVI G L G+ + + +G +++P SF Q N
Sbjct: 238 --ESKEN-IVSIIQNVNSKKTNVILGIECITLWGKDNISDYIGDFKFNISPLSFFQVNPV 294
Query: 284 AFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
++L K +Y +V D Y G G I L L ++K + V +EI
Sbjct: 295 QTEVLYNKALEYASLTGNETVFDAYCGTGTISLFL--SQKSKKVYGIEI----------- 341
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWLVG---------------SDVLVVDPPRKGLDSS 386
+P++++ N + N+I ++VG +DV+VVDPPRKG + S
Sbjct: 342 ---IPQAIE-NAKINAKQNNINNAEFIVGESEKIIPELIKKGIKADVVVVDPPRKGCEKS 397
Query: 387 LVHALQSIG 395
L+ A+ +
Sbjct: 398 LLEAIAQMA 406
>gi|110803163|ref|YP_697677.1| RNA methyltransferase [Clostridium perfringens SM101]
gi|110683664|gb|ABG87034.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens SM101]
Length = 455
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 93/374 (24%), Positives = 160/374 (42%), Gaps = 69/374 (18%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDFTFDSCRL-----YGWRCRAK 105
C ++ C GC + ++ + D D IG LD + L + +R + +
Sbjct: 73 CAIYKRCGGCKLQHASYKAQLDFKWDRVKDCVSKIGKLDPSIVKYPLGMEEPWRYRNKVQ 132
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED--- 162
L + + IG + +H+++D+ C + V+L R+ I++ N+ PY+ D
Sbjct: 133 LPIGLINGEVKIGFFAPRSHDIIDMESCLIQDEIGDKVVKLTREWIEKFNIRPYNVDGEY 192
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
D G +R++ + + +V + LV N N P+ E + + +N
Sbjct: 193 DEKGIVRHIMI-----------RRGFTTNEVMVVLVTNGEN--LPHK---EEFVDLMVKN 236
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
I SV N + NVI G + L GE + +G +++P SF Q N
Sbjct: 237 IPG------IKSVIQNINSKKTNVILGLESKTLWGEDTISDYIGDFRFNISPLSFFQVNP 290
Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
++L K +Y + V D Y G G I L L ++K + V VEI
Sbjct: 291 TQTEVLYGKALEYANLTGNEEVFDAYCGTGTITLFL--SQKAKKVYGVEI---------- 338
Query: 341 TVSRLPKSVDGNISWHNA-DNSIEPLSWLVG---------------SDVLVVDPPRKGLD 384
+P+++D +W NA +N +E + + VG +DV+VVDPPRKG D
Sbjct: 339 ----IPQAIDN--AWINAKENKVENVEFFVGESEVVIPDLINKGVKADVVVVDPPRKGCD 392
Query: 385 SSLVHALQSIGSAE 398
L+ A+ +I + +
Sbjct: 393 KKLLDAITNIDAKK 406
>gi|443633743|ref|ZP_21117920.1| putative RNA methyltransferase [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|443346537|gb|ELS60597.1| putative RNA methyltransferase [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
Length = 460
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 85/355 (23%), Positives = 154/355 (43%), Gaps = 46/355 (12%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDF-------TFDSCRLYGWRCR 103
CP ++ C GC + + ++ + D + IG LD T + +R +
Sbjct: 77 CPIYKQCGGCQLQHMTYEGQLLFKQKQVKDVLERIGKLDLSNVTVHPTLGMEDPWNYRNK 136
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A++ V + G YQ+ +H+++D+ C + + AV+ ++ + V+ Y+E+
Sbjct: 137 AQVPVGEREGGLVAGFYQQRSHDIIDMSACLIQQSKNDEAVQAVKDICAKYGVKAYNEER 196
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL--ESLAEFLWR 221
G LR++ + RY ++ +V+ +R P+ K+ + A F
Sbjct: 197 HKGWLRHIMV-------------RYGVVTGEMMIVFITRTNDFPHKAKIIEDITAAF--- 240
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ S+ N + NVIFGN + GE ++ +G + +++ SF Q N
Sbjct: 241 --------PHVKSIVQNINPNKTNVIFGNETNVIWGEEYIYDLIGDVKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L K +Y +V D Y G G I L L A++ + V VEI E+ +
Sbjct: 293 PEQTKVLYDKALEYAELQGEETVIDAYCGIGTISLFL--AKQAKKVYGVEIVPEA-IEDA 349
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
K + L + + A+ I W + +D LVVDPPRKG D +L+ +
Sbjct: 350 KRNAELNGITNAEFAVGEAETVIP--KWYEEGITADTLVVDPPRKGCDEALLRTI 402
>gi|421858782|ref|ZP_16291036.1| methyltransferase [Paenibacillus popilliae ATCC 14706]
gi|410831635|dbj|GAC41473.1| methyltransferase [Paenibacillus popilliae ATCC 14706]
Length = 470
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 97/360 (26%), Positives = 163/360 (45%), Gaps = 55/360 (15%)
Query: 54 CPHFQSCSGC-----THEFNLH-RPIIVDEATDFFKSIGLLDFTFDSCRLYG------WR 101
CP ++ C GC +E L + +V EA F + G+ + G +R
Sbjct: 79 CPVYERCGGCQLQHLAYEGQLRAKEDLVREA--FRRYAGVEGQALPLKPMLGIDDPWHYR 136
Query: 102 CRAKLAVRGTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYD 160
+A+L + ++ GLY+ +H +VDI C H RIN +E ++ ++ L++ PYD
Sbjct: 137 NKAQLQLGARQDGSIVAGLYEAQSHQLVDITGCTIQHDRINQTLEEVKVILERLHIAPYD 196
Query: 161 EDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLW 220
R+G +R +L +++ +Q+TLV S E P SD+L ++E L
Sbjct: 197 AKRRSGVIR-----------TLIVRTGFQSDDLQLTLV--SGTETLPKSDQL--VSELLR 241
Query: 221 RNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQA 280
+ H N T +++FG++ R L G+ +++G + SL+P +F Q
Sbjct: 242 AVPALTTIAH-------NINTRKTSLVFGDKTRILWGKPTMEDSLGDVKFSLSPRAFFQL 294
Query: 281 NTRAFDILLRKLQKYVPYGAS------VTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
N + KL + V A+ V D Y G G IGL LA V+ +EI E+
Sbjct: 295 NPQQ----TLKLYEAVRVAAALSGRERVVDAYCGTGTIGLWLAP--YAAEVRGIEIIPEA 348
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHAL 391
+ + R ++ N +++ + W+ DV+VVDPPR G D L+ A+
Sbjct: 349 VDNARQNAERSGRT---NAAFYAGEAEALLPRWVKDGYRPDVIVVDPPRTGCDERLLRAV 405
>gi|422870640|ref|ZP_16917133.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK1087]
gi|328946582|gb|EGG40721.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK1087]
Length = 465
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 86/327 (26%), Positives = 153/327 (46%), Gaps = 42/327 (12%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + G +++ +H+++ I P I+ + R ++ +++P
Sbjct: 138 GYRNKAQVPVRRVNGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKP 197
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R +L + +G++ + LV P ++E L E
Sbjct: 198 YDEQEKTGLIR-----------NLVVRRGHYSGEIMLILVTTR-----PKIFRVEQLME- 240
Query: 219 LWRNGGSRSREHY--IHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
R E + I S+ N N IFG WR L G+ + + G D ++ +
Sbjct: 241 -------RLTEAFPAIKSIMQNINDQPGNAIFGKDWRTLYGQDYITDRMLGNDFQISGPA 293
Query: 277 FGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q NT + L + + A V D Y+G G IGLS+ A+ ++V VE+ E+
Sbjct: 294 FYQVNTEMAEKLYQTAIDFSELTADDVVLDAYSGIGTIGLSV--AKHVKAVYGVEVIPEA 351
Query: 335 QLSFEKTVSRLPKSVDG--NISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVH 389
+ +K +V+G N S+ A +WL + +DV++VDPPRKGL S +
Sbjct: 352 VENSQKNA-----AVNGITNASYVCAPAEEAIQNWLKEGIQADVILVDPPRKGLTESFIK 406
Query: 390 ALQSIGSAERKAKSLSESSSSMVKEEK 416
A S+ +K +S + ++M ++ K
Sbjct: 407 A--SVSMEPKKITYISCNVATMARDIK 431
>gi|217964101|ref|YP_002349779.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
HCC23]
gi|290893407|ref|ZP_06556392.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
gi|386008521|ref|YP_005926799.1| RNA methyltransferase, TrmA/RumA/YefA-family [Listeria
monocytogenes L99]
gi|386027126|ref|YP_005947902.1| RNA methyltransferase [Listeria monocytogenes M7]
gi|404408192|ref|YP_006690907.1| TrmA/RumA/YefA-family RNA methyltransferase [Listeria monocytogenes
SLCC2376]
gi|217333371|gb|ACK39165.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
HCC23]
gi|290557058|gb|EFD90587.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
gi|307571331|emb|CAR84510.1| RNA methyltransferase, TrmA/RumA/YefA-family [Listeria
monocytogenes L99]
gi|336023707|gb|AEH92844.1| RNA methyltransferase [Listeria monocytogenes M7]
gi|404242341|emb|CBY63741.1| RNA methyltransferase, TrmA/RumA/YefA-family [Listeria
monocytogenes SLCC2376]
Length = 453
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 87/353 (24%), Positives = 158/353 (44%), Gaps = 40/353 (11%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKL 106
C + C GC+ + ++ ++ + K IG L+ T + +R ++++
Sbjct: 76 CAVYSKCGGCSLQHLSYDGQLAFKRNQVEETMKRIGKLNVDVPETLGMENPWRYRNKSQV 135
Query: 107 AVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTG 166
V + G YQ+ +H ++D+ C H+ + + AV+ R+ + + EPYDE G
Sbjct: 136 PVGFVNGKLTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDEKTGKG 195
Query: 167 DLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRNGGS 225
D+R++ R+ + Q+ LV + E+ P +++ + L E L
Sbjct: 196 DIRHIMT-------------RFAHTTGQLMLVLVTTKERMPFKNEIVQDLVEQLE----- 237
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
+ S+ N NVIFG+R + L G+ + + GI +++ SF Q N
Sbjct: 238 ------LTSIVQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPLQT 291
Query: 286 DILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
++L ++ +V D Y G G I L L A+K + V VEI ++ + + +
Sbjct: 292 EVLYQQAIDAAELTGEETVIDAYCGIGSISLCL--AKKAKHVYGVEIVDQA-IQDARANA 348
Query: 344 RLPKSVDGNISWHNADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHALQSI 394
L + + A+ I P + G +DVLVVDPPRKG D L+ + ++
Sbjct: 349 ELNELTNTTFETGKAEEVI-PAWYKAGIEADVLVVDPPRKGCDEKLLETILAM 400
>gi|422858137|ref|ZP_16904787.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK1057]
gi|327461108|gb|EGF07441.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK1057]
Length = 464
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 85/327 (25%), Positives = 153/327 (46%), Gaps = 42/327 (12%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + G +++ +H+++ I P I+ + R ++ +++P
Sbjct: 138 GYRNKAQVPVRRVNGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKP 197
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R +L + +G++ + LV P ++E L E
Sbjct: 198 YDEQEKTGLIR-----------NLVVRRGHYSGEIMVILVTTR-----PKIFRVEQLME- 240
Query: 219 LWRNGGSRSREHY--IHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
R E + I S+ N N IFG WR L G+ + + G D ++ +
Sbjct: 241 -------RLTEAFPAIKSIMQNINDQPGNAIFGKDWRTLYGQDYITDQMLGNDFQISGPA 293
Query: 277 FGQANTRAFDILLRKLQKY--VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q NT + L + + + V D Y+G G IGLS+ A++ + V VE+ E+
Sbjct: 294 FYQVNTEMAEKLYQTAIDFSELTTDDVVLDAYSGIGTIGLSV--AKQVKEVYGVEVIPEA 351
Query: 335 QLSFEKTVSRLPKSVDG--NISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVH 389
+ SR +++G N S+ A +WL + +DV++VDPPRKGL S +
Sbjct: 352 VEN-----SRKNAAINGITNASYVCAPAEEAIQNWLKEGIQADVILVDPPRKGLTESFIK 406
Query: 390 ALQSIGSAERKAKSLSESSSSMVKEEK 416
A S+ +K +S + ++M ++ K
Sbjct: 407 A--SVSMEPKKITYISCNVATMARDIK 431
>gi|422854537|ref|ZP_16901201.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK160]
gi|325696032|gb|EGD37923.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK160]
Length = 465
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/323 (26%), Positives = 151/323 (46%), Gaps = 34/323 (10%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + G +++ +H+++ I P I+ + R ++ +++P
Sbjct: 138 GYRNKAQVPVRRVNGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKP 197
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R +L + G++ + LV P ++E L E
Sbjct: 198 YDEQEKTGLIR-----------NLVVRRGHYLGEIMVILVTTR-----PKIFRVERLMEH 241
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
L + I S+ N N IFG WR L G+ + + G D +A +F
Sbjct: 242 LTEAFPA------IKSIMQNINDQPGNAIFGKDWRTLYGQDYITDQMLGNDFQIAAPAFY 295
Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q NT + L + + A V D Y+G G IGLS+ A++ + V VE+ E+
Sbjct: 296 QVNTEMAEKLYQTAIDFSELTADDVVLDAYSGIGTIGLSV--AKQVKQVYGVEVIPEAVE 353
Query: 337 SFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQS 393
+ K + + + + A+ +I+ +WL + +DV++VDPPRKGL S + A S
Sbjct: 354 NSRKN-AEINDITNASYVCAPAEEAIQ--NWLKEGIQADVILVDPPRKGLTESFIKA--S 408
Query: 394 IGSAERKAKSLSESSSSMVKEEK 416
I +K +S + ++M ++ K
Sbjct: 409 ISMEPKKITYISCNVATMSRDIK 431
>gi|310827128|ref|YP_003959485.1| RNA methyltransferase [Eubacterium limosum KIST612]
gi|308738862|gb|ADO36522.1| RNA methyltransferase [Eubacterium limosum KIST612]
Length = 446
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 92/355 (25%), Positives = 151/355 (42%), Gaps = 47/355 (13%)
Query: 54 CPHFQSCSGCTH---EFNLHRPIIVDEATDFFKSIG-LLDFTFDSC----RLYGWRCRAK 105
CP+F C GC +++ I TD + IG + D ++ Y +R +A+
Sbjct: 71 CPYFGRCGGCQLLQVQYDAQLAIKRKIVTDALERIGGIKDVPVNAVIGMETPYRYRNKAQ 130
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
+ G +G + + +H +V I C +E +K+ E YDE T
Sbjct: 131 FKISGKG----VGFFAKRSHQIVPIEDCLTQPESCVQVIETFNALLKDGCFELYDEQQHT 186
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDK-LESLAEFLWRNGG 224
G LR + G+ I +V N + K + DK L+++ E
Sbjct: 187 GFLRGI------------IQRTNEQGENMIVIVGNGK--KLKHKDKILQAITE------- 225
Query: 225 SRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRA 284
R + SV+ N T+ N + G LLG E +G + ++P+SF Q NTR
Sbjct: 226 ---RIPEVRSVYLNVNTTRGNAVLGRENHLLLGTPQIEERIGDLSFLISPNSFFQVNTRQ 282
Query: 285 FDILLRKLQKYVPYGASVT--DLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTV 342
+L +++ + T DLY G G IGL L AR+ V +EI + + L ++
Sbjct: 283 TKVLYDLVKRMATLTGAETLFDLYCGTGTIGLYL--AREAARVYGIEIVENAVLDAQENA 340
Query: 343 SRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
R + NI + + E V DV+V+DPPRKG D +L+ ++++
Sbjct: 341 ER---NQIKNIRFIQGKSETEAPKLAEEGVHPDVIVLDPPRKGCDPALLEMIENL 392
>gi|182624472|ref|ZP_02952255.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens D str. JGS1721]
gi|177910280|gb|EDT72661.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens D str. JGS1721]
Length = 455
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 93/374 (24%), Positives = 161/374 (43%), Gaps = 69/374 (18%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDFTFDSCRL-----YGWRCRAK 105
C ++ C GC + ++ + D D IG LD + L + +R + +
Sbjct: 73 CTIYKRCGGCKLQHASYKAQLDFKWDRVKDCVSKIGKLDPSIVKYPLGMEEPWRYRNKVQ 132
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED--- 162
L + + IG + +H+++D+ C + V+L R+ I++ N+ PY+ D
Sbjct: 133 LPIGLINGEVKIGFFAPRSHDIIDMESCLIQDEIGDKVVKLTRKWIEKFNIRPYNVDGEY 192
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
D G +R++ + + +V + LV N EK P+ E + + +N
Sbjct: 193 DEKGIVRHIMI-----------RRGFTTNEVMVVLVTNG--EKLPHK---EEFVDLMVKN 236
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
I SV N + NVI G + L GE + +G +++P SF Q N
Sbjct: 237 IPG------IKSVIQNINSKKTNVILGLESKTLWGEDTISDYIGDFRFNISPLSFFQVNP 290
Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
++L K +Y + V D Y G G I L L ++K + V VEI
Sbjct: 291 TQTEVLYGKALEYANLTGNEEVFDAYCGTGTITLFL--SQKAKKVYGVEI---------- 338
Query: 341 TVSRLPKSVDGNISWHNA-DNSIEPLSWLVG---------------SDVLVVDPPRKGLD 384
+P+++D +W NA +N ++ + + VG +DV+VVDPPRKG D
Sbjct: 339 ----IPQAIDN--AWINAKENKVDNVEFFVGESEVVIPDLINKGVKADVVVVDPPRKGCD 392
Query: 385 SSLVHALQSIGSAE 398
L+ A+ +I + +
Sbjct: 393 KKLLDAITNIDAKK 406
>gi|392962789|ref|ZP_10328218.1| RNA methyltransferase, TrmA family [Pelosinus fermentans DSM 17108]
gi|421053147|ref|ZP_15516129.1| RNA methyltransferase, TrmA family [Pelosinus fermentans B4]
gi|421066327|ref|ZP_15527949.1| RNA methyltransferase, TrmA family [Pelosinus fermentans A12]
gi|421073867|ref|ZP_15534916.1| RNA methyltransferase, TrmA family [Pelosinus fermentans A11]
gi|392442188|gb|EIW19778.1| RNA methyltransferase, TrmA family [Pelosinus fermentans B4]
gi|392443856|gb|EIW21365.1| RNA methyltransferase, TrmA family [Pelosinus fermentans A11]
gi|392452030|gb|EIW28999.1| RNA methyltransferase, TrmA family [Pelosinus fermentans DSM 17108]
gi|392456885|gb|EIW33615.1| RNA methyltransferase, TrmA family [Pelosinus fermentans A12]
Length = 460
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 96/389 (24%), Positives = 156/389 (40%), Gaps = 74/389 (19%)
Query: 38 LDPPAANLPSLTCALQCPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF 90
L P AA C +C + C GC + L R ++D T K ++
Sbjct: 67 LKPIAAR-----CQPRCSIYYDCGGCQLQHVAYNEQLILKRQTVIDAVTRIGKINDVIIH 121
Query: 91 -TFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQ 149
T + + +R + + + + +G + +GTHN+++ HC H N + L++
Sbjct: 122 PTIGAENSWYYRNKMQFPIGTVNGKVAVGCFAQGTHNIINTEHCYIQHEANNQVAQALQE 181
Query: 150 GIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNS 209
+ EL + YDE G +R+V V T ++ +V + + P+
Sbjct: 182 IVTELGISTYDERTGQGTMRHVLGRVGTATD-------------EVMVVLVTATSELPHK 228
Query: 210 DKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGID 269
D++ +A R R + SV N ++ NVI GNR L GE + +G
Sbjct: 229 DRI--IAHL-------RQRVPKLVSVIQNINSNKTNVILGNRTITLWGENYITDTLGEFT 279
Query: 270 ISLAPSSFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKC 327
++ SF Q NT+ ++L K +Y +V D Y G G I L L AR + V
Sbjct: 280 FHISARSFFQVNTKQAEVLYNKAVEYAGLSGEETVIDAYCGTGTITLFL--ARHAKKVYG 337
Query: 328 VEINKESQLSFEKTVSRLPKSVDGNISWHNAD-NSIEPLSWLVGS--------------- 371
+EI P D + HNA N + + ++VG
Sbjct: 338 IEIVA-------------PAIRD---AQHNAQMNQVSNVEFIVGDAVDSMPKMFKEGIRP 381
Query: 372 DVLVVDPPRKGLDSSLVHALQSIGSAERK 400
V+VVDPPR G D + L++ + E K
Sbjct: 382 QVIVVDPPRAGCDKLV---LETFAAMEAK 407
>gi|187776694|ref|ZP_02993167.1| hypothetical protein CLOSPO_00209 [Clostridium sporogenes ATCC
15579]
gi|187775353|gb|EDU39155.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sporogenes
ATCC 15579]
Length = 459
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 85/370 (22%), Positives = 153/370 (41%), Gaps = 69/370 (18%)
Query: 54 CPHFQSCSGCT---HEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRL---------YGWR 101
CP ++ C GC + + D K IG LD D ++ Y +R
Sbjct: 77 CPIYKQCGGCQVQHYSYKAQLDFKKRRVIDSLKRIGKLDI--DKIKIEDTIGMENPYRYR 134
Query: 102 CRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDE 161
+ ++ VR IG Y+ TH V D+ C + + ++++R + + N+ Y+E
Sbjct: 135 NKIQMPVRFEKDEIKIGFYRPRTHEVADVKECFIQDEQADKIIQIIRNWMGKYNISAYNE 194
Query: 162 DDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
+ G +R++ + + ++N ++ + +V N E + ++ + + L
Sbjct: 195 EIGKGFIRHIMV-----------RKAFKNKELMLVIVTNKEKEIPHKEELIDEVIKELPN 243
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
+ S+ N + NVI G + L G+ + + +++P SF Q N
Sbjct: 244 ----------MKSIIQNVNSKKTNVILGEKCITLWGKDTITDYIDKFKFNISPLSFFQVN 293
Query: 282 TRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+IL +K ++ V D Y G G I L L ++K + V VEI KE
Sbjct: 294 PIQTEILYKKALEFADLKGEEIVFDAYCGTGTISLFL--SQKAKKVYGVEIIKE------ 345
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWLVG---------------SDVLVVDPPRKGLD 384
++D N + +N I+ + VG +DV+VVDPPRKG +
Sbjct: 346 --------AID-NAKDNAKENKIDNAEFFVGKSEEVIPDLINKGIKADVIVVDPPRKGCE 396
Query: 385 SSLVHALQSI 394
+L+ A+ I
Sbjct: 397 KTLLEAIADI 406
>gi|421076571|ref|ZP_15537553.1| RNA methyltransferase, TrmA family [Pelosinus fermentans JBW45]
gi|392525183|gb|EIW48327.1| RNA methyltransferase, TrmA family [Pelosinus fermentans JBW45]
Length = 459
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 98/383 (25%), Positives = 151/383 (39%), Gaps = 71/383 (18%)
Query: 38 LDPPAANLPSLTCALQCPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF 90
L P AA C +C + C GC + L R ++D T K ++
Sbjct: 67 LKPIAAR-----CQPRCSIYYDCGGCQLQHVAYNEQLILKRQTVIDAVTRIGKINDVIIH 121
Query: 91 -TFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQ 149
T + + +R + + + + IG + +GTHN+++ HC H N + L++
Sbjct: 122 PTIGAEDSWYYRNKMQFPIGTVNGKVAIGCFAQGTHNIINTEHCYIQHEANNLVAQALQE 181
Query: 150 GIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNS 209
+ EL + YDE G +R+V V T +V + LV +P
Sbjct: 182 IVTELGISTYDERTGRGIMRHVLGRVGT-----------ATDEVMVVLV-----TATPEL 225
Query: 210 DKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGID 269
E + L R R + SV N ++ NVI GNR R L GE + +G
Sbjct: 226 PHRERIIAHL------RQRVPNLVSVIQNINSNKTNVILGNRTRTLWGENYITDTLGEFT 279
Query: 270 ISLAPSSFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKC 327
++ SF Q NT+ ++L K +Y +V D Y G G I L L AR + V
Sbjct: 280 FHISARSFFQVNTKQAEVLYNKAVEYAGLSGEETVIDAYCGTGTITLFL--ARHAKKVYG 337
Query: 328 VEINKESQLSFEKTVSRLPKSVDGNISWHNAD-NSIEPLSWLVGS--------------- 371
+EI P D + HNA N I + ++VG
Sbjct: 338 IEIVA-------------PAIRD---AQHNAQMNQISNVEFIVGDAIDSMPKMFKEGIRP 381
Query: 372 DVLVVDPPRKGLDSSLVHALQSI 394
V+VVDPPR G D ++ ++
Sbjct: 382 QVIVVDPPRAGCDKLVLETFAAM 404
>gi|366053486|ref|ZP_09451208.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus suebicus KCTC
3549]
Length = 471
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 139/335 (41%), Gaps = 52/335 (15%)
Query: 74 IVDEATDFFKSIGLLDFTFDSC----RLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVD 129
++ +A D FK G +T Y +R +A+ +R GLYQ G+H++VD
Sbjct: 115 LIRQALDKFKPTGYHGYTIHPTLGMDMPYEYRNKAQFQIRMIDGHVAAGLYQSGSHDLVD 174
Query: 130 IPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYR 189
+ C P + + + I+EL + YDE + G ++ V + V
Sbjct: 175 LESCSVQIPVTMTVMRDMVKLIEELEIPVYDEKTKAGIIKTVVVRVAD-----------G 223
Query: 190 NGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFG 249
G+VQ+T++ N+ K P+ +L E R + SV N T+ +++G
Sbjct: 224 TGEVQLTIITNT--PKLPHKHQLLEQIE---------QRLPEVTSVMQNINPGTSPLVWG 272
Query: 250 NRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVP--YGASVTDLYA 307
+ HL G E +GG+ L+ +F Q N +L + K + ++ D YA
Sbjct: 273 DETIHLAGNDAITEMIGGLKFRLSARAFLQLNPEQTKVLYEQTAKALKPSRKDTLIDAYA 332
Query: 308 GAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS- 366
G G IGLS A N+ Q+ + + N +N DN+ +
Sbjct: 333 GIGTIGLSFA-------------NQVDQVLGMEVIPDAVADAKYNAEQNNIDNAQYEVGT 379
Query: 367 -------WL---VGSDVLVVDPPRKGLDSSLVHAL 391
WL V D LVVDPPR GLD L+ +
Sbjct: 380 AEKVMPRWLNDGVNFDALVVDPPRSGLDGGLIKEI 414
>gi|237809371|ref|YP_002893811.1| RNA methyltransferase, TrmA family [Tolumonas auensis DSM 9187]
gi|237501632|gb|ACQ94225.1| RNA methyltransferase, TrmA family [Tolumonas auensis DSM 9187]
Length = 447
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 132/302 (43%), Gaps = 35/302 (11%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A AVR + P IG Y++ +H V+DI C HP+ + +RQ +K+L++
Sbjct: 122 AFRNKAVYAVRSENGEPQIGFYRKNSHQVIDIAACPVQHPQTTEIIAAIRQWMKDLHIAG 181
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE + G LRYV + ++ + LV +D+L AE
Sbjct: 182 YDEANHAGCLRYVMI-----------RHGFKTNACMVVLV--------TLTDELPGEAEL 222
Query: 219 L--WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
L GG+ I SV N N I G++ R G + + G+ S++ S
Sbjct: 223 LQYLTAGGN------IDSVIHNINPERVNRILGSQQRVCYGAEAIEDELHGLTFSISAHS 276
Query: 277 FGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q N + D L ++ +V D+Y G G I L LA + K + I S
Sbjct: 277 FYQVNPQQTDQLYATALQFAELKGDETVVDIYCGIGTISLYLAQ----EASKVIGIEVVS 332
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHALQ 392
Q + + +D + + P + G +DV+VVDPPRKG + ++++ +
Sbjct: 333 QAIEDARSNAKRNQLDNTEFYVGKAEEVVPALYAQGLRADVVVVDPPRKGCELAVLNTMA 392
Query: 393 SI 394
++
Sbjct: 393 AM 394
>gi|206974209|ref|ZP_03235126.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
H3081.97]
gi|423375582|ref|ZP_17352918.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
AND1407]
gi|206747449|gb|EDZ58839.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
H3081.97]
gi|401091846|gb|EJP99985.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
AND1407]
Length = 459
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 86/358 (24%), Positives = 157/358 (43%), Gaps = 47/358 (13%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRL---YGWRCR 103
CP ++ C GC + N R I+V +A + + + L + + + + +R +
Sbjct: 80 CPVYEECGGCQLQHLDYKEQLNQKRDIVV-QAFEKYMNNSLEEKIRPTLGMENPWHYRNK 138
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
++L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E
Sbjct: 139 SQLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKK 198
Query: 164 RTGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
+ G +R + + AV T G+VQ+TL+ + E+ PN ++ + +
Sbjct: 199 QKGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQFITEVQ---- 239
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
+ + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 240 -----KQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLN 294
Query: 282 TRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L + +K + + D Y G G IGL L A V+ +++ E+
Sbjct: 295 PEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIADAR 352
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
K R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 353 KNAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|430756108|ref|YP_007210486.1| RNA methyltransferase YfjO [Bacillus subtilis subsp. subtilis str.
BSP1]
gi|430020628|gb|AGA21234.1| putative RNA methyltransferase YfjO [Bacillus subtilis subsp.
subtilis str. BSP1]
Length = 466
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/369 (23%), Positives = 156/369 (42%), Gaps = 67/369 (18%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIV---DEATDFFKSIGLLDFTFDSCRLYGWRCR 103
CP ++ C GC + + R I++ + T F + T + +R +
Sbjct: 82 CPVYEQCGGCQLQHLAYSQQLREKRDIVIQSLERHTKFKVENMEIKETIGMDNPWNYRNK 141
Query: 104 AKLAV-RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
++ + R S S + GLY +H++V I C HP N ++R+ +++ NV Y+E
Sbjct: 142 SQFQIGRSQSGSIIAGLYGLDSHDIVPIKDCIVQHPATNKTTGIVRRILEDFNVSVYNER 201
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
R GD+R + V + G+VQ+ LV + E P+ +++ +
Sbjct: 202 KRKGDVRTIVTRVG-----------FETGEVQVVLV--TAKETLPHKEEIVKAIQ----- 243
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
R + S+ N + +VIFG + + L G+T E +G + L+ +F Q N
Sbjct: 244 ----KRLPEVKSIIQNVNGAKTSVIFGEKTKPLAGKTVIQEVLGDVSFELSARAFFQLNP 299
Query: 283 RAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
L +++K V D Y G G IG+ +A K V+ +++ KES +K
Sbjct: 300 EQTVKLYDEVKKAAQLTGKEKVVDAYCGVGTIGMWVADGAK--EVRGMDVIKESIDDAKK 357
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPPRKGLDS 385
N H N+ +++ G+ DV++VDPPR G DS
Sbjct: 358 -----------NAKKHGMANA----TYVTGTAEHWLPKWTKEGFRPDVVIVDPPRTGCDS 402
Query: 386 SLVHALQSI 394
+ + ++ +
Sbjct: 403 TFLDTIKKV 411
>gi|300853527|ref|YP_003778511.1| rRNA (uracil-5-)-methyltransferase [Clostridium ljungdahlii DSM
13528]
gi|300433642|gb|ADK13409.1| rRNA (uracil-5-)-methyltransferase [Clostridium ljungdahlii DSM
13528]
Length = 476
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 139/304 (45%), Gaps = 36/304 (11%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
Y +R + +L V + IG Y + +H ++D+ C + V+ +R I++ N+E
Sbjct: 147 YRYRNKVQLPVGKCNQKINIGFYAKASHEIIDMESCLIQDETSDKIVKFMRDWIEKYNIE 206
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
PYDE G ++++ M + T +I LV + E P+ + L E
Sbjct: 207 PYDEKTGRGTIKHI-MTRKGFATG------------EIMLVIVTFTENLPHK---KELVE 250
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
+ +N + S+ N + NVI G + +L G+ + +G +++P SF
Sbjct: 251 LMCKNISG------VKSIVHNINNNKTNVILGKKCVNLWGQDTIRDAIGNFKFNISPLSF 304
Query: 278 GQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q N ++L K +Y + V D Y G G I L L ++K + V VEI E+
Sbjct: 305 FQVNPIQTEVLYSKALEYAGLSGNEVVFDAYCGTGTISLFL--SQKSKKVYGVEIIDEAI 362
Query: 336 LSFEKTVSRLPKSVDG--NISWHNADNSI---EPLSWLVGSDVLVVDPPRKGLDSSLVHA 390
+ +R+ +G N+ + + + E +S + +DV+VVDPPRKG D L+ A
Sbjct: 363 KN-----ARINAEQNGVNNVEFITGKSEVVIPELISKGIKADVVVVDPPRKGCDMGLLKA 417
Query: 391 LQSI 394
+ +
Sbjct: 418 IADM 421
>gi|260887170|ref|ZP_05898433.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sputigena
ATCC 35185]
gi|260863232|gb|EEX77732.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sputigena
ATCC 35185]
Length = 466
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 93/367 (25%), Positives = 152/367 (41%), Gaps = 67/367 (18%)
Query: 54 CPHFQSCSGC-----THEFNLH--RPIIVD--EATDFFKSIGLLDFTFDSCRLYGWRCRA 104
CP + SC GC ++ LH R +VD E I +L + + +R +
Sbjct: 85 CPIYDSCGGCQLQHLSYGGQLHWKRQQVVDAVERIGGLSGIEVLP-VLGAKEPWLYRNKM 143
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+ V +IG + +G+H+++D C+ N V ++R+ ++ L++ YDED
Sbjct: 144 QFPVGKKRGKTVIGCFAKGSHDIIDTRDCRIQKDGNNTIVNVMREIVERLHIPVYDEDRH 203
Query: 165 TGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGG 224
TG LR++ + NG+ + LV +++ P + ++ L
Sbjct: 204 TGVLRHIVGRIG------------ENGEAMVVLVTATKD--LPKAKEITRLL-------- 241
Query: 225 SRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRA 284
R R + SV N QT NNVI G + L G+ + +G + S++ SF Q NT
Sbjct: 242 -RERVPNLKSVQQNIQTYRNNVILGRETKLLWGKPTIPDRIGRLRFSISARSFFQVNTEQ 300
Query: 285 FDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTV 342
+L K +Y +V D Y G G I L L A+K V +EI K + +K
Sbjct: 301 AAVLYEKALEYADLSGKETVIDAYCGTGTITLFL--AQKAHRVYGIEIVKPAIEDAKKNA 358
Query: 343 SRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPPRKGLDSSL 387
DN I+ ++LVG V+VVDPPR G ++
Sbjct: 359 R---------------DNHIKNAAFLVGDATELMPRLCHENIRPHVIVVDPPRAGCTETV 403
Query: 388 VHALQSI 394
+ +
Sbjct: 404 LKTFAGM 410
>gi|422409995|ref|ZP_16486956.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
FSL F2-208]
gi|313608260|gb|EFR84264.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
FSL F2-208]
Length = 453
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/353 (24%), Positives = 157/353 (44%), Gaps = 40/353 (11%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKL 106
C + C GC+ + ++ ++ + K IG L T + +R ++++
Sbjct: 76 CAVYSKCGGCSLQHLSYDGQLAFKRNQVEETMKRIGKLKVDVPETLGMENPWRYRNKSQV 135
Query: 107 AVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTG 166
V + G YQ+ +H ++D+ C H+ + + AV+ R+ + + EPYDE G
Sbjct: 136 PVGFVNGKLTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDEKTGKG 195
Query: 167 DLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRNGGS 225
D+R++ R+ + Q+ LV + E+ P +++ + L E L
Sbjct: 196 DIRHIMT-------------RFAHTTGQLMLVLVTTKERMPFKNEIVQDLVEQLE----- 237
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
+ S+ N NVIFG+R + L G+ + + GI +++ SF Q N
Sbjct: 238 ------LTSIVQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPLQT 291
Query: 286 DILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
++L ++ +V D Y G G I L L A+K + V VEI ++ + + +
Sbjct: 292 EVLYQQAIDAAELTGEETVIDAYCGIGSISLCL--AKKAKHVYGVEIVDQA-IQDARANA 348
Query: 344 RLPKSVDGNISWHNADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHALQSI 394
L + + A+ I P + G +DVLVVDPPRKG D L+ + ++
Sbjct: 349 ELNELTNTTFETGKAEEVI-PAWYKAGIEADVLVVDPPRKGCDEKLLETILAM 400
>gi|168212723|ref|ZP_02638348.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens CPE str. F4969]
gi|170715672|gb|EDT27854.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens CPE str. F4969]
Length = 455
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 93/374 (24%), Positives = 160/374 (42%), Gaps = 69/374 (18%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDFTFDSCRL-----YGWRCRAK 105
C ++ C GC + ++ + D D IG LD + L + +R + +
Sbjct: 73 CAIYKRCGGCKLQHASYKAQLDFKWDRVKDCVSKIGKLDPSIVKYPLGMENPWRYRNKVQ 132
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED--- 162
L + + IG + +H+++D+ C + V+L R+ I++ N+ PY+ D
Sbjct: 133 LPIGLINGEVKIGFFAPRSHDIIDMESCLIQDEIGDKVVKLTREWIEKFNIRPYNIDGEY 192
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
D G +R++ + + +V + LV N N P+ E + + +N
Sbjct: 193 DEKGIVRHIMI-----------RRGFTTNEVMVVLVTNGEN--LPHK---EEFVDLMVKN 236
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
I SV N + NVI G + L GE + +G +++P SF Q N
Sbjct: 237 IPG------IKSVIQNINSKKTNVILGLESKTLWGEDTISDYIGDFRFNISPLSFFQVNP 290
Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
++L K +Y + V D Y G G I L L ++K + V VEI
Sbjct: 291 IQTEVLYGKALEYANLTGNEEVFDAYCGTGTITLFL--SQKAKKVYGVEI---------- 338
Query: 341 TVSRLPKSVDGNISWHNA-DNSIEPLSWLVG---------------SDVLVVDPPRKGLD 384
+P+++D +W NA +N +E + + VG +DV+VVDPPRKG D
Sbjct: 339 ----IPQAIDN--AWINAKENKVENVEFFVGESEVVIPDLINKGVKADVVVVDPPRKGCD 392
Query: 385 SSLVHALQSIGSAE 398
L+ A+ +I + +
Sbjct: 393 KKLLDAITNIDAKK 406
>gi|330839061|ref|YP_004413641.1| RNA methyltransferase, TrmA family [Selenomonas sputigena ATCC
35185]
gi|329746825|gb|AEC00182.1| RNA methyltransferase, TrmA family [Selenomonas sputigena ATCC
35185]
Length = 458
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 93/367 (25%), Positives = 152/367 (41%), Gaps = 67/367 (18%)
Query: 54 CPHFQSCSGC-----THEFNLH--RPIIVD--EATDFFKSIGLLDFTFDSCRLYGWRCRA 104
CP + SC GC ++ LH R +VD E I +L + + +R +
Sbjct: 77 CPIYDSCGGCQLQHLSYGGQLHWKRQQVVDAVERIGGLSGIEVLP-VLGAKEPWLYRNKM 135
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+ V +IG + +G+H+++D C+ N V ++R+ ++ L++ YDED
Sbjct: 136 QFPVGKKRGKTVIGCFAKGSHDIIDTRDCRIQKDGNNTIVNVMREIVERLHIPVYDEDRH 195
Query: 165 TGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGG 224
TG LR++ + NG+ + LV +++ P + ++ L
Sbjct: 196 TGVLRHIVGRIG------------ENGEAMVVLVTATKD--LPKAKEITRLL-------- 233
Query: 225 SRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRA 284
R R + SV N QT NNVI G + L G+ + +G + S++ SF Q NT
Sbjct: 234 -RERVPNLKSVQQNIQTYRNNVILGRETKLLWGKPTIPDRIGRLRFSISARSFFQVNTEQ 292
Query: 285 FDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTV 342
+L K +Y +V D Y G G I L L A+K V +EI K + +K
Sbjct: 293 AAVLYEKALEYADLSGKETVIDAYCGTGTITLFL--AQKAHRVYGIEIVKPAIEDAKKNA 350
Query: 343 SRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPPRKGLDSSL 387
DN I+ ++LVG V+VVDPPR G ++
Sbjct: 351 R---------------DNHIKNAAFLVGDATELMPRLCHENIRPHVIVVDPPRAGCTETV 395
Query: 388 VHALQSI 394
+ +
Sbjct: 396 LKTFAGM 402
>gi|336115310|ref|YP_004570077.1| TrmA family RNA methyltransferase [Bacillus coagulans 2-6]
gi|335368740|gb|AEH54691.1| RNA methyltransferase, TrmA family [Bacillus coagulans 2-6]
Length = 457
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 134/310 (43%), Gaps = 58/310 (18%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ V + + G ++ TH ++D P +N AV+++++ +EL + Y
Sbjct: 131 YRNKAQVPVGEKNGKLVAGFFKPRTHEILDADESVIQLPAVNEAVQVVKEICRELGIPAY 190
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE+ +G LR++ + RY ++ +V +R + P+ KL L
Sbjct: 191 DEEHHSGVLRHIMV-------------RYGRKTGELMVVLITRTVELPHRKKLVDLV--- 234
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
SR + S+ N NVI G + + L G ++ +G I +++ SF Q
Sbjct: 235 ------VSRLPQVKSIVHNINPKRTNVILGEKTKVLWGNEVIYDKIGDIKFAISAPSFYQ 288
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEI------- 330
N +L K +Y S V D Y G G I L LA +K R V VEI
Sbjct: 289 VNPVQTKVLYEKALEYAELTGSETVIDAYCGIGTISLFLA--QKARKVFGVEIVPEAIED 346
Query: 331 -------NKESQLSFEKTVSR--LPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRK 381
N + + FE + +PK W+ A N +DVLVVDPPRK
Sbjct: 347 AKRNAALNGITNVEFEAGTAETVIPK-------WYEAGNK---------ADVLVVDPPRK 390
Query: 382 GLDSSLVHAL 391
G D +L+ +
Sbjct: 391 GCDEALLKTI 400
>gi|385263795|ref|ZP_10041882.1| RNA methyltransferase, TrmA family protein [Bacillus sp. 5B6]
gi|385148291|gb|EIF12228.1| RNA methyltransferase, TrmA family protein [Bacillus sp. 5B6]
Length = 462
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 85/355 (23%), Positives = 154/355 (43%), Gaps = 46/355 (12%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDF-------TFDSCRLYGWRCR 103
CP ++ C GC + + ++ + D + IG LD T + +R +
Sbjct: 77 CPIYKQCGGCQLQHMTYEGQLLFKQKQVKDILERIGKLDLSKVTVHPTLGMEDPWNYRNK 136
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A++ V + G YQ+ +H+++D+ C + + AV+ ++ V+ Y+E+
Sbjct: 137 AQVPVGEREGGLVAGFYQQRSHDIIDMSACLIQQSKNDEAVQAVKDICAAYGVKAYNEER 196
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL--ESLAEFLWR 221
G LR++ + RY ++ +V+ +R P+ K+ + A+F
Sbjct: 197 HKGWLRHITV-------------RYGVVTGEMMIVFITRTNDFPHKAKIIEDITAQF--- 240
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ S+ N + NVIFGN + GE ++ +G + +++ SF Q N
Sbjct: 241 --------PHVKSIVQNINPNKTNVIFGNETNVIWGEEYIYDLIGDVKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYG--ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L K +Y +V D Y G G I L L A++ + V VEI E+ +
Sbjct: 293 PEQTKVLYDKALEYAELQEEETVIDAYCGIGTISLFL--AKQAKKVYGVEIVPEA-IEDA 349
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
K + L + + A+ I W + +D LVVDPPRKG D +L+ +
Sbjct: 350 KRNAELNGIKNAEFAVGEAETVIP--KWYEEGITADTLVVDPPRKGCDEALLRTI 402
>gi|146295523|ref|YP_001179294.1| TrmA family RNA methyltransferase [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409099|gb|ABP66103.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 452
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/355 (24%), Positives = 155/355 (43%), Gaps = 48/355 (13%)
Query: 53 QCPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDFTFDSC----RLYGWR 101
+CP++ C GC H+ L + ++ D F+ IG L + + +R
Sbjct: 71 ECPYYYLCGGCHLMHAKYQHQLKLKKLLV----EDAFRRIGKLSPRINDVIGMENPFRYR 126
Query: 102 CRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDE 161
+ L V G P IG Y++ TH++VDI +C H + ++ ++ I++ +E YDE
Sbjct: 127 NKTALPVGGDYKKPQIGFYRKMTHDIVDIDYCLIQHEFCDDVIKGMKDLIQKHKIEVYDE 186
Query: 162 DDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
G LR++ S E + I LV K P + LE++ + +
Sbjct: 187 KKHKGVLRHI-----VVRNSFAFDE------MMIILVCT----KVP--ENLETIKKDILN 229
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
N I S++ N NVI G+ + G + + +G + ++P SF Q N
Sbjct: 230 NFSK------IKSLYLNLNPKRTNVILGDEDILIWGSSTIKDRIGNLTFEISPKSFFQVN 283
Query: 282 TRAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+ ++L ++ KY+ V D+Y+G G I + +A C+ V +EI +++ +
Sbjct: 284 SMQTEVLYSQVVKYLRNIDAEIVFDVYSGIGTISMFIAPF--CKKVYTIEIVEDAVEDAK 341
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
K+ S NI + IE L + +++DPPR G + L+ +L
Sbjct: 342 KSSKNNGIS---NIEFICGRAEIEIPKLLKNGIIPQAVILDPPRSGCEKELLESL 393
>gi|423514197|ref|ZP_17490713.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuA2-1]
gi|402442880|gb|EJV74797.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuA2-1]
Length = 459
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/358 (24%), Positives = 158/358 (44%), Gaps = 47/358 (13%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF---TFDSCRLYGWRCR 103
C ++ C GC + N R I+V +A + + + L + T + +R +
Sbjct: 80 CSVYEECGGCQLQHLDYKEQLNQKRDIVV-QAFEKYMNDSLEEKIRPTLGMENPWHYRNK 138
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
++L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E
Sbjct: 139 SQLQVGRKDEKVITGLYKQNSHQLIDISHCMIQHKATNEATKVVRRILEKLNVSIYNEKK 198
Query: 164 RTGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
+ G +R + + AV T G+VQ+TL+ + E+ PN D+ +AE
Sbjct: 199 QKGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKDQF--IAEM--- 238
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ----QKQMPSVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLN 294
Query: 282 TRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L + +K + + D Y G G IGL L A V+ +++ E+ +
Sbjct: 295 PEQTVVLYDEAKKAAALTGNEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIEDAK 352
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
K R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 353 KNAKRHGFT---NAKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|229056263|ref|ZP_04195684.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH603]
gi|228721068|gb|EEL72606.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH603]
Length = 459
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 88/358 (24%), Positives = 158/358 (44%), Gaps = 47/358 (13%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRL---YGWRCR 103
C ++ C GC + N R I+V +A + + + L + + + + +R +
Sbjct: 80 CSVYEECGGCQLQHLDYKEQLNQKRDIVV-QAFEKYMNDSLEEKIRPTLGMENPWHYRNK 138
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
++L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E
Sbjct: 139 SQLQVGRKDEKVITGLYKQNSHQLIDISHCMIQHKATNEATKVVRRILEKLNVSIYNEKK 198
Query: 164 RTGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
+ G +R + + AV T G+VQ+TL+ + E+ PN D+ +AE
Sbjct: 199 QKGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKDQF--IAEI--- 238
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ----QKQMPSVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLN 294
Query: 282 TRAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L + +K + D Y G G IGL L A V+ +++ E+ +
Sbjct: 295 PEQTVVLYDEAKKAAALIGNEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIEDAK 352
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
K R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 353 KNAKRHGFT---NAKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|16800929|ref|NP_471197.1| hypothetical protein lin1863 [Listeria innocua Clip11262]
gi|422413292|ref|ZP_16490251.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria innocua FSL
S4-378]
gi|423098459|ref|ZP_17086228.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria innocua ATCC
33091]
gi|50401774|sp|Q92AQ7.1|Y1863_LISIN RecName: Full=Uncharacterized RNA methyltransferase lin1863
gi|16414364|emb|CAC97093.1| lin1863 [Listeria innocua Clip11262]
gi|313618389|gb|EFR90415.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria innocua FSL
S4-378]
gi|370795125|gb|EHN62855.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria innocua ATCC
33091]
Length = 453
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 94/377 (24%), Positives = 163/377 (43%), Gaps = 52/377 (13%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDFTF-DSCRLYG-WRCRAKLAV 108
C + C GC+ + ++ ++ + K IG L+ D+ + WR R K V
Sbjct: 76 CAVYSKCGGCSLQHLSYDGQLAFKRNQVEETMKRIGKLNVEVPDTLGMENPWRYRNKSQV 135
Query: 109 -RGTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTG 166
G L G YQ+ +H+++D+ C H+ + + AV+ R+ + + EPYDE G
Sbjct: 136 PVGFVNGKLTAGFYQKRSHDIIDMSTCLIHNEKGDVAVQKTREILAKYGTEPYDEKTGKG 195
Query: 167 DLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSR 226
D+R++ R+ + Q+ +V + E+ P K E + +
Sbjct: 196 DIRHIMT-------------RFAHTTGQLMIVLVTTKERLPF--KAEIIQDL-------- 232
Query: 227 SREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFD 286
+ + + S+ N NVIFG+R + L G + + GI +++ SF Q N +
Sbjct: 233 TNQLEVTSIVQNINPQKTNVIFGDRTKTLWGSDIIEDTIHGIRFAISARSFYQVNPLQTE 292
Query: 287 ILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR 344
+L ++ +V D Y G G I L L A+K + V VEI ++ + + +
Sbjct: 293 VLYQQAIDSAELTGEETVIDAYCGIGSISLCL--AKKAKHVYGVEIVDQA-IQDARANAE 349
Query: 345 LPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI------- 394
L + A+ I W + +DVLVVDPPRKG D +L+ + ++
Sbjct: 350 LNNLTNTTFETGKAEEVIP--QWYKNGIVADVLVVDPPRKGCDETLLETILAMKPKKVVY 407
Query: 395 -----GSAERKAKSLSE 406
G+ R K L+E
Sbjct: 408 VSCNPGTLARDMKILTE 424
>gi|317127193|ref|YP_004093475.1| TrmA family RNA methyltransferase [Bacillus cellulosilyticus DSM
2522]
gi|315472141|gb|ADU28744.1| RNA methyltransferase, TrmA family [Bacillus cellulosilyticus DSM
2522]
Length = 457
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 95/365 (26%), Positives = 150/365 (41%), Gaps = 56/365 (15%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDFTFDSCRL---YGWRCRAKLA 107
CP F+ C GC + ++ D IG ++ L WR R K
Sbjct: 77 CPIFKECGGCQLQHLSYDGQLKHKQKHVMDVLSRIGGMNDVHVHPTLGMEEPWRYRNKAQ 136
Query: 108 V-RGTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
V G L+ G Y E +H ++D+ C + V L++ K+ V YDE+
Sbjct: 137 VPFGEEEGGLVAGFYAERSHKIIDMDRCMIQQEENDEVVMLVKDIAKKYGVRGYDEEKHK 196
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSR---NEKSPNSDKLESLAEFLWRN 222
G LR+V VT Y + G++ + LV + N+K+ D +SL +
Sbjct: 197 GTLRHV---VTRYGKN--------TGELMVVLVTKGKELPNKKNIVQDIRDSLPK----- 240
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ S+ N NVIFG++ L GE ++ +G I +++ SF Q N
Sbjct: 241 ---------VKSIVQNINPKRTNVIFGDKTEVLWGEEVIYDTIGDIKFAISARSFYQVNP 291
Query: 283 RAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEI--------NK 332
++L K ++ +V D Y G G I L L A++ + V VEI K
Sbjct: 292 TQTEVLYNKTLEFAGLSGNETVIDAYCGIGTISLFL--AQRAKHVYGVEIVPEAISDAKK 349
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQ 392
+QL+ + V + + W A + +DV+VVDPPRKG D L+ +
Sbjct: 350 NAQLNGIENVDFAVGEAEKVMPWWYAQG--------IRADVIVVDPPRKGCDEELLETIV 401
Query: 393 SIGSA 397
+ A
Sbjct: 402 KMKPA 406
>gi|421732621|ref|ZP_16171739.1| RNA methyltransferase, TrmA family protein [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|407073429|gb|EKE46424.1| RNA methyltransferase, TrmA family protein [Bacillus
amyloliquefaciens subsp. plantarum M27]
Length = 458
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/355 (23%), Positives = 155/355 (43%), Gaps = 46/355 (12%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDF-------TFDSCRLYGWRCR 103
CP ++ C GC + + ++ + D + IG LD T + +R +
Sbjct: 77 CPIYKQCGGCQLQHMTYEGQLLFKQKQVKDVLERIGKLDLSNVTVHPTLGMEDPWNYRNK 136
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A++ V + + G YQ+ +H+++D+ C + + AV+ ++ V+ Y+E+
Sbjct: 137 AQVPVGERESGLVAGFYQQRSHDIIDMSACLIQQSKNDEAVQAVKDICAAYGVKAYNEER 196
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL--ESLAEFLWR 221
G LR++ + RY ++ +V+ +R P+ K+ + A+F
Sbjct: 197 HKGWLRHIMV-------------RYGVVTGEMMIVFITRTGDFPHKAKIIEDITAQF--- 240
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ S+ N + NVIFG+ + GE ++ +G + +++ SF Q N
Sbjct: 241 --------PHVKSIVQNINPNKTNVIFGDETNVIWGEEYIYDLIGDVKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L K +Y +V D Y G G I L L A++ + V VEI E+ +
Sbjct: 293 PEQTKVLYDKALEYAELQGEETVIDAYCGIGTISLFL--AKQAKKVYGVEIVPEA-IGDA 349
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
K + L + + A+ I W + +D LVVDPPRKG D +L+ +
Sbjct: 350 KRNAELNGITNAEFAVGEAETVIP--KWYEEGITADTLVVDPPRKGCDEALLRTI 402
>gi|296330132|ref|ZP_06872614.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305673376|ref|YP_003865048.1| RNA methyltransferase [Bacillus subtilis subsp. spizizenii str.
W23]
gi|296152721|gb|EFG93588.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305411620|gb|ADM36739.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii
str. W23]
Length = 459
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/355 (23%), Positives = 154/355 (43%), Gaps = 46/355 (12%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDF-------TFDSCRLYGWRCR 103
CP ++ C GC + + ++ + D + IG LD T + +R +
Sbjct: 77 CPIYKQCGGCQLQHMTYEGQLLFKQKQVKDVLERIGKLDLSNVTVHPTLGMEDPWNYRNK 136
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A++ V + G YQ+ +H+++D+ C + + AV+ ++ V+ Y+E+
Sbjct: 137 AQVPVGEREGGLVAGFYQQRSHDIIDMSACLIQQSKNDEAVQAVKDICANYGVKAYNEER 196
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL--ESLAEFLWR 221
G LR++ + RY ++ +V+ ++ P+ K+ + A+F
Sbjct: 197 HKGWLRHIMV-------------RYGVVTGEMMIVFITKTNDFPHKAKIIEDITAQF--- 240
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ S+ N + NVIFGN + GE ++ +G + +++ SF Q N
Sbjct: 241 --------PHVKSIVQNINPNKTNVIFGNDTNVIWGEEYIYDLIGDVKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L K +Y +V D Y G G I L L A++ + V VEI E+ +
Sbjct: 293 PEQTKVLYDKALEYAELKGEETVIDAYCGIGTISLFL--AKQAKKVYGVEIVPEA-IEDA 349
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
K + L + + A+ I W + +D LVVDPPRKG D +L+ +
Sbjct: 350 KRNAELNGITNAEFAVGEAETVIP--KWYEEGITADTLVVDPPRKGCDETLLRTI 402
>gi|116334661|ref|YP_796188.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
brevis ATCC 367]
gi|116100008|gb|ABJ65157.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
brevis ATCC 367]
Length = 487
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/314 (25%), Positives = 140/314 (44%), Gaps = 55/314 (17%)
Query: 98 YGWRCRAKLAVRGTSTSPL-IGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNV 156
YG+R +A+ VR + + GLY E +H+++D+P C P + + +++L++
Sbjct: 159 YGYRNKAQFQVRRNAEGQVEAGLYAERSHDLIDLPTCSVQMPVTMTVMRAVVAMLQDLDM 218
Query: 157 EPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLA 216
YDE+ ++G ++ + + + VQ+ + NS KL
Sbjct: 219 PIYDEEQKSGIVKTLVVRAAAHTDD-----------VQLVFIT--------NSPKLPHKR 259
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
E L R + + SV N ++++G+ RHL G E +G + L+ +
Sbjct: 260 ELLERIANELPQ---VTSVMQNINPGETSLVWGDDTRHLAGAEAITEKLGDLTFKLSARA 316
Query: 277 FGQANTRAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q N ++L + +K + G +V D YAG G IGLSLA V+ +EI
Sbjct: 317 FLQLNPAQTEVLYDEAKKALDLQPGQTVVDAYAGIGTIGLSLADV--AAEVRGMEI---- 370
Query: 335 QLSFEKTVSRLPKSVD---------GNISWHNADNSIEPL--SWLVGS---DVLVVDPPR 380
+P++VD G + H + E L W++ D +VVDPPR
Sbjct: 371 ----------IPEAVDDANANAAANGITNAHYEVGTAEDLLPKWVMAGFRPDAIVVDPPR 420
Query: 381 KGLDSSLVHALQSI 394
GLD++L+ + +I
Sbjct: 421 TGLDATLIETILAI 434
>gi|229165425|ref|ZP_04293209.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH621]
gi|228618023|gb|EEK75064.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH621]
Length = 459
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/358 (24%), Positives = 158/358 (44%), Gaps = 47/358 (13%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF---TFDSCRLYGWRCR 103
C ++ C GC + N R I+V +A + + + L + T + +R +
Sbjct: 80 CSVYEECGGCQLQHLDYKEQLNQKRDIVV-QAFEKYMNDSLEEKIRPTLGMENPWHYRNK 138
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
++L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E
Sbjct: 139 SQLQVGRKDEKVITGLYKQNSHQLIDISHCMIQHKATNEATKVVRRILEKLNVSIYNEKK 198
Query: 164 RTGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
+ G +R + + AV T G+VQ+TL+ + E+ PN D+ +AE
Sbjct: 199 QKGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKDQF--IAEV--- 238
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ----QKQMPSVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLN 294
Query: 282 TRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L + +K + + D Y G G IGL L A V+ +++ E+ +
Sbjct: 295 PEQTVVLYDEAKKAAALTGNEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIEDAK 352
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
K R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 353 KNAKRHGFT---NAKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|422851360|ref|ZP_16898030.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK150]
gi|325694948|gb|EGD36853.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK150]
Length = 456
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 139/301 (46%), Gaps = 40/301 (13%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + G +++ +H+++ I P I+ + R ++ +++P
Sbjct: 125 GYRNKAQVPVRRVNGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R +L + +G++ + LV P ++E L +
Sbjct: 185 YDEQEKTGLIR-----------NLVVRRGHYSGEIMVILVTTR-----PKIFRVEQLMD- 227
Query: 219 LWRNGGSRSREHY--IHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
R E + I S+ N N IFG WR L G+ + + G D +A +
Sbjct: 228 -------RLTEAFPAIKSIMQNINDQPGNAIFGKDWRMLYGQDYITDQMLGNDFQIAAPA 280
Query: 277 FGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q NT + L + + V D Y+G G IGLS+ A++ + V VE+ E+
Sbjct: 281 FYQVNTEMAEKLYQTAIDFSELTTEDVVLDAYSGIGTIGLSV--AKQVKQVYGVEVIPEA 338
Query: 335 QLSFEKTVSRLPKSVDG--NISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVH 389
+ +K +++G N S+ A +WL + +DV++VDPPRKGL S +
Sbjct: 339 VENSQKNA-----AINGITNASYVCAPAEEAIQNWLKEGIQADVILVDPPRKGLTESFIK 393
Query: 390 A 390
A
Sbjct: 394 A 394
>gi|386054004|ref|YP_005971562.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
Finland 1998]
gi|346646655|gb|AEO39280.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
Finland 1998]
Length = 453
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 86/354 (24%), Positives = 157/354 (44%), Gaps = 42/354 (11%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKL 106
C + C GC+ + ++ ++ + K IG L+ T + +R ++++
Sbjct: 76 CAVYSKCGGCSLQHLSYDGQLEFKRNQVEETMKRIGKLNVEVPETLGMENPWRYRNKSQV 135
Query: 107 AVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTG 166
V + G YQ+ +H ++D+ C H+ + + AV+ R+ + + EPYDE G
Sbjct: 136 PVGFVNGKLTAGFYQKRSHAIIDMSTCLIHNEQGDLAVQKTREILAKYGTEPYDEQTGKG 195
Query: 167 DLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRNGGS 225
D+R++ R+ + Q+ +V + E+ P +++ L E L
Sbjct: 196 DIRHIMT-------------RFAHTTGQLMIVLVTTKERMPFKEEIVRDLVEQLE----- 237
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
+ S+ N NVIFG+R + L G+ + + GI +++ SF Q N
Sbjct: 238 ------LTSIVQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPLQT 291
Query: 286 DILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
++L ++ +V D Y G G I L L A+K + V VEI ++ + + +
Sbjct: 292 EVLYQQAIDAAELTGEETVIDAYCGIGSISLCL--AKKAKHVYGVEIVDQA-IQDARANA 348
Query: 344 RLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
L + + A+ I SW + +DVLVVDPPRKG D L+ + ++
Sbjct: 349 ELNELANTTFETGKAEEVIP--SWYKAGIVADVLVVDPPRKGCDEKLLETILAM 400
>gi|422882551|ref|ZP_16929007.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK355]
gi|332359419|gb|EGJ37239.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK355]
Length = 469
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 137/299 (45%), Gaps = 36/299 (12%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + G +++ +H+++ I P I+ + R ++ +++P
Sbjct: 138 GYRNKAQVPVRRVNGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKP 197
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R +L + +G++ + +V P ++E L E
Sbjct: 198 YDEQEKTGLIR-----------NLVVRRGHYSGEIMVIMVTTR-----PKIFRVEQLMER 241
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
L + I S+ N N IFG WR L G+ + + G D +A +F
Sbjct: 242 LTETFPA------IKSIMQNINDQPGNAIFGKDWRTLYGQDYITDQMLGNDFQIAAPAFY 295
Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q NT + L + + A V D Y+G G IGLS+ A+ + V +E+ E+
Sbjct: 296 QVNTEMAEKLYQTAIDFSELTADDMVIDAYSGIGTIGLSV--AKHVKQVYGMEVIPEAVE 353
Query: 337 SFEKTVSRLPKSVDG--NISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHA 390
+ SR ++G N S+ A +WL + +DV++VDPPRKGL S + A
Sbjct: 354 N-----SRKNAEINGIANASYVCAPAEEAIQNWLKEGIQADVILVDPPRKGLTESFIKA 407
>gi|347752051|ref|YP_004859616.1| TrmA family RNA methyltransferase [Bacillus coagulans 36D1]
gi|347584569|gb|AEP00836.1| RNA methyltransferase, TrmA family [Bacillus coagulans 36D1]
Length = 457
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 134/310 (43%), Gaps = 58/310 (18%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ V + + G ++ TH ++D P +N AV+++++ +EL + Y
Sbjct: 131 YRNKAQVPVGEKNGKLVAGFFKPRTHEILDADESVIQLPAVNEAVQVVKEICRELGIPAY 190
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE+ +G LR++ + RY ++ +V +R + P+ KL L
Sbjct: 191 DEEHHSGVLRHIMV-------------RYGRKTGELMVVLITRTVELPHRKKLVDLV--- 234
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
SR + S+ N NVI G + + L G ++ +G I +++ SF Q
Sbjct: 235 ------VSRLPQVKSIVHNINPKRTNVILGEKTKVLWGNEVIYDKIGDIKFAISAPSFYQ 288
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEI------- 330
N +L K +Y S V D Y G G I L LA +K R V VEI
Sbjct: 289 VNPVQTKVLYEKALEYAELTGSETVIDAYCGIGTISLFLA--QKARKVFGVEIVPEAIED 346
Query: 331 -------NKESQLSFEKTVSR--LPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRK 381
N + + FE + +PK W+ A N +DVLVVDPPRK
Sbjct: 347 AKRNAALNGITNVEFEAGTAETVIPK-------WYEAGNK---------ADVLVVDPPRK 390
Query: 382 GLDSSLVHAL 391
G D +L+ +
Sbjct: 391 GCDEALLKTI 400
>gi|392530283|ref|ZP_10277420.1| putative RNA methyltransferase [Carnobacterium maltaromaticum ATCC
35586]
Length = 458
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 147/323 (45%), Gaps = 57/323 (17%)
Query: 82 FKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRIN 141
F++IG+ +G+R +A++ VR + G +++ +H+++ + P+I+
Sbjct: 122 FETIGM-------AEPWGYRNKAQIPVRKQNDKLTTGFFRKNSHDLIAMEDFVIQDPKID 174
Query: 142 AAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNS 201
AV ++R ++E NV+PY+E TG+LR++ + Y G++ I LV +
Sbjct: 175 QAVVIVRDIMREFNVKPYNEAANTGNLRHIVV-----------RRGYHTGEIMIVLVTRT 223
Query: 202 RNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDF 261
N+ P S L ++ E L + S+ N S N I G L G+ F
Sbjct: 224 -NKLFPTSKILPAITEALPE----------VVSIIQNVNPSRTNKILGPENIVLWGQDYF 272
Query: 262 WENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAA- 318
+ + G ++ S+F Q N + L + + +Y +V D Y G G I LSLA
Sbjct: 273 TDTLLGNTFQISASAFYQVNPTQTEKLYQTVLEYAELTGKETVIDAYCGIGTISLSLAKE 332
Query: 319 ARKCRSVKCVE-----------INKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW 367
A++ ++ VE +N ++FE ++ + + W + ++
Sbjct: 333 AKEVYGIEVVEAAVENAKNNAKLNGIENVTFEAGLAE-----EVMVEWAEKELAV----- 382
Query: 368 LVGSDVLVVDPPRKGLDSSLVHA 390
D+LVVDPPRKGL+ S + A
Sbjct: 383 ----DLLVVDPPRKGLEGSFIEA 401
>gi|422416268|ref|ZP_16493225.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria innocua FSL
J1-023]
gi|313623370|gb|EFR93595.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria innocua FSL
J1-023]
Length = 453
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/377 (23%), Positives = 163/377 (43%), Gaps = 52/377 (13%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKL 106
C + C GC+ + ++ ++ + K IG L+ T + +R ++++
Sbjct: 76 CAVYSKCGGCSLQHLSYDGQLAFKRNQVEETMKRIGKLNVEVPETLGMENPWRYRNKSQV 135
Query: 107 AVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTG 166
V + G YQ+ +H+++D+ C H+ + + AV+ R+ + + EPYDE G
Sbjct: 136 PVGFVNGKLTAGFYQKRSHDIIDMSTCLIHNEKGDVAVQKTREILAKYGTEPYDEKTGKG 195
Query: 167 DLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSR 226
D+R++ R+ + Q+ +V + E+ P K E + +
Sbjct: 196 DIRHIMT-------------RFAHTTGQLMIVLVTTKERLPF--KAEIIQDL-------- 232
Query: 227 SREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFD 286
+ + + S+ N NVIFG+R + L G + + GI +++ SF Q N +
Sbjct: 233 TNQLEVTSIVQNINPQKTNVIFGDRTKTLWGSDIIEDTIHGIRFAISARSFYQVNPLQTE 292
Query: 287 ILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR 344
+L ++ +V D Y G G I L L A+K + V VEI ++ + + +
Sbjct: 293 VLYQQAIDSAELTGEETVIDAYCGIGSISLCL--AKKAKHVYGVEIVDQA-IQDARANAE 349
Query: 345 LPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI------- 394
L + A+ I W + +DVLVVDPPRKG D +L+ + ++
Sbjct: 350 LNNLTNTTFETGKAEEVIP--QWYKNGIVADVLVVDPPRKGCDETLLETILAMKPKKVVY 407
Query: 395 -----GSAERKAKSLSE 406
G+ R K L+E
Sbjct: 408 VSCNPGTLARDMKILTE 424
>gi|377556970|ref|ZP_09786639.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lactobacillus
gastricus PS3]
gi|376166809|gb|EHS85690.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lactobacillus
gastricus PS3]
Length = 455
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 148/324 (45%), Gaps = 32/324 (9%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+ +R +A++ VR G Y+ G+H +V I + P I+ ++++R I++ ++
Sbjct: 127 FQYRNKAQVPVRFIRGQIETGFYKRGSHELVPIENFYIQDPVIDETIKIVRDLIRQYHIR 186
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
YDE +TGDL+ + + Y+ Q+ +V +R K P+ +L
Sbjct: 187 AYDEVKQTGDLKTIMVRRGYYSH-------------QVMVVLVTRTTKLPHQAELVQ--- 230
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
G + I S+ N + NV+ G L G + + GID +++P SF
Sbjct: 231 ------GIVDQVPGITSIIQNINSKPTNVVLGRENHTLWGAETIHDQLLGIDFTISPLSF 284
Query: 278 GQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAA-ARKCRSVKCVEIN-KE 333
Q N + + L + Y +V D Y G G I L++A A+K V+ VE ++
Sbjct: 285 YQVNPQQTERLYQTAIDYAELDGNQTVIDAYCGIGTISLAVAKHAKKVYGVEIVEAAIQD 344
Query: 334 SQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQS 393
++L+ + + V G A + L DVL+VDPPRKGLD ++ A
Sbjct: 345 AKLNAQHNQIENAEFVVGKAEEQMAKWQAQGLK----PDVLIVDPPRKGLDERVIEAAGQ 400
Query: 394 IGSAERKAKSLSESSSSMVKEEKR 417
+ +K +S + +++V++ KR
Sbjct: 401 M--TPQKIVYISCNPATLVRDLKR 422
>gi|427439394|ref|ZP_18924049.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pediococcus lolii NGRI
0510Q]
gi|425788230|dbj|GAC44837.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pediococcus lolii NGRI
0510Q]
Length = 455
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 85/323 (26%), Positives = 158/323 (48%), Gaps = 33/323 (10%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR G ++ G+H++V I P I+ + +R ++E +EP
Sbjct: 129 GYRNKAQVPVRKVKGQLATGFFKRGSHDLVPIEDFYIQDPVIDQVILQVRDILREYQIEP 188
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++ G +R ++ R+G++ + L+ +R P+ L+ +A
Sbjct: 189 YDEINQRGVVR-----------NIMVRRGRRSGEIMVVLI--TRTSSVPH---LDEIAAA 232
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+++ G + SV N NVI G R L GE+ + + G ++ SF
Sbjct: 233 IYQIDG-------VVSVIQNINPKQTNVIMGKEDRLLAGESVIHDELLGQKFIISAHSFY 285
Query: 279 QANTRAFDILLR-KLQKYVPYGA-SVTDLYAGAGVIGLSLA-AARKCRSVKCV-EINKES 334
Q N + L + ++K G +V D+Y+G G I L++A AA+K V+ V E +++
Sbjct: 286 QVNPVQTEKLYQLAIEKAGLTGKETVLDVYSGIGTISLAMAQAAKKVYGVEIVKEAVQDA 345
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSI 394
+++ + ++ K V G A E + DV+VVDPPRKGLD S++ A ++
Sbjct: 346 KVNAVQNQAKNVKFVVGKAEDQMAKWQAEGMQ----PDVVVVDPPRKGLDESVIDA--TV 399
Query: 395 GSAERKAKSLSESSSSMVKEEKR 417
A ++ +S + +++V++ R
Sbjct: 400 AMAPKRVVYVSCNPATLVRDIDR 422
>gi|297528755|ref|YP_003670030.1| TrmA family RNA methyltransferase [Geobacillus sp. C56-T3]
gi|297252007|gb|ADI25453.1| RNA methyltransferase, TrmA family [Geobacillus sp. C56-T3]
Length = 457
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 90/355 (25%), Positives = 150/355 (42%), Gaps = 42/355 (11%)
Query: 54 CPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRCR 103
CP ++ C GC ++E L + + IG LD + +R +
Sbjct: 78 CPVYRQCGGCQLQHVSYEGQLKAK--EKQVKEVLARIGKLDGVTVHPVIGMKNPWRYRNK 135
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A++ + + G Y+E +H ++D+ C + + V+ +++ + + PYDE
Sbjct: 136 AQVPIGEREGGLVAGFYKERSHEIIDMDACLIQQEKNDVVVQTVKRIAERYGIPPYDETT 195
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNG 223
G LR++ V Y + G+V + LV +R E P+ + + + R
Sbjct: 196 HKGVLRHI---VARYGAA--------TGEVMVVLV--TRTEHLPHE---QEIVRAIVREI 239
Query: 224 GSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTR 283
+ S+ N NVIFG + R L G + +GGI +++ SF Q N
Sbjct: 240 PD------VTSIVQNVNPERTNVIFGAKTRVLWGSEFITDRIGGIQFAISARSFYQVNPE 293
Query: 284 AFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y +V D Y G G I L L ARK + V VEI E+ ++
Sbjct: 294 QTKVLYDKALEYAELTGRETVIDAYCGIGTISLFL--ARKAKHVYGVEIVPEAIEDAKRN 351
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHALQSI 394
P + A + P + G +D LVVDPPRKG D+SL+ + ++
Sbjct: 352 AK--PNGIQNVTFEVGAAEDVIPRWYEEGIRADCLVVDPPRKGCDASLLETIIAM 404
>gi|157691441|ref|YP_001485903.1| TrmA family RNA methyltransferase [Bacillus pumilus SAFR-032]
gi|157680199|gb|ABV61343.1| TrmA family RNA methyltransferase [Bacillus pumilus SAFR-032]
Length = 465
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/353 (23%), Positives = 151/353 (42%), Gaps = 42/353 (11%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDFT-------FDSCRLYGWRCR 103
CP ++ C GC + + ++ + D + IG LD + + +R +
Sbjct: 78 CPIYKQCGGCQIQHMSYEGQLLFKQKQVKDVLERIGKLDMSRVKVHPVLGMEDPWNYRNK 137
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A++ V + G YQ+ TH ++D+ C + V+ +++ + ++ Y+E+
Sbjct: 138 AQVPVGEREGGLVAGFYQQRTHEIIDMEKCLIQQSENDEVVQAVKEICQAFGIKAYNEER 197
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNG 223
G LR+V + RY ++ +V+ +R + P K + + + +
Sbjct: 198 HKGWLRHVMV-------------RYGIATGEMMVVFVTRTAEFPQ--KQQVIEQII---- 238
Query: 224 GSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTR 283
+R +I S+ N + NVIFG+ L GE ++ +G I +++ SF Q N
Sbjct: 239 ---ARFPHIRSIVQNVNSKKTNVIFGDETTVLWGEEYIYDTIGDIKFAISARSFYQVNPA 295
Query: 284 AFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y +V D Y G G I L L A+K V VEI E + E
Sbjct: 296 QTKMLYDKALEYAELQGEETVIDAYCGIGTISLFL--AQKAGRVYGVEIVPE---AIEDA 350
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ N+ + + +W + +D LVVDPPRKG D +L+ +
Sbjct: 351 KRNAALNGINNVEFAVGEAETVIPNWYKEGIKADTLVVDPPRKGCDEALLDTI 403
>gi|16803791|ref|NP_465276.1| hypothetical protein lmo1751 [Listeria monocytogenes EGD-e]
gi|47095677|ref|ZP_00233284.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str.
1/2a F6854]
gi|254913771|ref|ZP_05263783.1| RNA methyltransferase [Listeria monocytogenes J2818]
gi|254938158|ref|ZP_05269855.1| RNA methyltransferase [Listeria monocytogenes F6900]
gi|255028262|ref|ZP_05300213.1| hypothetical protein LmonL_01654 [Listeria monocytogenes LO28]
gi|386047403|ref|YP_005965735.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
J0161]
gi|386050728|ref|YP_005968719.1| RNA methyltransferase [Listeria monocytogenes FSL R2-561]
gi|404284247|ref|YP_006685144.1| TrmA/RumA/YefA-family RNA methyltransferase [Listeria monocytogenes
SLCC2372]
gi|405758802|ref|YP_006688078.1| TrmA/RumA/YefA-family RNA methyltransferase [Listeria monocytogenes
SLCC2479]
gi|50401632|sp|Q8Y6D6.1|Y1751_LISMO RecName: Full=Uncharacterized RNA methyltransferase lmo1751
gi|16411205|emb|CAC99829.1| lmo1751 [Listeria monocytogenes EGD-e]
gi|47015962|gb|EAL06888.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str.
1/2a F6854]
gi|258610771|gb|EEW23379.1| RNA methyltransferase [Listeria monocytogenes F6900]
gi|293591787|gb|EFG00122.1| RNA methyltransferase [Listeria monocytogenes J2818]
gi|345534394|gb|AEO03835.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
J0161]
gi|346424574|gb|AEO26099.1| RNA methyltransferase [Listeria monocytogenes FSL R2-561]
gi|404233749|emb|CBY55152.1| RNA methyltransferase, TrmA/RumA/YefA-family [Listeria
monocytogenes SLCC2372]
gi|404236684|emb|CBY58086.1| RNA methyltransferase, TrmA/RumA/YefA-family [Listeria
monocytogenes SLCC2479]
Length = 453
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 86/354 (24%), Positives = 157/354 (44%), Gaps = 42/354 (11%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKL 106
C + C GC+ + ++ ++ + K IG L+ T + +R ++++
Sbjct: 76 CAVYSKCGGCSLQHLSYDGQLEFKRNQVEETMKRIGKLNVEVPETLGMENPWRYRNKSQV 135
Query: 107 AVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTG 166
V + G YQ+ +H ++D+ C H+ + + AV+ R+ + + EPYDE G
Sbjct: 136 PVGFVNGKLTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDEQTGKG 195
Query: 167 DLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRNGGS 225
D+R++ R+ + Q+ +V + E+ P +++ L E L
Sbjct: 196 DIRHIMT-------------RFAHTTGQLMIVLVTTKERMPFKEEIVRDLVEQLE----- 237
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
+ S+ N NVIFG+R + L G+ + + GI +++ SF Q N
Sbjct: 238 ------LTSIVQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPLQT 291
Query: 286 DILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
++L ++ +V D Y G G I L L A+K + V VEI ++ + + +
Sbjct: 292 EVLYQQAIDAAELTGEETVIDAYCGIGSISLCL--AKKAKHVYGVEIVDQA-IQDARANA 348
Query: 344 RLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
L + + A+ I SW + +DVLVVDPPRKG D L+ + ++
Sbjct: 349 ELNELANTTFETGKAEEVIP--SWYKAGIVADVLVVDPPRKGCDEKLLETILAM 400
>gi|350265071|ref|YP_004876378.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus subtilis
subsp. spizizenii TU-B-10]
gi|349597958|gb|AEP85746.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus subtilis
subsp. spizizenii TU-B-10]
Length = 466
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 86/369 (23%), Positives = 156/369 (42%), Gaps = 67/369 (18%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIV---DEATDFFKSIGLLDFTFDSCRLYGWRCR 103
CP ++ C GC + + R I++ + T F + T + +R +
Sbjct: 82 CPVYEQCGGCQLQHLAYSQQLREKRDIVIQSLERHTKFKVENMEIKETIGMDNPWNYRNK 141
Query: 104 AKLAV-RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
++ + R S S + GLY +H++V I C HP N ++R+ +++ NV Y+E
Sbjct: 142 SQFQIGRSQSGSIIAGLYGLDSHDIVPIKDCVVQHPATNKTTGIVRRILEDFNVSVYNER 201
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
R GD+R + V + G+VQ+ LV + E P+ +++ +
Sbjct: 202 KRKGDVRTIVTRVG-----------FETGEVQVVLV--TAKETLPHKEEIVKAIQ----- 243
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
R + S+ N + +VIFG + + L G+T E +G + L+ +F Q N
Sbjct: 244 ----KRLPEVKSIIQNVNGAKTSVIFGEKTKPLAGKTVIQEVLGDVSFELSARAFFQLNP 299
Query: 283 RAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
L +++K V D Y G G IG+ +A K V+ +++ KES +K
Sbjct: 300 EQTVKLYDEVKKAAQLTGKEKVVDAYCGVGTIGMWVADGAK--EVRGMDVIKESIDDAKK 357
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPPRKGLDS 385
N H N+ +++ G+ DV++VDPPR G D+
Sbjct: 358 -----------NAKKHGMTNA----TYVTGTAEHWLPKWTKEGFRPDVVIVDPPRTGCDN 402
Query: 386 SLVHALQSI 394
+ + ++ +
Sbjct: 403 TFLDTIKKV 411
>gi|56962873|ref|YP_174600.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Bacillus
clausii KSM-K16]
gi|56909112|dbj|BAD63639.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Bacillus
clausii KSM-K16]
Length = 458
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 89/360 (24%), Positives = 148/360 (41%), Gaps = 52/360 (14%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRL--------------YG 99
CP F C GC + + A +K + D +L +
Sbjct: 78 CPIFYKCGGCQIQHMDY------SAQLAYKQKQVKDVMGRVAKLPDVPVPPVIGMDDPWR 131
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R ++++ V + G Y + +H++VD+ C H + V+ ++Q KEL + Y
Sbjct: 132 YRNKSQVPVAFQKGDLVAGFYAKRSHSIVDMDQCIIQHKENDIVVQTVKQLAKELRIPAY 191
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
E G LR++ RY Q+ +V ++ +K P+ + S
Sbjct: 192 QEQSHQGVLRHI-------------VARYGKTTGQVMVVLVTKEKKLPHKEAFIS----- 233
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
G R + S+ N NVIFG + L GE ++ + I +++ SF Q
Sbjct: 234 ----GIRKHVPGVVSIVQNINNKRTNVIFGQQTDVLWGEHYLYDEINSIRFAISARSFYQ 289
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
N + L K +Y + V D Y G G I L L A+K R V VEI E+ +
Sbjct: 290 VNPEQTNRLYSKALEYADLTGNEIVIDAYCGIGTISLFL--AKKARHVYGVEIVPEA-IK 346
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
K ++L + + + A+ I W + +DV+VVDPPRKG D +L+ + +
Sbjct: 347 DAKRNAKLNQITNATFAVGEAEEVIP--RWHDQGIDADVIVVDPPRKGCDEALLRTMMEM 404
>gi|404413829|ref|YP_006699416.1| TrmA/RumA/YefA-family RNA methyltransferase [Listeria monocytogenes
SLCC7179]
gi|404239528|emb|CBY60929.1| RNA methyltransferase, TrmA/RumA/YefA-family [Listeria
monocytogenes SLCC7179]
Length = 453
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 86/354 (24%), Positives = 157/354 (44%), Gaps = 42/354 (11%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKL 106
C + C GC+ + ++ ++ + K IG L+ T + +R ++++
Sbjct: 76 CAVYSKCGGCSLQHLSYDGQLEFKRNQVEETMKRIGKLNVEVPETLGMENPWRYRNKSQV 135
Query: 107 AVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTG 166
V + G YQ+ +H ++D+ C H+ + + AV+ R+ + + EPYDE G
Sbjct: 136 PVGFVNGKLTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDEQTGKG 195
Query: 167 DLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRNGGS 225
D+R++ R+ + Q+ +V + E+ P +++ L E L
Sbjct: 196 DIRHIMT-------------RFAHTTGQLMIVLVTTKERMPFKEEIVRDLVEQLE----- 237
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
+ S+ N NVIFG+R + L G+ + + GI +++ SF Q N
Sbjct: 238 ------LTSIVQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPLQT 291
Query: 286 DILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
++L ++ +V D Y G G I L L A+K + V VEI ++ + + +
Sbjct: 292 EVLYQQAIDAAELTGEETVIDAYCGIGSISLCL--AKKAKHVYGVEIVDQA-IQDARANA 348
Query: 344 RLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
L + + A+ I SW + +DVLVVDPPRKG D L+ + ++
Sbjct: 349 ELNELANTTFETGKAEEVIP--SWYKAGIVADVLVVDPPRKGCDEKLLETILAM 400
>gi|163938416|ref|YP_001643300.1| RNA methyltransferase [Bacillus weihenstephanensis KBAB4]
gi|229009910|ref|ZP_04167129.1| Uncharacterized RNA methyltransferase [Bacillus mycoides DSM 2048]
gi|229131423|ref|ZP_04260319.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST196]
gi|423485713|ref|ZP_17462395.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BtB2-4]
gi|423491437|ref|ZP_17468081.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
CER057]
gi|423501770|ref|ZP_17478387.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
CER074]
gi|423515264|ref|ZP_17491745.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuA2-4]
gi|423596515|ref|ZP_17572542.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD048]
gi|423602053|ref|ZP_17578053.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD078]
gi|423664453|ref|ZP_17639618.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
VDM022]
gi|423671860|ref|ZP_17646864.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
VDM034]
gi|423677679|ref|ZP_17652614.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
VDM062]
gi|163860613|gb|ABY41672.1| RNA methyltransferase, TrmA family [Bacillus weihenstephanensis
KBAB4]
gi|228652007|gb|EEL07948.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST196]
gi|228751341|gb|EEM01148.1| Uncharacterized RNA methyltransferase [Bacillus mycoides DSM 2048]
gi|401152217|gb|EJQ59656.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
CER074]
gi|401159781|gb|EJQ67161.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
CER057]
gi|401167390|gb|EJQ74674.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuA2-4]
gi|401219685|gb|EJR26337.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD048]
gi|401227917|gb|EJR34445.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD078]
gi|401290701|gb|EJR96390.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
VDM034]
gi|401293024|gb|EJR98673.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
VDM022]
gi|401306149|gb|EJS11658.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
VDM062]
gi|402440977|gb|EJV72955.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BtB2-4]
Length = 459
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 89/358 (24%), Positives = 158/358 (44%), Gaps = 47/358 (13%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF---TFDSCRLYGWRCR 103
C ++ C GC + N R I+V +A + + + L + T + +R +
Sbjct: 80 CSVYEECGGCQLQHLDYKEQLNQKRDIVV-QAFEKYMNNSLEEKIRPTLGMENPWHYRNK 138
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
++L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E
Sbjct: 139 SQLQVGRKDEKVITGLYKQNSHQLIDISHCMIQHKATNEATKVVRRILEKLNVSIYNEKK 198
Query: 164 RTGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
+ G +R + + AV T G+VQ+TL+ + E+ PN D+ +AE
Sbjct: 199 QKGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKDQF--IAEV--- 238
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ----QKQMPSVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLN 294
Query: 282 TRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L + +K + + D Y G G IGL L A V+ +++ E+ +
Sbjct: 295 PEQTVVLYDEAKKAAALTGNEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIEDAK 352
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
K R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 353 KNAKRHGFT---NAKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|150391752|ref|YP_001321801.1| RNA methyltransferase [Alkaliphilus metalliredigens QYMF]
gi|149951614|gb|ABR50142.1| RNA methyltransferase, TrmA family [Alkaliphilus metalliredigens
QYMF]
Length = 452
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/349 (24%), Positives = 148/349 (42%), Gaps = 35/349 (10%)
Query: 53 QCPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAK 105
+CP C GC + + R + + K + T Y +R +A+
Sbjct: 71 RCPIADVCGGCQIMHMDYKGQLEMKRKRVEETLARIGKIETTVHATLGMDNPYEYRNKAQ 130
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
+ ++G Y++G+H +VD +C P ++++ I V YDE R
Sbjct: 131 FPIGVMDGKAILGFYKKGSHEIVDTEYCHIQSPINETIAKVMKHYIDSFGVTVYDEKKRV 190
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGS 225
G LR+V V + G+V + L+ N + + P+ +L L + G
Sbjct: 191 GLLRHVITKVG-----------FTTGEVMVVLITNGK--QLPHKKELIDL--LIEGVKGL 235
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
++ H N NVIFG++ + L GE + +G + +++P SF Q N
Sbjct: 236 KTVAH-------NINEKNTNVIFGSKTKTLHGEGYITDYIGDLKFNISPQSFFQVNPMQT 288
Query: 286 DILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
L K +Y +V D+Y G G I L L A+K + V VE+ E+ + K +
Sbjct: 289 KALYEKALEYANLTGEENVLDIYCGIGTISLFL--AQKAKKVYGVEV-VEAAIEDAKHNA 345
Query: 344 RLPKSVDGNISWHNADNSIEPL-SWLVGSDVLVVDPPRKGLDSSLVHAL 391
++ + A+ + L + ++V+VVDPPRKG + S++ +
Sbjct: 346 KINNLNNAEFHVGKAEEVVPQLYKEGIRTEVVVVDPPRKGCEESVLETI 394
>gi|182683977|ref|YP_001835724.1| RNA methyltransferase [Streptococcus pneumoniae CGSP14]
gi|182629311|gb|ACB90259.1| RNA methyltransferase, TrmA family [Streptococcus pneumoniae
CGSP14]
Length = 541
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 140/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +HN++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVVLVTTR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + +V + D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFVELKKDDVIIDAYSGIGTIGLSV--AKHVKEVYGVELIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K S L K + + A+N+++ WL + V++VDPPRKGL S + A
Sbjct: 342 SQKNAS-LNKITNAHYVCDTAENAMK--KWLKEGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|154685168|ref|YP_001420329.1| hypothetical protein RBAM_007130 [Bacillus amyloliquefaciens FZB42]
gi|154351019|gb|ABS73098.1| YefA [Bacillus amyloliquefaciens FZB42]
Length = 464
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/355 (23%), Positives = 154/355 (43%), Gaps = 46/355 (12%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDF-------TFDSCRLYGWRCR 103
CP ++ C GC + + ++ + D + IG L+ T + +R +
Sbjct: 77 CPIYKQCGGCQLQHMTYEGQLLFKQKQVKDVLERIGKLNLSKVIVHPTLGMEDPWNYRNK 136
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A++ V + G YQ+ +H+++D+ C + + AV+ ++ V+ Y+E+
Sbjct: 137 AQVPVGEREGGLVAGFYQQRSHDIIDMSACLIQQSKNDEAVQAVKDICTSYGVKAYNEER 196
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL--ESLAEFLWR 221
G LR++ + RY ++ +V+ +R P+ K+ + A+F
Sbjct: 197 HKGWLRHIMV-------------RYGVVTGEMMIVFITRTSDFPHKAKIIEDITAQF--- 240
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ S+ N + NVIFGN + GE ++ +G + +++ SF Q N
Sbjct: 241 --------PHVKSIVQNINPNKTNVIFGNETNVIWGEEYIYDLIGDVKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L K +Y +V D Y G G I L L A++ + V VEI E+ +
Sbjct: 293 PEQTKVLYDKALEYAELQGEETVIDAYCGIGTISLFL--AKQAKKVYGVEIVPEA-IEDA 349
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
K + L + + A+ I W + +D LVVDPPRKG D +L+ +
Sbjct: 350 KRNAELNGITNAEFAVGEAETVIP--KWYKEGITADTLVVDPPRKGCDEALLRTI 402
>gi|429504179|ref|YP_007185363.1| RNA methyltransferase [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
gi|429485769|gb|AFZ89693.1| putative RNA methyltransferase [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
Length = 464
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/355 (23%), Positives = 153/355 (43%), Gaps = 46/355 (12%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDF-------TFDSCRLYGWRCR 103
CP ++ C GC + + ++ + D + IG LD T + +R +
Sbjct: 77 CPIYKQCGGCQLQHMTYEGQLLFKQKQVKDVLERIGKLDLSNVTVHPTLGMEDPWNYRNK 136
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A++ V + G YQ+ +H+++D+ C + + AV+ ++ V+ Y+E+
Sbjct: 137 AQVPVGEREGGLVAGFYQQRSHDIIDMSACLIQQSKNDEAVQAVKDICASYGVKAYNEER 196
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL--ESLAEFLWR 221
G LR++ + RY ++ +V+ +R P+ K+ + A+F
Sbjct: 197 HKGWLRHIMV-------------RYGVVTGEMMIVFITRTSDFPHKAKIIEDITAQF--- 240
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ S+ N + NVIFGN + GE ++ +G + +++ SF Q N
Sbjct: 241 --------PHVTSIVQNINPNKTNVIFGNETNVIWGEEYIYDLIGDVKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L K +Y +V D Y G G I L L A++ + V VEI E+ +
Sbjct: 293 PEQTKVLYDKALEYAELQGEETVIDAYCGIGTISLFL--AKQAKKVYGVEIVPEA-IEDA 349
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
K + L + + + I W + +D LVVDPPRKG D +L+ +
Sbjct: 350 KRNAELNGITNAEFAVGETETVIP--KWYEEGITADTLVVDPPRKGCDEALLRTI 402
>gi|408355817|ref|YP_006844348.1| RNA methyltransferase [Amphibacillus xylanus NBRC 15112]
gi|407726588|dbj|BAM46586.1| putative RNA methyltransferase [Amphibacillus xylanus NBRC 15112]
Length = 460
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 88/312 (28%), Positives = 138/312 (44%), Gaps = 59/312 (18%)
Query: 100 WRCRAKLAV-RGTSTSPLI-GLYQEGTHNVVD-IPHCKAHHPRINAAVELLRQGIKELNV 156
WR R K+ + G LI G Y+ +H+++D + C + V+++R+ EL +
Sbjct: 130 WRYRNKVQIPVGEKDGKLITGFYRPRSHDIIDEMERCIVTSEVNDDLVDIVREIANELGI 189
Query: 157 EPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLA 216
Y+E+ G LR++ M T NT Q LV +R K P D
Sbjct: 190 PAYNEETHRGVLRHI-MVRTGENTG------------QTMLVIITRTNKIPKQD------ 230
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
EF+ R ++ I S+ N NVI G + + L GE ++ +G + +++ S
Sbjct: 231 EFIQR---ILEKQPNITSIMHNVNPDRTNVILGKKIKCLWGEAYIYDTIGDVKFAISALS 287
Query: 277 FGQANTRAFDILLRKLQKY--VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q N + +L K +Y + G +V D Y G G I L L A+K + V VEI
Sbjct: 288 FYQINPKQTKVLYDKALEYANLTGGETVIDAYCGIGSISLFL--AQKAKKVYGVEI---- 341
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPP 379
V + + N ++ DN+ ++VG DV+VVDPP
Sbjct: 342 -------VPQAIQDAKKNAKLNDMDNT----EFIVGQAEEVMPAWKENGLKPDVIVVDPP 390
Query: 380 RKGLDSSLVHAL 391
RKG D +L+HA+
Sbjct: 391 RKGCDEALLHAM 402
>gi|421060616|ref|ZP_15523071.1| RNA methyltransferase, TrmA family, partial [Pelosinus fermentans
B3]
gi|392455922|gb|EIW32692.1| RNA methyltransferase, TrmA family, partial [Pelosinus fermentans
B3]
Length = 387
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 92/377 (24%), Positives = 152/377 (40%), Gaps = 69/377 (18%)
Query: 50 CALQCPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF-TFDSCRLYGWR 101
C +C + C GC + L R ++D T K ++ T + + +R
Sbjct: 1 CQPRCSIYYDCGGCQLQHVAYNEQLILKRQTVIDAVTRIGKINDVIIHPTIGAENSWYYR 60
Query: 102 CRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDE 161
+ + + + +G + +GTHN+++ HC H N + L++ + EL + YDE
Sbjct: 61 NKMQFPIGTVNGKVAVGCFAQGTHNIINTEHCYIQHEANNQVAQALQEIVTELGISTYDE 120
Query: 162 DDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
G +R+V V T ++ +V + + P+ D++ +A
Sbjct: 121 RTGQGTMRHVLGRVGTATD-------------EVMVVLVTATSELPHKDRI--IAHL--- 162
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
R R + SV N ++ NVI GNR L GE + +G ++ SF Q N
Sbjct: 163 ----RQRVPKLVSVIQNINSNKTNVILGNRTITLWGENYITDTLGEFTFHISARSFFQVN 218
Query: 282 TRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
T+ ++L K +Y +V D Y G G I L L AR + V +EI
Sbjct: 219 TKQAEVLYNKAVEYAGLSGEETVIDAYCGTGTITLFL--ARHAKKVYGIEIVA------- 269
Query: 340 KTVSRLPKSVDGNISWHNAD-NSIEPLSWLVGS---------------DVLVVDPPRKGL 383
P D + HNA N + + ++VG V+VVDPPR G
Sbjct: 270 ------PAIRD---AQHNAQMNQVSNVEFIVGDAVDSMPKMFKEGIRPQVIVVDPPRAGC 320
Query: 384 DSSLVHALQSIGSAERK 400
D + L++ + E K
Sbjct: 321 DKLV---LETFAAMEAK 334
>gi|270291082|ref|ZP_06197305.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pediococcus
acidilactici 7_4]
gi|270280478|gb|EFA26313.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pediococcus
acidilactici 7_4]
Length = 455
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 158/325 (48%), Gaps = 37/325 (11%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR G ++ G+H++V I P I+ + +R ++E +EP
Sbjct: 129 GYRNKAQVPVRKVKGQLATGFFKRGSHDLVPIEDFYIQDPVIDQVILKVRDILREYQIEP 188
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++ G +R ++ R+G++ + L+ +R P+ L+ +AE
Sbjct: 189 YDEINQRGVVR-----------NIMVRRGRRSGEIMVVLI--TRTSSVPH---LDEIAEA 232
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ + G + SV N NVI G R L GE+ + + G ++ SF
Sbjct: 233 IHQIDG-------VVSVIQNINPKQTNVIMGKEDRLLAGESVIHDELLGQKFIISAHSFY 285
Query: 279 QAN----TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLA-AARKCRSVKCV-EINK 332
Q N + + + ++K + +V D+Y+G G I L++A AA+K V+ V E +
Sbjct: 286 QVNPVQTEKLYQLAIKKAG--LTGKETVLDVYSGIGTISLAMAQAAKKVYGVEIVKEAVQ 343
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQ 392
+++++ + ++ K V G A E + DV+VVDPPRKGLD S++ A
Sbjct: 344 DAKVNAVQNQAKNVKFVVGKAEDQMAKWQAEGMQ----PDVVVVDPPRKGLDESVIDA-- 397
Query: 393 SIGSAERKAKSLSESSSSMVKEEKR 417
++ A ++ +S + +++V++ R
Sbjct: 398 TVAMAPKRVVYVSCNPATLVRDIDR 422
>gi|423455958|ref|ZP_17432811.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG5X1-1]
gi|401133382|gb|EJQ41013.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG5X1-1]
Length = 459
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 89/358 (24%), Positives = 158/358 (44%), Gaps = 47/358 (13%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF---TFDSCRLYGWRCR 103
C ++ C GC + N R I+V +A + + + L + T + +R +
Sbjct: 80 CSVYEECGGCQLQHLDYKEQLNQKRDIVV-QAFEKYMNDSLEEKIRPTLGMENPWHYRNK 138
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
++L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E
Sbjct: 139 SQLQVGRKDEKVITGLYKQNSHQLIDISHCIIQHKATNEATKVVRRILEKLNVSIYNEKK 198
Query: 164 RTGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
+ G +R + + AV T G+VQ+TL+ + E+ PN D+ +AE
Sbjct: 199 QKGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKDQF--IAEV--- 238
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ----QKQMPSVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLN 294
Query: 282 TRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L + +K + + D Y G G IGL L A V+ +++ E+ +
Sbjct: 295 PEQTIVLYDEAKKAAALTGNEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIEDAK 352
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
K R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 353 KNAKRHGFT---NTKYEAGKAEQWLPKWVKEGWSPDVIVVDPPRTGCDDKLLETILKV 407
>gi|443633608|ref|ZP_21117785.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus subtilis
subsp. inaquosorum KCTC 13429]
gi|443346402|gb|ELS60462.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus subtilis
subsp. inaquosorum KCTC 13429]
Length = 466
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 87/376 (23%), Positives = 159/376 (42%), Gaps = 81/376 (21%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVD----------EATDFFKSIGLLDFTFDSCR 96
CP ++ C GC + + R I++ E + ++IG+ +
Sbjct: 82 CPVYEQCGGCQLQHLAYSQQLREKRDIVIQSLERHTKLKIENMEIKETIGMDN------- 134
Query: 97 LYGWRCRAKLAV-RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELN 155
+ +R +++ + R S S + GLY +H++V I C HP N ++R+ +++ N
Sbjct: 135 PWNYRNKSQFQIGRSQSGSIIAGLYGLDSHDIVPIKDCVVQHPATNKTTGIVRRILEDFN 194
Query: 156 VEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESL 215
V Y+E R GD+R + V + G+VQ+ LV + E P+ +++
Sbjct: 195 VSVYNERKRKGDVRTIVTRVG-----------FETGEVQVVLV--TAKETLPHKEEIVKA 241
Query: 216 AEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPS 275
+ R + S+ N + +VIFG + + L G+T E +G + L+
Sbjct: 242 IQ---------KRLPEVKSIIQNVNGAKTSVIFGEKTKPLAGKTVIQEVLGDVSFELSAR 292
Query: 276 SFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
+F Q N L +++K V D Y G G IG+ +A K V+ +++ KE
Sbjct: 293 AFFQLNPEQTVKLYDEVKKAAQLTGKEKVVDAYCGVGTIGMWVADGAK--EVRGMDVIKE 350
Query: 334 SQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDP 378
S +K N H N+ +++ G+ DV++VDP
Sbjct: 351 SIDDAKK-----------NAKKHGMTNA----TYVTGTAEHWLPKWTKEGFRPDVVIVDP 395
Query: 379 PRKGLDSSLVHALQSI 394
PR G DS+ + ++ +
Sbjct: 396 PRTGCDSTFLDTIKKV 411
>gi|226310579|ref|YP_002770473.1| 23S rRNA (uracil-5-)-methyltransferase [Brevibacillus brevis NBRC
100599]
gi|226093527|dbj|BAH41969.1| probable 23S rRNA (uracil-5-)-methyltransferase [Brevibacillus
brevis NBRC 100599]
Length = 460
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 93/368 (25%), Positives = 150/368 (40%), Gaps = 68/368 (18%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYG-------------- 99
CP + C GC+ + +D A + +S R Y
Sbjct: 82 CPVYAECGGCSLQH-------MDYAAQLASK---QEIVIESLRKYARLNQPPVAPTIGMD 131
Query: 100 ----WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELN 155
+R +A+ V + GLYQ G+H +V++ C+ H V+ +Q I+EL
Sbjct: 132 NPWSYRNKAQFQVGKEKGKLIAGLYQTGSHKLVNLEGCQVQHEATTKIVQTAKQIIEELG 191
Query: 156 VEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESL 215
+ YDE RTG +R ++ A + G+ Q+TLV +P +++ L
Sbjct: 192 IPIYDEKKRTGVIR-----------TIVARVAFATGETQLTLV-----TATPEIPRVKEL 235
Query: 216 AEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPS 275
R+R + + N +++FG++ L G+ E +G + L+
Sbjct: 236 LLE------LRTRLPELVGIAQNVNNQKTSLVFGDKTVSLWGKASIAEKLGELSFDLSAR 289
Query: 276 SFGQANTRAFDILLRKLQKYVPYGASVT------DLYAGAGVIGLSLAAARKCRSVKCVE 329
+F Q N +KL K V A +T DLY G G IGL LA R V+ +E
Sbjct: 290 AFFQLNPEQ----TQKLYKQVKTAAGLTGKELVLDLYCGTGTIGLWLAPY--AREVRGIE 343
Query: 330 INKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSS 386
+ E+ + R + N S+H + W DV+VVDPPR GLD +
Sbjct: 344 LIPEAVEDANRNAER---NQAANASFHVGRAEVLMPKWAKQGTRPDVVVVDPPRTGLDDA 400
Query: 387 LVHALQSI 394
L+ +L +
Sbjct: 401 LIRSLLDV 408
>gi|323351306|ref|ZP_08086962.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
VMC66]
gi|322122530|gb|EFX94241.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
VMC66]
Length = 469
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 85/327 (25%), Positives = 152/327 (46%), Gaps = 42/327 (12%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + G +++ +H+++ I P I+ + R ++ +++P
Sbjct: 138 GYRNKAQVPVRRVNGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVIIFTRDLLRRFDLKP 197
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R +L + +G++ + LV P ++E L E
Sbjct: 198 YDEQEKTGLIR-----------NLVVRRGHYSGEIMVILVTTR-----PKIFRVEQLME- 240
Query: 219 LWRNGGSRSREHY--IHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
R E + I S+ N N IFG WR L G+ + + G D ++ +
Sbjct: 241 -------RLTEAFPAIKSIMQNINDQPGNAIFGKDWRTLYGQDYITDRMLGNDFQISGPA 293
Query: 277 FGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q NT + L + + + V D Y+G G IGLS+ A+ + V VE+ E+
Sbjct: 294 FYQVNTEMAEKLYQTAIDFSELTSDDVVLDAYSGIGTIGLSV--AKHVKEVYGVEVIPEA 351
Query: 335 QLSFEKTVSRLPKSVDG--NISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVH 389
+ +K +++G N S+ A +WL + +DV++VDPPRKGL S +
Sbjct: 352 VENSQKNA-----AINGITNASYVCAPAEEAIQNWLKEGIQADVILVDPPRKGLTESFIK 406
Query: 390 ALQSIGSAERKAKSLSESSSSMVKEEK 416
A SI +K +S + ++M ++ K
Sbjct: 407 A--SISMEPKKITYISCNVATMARDIK 431
>gi|168491923|ref|ZP_02716066.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae CDC0288-04]
gi|221231781|ref|YP_002510933.1| RNA methyltransferase [Streptococcus pneumoniae ATCC 700669]
gi|415698371|ref|ZP_11457144.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 459-5]
gi|415749428|ref|ZP_11477372.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SV35]
gi|415752112|ref|ZP_11479223.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SV36]
gi|418123300|ref|ZP_12760234.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA44378]
gi|418127887|ref|ZP_12764783.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae NP170]
gi|418137064|ref|ZP_12773906.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA11663]
gi|419473094|ref|ZP_14012945.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA13430]
gi|421231798|ref|ZP_15688442.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2080076]
gi|183573799|gb|EDT94327.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae CDC0288-04]
gi|220674241|emb|CAR68776.1| putative RNA methyltransferase [Streptococcus pneumoniae ATCC
700669]
gi|353797387|gb|EHD77722.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA44378]
gi|353800348|gb|EHD80662.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae NP170]
gi|353901691|gb|EHE77223.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA11663]
gi|379552601|gb|EHZ17690.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA13430]
gi|381309808|gb|EIC50641.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SV36]
gi|381317023|gb|EIC57759.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 459-5]
gi|381317722|gb|EIC58447.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SV35]
gi|395595827|gb|EJG56053.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2080076]
Length = 543
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 83/325 (25%), Positives = 146/325 (44%), Gaps = 36/325 (11%)
Query: 81 FFKSIGLLDF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAH 136
+K G+ D T D +R +A++ VR + G +++ +HN++ +
Sbjct: 103 LYKIAGIADVEVAETLDMEHPVKYRNKAQVPVRRVNGVLETGFFRKNSHNLMPLEDFFIQ 162
Query: 137 HPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQIT 196
P I+ V LR ++ +++PYDE +++G +R +L + +G++ +
Sbjct: 163 DPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIR-----------NLVVRRGHYSGQIMVV 211
Query: 197 LVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLL 256
LV P +++ L E + + I SV N N IFG WR L
Sbjct: 212 LVTTR-----PKVFRVDQLIEQVIKQFPE------IVSVMQNINDQNTNAIFGKEWRTLY 260
Query: 257 GETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGL 314
G+ + + G D +A +F Q NT + L + + + D Y+G G IGL
Sbjct: 261 GQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVIIDAYSGIGTIGL 320
Query: 315 SLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGS 371
S+ A+ + V VE+ E+ + +K S L K + + A+N+++ WL +
Sbjct: 321 SV--AKHVKEVYGVELIPEAVENSQKNAS-LNKITNAHYVCDTAENAMK--KWLKEGIQP 375
Query: 372 DVLVVDPPRKGLDSSLVHALQSIGS 396
V++VDPPRKGL S + A G+
Sbjct: 376 TVILVDPPRKGLTESFIKASAQTGA 400
>gi|417315400|ref|ZP_12102080.1| putative RNA methyltransferase [Listeria monocytogenes J1816]
gi|328466504|gb|EGF37647.1| putative RNA methyltransferase [Listeria monocytogenes J1816]
Length = 460
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 156/353 (44%), Gaps = 40/353 (11%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKL 106
C + C GC+ + + ++ + K IG L+ T + +R ++++
Sbjct: 76 CAVYSKCGGCSLQHLSYEGQLAFKRNQVEETMKRIGKLNVDVPETLGMENPWRYRNKSQV 135
Query: 107 AVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTG 166
V + G YQ+ +H ++D+ C H+ + + AV+ R+ + + EPYDE G
Sbjct: 136 PVGFVNGKLTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDEQTGKG 195
Query: 167 DLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRNGGS 225
D+R++ R+ + Q+ +V + E+ P +++ L E L
Sbjct: 196 DIRHIMT-------------RFAHTTGQLMIVLVTTKERMPFKEEIVRELVEQLE----- 237
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
+ S+ N NVIFG+R + L G+ + + GI +++ SF Q N
Sbjct: 238 ------LTSIVQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPIQT 291
Query: 286 DILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
++L ++ +V D Y G G I L L A+K + V VEI ++ + + +
Sbjct: 292 EVLYQQAIDAAELTGEETVIDAYCGIGSISLCL--AKKAKHVYGVEIVDQA-IQDARANA 348
Query: 344 RLPKSVDGNISWHNADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHALQSI 394
L + + A+ I P + G +DVLVVDPPRKG D L+ + ++
Sbjct: 349 ELNELANTTFETGKAEEVI-PAWYKAGIVADVLVVDPPRKGCDEKLLETILAM 400
>gi|449093509|ref|YP_007426000.1| putative RNA methyltransferase [Bacillus subtilis XF-1]
gi|449027424|gb|AGE62663.1| putative RNA methyltransferase [Bacillus subtilis XF-1]
Length = 466
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 86/369 (23%), Positives = 156/369 (42%), Gaps = 67/369 (18%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIV---DEATDFFKSIGLLDFTFDSCRLYGWRCR 103
CP ++ C GC + + R I++ + T F + T + +R +
Sbjct: 82 CPVYEQCGGCQLQHLAYSQQLREKRDIVIQSLERHTKFKVENMEIKETIGMDNPWNYRNK 141
Query: 104 AKLAV-RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
++ + R S S + GLY +H++V I C HP N ++R+ +++ +V Y+E
Sbjct: 142 SQFQIGRSQSGSIIAGLYGLDSHDIVPIKDCIVQHPATNKTTGIVRRILEDFDVSVYNER 201
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
R GD+R + V + G+VQ+ LV + E P+ +++ +
Sbjct: 202 KRKGDVRTIVTRVG-----------FETGEVQVVLV--TAKETLPHKEEIVKAIQ----- 243
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
R + S+ N + +VIFG + + L G+T E +G + L+ +F Q N
Sbjct: 244 ----KRLPEVTSIIQNVNGAKTSVIFGEKTKQLAGKTVIQEVLGDVSFELSARAFFQLNP 299
Query: 283 RAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
L +++K V D Y G G IG+ +A K V+ +++ KES +K
Sbjct: 300 EQTVKLYDEVKKAAQLTGKEKVVDAYCGVGTIGMWVADGAK--EVRGMDVIKESIDDAKK 357
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPPRKGLDS 385
N H N+ +++ G+ DV++VDPPR G DS
Sbjct: 358 -----------NAKKHGMANA----TYVTGTAEHWLPKWTKEGFRPDVVIVDPPRTGCDS 402
Query: 386 SLVHALQSI 394
+ + ++ +
Sbjct: 403 TFLDTIKKV 411
>gi|296331894|ref|ZP_06874359.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305673506|ref|YP_003865178.1| RNA methyltransferase [Bacillus subtilis subsp. spizizenii str.
W23]
gi|296150972|gb|EFG91856.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305411750|gb|ADM36869.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii
str. W23]
Length = 466
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 87/366 (23%), Positives = 154/366 (42%), Gaps = 67/366 (18%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIV---DEATDFFKSIGLLDFTFDSCRLYGWRCR 103
CP ++ C GC + + R I++ + T F + T + +R +
Sbjct: 82 CPVYEQCGGCQLQHLAYSQQLREKRDIVIQSLERHTKFKIENMEIKETIGMDNPWNYRNK 141
Query: 104 AKLAV-RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
++ + R S S + GLY +H++V I C HP N ++R+ +++ NV Y+E
Sbjct: 142 SQFQIGRSQSGSIIAGLYGLDSHDIVPIKDCVVQHPATNKTTGIVRRILEDFNVSVYNER 201
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
R GD+R + V + G+VQ+ LV + E P+ +++ +
Sbjct: 202 KRKGDVRTIVTRVG-----------FETGEVQVVLV--TAKETLPHKEEIVKAIQ----- 243
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
R + S+ N + +VIFG + + L G+T E +G + L+ +F Q N
Sbjct: 244 ----KRLPEVKSIIQNVNGAKTSVIFGEKTKPLAGKTVIQEVLGDVSFELSARAFFQLNP 299
Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
L +++K V D Y G G IG+ +A K V+ +++ KES +K
Sbjct: 300 EQTVKLYDEVKKAAQLTGKERVVDAYCGVGTIGMWVADGAK--EVRGMDVIKESIDDAKK 357
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPPRKGLDS 385
N H N+ +++ G+ DV++VDPPR G DS
Sbjct: 358 -----------NAKKHGMTNA----TYVTGTAEHWLPKWTKEGFRPDVVIVDPPRTGCDS 402
Query: 386 SLVHAL 391
+ + +
Sbjct: 403 TFLDTI 408
>gi|421873815|ref|ZP_16305425.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Brevibacillus
laterosporus GI-9]
gi|372457155|emb|CCF14974.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Brevibacillus
laterosporus GI-9]
Length = 550
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 86/301 (28%), Positives = 136/301 (45%), Gaps = 38/301 (12%)
Query: 100 WRCRAKLAV-RGTSTSPLIG-LYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
WR R K V G LIG Y E +H+++DI C H + V +++ + L +E
Sbjct: 222 WRYRNKAQVPIGEENGALIGGFYAEKSHDIIDINECLIQHQANDEVVATVKRIAERLGIE 281
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
PY+E TG LR+V V + G + + L+ + P ++L L
Sbjct: 282 PYNEVKHTGLLRHVVAKVGA-----------KTGDLMVVLI--TTEAFLPEREQLIQLI- 327
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
R+ + S+ N NVIFG++ L G+ ++ +G I +++ SF
Sbjct: 328 --------RAELPGVKSIVQNINERRTNVIFGDQTFTLWGDDVIYDYIGPIKFAISARSF 379
Query: 278 GQANTRAFDILLRKLQKY--VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q N D+L K +Y + +V D Y G G I L L A+K + V VEI E+
Sbjct: 380 YQVNPEQTDVLYSKTLEYAGLEGNETVIDAYCGIGTISLFL--AQKAKRVYGVEIVPEAI 437
Query: 336 LSFEKTVSRLPKSVDG--NISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHA 390
+K ++G N+S+ + +W V +DV+VVDPPRKG D +L+
Sbjct: 438 ADAKKNA-----ELNGLENVSFEVGPAEVVIPNWRKQGVVADVIVVDPPRKGCDEALLTT 492
Query: 391 L 391
+
Sbjct: 493 I 493
>gi|394992876|ref|ZP_10385645.1| putative RNA methyltransferase [Bacillus sp. 916]
gi|393806317|gb|EJD67667.1| putative RNA methyltransferase [Bacillus sp. 916]
Length = 459
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/355 (23%), Positives = 153/355 (43%), Gaps = 46/355 (12%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDF-------TFDSCRLYGWRCR 103
CP ++ C GC + + ++ + D + IG L T + +R +
Sbjct: 77 CPIYKQCGGCQLQHMTYEGQLLFKQKQVKDVLERIGKLALSNVTVHPTLGMEDPWNYRNK 136
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A++ V + G YQ+ +H+++D+ C + + AV+ ++ V+ Y+E+
Sbjct: 137 AQVPVGEREGGLVAGFYQQRSHDIIDMSACMIQQSKNDEAVQAVKDICASYGVKAYNEER 196
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL--ESLAEFLWR 221
G LR++ + RY ++ +V+ +R P+ K+ + A+F
Sbjct: 197 HKGWLRHIMV-------------RYGVVTGEMMIVFITRTSDFPHKAKIIEDITAQF--- 240
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ S+ N + NVIFGN + GE ++ +G + +++ SF Q N
Sbjct: 241 --------PHVKSIVQNINPNKTNVIFGNETNVIWGEEYIYDLIGDVKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L K +Y +V D Y G G I L L A++ + V VEI E+ +
Sbjct: 293 PEQTKVLYDKALEYAELQGEETVIDAYCGIGTISLFL--AKQAKKVYGVEIVPEA-IEDA 349
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
K + L + + A+ I W + +D LVVDPPRKG D +L+ +
Sbjct: 350 KRNAELNGITNAEFAVGEAETVIP--KWYEEGITADTLVVDPPRKGCDEALLRTI 402
>gi|284802195|ref|YP_003414060.1| hypothetical protein LM5578_1951 [Listeria monocytogenes 08-5578]
gi|284995337|ref|YP_003417105.1| hypothetical protein LM5923_1902 [Listeria monocytogenes 08-5923]
gi|284057757|gb|ADB68698.1| hypothetical protein LM5578_1951 [Listeria monocytogenes 08-5578]
gi|284060804|gb|ADB71743.1| hypothetical protein LM5923_1902 [Listeria monocytogenes 08-5923]
Length = 453
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 157/353 (44%), Gaps = 40/353 (11%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKL 106
C + C GC+ + ++ ++ + K IG L+ T + +R ++++
Sbjct: 76 CAVYSKCGGCSLQHLSYDGQLEFKRNQVEETMKRIGKLNVEVPETLGMENPWRYRNKSQV 135
Query: 107 AVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTG 166
V + G YQ+ +H ++D+ C H+ + + AV+ R+ + + EPYDE G
Sbjct: 136 PVGFVNGKLTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDEQTGKG 195
Query: 167 DLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRNGGS 225
D+R++ R+ + Q+ +V + E+ P +++ L E L
Sbjct: 196 DIRHIMT-------------RFAHTTGQLMIVLVTTKERMPFKEEIVRDLVEQLE----- 237
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
+ S+ N NVIFG+R + L G+ + + GI +++ SF Q N
Sbjct: 238 ------LTSIVQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPLQT 291
Query: 286 DILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
++L ++ +V D Y G G I L L A+K + V VEI ++ + + +
Sbjct: 292 EVLYQQAIDAAELTGEETVIDAYCGIGSISLCL--AKKAKHVYGVEIVDQA-IQDARANA 348
Query: 344 RLPKSVDGNISWHNADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHALQSI 394
L + + A+ I P + G +DVLVVDPPRKG D L+ + ++
Sbjct: 349 ELNELANTTFETGKAEEVI-PAWYKAGIVADVLVVDPPRKGCDEKLLETILAM 400
>gi|423473426|ref|ZP_17450168.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG6O-2]
gi|423526020|ref|ZP_17502472.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuA4-10]
gi|423556594|ref|ZP_17532897.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus MC67]
gi|401164846|gb|EJQ72178.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuA4-10]
gi|401194868|gb|EJR01836.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus MC67]
gi|402425911|gb|EJV58053.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG6O-2]
Length = 459
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 89/358 (24%), Positives = 158/358 (44%), Gaps = 47/358 (13%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVDEATDFFKSIGLLDF---TFDSCRLYGWRCR 103
C ++ C GC + N R I+V +A + + + L + T + +R +
Sbjct: 80 CSVYEECGGCQLQHLDYKEQLNQKRDIVV-QAFEKYMNDSLEEKIRPTLGMENPWHYRNK 138
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
++L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E
Sbjct: 139 SQLQVGRKDEKVITGLYKQNSHQLIDISHCIIQHKATNEATKVVRRILEKLNVSIYNEKK 198
Query: 164 RTGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
+ G +R + + AV T G+VQ+TL+ + E+ PN D+ +AE
Sbjct: 199 QKGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKDQF--IAEV--- 238
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ----QKQMPSVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLN 294
Query: 282 TRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L + +K + + D Y G G IGL L A V+ +++ E+ +
Sbjct: 295 PEQTVVLYDEAKKAAALTGNEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIEDAK 352
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
K R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 353 KNAKRHGFT---NAKYEAGKAEQWLPKWVKEGWSPDVIVVDPPRTGCDDKLLETILKV 407
>gi|169343089|ref|ZP_02864116.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens C str. JGS1495]
gi|169298999|gb|EDS81073.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens C str. JGS1495]
Length = 455
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 92/374 (24%), Positives = 160/374 (42%), Gaps = 69/374 (18%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDFTFDSCRL-----YGWRCRAK 105
C ++ C GC + ++ + + D IG LD + L + +R + +
Sbjct: 73 CSIYKRCGGCKLQHASYKAQLDFKWERVKDCVSKIGKLDPSIVKYPLGMENPWRYRNKVQ 132
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED--- 162
L + + IG + +H+++D+ C + V+L R+ I++ N+ PY+ D
Sbjct: 133 LPIGLINGEVKIGFFAPRSHDIIDMESCLIQDEIGDKVVKLTREWIEKFNIRPYNVDGEY 192
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
D G +R++ + + +V + LV N N P+ E + + +N
Sbjct: 193 DEKGIVRHIMI-----------RRGFTTNEVMVVLVTNGEN--LPHK---EEFVDLMVKN 236
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
I SV N + NVI G + L GE + +G +++P SF Q N
Sbjct: 237 IPG------IKSVIQNINSKKTNVILGLESKTLWGEDTISDYIGDFRFNISPLSFFQVNP 290
Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
++L K +Y + V D Y G G I L L ++K + V VEI
Sbjct: 291 TQTEVLYGKALEYANLTGNEEVFDAYCGTGTITLFL--SQKAKKVYGVEI---------- 338
Query: 341 TVSRLPKSVDGNISWHNA-DNSIEPLSWLVG---------------SDVLVVDPPRKGLD 384
+P+++D +W NA +N +E + + VG +DV+VVDPPRKG D
Sbjct: 339 ----IPQAIDN--AWINAKENKVENVEFFVGESEVVIPDLINKGVKADVVVVDPPRKGCD 392
Query: 385 SSLVHALQSIGSAE 398
L+ A+ +I + +
Sbjct: 393 KKLLDAITNIDAKK 406
>gi|149003890|ref|ZP_01828713.1| RNA methyltransferase, TrmA family protein [Streptococcus
pneumoniae SP14-BS69]
gi|237650085|ref|ZP_04524337.1| RNA methyltransferase [Streptococcus pneumoniae CCRI 1974]
gi|237822146|ref|ZP_04597991.1| RNA methyltransferase [Streptococcus pneumoniae CCRI 1974M2]
gi|419457411|ref|ZP_13997356.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA02254]
gi|147758120|gb|EDK65124.1| RNA methyltransferase, TrmA family protein [Streptococcus
pneumoniae SP14-BS69]
gi|379532409|gb|EHY97638.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA02254]
Length = 541
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 140/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ V LR I+ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFFIQDPVIDQVVVALRDLIRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVVLVTTR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + +V + D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFVELKKDDVIIDAYSGIGTIGLSV--AKHVKEVYGVELIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K S L K + + A+N+++ WL + V++VDPPRKGL S + A
Sbjct: 342 SQKNAS-LNKITNAHYVCDTAENAMK--KWLKEGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|422809833|ref|ZP_16858244.1| RNA methyltransferase, TrmA family [Listeria monocytogenes FSL
J1-208]
gi|378752152|gb|EHY62738.1| RNA methyltransferase, TrmA family [Listeria monocytogenes FSL
J1-208]
Length = 453
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 97/384 (25%), Positives = 165/384 (42%), Gaps = 62/384 (16%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYG----WRCRAKL 106
C + C GC+ + ++ ++ + K IG L+ D G WR R K
Sbjct: 76 CAVYSKCGGCSLQHLSYDGQLAFKRNQVEETMKRIGKLNV--DVQETLGMENPWRYRNKS 133
Query: 107 AV-----RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDE 161
V G T+ G YQ+ +H ++D+ C H+ + + AV+ R+ + + EPYDE
Sbjct: 134 QVPVGFVHGKLTA---GFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDE 190
Query: 162 DDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLW 220
GD+R++ R+ + Q+ +V + E+ P +++ + L E L
Sbjct: 191 KTGKGDIRHIMT-------------RFAHTTGQLMIVLVTTKERLPFKNEIVQDLIEQLE 237
Query: 221 RNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQA 280
+ S+ N NVIFG+R + L G+ + + GI +++ SF Q
Sbjct: 238 -----------LTSIVQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQV 286
Query: 281 NTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSF 338
N ++L ++ +V D Y G G I L L A+K + V VEI ++ +
Sbjct: 287 NPLQTEVLYQQAIDAAELTGEETVIDAYCGIGSISLCL--AKKAKHVYGVEIVDQA-IQD 343
Query: 339 EKTVSRLPKSVDGNISWHNADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHALQSI-- 394
+ + L + + A+ I P + G +DVLVVDPPRKG D L+ + ++
Sbjct: 344 ARANAELNELTNTTFETGKAEEVI-PAWYKAGIEADVLVVDPPRKGCDEKLLETILAMKP 402
Query: 395 ----------GSAERKAKSLSESS 408
G+ R K L+E
Sbjct: 403 KKVVYVSCNPGTLARDMKILTEGG 426
>gi|407795900|ref|ZP_11142857.1| RNA methyltransferase [Salimicrobium sp. MJ3]
gi|407019720|gb|EKE32435.1| RNA methyltransferase [Salimicrobium sp. MJ3]
Length = 458
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 93/357 (26%), Positives = 156/357 (43%), Gaps = 51/357 (14%)
Query: 54 CPHFQSCSGCT-HEFNLHRPIIV--DEATDFFKSIGLLDFT--FDSCRLYG-WRCRAKLA 107
CP + C GC + R + + ++ + K IG L+ + + WR R K+
Sbjct: 78 CPVYYQCGGCQLQHMSYSRQLTMKKNQVENVMKKIGHLEHVPVHEPIGMEEPWRYRNKIQ 137
Query: 108 V---RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+ + G YQ+ +HN++D+ C + V +R+ +L +E YDE+
Sbjct: 138 IPVGEKENGELKTGFYQKRSHNIIDMESCLIQDETNDGMVAAVRRIATDLGIEAYDEESH 197
Query: 165 TGDLRYVQMAVTTYNTSLPASERYRNGKV--QITLVWNSRNEKSPNSDKLESLAEFLWRN 222
G LR++ + R G+V I +V +R ++ P+ D L
Sbjct: 198 RGVLRHIMV---------------RTGQVTGDIMVVLITRTKELPHKDGLI--------- 233
Query: 223 GGSRSREHY--IHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQA 280
+ +E Y + S+ N NVI G + G+ ++++G I ++ SF Q
Sbjct: 234 --EQIKEAYPGVKSIVHNVNRDKTNVILGKETTVVYGDEYIYDSIGDIRFMISAQSFYQV 291
Query: 281 NTRAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSF 338
N L K +Y G +V D Y G G I L +A A K V VE+ E+
Sbjct: 292 NPTQTKTLYDKALEYADLRGGETVVDAYCGIGTISLFMAKAAK--KVYGVEVVGEAVKDA 349
Query: 339 EKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS----DVLVVDPPRKGLDSSLVHAL 391
+K +RL +D N+ ++ + E + W G DV+VVDPPRKG D +L+ ++
Sbjct: 350 KKN-ARL-NHID-NVEFYKG-KAEEVMPWWRGQGLRPDVIVVDPPRKGCDEALLASM 402
>gi|148988481|ref|ZP_01819928.1| RNA methyltransferase, TrmA family protein [Streptococcus
pneumoniae SP6-BS73]
gi|421211130|ref|ZP_15668113.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2070035]
gi|147926162|gb|EDK77236.1| RNA methyltransferase, TrmA family protein [Streptococcus
pneumoniae SP6-BS73]
gi|395573088|gb|EJG33679.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2070035]
Length = 543
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 83/325 (25%), Positives = 146/325 (44%), Gaps = 36/325 (11%)
Query: 81 FFKSIGLLDF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAH 136
+K G+ D T D +R +A++ VR + G +++ +HN++ +
Sbjct: 103 LYKIAGIADVEVAETLDMEHPVKYRNKAQVPVRRVNGVLETGFFRKNSHNLMPLEDFFIQ 162
Query: 137 HPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQIT 196
P I+ V LR ++ +++PYDE +++G +R +L + +G++ +
Sbjct: 163 DPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIR-----------NLVVRRGHYSGQIMVV 211
Query: 197 LVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLL 256
LV P +++ L E + + I SV N N IFG WR L
Sbjct: 212 LVTTR-----PKVFRVDQLIEQVIKQFPE------IVSVMQNINDQNTNAIFGKEWRTLY 260
Query: 257 GETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGL 314
G+ + + G D +A +F Q NT + L + + + D Y+G G IGL
Sbjct: 261 GQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVIIDAYSGIGTIGL 320
Query: 315 SLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGS 371
S+ A+ + V VE+ E+ + +K S L K + + A+N+++ WL +
Sbjct: 321 SV--AKHVKEVYGVELIPEAVENSQKNAS-LNKITNAHYVCDTAENAMK--KWLKEGIQP 375
Query: 372 DVLVVDPPRKGLDSSLVHALQSIGS 396
V++VDPPRKGL S + A G+
Sbjct: 376 TVILVDPPRKGLTESFIKASAQTGA 400
>gi|403385957|ref|ZP_10928014.1| RNA methyltransferase [Kurthia sp. JC30]
Length = 453
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 85/354 (24%), Positives = 151/354 (42%), Gaps = 43/354 (12%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDF----TFDSCRLYGWRCRAKL 106
CP F C GC + + + D + IG +D T + + +R +A++
Sbjct: 75 CPVFHQCGGCQLQHLSYEGQLAWKQKMVRDVMQRIGKIDVPVHPTKGMAQPWNYRNKAQI 134
Query: 107 AVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTG 166
P+ G Y+ +H +VD C +A + L+ + L ++PYDE + G
Sbjct: 135 PFGMNGEVPVAGFYKTKSHAIVDTERCLIQTDEADAILAGLKPKLWALGLQPYDEQTKQG 194
Query: 167 DLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSR 226
LR+V + R ++ +V ++ K P D + + L N
Sbjct: 195 QLRHVVV-------------RKARATDEVMVVLVTKKRKFPQKDAVVDVIRQLIPN---- 237
Query: 227 SREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFD 286
+ S+ N + NVIFG+ +L G +++G + ++ SF Q N +
Sbjct: 238 -----VKSIMQNVNPNNTNVIFGDETLNLWGADTIEDHIGDVRFEISARSFYQVNPIQTE 292
Query: 287 ILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR 344
+L ++ Y +V D Y G G I L L A+ + V VEI ++ ++
Sbjct: 293 VLYKQALDYAALTGEETVIDAYCGIGTISLFL--AKNAKHVMGVEIVPQAIEDAKRNA-- 348
Query: 345 LPKSVDG-NISWHNADNSIEPL-SWL---VGSDVLVVDPPRKGLDSSLVHALQS 393
+++G N ++ A + E + W +DVL+VDPPRKG D++L+ + S
Sbjct: 349 ---ALNGFNNTYFEAGPAEEVIPRWFKEGKEADVLMVDPPRKGCDNALLETILS 399
>gi|254829496|ref|ZP_05234183.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
gi|258601911|gb|EEW15236.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
Length = 453
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 86/354 (24%), Positives = 157/354 (44%), Gaps = 42/354 (11%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKL 106
C + C GC+ + ++ ++ + K IG L+ T + +R ++++
Sbjct: 76 CAVYSKCGGCSLQHLSYDGQLEFKRNQVEETMKRIGKLNVEVPETLGMENPWRYRNKSQV 135
Query: 107 AVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTG 166
V + G YQ+ +H ++D+ C H+ + + AV+ R+ + + EPYDE G
Sbjct: 136 PVGFVNGKLTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILVKYGTEPYDEQTGKG 195
Query: 167 DLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRNGGS 225
D+R++ R+ + Q+ +V + E+ P +++ L E L
Sbjct: 196 DIRHIMT-------------RFAHTTGQLMIVLVTTKERMPFKEEIVRDLVEQLE----- 237
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
+ S+ N NVIFG+R + L G+ + + GI +++ SF Q N
Sbjct: 238 ------LTSIVQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPLQT 291
Query: 286 DILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
++L ++ +V D Y G G I L L A+K + V VEI ++ + + +
Sbjct: 292 EVLYQQAIDAAELTGEETVIDAYCGIGSISLCL--AKKAKHVYGVEIVDQA-IQDARANA 348
Query: 344 RLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
L + + A+ I SW + +DVLVVDPPRKG D L+ + ++
Sbjct: 349 ELNELANTTFETGKAEEVIP--SWYKAGIVADVLVVDPPRKGCDEKLLETILAM 400
>gi|375361374|ref|YP_005129413.1| TrmA family RNA methyltransferase [Bacillus amyloliquefaciens
subsp. plantarum CAU B946]
gi|371567368|emb|CCF04218.1| RNA methyltransferase, TrmA family [Bacillus amyloliquefaciens
subsp. plantarum CAU B946]
Length = 461
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 84/355 (23%), Positives = 154/355 (43%), Gaps = 46/355 (12%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDF-------TFDSCRLYGWRCR 103
CP ++ C GC + + ++ + D + IG LD T + +R +
Sbjct: 77 CPIYKQCGGCQLQHMTYEGQLLFKQKQVKDVLERIGKLDLSKVIVHPTLGMEDPWNYRNK 136
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A++ V + G YQ+ +H+++D+ C + + AV+ ++ V+ Y+E+
Sbjct: 137 AQVPVGEREGGLVAGFYQQRSHDIIDMSACLIQQSKNDEAVQAVKDICAAYGVKAYNEER 196
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL--ESLAEFLWR 221
G LR++ + RY ++ +V+ +R P+ K+ + A+F
Sbjct: 197 HKGWLRHIMV-------------RYGVVTGEMMIVFITRTGDFPHKAKIIEDITAQF--- 240
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ S+ N + NVIFG+ + GE ++ +G + +++ SF Q N
Sbjct: 241 --------PHVKSIVQNINPNKTNVIFGDETNVIWGEEYIYDLIGDVKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L K +Y +V D Y G G I L L A++ + V VEI E+ +
Sbjct: 293 PEQTKVLYDKALEYAELQGEETVIDAYCGIGTISLFL--AKQAKKVYGVEIVPEA-IEDA 349
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
K + L + + A+ I W + +D LVVDPPRKG D +L+ +
Sbjct: 350 KRNAELNGITNAEFAVGEAETVIP--KWYEEGITADTLVVDPPRKGCDEALLRTI 402
>gi|386044059|ref|YP_005962864.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
10403S]
gi|404411052|ref|YP_006696640.1| TrmA/RumA/YefA-family RNA methyltransferase [Listeria monocytogenes
SLCC5850]
gi|345537293|gb|AEO06733.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
10403S]
gi|404230878|emb|CBY52282.1| RNA methyltransferase, TrmA/RumA/YefA-family [Listeria
monocytogenes SLCC5850]
Length = 453
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 86/354 (24%), Positives = 156/354 (44%), Gaps = 42/354 (11%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKL 106
C + C GC+ + ++ ++ + K IG L+ T + +R ++++
Sbjct: 76 CAVYSKCGGCSLQHLSYDGQLEFKRNQVEETMKRIGKLNVEVPETLGMENPWRYRNKSQV 135
Query: 107 AVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTG 166
V + G YQ+ +H ++D+ C H+ + + AV+ R+ + + EPYDE G
Sbjct: 136 PVGFVNGKLAAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDEQTGKG 195
Query: 167 DLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRNGGS 225
D+R++ R+ Q+ +V + E+ P +++ L E L
Sbjct: 196 DIRHIMT-------------RFARTTGQLMIVLVTTKERMPFKEEIVRDLVEQLE----- 237
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
+ S+ N NVIFG+R + L G+ + + GI +++ SF Q N
Sbjct: 238 ------LTSIVQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPLQT 291
Query: 286 DILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
++L ++ +V D Y G G I L L A+K + V VEI ++ + + +
Sbjct: 292 EVLYQQAIDAAELTGEETVIDAYCGIGSISLCL--AKKAKHVYGVEIVDQA-IQDARANA 348
Query: 344 RLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
L + + A+ I SW + +DVLVVDPPRKG D L+ + ++
Sbjct: 349 ELNELANTTFETGKAEEVIP--SWYKAGIVADVLVVDPPRKGCDEKLLETILAM 400
>gi|46907981|ref|YP_014370.1| RNA methyltransferase [Listeria monocytogenes serotype 4b str.
F2365]
gi|226224354|ref|YP_002758461.1| hypothetical RNA methyltransferase [Listeria monocytogenes serotype
4b str. CLIP 80459]
gi|254992256|ref|ZP_05274446.1| hypothetical RNA methyltransferase [Listeria monocytogenes FSL
J2-064]
gi|386732490|ref|YP_006205986.1| putative RNA methyltransferase [Listeria monocytogenes 07PF0776]
gi|405752976|ref|YP_006676441.1| TrmA/RumA/YefA-family RNA methyltransferase [Listeria monocytogenes
SLCC2378]
gi|406704533|ref|YP_006754887.1| RNA methyltransferase, TrmA/RumA/YefA-family [Listeria
monocytogenes L312]
gi|424714628|ref|YP_007015343.1| Uncharacterized RNA methyltransferase LMOf2365_1776 [Listeria
monocytogenes serotype 4b str. LL195]
gi|51316673|sp|Q71YR7.1|Y1776_LISMF RecName: Full=Uncharacterized RNA methyltransferase LMOf2365_1776
gi|46881251|gb|AAT04547.1| RNA methyltransferase, TrmA family [Listeria monocytogenes serotype
4b str. F2365]
gi|225876816|emb|CAS05525.1| Putative hypothetical RNA methyltransferase [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|384391248|gb|AFH80318.1| putative RNA methyltransferase [Listeria monocytogenes 07PF0776]
gi|404222176|emb|CBY73539.1| RNA methyltransferase, TrmA/RumA/YefA-family [Listeria
monocytogenes SLCC2378]
gi|406361563|emb|CBY67836.1| RNA methyltransferase, TrmA/RumA/YefA-family [Listeria
monocytogenes L312]
gi|424013812|emb|CCO64352.1| Uncharacterized RNA methyltransferase LMOf2365_1776 [Listeria
monocytogenes serotype 4b str. LL195]
Length = 453
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 157/353 (44%), Gaps = 40/353 (11%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKL 106
C + C GC+ + ++ ++ + K IG L+ T + +R ++++
Sbjct: 76 CAVYSKCGGCSLQHLSYDGQLEFKRNQVEETMKRIGKLNVEVPETLGMENPWRYRNKSQV 135
Query: 107 AVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTG 166
V + G YQ+ +H ++D+ C H+ + + AV+ R+ + + EPYDE G
Sbjct: 136 PVGFVNGKLTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDEQTGKG 195
Query: 167 DLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRNGGS 225
D+R++ R+ + Q+ +V + E+ P +++ L E L
Sbjct: 196 DIRHIMT-------------RFAHTTGQLMIVLVTTKERMPFKEEIVRELVEQLE----- 237
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
+ S+ N NVIFG+R + L G+ + + GI +++ SF Q N
Sbjct: 238 ------LTSIVQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPIQT 291
Query: 286 DILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
++L ++ +V D Y G G I L L A+K + V VEI ++ + + +
Sbjct: 292 EVLYQQAIDAAELTGEETVIDAYCGIGSISLCL--AKKAKHVYGVEIVDQA-IQDARANA 348
Query: 344 RLPKSVDGNISWHNADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHALQSI 394
L + + A+ I P + G +DVLVVDPPRKG D L+ + ++
Sbjct: 349 ELNELANTTFETGKAEEVI-PAWYKAGIVADVLVVDPPRKGCDEKLLETILAM 400
>gi|422878542|ref|ZP_16925008.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK1059]
gi|422928392|ref|ZP_16961334.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
ATCC 29667]
gi|422931368|ref|ZP_16964299.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK340]
gi|332366968|gb|EGJ44708.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK1059]
gi|339616716|gb|EGQ21357.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
ATCC 29667]
gi|339619668|gb|EGQ24243.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK340]
Length = 469
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 84/327 (25%), Positives = 153/327 (46%), Gaps = 42/327 (12%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + G +++ +H+++ I P I+ + R ++ +++P
Sbjct: 138 GYRNKAQVPVRRVNGQLETGFFRKNSHDLLPIEDFYIQDPIIDQVILFTRDLLRRFDLKP 197
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R +L + +G++ + LV P ++E L +
Sbjct: 198 YDEQEKTGLIR-----------NLVVRRGHYSGEIMVILVTTR-----PKIFRVEQLMD- 240
Query: 219 LWRNGGSRSREHY--IHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
R E + I S+ N N IFG WR L G+ + + G D ++ +
Sbjct: 241 -------RLTEAFPAIKSIMQNINDQPGNAIFGKDWRTLYGQDYITDRMLGNDFQISGPA 293
Query: 277 FGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q NT + L + + + V D Y+G G IGLS+ A++ + V VE+ E+
Sbjct: 294 FYQVNTEMAEKLYQTAIDFSELTSDDVVLDAYSGIGTIGLSV--AKQVKQVYGVEVIPEA 351
Query: 335 QLSFEKTVSRLPKSVDG--NISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVH 389
+ SR +++G N S+ A +WL + +DV++VDPPRKGL S +
Sbjct: 352 VEN-----SRKNAAINGITNASYVCAPAEEAIQNWLKEGIQADVILVDPPRKGLTESFIK 406
Query: 390 ALQSIGSAERKAKSLSESSSSMVKEEK 416
A S+ +K +S + ++M ++ K
Sbjct: 407 A--SVSMKPKKITYISCNVATMARDIK 431
>gi|254932803|ref|ZP_05266162.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
gi|405750101|ref|YP_006673567.1| TrmA/RumA/YefA-family RNA methyltransferase [Listeria monocytogenes
ATCC 19117]
gi|405755910|ref|YP_006679374.1| TrmA/RumA/YefA-family RNA methyltransferase [Listeria monocytogenes
SLCC2540]
gi|424823511|ref|ZP_18248524.1| hypothetical protein LMOSA_26720 [Listeria monocytogenes str. Scott
A]
gi|293584356|gb|EFF96388.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
gi|332312191|gb|EGJ25286.1| hypothetical protein LMOSA_26720 [Listeria monocytogenes str. Scott
A]
gi|404219301|emb|CBY70665.1| RNA methyltransferase, TrmA/RumA/YefA-family [Listeria
monocytogenes ATCC 19117]
gi|404225110|emb|CBY76472.1| RNA methyltransferase, TrmA/RumA/YefA-family [Listeria
monocytogenes SLCC2540]
Length = 453
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 157/353 (44%), Gaps = 40/353 (11%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKL 106
C + C GC+ + ++ ++ + K IG L+ T + +R ++++
Sbjct: 76 CAVYSKCGGCSLQHLSYDGQLEFKRNQVEETMKRIGKLNVEVPETLGMENPWRYRNKSQV 135
Query: 107 AVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTG 166
V + G YQ+ +H ++D+ C H+ + + AV+ R+ + + EPYDE G
Sbjct: 136 PVGFVNGKLTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDEQTGKG 195
Query: 167 DLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRNGGS 225
D+R++ R+ + Q+ +V + E+ P +++ L E L
Sbjct: 196 DIRHIMT-------------RFAHTTGQLMIVLVTTKERMPFKEEIVRELVEQLE----- 237
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
+ S+ N NVIFG+R + L G+ + + GI +++ SF Q N
Sbjct: 238 ------LTSIVQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPIQT 291
Query: 286 DILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
++L ++ +V D Y G G I L L A+K + V VEI ++ + + +
Sbjct: 292 EVLYQQAIDAAELTGEETVIDAYCGIGSISLCL--AKKAKHVYGVEIVDQA-IQDARANA 348
Query: 344 RLPKSVDGNISWHNADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHALQSI 394
L + + A+ I P + G +DVLVVDPPRKG D L+ + ++
Sbjct: 349 ELNELANTTFETGKAEEVI-PAWYKAGIVADVLVVDPPRKGCDEKLLETILAM 400
>gi|339008225|ref|ZP_08640799.1| RNA methyltransferase, TrmA family [Brevibacillus laterosporus LMG
15441]
gi|338775428|gb|EGP34957.1| RNA methyltransferase, TrmA family [Brevibacillus laterosporus LMG
15441]
Length = 550
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 136/301 (45%), Gaps = 38/301 (12%)
Query: 100 WRCRAKLAV-RGTSTSPLIG-LYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
WR R K V G LIG Y E +H+++DI C H + V +++ + L +E
Sbjct: 222 WRYRNKAQVPIGEENGALIGGFYAEKSHDIIDINECLIQHQANDEVVATIKRIAERLGIE 281
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
PY+E TG LR+V V + G + + L+ + P ++L L
Sbjct: 282 PYNEVKHTGLLRHVVAKVGA-----------KTGDLMVVLI--TTEAFLPEREQLIQLI- 327
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
R+ + S+ N NVIFG++ L G+ ++ +G I +++ SF
Sbjct: 328 --------RAELPGVKSIVQNINERRTNVIFGDQTFTLWGDDVIYDYIGPIKFAISARSF 379
Query: 278 GQANTRAFDILLRKLQKY--VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q N D+L K +Y + +V D Y G G I L L A+K + V VEI E+
Sbjct: 380 YQVNPEQTDVLYSKTLEYAGLEGNETVIDAYCGIGTISLFL--AQKAKRVYGVEIVPEAI 437
Query: 336 LSFEKTVSRLPKSVDG--NISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHA 390
+K ++G N+S+ + +W + +DV+VVDPPRKG D +L+
Sbjct: 438 ADAKKNA-----ELNGLENVSFEVGPAEVVIPNWRKQGIVADVIVVDPPRKGCDEALLTT 492
Query: 391 L 391
+
Sbjct: 493 I 493
>gi|336396255|ref|ZP_08577654.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus farciminis KCTC
3681]
Length = 452
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 88/338 (26%), Positives = 153/338 (45%), Gaps = 62/338 (18%)
Query: 78 ATDFFKSIGLLDFTFDSC----RLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHC 133
TDF K IGL D + + +R +A++ VR + G Y+ +H++V + +
Sbjct: 104 VTDFDK-IGLKDVVVNKTLGMESPFNYRNKAQVPVRQVNGKLTTGFYRRRSHDLVPMENF 162
Query: 134 KAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKV 193
P+I+A + +R +++ NV YDE ++ G +R ++ Y G++
Sbjct: 163 LIQDPKIDAEILRVRDILRKYNVRGYDEKNQKGQIR-----------TIMVRRAYFTGEM 211
Query: 194 QITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWR 253
I LV ++P+ + + + + N + S++ N + NVIFG +
Sbjct: 212 MIVLV-----SRTPDISHYKDITKEILDNPE-------VKSLFLNINSKNTNVIFGQKMT 259
Query: 254 HLLGETDFWENVGGIDISLAPSSFGQAN-TRAFDILLRKLQKYVPYGA-SVTDLYAGAGV 311
L G+ + + G ++P SF Q N + ++ + K G +V D Y+G G
Sbjct: 260 LLGGKKYIDDEILGHTYRISPRSFYQVNPVQTQNLYQMAIDKAELTGKENVVDAYSGIGT 319
Query: 312 IGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS 371
IGLSLA K + V +E+ +++ K D N +N N+ ++VG
Sbjct: 320 IGLSLAD--KAKHVTGIEVIEDA-----------VKDADQNAKLNNITNA----DFVVGK 362
Query: 372 ---------------DVLVVDPPRKGLDSSLVHALQSI 394
DVL+VDPPRKGL SSL+ +L++I
Sbjct: 363 TEDVLDEWAKNDISVDVLMVDPPRKGLASSLIDSLKNI 400
>gi|55820731|ref|YP_139173.1| TrmA family tRNA methyltransferase [Streptococcus thermophilus LMG
18311]
gi|55736716|gb|AAV60358.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus LMG
18311]
Length = 453
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 90/365 (24%), Positives = 161/365 (44%), Gaps = 45/365 (12%)
Query: 64 THEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGL 119
T + R +VD + +K+ G+ D T Y +R +A++ VR G
Sbjct: 89 TEQLKFKRKQVVD---NLYKTAGISDVEVAETLGMETPYAYRNKAQVPVRRVKGQLETGF 145
Query: 120 YQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYN 179
Y++ +H+++ I I+ + +R ++ +++PYDE ++TG +R++ + Y+
Sbjct: 146 YRKNSHDLIPIEDFLIQDKEIDKLIVFVRDLLRRYDLKPYDEKEQTGLIRHLVVRRGHYS 205
Query: 180 TSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANF 239
Q+ LV+ + K D++ + + N I S+ N
Sbjct: 206 G-------------QMMLVFVTTKPKVFRIDQVIAKITEAFPN---------IVSIIQNI 243
Query: 240 QTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYG 299
N IFG +R L G+ +++ G D ++ SF Q NT + L + +
Sbjct: 244 NDKNTNAIFGKEFRTLYGQDTITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDFSDLN 303
Query: 300 AS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHN 357
+ V D Y+G G IGLS A++ + V VE+ + + +K R +G + H
Sbjct: 304 SDSIVIDAYSGIGTIGLSF--AKQVKEVYGVEVIETAVEDAKKNAER-----NGITNAHY 356
Query: 358 ADNSIE--PLSWL---VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMV 412
NS E W + DV++VDPPRKGL S + A S+ K +S + ++M
Sbjct: 357 VANSAENAMAKWSQDGIKPDVIIVDPPRKGLTESFIKA--SVAMQPEKITYVSCNPATMA 414
Query: 413 KEEKR 417
++ KR
Sbjct: 415 RDIKR 419
>gi|319654336|ref|ZP_08008424.1| YefA protein [Bacillus sp. 2_A_57_CT2]
gi|317394036|gb|EFV74786.1| YefA protein [Bacillus sp. 2_A_57_CT2]
Length = 460
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 101/354 (28%), Positives = 155/354 (43%), Gaps = 40/354 (11%)
Query: 54 CPHFQSCSGCT-HEFNLHRPIIVDE--ATDFFKSIGLLDFTFDSCRLYG---WRCRAKLA 107
CP ++ C GC + ++ E D + IG L+ L WR R K
Sbjct: 78 CPIYKECGGCQLQHLSYEGQLLAKEKQVRDVLERIGKLEGVKVHPVLGMKDPWRYRNKAQ 137
Query: 108 V-RGTSTSPLIG-LYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
V G LIG YQ+ TH ++D+ C + + V+ +++ V YDE
Sbjct: 138 VPIGEQEGGLIGGFYQQRTHQIIDMKECLIQQEKNDEVVQKVKEICGRYGVRAYDEGRHK 197
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRNGG 224
G+LR+V MA T G+V I LV +R + P+ ++ E +A
Sbjct: 198 GELRHV-MARYGLVT----------GEVMIVLV--TRTNELPHKQRIVEEIA-------- 236
Query: 225 SRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRA 284
S + S+ N + NVI G+ R L GE ++ +G I +++ SF Q N
Sbjct: 237 --SSIEGVKSIVHNVNSRKTNVIMGDVTRVLWGEEVIYDFIGDIKFAISARSFYQVNPEQ 294
Query: 285 FDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTV 342
+L K +Y V D Y G G I L L A+K + V VEI E+ + K
Sbjct: 295 TKVLYDKALEYANLSGEEQVIDAYCGIGTISLFL--AQKAKEVFGVEIVPEA-IEDAKRN 351
Query: 343 SRLPKSVDGNISWHNADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHALQSI 394
+ L + + + A+ I P + G ++VLVVDPPRKG D +L+ + S+
Sbjct: 352 ADLNGMTNASFAVGKAEEVI-PDWYKKGNTAEVLVVDPPRKGCDEALLKTILSM 404
>gi|379726911|ref|YP_005319096.1| TrmA family RNA methyltransferase [Melissococcus plutonius DAT561]
gi|376317814|dbj|BAL61601.1| TrmA family RNA methyltransferase [Melissococcus plutonius DAT561]
Length = 455
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 87/354 (24%), Positives = 156/354 (44%), Gaps = 44/354 (12%)
Query: 54 CPHFQSCSGC-----THEFNL-HRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCR 103
CP +++C GC ++E L + ++ +A FK ++ T + +R +
Sbjct: 74 CPVYETCGGCQLQHLSYEAQLIFKRDLLKQALAKFKPENYSNYPLRKTLGMKNPWNYRNK 133
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A+ + T+ GLYQ G+H +V I +C IN ++ + + + N+ Y+E
Sbjct: 134 AQFQLAQTNNKIYSGLYQAGSHQIVAIDNCPVQQTVINDIIQKIIKILNNYNLPIYNEQK 193
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNG 223
+G + +L + GKVQ+ + S+ K PN KL + E + +
Sbjct: 194 NSGIFK-----------TLMVRNSIQTGKVQVVFITQSK--KFPN--KLAIIQEIIQKCP 238
Query: 224 GSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTR 283
+ S+ N Q +V+ G HL GE E + + L+ +F Q N +
Sbjct: 239 E-------VISIMQNIQNEKTSVVMGEETIHLWGEHQIEEKINQVTFRLSSRAFFQLNPK 291
Query: 284 AFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+IL + K + S + D Y G G IGLS+ ARK + V+ ++ ++ ++
Sbjct: 292 QTEILYGEAIKALDSLPSDKIIDAYCGVGTIGLSI--ARKVKEVRGMDTIPQAIEDAKQN 349
Query: 342 VSRLPKSVDGNISWHNADNSIEPL-SWLVGS---DVLVVDPPRKGLDSSLVHAL 391
K V+ +++ N+ + L WL D ++VDPPR GLD L+ +
Sbjct: 350 A----KKVNATNTYYEVGNAEKLLPKWLEQGFIPDGIIVDPPRVGLDKKLLQTI 399
>gi|418130192|ref|ZP_12767076.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA07643]
gi|418187037|ref|ZP_12823565.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47360]
gi|418229775|ref|ZP_12856380.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae EU-NP01]
gi|419477691|ref|ZP_14017516.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA18068]
gi|421270388|ref|ZP_15721244.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SPAR48]
gi|353803484|gb|EHD83776.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA07643]
gi|353852267|gb|EHE32256.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47360]
gi|353888673|gb|EHE68446.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae EU-NP01]
gi|379567073|gb|EHZ32060.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA18068]
gi|395868183|gb|EJG79301.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SPAR48]
Length = 543
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 140/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +HN++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVVLVTTR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + + + D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTVIDFAELKKDDVIIDAYSGIGTIGLSV--AKHVKEVYGVELIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K S L K + + A+N+++ WL + V++VDPPRKGL S + A
Sbjct: 342 SQKNAS-LNKITNAHYVCDTAENAMK--KWLKEGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|168204451|ref|ZP_02630456.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens E str.
JGS1987]
gi|170664028|gb|EDT16711.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens E str.
JGS1987]
Length = 455
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 92/374 (24%), Positives = 160/374 (42%), Gaps = 69/374 (18%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDFTFDSCRL-----YGWRCRAK 105
C ++ C GC + ++ + + D IG LD + L + +R + +
Sbjct: 73 CAIYKRCGGCKLQHASYKAQLDFKWERVKDCVSKIGKLDPSIVKYPLGMENPWRYRNKVQ 132
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED--- 162
L + + IG + +H+++D+ C + V+L R+ I++ N+ PY+ D
Sbjct: 133 LPIGLINGEVKIGFFAPRSHDIIDMESCLIQDEIGDKVVKLTREWIEKFNIRPYNVDGEY 192
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
D G +R++ + + +V + LV N N P+ E + + +N
Sbjct: 193 DEKGIVRHIMI-----------RRGFTTNEVMVVLVTNGEN--IPHK---EEFVDLMVKN 236
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
I SV N + NVI G + L GE + +G +++P SF Q N
Sbjct: 237 IPG------IKSVIQNINSKKTNVILGLESKTLWGEDTISDYIGDFRFNISPLSFFQVNP 290
Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
++L K +Y + V D Y G G I L L ++K + V VEI
Sbjct: 291 IQTEVLYGKALEYANLTGNEEVFDAYCGTGTITLFL--SQKAKKVYGVEI---------- 338
Query: 341 TVSRLPKSVDGNISWHNA-DNSIEPLSWLVG---------------SDVLVVDPPRKGLD 384
+P+++D +W NA +N +E + + VG +DV+VVDPPRKG D
Sbjct: 339 ----IPQAIDN--AWINAKENKVENVEFFVGESEVVIPDLINKGVKADVVVVDPPRKGCD 392
Query: 385 SSLVHALQSIGSAE 398
L+ A+ +I + +
Sbjct: 393 KKLLDAITNIDAKK 406
>gi|304406301|ref|ZP_07387958.1| RNA methyltransferase, TrmA family [Paenibacillus curdlanolyticus
YK9]
gi|304344885|gb|EFM10722.1| RNA methyltransferase, TrmA family [Paenibacillus curdlanolyticus
YK9]
Length = 513
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 103/366 (28%), Positives = 155/366 (42%), Gaps = 59/366 (16%)
Query: 54 CPHFQSCSGC-----THEFNLH--RPIIVDEATDFFKSIGLLDFTFDSCR--LYG----W 100
C ++ C GC ++E L R +VD T IG L+ D G W
Sbjct: 119 CTIYKQCGGCQLQHMSYEAQLRWKRQHVVDNLT----RIGKLNVDVDIIVHPTIGMDEPW 174
Query: 101 RCRAKLAV----------RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQG 150
R R K V G + + G Y +G+H ++D+ C H R + V +++
Sbjct: 175 RYRNKAQVPIGMALADIEDGAAGGLIGGFYAQGSHRIIDMDACLIQHERNDEVVRQIKRI 234
Query: 151 IKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSD 210
EL + YDE+ G LR+V + + G++ + LV N + PN
Sbjct: 235 GTELGITAYDEESGRGLLRHVVVRTG-----------FVTGELMVVLVTNGTH--IPN-- 279
Query: 211 KLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDI 270
K E +A G R+ ++S+ N T NVIFG+ R L G ++ + GI
Sbjct: 280 KTEWIA-------GIRAALPDVNSIVQNVNTRDTNVIFGDETRTLWGSDVIYDELDGIRF 332
Query: 271 SLAPSSFGQANTRAFDILLRKLQKYVPY-GA-SVTDLYAGAGVIGLSLAAARKCRSVKCV 328
+++ SF Q N L RK Y GA +V D Y G G I L L ARK V V
Sbjct: 333 AISARSFYQVNPSQTVALYRKAVDYAGLTGAETVIDAYCGIGTISLFL--ARKAGRVYGV 390
Query: 329 EINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDS 385
E+ E + E + N + + + W + +DV+VVDPPRKG D+
Sbjct: 391 EVVPE---AIEDAKRNAELNGIANAEFEAGLSEVVIPRWREEGIAADVIVVDPPRKGCDA 447
Query: 386 SLVHAL 391
+L+ +
Sbjct: 448 ALLDTI 453
>gi|254826004|ref|ZP_05231005.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
gi|293595243|gb|EFG03004.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
Length = 453
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 156/353 (44%), Gaps = 40/353 (11%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKL 106
C + C GC+ + + ++ + K IG L+ T + +R ++++
Sbjct: 76 CAVYSKCGGCSLQHLSYEGQLAFKRNQVEETMKRIGKLNVDVPETLGMENPWRYRNKSQV 135
Query: 107 AVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTG 166
V + G YQ+ +H ++D+ C H+ + + AV+ R+ + + EPYDE G
Sbjct: 136 PVGFVNGKLTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDEQTGRG 195
Query: 167 DLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRNGGS 225
D+R++ R+ + Q+ +V + E+ P +++ L E L
Sbjct: 196 DIRHIMT-------------RFAHTTGQLMIVLVTTKERMPFKEEIVRELVEQLE----- 237
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
+ S+ N NVIFG+R + L G+ + + GI +++ SF Q N
Sbjct: 238 ------LTSIVQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPLQT 291
Query: 286 DILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
++L ++ +V D Y G G I L L A+K + V VEI ++ + + +
Sbjct: 292 EVLYQQAIDAAELTGEETVIDAYCGIGSISLCL--AKKAKHVYGVEIVDQA-IQDARANA 348
Query: 344 RLPKSVDGNISWHNADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHALQSI 394
L + + A+ I P + G +DVLVVDPPRKG D L+ + ++
Sbjct: 349 ELNELANTTFETGKAEEVI-PAWYKAGIVADVLVVDPPRKGCDEKLLETILAM 400
>gi|47092904|ref|ZP_00230686.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str. 4b
H7858]
gi|255521018|ref|ZP_05388255.1| hypothetical RNA methyltransferase [Listeria monocytogenes FSL
J1-175]
gi|47018730|gb|EAL09481.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str. 4b
H7858]
Length = 453
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 156/353 (44%), Gaps = 40/353 (11%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKL 106
C + C GC+ + + ++ + K IG L+ T + +R ++++
Sbjct: 76 CAVYSKCGGCSLQHLSYEGQLAFKRNQVEETMKRIGKLNVDVPETLGMENPWRYRNKSQV 135
Query: 107 AVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTG 166
V + G YQ+ +H ++D+ C H+ + + AV+ R+ + + EPYDE G
Sbjct: 136 PVGFVNGKLTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDEQTGKG 195
Query: 167 DLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRNGGS 225
D+R++ R+ + Q+ +V + E+ P +++ L E L
Sbjct: 196 DIRHIMT-------------RFAHTTGQLMIVLVTTKERMPFKEEIVRELVEQLE----- 237
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
+ S+ N NVIFG+R + L G+ + + GI +++ SF Q N
Sbjct: 238 ------LTSIVQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPIQT 291
Query: 286 DILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
++L ++ +V D Y G G I L L A+K + V VEI ++ + + +
Sbjct: 292 EVLYQQAIDAAELTGEETVIDAYCGIGSISLCL--AKKAKHVYGVEIVDQA-IQDARANA 348
Query: 344 RLPKSVDGNISWHNADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHALQSI 394
L + + A+ I P + G +DVLVVDPPRKG D L+ + ++
Sbjct: 349 ELNELANTTFETGKAEEVI-PAWYKAGIVADVLVVDPPRKGCDEKLLETILAM 400
>gi|407978257|ref|ZP_11159090.1| TrmA family RNA methyltransferase [Bacillus sp. HYC-10]
gi|407415264|gb|EKF36871.1| TrmA family RNA methyltransferase [Bacillus sp. HYC-10]
Length = 459
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 85/355 (23%), Positives = 151/355 (42%), Gaps = 46/355 (12%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDFTFDSCRL-------YGWRCR 103
CP ++ C GC + + + D + IG LD + + +R +
Sbjct: 78 CPIYKQCGGCQIQHMSYEGQLKFKHKQVKDVLERIGKLDMSRVKVHPVLGMEDPWNYRNK 137
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A++ V + G YQ+ TH ++D+ C + AV+ ++ ++ Y+E+
Sbjct: 138 AQVPVGEREGGLVAGFYQQRTHEIIDMEKCLIQQSENDEAVQAVKDICNAFGIKAYNEER 197
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNG 223
G LR+V + RY ++ +V+ +R P K + + + +
Sbjct: 198 HKGWLRHVMV-------------RYGIATGEMMVVFVTRTANFPQ--KQQVIEQII---- 238
Query: 224 GSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTR 283
+R ++ S+ N + NVIFG+ L GE ++ +G I +++ SF Q N
Sbjct: 239 ---ARFPHVRSIVQNVNSKKTNVIFGDETTVLWGEEYIYDTIGDIKFAISARSFYQVNPA 295
Query: 284 AFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y +V D Y G G I L L A+K V VEI E+ ++
Sbjct: 296 QTKVLYDKALEYAELQGEETVIDAYCGIGTISLFL--AQKAGRVYGVEIVPEAIEDAKRN 353
Query: 342 VSRLPKSVDG--NISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
S++G N+ + + +W + +D LVVDPPRKG D +L+ +
Sbjct: 354 A-----SLNGIKNVEFAVGEAETVIPNWYKEGIKADTLVVDPPRKGCDEALLDTI 403
>gi|441471500|emb|CCQ21255.1| Uncharacterized RNA methyltransferase lmo1751 [Listeria
monocytogenes]
gi|441474632|emb|CCQ24386.1| Uncharacterized RNA methyltransferase lmo1751 [Listeria
monocytogenes N53-1]
Length = 453
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 85/354 (24%), Positives = 157/354 (44%), Gaps = 42/354 (11%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKL 106
C + C GC+ + ++ ++ + K IG L+ T + +R ++++
Sbjct: 76 CAVYSKCGGCSLQHLSYDGQLEFKRNQVEETMKRIGKLNVEVPETLGMENPWRYRNKSQV 135
Query: 107 AVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTG 166
V + G YQ+ +H ++D+ C H+ + + AV+ R+ + + EPYDE G
Sbjct: 136 PVGFVNGKLTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDEQTGKG 195
Query: 167 DLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRNGGS 225
D+R++ R+ + Q+ +V + E+ P +++ L E
Sbjct: 196 DIRHIMT-------------RFAHTTGQLMIVLVTTKERMPFKEEIVRDLVE-------- 234
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
+ + S+ N NVIFG+R + L G+ + + GI +++ SF Q N
Sbjct: 235 ---QVELTSIVQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPLQT 291
Query: 286 DILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
++L ++ +V D Y G G I L L A+K + V VEI ++ + + +
Sbjct: 292 EVLYQQAIDAAELTGEETVIDAYCGIGSISLCL--AKKAKHVYGVEIVDQA-IQDARANA 348
Query: 344 RLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
L + + A+ I SW + +DVLVVDPPRKG D L+ + ++
Sbjct: 349 ELNELANTTFETGKAEEVIP--SWYKAGIVADVLVVDPPRKGCDEKLLETILAM 400
>gi|217958023|ref|YP_002336567.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus AH187]
gi|229137289|ref|ZP_04265905.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST26]
gi|375282559|ref|YP_005102996.1| TrmA family RNA methyltransferase [Bacillus cereus NC7401]
gi|423356686|ref|ZP_17334288.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus IS075]
gi|423571397|ref|ZP_17547639.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
MSX-A12]
gi|217068021|gb|ACJ82271.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus AH187]
gi|228646192|gb|EEL02410.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST26]
gi|358351084|dbj|BAL16256.1| RNA methyltransferase, TrmA family [Bacillus cereus NC7401]
gi|401077273|gb|EJP85613.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus IS075]
gi|401200767|gb|EJR07646.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
MSX-A12]
Length = 459
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 87/366 (23%), Positives = 154/366 (42%), Gaps = 63/366 (17%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF---TFDSCRLYGWRCR 103
CP ++ C GC + N R I+V +A + + + L + T + +R +
Sbjct: 80 CPVYEECGGCQLQHLDYKEQLNQKRDIVV-QAFEKYMNNSLEEKIRPTLGMENPWHYRNK 138
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
++L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E
Sbjct: 139 SQLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKK 198
Query: 164 RTGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
+ G +R + + AV T G+VQ+TL+ + E+ PN ++ + +
Sbjct: 199 QKGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQFITEVQ---- 239
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
+ + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 240 -----KQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLN 294
Query: 282 TRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L + +K + + D Y G G IGL LA N +++
Sbjct: 295 PEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTIGLWLA-------------NDAAEVRGM 341
Query: 340 KTVSRLPKSVDGNISWHNADNSI----EPLSWLVG-------SDVLVVDPPRKGLDSSLV 388
+ N H N+ + WL DV+VVDPPR G D L+
Sbjct: 342 DVIPEAIADARKNAKHHGFTNTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLL 401
Query: 389 HALQSI 394
+ +
Sbjct: 402 ETILKV 407
>gi|253681766|ref|ZP_04862563.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
D str. 1873]
gi|253561478|gb|EES90930.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
D str. 1873]
Length = 494
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 89/377 (23%), Positives = 157/377 (41%), Gaps = 79/377 (20%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDFTFDSCRL------------- 97
C ++ C GC+ + +N + D + IG L T D+ +
Sbjct: 101 CSIYKRCGGCSIQHFNYNAQLEFKRNRVKDCLERIGKLKVTIDNEQENSNKKSTILHDTL 160
Query: 98 -----YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIK 152
Y +R + +L V + IG Y +H+++D+ C + V L +Q ++
Sbjct: 161 GMENPYRYRNKVQLPVGEENGEIKIGFYAPRSHDIIDMNICYIQDEVGDKVVSLAKQWMQ 220
Query: 153 ELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL 212
+ N++PY+E+ TG +R+V M +NT+ +I +V +R + P+
Sbjct: 221 KYNIKPYNEEKNTGIVRHV-MIRRGFNTN------------EIMIVIVTRTNELPHK--- 264
Query: 213 ESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISL 272
+ L E + +N + S+ N T NV+ G L G+ + +G ++
Sbjct: 265 KELIELILKNING------VTSIVQNINTKKTNVVLGLNNITLYGKDYISDYIGEFKFNI 318
Query: 273 APSSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAA-ARKCRSVKCVE 329
+P SF Q N ++L K +Y + V D Y G G I L L+ A+K V+ VE
Sbjct: 319 SPLSFFQVNPIQTEVLYNKALEYAALTGNEVVFDAYCGTGTISLFLSKNAKKVYGVEIVE 378
Query: 330 INKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVG---------------SDVL 374
N + +N+++ + ++VG +DV+
Sbjct: 379 ------------------DAIKNAKINAKENNVDNVEFIVGKSEEVIPNLIKQGIKADVV 420
Query: 375 VVDPPRKGLDSSLVHAL 391
VVDPPRKG D +L+ A+
Sbjct: 421 VVDPPRKGCDKALLDAI 437
>gi|374322253|ref|YP_005075382.1| RNA methyltransferase, trma family protein [Paenibacillus terrae
HPL-003]
gi|357201262|gb|AET59159.1| RNA methyltransferase, trma family protein [Paenibacillus terrae
HPL-003]
Length = 558
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 94/369 (25%), Positives = 156/369 (42%), Gaps = 57/369 (15%)
Query: 51 ALQCPHFQSCSGCTHEFNLHRPII---VDEATDFFKSIGLLDFTFDSCRLYG-------- 99
A C + C GC + + + D + IG L+ + + G
Sbjct: 160 AAPCAIYDQCGGCQIQHMSYEAQLGWKRQHVVDVLERIGKLNVEGNEGSIAGEQAAVKVL 219
Query: 100 --------WRCRAKLAV-RGTSTSPLIG-LYQEGTHNVVDIPHCKAHHPRINAAVELLRQ 149
WR R K V G + L+G Y G+H +VD+ C R + V +++
Sbjct: 220 PTLGMNEPWRYRNKAQVPIGVTEGGLVGGFYARGSHRIVDMDTCLIQDERNDEVVARVKE 279
Query: 150 GIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNS 209
+ L + Y+E+ G LR+V + +R G++ + LV N R+ P++
Sbjct: 280 IGRVLGISAYNEETGRGLLRHVVVKTA-----------FRTGEMMLVLVTNGRD--IPHA 326
Query: 210 DK-LESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGI 268
D + S+ E++ ++ S+ N T NVIFG+ R L G ++ +G +
Sbjct: 327 DAWIGSIREYI----------PHVASICQNVNTKRTNVIFGDETRVLWGRDVIYDYIGNV 376
Query: 269 DISLAPSSFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVK 326
+++ SF Q N ++L K +Y +V D Y G G I L L A+ V
Sbjct: 377 QFAISARSFYQVNPVQTEVLYSKTVEYAGLTGKETVIDAYCGIGTISLFL--AQHADQVY 434
Query: 327 CVEINKESQLSFEKTVSRLPKSVDGNISWH-NADNSIEPLSWL---VGSDVLVVDPPRKG 382
VEI KE + E S + N+ + A + P +W + +D++VVDPPRKG
Sbjct: 435 GVEIVKE---AIEDARSNALLNNMRNVKFEVGASEDVIP-AWKEQGITADIIVVDPPRKG 490
Query: 383 LDSSLVHAL 391
D L+ +
Sbjct: 491 CDPRLLETI 499
>gi|254853661|ref|ZP_05243009.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
gi|300765947|ref|ZP_07075919.1| TrmA family RNA methyltransferase [Listeria monocytogenes FSL
N1-017]
gi|404281361|ref|YP_006682259.1| TrmA/RumA/YefA-family RNA methyltransferase [Listeria monocytogenes
SLCC2755]
gi|404287179|ref|YP_006693765.1| TrmA/RumA/YefA-family RNA methyltransferase [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|258607040|gb|EEW19648.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
gi|300513333|gb|EFK40408.1| TrmA family RNA methyltransferase [Listeria monocytogenes FSL
N1-017]
gi|404227996|emb|CBY49401.1| RNA methyltransferase, TrmA/RumA/YefA-family [Listeria
monocytogenes SLCC2755]
gi|404246108|emb|CBY04333.1| RNA methyltransferase, TrmA/RumA/YefA-family [Listeria
monocytogenes serotype 7 str. SLCC2482]
Length = 453
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 156/353 (44%), Gaps = 40/353 (11%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKL 106
C + C GC+ + + ++ + K IG L+ T + +R ++++
Sbjct: 76 CAVYSKCGGCSLQHLSYEGQLAFKRNQVEETMKRIGKLNVDVPETLGMENPWRYRNKSQV 135
Query: 107 AVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTG 166
V + G YQ+ +H ++D+ C H+ + + AV+ R+ + + EPYDE G
Sbjct: 136 PVGFVNGKLTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDEQTGRG 195
Query: 167 DLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRNGGS 225
D+R++ R+ + Q+ +V + E+ P +++ L E L
Sbjct: 196 DIRHIMT-------------RFAHTTGQLMIVLVTTKERMPFKEEIVRELVEQLE----- 237
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
+ S+ N NVIFG+R + L G+ + + GI +++ SF Q N
Sbjct: 238 ------LTSIVQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPLQT 291
Query: 286 DILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
++L ++ +V D Y G G I L L A+K + V VEI ++ + + +
Sbjct: 292 EVLYQQAIDAAELTGEETVIDAYCGIGSISLCL--AKKAKHVYGVEIVDQA-IQDARANA 348
Query: 344 RLPKSVDGNISWHNADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHALQSI 394
L + + A+ I P + G +DVLVVDPPRKG D L+ + ++
Sbjct: 349 ELNELANTTFETGKAEEVI-PAWYKAGIVADVLVVDPPRKGCDEKLLETILAM 400
>gi|389572911|ref|ZP_10162988.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus sp. M 2-6]
gi|388427356|gb|EIL85164.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus sp. M 2-6]
Length = 461
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 87/366 (23%), Positives = 153/366 (41%), Gaps = 68/366 (18%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDFT-------FDSCRLYGWRCR 103
CP ++ C GC + + ++ + D + IG LD + + +R +
Sbjct: 78 CPIYKQCGGCQIQHMSYEGQLLFKQKQVKDVLERIGKLDMSRVKVHPVLGMEDPWNYRNK 137
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A++ V + G YQ+ TH ++D+ C + V+ ++ ++ Y+E+
Sbjct: 138 AQVPVGEREGGLVTGFYQQRTHEIIDMEKCLIQQSENDEVVQAVKDICNAFGIKAYNEER 197
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNG 223
G LR+V + RY ++ +V+ +R P K + + + +
Sbjct: 198 HKGWLRHVMV-------------RYGMATGEMMVVFVTRTADFPQ--KQQVIEQII---- 238
Query: 224 GSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTR 283
+R ++ S+ N + NVIFG+ L GE ++ +G I +++ SF Q N
Sbjct: 239 ---ARFPHVRSIVQNVNSKKTNVIFGDETTVLWGEEYIYDTIGDIKFAISARSFYQVNPA 295
Query: 284 AFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y +V D Y G G I L L A+K V VEI
Sbjct: 296 QTKVLYDKALEYAELQGEETVIDAYCGIGTISLFL--AQKAGRVYGVEI----------- 342
Query: 342 VSRLPKSVDGNISWHNAD-NSIEPLSWLVG---------------SDVLVVDPPRKGLDS 385
+P++++ + NAD N I + + VG +D LVVDPPRKG D
Sbjct: 343 ---VPEAIED--AKRNADLNGINNVEFAVGEAETVIPNWYKEGIKADTLVVDPPRKGCDE 397
Query: 386 SLVHAL 391
+L+ +
Sbjct: 398 ALLDTI 403
>gi|392958467|ref|ZP_10323977.1| putative RNA methyltransferase [Bacillus macauensis ZFHKF-1]
gi|391875493|gb|EIT84103.1| putative RNA methyltransferase [Bacillus macauensis ZFHKF-1]
Length = 461
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 84/365 (23%), Positives = 161/365 (44%), Gaps = 67/365 (18%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDFT--FDSCRL----YGWRCRA 104
CP ++ C GC + + + D + IG L+ ++ + + +R +A
Sbjct: 78 CPIYKWCGGCQLQHLSYEGQLQFKRKQVQDVLQRIGKLEDVPVLETLGMNDEPWRYRNKA 137
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
++ V + G YQ+ +H +V++ C + + A++++++ + N+ PYDE
Sbjct: 138 QVPVGARDGRLITGFYQKRSHEIVEMDSCIITGKQDDEAIQIVKEILNNYNITPYDEKTH 197
Query: 165 TGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGG 224
G +R++ RY ++ +V ++ ++ P++ K+ +A+
Sbjct: 198 KGTIRHI-------------IARYGKTTEELMIVLVTKGKELPHAKKI--IADL------ 236
Query: 225 SRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRA 284
++ + S+ N + NVIFG+ L G ++N+G I +++ SF Q N
Sbjct: 237 -QAALPKLKSIVQNINSKKTNVIFGDETNVLWGNEYIYDNIGDIRFAISARSFYQINPDQ 295
Query: 285 FDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTV 342
+L K +Y S V D Y G G I L L A++ + V VEI
Sbjct: 296 TKVLYEKALQYAKLTGSETVIDAYCGIGTISLFL--AQQAKQVYGVEI------------ 341
Query: 343 SRLPKSVDGNISWHNAD-NSIEPLSWLVGS---------------DVLVVDPPRKGLDSS 386
+P++++ + NA+ N+I + VG+ DV+VVDPPRKG D +
Sbjct: 342 --VPEAIED--ARRNAELNNITNAQFAVGASEDILPQWKKQGITPDVIVVDPPRKGCDDA 397
Query: 387 LVHAL 391
L+ +
Sbjct: 398 LLQTI 402
>gi|386586483|ref|YP_006082885.1| hypothetical protein SSUD12_1349 [Streptococcus suis D12]
gi|353738629|gb|AER19637.1| hypothetical protein SSUD12_1349 [Streptococcus suis D12]
Length = 451
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 90/338 (26%), Positives = 161/338 (47%), Gaps = 38/338 (11%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A + VR + G +++ +H++V I H I+A V R +++L+++P
Sbjct: 125 AYRNKAAVPVRRVNGQLETGFFRKNSHDLVPIEDFYIQHKEIDALVLATRDLLRKLDLKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R + + Y +G++ + LV P ++E+L E
Sbjct: 185 YDEKEQTGLVRNIVVRRGHY-----------SGQLMLVLVTT-----RPKIFRIETLIER 228
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
L S+ + S+ N N IFG +R L G + + G + ++ SF
Sbjct: 229 LT------SQFPNLVSIVQNINDQNTNAIFGQEFRLLHGSETIADTMLGNEFEISAPSFY 282
Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q NT + L + + A V D Y+G G IGLS A++ + V VE+ +++ L
Sbjct: 283 QVNTEMAEKLYQTAIDFAELSADDVVIDAYSGIGTIGLSF--AKQVKHVYGVEVVEKAVL 340
Query: 337 SFEKTVSRLPKSVDGNISW--HNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+K +R +D N+++ +A+++++ W+ V V+ VDPPRKGL S + A
Sbjct: 341 DSQKNAAR--NGID-NVTYVCDSAESAMQ--KWVADGVKPTVIFVDPPRKGLTESFIKAS 395
Query: 392 QSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQ 429
S+ K +S + ++M ++ KR L K VQ
Sbjct: 396 TSVKP--EKIVYISCNVATMARDIKRYEELGYKLKKVQ 431
>gi|329769944|ref|ZP_08261342.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella sanguinis
M325]
gi|328837548|gb|EGF87174.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella sanguinis
M325]
Length = 445
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 136/317 (42%), Gaps = 61/317 (19%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
Y +R ++ + V+ +G Y+ +H+VV+I C + N + R I E+N+
Sbjct: 119 YHYRNKSVIPVQKVDNEVKMGYYKPRSHDVVNIEKCFIQYDEHNKLMNYTRDLIAEMNLS 178
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDK-LESLA 216
YDE G +R++ + T + +V NEK P DK ++ +
Sbjct: 179 IYDEKTHKGAIRHIMFRTNSNKTEI--------------MVGIIVNEKFPGLDKFVKKIT 224
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
EF R I SV N NVIFG++ +L G+ + +GGI+ ++ S
Sbjct: 225 EFDSR----------IISVMLNTNNKKTNVIFGDKTENLYGKDYITDTLGGIEFKISLRS 274
Query: 277 FGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q N ++L K + ++ D Y G G I SL AA+K + V +EI + +
Sbjct: 275 FYQVNPIQTEVLYSKALELAKLNQDDTIIDAYCGIGTI--SLFAAQKVKKVYGIEIVEAA 332
Query: 335 QLSFEKTVSRLPKSVDGNISWHNA-DNSIEPLSWLVGS---------------DVLVVDP 378
L + NA +N+I + +L+G D ++VDP
Sbjct: 333 VLD----------------ARENAKNNNITNVEFLLGKSEDVIKDLISKDVQIDAVIVDP 376
Query: 379 PRKGLDSSLVHALQSIG 395
PRKG + S + L S+G
Sbjct: 377 PRKGCEESFLRDLASMG 393
>gi|402812938|ref|ZP_10862533.1| RNA methyltransferase, TrmA family [Paenibacillus alvei DSM 29]
gi|402508881|gb|EJW19401.1| RNA methyltransferase, TrmA family [Paenibacillus alvei DSM 29]
Length = 549
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 87/305 (28%), Positives = 143/305 (46%), Gaps = 38/305 (12%)
Query: 100 WRCRAKLAV---RGTSTSPLIGLY-QEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELN 155
WR R K + + T LIG Y + +H ++D H + A+ ++Q +++
Sbjct: 220 WRYRNKSQMPIGKNERTGELIGGYFAKASHRIIDTDTSLIQHEMNDDAMRAVKQVVRKYG 279
Query: 156 VEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ES 214
+EPY+E+ TG LR+V M V +R ++ IT V N +K P+ +K+
Sbjct: 280 IEPYNEEQHTGLLRHVMMRVG-----------FRTNELMITFVTNG--DKLPHQEKIVAE 326
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
LAE L + + SV + T NVI G++ R L G + +G I ++
Sbjct: 327 LAEALPQ----------LKSVCQSINTKRTNVIMGDKTRVLWGSEYITDYIGDIAFKISA 376
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
SF Q N ++L K +Y +V D Y G G I L L A++ + V VEI +
Sbjct: 377 RSFYQVNPVQTEVLYEKAVEYAGLTGNETVIDAYCGIGTISLFL--AQRAKRVLGVEIVE 434
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVH 389
E+ ++ + + L + + A++ I W V DV+VVDPPRKG D +L+
Sbjct: 435 EA-IADARRNAELNGVTNAEFAVGAAEDVIP--RWKEQGVTPDVIVVDPPRKGCDPALLE 491
Query: 390 ALQSI 394
+ ++
Sbjct: 492 TMLAM 496
>gi|373857735|ref|ZP_09600475.1| RNA methyltransferase, TrmA family [Bacillus sp. 1NLA3E]
gi|372452406|gb|EHP25877.1| RNA methyltransferase, TrmA family [Bacillus sp. 1NLA3E]
Length = 460
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 102/385 (26%), Positives = 166/385 (43%), Gaps = 61/385 (15%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVDEATDFFK-SIGLLDF--TFDSCRLYGWRCR 103
CP + C GC + R II+ K +G L T +G+R +
Sbjct: 79 CPVYDECGGCQLQHLSYEQQLKEKRDIIIQSLERHTKIPVGELTINETIGMENPWGYRNK 138
Query: 104 AKLAV----RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
++ V RG L GLY +H ++DI +C HP+ N A E +++ +++L + Y
Sbjct: 139 SQFQVGLDARGKV---LAGLYGLNSHQLIDIQNCAVQHPQTNKATETVKKILQDLQISIY 195
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
+E R G +R + V + +G++QI L+ P K + + E +
Sbjct: 196 NEKTRKGIVRTIVSRVGVH-----------SGELQIVLITT-----QPELPKKDQIIEII 239
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
R + S+ N + ++IFG L GE E +G + L+ +F Q
Sbjct: 240 I------DRLPDVKSIMQNINGAKTSLIFGEETVALDGEEFIQETLGDLSFELSARTFFQ 293
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
N L +++K + V D Y G G IGL LA + V+ ++I ES
Sbjct: 294 LNPVQTVKLYNEVKKAAALTGTEKVVDAYCGVGTIGLWLAD--QAGEVRGMDIIPESIED 351
Query: 338 FEKTVSRL----PKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHA 390
+K R K V G + + P W+ DV++VDPPR GLD+ L
Sbjct: 352 AKKNAKRHGFTNTKYVPGKV------QEVLP-KWIKKGWKPDVIIVDPPRTGLDNQL--- 401
Query: 391 LQSIGSAE-RKAKSLSESSSSMVKE 414
L++I SAE +K +S + S++ K+
Sbjct: 402 LETILSAEPKKVVYVSCNPSTLAKD 426
>gi|452854676|ref|YP_007496359.1| methyltransferase of m5U747 and m5U1939 in 23S RNA [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
gi|452078936|emb|CCP20689.1| methyltransferase of m5U747 and m5U1939 in 23S RNA [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
Length = 461
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 82/354 (23%), Positives = 154/354 (43%), Gaps = 44/354 (12%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDF-------TFDSCRLYGWRCR 103
CP ++ C GC + + ++ + D + IG LD T + +R +
Sbjct: 77 CPIYKQCGGCQLQHMTYEGQLLFKQKQVKDVLERIGKLDLSNVTVHPTLGMEDPWNYRNK 136
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A++ V + G YQ+ +H+++D+ C + + AV+ ++ V+ Y+E+
Sbjct: 137 AQVPVGEREGGLVAGFYQQRSHDIIDMSACMIQQSKNDEAVQAVKDICASYGVKAYNEER 196
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRN 222
G LR++ + RY ++ +V+ +R P+ K+ E +
Sbjct: 197 HKGWLRHIMV-------------RYGVVTGEMMIVFITRTSDFPHKAKIIEDIT------ 237
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
++ ++ S+ N + NVIFG+ + GE ++ +G + +++ SF Q N
Sbjct: 238 ----TQFPHVKSIVQNINPNKTNVIFGDETNVIWGEEYIYDLIGDVKFAISARSFYQVNP 293
Query: 283 RAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+L + +Y +V D Y G G I L L A++ + V VEI E+ + K
Sbjct: 294 EQTKVLYDRALEYAELQGEETVIDAYCGIGTISLFL--AKQAKKVYGVEIVPEA-IEDAK 350
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + + A+ I W + +D LVVDPPRKG D +L+ +
Sbjct: 351 RNAELNGITNAEFAVGEAETVIP--KWYEEGITADTLVVDPPRKGCDEALLRTI 402
>gi|357013655|ref|ZP_09078654.1| TrmA family RNA methyltransferase [Paenibacillus elgii B69]
Length = 491
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 92/353 (26%), Positives = 157/353 (44%), Gaps = 44/353 (12%)
Query: 54 CPHFQSCSGC-----THEFNLH-RPIIVDEATDFFKSIGL----LDFTFDSCRLYGWRCR 103
CP ++SC GC T+E L + +V EA F + G+ + + +R +
Sbjct: 111 CPVYESCGGCQLQHMTYEAQLRAKEELVREA--FRRYAGMETAPIRPILGMDNPWSYRNK 168
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A+L + + GLY GTH +VDI C H P IN E + + + EL++ Y+E
Sbjct: 169 AQLQLGRAGEQVVAGLYSPGTHKLVDITGCAIHDPAINQVTETVAKLLGELDIPVYNERT 228
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNG 223
R G +R + V + G++Q+TL+ + ++ P+ ++L
Sbjct: 229 RQGVVRTIVARVGR-----------QTGEIQLTLITAA--DRIPDRERLV---------- 265
Query: 224 GSRSREHY--IHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
R R+ + ++ N + +IFG + L G+ E +G + SL+P +F Q N
Sbjct: 266 -RRIRDELPQVTTIAQNLNREASPLIFGAKTTVLWGKERLDETLGDVRFSLSPRAFFQLN 324
Query: 282 TRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
L +++ V D Y G G IGL LA R V+ +E+ E+ +
Sbjct: 325 PEQTVKLYDTVREAAALTGEERVVDAYCGTGTIGLWLAP--HAREVRGIELIPEA-VDDA 381
Query: 340 KTVSRLPKSVDGNISWHNADNSI-EPLSWLVGSDVLVVDPPRKGLDSSLVHAL 391
+ +R + + A+ + E + + DV+VVDPPR G + L+ AL
Sbjct: 382 RDNARASGAANARFFVGRAEQLLPEWVQHGIRPDVVVVDPPRTGCERPLLLAL 434
>gi|261418678|ref|YP_003252360.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC61]
gi|319765493|ref|YP_004130994.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC52]
gi|261375135|gb|ACX77878.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC61]
gi|317110359|gb|ADU92851.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC52]
Length = 457
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 155/358 (43%), Gaps = 48/358 (13%)
Query: 54 CPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRCR 103
CP ++ C GC ++E L + + IG LD + +R +
Sbjct: 78 CPVYRQCGGCQLQHLSYEGQLKAK--EKQVKEVLARIGKLDGVTVHPVIGMKNPWRYRNK 135
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A++ + ++G Y+E +H ++D+ C + + V+ +++ + + PYDE
Sbjct: 136 AQVPIGEREGGLVVGFYKERSHEIIDMDACLIQQEKNDVVVQTVKRIAERYGIPPYDETT 195
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNG 223
G LR++ V Y + G+V + LV +R E P+ + + + R
Sbjct: 196 HKGVLRHI---VARYGAA--------TGEVMVVLV--TRTEHLPHE---QEIVRAIVREI 239
Query: 224 GSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTR 283
+ S+ N NVIFG + R L G + +G I +++ SF Q N
Sbjct: 240 PD------VTSIVQNINPERTNVIFGAKTRVLWGSEYITDRIGDIQFAISARSFYQVNPE 293
Query: 284 AFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y S V D Y G G I L L ARK + V VEI E+ ++
Sbjct: 294 QTKVLYDKALEYAELTGSETVMDAYCGIGTISLFL--ARKAKHVYGVEIVPEAIEDAKRN 351
Query: 342 VSRLPKSVDG--NISWH-NADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHALQSI 394
++G N+++ A + P + G +D LVVDPPRKG D+SL+ + ++
Sbjct: 352 A-----ELNGIRNVTFEVGAAEDVIPRWYQEGIRADCLVVDPPRKGCDASLLETIIAM 404
>gi|451347978|ref|YP_007446609.1| TrmA family RNA methyltransferase [Bacillus amyloliquefaciens
IT-45]
gi|449851736|gb|AGF28728.1| TrmA family RNA methyltransferase [Bacillus amyloliquefaciens
IT-45]
Length = 461
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 154/355 (43%), Gaps = 46/355 (12%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDF-------TFDSCRLYGWRCR 103
CP ++ C GC + + ++ + D + IG LD T + +R +
Sbjct: 77 CPIYKQCGGCQLQHMTYEGQLLFKQKQVKDVLERIGKLDLSNVTVHPTLGMEDPWNYRNK 136
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A++ V + G YQ+ +H+++D+ C + + AV+ ++ V+ Y+E+
Sbjct: 137 AQVPVGEREGGLVAGFYQQRSHDIIDMSACLIQQSKNDEAVQAVKDICAAYGVKAYNEER 196
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL--ESLAEFLWR 221
G LR++ + RY ++ +V+ +R P+ ++ + A+F
Sbjct: 197 HKGWLRHIMV-------------RYGVVTGEMMIVFITRTSDFPHKAEIIEDITAQF--- 240
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ S+ N + NVIFG+ + GE ++ +G + +++ SF Q N
Sbjct: 241 --------PHVKSIVQNINPNKTNVIFGDETNVIWGEEYIYDLIGDVKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L K +Y +V D Y G G I L L A++ + V VEI E+ +
Sbjct: 293 PEQTKVLYDKALEYAELQGEETVIDAYCGIGTISLFL--AKQAKKVYGVEIVPEA-IEDA 349
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
K + L + + A+ I W + +D LVVDPPRKG D +L+ +
Sbjct: 350 KRNAELNGITNAEFAVGEAETVIP--KWYEEGITADTLVVDPPRKGCDEALLRTI 402
>gi|229015810|ref|ZP_04172786.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1273]
gi|229022017|ref|ZP_04178573.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1272]
gi|423393126|ref|ZP_17370352.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG1X1-3]
gi|228739273|gb|EEL89713.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1272]
gi|228745469|gb|EEL95495.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1273]
gi|401632159|gb|EJS49948.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG1X1-3]
Length = 459
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 88/358 (24%), Positives = 158/358 (44%), Gaps = 47/358 (13%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF---TFDSCRLYGWRCR 103
C ++ C GC + N R I+V +A + + + L + T + +R +
Sbjct: 80 CSVYEECGGCQLQHLDYKEQLNQKRDIVV-QAFEKYMNNSLEEKIRPTLGMENPWHYRNK 138
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
++L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E
Sbjct: 139 SQLQVGRKDEKVITGLYKQNSHQLIDISHCMIQHKATNEATKVVRRILEKLNVSIYNEKK 198
Query: 164 RTGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
+ G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 199 QKGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--IAEV--- 238
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ----QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLN 294
Query: 282 TRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L + +K + + D Y G G IGL L A V+ +++ E+ +
Sbjct: 295 PEQTVVLYDEAKKAAALTGNEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIEDAK 352
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
K R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 353 KNAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|329767396|ref|ZP_08258921.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella haemolysans
M341]
gi|328836085|gb|EGF85776.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella haemolysans
M341]
Length = 458
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 82/316 (25%), Positives = 139/316 (43%), Gaps = 59/316 (18%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
Y +R ++ + V+ + +G Y+ +H+VV+I C + N + LR I ELN+
Sbjct: 131 YHYRNKSVIPVQKVNGEVKMGYYKPRSHDVVNIEKCFIQYDEHNVLMNKLRSLISELNLS 190
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
YDE++ +G +R++ + T+ SE + + +V +K L E
Sbjct: 191 VYDENNHSGAIRHIM-----FRTNTVKSE------IMVGIVV---------KEKFNKLDE 230
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
F+ + R I S+ N NVIFG++ L G+ + + GI+ ++ SF
Sbjct: 231 FVEKISKLDDR---IVSIMLNINDKKTNVIFGDKTEKLFGQDYITDTLDGIEFKISLRSF 287
Query: 278 GQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q N ++L K + ++ D Y G G I SL AA+K + V +EI + +
Sbjct: 288 YQVNPVQTEVLYSKALELAELKETDTIIDAYCGIGTI--SLFAAKKVKKVYGIEIVEAAV 345
Query: 336 LSFEKTVSRLPKSVDGNISWHNA-DNSIEPLSWLVGS---------------DVLVVDPP 379
L + NA +N+IE +L+G D ++VDPP
Sbjct: 346 LD----------------ARENAKNNNIENAEFLLGKSEDVIKKLISQNIKLDAVIVDPP 389
Query: 380 RKGLDSSLVHALQSIG 395
RKG + S + L S+G
Sbjct: 390 RKGCEESFLRDLASMG 405
>gi|424835274|ref|ZP_18259939.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sporogenes
PA 3679]
gi|365978067|gb|EHN14162.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sporogenes
PA 3679]
Length = 459
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 84/354 (23%), Positives = 152/354 (42%), Gaps = 43/354 (12%)
Query: 54 CPHFQSCSGCT---HEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRL---------YGWR 101
CP ++ C GC + + D K IG LD D ++ Y +R
Sbjct: 77 CPIYKQCGGCQVQHYSYKAQLDFKKRRVIDSLKRIGKLDI--DKIKIEDTIGMENPYRYR 134
Query: 102 CRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDE 161
+ ++ VR IG Y+ TH V D+ C + + ++++R + + N+ Y+E
Sbjct: 135 NKIQMPVRFEKDEIKIGFYRPRTHEVADVKECFIQDEQADEIIQIIRNWMAKHNISAYNE 194
Query: 162 DDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
G +R++ + + ++N ++ + +V N E + ++ + + L
Sbjct: 195 QMGKGFIRHIMV-----------RKAFKNKELMLVIVTNKEKEIPYKEELIDEVIKELPN 243
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
+ S+ N + NVI G + L G+ + + +++P SF Q N
Sbjct: 244 ----------MKSIIQNVNSKKTNVILGEKCITLWGKDTITDYIDKFKFNISPLSFFQVN 293
Query: 282 TRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
++L +K ++ V D Y G G I L L ++K + V VEI KE+ +
Sbjct: 294 PIQTEVLYKKALEFADLKGEEIVFDAYCGTGTISLFL--SQKAKKVYGVEIIKEA-IDNA 350
Query: 340 KTVSRLPKSVDGNISWHNADNSIEP--LSWLVGSDVLVVDPPRKGLDSSLVHAL 391
K ++ K +D + I P + V +DV+VVDPPRKG + SL+ A+
Sbjct: 351 KDNAKENK-IDNAEFFVGKSEEIIPDLIDKGVKADVVVVDPPRKGCEKSLLEAI 403
>gi|423370308|ref|ZP_17347730.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD142]
gi|401074247|gb|EJP82652.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD142]
Length = 459
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 87/358 (24%), Positives = 158/358 (44%), Gaps = 47/358 (13%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVDEATDFFKSIGLLDF---TFDSCRLYGWRCR 103
C ++ C GC + N R I+V +A + + + L + T + +R +
Sbjct: 80 CSVYEECGGCQLQHLDYKEQLNQKRDIVV-QAFEKYMNDSLEEKIRPTLGMENPWHYRNK 138
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
++L V + GLY++ +H ++DI HC H N A +++R+ +++LN+ Y+E
Sbjct: 139 SQLQVGRKDEKVITGLYKQNSHQLIDISHCIIQHKATNEATKVVRRILEKLNISIYNEKK 198
Query: 164 RTGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
+ G +R + + AV T G+VQ+TL+ + E+ PN D+ +AE
Sbjct: 199 QKGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKDQF--IAEV--- 238
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
+ + + S+ N +V+FG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ----QKQMPSVKSIMQNVNWRKTSVVFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLN 294
Query: 282 TRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L + +K + + D Y G G IGL L A V+ +++ E+ +
Sbjct: 295 PEQTVVLYDEAKKAAALTGNEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIEDAK 352
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
K R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 353 KNAKRHGFT---NAKYEAGKAEQWLPKWVKEGWSPDVIVVDPPRTGCDDKLLETILKV 407
>gi|259502049|ref|ZP_05744951.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus antri
DSM 16041]
gi|259169962|gb|EEW54457.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus antri
DSM 16041]
Length = 474
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 90/366 (24%), Positives = 163/366 (44%), Gaps = 47/366 (12%)
Query: 65 HEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGLY 120
+ R +++D + + F+ G ++ T + Y +R +A+ VR GLY
Sbjct: 111 QQLAFKRQVVLD-SLEKFQPYGYRNYDVRQTIAAPEEYHYRNKAQFQVRMVDGHVAAGLY 169
Query: 121 QEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNT 180
+ +H++VD+ C PR V + Q I++L + YDE +G ++
Sbjct: 170 KPNSHDLVDMQECAVQMPRTMKVVRTVVQLIEDLQIPVYDEAHNSGIIK----------- 218
Query: 181 SLPASERYRNGKVQITLVWNSRN--EKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWAN 238
++ E + G++Q+T + N+ K P L ++A+ L + S+ N
Sbjct: 219 TIVVRESWTTGELQLTFITNTPKLVHKRP---LLTAIAQQLPE----------VVSIMQN 265
Query: 239 FQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPY 298
+++G + HL G+ E++ G+D L+ SF Q N ++L + + +
Sbjct: 266 VNPGDTPLVWGEQMIHLAGKQTITESLMGLDFELSARSFLQLNPEQTEVLYEQAAEALEL 325
Query: 299 GA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWH 356
++ D YAG G IGL+LAA + ++V+ +EI E+ ++G + H
Sbjct: 326 DREDTLIDAYAGIGTIGLALAA--RVKAVRGMEIIPEAVADANANA-----QLNGISNAH 378
Query: 357 NADNSIEPL--SWL---VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSM 411
E + WL + D LVVDPPR GLD L+ Q + RK +S +S+
Sbjct: 379 YEVGKAEEVMPRWLAEGLQFDALVVDPPRTGLDDELIK--QILKVKPRKFAYVSCGMASL 436
Query: 412 VKEEKR 417
+ +R
Sbjct: 437 ARNLRR 442
>gi|311033023|ref|ZP_07711113.1| YefA [Bacillus sp. m3-13]
Length = 455
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 95/355 (26%), Positives = 152/355 (42%), Gaps = 47/355 (13%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIG---------LLDFTFDSCRLYGWR 101
CP ++ C GC + + +V + D + IG +L + R +R
Sbjct: 75 CPIYKQCGGCQLQHLSYEGQLVAKQKQVKDVLERIGHLKDVPVHPVLGMDHNPWR---YR 131
Query: 102 CRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDE 161
+A++ + + G YQ+ +H ++D+ C + V+ +R+ + +V Y+E
Sbjct: 132 NKAQVPIGEREGGLIAGFYQQRSHEIIDMKECLIQQEINDRVVQTVREICDKHDVRAYNE 191
Query: 162 DDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLW 220
G LR+V A G+V I L+ +R PN + + + E L
Sbjct: 192 KTHKGVLRHVM-----------ARYGLVTGEVMIVLI--TRTPDIPNRRAIVDEITEALP 238
Query: 221 RNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQA 280
+ SV N T NVIFG+ R L G ++ +G I +++ SF Q
Sbjct: 239 E----------VKSVVQNVNTKKTNVIFGDETRVLWGNEYIYDFIGDIKFAISARSFYQV 288
Query: 281 NTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSF 338
N +L K +Y SV D Y G G I L L A+K + V VEI E+ +
Sbjct: 289 NPEQTKVLYDKALEYAELTGEESVIDAYCGIGTISLFL--AQKAKKVFGVEIVPEA-IED 345
Query: 339 EKTVSRLPKSVDGNISWHNADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHAL 391
K + L + + + A+ I P + G +DVLVVDPPRKG D SL+ +
Sbjct: 346 AKRNAELNEITNAEFAVGEAEVVI-PKWYKEGNTADVLVVDPPRKGCDESLLKTI 399
>gi|15900900|ref|NP_345504.1| RNA methyltransferase [Streptococcus pneumoniae TIGR4]
gi|111658257|ref|ZP_01408949.1| hypothetical protein SpneT_02000571 [Streptococcus pneumoniae
TIGR4]
gi|421242974|ref|ZP_15699494.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2081074]
gi|421247292|ref|ZP_15703778.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2082170]
gi|50401653|sp|Q97R12.1|Y1029_STRPN RecName: Full=Uncharacterized RNA methyltransferase SP_1029
gi|14972502|gb|AAK75144.1| RNA methyltransferase, TrmA family [Streptococcus pneumoniae TIGR4]
gi|395609167|gb|EJG69256.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2081074]
gi|395614113|gb|EJG74134.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2082170]
Length = 543
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 139/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +HN++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVVLVTTR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + + D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKKDDVIIDAYSGIGTIGLSV--AKHVKEVYGVELIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K S L K + + A+N+++ WL + V++VDPPRKGL S + A
Sbjct: 342 SQKNAS-LNKITNAHYVCDTAENAMK--KWLKEGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|398309867|ref|ZP_10513341.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus mojavensis
RO-H-1]
Length = 466
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 86/376 (22%), Positives = 158/376 (42%), Gaps = 81/376 (21%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVD----------EATDFFKSIGLLDFTFDSCR 96
CP ++ C GC + + R I++ E D +++G+ +
Sbjct: 82 CPVYEQCGGCQLQHLAYSQQLREKRDIVIQSLERHTKFKVENMDIRETVGMDN------- 134
Query: 97 LYGWRCRAKLAV-RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELN 155
+ +R +++ + R S S + GLY +H++V I C HP N ++R+ +++ N
Sbjct: 135 PWNYRNKSQFQIGRSQSGSIIAGLYGLDSHDIVPIKDCIVQHPATNKTTGIVRRILEDFN 194
Query: 156 VEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESL 215
V Y+E R GD+R + V + G+VQ+ LV + + P+ +++
Sbjct: 195 VSVYNERKRKGDVRTIVTRVG-----------FETGEVQVVLV--TAKDTLPHKEEIVKA 241
Query: 216 AEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPS 275
+ R + S+ N + +VIFG + + L G T E +G + L+
Sbjct: 242 IQ---------KRLPEVKSIIQNVNGAKTSVIFGEKSKPLAGHTVIQEVLGDVSFELSAR 292
Query: 276 SFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
+F Q N L +++K V D Y G G IG+ +A K V+ +++ KE
Sbjct: 293 AFFQLNPEQTVKLYDEVKKAAQLTGKEKVVDAYCGVGTIGMWVADGAK--EVRGMDVIKE 350
Query: 334 SQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDP 378
S +K N H N+ +++ G+ DV++VDP
Sbjct: 351 SIDDAKK-----------NAKKHGMTNA----TYVTGTAEHWLPKWTKEGFRPDVVIVDP 395
Query: 379 PRKGLDSSLVHALQSI 394
PR G DS+ + ++ +
Sbjct: 396 PRTGCDSTFLDTIKKV 411
>gi|423421414|ref|ZP_17398503.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG3X2-1]
gi|401098580|gb|EJQ06592.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG3X2-1]
Length = 459
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 88/358 (24%), Positives = 158/358 (44%), Gaps = 47/358 (13%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF---TFDSCRLYGWRCR 103
C ++ C GC + N R I+V +A + + + L + T + +R +
Sbjct: 80 CSVYEECGGCQLQHLDYKEQLNQKRDIVV-QAFEKYMNNSLEEKIRPTLGMENPWHYRNK 138
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
++L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E
Sbjct: 139 SQLQVGRKDEKVITGLYKQNSHQLIDISHCMIQHKATNEATKVVRRILEKLNVSIYNEKK 198
Query: 164 RTGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
+ G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 199 QKGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--IAEV--- 238
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ----QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLN 294
Query: 282 TRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L + +K + + D Y G G IGL L A V+ +++ E+ +
Sbjct: 295 PEQTVVLYDEAKKAAALTGNEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIEDAK 352
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
K R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 353 KNAKRHGFT---NTKYEAGKAEQWLPEWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|423480566|ref|ZP_17457256.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG6X1-2]
gi|401147502|gb|EJQ55004.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG6X1-2]
Length = 459
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 88/358 (24%), Positives = 158/358 (44%), Gaps = 47/358 (13%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF---TFDSCRLYGWRCR 103
C ++ C GC + N R I+V +A + + + L + T + +R +
Sbjct: 80 CSVYEECGGCQLQHLDYKEQLNQKRDIVV-QAFEKYMNNSLEEKIRPTLGMENPWHYRNK 138
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
++L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E
Sbjct: 139 SQLQVGRKDEKVITGLYKQNSHQLIDISHCMIQHKATNEATKVVRRILEKLNVSIYNEKK 198
Query: 164 RTGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
+ G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 199 QKGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--IAEV--- 238
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ----QKQMPSVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLN 294
Query: 282 TRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L + +K + + D Y G G IGL L A V+ +++ E+ +
Sbjct: 295 PEQTVVLYDEAKKAAALTGNEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIEDAK 352
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
K R + N + W+ DV+VVDPPR G D L+ + +
Sbjct: 353 KNAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407
>gi|257885254|ref|ZP_05664907.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,231,501]
gi|257821106|gb|EEV48240.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,231,501]
Length = 460
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 83/361 (22%), Positives = 156/361 (43%), Gaps = 56/361 (15%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRC 102
CP + C GC + + + +++ +A + FK G + T + +R
Sbjct: 76 CPVYYECGGCQLQHLAYQAQLDFKKDLLL-QALEKFKPAGFRSYQLLPTIGMDEPWHYRN 134
Query: 103 RAKLAVRGTSTSPLI--GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYD 160
+A+ +R + I GLY+ +H +V I C PR + + Q + + + YD
Sbjct: 135 KAQFQLRKNKQTQKIEAGLYEANSHQLVPITDCLVQEPRTQKVMNTVVQLLNKFDAPIYD 194
Query: 161 EDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLW 220
E +G R + + + + G++Q+ V+ +R++K P + +
Sbjct: 195 ERTNSGIFRTIMVRIGV-----------KTGELQV--VFITRSKKFPQKNA-------MI 234
Query: 221 RNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQA 280
R R E + S+ N Q +++ G+ HL G+ E + + L+P +F Q
Sbjct: 235 REINERLPE--VVSIMQNVQAQKTSLVMGDETIHLWGKEAIEEQINEVTFDLSPRAFFQL 292
Query: 281 NTRAFDILLRKLQKY--VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSF 338
N + ++L + K V ++ D Y G G IGLS+ A++ + V+ ++ ++
Sbjct: 293 NPQQTELLYGEGIKALDVQPNETIVDAYCGVGTIGLSV--AKQAKEVRGMDTVPQAIADA 350
Query: 339 EKTVSRLPKSVDGNISWHNADNSIEPL-----SWL---VGSDVLVVDPPRKGLDSSLVHA 390
+K V RL +HN + WL D ++VDPPR GLD++L+ +
Sbjct: 351 KKNVERL--------GYHNTRYEVGTAEQVLPKWLNEGFQPDGIIVDPPRTGLDNALIQS 402
Query: 391 L 391
L
Sbjct: 403 L 403
>gi|116627537|ref|YP_820156.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus
LMD-9]
gi|386086343|ref|YP_006002217.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Streptococcus
thermophilus ND03]
gi|386344346|ref|YP_006040510.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus JIM
8232]
gi|116100814|gb|ABJ65960.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
thermophilus LMD-9]
gi|312278056|gb|ADQ62713.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Streptococcus
thermophilus ND03]
gi|339277807|emb|CCC19555.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus JIM
8232]
Length = 453
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 91/367 (24%), Positives = 162/367 (44%), Gaps = 49/367 (13%)
Query: 64 THEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGL 119
T + R +VD + +K+ G+ D T Y +R +A++ VR G
Sbjct: 89 TEQLKFKRKQVVD---NLYKTAGISDVEVAETLGMETPYAYRNKAQVPVRRVKGQLETGF 145
Query: 120 YQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYN 179
Y++ +H+++ I I+ + +R ++ +++PYDE ++TG +R++ + Y+
Sbjct: 146 YRKNSHDLIPIEDFLIQDKEIDKLIVFVRDLLRRYDLKPYDEKEQTGLIRHLVVRRGHYS 205
Query: 180 TSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHY--IHSVWA 237
Q+ LV+ + K D++ ++ E + I S+
Sbjct: 206 G-------------QMMLVFVTTKPKVFRIDQV-----------IAKITEAFPSIVSIIQ 241
Query: 238 NFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVP 297
N N IFG +R L G+ +++ G D ++ SF Q NT + L + +
Sbjct: 242 NINDKNTNAIFGKEFRTLYGQDTITDSMLGNDYEISAQSFYQVNTEMAEKLYQIAIDFSD 301
Query: 298 YGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISW 355
+ V D Y+G G IGLS A++ R V VE+ + + +K R +G +
Sbjct: 302 LNSDSIVIDAYSGIGTIGLSF--AKQVREVYGVEVIETAVEDAKKNAER-----NGITNA 354
Query: 356 HNADNSIE--PLSWL---VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSS 410
H NS E W + DV++VDPPRKGL S + A S+ K +S + ++
Sbjct: 355 HYVANSAENAMAKWSQDGIKPDVIIVDPPRKGLTESFIKA--SVAMQPEKITYVSCNPAT 412
Query: 411 MVKEEKR 417
M ++ KR
Sbjct: 413 MARDIKR 419
>gi|354584477|ref|ZP_09003372.1| RNA methyltransferase, TrmA family [Paenibacillus lactis 154]
gi|353196862|gb|EHB62363.1| RNA methyltransferase, TrmA family [Paenibacillus lactis 154]
Length = 539
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 83/352 (23%), Positives = 150/352 (42%), Gaps = 42/352 (11%)
Query: 54 CPHFQSCSGC-----THEFNLH-RPIIVDEATDFFKSIGLLDF--TFDSCRLYGWRCRAK 105
CP F C GC ++E L + IV EA + + + L F + +R +A+
Sbjct: 158 CPVFGICGGCQIQHISYEGQLAAKTDIVREAFNRYAGLDNLRFKPILGMEHPWNYRNKAQ 217
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
L ++ + GLY+ +H++VDI C HP++N AVE ++ ++EL + Y E+
Sbjct: 218 LQLKRQGREVIAGLYEADSHSIVDISGCPIQHPKVNEAVEKVKSVLEELRIPLYKENGSK 277
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGS 225
+R ++ +++G++Q+TLV + + P D +
Sbjct: 278 DGVR-----------TIVVRHGFQSGELQVTLV--TAGSRLPRQDDFVRMLRLTMPE--- 321
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
+ + N ++IFG R L G + E++ + +L+P +F Q N +
Sbjct: 322 ------VSGIAMNINPKKTSLIFGERTITLWGAENMQESLSDLQFALSPRAFFQLNPQQT 375
Query: 286 DILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAA-ARKCRSVKCVEINKESQLSFEKTV 342
L ++ +V D Y G G IGL LA A++ R ++ + + E
Sbjct: 376 VKLYESVRAAAGLTGQETVIDAYCGTGTIGLWLAPYAKEIRGIEAIP------EAVEDAC 429
Query: 343 SRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
++ N S+H W+ + DV++ DPPR GLD + +
Sbjct: 430 INAQRNGRTNASFHVGQAEELLPRWVKDGLRPDVIIADPPRTGLDPRFLETI 481
>gi|424787508|ref|ZP_18214274.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
intermedius BA1]
gi|422113803|gb|EKU17530.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
intermedius BA1]
Length = 543
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 150/325 (46%), Gaps = 38/325 (11%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + G +++ +H+++ I P I+ + R ++ +++P
Sbjct: 125 GYRNKAQIPVRRVNGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R +L + +G++ + LV P ++E L E
Sbjct: 185 YDEKEKTGLIR-----------NLVVRRGHYSGEIMVILVTTR-----PKIFRVEQLIER 228
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
L + I S+ N N IFG WR L G + + D +A +F
Sbjct: 229 LVETFPA------IESIMQNINDQNTNTIFGKDWRTLHGRDYIIDRMLNNDFQIAAPAFY 282
Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q NT + L + + A V D Y+G G IGLS+ A++ + V VE+ E+
Sbjct: 283 QVNTEMAEKLYQTAIDFSELAADDVVLDAYSGIGTIGLSV--AKQVKQVYGVEVIPEAVE 340
Query: 337 SFEKTVSRLPKSVDGNISWH----NADNSIEPLSWL-VGSDVLVVDPPRKGLDSSLVHAL 391
+ +K ++G + H +A+N++ S + DV++VDPPRKGL S + +
Sbjct: 341 NSQKNA-----EINGITNTHYVCDSAENAMANWSKQGIKPDVILVDPPRKGLTESFIES- 394
Query: 392 QSIGSAERKAKSLSESSSSMVKEEK 416
S+ +K +S + ++M ++ K
Sbjct: 395 -SVSMEPKKIIYISCNPATMARDIK 418
>gi|332798852|ref|YP_004460351.1| TrmA family RNA methyltransferase [Tepidanaerobacter acetatoxydans
Re1]
gi|438001891|ref|YP_007271634.1| RNA methyltransferase, TrmA family [Tepidanaerobacter acetatoxydans
Re1]
gi|332696587|gb|AEE91044.1| RNA methyltransferase, TrmA family [Tepidanaerobacter acetatoxydans
Re1]
gi|432178685|emb|CCP25658.1| RNA methyltransferase, TrmA family [Tepidanaerobacter acetatoxydans
Re1]
Length = 460
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 92/398 (23%), Positives = 167/398 (41%), Gaps = 76/398 (19%)
Query: 20 SLGAVRNPPPPAPPSSLPLDPPAANLPSLTCALQCPHFQSCSGCTHEFNLHRPIIV---D 76
++G V P+P +P QC + C GC + + ++
Sbjct: 60 AIGQVIKVLTPSPDRKVP---------------QCINADKCGGCNLQHMTYEAQLLFKTS 104
Query: 77 EATDFFKSIGLLDF-TFDSCRL---YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPH 132
+ D K IG +D D+ + + +R +++ V S ++G Y++ +H++VD+ +
Sbjct: 105 KVKDSLKRIGHIDAEVIDTIGMQQPWHYRNKSQYPVAKQGNSTVMGFYKKRSHDIVDLEN 164
Query: 133 CKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGK 192
C HP + ++++++ + ++ YDE G +R+V + V ++ +
Sbjct: 165 CLIQHPISDKVMQIIKRWLTRYDISIYDELKHEGLIRHVMVRVGN-----------KSKE 213
Query: 193 VQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRW 252
V L+ N + + P++D L + + S+ N T NVI G +
Sbjct: 214 VMAALIANGK--EIPHTDDLIKMLQCDIPG---------FKSLILNINTKKTNVIMGEKN 262
Query: 253 RHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKY--VPYGASVTDLYAGAG 310
L G ++ +G I L+P SF Q N ++L K+ +Y + V DLY G G
Sbjct: 263 ITLYGSPYIYDYIGDIKFRLSPLSFFQVNPIQAEVLYNKVLEYAGITQDEIVLDLYCGTG 322
Query: 311 VIGLSLA-AARKCRSVKCV-----------EINKESQLSFEKTVSR--LPKSVDGNISWH 356
I L LA A+K ++ V +IN + F + + LPK
Sbjct: 323 TITLFLAQKAKKAYGIELVSQAVADARLNAKINGINNAEFIEGAAEAVLPKM-------- 374
Query: 357 NADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSI 394
A+ I+P D++VVDPPR+G D + + I
Sbjct: 375 -AEEGIKP-------DIIVVDPPRRGCDEKTLKTITKI 404
>gi|335038780|ref|ZP_08531987.1| RNA methyltransferase, TrmA family [Caldalkalibacillus thermarum
TA2.A1]
gi|334181319|gb|EGL83877.1| RNA methyltransferase, TrmA family [Caldalkalibacillus thermarum
TA2.A1]
Length = 466
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 96/356 (26%), Positives = 151/356 (42%), Gaps = 48/356 (13%)
Query: 54 CPHFQSCSGCT-HEFNLHRPIIVDE--ATDFFKSIGLLDFTFDSCRLYG-------WRCR 103
CP F C GC + E + + IG LD + +Y WR R
Sbjct: 79 CPIFARCGGCQLQHLAYEEQLKYKEQLVKNDLERIGGLDL--NKVNVYPVIGMEKPWRYR 136
Query: 104 AKLAV--RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDE 161
K V + G Y+ +H+++D+ C H + + ++ +++ L + Y+E
Sbjct: 137 NKTQVPIGEEEGGLIGGFYRPRSHDIIDMEACLIQHEQHDQVIQKVKEIGTRLGIPAYNE 196
Query: 162 DDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
D +G LR+V V Y + G++ I LV N E P +KL +
Sbjct: 197 DKHSGLLRHV---VAKYG--------FATGQLMIVLVTNG--EHIPAKNKLVDELVSAFP 243
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
N + S+ N T NVIFG+ + L GE ++ +G I +++ SF Q N
Sbjct: 244 N---------LKSIVQNINTKRTNVIFGDESKVLWGEPYIYDKIGDIRFAISARSFFQVN 294
Query: 282 TRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L K Y +V D Y G G I L L A+K + V VE+ E+ ++
Sbjct: 295 PVQTQVLYEKAMAYADLEGHETVIDAYCGIGTISLFL--AQKAKQVLGVEVVPEA-VADA 351
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWL----VGSDVLVVDPPRKGLDSSLVHAL 391
K +RL + + A+ I W + +DV+VVDPPRKG D SL+ +
Sbjct: 352 KRNARLNGMTNVQFAVGEAEKII---PWWRAQGIKADVIVVDPPRKGCDGSLLKTI 404
>gi|172058513|ref|YP_001814973.1| RNA methyltransferase [Exiguobacterium sibiricum 255-15]
gi|171991034|gb|ACB61956.1| RNA methyltransferase, TrmA family [Exiguobacterium sibiricum
255-15]
Length = 454
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 92/388 (23%), Positives = 168/388 (43%), Gaps = 67/388 (17%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKL 106
CP + C GC + ++ + D F + L+ T +G+R +A++
Sbjct: 74 CPVYNQCGGCQLQHLSYDAELKFKHNRVRDAFARLAGLEIPVHETMGMEDPWGYRNKAQV 133
Query: 107 AVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTG 166
V S + G YQ+ +H ++D+ +C + + A++ +R+ + +L V YDE +G
Sbjct: 134 PVAFQSNKLMAGFYQKRSHRIIDMDYCLIQNKENDDAIQAVRKVLADLKVPAYDEKKNSG 193
Query: 167 DLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSR 226
+R++ MA Y+T+ ++ +V ++ ++ +DK+ G
Sbjct: 194 VIRHI-MARHGYHTN------------ELMIVLVTKVKQLRGADKIVE---------GIL 231
Query: 227 SREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFD 286
+ S+ N NVI G R L G + + + G+ ++P SF Q N +
Sbjct: 232 KAVPNVTSIQQNINPDETNVILGKRNIVLHGPSVIRDQIAGLTYEISPHSFFQVNPLQTE 291
Query: 287 ILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR 344
L K +Y V D Y G G I LSL A+K + V +E+
Sbjct: 292 KLYGKALEYAQLTGDEIVVDAYCGIGSISLSL--AQKAKHVYGIEM-------------- 335
Query: 345 LPKSVDGNISWHNAD-NSIEPLSWLVGS---------------DVLVVDPPRKGLDSSLV 388
+P+++D + NA N I+ +S+ G+ DV+VVDPPRKG D +
Sbjct: 336 VPQAIDD--ARRNAKANGIDNVSFEYGTAETVMPALVKGGIKPDVIVVDPPRKGCDEEFL 393
Query: 389 HALQSIGSAERKAKSLSESSSSMVKEEK 416
A + A ++ +S ++S+ ++ K
Sbjct: 394 RAAAEV--APKRIVYVSCNASTQARDAK 419
>gi|315645532|ref|ZP_07898656.1| RNA methyltransferase, TrmA family protein [Paenibacillus vortex
V453]
gi|315279010|gb|EFU42320.1| RNA methyltransferase, TrmA family protein [Paenibacillus vortex
V453]
Length = 532
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 88/351 (25%), Positives = 150/351 (42%), Gaps = 40/351 (11%)
Query: 54 CPHFQSCSGC-----THEFNLH-RPIIVDEATDFFKSIGLLDFT--FDSCRLYGWRCRAK 105
CP F C GC ++E L + IV EA + + F + +R +A+
Sbjct: 150 CPVFGICGGCQIQHISYEGQLQAKTDIVREAFSRYAGREAVKFKPILGMEHPWDYRNKAQ 209
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
L ++ + GLY+ +H +VDI C HP++N AVE ++ ++EL + + E+
Sbjct: 210 LQLKRKGHEVIAGLYEADSHTIVDISGCPIQHPKVNEAVEKVKSVLEELRIPLHKENGNK 269
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGS 225
+R ++ +++G++Q+TLV + K P D L +
Sbjct: 270 DGVR-----------TIVVRHGFQSGELQVTLV--TAGGKLPRQDDLVRML--------- 307
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
R + + N ++IFG+R L G E++ + SL+P +F Q N +
Sbjct: 308 RLSIPEVSGISLNINPKKTSLIFGDRTISLWGAESMQESLSDLQFSLSPRAFFQLNPQQT 367
Query: 286 DILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
L ++ +V D Y G G IGL LA K V+ +E E + E +
Sbjct: 368 VKLYESVRAAAGLTGKETVIDAYCGTGTIGLWLAPYAK--EVRGIETIPE---AVEDAKA 422
Query: 344 RLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
++ N S+H W+ + DV++ DPPR GLDS + +
Sbjct: 423 NAQRNGRANASFHVGQAEELLPRWVKEGMKPDVIIADPPRTGLDSRFLETV 473
>gi|227543578|ref|ZP_03973627.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
reuteri CF48-3A]
gi|338202902|ref|YP_004649047.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri
SD2112]
gi|227186418|gb|EEI66489.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
reuteri CF48-3A]
gi|336448142|gb|AEI56757.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri
SD2112]
Length = 478
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 87/341 (25%), Positives = 152/341 (44%), Gaps = 66/341 (19%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
Y +R +A++ V+ G Y+ G+HNVV I P I+ A+ ++R +++ ++
Sbjct: 149 YHYRNKAQVPVKMVHGQLETGFYKRGSHNVVPIEDFYIQDPEIDKAIVVVRDLLRQYHIT 208
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRN---EKSPNSDKLES 214
PYDE G +R V + Y + ++ + LV N++ EK +
Sbjct: 209 PYDEQTGKGVIRTVMV-----------RRGYYSHEMMVVLVTNTKRLPMEKQIVDGIVAG 257
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
+ E + S+ N N + G++ + L G + + + GID +++P
Sbjct: 258 VPE--------------VKSIVQNINDKRTNRLLGDKNKTLWGADEIHDQLLGIDFAISP 303
Query: 275 SSFGQANTRAFDILLRKL--QKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
SF Q N + + L + + +V D Y G G I SLA A+ + V VEI
Sbjct: 304 LSFYQVNPQQTERLYQTAIDNAGLDGNQTVIDAYCGIGTI--SLAVAKHAKQVYGVEI-- 359
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNAD-NSIEPLSWLVGS---------------DVLVV 376
+P +++ + HNA NSI+ ++VG DV++V
Sbjct: 360 ------------VPAAIED--AKHNAKRNSIKNAKFVVGKAEEQFAKWQAAGLKPDVVIV 405
Query: 377 DPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKR 417
DPPRKGL SL+ A +G +K +S + +++V++ KR
Sbjct: 406 DPPRKGLAESLIEATGKMGP--KKVIYVSCNPATLVRDIKR 444
>gi|423370407|ref|ZP_17347829.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD142]
gi|401074071|gb|EJP82478.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD142]
Length = 458
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 155/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNECGGCQLQHLTYEGQLKAK--EKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C +A ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDALIQEVKRICEKHGISAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKEAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 293 PEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 352
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 353 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|375007230|ref|YP_004980862.1| putative RNA methyltransferase [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|359286078|gb|AEV17762.1| putative RNA methyltransferase [Geobacillus thermoleovorans
CCB_US3_UF5]
Length = 457
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 93/356 (26%), Positives = 153/356 (42%), Gaps = 44/356 (12%)
Query: 54 CPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRCR 103
CP ++ C GC ++E L + + IG L+ + +R +
Sbjct: 78 CPVYRQCGGCQLQHLSYEGQLKAK--EKQVKEVLARIGKLEGVTIHPVIGMKNPWRYRNK 135
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A++ V + G Y+E TH ++D+ C + V+ +++ + + PYDE
Sbjct: 136 AQVPVGEREGGLVAGFYKERTHEIIDMDACLIQQEANDVVVQAVKRIAERYGIPPYDEAT 195
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNG 223
G LR++ V Y S G+V + LV +R + P+ + + + +
Sbjct: 196 HKGVLRHI---VARYGAS--------TGEVMVVLV--TRTDHLPHEQDI--VRDIVRAIP 240
Query: 224 GSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTR 283
G + S+ N NVIFG + R L G + +GGI +++ SF Q N
Sbjct: 241 G-------VKSIVQNVNPERTNVIFGAKTRVLWGSEFITDRIGGIQFAISARSFYQVNPE 293
Query: 284 AFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y +V D Y G G I L L ARK + V VEI E+ + K
Sbjct: 294 QTKVLYDKALEYAELTGRETVIDAYCGIGTISLFL--ARKAKHVYGVEIVPEA-IEDAKR 350
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
++L + A++ I W V +D LVVDPPRKG D+SL+ + ++
Sbjct: 351 NAKLNGIQNVTFEVGAAEDVIP--RWYQEGVRADCLVVDPPRKGCDASLLETIIAM 404
>gi|339480176|ref|ZP_08655835.1| RNA methyltransferase [Leuconostoc pseudomesenteroides KCTC 3652]
Length = 465
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/304 (25%), Positives = 137/304 (45%), Gaps = 36/304 (11%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A++ V+ G Y+ G+H +V + + P+++ AV + R +++ NV
Sbjct: 135 AYRNKAQVPVQMIDGQLTTGFYRRGSHKLVPVDNFYIQDPKVDEAVRVTRDILRDYNVSA 194
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRN--EKSPNSDKLESLA 216
YDE + G +R++ A Y + ++ + +V N++ E +DKL
Sbjct: 195 YDEHTKKGVVRHIM-----------ARRGYYSHELMVVIVTNTKRLPEAEEIADKL---- 239
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
R++ + S N NVI G+ + G D + + G D + P+S
Sbjct: 240 ---------RAKLPELKSFIHNINNHDTNVIMGDWNETIWGADDIHDQLMGKDFVIGPNS 290
Query: 277 FGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q N + +L K A +V D Y+G G I LS+ A + + V VE+ + +
Sbjct: 291 FYQVNPQTTSVLYTLAAKKAGLKATDTVVDAYSGIGTITLSV--ADQVKKVYGVEVIEGA 348
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
EK + GN+ + AD + + W + DV+ VDPPRKGL S L+ A+
Sbjct: 349 VADAEKNAHN---NHIGNVEFVLADAPEQMVKWANEGLKPDVVFVDPPRKGLTSELIEAV 405
Query: 392 QSIG 395
++
Sbjct: 406 STMA 409
>gi|116493460|ref|YP_805195.1| tRNA (uracil-5-)-methyltransferase related enzyme [Pediococcus
pentosaceus ATCC 25745]
gi|116103610|gb|ABJ68753.1| 23S rRNA m(5)U-1939 methyltransferase [Pediococcus pentosaceus ATCC
25745]
Length = 491
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 140/297 (47%), Gaps = 32/297 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A+ VR GLY+EGTH++VD+P C HP + + + ++ NV Y
Sbjct: 167 YRNKAQFQVRRLDGKVAAGLYKEGTHDLVDLPTCSVQHPLTMEIIRIAVELFEKYNVSIY 226
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE TG L+ + + V + Q+ + N +P + ++ + + L
Sbjct: 227 DEQTHTGSLKTIVVRVADATK-----------ETQVVFITN-----TPELEHVDEIIDEL 270
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
++ I S N S ++I+G++ +L G+ E + G+ +L+ +F Q
Sbjct: 271 A------AQFPEIVSFMQNLNPSRESLIWGDKTLNLRGKDTIREELDGLSFNLSARAFFQ 324
Query: 280 ANTRAFDILLRKLQKYVPYG--ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
N + +L + +K + ++ D Y+G G IGLSLAA + + V+ ++ N ES +
Sbjct: 325 LNPKQTSVLYAETRKALELSPDDNLVDAYSGVGTIGLSLAA--QAKEVRGMD-NIESAIE 381
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHAL 391
+++ + + + A+ + WL + +VVDPPR GLD+ L+ A+
Sbjct: 382 DANENAKINGIENAHYEFGTAEKVLP--KWLHAGFKPNSIVVDPPRVGLDNKLITAI 436
>gi|225174261|ref|ZP_03728260.1| RNA methyltransferase, TrmA family [Dethiobacter alkaliphilus AHT
1]
gi|225170046|gb|EEG78841.1| RNA methyltransferase, TrmA family [Dethiobacter alkaliphilus AHT
1]
Length = 455
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 95/361 (26%), Positives = 157/361 (43%), Gaps = 55/361 (15%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRC 102
C H C GC + L + I+ +D K IG +D T + +R
Sbjct: 77 CEHAAQCGGCQLQHLQYEEQLKLKQNIV----SDTLKRIGGIDIPVLATMGMQDPWRYRN 132
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ V + + G Y++ +HN++D+ C HP + V +R +++L+V Y E
Sbjct: 133 KAQVPVGLENGTVRAGFYEKRSHNIIDLKCCHIQHPANDNVVHTVRNILQQLSVPVYRER 192
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
+ G +R++ +A T++ T +V + +V N R + + ++ L + +
Sbjct: 193 EHKGLVRHI-LARTSFTTE----------EVLVAIVTNGR-QLPKKQEVVQQLKDSIPNL 240
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
G + N T N I GN LLG E +G + ++ SF Q N
Sbjct: 241 CG----------IVQNINTRKGNTILGNEELTLLGRPWLREKLGNLHFHVSARSFFQVNP 290
Query: 283 RAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
++L K +Y +V DLY G G I L L ARK V VE S E
Sbjct: 291 LQTEVLYNKALEYANLSGTETVFDLYCGIGTISLFL--ARKAAKVVGVE-------SVEA 341
Query: 341 TV--SRLPKSVDG--NISWHNAD-NSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHALQS 393
V +R +V+ N +H ++ P + G +DV+VVDPPRKG D L+ + +
Sbjct: 342 AVHDARENANVNNIKNAEFHTGTAETVVPRLFKQGYHADVVVVDPPRKGCDEKLLATIAA 401
Query: 394 I 394
+
Sbjct: 402 M 402
>gi|260662594|ref|ZP_05863489.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
fermentum 28-3-CHN]
gi|260553285|gb|EEX26228.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
fermentum 28-3-CHN]
Length = 474
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/338 (24%), Positives = 147/338 (43%), Gaps = 58/338 (17%)
Query: 74 IVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVD 129
+V EA FK +G + T + YG+R +A+ VR + GLYQ +H VVD
Sbjct: 118 VVLEALAKFKPLGYRHYWVKDTLAAPHPYGYRNKAQFQVRMQDGHVVAGLYQANSHTVVD 177
Query: 130 IPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYR 189
+ C P + L + I+EL + Y+E +++G ++ +L E
Sbjct: 178 MQTCAVQMPGTMKVINTLVKLIEELAIPVYNEANQSGIIK-----------TLAVRESLA 226
Query: 190 NGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHY---IHSVWANFQTSTNNV 246
G++Q+ ++ N+ A+ + ++ + E + SV N +
Sbjct: 227 TGQIQVAIITNT--------------AKLIKKHALLVAIEDQLPEVTSVVQNVNPGDTPL 272
Query: 247 IFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGA--SVTD 304
++G+ L G+ E++ G+D L+ SF Q N ++L + K + ++ D
Sbjct: 273 VWGDETTLLYGQDYITESLMGLDFRLSARSFLQLNPEQTEVLYEEAAKALDLSKDDTLID 332
Query: 305 LYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWH---NADNS 361
YAG G IGLSLA N+ Q+ +T++ + + N + + NA
Sbjct: 333 AYAGIGTIGLSLA-------------NRVKQVIGMETIADAVQDANNNATLNGVTNARYE 379
Query: 362 IEPLSWLVGS--------DVLVVDPPRKGLDSSLVHAL 391
+ P L+ D LVVDPPR GLD++L+ +
Sbjct: 380 VGPAEELLPKWRSQGQHFDALVVDPPRTGLDNALIDTI 417
>gi|421894892|ref|ZP_16325375.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pediococcus
pentosaceus IE-3]
gi|385272188|emb|CCG90747.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pediococcus
pentosaceus IE-3]
Length = 491
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/300 (26%), Positives = 138/300 (46%), Gaps = 38/300 (12%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A+ VR GLY+EGTH++VD+P C HP + + + ++ NV Y
Sbjct: 167 YRNKAQFQVRRLDGKVAAGLYKEGTHDLVDLPTCSVQHPLTMEIIRIAVELFEKYNVSIY 226
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE TG L+ + + V + Q+ + N +P + ++ + + L
Sbjct: 227 DEQTHTGSLKTIVVRVADATK-----------ETQVVFITN-----TPELEHVDEIIDEL 270
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
++ I S N S ++I+G++ +L G+ E + G+ +L+ +F Q
Sbjct: 271 A------AQFPEIVSFMQNLNPSRESLIWGDKTLNLRGKDTIREELDGLSFNLSARAFFQ 324
Query: 280 ANTRAFDILLRKLQKYVPYG--ASVTDLYAGAGVIGLSLAA-ARKCRSVKCVEINKESQL 336
N + +L + +K + ++ D Y+G G IGLSLAA A++ R + +E E
Sbjct: 325 LNPKQTSVLYAETRKALELSPDDNLVDAYSGVGTIGLSLAAQAKEVRGMDNIESAIEDAN 384
Query: 337 SFEKTVSRLPKSVDGNISWHNADNSIEPL--SWLVGS---DVLVVDPPRKGLDSSLVHAL 391
K ++G + H + E + WL + +VVDPPR GLD+ L+ A+
Sbjct: 385 ENAK--------INGIENAHYEFGTAEKVLPKWLHAGFKPNSIVVDPPRVGLDNKLITAI 436
>gi|389571380|ref|ZP_10161476.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus sp. M 2-6]
gi|388428941|gb|EIL86730.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus sp. M 2-6]
Length = 461
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 88/376 (23%), Positives = 154/376 (40%), Gaps = 81/376 (21%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVD----------EATDFFKSIGLLDFTFDSCR 96
CP ++ C GC + R I++ E D +IG+ D
Sbjct: 80 CPVYEECGGCQLQHLAYEQQLKEKRDIVIQSMERHTKLSVEKIDIRPTIGMED------- 132
Query: 97 LYGWRCRAKLAV-RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELN 155
+ +R +++ V R S + GLY +H +V I C HP+ N ++R+ +++
Sbjct: 133 PWHYRNKSQFQVGRSHSGDIIAGLYGLNSHKLVPIKECIVQHPKTNKTTGVVRKILEKFG 192
Query: 156 VEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESL 215
V Y+E R GD+R + + V + G+VQ+ LV + P K + +
Sbjct: 193 VSVYNERTRKGDVRSIVVRVG-----------FETGEVQVVLVTS-----KPEFPKKKEI 236
Query: 216 AEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPS 275
AE + + R + S+ N +VIFG++ HL G E +G + L+
Sbjct: 237 AEAIQK------RLPEVTSIMHNINGEKTSVIFGHKTSHLAGNMVIQEFLGDVSFELSAR 290
Query: 276 SFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
+F Q N + L + +K V D Y G G IG+ L+ + V+ +++ KE
Sbjct: 291 AFFQLNPKQTLKLYDEAKKAAKLTGKEKVVDAYCGVGTIGMWLSDG--AKEVRGMDVIKE 348
Query: 334 SQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDP 378
S +K N H N+ +++ G+ DV+VVDP
Sbjct: 349 SIDDAKK-----------NAKKHGMKNA----TYVTGTAEHWLPKWVKEGFRPDVIVVDP 393
Query: 379 PRKGLDSSLVHALQSI 394
PR G + + + ++ +
Sbjct: 394 PRTGCERTFLDTVKQV 409
>gi|398815374|ref|ZP_10574044.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Brevibacillus sp.
BC25]
gi|398034956|gb|EJL28211.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Brevibacillus sp.
BC25]
Length = 460
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/365 (24%), Positives = 155/365 (42%), Gaps = 62/365 (16%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVDEATDFFK--------SIGLLDFTFDSCRLY 98
CP + C GC+ + + I+++ + + +IG+ + +
Sbjct: 82 CPVYAECGGCSLQHMDYAAQLASKQEIVIESLRKYARLNQPPVSPTIGMDN-------PW 134
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A+ V + GLYQ G+H +V++ C+ H V+ +Q I+EL +
Sbjct: 135 SYRNKAQFQVGKEKGKLIAGLYQTGSHKLVNLEGCQVQHEATTKIVQSAKQIIEELGIPV 194
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE +TG +R ++ A + G+ Q+TLV +P +++ L
Sbjct: 195 YDEKKQTGVIR-----------TIVARVAFATGETQLTLV-----TATPEIPRVKELLLE 238
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
R+R + + N T +++FG++ L G+ E +G + L+ +F
Sbjct: 239 ------LRTRLPELVGIAQNVNTQKTSLVFGDKTVSLWGKASIAEKLGELSFDLSARAFF 292
Query: 279 QANTRAFDILLRKLQKYVPYGASVT------DLYAGAGVIGLSLAAARKCRSVKCVEINK 332
Q N +KL V A +T DLY G G IGL LA R V+ +E+
Sbjct: 293 QLNPEQ----TQKLYNQVKTAAGLTGKELVLDLYCGTGTIGLWLAPY--AREVRGIELIP 346
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVH 389
E+ + R + N S+H + W DV+VVDPPR GLD +L+
Sbjct: 347 EAVEDANRNAER---NQAANASFHVGRAEVLMPKWAKQGTRPDVVVVDPPRTGLDDALIR 403
Query: 390 ALQSI 394
+L +
Sbjct: 404 SLLDV 408
>gi|418218773|ref|ZP_12845440.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae NP127]
gi|353875428|gb|EHE55280.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae NP127]
Length = 543
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 140/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +HN++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVVLVTTR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGLAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGLSV--AKHVKEVYGVELIPEA-VE 340
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
K +++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 341 NSKKIAQLNNISNAHYVCDTAENAMK--NWLKDGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|377556200|ref|ZP_09785917.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lactobacillus
gastricus PS3]
gi|376168701|gb|EHS87444.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lactobacillus
gastricus PS3]
Length = 478
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 89/374 (23%), Positives = 153/374 (40%), Gaps = 73/374 (19%)
Query: 40 PPAANLPSLTCALQCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLDF----TFDSC 95
PP + L + H + R +++D F + G + T +
Sbjct: 90 PPKDDYAGLAGGFELEHL----AYQRQLAYKRQVVLDSLAKF-RPFGYQHYQVRPTIAAP 144
Query: 96 RLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELN 155
YG+R +A+ +R + GLY+ +H V+D+ C P A+ L Q I+EL
Sbjct: 145 HPYGYRNKAQFQIRQIDGQVVAGLYRANSHEVIDMVTCAVQMPATMQAMRQLVQWIQELQ 204
Query: 156 VEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNS----DK 211
+ YDE+ +G ++ + + E G++Q+T + NSR K P+ DK
Sbjct: 205 IPVYDEEANSGIIKTIAI-----------RESRSTGEIQVTFITNSR--KLPHKRLLLDK 251
Query: 212 LESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDIS 271
+++ + SV NF +I+G L G+ E++ G+D
Sbjct: 252 IQTELP-------------AVRSVMQNFNPGDTPLIWGKETTKLAGDDYLTESLMGLDFH 298
Query: 272 LAPSSFGQANTRAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAAARKCRSVKCVE 329
L+ SF Q + + L + K + ++ D YAG G IGLSLA+ + + V +E
Sbjct: 299 LSARSFLQLHPEQTETLYEEAAKAIDLTPNDTLIDAYAGIGTIGLSLAS--RVKRVLGME 356
Query: 330 INKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVL 374
+P++V + + + A N I + VG+ D +
Sbjct: 357 T--------------IPEAV-ADANRNAALNEITNARYEVGTAEEVMPRWRQEGLTFDAI 401
Query: 375 VVDPPRKGLDSSLV 388
+VDPPR GLD +
Sbjct: 402 IVDPPRTGLDQVFI 415
>gi|184154533|ref|YP_001842873.1| RNA methyltransferase [Lactobacillus fermentum IFO 3956]
gi|183225877|dbj|BAG26393.1| putative RNA methyltransferase [Lactobacillus fermentum IFO 3956]
Length = 535
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 84/338 (24%), Positives = 147/338 (43%), Gaps = 58/338 (17%)
Query: 74 IVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVD 129
+V EA FK +G + T + YG+R +A+ VR + GLYQ +H VVD
Sbjct: 179 VVLEALAKFKPLGYRHYWVKDTLAAPHPYGYRNKAQFQVRMQDGHVVAGLYQTNSHTVVD 238
Query: 130 IPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYR 189
+ C P + L + I+EL + Y+E +++G ++ +L E
Sbjct: 239 MQTCAVQMPGTMKIINTLVKLIEELAIPVYNEANQSGIIK-----------TLAVRESLA 287
Query: 190 NGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHY---IHSVWANFQTSTNNV 246
G++Q+ ++ N+ A+ + ++ + E + SV N +
Sbjct: 288 TGQIQVAIITNT--------------AKLIKKHALLVAIEDQLPEVTSVVQNVNPGDTPL 333
Query: 247 IFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGA--SVTD 304
++G+ L G+ E++ G+D L+ SF Q N ++L + K + ++ D
Sbjct: 334 VWGDETTLLYGQDYITESLMGLDFRLSARSFLQLNPEQTEVLYEEAAKALDLSKDDTLID 393
Query: 305 LYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWH---NADNS 361
YAG G IGLSLA N+ Q+ +T++ + + N + + NA
Sbjct: 394 AYAGIGTIGLSLA-------------NRVKQVIGMETIADAVQDANNNATLNGVTNARYE 440
Query: 362 IEPLSWLVGS--------DVLVVDPPRKGLDSSLVHAL 391
+ P L+ D LVVDPPR GLD++L+ +
Sbjct: 441 VGPAEELLPKWRSQGQHFDALVVDPPRTGLDNALIDTI 478
>gi|429729312|ref|ZP_19263981.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
anaerobius VPI 4330]
gi|429144459|gb|EKX87571.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
anaerobius VPI 4330]
Length = 454
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 93/356 (26%), Positives = 160/356 (44%), Gaps = 52/356 (14%)
Query: 55 PHFQSCSGC-THEFNLHRPI-----IVDEATDFFKSIGLLDF-TFDSCRL---YGWRCRA 104
P + C GC E + + + IV E D + GL D D+ + + +R +A
Sbjct: 74 PKYSQCGGCQIQELDYKKQLELKTNIVRE--DLRRIGGLEDVEVLDAIGMENPFRYRNKA 131
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+ VR + IG Y++ +H+++D+ C + + +E++R I E N+ YDE
Sbjct: 132 QFPVRLENGKVKIGFYKKKSHDIIDVDKCVIQDVKNDEIIEIIRDYIAEENISIYDEKSH 191
Query: 165 TGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-----ESLAEFL 219
+G LR++ VT + +G+V + LV + ++ N D+L ES+ F
Sbjct: 192 SGVLRHI---VTKCG--------FTSGQVMVVLV--ATEDRFKNIDRLVGKLKESIEGF- 237
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+S+ N NVI G + + G+ +N+G + ++P SF Q
Sbjct: 238 -------------NSLVVNINKDRTNVILGRKNINKFGDGKIIDNIGDLKFEISPLSFFQ 284
Query: 280 ANTRAFDILLRKLQKY--VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
N +IL K ++ + G V D+Y G G I L L A+K V VEI E +
Sbjct: 285 VNPVQTEILYNKALEFADLKEGDRVFDIYCGIGSISLFL--AQKAEFVYGVEI-VEDAIK 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHAL 391
+ ++L +D + + P + G ++V+VVDPPRKG D ++ +
Sbjct: 342 DARINAKL-NGMDNLELFVGKAEEVVPEIYKQGKRANVVVVDPPRKGCDEKVLDTI 396
>gi|322374343|ref|ZP_08048857.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
C300]
gi|321279843|gb|EFX56882.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
C300]
Length = 455
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 140/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ V +LR ++ +++PY
Sbjct: 129 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFFIQDPVIDQVVVILRDLLRRYDLKPY 188
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P ++E L E L
Sbjct: 189 DEKEQSGLIR-----------NLVVRRGHYSGQIMVILVTTR-----PKVFRVEQLIEQL 232
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG W+ L G+ + + G D +A +F Q
Sbjct: 233 IKQFPE------IVSVMLNINDQNTNAIFGKEWKILYGQDYITDQMLGNDFQIAGPAFYQ 286
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + A V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 287 VNTEMAEKLYQTAIDFAELKADDVVIDAYSGIGTIGLSV--AKHVKEVYGVEVIPEAVEN 344
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K + L + + A+N++ +WL + V++VDPPRKGL S + A
Sbjct: 345 SQKNAA-LNNITNAHYVCDTAENAMR--NWLKEGIQPTVILVDPPRKGLTESFIKASAQT 401
Query: 395 GS 396
G+
Sbjct: 402 GA 403
>gi|419799184|ref|ZP_14324548.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
parasanguinis F0449]
gi|385698514|gb|EIG28870.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
parasanguinis F0449]
Length = 452
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 139/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ I P I+ V LR I+ +++PY
Sbjct: 126 YRNKAQVPVRRVNGQVETGFFRKNSHDLMPIEDFYIQDPVIDQVVLALRDLIRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E L
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHHSGEIMVILVTTR-----PKVFRVDQLIEQL 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ + I SV N N IFG WR L G+ + + G ++ +F Q
Sbjct: 230 IKQFPA------IKSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNSFQISGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELSEEDVVIDAYSGIGTIGLSV--AKHVKEVYGVEVIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K S L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 342 SQKNAS-LNGITNAHYVCDTAENAMK--NWLKEGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|403381649|ref|ZP_10923706.1| TrmA family RNA methyltransferase, partial [Paenibacillus sp. JC66]
Length = 362
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/303 (27%), Positives = 135/303 (44%), Gaps = 42/303 (13%)
Query: 100 WRCRAKLAV-RGTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
WR R K V G L+ G + +G+H +VD+ C H + V ++ ++L +
Sbjct: 33 WRYRNKAQVPFGEEEGGLVAGFFAKGSHRIVDMESCLIQHENNDEVVAAVKGIARDLGIT 92
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
YDE G LR+V V Y + G++ I L+ N N
Sbjct: 93 AYDEATHRGVLRHV---VVKYG--------FATGEIMIVLITNGTEIPRKNE-------- 133
Query: 218 FLWRNGGSRSREHY--IHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPS 275
W R RE + + S+ N + NVIFG+ + L G++ + +G + +++P
Sbjct: 134 --WIQ---RIREAFPDVLSICQNINSKRTNVIFGDEIKVLWGQSVIHDTIGDVKFAISPR 188
Query: 276 SFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
SF Q N + ++L RK +Y +V D Y G G I L L A+ + V VEI E
Sbjct: 189 SFYQVNPQQTEVLYRKALEYAQLSGEETVIDAYCGIGTISLFL--AQHAKKVYGVEIVPE 246
Query: 334 SQLSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWL---VGSDVLVVDPPRKGLDSSLV 388
+ +R+ ++G + A + E + W + +V+VVDPPRKG D +L+
Sbjct: 247 AIED-----ARINAELNGITNVEFAVGAAEHILPEWKNQGIRPEVIVVDPPRKGCDEALL 301
Query: 389 HAL 391
+
Sbjct: 302 ETI 304
>gi|251794918|ref|YP_003009649.1| TrmA family RNA methyltransferase [Paenibacillus sp. JDR-2]
gi|247542544|gb|ACS99562.1| RNA methyltransferase, TrmA family [Paenibacillus sp. JDR-2]
Length = 465
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 102/366 (27%), Positives = 146/366 (39%), Gaps = 59/366 (16%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYG------- 99
C + C GC + N R +VD + IG L + G
Sbjct: 75 CGIYDKCGGCQLQHMDYAAQLNWKRQHVVDA----LERIGKLQIAGEGEEASGITVHPTV 130
Query: 100 -----WRCRAKLAV-RGTSTSP---LIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQG 150
WR R K V G S + G Y +G+H ++D C H R + V +++
Sbjct: 131 GMNDPWRYRNKAQVPVGASAGAGELIAGFYAKGSHRIIDTDQCHIQHDRNDEVVRIVKAI 190
Query: 151 IKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSD 210
+EL V YDE+ G LR+V M T + + G++ + LV N R K P ++
Sbjct: 191 GRELGVSAYDEESGKGLLRHV-MTRTGFVS----------GEIMVVLVTNGR--KLPQAE 237
Query: 211 KLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDI 270
LW R+ + S+ N T NVIFG+ + L G ++ + GI
Sbjct: 238 --------LWVE-RIRAALPEVKSIVQNVNTRDTNVIFGDETKVLWGSEVIYDELDGIRF 288
Query: 271 SLAPSSFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCV 328
+++ SF Q N L R Y SV D Y G G I L L ARK V V
Sbjct: 289 AISARSFYQVNPSQTIELYRTAVDYAQLTGKESVIDAYCGIGTISLFL--ARKAGRVYGV 346
Query: 329 EINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDS 385
EI E + E + N S+ + W + DV+VVDPPRKG D
Sbjct: 347 EIVPE---AIEDAKRNAELNGISNASFEAGPAEVVIPRWREEGIIPDVIVVDPPRKGCDP 403
Query: 386 SLVHAL 391
+L+ +
Sbjct: 404 ALLDTI 409
>gi|227514178|ref|ZP_03944227.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus fermentum ATCC
14931]
gi|227087458|gb|EEI22770.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus fermentum ATCC
14931]
Length = 474
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 84/338 (24%), Positives = 147/338 (43%), Gaps = 58/338 (17%)
Query: 74 IVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVD 129
+V EA FK +G + T + YG+R +A+ VR + GLYQ +H VVD
Sbjct: 118 VVLEALAKFKPLGYRHYWVKDTLAAPHPYGYRNKAQFQVRMQDGHVVAGLYQADSHTVVD 177
Query: 130 IPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYR 189
+ C P + L + I+EL + Y+E +++G ++ +L E
Sbjct: 178 MQTCAVQMPGTMKVINTLVKLIEELAIPVYNEANQSGIIK-----------TLAVRESLA 226
Query: 190 NGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHY---IHSVWANFQTSTNNV 246
G++Q+ ++ N+ A+ + ++ + E + SV N +
Sbjct: 227 TGQIQVAIITNT--------------AKLIKKHALLVAIEDQLPEVTSVVQNVNPGDTPL 272
Query: 247 IFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGA--SVTD 304
++G+ L G+ E++ G+D L+ SF Q N ++L + K + ++ D
Sbjct: 273 VWGDETTLLYGQDYITESLMGLDFRLSARSFLQLNPEQTEVLYEEAAKALDLSKDDTLID 332
Query: 305 LYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWH---NADNS 361
YAG G IGLSLA N+ Q+ +T++ + + N + + NA
Sbjct: 333 AYAGIGTIGLSLA-------------NRVKQVIGMETIADAVQDANNNATLNGVTNARYE 379
Query: 362 IEPLSWLVGS--------DVLVVDPPRKGLDSSLVHAL 391
+ P L+ D LVVDPPR GLD++L+ +
Sbjct: 380 VGPAEELLPKWRSQGQHFDALVVDPPRTGLDNALIDTI 417
>gi|423456064|ref|ZP_17432917.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG5X1-1]
gi|401133320|gb|EJQ40952.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG5X1-1]
Length = 458
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 155/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNECGGCQLQHLTYEGQLKAK--EKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C +A ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDALIQEVKRICEKNGISAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKEAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----TKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 293 PEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 352
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 353 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|347549150|ref|YP_004855478.1| putative RNA methyltransferase [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|346982221|emb|CBW86215.1| Hypothetical RNA methyltransferase [Listeria ivanovii subsp.
ivanovii PAM 55]
Length = 453
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/350 (24%), Positives = 155/350 (44%), Gaps = 40/350 (11%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKL 106
C + C GC+ + + ++ + K IG L+ T + +R ++++
Sbjct: 76 CAVYSKCGGCSLQHLSYEGQLKFKRNQVEETMKRIGKLNVQVKETLGMENPWRYRNKSQV 135
Query: 107 AVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTG 166
V + G YQ+ +H+++D+ C H+ + + AV+ R+ + + EPY+E G
Sbjct: 136 PVGFVNGKLTAGFYQKRSHDIIDMTTCLIHNEQGDFAVQKTREILAKYGTEPYNEKTGKG 195
Query: 167 DLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDK-LESLAEFLWRNGGS 225
D+R++ R+ + Q+ LV + ++ P D+ + L E L
Sbjct: 196 DIRHIMT-------------RFAHTTGQLMLVLVTNKDRIPFKDEIIRDLTEQLT----- 237
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
+ S+ N NVIFG+R + L G+ + + GI +++ SF Q N
Sbjct: 238 ------LTSIVQNINPQKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPLQT 291
Query: 286 DILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
++L ++ + +V D Y G G I L L A+K + V VEI ++ + + +
Sbjct: 292 EVLYQQAIEAAELTGEETVIDAYCGIGSISLCL--AKKAKHVYGVEIVDQA-IQDARANA 348
Query: 344 RLPKSVDGNISWHNADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHAL 391
L + A+ I P + G +DVLVVDPPRKG D L+ +
Sbjct: 349 ALNALNNTTFETGKAEEVI-PAWYKAGIVADVLVVDPPRKGCDEKLLQTI 397
>gi|335028990|ref|ZP_08522503.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus infantis
SK1076]
gi|334269691|gb|EGL88105.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus infantis
SK1076]
Length = 452
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/322 (24%), Positives = 151/322 (46%), Gaps = 34/322 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + +P I+ + LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFYIQNPVIDQVILALRDLLRRYDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L Y +G++ + LV P ++E L E L
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGYHSGQIMVILVTTR-----PKVFRVEQLIEQL 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I S+ N N IFG WR L G+ + + G D ++ +F Q
Sbjct: 230 IKQFPE------IVSIMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQISGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELREDDVVIDAYSGIGTIGLSV--AKHVKEVYGVEVIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K S L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 342 SQKNAS-LNGITNAHYVCDTAENAMK--NWLKEGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GSAERKAKSLSESSSSMVKEEK 416
G+ ++ +S + ++M ++ K
Sbjct: 399 GA--KRIAYISCNVATMARDIK 418
>gi|433545211|ref|ZP_20501570.1| 23S rRNA (uracil-5-)-methyltransferase [Brevibacillus agri
BAB-2500]
gi|432183489|gb|ELK41031.1| 23S rRNA (uracil-5-)-methyltransferase [Brevibacillus agri
BAB-2500]
Length = 478
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 100/359 (27%), Positives = 156/359 (43%), Gaps = 57/359 (15%)
Query: 54 CPHFQSCSGCT-----HEFNL-HRPIIVDEATDFFKSIGLLDFTFDSCRLYG-------- 99
CP + C GC+ +E L H+ IV D + IG +
Sbjct: 93 CPLYDRCGGCSLQHLAYEEQLRHKQQIV---RDNLRRIGGFQVEGEGAITVHPTLGMSDP 149
Query: 100 WRCRAKLAV-RGTSTSPLIG-LYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
WR R K V G L+G Y E +H+++D+ C H + + AV +++ L ++
Sbjct: 150 WRYRNKAQVPIGEENGALVGGFYAEKSHSIIDMNECLIQHQKNDEAVATVKRAAAALGIK 209
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLA 216
PYDE TG LR+V + V ++ +V + E P DKL E++
Sbjct: 210 PYDEVRGTGLLRHVVVKVGVKTG-------------EVMVVLVTTAEAIPQRDKLVEAI- 255
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
R+ + S+ N NVIFG + L G ++ +G I +++ S
Sbjct: 256 ---------RTEVAGVTSIVQNINPDKTNVIFGKKTVTLWGSDVIYDYIGPIKFAISARS 306
Query: 277 FGQANTRAFDILLRKLQKYVPYGA----SVTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
F Q N ++L K +Y GA +V D Y G G I L L A+K + V VEI
Sbjct: 307 FYQVNPAQTEVLYNKTLEYA--GATGTETVIDAYCGIGTISLFL--AQKSKHVYGVEIVP 362
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLV 388
E+ + +RL V+ N ++ + +W + +DV+VVDPPRKG D +L+
Sbjct: 363 EAIADANRN-ARL-NGVE-NATFEAGPAEVVIPAWKEQGIRADVIVVDPPRKGCDEALL 418
>gi|227519503|ref|ZP_03949552.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis TX0104]
gi|424677787|ref|ZP_18114638.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV103]
gi|424679462|ref|ZP_18116284.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV116]
gi|424684330|ref|ZP_18121049.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV129]
gi|424686125|ref|ZP_18122794.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV25]
gi|424690749|ref|ZP_18127278.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV31]
gi|424693725|ref|ZP_18130137.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV37]
gi|424698214|ref|ZP_18134513.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV41]
gi|424700962|ref|ZP_18137142.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV62]
gi|424705213|ref|ZP_18141296.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV63]
gi|424707619|ref|ZP_18143593.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV65]
gi|424716638|ref|ZP_18145944.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV68]
gi|424720113|ref|ZP_18149232.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV72]
gi|424723566|ref|ZP_18152527.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV73]
gi|424726624|ref|ZP_18155282.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV81]
gi|424735135|ref|ZP_18163607.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV85]
gi|424747516|ref|ZP_18175689.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV93]
gi|424757779|ref|ZP_18185507.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
R508]
gi|227073028|gb|EEI10991.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis TX0104]
gi|402353849|gb|EJU88672.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV103]
gi|402356810|gb|EJU91534.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV116]
gi|402361899|gb|EJU96443.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV129]
gi|402363346|gb|EJU97833.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV31]
gi|402367929|gb|EJV02261.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV25]
gi|402372753|gb|EJV06859.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV37]
gi|402373105|gb|EJV07195.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV62]
gi|402373189|gb|EJV07276.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV41]
gi|402379941|gb|EJV13717.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV63]
gi|402384136|gb|EJV17707.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV65]
gi|402387565|gb|EJV21040.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV68]
gi|402394573|gb|EJV27737.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV72]
gi|402397714|gb|EJV30712.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV73]
gi|402399192|gb|EJV32083.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV81]
gi|402404399|gb|EJV37018.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV85]
gi|402406244|gb|EJV38802.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
R508]
gi|402408838|gb|EJV41292.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV93]
Length = 456
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/361 (23%), Positives = 149/361 (41%), Gaps = 58/361 (16%)
Query: 54 CPHFQSCSGCTHEFNLHRPII------VDEATDFFKSIGLLDF----TFDSCRLYGWRCR 103
CP +++C GC + ++ + + +A + FK + ++ T + +R +
Sbjct: 76 CPVYETCGGCQLQHLAYKAQLDFKKDLLKQALNKFKPVNYQNYELRKTIGMENPWNYRNK 135
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A+ +R GLYQ +H +V I +C P + L + + + YDE
Sbjct: 136 AQFQLRQIDGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERK 195
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-----ESLAEF 218
+G R + + V + G+VQ+ + ++++K P +K+ E L E
Sbjct: 196 NSGIFRTLMVRVGI-----------QTGEVQVVFI--TQSQKFPQKEKMVRAINEQLPEV 242
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ S+ N Q +++ G+ HL G+ E++ + L+P +F
Sbjct: 243 V--------------SIMQNVQNKKTSLVMGDDTLHLWGKESIEEHINDVVFDLSPRAFF 288
Query: 279 QANTRAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAA-ARKCRSVKCVEINKESQ 335
Q N +IL + K + +V D Y G G IGLSLA A + R + + +
Sbjct: 289 QLNPEQTEILYNEGIKALDLQPNETVVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDD- 347
Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWL---VGSDVLVVDPPRKGLDSSLVHA 390
+R G + H A + E L W D +VVDPPR GLD L+ A
Sbjct: 348 -------ARFNAKRLGVTNTHYAVGTAEDLLPKWFKEGFKPDAIVVDPPRTGLDRKLLTA 400
Query: 391 L 391
L
Sbjct: 401 L 401
>gi|289422275|ref|ZP_06424129.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
anaerobius 653-L]
gi|289157326|gb|EFD05937.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
anaerobius 653-L]
Length = 454
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 96/369 (26%), Positives = 156/369 (42%), Gaps = 78/369 (21%)
Query: 55 PHFQSCSGC-THEFNLHRPI-----IVDEATDFFKSIGLLDF-TFDSCRL---YGWRCRA 104
P + C GC E + + + IV E D + GL D D+ + + +R +A
Sbjct: 74 PKYSQCGGCQIQELDYKKQLELKTNIVRE--DLRRIGGLEDVEVLDAIGMENPFRYRNKA 131
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+ VR + IG Y++ +H+++D+ C + + +E++R I E N+ YDE
Sbjct: 132 QFPVRLENGKVKIGFYKKKSHDIIDVDKCVIQDVKNDEIIEIIRDYIAEENISIYDEKSH 191
Query: 165 TGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-----ESLAEFL 219
+G LR++ VT + +G+V + LV + ++ N DKL ES+ F
Sbjct: 192 SGVLRHI---VTKCG--------FTSGQVMVVLV--ATEDRFKNIDKLVGKLKESIEGFT 238
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
S+ N NVI G + + G+ +N+G + ++P SF Q
Sbjct: 239 --------------SLVVNINKDRTNVILGRKNINKFGDGKIVDNIGDLKFEISPLSFFQ 284
Query: 280 ANTRAFDILLRKLQKY--VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
N ++L K ++ + G V D+Y G G I L L A+K V VEI
Sbjct: 285 VNPVQTEVLYNKALEFADLKEGDRVFDVYCGIGSISLFL--AQKAEFVYGVEI------- 335
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWLVG---------------SDVLVVDPPRKG 382
V K N + DN L + VG ++V+VVDPPRKG
Sbjct: 336 ----VEDAIKDAMINAKLNGMDN----LEFFVGKAEEVVPEIYKQGKRANVVVVDPPRKG 387
Query: 383 LDSSLVHAL 391
D ++ +
Sbjct: 388 CDEKVLDTI 396
>gi|422729316|ref|ZP_16785717.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0012]
gi|315150202|gb|EFT94218.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0012]
Length = 456
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/361 (24%), Positives = 147/361 (40%), Gaps = 58/361 (16%)
Query: 54 CPHFQSCSGCTHEFNLHRPII------VDEATDFFKSIGLLDF----TFDSCRLYGWRCR 103
CP +++C GC + ++ + + +A + FK + ++ T + +R +
Sbjct: 76 CPVYETCGGCQLQHLAYKAQLDFKKDLLKQALNKFKPVNYQNYELRKTIGMENPWNYRNK 135
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A+ +R GLYQ +H +V I +C P + L + + + YDE
Sbjct: 136 AQFQLRQIDGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERK 195
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-----ESLAEF 218
+G R + + V + G+VQ+ + S+ K P +K+ E L E
Sbjct: 196 NSGIFRTLMVRVGI-----------QTGEVQVVFITQSK--KFPQKEKMVRAINEQLPEV 242
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ S+ N Q +++ G+ HL G+ E++ + L+P +F
Sbjct: 243 V--------------SIMQNVQNKKTSLVMGDDTLHLWGKESIEEHINDVVFDLSPRAFF 288
Query: 279 QANTRAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAA-ARKCRSVKCVEINKESQ 335
Q N +IL + K + +V D Y G G IGLSLA A + R + + +
Sbjct: 289 QLNPEQTEILYNEGIKALDLQPNETVVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDD- 347
Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWL---VGSDVLVVDPPRKGLDSSLVHA 390
+R G + H A + E L W D +VVDPPR GLD L+ A
Sbjct: 348 -------ARFNAKRLGVTNTHYAVGTAEDLLPKWFKEGFKPDAIVVDPPRTGLDRKLLTA 400
Query: 391 L 391
L
Sbjct: 401 L 401
>gi|392428518|ref|YP_006469529.1| RNA methyltransferase [Streptococcus intermedius JTH08]
gi|391757664|dbj|BAM23281.1| RNA methyltransferase [Streptococcus intermedius JTH08]
Length = 451
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 84/333 (25%), Positives = 152/333 (45%), Gaps = 38/333 (11%)
Query: 91 TFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQG 150
T R G+R +A++ VR + G +++ +H+++ I P I+ + R
Sbjct: 117 TLGMERPLGYRNKAQIPVRRVNGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDL 176
Query: 151 IKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSD 210
++ +++PYDE ++TG +R +L + +G++ + LV P
Sbjct: 177 LRRFDLKPYDEREKTGLIR-----------NLVVRRGHYSGEIMVILVTTR-----PKIL 220
Query: 211 KLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDI 270
++E L E L + I S+ N N IFG WR L G + + D
Sbjct: 221 RVEQLIERLVEAFPA------IESIMQNINDQNTNTIFGKDWRTLHGRDYITDRMLNNDF 274
Query: 271 SLAPSSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCV 328
+A +F Q NT + L + + A V D Y+G G IGLS+ A++ + V V
Sbjct: 275 QIAAPAFYQVNTEMAEKLYQTAIDFSELAADDVVLDAYSGIGTIGLSV--AKQVKQVYGV 332
Query: 329 EINKESQLSFEKTVSRLPKSVDGNISWH----NADNSIEPLSWL-VGSDVLVVDPPRKGL 383
E+ E+ + +K ++G + H +A+N++ S + DV++VDPPRKGL
Sbjct: 333 EVIPEAVENSQKNA-----EINGITNTHYVCDSAENAMANWSKQDIKPDVILVDPPRKGL 387
Query: 384 DSSLVHALQSIGSAERKAKSLSESSSSMVKEEK 416
S + + S+ +K +S + ++M ++ K
Sbjct: 388 TESFIES--SVSMEPKKIIYISCNPATMARDIK 418
>gi|431186433|ref|ZP_19500122.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1620]
gi|430572791|gb|ELB11636.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1620]
Length = 460
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/361 (22%), Positives = 155/361 (42%), Gaps = 56/361 (15%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRC 102
CP + C GC + + + +++ +A + FK G + T + +R
Sbjct: 76 CPVYYECGGCQLQHLAYQAQLDFKKDLLL-QALEKFKPAGFRSYQLLPTIGMDEPWHYRN 134
Query: 103 RAKLAVRGTSTSPLI--GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYD 160
+A+ +R + I GLY+ +H +V I C PR + + Q + + + YD
Sbjct: 135 KAQFQLRKNKQTQKIEAGLYEANSHQLVPITDCLVQEPRTQKVMNTVVQLLNKFDAPIYD 194
Query: 161 EDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLW 220
E +G R + + + + G++Q+ V+ +R++K P + +
Sbjct: 195 ERTNSGIFRTIMVRIGV-----------KTGELQV--VFITRSKKFPQKNA-------MI 234
Query: 221 RNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQA 280
R R E + S+ N Q +++ G+ HL G+ E + + L+P +F Q
Sbjct: 235 REINERLPE--VVSIMQNVQAQKTSLVMGDETIHLWGKEAIEEQINEVTFDLSPRAFFQL 292
Query: 281 NTRAFDILLRKLQKY--VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSF 338
N + ++L + K V ++ D Y G G IGLS+ A++ + V+ ++ ++
Sbjct: 293 NPQQTELLYDEGIKALDVQPNETIVDAYCGVGTIGLSV--AKQAKEVRGMDTVPQAIADA 350
Query: 339 EKTVSRLPKSVDGNISWHNADNSIEPL-----SWL---VGSDVLVVDPPRKGLDSSLVHA 390
+K RL +HN + WL D ++VDPPR GLD++L+ +
Sbjct: 351 KKNAERL--------GYHNTRYEVGTAEQVLPKWLNEGFQPDGIIVDPPRTGLDNALIQS 402
Query: 391 L 391
L
Sbjct: 403 L 403
>gi|153956154|ref|YP_001396919.1| tRNA (uracil-5-)-methyltransferase-like protein [Clostridium
kluyveri DSM 555]
gi|146349012|gb|EDK35548.1| TRNA (uracil-5-)-methyltransferase-related protein [Clostridium
kluyveri DSM 555]
Length = 469
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 138/311 (44%), Gaps = 56/311 (18%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
Y +R + +L V + IG Y + +H ++++ C + V+L+RQ I++ N+E
Sbjct: 140 YRYRNKVQLPVGSSKNGINIGFYAKKSHEIINMTSCFIQSETSDKIVKLIRQWIEKYNIE 199
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
PY+E + G +R++ + E + ++ + +V + + E
Sbjct: 200 PYNEKNGKGIIRHIMI-----------REAFTTAEIMVVIVTAVSHLPYK-----KEFIE 243
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
+ RN I S+ N NVI G L G + +G S++P SF
Sbjct: 244 IITRN------VPVIKSIVQNINRDRTNVIMGKECIILWGRDTINDYIGKFKFSISPLSF 297
Query: 278 GQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q N ++L K+ +Y + + D Y G G I L L ++K + V VEI
Sbjct: 298 FQVNPVQTEVLYNKVLEYAGLTGNEVIFDAYCGTGTISLFL--SQKAKKVYGVEI----- 350
Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVG---------------SDVLVVDPPR 380
+P++++ N + + A+N I+ + ++ G +DV+VVDPPR
Sbjct: 351 ---------IPQAIE-NANMNAAENGIDNVEFITGKSEKVIPELIKKGVRADVVVVDPPR 400
Query: 381 KGLDSSLVHAL 391
KG + +L+H++
Sbjct: 401 KGCEEALLHSI 411
>gi|429762233|ref|ZP_19294633.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerostipes hadrus
DSM 3319]
gi|429182047|gb|EKY23172.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerostipes hadrus
DSM 3319]
Length = 457
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/307 (27%), Positives = 135/307 (43%), Gaps = 45/307 (14%)
Query: 98 YGWRCRAKLAVRGTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVEL-LRQGIKELN 155
+ +R +A+ V LI G Y TH+++D HC HP +N + L + +K+ N
Sbjct: 127 FYYRNKAQFPVGYDKEGNLITGFYAGRTHHIIDCTHCMIQHP-VNEQILLKVLDYMKKNN 185
Query: 156 VEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESL 215
+ YDE G +R++ V ++ G++ + LV N + N LE L
Sbjct: 186 ITAYDEKTHKGLVRHIVTRVG-----------FKTGEIMVCLVVNGSKKNLRN---LEML 231
Query: 216 AEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPS 275
+ L G + S+ N N I G++ + G+ ++ +G + + P
Sbjct: 232 VDSLTEVEG-------MTSICVNINKEKTNRILGSKTEEVYGKPYIYDYIGNVKYQIGPL 284
Query: 276 SFGQANTRAFDILLRKLQKYVPYGASVT--DLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
SF Q N +L K +Y T DLY G G I L L A+K + V VEI KE
Sbjct: 285 SFFQVNPTQTKVLYEKAMEYADLKGEETVWDLYCGIGTISLFL--AQKAKKVYGVEIVKE 342
Query: 334 SQLSFEKTVSRLPKSVDGNISWHNAD------NSIEPLSWL---VGSDVLVVDPPRKGLD 384
+ +RL ++G + NA+ + P + V +D +VVDPPRKG D
Sbjct: 343 AIDD-----ARLNAKMNG---FDNAEFFVGKAEEVLPREYEKNGVYADTIVVDPPRKGCD 394
Query: 385 SSLVHAL 391
S L+ +
Sbjct: 395 SKLLETM 401
>gi|365156601|ref|ZP_09352906.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus smithii
7_3_47FAA]
gi|363627141|gb|EHL78081.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus smithii
7_3_47FAA]
Length = 462
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 91/352 (25%), Positives = 145/352 (41%), Gaps = 42/352 (11%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYG------WRCRA 104
CP + C GC + + I D IG + D+ L WR R
Sbjct: 81 CPLYHECGGCQLQHVSYEGQLKIKEKHVQDCLVRIGKIT---DAKVLPALGMETPWRYRN 137
Query: 105 KLAV-RGTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
K V G LI G Y++ +H ++++ C + + ++ ++ + PYDE
Sbjct: 138 KAQVPVGQRNGKLIAGFYKKRSHEIMEMDACIIQQKQTDETIQAVKDICARYRIRPYDEK 197
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
G LR++ + RY +I +V +R + P+ K+ + E R
Sbjct: 198 QHKGILRHIMV-------------RYGRTSGEIMVVLITRTKDLPHKKKI--VQEIKARV 242
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
G RS + N + NVI G L G ++++G + +++ SF Q N
Sbjct: 243 PGVRS-------IIQNVNSKRTNVILGEETIVLWGRDVIYDSIGDVQFAISAKSFYQVNP 295
Query: 283 RAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+L K +Y +V D Y G G I L LA +K + V VEI E+ + K
Sbjct: 296 EQTKVLYDKALEYAELKGDETVIDAYCGIGTISLFLA--KKAKKVYGVEIVPEA-IEDAK 352
Query: 341 TVSRLPKSVDGNISWHNADNSI-EPLSWLVGSDVLVVDPPRKGLDSSLVHAL 391
+ L + + A+ I E V +DVLVVDPPRKG D +L+ +
Sbjct: 353 KNAELNGITNAEFAAGKAEEVIPEWYQRGVKADVLVVDPPRKGCDPALLETI 404
>gi|418193663|ref|ZP_12830155.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47439]
gi|419442515|ref|ZP_13982546.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA13224]
gi|353859643|gb|EHE39593.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47439]
gi|379554482|gb|EHZ19562.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA13224]
Length = 543
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 139/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVVLVTTR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + + D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKKDDVIIDAYSGIGTIGLSV--AKHVKEVYGVELIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K S L K + + A+N+++ WL + V++VDPPRKGL S + A
Sbjct: 342 SQKNAS-LNKITNAHYVCDTAENAMK--KWLKEGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|227363773|ref|ZP_03847880.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
reuteri MM2-3]
gi|325682984|ref|ZP_08162500.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri
MM4-1A]
gi|227071130|gb|EEI09446.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
reuteri MM2-3]
gi|324977334|gb|EGC14285.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri
MM4-1A]
Length = 480
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 86/341 (25%), Positives = 151/341 (44%), Gaps = 66/341 (19%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
Y +R +A++ V+ G Y+ G+HN+V I P I+ A+ ++R +++ ++
Sbjct: 149 YHYRNKAQVPVKMVHGQLETGFYKRGSHNLVPIEDFYIQDPEIDKAIVVVRDLLRQYHIT 208
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRN---EKSPNSDKLES 214
PYDE G +R V + Y + ++ + LV N++ EK +
Sbjct: 209 PYDEQTGKGVIRTVMV-----------RRGYYSHEMMVVLVTNTKRLPMEKQIVDGIVAG 257
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
+ E + S+ N N + GN+ + L G + + + GID +++P
Sbjct: 258 VPE--------------VKSIVQNINDKRTNRLLGNKNKTLWGADEIHDQLLGIDFAISP 303
Query: 275 SSFGQANTRAFDILLRKL--QKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
SF Q N + + L + + +V D Y G G I SLA A+ + V VEI
Sbjct: 304 LSFYQVNPQQTERLYQTAIDNAGLDGNQTVIDAYCGIGTI--SLAVAKHAKQVYGVEI-- 359
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNAD-NSIEPLSWLVGS---------------DVLVV 376
+P +++ + HNA N I+ ++VG DV++V
Sbjct: 360 ------------VPAAIED--AKHNAKRNGIKNAKFVVGKAEEQFAKWQAEGLKPDVVIV 405
Query: 377 DPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKR 417
DPPRKGL SL+ A +G +K +S + +++V++ KR
Sbjct: 406 DPPRKGLAESLIEATGKMGP--KKVIYVSCNPATLVRDIKR 444
>gi|81429157|ref|YP_396158.1| RNA methyltransferase [Lactobacillus sakei subsp. sakei 23K]
gi|78610800|emb|CAI55851.1| Putative RNA methyltransferase [Lactobacillus sakei subsp. sakei
23K]
Length = 454
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 74/323 (22%), Positives = 147/323 (45%), Gaps = 68/323 (21%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + + G Y++ +H V+ + P+I+ A++++R ++ ++P
Sbjct: 128 GYRNKAQVPVRFIDGALMTGFYRKHSHQVMPMEDFYIQDPKIDEAIKVVRDILRRFYIDP 187
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-----E 213
Y+ED G LR + + Y+ ++ +V+ +R++K P + ++ +
Sbjct: 188 YNEDTHKGVLRTIMVRRGYYSH-------------EMMIVFITRSKKLPAAREIAIEIKK 234
Query: 214 SLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLA 273
+L E + S+ N + NVIFG++ + + G + + G+ ++
Sbjct: 235 ALPEVV--------------SIMQNVNAAQTNVIFGDQTKLIAGRDFIRDELMGLKFEIS 280
Query: 274 PSSFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEIN 331
SF Q N ++L +K + +V D Y+G G I SLA A+ + V VE+
Sbjct: 281 AQSFYQVNPVQTEVLYQKAIEAAELTGNETVIDAYSGIGTI--SLAVAKHAKQVYGVEVV 338
Query: 332 KESQLSFEKTVSRLPKSVDGNISWHNAD-NSIEPLSWLVGS---------------DVLV 375
+ + + + HNA N+I+ + + +G D L+
Sbjct: 339 ESAVMD----------------ARHNAKINAIDNVEFTLGKAEDVMAQWQTDGLQVDALI 382
Query: 376 VDPPRKGLDSSLVHALQSIGSAE 398
VDPPRKGL+ S + A+ + A+
Sbjct: 383 VDPPRKGLEPSFIEAVGQLKPAK 405
>gi|418069636|ref|ZP_12706913.1| tRNA (uracil-5-)-methyltransferase related enzyme [Pediococcus
acidilactici MA18/5M]
gi|357536167|gb|EHJ20198.1| tRNA (uracil-5-)-methyltransferase related enzyme [Pediococcus
acidilactici MA18/5M]
Length = 455
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 157/323 (48%), Gaps = 33/323 (10%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR G ++ G+H++V I P I+ + +R ++E +EP
Sbjct: 129 GYRNKAQVPVRKVKGQLATGFFKRGSHDLVPIEDFYIQDPVIDQVILKVRDILREYQIEP 188
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++ G +R ++ R+G++ + L+ ++ + L+ +A
Sbjct: 189 YDEINQRGVVR-----------NIMVRRGRRSGEIMVVLIT-----RTSSVSHLDEIAAA 232
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ + G + SV N NVI G R L GE+ + + G ++ SF
Sbjct: 233 IHQIDG-------VVSVIQNINPKQTNVIMGKEDRLLAGESVIHDELLGQKFIISAHSFY 285
Query: 279 QANTRAFDILLR-KLQKYVPYGA-SVTDLYAGAGVIGLSLA-AARKCRSVKCV-EINKES 334
Q N + L + ++K G +V D+Y+G G I L++A AA+K V+ V E +++
Sbjct: 286 QVNPVQTEKLYQLAIEKAGLTGKETVLDVYSGIGTISLAMAQAAKKVYGVEIVKEAVQDA 345
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSI 394
+++ + ++ K V G A E + DV+VVDPPRKGLD S+++A ++
Sbjct: 346 KVNAVQNQAKNVKFVVGKAEDQMAKWQAEGMQ----PDVVVVDPPRKGLDESVINA--TV 399
Query: 395 GSAERKAKSLSESSSSMVKEEKR 417
A ++ +S + +++V++ R
Sbjct: 400 AMAPKRVVYVSCNPATLVRDIDR 422
>gi|194018043|ref|ZP_03056649.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus pumilus ATCC
7061]
gi|194010288|gb|EDW19864.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus pumilus ATCC
7061]
Length = 461
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 87/376 (23%), Positives = 154/376 (40%), Gaps = 81/376 (21%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVD----------EATDFFKSIGLLDFTFDSCR 96
CP ++ C GC + R I++ E D +IG+ D
Sbjct: 80 CPVYEECGGCQLQHLAYEQQLKEKRDIVIQSMERHTKISVEKLDIRPTIGMED------- 132
Query: 97 LYGWRCRAKLAV-RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELN 155
+ +R +++ V R S + GLY +H +V I C HP+ N ++R+ +++
Sbjct: 133 PWHYRNKSQFQVGRSHSGDIIAGLYGLNSHKLVPIKECIVQHPKTNKTTGVVRKILEKFG 192
Query: 156 VEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESL 215
V Y+E R GD+R + + V + G+VQ+ LV + P K + +
Sbjct: 193 VSVYNERTRKGDVRSIVVRVG-----------FETGEVQVVLVTS-----KPEFPKKKEI 236
Query: 216 AEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPS 275
AE + + R + S+ N +VIFG++ HL G E +G + L+
Sbjct: 237 AEAIQK------RLPEVTSIMHNINGEKTSVIFGHKTSHLAGNMVIQEFLGDVSFELSAR 290
Query: 276 SFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
+F Q N + L + +K + D Y G G IG+ L+ + V+ +++ KE
Sbjct: 291 AFFQLNPKQTLKLYDEAKKAAKLTGKEKIVDAYCGVGTIGMWLSDG--AKEVRGMDVIKE 348
Query: 334 SQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDP 378
S +K N H N+ +++ G+ DV+VVDP
Sbjct: 349 SIDDAKK-----------NAKKHGMKNA----TYVTGTAEHWLPKWVKEGFRPDVIVVDP 393
Query: 379 PRKGLDSSLVHALQSI 394
PR G + + + ++ +
Sbjct: 394 PRTGCERTFLDTVKQV 409
>gi|402301639|ref|ZP_10820925.1| RNA methyltransferase [Bacillus alcalophilus ATCC 27647]
gi|401723280|gb|EJS96797.1| RNA methyltransferase [Bacillus alcalophilus ATCC 27647]
Length = 470
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 86/360 (23%), Positives = 149/360 (41%), Gaps = 56/360 (15%)
Query: 54 CPHFQSCSGCTHEFNLHRPI------IVDEATDFFKSIGL----LDFTFDSCRLYGWRCR 103
CP + C GC + ++ +V +A + F + + ++ T + +R +
Sbjct: 88 CPIYDKCGGCQLQHLKYKSTLREKRDVVIQALERFTKLNINQLSINETIGMDDPWYYRNK 147
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
++L V + GLY +H ++D+ C H N E+++Q + + N+ YDE
Sbjct: 148 SQLQVGKKGNQVIAGLYAMKSHELIDLSACMVQHKATNKVTEVVKQILTDFNISIYDERK 207
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNG 223
R G +R + V + G+VQ+ LV PN +L + + +
Sbjct: 208 RRGLIRTIVTRVG-----------FETGQVQVVLVTTD-----PNIPRLNLITDEI---- 247
Query: 224 GSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTR 283
+ R + S N ++IFG + HL GE E +G I L+ +F Q N +
Sbjct: 248 --KKRLPEVTSFQLNINNKKTSLIFGEKTVHLDGEEVIEEKLGDISFDLSARAFFQLNPK 305
Query: 284 AFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLA-AARKCRSVKCVEIN-KESQLSFE 339
L + +K + D Y G G IGL LA A + R + +E + K+++ + E
Sbjct: 306 QTVKLYNEAKKAAKLSGKEKIVDAYCGVGTIGLWLANDAAEVRGMDVIEASIKDARKNAE 365
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLS-WLVG-------SDVLVVDPPRKGLDSSLVHAL 391
K + + + P WL DV+VVDPPR G D L+ ++
Sbjct: 366 KH------------GYDHMRYEVGPAEEWLPKWVKEGWQPDVVVVDPPRTGCDDKLLQSI 413
>gi|317498564|ref|ZP_07956857.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 5_1_63FAA]
gi|316894051|gb|EFV16240.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 5_1_63FAA]
Length = 360
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 85/307 (27%), Positives = 135/307 (43%), Gaps = 45/307 (14%)
Query: 98 YGWRCRAKLAVRGTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVEL-LRQGIKELN 155
+ +R +A+ V LI G Y TH+++D HC HP +N + L + +K+ N
Sbjct: 28 FYYRNKAQFPVGYDKEGNLITGFYAGRTHHIIDCTHCMIQHP-VNEQILLKVLDYMKKNN 86
Query: 156 VEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESL 215
+ YDE G +R++ V ++ G++ + LV N + N LE L
Sbjct: 87 ITAYDEKTHKGLVRHIVTRVG-----------FKTGEIMVCLVVNGSKKNLRN---LEML 132
Query: 216 AEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPS 275
+ L G + S+ N N I G++ + G+ ++ +G + + P
Sbjct: 133 VDSLTEVEG-------MTSICVNINKEKTNRILGSKIEEVYGKPYIYDYIGNVKYQIGPL 185
Query: 276 SFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
SF Q N +L K +Y V DLY G G I L LA +K + V VEI KE
Sbjct: 186 SFFQVNPTQTKVLYEKAMEYADLKGEEIVWDLYCGIGTISLFLA--QKAKKVYGVEIVKE 243
Query: 334 SQLSFEKTVSRLPKSVDGNISWHNAD------NSIEPLSWL---VGSDVLVVDPPRKGLD 384
+ +RL ++G + NA+ + P + V +D +VVDPPRKG D
Sbjct: 244 AIDD-----ARLNAKMNG---FDNAEFFVGKAEEVLPREYEKNGVYADTIVVDPPRKGCD 295
Query: 385 SSLVHAL 391
S L+ +
Sbjct: 296 SKLLETM 302
>gi|406983541|gb|EKE04720.1| hypothetical protein ACD_20C00016G0008 [uncultured bacterium]
Length = 461
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 98/359 (27%), Positives = 160/359 (44%), Gaps = 56/359 (15%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVDEATDFFKSIGLLDF-TFD---SCRLYGWRC 102
C + C GC + + I+ D K I +D FD S +RC
Sbjct: 76 CSLSKVCGGCQWLYVDYQEQLRAKKKIV----EDSLKKIAHVDIPVFDVIPSDYQLEYRC 131
Query: 103 RAKLAVRGTSTSP--LIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYD 160
+ + V+ T S L G Y++ TH +V+I +C IN + +R+ +ELN+ Y
Sbjct: 132 KIQFPVQQTKVSKRILAGYYKKATHEIVNIKYCPIQPEIINGITQFIREKAQELNLTAYS 191
Query: 161 EDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLW 220
E+ R G +R++ + Y+ +L + +V NS ++ P DKL L + +
Sbjct: 192 ENTRKGLIRHLVYRYSQYDKNL-----------LLIIVINS--QEIP--DKLNQLCKIVM 236
Query: 221 RNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQA 280
+ +E + + NF TS NVI N+ + G EN+ G ++ SSF Q
Sbjct: 237 ----NEYKE--LAGILVNFNTSGTNVIMSNKTELVCGSDYIEENLEGKVFKVSASSFFQV 290
Query: 281 N----TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
N + F+ + + +QK + ++ D+YAG G + L + +E N + +
Sbjct: 291 NPAVAVKIFNEVHKIVQKKME-KPTILDVYAGVGTFSIWLKDL--ASKITAIEENPHA-V 346
Query: 337 SFEKTVSRLPKS---VDGNISWHNADNSIEPLSWLVGS----DVLVVDPPRKGLDSSLV 388
S K +L KS VD + NAD E L LV + D+ V+DPPRKG S+ +
Sbjct: 347 SDAKENIKLNKSANDVDIEMIEGNAD---EVLQTLVNNNRTFDITVLDPPRKGCSSAAI 402
>gi|419777531|ref|ZP_14303443.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
intermedius SK54]
gi|383845011|gb|EID82421.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
intermedius SK54]
Length = 480
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/333 (25%), Positives = 152/333 (45%), Gaps = 38/333 (11%)
Query: 91 TFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQG 150
T R G+R +A++ VR + G +++ +H+++ I P I+ + R
Sbjct: 146 TLGMERPLGYRNKAQIPVRRVNGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDL 205
Query: 151 IKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSD 210
++ +++PYDE ++TG +R +L + +G++ + LV P
Sbjct: 206 LRRFDLKPYDEREKTGLIR-----------NLVVRRGHYSGEIMVILVTTR-----PKIL 249
Query: 211 KLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDI 270
++E L E L + I S+ N N IFG WR L G + + D
Sbjct: 250 RVEQLIERLVEAFPA------IESIMQNINDQNTNTIFGKDWRTLHGRDYITDRMLNNDF 303
Query: 271 SLAPSSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCV 328
+A +F Q NT + L + + A V D Y+G G IGLS+ A++ + V V
Sbjct: 304 QIAAPAFYQVNTEMAEKLYQTAIDFSELAADDVVLDAYSGIGTIGLSV--AKQVKQVYGV 361
Query: 329 EINKESQLSFEKTVSRLPKSVDGNISWH----NADNSIEPLSWL-VGSDVLVVDPPRKGL 383
E+ E+ + +K ++G + H +A+N++ S + DV++VDPPRKGL
Sbjct: 362 EVIPEAVENSQKNA-----EINGITNTHYVCDSAENAMANWSKQDIKPDVILVDPPRKGL 416
Query: 384 DSSLVHALQSIGSAERKAKSLSESSSSMVKEEK 416
S + + S+ +K +S + ++M ++ K
Sbjct: 417 TESFIES--SVSMEPKKIIYISCNPATMARDIK 447
>gi|294619066|ref|ZP_06698561.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1679]
gi|291594727|gb|EFF26109.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1679]
Length = 460
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 82/361 (22%), Positives = 155/361 (42%), Gaps = 56/361 (15%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRC 102
CP + C GC + + + +++ +A + FK G + T + +R
Sbjct: 76 CPVYYECGGCQLQHLAYQAQLDFKKDLLL-QALEKFKPAGFRSYQLLPTIGMDEPWHYRN 134
Query: 103 RAKLAVRGTSTSPLI--GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYD 160
+A+ +R + I GLY+ +H +V I C PR + + Q + + + YD
Sbjct: 135 KAQFQLRKNKQTQKIEAGLYEANSHQLVPITDCLVQEPRTQKVMNTVVQLLNKFDAPIYD 194
Query: 161 EDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLW 220
E +G R + + + + G++Q+ V+ +R++K P + +
Sbjct: 195 ERTNSGIFRTIMVRIGV-----------KTGELQV--VFITRSKKFPQKNA-------MI 234
Query: 221 RNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQA 280
R R E + S+ N Q +++ G+ HL G+ E + + L+P +F Q
Sbjct: 235 REINERLPE--VVSIMQNVQAQKTSLVMGDETIHLWGKEAIEEQINEVTFDLSPRAFFQL 292
Query: 281 NTRAFDILLRKLQKY--VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSF 338
N + ++L + K V ++ D Y G G IGLS+ A++ + V+ ++ ++
Sbjct: 293 NPQQTELLYGEGIKALDVQPNETIVDAYCGVGTIGLSV--AKQAKEVRGMDTVPQAIADA 350
Query: 339 EKTVSRLPKSVDGNISWHNADNSIEPL-----SWL---VGSDVLVVDPPRKGLDSSLVHA 390
+K RL +HN + WL D ++VDPPR GLD++L+ +
Sbjct: 351 KKNAERL--------GYHNTRYEVGTAEQVLPKWLNEGFQPDGIIVDPPRTGLDNALIQS 402
Query: 391 L 391
L
Sbjct: 403 L 403
>gi|229148722|ref|ZP_04276972.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1550]
gi|228634730|gb|EEK91309.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1550]
Length = 454
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 87/354 (24%), Positives = 154/354 (43%), Gaps = 44/354 (12%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIG-LLDF----TFDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L D + +R
Sbjct: 74 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLADVPVHPVLGMKNPWVYRN 131
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 132 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEE 191
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL--ESLAEFLW 220
G LR+V MA RY +I LV+ +R + PN + E +A+F
Sbjct: 192 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIVAKF-- 236
Query: 221 RNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQA 280
+ S+ N T NVIFG++ L G ++ +G I +++ SF Q
Sbjct: 237 ---------PEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQV 287
Query: 281 NTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
N +L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 288 NPEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANR 347
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 348 NAA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 398
>gi|387909435|ref|YP_006339741.1| trNA methyltransferase, TrmA family [Streptococcus thermophilus
MN-ZLW-002]
gi|387574370|gb|AFJ83076.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus
MN-ZLW-002]
Length = 453
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 90/367 (24%), Positives = 162/367 (44%), Gaps = 49/367 (13%)
Query: 64 THEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGL 119
T + R +VD + +K+ G+ D T Y +R +A++ VR G
Sbjct: 89 TEQLKFKRKQVVD---NLYKTAGISDVEVAETLGMETPYAYRNKAQVPVRRVKGQLETGF 145
Query: 120 YQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYN 179
Y++ +H+++ I I+ + +R ++ +++PYDE ++TG +R++ + Y+
Sbjct: 146 YRKNSHDLIPIEDFLIQDKEIDKLIVFVRDLLRRYDLKPYDEKEQTGLIRHLVVRRGHYS 205
Query: 180 TSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHY--IHSVWA 237
Q+ LV+ + K D++ ++ E + I S+
Sbjct: 206 G-------------QMMLVFVTTKPKVFRIDQV-----------IAKITEAFPSIVSIIQ 241
Query: 238 NFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVP 297
N N IFG +R L G+ +++ G D ++ SF Q NT + L + +
Sbjct: 242 NINDKNTNAIFGKEFRTLYGQDTITDSMLGNDYEISAQSFYQVNTEMAEKLYQIAIDFSD 301
Query: 298 YGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISW 355
+ V D Y+G G IGLS A++ R V VE+ + + +K R +G +
Sbjct: 302 LNSDSIVIDAYSGIGTIGLSF--AKQVREVYGVEVIETAVEDAKKNAER-----NGITNA 354
Query: 356 HNADNSIE--PLSWL---VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSS 410
H +S E W + DV++VDPPRKGL S + A S+ K +S + ++
Sbjct: 355 HYVADSAENAMAKWSQDGIKPDVIIVDPPRKGLTESFIKA--SVAMQPEKITYVSCNPAT 412
Query: 411 MVKEEKR 417
M ++ KR
Sbjct: 413 MARDIKR 419
>gi|69248258|ref|ZP_00604692.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium DO]
gi|257880209|ref|ZP_05659862.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,230,933]
gi|257883010|ref|ZP_05662663.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,231,502]
gi|257891407|ref|ZP_05671060.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,231,410]
gi|257893596|ref|ZP_05673249.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,231,408]
gi|260560493|ref|ZP_05832667.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium C68]
gi|289565178|ref|ZP_06445630.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
D344SRF]
gi|293563312|ref|ZP_06677762.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1162]
gi|293569307|ref|ZP_06680605.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1071]
gi|294614976|ref|ZP_06694865.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1636]
gi|294621465|ref|ZP_06700634.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
U0317]
gi|314939803|ref|ZP_07847023.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0133a04]
gi|314943901|ref|ZP_07850627.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0133C]
gi|314949998|ref|ZP_07853291.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0082]
gi|314953520|ref|ZP_07856432.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0133A]
gi|314994278|ref|ZP_07859580.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0133B]
gi|314995146|ref|ZP_07860262.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0133a01]
gi|383328661|ref|YP_005354545.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecium
Aus0004]
gi|389868133|ref|YP_006375556.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
faecium DO]
gi|406580539|ref|ZP_11055732.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus sp. GMD4E]
gi|406582626|ref|ZP_11057724.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus sp. GMD3E]
gi|406585031|ref|ZP_11060027.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus sp. GMD2E]
gi|406591236|ref|ZP_11065530.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus sp. GMD1E]
gi|410937092|ref|ZP_11368954.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus sp.
GMD5E]
gi|415891354|ref|ZP_11549695.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E4453]
gi|416139374|ref|ZP_11599161.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E4452]
gi|424789787|ref|ZP_18216413.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
V689]
gi|424794415|ref|ZP_18220384.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
S447]
gi|424835224|ref|ZP_18259893.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R501]
gi|424853579|ref|ZP_18277950.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R499]
gi|424867342|ref|ZP_18291147.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R497]
gi|424949520|ref|ZP_18365183.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R496]
gi|424954062|ref|ZP_18368981.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R494]
gi|424956980|ref|ZP_18371733.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R446]
gi|424960143|ref|ZP_18374687.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1986]
gi|424962619|ref|ZP_18376942.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1190]
gi|424966813|ref|ZP_18380568.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1140]
gi|424970342|ref|ZP_18383861.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1139]
gi|424974441|ref|ZP_18387673.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1137]
gi|424979509|ref|ZP_18392358.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1123]
gi|424982624|ref|ZP_18395265.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV99]
gi|424983945|ref|ZP_18396505.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV69]
gi|424986177|ref|ZP_18398621.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV38]
gi|424991625|ref|ZP_18403765.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV26]
gi|424993923|ref|ZP_18405894.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV168]
gi|424997013|ref|ZP_18408786.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV165]
gi|425000706|ref|ZP_18412257.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV161]
gi|425005009|ref|ZP_18416288.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV102]
gi|425007533|ref|ZP_18418656.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV1]
gi|425010019|ref|ZP_18420995.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E422]
gi|425014461|ref|ZP_18425136.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E417]
gi|425016707|ref|ZP_18427255.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
C621]
gi|425019763|ref|ZP_18430104.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
C497]
gi|425022821|ref|ZP_18432976.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
C1904]
gi|425031768|ref|ZP_18436877.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
515]
gi|425034107|ref|ZP_18439018.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
514]
gi|425038165|ref|ZP_18442792.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
513]
gi|425041928|ref|ZP_18446306.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
511]
gi|425044882|ref|ZP_18449010.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
510]
gi|425050155|ref|ZP_18453923.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
509]
gi|425052399|ref|ZP_18456010.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
506]
gi|425057678|ref|ZP_18461084.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
504]
gi|425061681|ref|ZP_18464890.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
503]
gi|427395341|ref|ZP_18888263.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus durans
FB129-CNAB-4]
gi|430821265|ref|ZP_19439877.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0045]
gi|430824136|ref|ZP_19442703.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0120]
gi|430826995|ref|ZP_19445163.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0164]
gi|430831685|ref|ZP_19449734.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0333]
gi|430839044|ref|ZP_19456986.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0688]
gi|430844708|ref|ZP_19462605.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1050]
gi|430848470|ref|ZP_19466287.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1133]
gi|430850973|ref|ZP_19468729.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1185]
gi|430853414|ref|ZP_19471142.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1258]
gi|430857147|ref|ZP_19474818.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1392]
gi|430859745|ref|ZP_19477354.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1552]
gi|430862497|ref|ZP_19479814.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1573]
gi|430867449|ref|ZP_19482443.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1574]
gi|430963107|ref|ZP_19487399.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1576]
gi|431011025|ref|ZP_19489769.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1578]
gi|431237018|ref|ZP_19503161.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1622]
gi|431263953|ref|ZP_19505841.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1623]
gi|431301233|ref|ZP_19507552.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1626]
gi|431382697|ref|ZP_19511290.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1627]
gi|431446091|ref|ZP_19513773.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1630]
gi|431523873|ref|ZP_19516898.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1634]
gi|431538190|ref|ZP_19517540.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1731]
gi|431678806|ref|ZP_19524468.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1904]
gi|431743308|ref|ZP_19532188.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2071]
gi|431745601|ref|ZP_19534445.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2134]
gi|431749160|ref|ZP_19537904.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2297]
gi|431754228|ref|ZP_19542892.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2883]
gi|431765875|ref|ZP_19554375.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E4215]
gi|431769129|ref|ZP_19557555.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1321]
gi|431770212|ref|ZP_19558615.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1644]
gi|431773831|ref|ZP_19562147.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2369]
gi|431777195|ref|ZP_19565450.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2560]
gi|431779447|ref|ZP_19567642.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E4389]
gi|431783347|ref|ZP_19571465.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E6012]
gi|431785133|ref|ZP_19573165.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E6045]
gi|447912698|ref|YP_007394110.1| RNA methyltransferase, TrmA family [Enterococcus faecium NRRL
B-2354]
gi|68194473|gb|EAN08972.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium DO]
gi|257814437|gb|EEV43195.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,230,933]
gi|257818668|gb|EEV45996.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,231,502]
gi|257827767|gb|EEV54393.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,231,410]
gi|257829975|gb|EEV56582.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,231,408]
gi|260073495|gb|EEW61823.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium C68]
gi|289162999|gb|EFD10847.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
D344SRF]
gi|291588013|gb|EFF19863.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1071]
gi|291592107|gb|EFF23727.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1636]
gi|291598959|gb|EFF30007.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
U0317]
gi|291604764|gb|EFF34248.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1162]
gi|313590637|gb|EFR69482.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0133a01]
gi|313591313|gb|EFR70158.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0133B]
gi|313594443|gb|EFR73288.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0133A]
gi|313597442|gb|EFR76287.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0133C]
gi|313640943|gb|EFS05523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0133a04]
gi|313643645|gb|EFS08225.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0082]
gi|364090675|gb|EHM33230.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E4452]
gi|364094045|gb|EHM36260.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E4453]
gi|378938355|gb|AFC63427.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecium
Aus0004]
gi|388533382|gb|AFK58574.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
faecium DO]
gi|402921561|gb|EJX42000.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R501]
gi|402921669|gb|EJX42103.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
V689]
gi|402926658|gb|EJX46685.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
S447]
gi|402932617|gb|EJX52110.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R499]
gi|402934132|gb|EJX53515.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R496]
gi|402937667|gb|EJX56765.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R494]
gi|402938046|gb|EJX57082.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R497]
gi|402944754|gb|EJX63148.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R446]
gi|402948745|gb|EJX66853.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1986]
gi|402951553|gb|EJX69466.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1190]
gi|402955702|gb|EJX73211.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1140]
gi|402956446|gb|EJX73908.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1137]
gi|402957939|gb|EJX75297.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1123]
gi|402960278|gb|EJX77434.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV99]
gi|402961990|gb|EJX78972.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1139]
gi|402970270|gb|EJX86626.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV69]
gi|402976412|gb|EJX92308.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV26]
gi|402977492|gb|EJX93305.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV38]
gi|402981440|gb|EJX96967.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV168]
gi|402987106|gb|EJY02198.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV165]
gi|402987891|gb|EJY02930.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV102]
gi|402988645|gb|EJY03635.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV161]
gi|402994753|gb|EJY09262.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV1]
gi|402998711|gb|EJY12955.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E417]
gi|403001270|gb|EJY15332.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E422]
gi|403006289|gb|EJY19946.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
C621]
gi|403010940|gb|EJY24281.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
C497]
gi|403011911|gb|EJY25190.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
C1904]
gi|403014878|gb|EJY27837.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
515]
gi|403020033|gb|EJY32596.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
513]
gi|403021246|gb|EJY33714.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
514]
gi|403024654|gb|EJY36799.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
509]
gi|403025186|gb|EJY37282.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
511]
gi|403028532|gb|EJY40352.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
510]
gi|403034635|gb|EJY46070.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
506]
gi|403039990|gb|EJY51097.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
504]
gi|403040707|gb|EJY51764.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
503]
gi|404453916|gb|EKA00948.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus sp. GMD4E]
gi|404457616|gb|EKA04146.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus sp. GMD3E]
gi|404463250|gb|EKA08946.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus sp. GMD2E]
gi|404468051|gb|EKA13085.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus sp. GMD1E]
gi|410734685|gb|EKQ76604.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus sp.
GMD5E]
gi|425723841|gb|EKU86727.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus durans
FB129-CNAB-4]
gi|430438702|gb|ELA49113.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0045]
gi|430441520|gb|ELA51617.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0120]
gi|430444541|gb|ELA54379.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0164]
gi|430481066|gb|ELA58231.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0333]
gi|430491041|gb|ELA67523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0688]
gi|430496139|gb|ELA72244.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1050]
gi|430534730|gb|ELA75165.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1185]
gi|430534913|gb|ELA75345.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1133]
gi|430540495|gb|ELA80697.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1258]
gi|430542872|gb|ELA82965.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1392]
gi|430543282|gb|ELA83357.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1552]
gi|430549075|gb|ELA88922.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1573]
gi|430550460|gb|ELA90256.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1574]
gi|430555532|gb|ELA95069.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1576]
gi|430560047|gb|ELA99353.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1578]
gi|430572582|gb|ELB11432.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1622]
gi|430576389|gb|ELB15040.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1623]
gi|430580423|gb|ELB18890.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1626]
gi|430581068|gb|ELB19515.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1627]
gi|430584831|gb|ELB23145.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1634]
gi|430585735|gb|ELB24007.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1630]
gi|430594732|gb|ELB32695.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1731]
gi|430599204|gb|ELB36919.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1904]
gi|430607142|gb|ELB44470.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2071]
gi|430610357|gb|ELB47509.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2134]
gi|430611922|gb|ELB48989.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2297]
gi|430619835|gb|ELB56647.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2883]
gi|430627465|gb|ELB63961.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E4215]
gi|430627904|gb|ELB64368.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1321]
gi|430635165|gb|ELB71263.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2369]
gi|430635965|gb|ELB72044.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1644]
gi|430639679|gb|ELB75545.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2560]
gi|430642302|gb|ELB78083.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E4389]
gi|430645548|gb|ELB81062.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E6012]
gi|430648203|gb|ELB83624.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E6045]
gi|445188407|gb|AGE30049.1| RNA methyltransferase, TrmA family [Enterococcus faecium NRRL
B-2354]
Length = 460
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 82/361 (22%), Positives = 155/361 (42%), Gaps = 56/361 (15%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRC 102
CP + C GC + + + +++ +A + FK G + T + +R
Sbjct: 76 CPVYYECGGCQLQHLAYQAQLDFKKDLLL-QALEKFKPAGFRSYQLLPTIGMDEPWHYRN 134
Query: 103 RAKLAVRGTSTSPLI--GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYD 160
+A+ +R + I GLY+ +H +V I C PR + + Q + + + YD
Sbjct: 135 KAQFQLRKNKQTQKIEAGLYEANSHQLVPITDCLVQEPRTQKVMNTVVQLLNKFDAPIYD 194
Query: 161 EDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLW 220
E +G R + + + + G++Q+ V+ +R++K P + +
Sbjct: 195 ERTNSGIFRTIMVRIGV-----------KTGELQV--VFITRSKKFPQKNA-------MI 234
Query: 221 RNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQA 280
R R E + S+ N Q +++ G+ HL G+ E + + L+P +F Q
Sbjct: 235 REINERLPE--VVSIMQNVQAQKTSLVMGDETIHLWGKEAIEEQINEVTFDLSPRAFFQL 292
Query: 281 NTRAFDILLRKLQKY--VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSF 338
N + ++L + K V ++ D Y G G IGLS+ A++ + V+ ++ ++
Sbjct: 293 NPQQTELLYGEGIKALDVQPNETIVDAYCGVGTIGLSV--AKQAKEVRGMDTVPQAIADA 350
Query: 339 EKTVSRLPKSVDGNISWHNADNSIEPL-----SWL---VGSDVLVVDPPRKGLDSSLVHA 390
+K RL +HN + WL D ++VDPPR GLD++L+ +
Sbjct: 351 KKNAERL--------GYHNTRYEVGTAEQVLPKWLNEGFQPDGIIVDPPRTGLDNALIQS 402
Query: 391 L 391
L
Sbjct: 403 L 403
>gi|304385359|ref|ZP_07367704.1| 23S rRNA (uracil-5-)-methyltransferase [Pediococcus acidilactici
DSM 20284]
gi|304328566|gb|EFL95787.1| 23S rRNA (uracil-5-)-methyltransferase [Pediococcus acidilactici
DSM 20284]
Length = 455
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 157/323 (48%), Gaps = 33/323 (10%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR G ++ G+H++V I P I+ + +R ++E +EP
Sbjct: 129 GYRNKAQVPVRKVKGQLATGFFKRGSHDLVPIEDFYIQDPVIDQVILKVRDILREYQIEP 188
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++ G +R ++ R+G++ + L+ ++ + L+ +A
Sbjct: 189 YDEINQRGVVR-----------NIMVRRGRRSGEIMVVLIT-----RTSSVSHLDEIAAA 232
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ + G + SV N NVI G R L GE+ + + G ++ SF
Sbjct: 233 IHQIDG-------VVSVIQNINPKQTNVIMGKEDRLLAGESVIHDELLGQKFIISAHSFY 285
Query: 279 QANTRAFDILLR-KLQKYVPYGA-SVTDLYAGAGVIGLSLA-AARKCRSVKCV-EINKES 334
Q N + L + ++K G +V D+Y+G G I L++A AA+K V+ V E +++
Sbjct: 286 QVNPVQTEKLYQLAIEKAGLTGKETVLDVYSGIGTISLAMAQAAKKVYGVEIVKEAVQDA 345
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSI 394
+++ + ++ K V G A E + DV+VVDPPRKGLD S+++A ++
Sbjct: 346 KVNAVQNQAKNVKFVVGKAEDQMAKWQAEGMQ----PDVVVVDPPRKGLDESVINA--TV 399
Query: 395 GSAERKAKSLSESSSSMVKEEKR 417
A ++ +S + +++V++ R
Sbjct: 400 AMAPKRVVYVSCNPATLVRDIDR 422
>gi|167767439|ref|ZP_02439492.1| hypothetical protein CLOSS21_01958 [Clostridium sp. SS2/1]
gi|167710731|gb|EDS21310.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. SS2/1]
gi|291558726|emb|CBL37526.1| 23S rRNA m(5)U-1939 methyltransferase [butyrate-producing bacterium
SSC/2]
Length = 457
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 85/307 (27%), Positives = 135/307 (43%), Gaps = 45/307 (14%)
Query: 98 YGWRCRAKLAVRGTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVEL-LRQGIKELN 155
+ +R +A+ V LI G Y TH+++D HC HP +N + L + +K+ N
Sbjct: 127 FYYRNKAQFPVGYDKEGNLITGFYAGRTHHIIDCTHCMIQHP-VNEQILLKVLDYMKKNN 185
Query: 156 VEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESL 215
+ YDE G +R++ V ++ G++ + LV N + N LE L
Sbjct: 186 ITAYDEKTHKGLVRHIVTRVG-----------FKTGEIMVCLVVNGSKKNLRN---LEML 231
Query: 216 AEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPS 275
+ L G + S+ N N I G++ + G+ ++ +G + + P
Sbjct: 232 IDSLTEVEG-------MTSICVNINKEKTNRILGSKIEEVYGKPYIYDYIGNVKYQIGPL 284
Query: 276 SFGQANTRAFDILLRKLQKYVPYGASVT--DLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
SF Q N +L K +Y T DLY G G I L L A+K + V VEI KE
Sbjct: 285 SFFQVNPTQTKVLYEKAMEYADLKGEETVWDLYCGIGTISLFL--AQKAKKVYGVEIVKE 342
Query: 334 SQLSFEKTVSRLPKSVDGNISWHNAD------NSIEPLSWL---VGSDVLVVDPPRKGLD 384
+ +RL ++G + NA+ + P + V +D +VVDPPRKG D
Sbjct: 343 AIDD-----ARLNAKMNG---FDNAEFFVGKAEEVLPREYEKNGVYADTIVVDPPRKGCD 394
Query: 385 SSLVHAL 391
S L+ +
Sbjct: 395 SKLLETM 401
>gi|423531620|ref|ZP_17508065.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuB1-1]
gi|402443657|gb|EJV75553.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuB1-1]
Length = 458
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 154/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ + K
Sbjct: 293 PEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEA-IEDAKR 351
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 352 NAALNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|448236625|ref|YP_007400683.1| 23S rRNA methyltransferase [Geobacillus sp. GHH01]
gi|445205467|gb|AGE20932.1| 23S rRNA methyltransferase [Geobacillus sp. GHH01]
Length = 457
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 91/356 (25%), Positives = 153/356 (42%), Gaps = 44/356 (12%)
Query: 54 CPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRCR 103
CP ++ C GC ++E L + + IG L+ + +R +
Sbjct: 78 CPVYRQCGGCQLQHLSYEGQLKAK--EKQVKEVLARIGKLEGVTVHPVIGMKNPWRYRNK 135
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A++ V + G Y+E TH ++D+ C + V+ +++ + + PYDE
Sbjct: 136 AQVPVGEREGGLVAGFYKERTHEIIDMDACLIQQEANDVVVQAVKRIAERYGIPPYDETT 195
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNG 223
G LR++ V Y S G+V + LV +R + P+ + + + +
Sbjct: 196 HKGVLRHI---VARYGAS--------TGEVMVVLV--TRTDHLPHEQDI--VRDIVRAIP 240
Query: 224 GSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTR 283
G + S+ N NVIFG + R L G + +GGI +++ SF Q N
Sbjct: 241 G-------VKSIVQNVNPERTNVIFGAKTRVLWGSEFITDRIGGIQFAISARSFYQVNPE 293
Query: 284 AFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y +V D Y G G I L L ARK + V VEI E+ + K
Sbjct: 294 QTKVLYDKALEYAELTGRETVIDAYCGIGTISLFL--ARKAKHVYGVEIVPEA-IEDAKR 350
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
++L + A++ I W + +D LVVDPPRKG D++L+ + ++
Sbjct: 351 NAKLNGIQNVTFEVGAAEDVIP--RWYQEGIRADCLVVDPPRKGCDAALLETIIAM 404
>gi|229131321|ref|ZP_04260222.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST196]
gi|228652142|gb|EEL08078.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST196]
Length = 465
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 154/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 85 ECPVYNECGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRN 142
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 143 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEE 202
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + + E +A
Sbjct: 203 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKEAIIEEIA----- 244
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 245 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 299
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 300 PEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 359
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 360 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 409
>gi|206974173|ref|ZP_03235090.1| RNA methyltransferase, TrmA family [Bacillus cereus H3081.97]
gi|217957891|ref|YP_002336435.1| TrmA family RNA methyltransferase [Bacillus cereus AH187]
gi|222094090|ref|YP_002528147.1| RNA methyltransferase protein, trma family (tRNA
(uracil-5-)-methyltransferase) [Bacillus cereus Q1]
gi|375282425|ref|YP_005102862.1| TrmA family RNA methyltransferase [Bacillus cereus NC7401]
gi|423356817|ref|ZP_17334419.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus IS075]
gi|423375721|ref|ZP_17353057.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
AND1407]
gi|423572063|ref|ZP_17548278.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
MSX-A12]
gi|423577826|ref|ZP_17553945.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
MSX-D12]
gi|206747413|gb|EDZ58803.1| RNA methyltransferase, TrmA family [Bacillus cereus H3081.97]
gi|217063544|gb|ACJ77794.1| RNA methyltransferase, TrmA family [Bacillus cereus AH187]
gi|221238145|gb|ACM10855.1| RNA methyltransferase protein, trmA family (tRNA
(uracil-5-)-methyltransferase) [Bacillus cereus Q1]
gi|358350950|dbj|BAL16122.1| RNA methyltransferase, TrmA family [Bacillus cereus NC7401]
gi|401076787|gb|EJP85137.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus IS075]
gi|401090965|gb|EJP99111.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
AND1407]
gi|401198878|gb|EJR05790.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
MSX-A12]
gi|401204084|gb|EJR10905.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
MSX-D12]
Length = 458
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 154/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ + K
Sbjct: 293 PEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEA-IEDAKR 351
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 352 NAALNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|219856479|ref|YP_002473601.1| hypothetical protein CKR_3136 [Clostridium kluyveri NBRC 12016]
gi|219570203|dbj|BAH08187.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 478
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 138/311 (44%), Gaps = 56/311 (18%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
Y +R + +L V + IG Y + +H ++++ C + V+L+RQ I++ N+E
Sbjct: 149 YRYRNKVQLPVGSSKNGINIGFYAKKSHEIINMTSCFIQSETSDKIVKLIRQWIEKYNIE 208
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
PY+E + G +R++ + E + ++ + +V + + E
Sbjct: 209 PYNEKNGKGIIRHIMI-----------REAFTTAEIMVVIVTAVSHLPYK-----KEFIE 252
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
+ RN I S+ N NVI G L G + +G S++P SF
Sbjct: 253 IITRN------VPVIKSIVQNINRDRTNVIMGKECIILWGRDTINDYIGKFKFSISPLSF 306
Query: 278 GQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q N ++L K+ +Y + + D Y G G I L L ++K + V VEI
Sbjct: 307 FQVNPVQTEVLYNKVLEYAGLTGNEVIFDAYCGTGTISLFL--SQKAKKVYGVEI----- 359
Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVG---------------SDVLVVDPPR 380
+P++++ N + + A+N I+ + ++ G +DV+VVDPPR
Sbjct: 360 ---------IPQAIE-NANMNAAENGIDNVEFITGKSEKVIPELIKKGVRADVVVVDPPR 409
Query: 381 KGLDSSLVHAL 391
KG + +L+H++
Sbjct: 410 KGCEEALLHSI 420
>gi|430836963|ref|ZP_19454939.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0680]
gi|430487744|gb|ELA64452.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0680]
Length = 460
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 82/361 (22%), Positives = 155/361 (42%), Gaps = 56/361 (15%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRC 102
CP + C GC + + + +++ +A + FK G + T + +R
Sbjct: 76 CPVYYECGGCQLQHLAYQAQLDFKKDLLL-QALEKFKPAGFRSYQLLPTIGMDEPWHYRN 134
Query: 103 RAKLAVRGTSTSPLI--GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYD 160
+A+ +R + I GLY+ +H +V I C PR + + Q + + + YD
Sbjct: 135 KAQFQLRKNKQTQKIEAGLYEANSHQLVPITDCLVQEPRTQKVMNTVVQLLNKFDAPIYD 194
Query: 161 EDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLW 220
E +G R + + + + G++Q+ V+ +R++K P + +
Sbjct: 195 ERTNSGIFRTIMVRIGV-----------KTGELQV--VFITRSKKFPQKNA-------MI 234
Query: 221 RNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQA 280
R R E + S+ N Q +++ G+ HL G+ E + + L+P +F Q
Sbjct: 235 REINERLPE--VVSIMQNVQAQKTSLVMGDETIHLWGKEAIEEQINEVTFDLSPRAFFQL 292
Query: 281 NTRAFDILLRKLQKY--VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSF 338
N + ++L + K V ++ D Y G G IGLS+ A++ + V+ ++ ++
Sbjct: 293 NPQQTELLYGEGIKALDVQPNETIVDAYCGVGTIGLSV--AKQAKEVRGMDTVPQAIADA 350
Query: 339 EKTVSRLPKSVDGNISWHNADNSIEPL-----SWL---VGSDVLVVDPPRKGLDSSLVHA 390
+K RL +HN + WL D ++VDPPR GLD++L+ +
Sbjct: 351 KKNAERL--------GYHNTRYEVGTAEQVLPKWLNEGFQPDGIIVDPPRTGLDNALIQS 402
Query: 391 L 391
L
Sbjct: 403 L 403
>gi|293553261|ref|ZP_06673898.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1039]
gi|425056506|ref|ZP_18459957.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
505]
gi|430829440|ref|ZP_19447533.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0269]
gi|430833654|ref|ZP_19451665.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0679]
gi|430840792|ref|ZP_19458715.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1007]
gi|430869769|ref|ZP_19482969.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1575]
gi|431067562|ref|ZP_19493981.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1604]
gi|431099457|ref|ZP_19496623.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1613]
gi|431760651|ref|ZP_19549248.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E3346]
gi|291602671|gb|EFF32886.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1039]
gi|403031536|gb|EJY43136.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
505]
gi|430480879|gb|ELA58050.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0269]
gi|430486059|gb|ELA62927.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0679]
gi|430494998|gb|ELA71216.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1007]
gi|430559458|gb|ELA98808.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1575]
gi|430567987|gb|ELB07045.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1604]
gi|430570958|gb|ELB09897.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1613]
gi|430623736|gb|ELB60414.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E3346]
Length = 460
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 82/361 (22%), Positives = 155/361 (42%), Gaps = 56/361 (15%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRC 102
CP + C GC + + + +++ +A + FK G + T + +R
Sbjct: 76 CPVYYECGGCQLQHLAYQAQLDFKKDLLL-QALEKFKPAGFRSYQLLPTIGMDEPWHYRN 134
Query: 103 RAKLAVRGTSTSPLI--GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYD 160
+A+ +R + I GLY+ +H +V I C PR + + Q + + + YD
Sbjct: 135 KAQFQLRKNKQTQKIEAGLYEANSHQLVPITDCLVQEPRTQKVMNTVVQLLNKFDAPIYD 194
Query: 161 EDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLW 220
E +G R + + + + G++Q+ V+ +R++K P + +
Sbjct: 195 ERTNSGIFRTIMVRIGV-----------KTGELQV--VFITRSKKFPQKNA-------MI 234
Query: 221 RNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQA 280
R R E + S+ N Q +++ G+ HL G+ E + + L+P +F Q
Sbjct: 235 REINERLPE--VVSIMQNVQAQKTSLVMGDETIHLWGKEAIEEQINEVTFDLSPRAFFQL 292
Query: 281 NTRAFDILLRKLQKY--VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSF 338
N + ++L + K V ++ D Y G G IGLS+ A++ + V+ ++ ++
Sbjct: 293 NPQQTELLYGEGIKALDVQPNETIVDAYCGVGTIGLSV--AKQAKEVRGMDTVPQAIADA 350
Query: 339 EKTVSRLPKSVDGNISWHNADNSIEPL-----SWL---VGSDVLVVDPPRKGLDSSLVHA 390
+K RL +HN + WL D ++VDPPR GLD++L+ +
Sbjct: 351 KKNAERL--------GYHNTRYEVGTAEQVLPKWLNEGFQPDGIIVDPPRTGLDNALIQS 402
Query: 391 L 391
L
Sbjct: 403 L 403
>gi|308172666|ref|YP_003919371.1| RNA methyltransferase [Bacillus amyloliquefaciens DSM 7]
gi|384158339|ref|YP_005540412.1| RNA methyltransferase [Bacillus amyloliquefaciens TA208]
gi|384163221|ref|YP_005544600.1| RNA methyltransferase [Bacillus amyloliquefaciens LL3]
gi|384167389|ref|YP_005548767.1| RNA methyltransferase [Bacillus amyloliquefaciens XH7]
gi|307605530|emb|CBI41901.1| putative RNA methyltransferase [Bacillus amyloliquefaciens DSM 7]
gi|328552427|gb|AEB22919.1| RNA methyltransferase [Bacillus amyloliquefaciens TA208]
gi|328910776|gb|AEB62372.1| putative RNA methyltransferase [Bacillus amyloliquefaciens LL3]
gi|341826668|gb|AEK87919.1| putative RNA methyltransferase [Bacillus amyloliquefaciens XH7]
Length = 466
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 85/369 (23%), Positives = 154/369 (41%), Gaps = 67/369 (18%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIV---DEATDFFKSIGLLDFTFDSCRLYGWRCR 103
CP + C GC + + R I++ + T F + T + +R +
Sbjct: 82 CPVYDQCGGCQLQHLAYSQQLREKRDIVIQSLERHTRFNVEEMNIKETIGMDNPWNYRNK 141
Query: 104 AKLAV-RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
++ V R S S + GLY +H +V I C HP N ++R+ +++ NV Y+E
Sbjct: 142 SQFQVGRSQSGSIIAGLYGLDSHKIVPIKECIVQHPATNKTTGIVRRILEKHNVSVYNER 201
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
+ GD+R + V + G+VQ+ LV + E PN D++ +
Sbjct: 202 TKKGDVRTIVTRVG-----------FETGEVQVVLV--TAKETLPNKDEIVKAIQ----- 243
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+R + S+ N + +VIFG++ + L G E +G + L+ +F Q N
Sbjct: 244 ----NRLPEVKSIIQNINGARTSVIFGDKTKALAGSHAIQEVLGDVSFELSARAFFQLNP 299
Query: 283 RAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
L +++K V D Y G G IG+ +++ K ++ +++ KES +K
Sbjct: 300 EQTVKLYDEVKKAAQLTGKEKVVDAYCGVGTIGMWVSSGAK--EIRGMDVIKESIDDAKK 357
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPPRKGLDS 385
N H N+ +++ G+ DV++VDPPR G D
Sbjct: 358 -----------NAKKHGIKNA----AYVTGTAEHWLPKWTKEGFRPDVVIVDPPRTGCDG 402
Query: 386 SLVHALQSI 394
+ + ++ +
Sbjct: 403 TFLDTIKKV 411
>gi|194016025|ref|ZP_03054640.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus pumilus ATCC
7061]
gi|194012380|gb|EDW21947.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus pumilus ATCC
7061]
Length = 460
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 82/353 (23%), Positives = 147/353 (41%), Gaps = 42/353 (11%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDFT-------FDSCRLYGWRCR 103
CP ++ C GC + + ++ + D + IG LD + + +R +
Sbjct: 78 CPIYKQCGGCQIQHMSYEGQLLFKQKQVKDVLERIGKLDMSRVKVHPVLGMEDPWNYRNK 137
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A++ + + G YQ+ TH ++D+ C + V+ ++ ++ Y+E+
Sbjct: 138 AQVPIGEREGGLVAGFYQQRTHEIIDMEKCLIQQSENDEVVQAVKDICNAFGIKAYNEER 197
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNG 223
G LR+V + RY ++ +V+ +R P K + + + +
Sbjct: 198 HKGWLRHVMV-------------RYGIATGEMMVVFVTRTADFPQ--KQQVIEQII---- 238
Query: 224 GSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTR 283
+R ++ S+ N + NVIFG+ L GE ++ +G I +++ SF Q N
Sbjct: 239 ---ARFPHVRSIVQNVNSKKTNVIFGDETTVLWGEEYIYDTIGDIKFAISARSFYQVNPA 295
Query: 284 AFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y V D Y G G I L L A+K V VEI E + E
Sbjct: 296 QTKVLYDKALEYAELQGEEIVIDAYCGIGTISLFL--AQKAGRVYGVEIVPE---AIEDA 350
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ N+ + + +W + +D LVVDPPRKG D +L+ +
Sbjct: 351 KRNAALNEINNVEFAVGEAETVIPNWYKEGIKADTLVVDPPRKGCDEALLDTI 403
>gi|229137158|ref|ZP_04265777.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST26]
gi|228646330|gb|EEL02545.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST26]
Length = 459
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 154/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ + K
Sbjct: 293 PEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEA-IEDAKR 351
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 352 NAALNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|375307085|ref|ZP_09772375.1| RNA methyltransferase, TrmA family protein, partial [Paenibacillus
sp. Aloe-11]
gi|375080803|gb|EHS59021.1| RNA methyltransferase, TrmA family protein, partial [Paenibacillus
sp. Aloe-11]
Length = 373
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 135/300 (45%), Gaps = 36/300 (12%)
Query: 100 WRCRAKLAV-RGTSTSPLIG-LYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
WR R K V G + L+G Y G+H +VD+ C R + V +++ + L +
Sbjct: 42 WRYRNKAQVPIGVTEGGLVGGFYARGSHRIVDMDTCLIQDERNDEVVARVKEIGRMLGIS 101
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
Y+E+ G LR+V + +R G++ + LV N R+ P++D
Sbjct: 102 AYNEETGRGLLRHVVVKTA-----------FRTGEMMLVLVTNGRD--IPHADA------ 142
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
W G R ++ S+ N T NVIFG+ R L G ++ +G + +++ SF
Sbjct: 143 --W-IGSIREHVPHVASICQNVNTKRTNVIFGDETRVLWGRDVIYDYIGNVQFAISARSF 199
Query: 278 GQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q N ++L K +Y +V D Y G G I L L A+ V VEI KE
Sbjct: 200 YQVNPVQTEVLYSKTVEYAGLTGKETVIDAYCGIGTISLFL--AQHADQVYGVEIVKE-- 255
Query: 336 LSFEKTVSRLPKSVDGNISWH-NADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ E S + N+ + A + P +W + +DV+VVDPPRKG D L+ +
Sbjct: 256 -AIEDARSNALLNNMRNVKFEVGASEDVIP-AWKEQGITADVIVVDPPRKGCDPRLLDTI 313
>gi|406586545|ref|ZP_11061474.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
GMD1S]
gi|404474003|gb|EKA18325.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
GMD1S]
Length = 453
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 139/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ + LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFFIQDPVIDQVIVALRDLLRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P ++E L E L
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVILVTTR-----PKVFRVEQLIEHL 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG W+ L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWKTLYGQDYIIDQMLGNDYQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + A V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAGLKADDVVIDAYSGIGTIGLSV--AKHVKEVYGVEVIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K + L + + A+N++ +WL + V++VDPPRKGL S + A
Sbjct: 342 SQKNAA-LNNITNAHYVCDTAENAMR--NWLKEGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|289435088|ref|YP_003464960.1| RNA methyltransferase [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289171332|emb|CBH27874.1| RNA methyltransferase [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 453
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 155/353 (43%), Gaps = 40/353 (11%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKL 106
C + C GC+ + + ++ + K IG L+ T + +R ++++
Sbjct: 76 CAVYSKCGGCSLQHLSYVGQLAFKRNQVEETMKRIGKLNVEVKETLGMENPWRYRNKSQV 135
Query: 107 AVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTG 166
V + G YQ+ +H ++D+ C + + AV+ R+ + + EPYDE G
Sbjct: 136 PVGFVNGKLTAGFYQKRSHEIIDMSTCLIQSEQGDFAVQKTREVLAKYGTEPYDEKTGKG 195
Query: 167 DLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRNGGS 225
D+R++ R+ + Q+ LV + ++ P +++ L E L
Sbjct: 196 DIRHIMT-------------RFAHTTGQLMLVLVTTKDRLPFKEEIIRDLTEQLA----- 237
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
+ S+ N NVIFG+R + L G+ + + GI +++ SF Q N
Sbjct: 238 ------LTSIVQNINPQKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPLQT 291
Query: 286 DILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
++L ++ + +V D Y G G I L L A+K + V VEI ++ + +T +
Sbjct: 292 EVLYQQAIEAAELTGEETVIDAYCGIGSISLCL--AKKAKHVYGVEIVDQA-IQDARTNA 348
Query: 344 RLPKSVDGNISWHNADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHALQSI 394
L + A+ I P + G +DVLVVDPPRKG D L+ + ++
Sbjct: 349 ELNNLSNTTFETGKAEEVI-PTWYKAGIVADVLVVDPPRKGCDEKLLQTILAM 400
>gi|146318257|ref|YP_001197969.1| SAM-dependent methyltransferase related to tRNA
(uracil-5-)-methyltransferase [Streptococcus suis
05ZYH33]
gi|146320451|ref|YP_001200162.1| SAM-dependent methyltransferase related to tRNA
(uracil-5-)-methyltransferase [Streptococcus suis
98HAH33]
gi|253751426|ref|YP_003024567.1| RNA methyltransferase [Streptococcus suis SC84]
gi|253753327|ref|YP_003026468.1| RNA methyltransferase [Streptococcus suis P1/7]
gi|253755843|ref|YP_003028983.1| RNA methyltransferase [Streptococcus suis BM407]
gi|386577592|ref|YP_006073998.1| tRNA (uracil-5-)-methyltransferase/TrmA [Streptococcus suis GZ1]
gi|386581597|ref|YP_006078001.1| SAM-dependent methyltransferase-related tRNA
(uracil-5-)-methyltransferase [Streptococcus suis SS12]
gi|386587830|ref|YP_006084231.1| SAM-dependent methyltransferase [Streptococcus suis A7]
gi|403061231|ref|YP_006649447.1| SAM-dependent methyltransferase [Streptococcus suis S735]
gi|145689063|gb|ABP89569.1| SAM-dependent methyltransferase related to tRNA
(uracil-5-)-methyltransferase [Streptococcus suis
05ZYH33]
gi|145691257|gb|ABP91762.1| SAM-dependent methyltransferase related to tRNA
(uracil-5-)-methyltransferase [Streptococcus suis
98HAH33]
gi|251815715|emb|CAZ51315.1| putative RNA methyltransferase [Streptococcus suis SC84]
gi|251818307|emb|CAZ56118.1| putative RNA methyltransferase [Streptococcus suis BM407]
gi|251819573|emb|CAR45243.1| putative RNA methyltransferase [Streptococcus suis P1/7]
gi|292558055|gb|ADE31056.1| tRNA (uracil-5-)-methyltransferase/TrmA [Streptococcus suis GZ1]
gi|353733743|gb|AER14753.1| SAM-dependent methyltransferase-related tRNA
(uracil-5-)-methyltransferase [Streptococcus suis SS12]
gi|354984991|gb|AER43889.1| SAM-dependent methyltransferase related to tRNA
(uracil-5-)-methyltransferase [Streptococcus suis A7]
gi|402808557|gb|AFR00049.1| SAM-dependent methyltransferase [Streptococcus suis S735]
Length = 452
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 146/303 (48%), Gaps = 36/303 (11%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A + VR + G +++ +H++V I H I+A V R +++L+++P
Sbjct: 125 AYRNKAAVPVRRVNGQLETGFFRKNSHDLVPIEDFYIQHKEIDALVLATRDLLRKLDLKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R + + Y +G++ + LV P ++E+L E
Sbjct: 185 YDEKEQTGLVRNIVVRRGHY-----------SGQLMLVLVTT-----RPKIFRVETLIER 228
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
L S+ + S+ N N IFG +R L G + + G + ++ SF
Sbjct: 229 LT------SQFPNLVSIVQNINDQNTNAIFGQEFRLLHGSETIADTMLGNEFEISAPSFY 282
Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q NT + L + + A V D Y+G G IGLS A++ + V VE+ +++ L
Sbjct: 283 QVNTEMAEKLYQTAIDFAELSADDVVIDAYSGIGTIGLSF--AKQVKHVYGVEVVEKAVL 340
Query: 337 SFEKTVSRLPKSVDGNISW--HNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+K +R +D N+++ +A+++++ W+ V V+ VDPPRKGL S + A
Sbjct: 341 DSQKNAAR--NGID-NVTYVCDSAESAMQ--KWVADGVKPTVIFVDPPRKGLTESFIKAS 395
Query: 392 QSI 394
S+
Sbjct: 396 TSV 398
>gi|148544651|ref|YP_001272021.1| RNA methyltransferase [Lactobacillus reuteri DSM 20016]
gi|184154004|ref|YP_001842345.1| RNA methyltransferase [Lactobacillus reuteri JCM 1112]
gi|148531685|gb|ABQ83684.1| RNA methyltransferase, TrmA family [Lactobacillus reuteri DSM
20016]
gi|183225348|dbj|BAG25865.1| RNA methyltransferase [Lactobacillus reuteri JCM 1112]
Length = 459
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 86/341 (25%), Positives = 151/341 (44%), Gaps = 66/341 (19%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
Y +R +A++ V+ G Y+ G+HN+V I P I+ A+ ++R +++ ++
Sbjct: 128 YHYRNKAQVPVKMVHGQLETGFYKRGSHNLVPIEDFYIQDPEIDKAIVVVRDLLRQYHIT 187
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRN---EKSPNSDKLES 214
PYDE G +R V + Y + ++ + LV N++ EK +
Sbjct: 188 PYDEQTGKGVIRTVMV-----------RRGYYSHEMMVVLVTNTKRLPMEKQIVDGIVAG 236
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
+ E + S+ N N + GN+ + L G + + + GID +++P
Sbjct: 237 VPE--------------VKSIVQNINDKRTNRLLGNKNKTLWGADEIHDQLLGIDFAISP 282
Query: 275 SSFGQANTRAFDILLRKL--QKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
SF Q N + + L + + +V D Y G G I SLA A+ + V VEI
Sbjct: 283 LSFYQVNPQQTERLYQTAIDNAGLDGNQTVIDAYCGIGTI--SLAVAKHAKQVYGVEI-- 338
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNAD-NSIEPLSWLVGS---------------DVLVV 376
+P +++ + HNA N I+ ++VG DV++V
Sbjct: 339 ------------VPAAIED--AKHNAKRNGIKNAKFVVGKAEEQFAKWQAEGLKPDVVIV 384
Query: 377 DPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKR 417
DPPRKGL SL+ A +G +K +S + +++V++ KR
Sbjct: 385 DPPRKGLAESLIEATGKMGP--KKVIYVSCNPATLVRDIKR 423
>gi|452854779|ref|YP_007496462.1| putative RNA methyltransferase [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
gi|452079039|emb|CCP20792.1| putative RNA methyltransferase [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
Length = 466
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 87/372 (23%), Positives = 159/372 (42%), Gaps = 73/372 (19%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIV---DEATDF-FKSIGLLDFTFDSCRLYGWRC 102
CP + C GC T + R I++ + T F + + + D T + +R
Sbjct: 82 CPVYDQCGGCQLQHLAYTQQLREKRDIVIQSLERHTRFNVEEMNIKD-TIGMDNPWNYRN 140
Query: 103 RAKLAV-RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDE 161
+++ V R S S + GLY +H +V I C HP N ++R+ +++ NV Y+E
Sbjct: 141 KSQFQVGRSQSGSIIAGLYGLDSHKIVPIKECIVQHPATNKTTGIVRRILEKHNVSVYNE 200
Query: 162 DDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
+ GD+R + V + G+VQ+ LV + E PN D++ +
Sbjct: 201 RTKKGDVRTIVTRVG-----------FETGEVQVVLV--TAKETLPNKDEIVKAIQ---- 243
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
+R + S+ N + +VIFG++ + L G E +G + L+ +F Q N
Sbjct: 244 -----NRLPEVKSIIQNVNGARTSVIFGDKTKALAGSHAIQEVLGDVSFELSARAFFQLN 298
Query: 282 ----TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
+ +D + + Q + V D Y G G IG+ +++ K ++ +++ KES
Sbjct: 299 PEQTVKLYDEVKQAAQ--LTGKEKVVDAYCGVGTIGMWVSSGAK--EIRGMDVIKESIDD 354
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPPRKG 382
+K N H N+ +++ G+ DV++VDPPR G
Sbjct: 355 AKK-----------NAKKHGIKNA----AYVTGTAEHWLPKWTKEGFRPDVVIVDPPRTG 399
Query: 383 LDSSLVHALQSI 394
D + + ++ +
Sbjct: 400 CDRTFLDTIKKV 411
>gi|386579528|ref|YP_006075933.1| hypothetical protein SSUJS14_0565 [Streptococcus suis JS14]
gi|319757720|gb|ADV69662.1| hypothetical protein SSUJS14_0565 [Streptococcus suis JS14]
Length = 453
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 146/303 (48%), Gaps = 36/303 (11%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A + VR + G +++ +H++V I H I+A V R +++L+++P
Sbjct: 125 AYRNKAAVPVRRVNGQLETGFFRKNSHDLVPIEDFYIQHKEIDALVLATRDLLRKLDLKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R + + Y +G++ + LV P ++E+L E
Sbjct: 185 YDEKEQTGLVRNIVVRRGHY-----------SGQLMLVLVTT-----RPKIFRVETLIER 228
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
L S+ + S+ N N IFG +R L G + + G + ++ SF
Sbjct: 229 LT------SQFPNLVSIVQNINDQNTNAIFGQEFRLLHGSETIADTMLGNEFEISAPSFY 282
Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q NT + L + + A V D Y+G G IGLS A++ + V VE+ +++ L
Sbjct: 283 QVNTEMAEKLYQTAIDFAELSADDVVIDAYSGIGTIGLSF--AKQVKHVYGVEVVEKAVL 340
Query: 337 SFEKTVSRLPKSVDGNISW--HNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+K +R +D N+++ +A+++++ W+ V V+ VDPPRKGL S + A
Sbjct: 341 DSQKNAAR--NGID-NVTYVCDSAESAMQ--KWVADGVKPTVIFVDPPRKGLTESFIKAS 395
Query: 392 QSI 394
S+
Sbjct: 396 TSV 398
>gi|138893974|ref|YP_001124427.1| RNA methyltransferase-like protein [Geobacillus thermodenitrificans
NG80-2]
gi|196250476|ref|ZP_03149167.1| RNA methyltransferase, TrmA family [Geobacillus sp. G11MC16]
gi|134265487|gb|ABO65682.1| RNA methyltransferase-like protein [Geobacillus thermodenitrificans
NG80-2]
gi|196209966|gb|EDY04734.1| RNA methyltransferase, TrmA family [Geobacillus sp. G11MC16]
Length = 460
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 89/356 (25%), Positives = 154/356 (43%), Gaps = 44/356 (12%)
Query: 54 CPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRCR 103
CP ++ C GC ++E L + + IG L+ + +R +
Sbjct: 78 CPVYRQCGGCQLQHLSYEGQLKAK--EKQVKEVLARIGKLEHVTVHPVIGMKNPWRYRNK 135
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A++ V + G Y+E +H ++D+ C + + V+ +++ + V PYDE
Sbjct: 136 AQVPVGEREGGLIAGFYKERSHEIIDMDACFIQQEKNDVVVQAVKRIAERYGVRPYDELT 195
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNG 223
G LR++ V Y + G+V + LV +R E+ P+ + + + R+
Sbjct: 196 HRGVLRHI---VARYGAA--------TGEVMVVLV--TRTERLPHE---QEIVRDIIRDI 239
Query: 224 GSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTR 283
+ S+ N NVIFG + R L G + +G I +++ SF Q N
Sbjct: 240 PD------VKSIVQNINPERTNVIFGAKTRVLWGSEFITDRIGDIQFAISARSFYQVNPE 293
Query: 284 AFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y +V D Y G G I L L A+K + V VEI E+ + K
Sbjct: 294 QTKVLYDKALEYAELTGTETVIDAYCGIGTISLFL--AKKAKHVYGVEIVPEA-IEDAKR 350
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+ L + + A++ I W + +D LVVDPPRKG D++L+ + ++
Sbjct: 351 NAALNGITNVTFAVGAAEDVIP--RWYEEGIRADCLVVDPPRKGCDAALLETIMAM 404
>gi|299820611|ref|ZP_07052501.1| 23S rRNA (uracil-5-)-methyltransferase [Listeria grayi DSM 20601]
gi|299818106|gb|EFI85340.1| 23S rRNA (uracil-5-)-methyltransferase [Listeria grayi DSM 20601]
Length = 460
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 87/350 (24%), Positives = 159/350 (45%), Gaps = 39/350 (11%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKL 106
C + C GC+ + ++ ++ K IG LD T + +R ++++
Sbjct: 82 CEVYAKCGGCSLQHLSYDGQLAFKQNQGAQNMKRIGKLDVEVKPTLGMEMPFRYRNKSQV 141
Query: 107 AVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTG 166
V + G YQ+ +H+++D+ C H+ + AV+++R+ +++ + PY E+ G
Sbjct: 142 PVGYVNGKIQAGFYQKRSHDIIDMDTCLIHNRTGDDAVQIVRRLLEKYAIMPYQEETGRG 201
Query: 167 DLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSR 226
D+R++ +T Y + +G++ I LV + +K PN +L + + N
Sbjct: 202 DIRHI---MTRYGKT--------SGELMIVLV--TTRKKFPNLTELVADIQKEVPN---- 244
Query: 227 SREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFD 286
I S+ N + NVI G R L G+ + + GI +++ SF Q N +
Sbjct: 245 -----IASIVQNINAAKTNVIMGETTRTLWGKEMITDTIHGIHFAISAKSFYQVNPEQTE 299
Query: 287 ILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR 344
+L ++ V D Y G G I L L A+ + V VEI ++ + K ++
Sbjct: 300 VLYQEALDAAGLTGDEIVIDAYCGIGSISLCL--AKNAKHVYGVEIVPQAIID-AKANAQ 356
Query: 345 LPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
L +D N+++ +W + +DVLVVDPPRKG D L+ +
Sbjct: 357 L-NQLD-NVTFETGKAEEVIPNWYRSGIKADVLVVDPPRKGCDEKLLETI 404
>gi|229083613|ref|ZP_04215941.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-44]
gi|228699703|gb|EEL52360.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-44]
Length = 465
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 157/353 (44%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIG-LLDF----TFDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L D + +R
Sbjct: 85 ECPVYNQCGGCQVQHLTYEGQLKAK--EKQVRDVMQRIGGLQDVPVHPVLGMENPWVYRN 142
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 143 KAQVPIGEREGGLVAGFYRQGTHDIINMETCLIQAEENDTLIQEVKRICEKHGIAAYNEE 202
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + + E +A
Sbjct: 203 RHKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKEAIIEEIA----- 244
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG+ L G ++ +G I +++ SF Q N
Sbjct: 245 -----TKFPEVKSIVQNVNTKRTNVIFGDTTTVLYGSEYIYDFIGDIKFAISARSFYQVN 299
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ + K
Sbjct: 300 PEQTKVLYDKALEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEA-IEDAKR 358
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + + A+ I +W + +D +VVDPPRKG D +L++ +
Sbjct: 359 NAELNNMTNAEFAVGEAEVVIP--NWYKEGIIADTIVVDPPRKGCDEALLNTI 409
>gi|407979240|ref|ZP_11160059.1| tRNA (uracil-5-)-methyltransferase [Bacillus sp. HYC-10]
gi|407414168|gb|EKF35829.1| tRNA (uracil-5-)-methyltransferase [Bacillus sp. HYC-10]
Length = 478
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 87/376 (23%), Positives = 154/376 (40%), Gaps = 81/376 (21%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVD----------EATDFFKSIGLLDFTFDSCR 96
CP ++ C GC + R I++ E D +IG+ D
Sbjct: 95 CPVYEECGGCQLQHLAYEQQLKEKRDIVIQSMERHTKLSVEKIDIRPTIGMED------- 147
Query: 97 LYGWRCRAKLAV-RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELN 155
+ +R +++ V R S + GLY +H +V I C HP+ N ++R+ +++
Sbjct: 148 PWHYRNKSQFQVGRSHSGDIIAGLYGLNSHKLVPIKECIVQHPKTNKTTGVVRKILEKFG 207
Query: 156 VEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESL 215
V Y+E R GD+R + + V + G+VQ+ LV + P K + +
Sbjct: 208 VSVYNERTRKGDVRSIVVRVG-----------FETGEVQVVLVTS-----KPEFPKKKEI 251
Query: 216 AEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPS 275
AE + + R + S+ N +VIFG++ HL G E +G + L+
Sbjct: 252 AEAIQK------RLPEVTSIMHNINGEKTSVIFGHKTSHLAGNMVIQEFLGDVSFELSAR 305
Query: 276 SFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
+F Q N + L + +K + D Y G G IG+ L+ + V+ +++ KE
Sbjct: 306 AFFQLNPKQTLKLYDETKKAAKLTGKEKLVDAYCGVGTIGMWLSDG--AKEVRGMDVIKE 363
Query: 334 SQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDP 378
S +K N H N+ +++ G+ DV+VVDP
Sbjct: 364 SIDDAKK-----------NAKKHGMKNA----TYVTGTAEHWLPKWVKEGFRPDVIVVDP 408
Query: 379 PRKGLDSSLVHALQSI 394
PR G + + + ++ +
Sbjct: 409 PRTGCERTFLDTVKQV 424
>gi|116873184|ref|YP_849965.1| RNA methyltransferase [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116742062|emb|CAK21186.1| RNA methyltransferase, TrmA family [Listeria welshimeri serovar 6b
str. SLCC5334]
Length = 453
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 81/352 (23%), Positives = 156/352 (44%), Gaps = 38/352 (10%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKL 106
C + C GC+ + ++ ++ + K IG L+ T + +R ++++
Sbjct: 76 CDVYSKCGGCSLQHLSYDGQLAFKRNQVEETMKRIGKLEVEVPKTLGMENPWRYRNKSQV 135
Query: 107 AVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTG 166
V + G YQ+ +H+++D+ C H+ + + AV+ R+ + + EPY+E G
Sbjct: 136 PVGFVNGKLTAGFYQKRSHDIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYNEKTGKG 195
Query: 167 DLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDK-LESLAEFLWRNGGS 225
D+R++ R+ + Q+ +V + ++ P ++ + L E L
Sbjct: 196 DIRHIMT-------------RFAHTTGQLMIVLVTNKDRIPFKEEIIRDLTEQLE----- 237
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
+ S+ N + NVIFG R + L G+ + + GI +++ SF Q N
Sbjct: 238 ------LTSIVQNINSHKTNVIFGERTKTLWGKDIIEDTIHGIRFAISARSFYQVNPLQT 291
Query: 286 DILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRL 345
+IL + T + A G+ +SL A+K + V VEI ++ + + + L
Sbjct: 292 EILYAQALDAAELTGEETVIDAYCGIGSISLCLAKKAKHVYGVEIVDQA-IQDARANAAL 350
Query: 346 PKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+ + A+ I +W + +DVLVVDPPRKG D L+ + ++
Sbjct: 351 NELTNTTFETGKAEEVIP--NWYKNGITADVLVVDPPRKGCDEKLLETILAM 400
>gi|385263921|ref|ZP_10042008.1| YfjO [Bacillus sp. 5B6]
gi|385148417|gb|EIF12354.1| YfjO [Bacillus sp. 5B6]
Length = 466
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 87/372 (23%), Positives = 159/372 (42%), Gaps = 73/372 (19%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIV---DEATDF-FKSIGLLDFTFDSCRLYGWRC 102
CP + C GC T + R I++ + T F + + + D T + +R
Sbjct: 82 CPVYDQCGGCQLQHLAYTQQLREKRDIVIQSLERHTRFNVEEMNIKD-TIGMDNPWNYRN 140
Query: 103 RAKLAV-RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDE 161
+++ V R S S + GLY +H +V I C HP N ++R+ +++ NV Y+E
Sbjct: 141 KSQFQVGRSQSGSIITGLYGLDSHKIVPIKECIVQHPATNKTTGIVRRILEKHNVSVYNE 200
Query: 162 DDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
+ GD+R + V + G+VQ+ LV + E PN D++ +
Sbjct: 201 RTKKGDVRTIVTRVG-----------FETGEVQVVLV--TAKETLPNKDEIVKAIQ---- 243
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
+R + S+ N + +VIFG++ + L G E +G + L+ +F Q N
Sbjct: 244 -----NRLPEVKSIIQNVNGARTSVIFGDKTKALAGSHAIQEVLGDVSFELSARAFFQLN 298
Query: 282 ----TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
+ +D + + Q + V D Y G G IG+ +++ K ++ +++ KES
Sbjct: 299 PEQTVKLYDEVKQAAQ--LTGKEKVVDAYCGVGTIGMWVSSGAK--EIRGMDVIKESIDD 354
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPPRKG 382
+K N H N+ +++ G+ DV++VDPPR G
Sbjct: 355 AKK-----------NAKKHGIKNA----AYVTGTAEHWLPEWTKEGFRPDVVIVDPPRTG 399
Query: 383 LDSSLVHALQSI 394
D + + ++ +
Sbjct: 400 CDRTFLDTIKKV 411
>gi|337281824|ref|YP_004621295.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis
ATCC 15912]
gi|335369417|gb|AEH55367.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis
ATCC 15912]
Length = 452
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 139/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + + G +++ +H+++ I P I+ V LR I+ +++PY
Sbjct: 126 YRNKAQVPVRRVNGQVVTGFFRKNSHDLMPIEDFYIQDPVIDQVVLALRDLIRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E L
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHHSGEIMVILVTTR-----PKVFRVDQLIEQL 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ + I SV N N IFG WR L G+ + + G ++ +F Q
Sbjct: 230 IKQFPA------IKSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNAFQISGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKEEDVVIDAYSGIGTIGLSV--AKHVKEVYGVEVIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K S L + + A+N+++ +WL + ++VDPPRKGL S + A
Sbjct: 342 SQKNAS-LNGITNAHYVCDTAENAMK--NWLKEGIQPTAILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|384184398|ref|YP_005570294.1| tRNA (Uracil-5-) -methyltransferase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|410672686|ref|YP_006925057.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus thuringiensis
Bt407]
gi|326938107|gb|AEA14003.1| tRNA (Uracil-5-) -methyltransferase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|409171815|gb|AFV16120.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus thuringiensis
Bt407]
Length = 458
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 154/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIG-LLDF----TFDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L D + +R
Sbjct: 78 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLADVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 293 PEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 352
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 353 -AELNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|229194707|ref|ZP_04321500.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1293]
gi|423607854|ref|ZP_17583747.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD102]
gi|228588810|gb|EEK46835.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1293]
gi|401239824|gb|EJR46235.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD102]
Length = 458
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 154/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMKTPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ + K
Sbjct: 293 PEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEA-IEDAKR 351
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 352 NAALNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|260161759|emb|CAZ39303.1| hypothetical protein [Streptococcus suis]
gi|313575341|emb|CBR26870.1| SAM-dependent methyltransferase related to tRNA
(uracil-5-)-methyltransferase [Streptococcus phage
phi-SsUD.1]
Length = 451
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 146/303 (48%), Gaps = 36/303 (11%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A + VR + G +++ +H++V I H I+A V R +++L+++P
Sbjct: 125 AYRNKAAVPVRRVNGQLETGFFRKNSHDLVPIEDFYIQHKEIDALVLATRDLLRKLDLKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R ++ + +G++ + LV P ++E+L E
Sbjct: 185 YDEKEQTGLVR-----------NIVVRRGHYSGQLMLVLVTT-----RPKIFRVETLIER 228
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
L S+ + S+ N N IFG +R L G + + G + ++ SF
Sbjct: 229 L------TSQFPNLVSIVQNINDQNTNAIFGQEFRLLHGSETIADTMLGNEFEISAPSFY 282
Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q NT + L + + A V D Y+G G IGLS A++ + V VE+ +++ L
Sbjct: 283 QVNTEMAEKLYQTAIDFAELSADDVVIDAYSGIGTIGLSF--AKQVKHVYGVEVVEKAVL 340
Query: 337 SFEKTVSRLPKSVDGNISW--HNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+K +R +D N+++ +A+++++ W+ V V+ VDPPRKGL S + A
Sbjct: 341 DSQKNAAR--NGID-NVTYVCDSAESAMQ--KWVADGVKPTVIFVDPPRKGLTESFIKAS 395
Query: 392 QSI 394
S+
Sbjct: 396 TSV 398
>gi|228970500|ref|ZP_04131151.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228789232|gb|EEM37160.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar thuringiensis str. T01001]
Length = 465
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 154/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIG-LLDF----TFDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L D + +R
Sbjct: 85 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLADVPVHPVLGMKNPWVYRN 142
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 143 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEE 202
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 203 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 244
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 245 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 299
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 300 PEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 359
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 360 -AELNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 409
>gi|375361485|ref|YP_005129524.1| hypothetical protein BACAU_0795 [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|371567479|emb|CCF04329.1| hypothetical protein BACAU_0795 [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
Length = 466
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 87/372 (23%), Positives = 159/372 (42%), Gaps = 73/372 (19%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIV---DEATDF-FKSIGLLDFTFDSCRLYGWRC 102
CP + C GC T + R I++ + T F + + + D T + +R
Sbjct: 82 CPVYDQCGGCQLQHLAYTQQLREKRDIVIQSLERHTRFNVEEMNIKD-TIGMDNPWNYRN 140
Query: 103 RAKLAV-RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDE 161
+++ V R S S + GLY +H +V I C HP N ++R+ +++ NV Y+E
Sbjct: 141 KSQFQVGRSQSGSIIAGLYGLDSHKIVPIKECIVQHPATNKTTGIVRRILEKHNVSVYNE 200
Query: 162 DDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
+ GD+R + V + G+VQ+ LV + E PN D++ +
Sbjct: 201 RTKKGDVRTIVTRVG-----------FETGEVQVVLV--TAKETLPNKDEIVKAIQ---- 243
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
+R + S+ N + +VIFG++ + L G E +G + L+ +F Q N
Sbjct: 244 -----NRLPEVKSIIQNVNGARTSVIFGDKTKALAGSHAIQEVLGDVSFELSARAFFQLN 298
Query: 282 ----TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
+ +D + + Q + V D Y G G IG+ +++ K ++ +++ KES
Sbjct: 299 PEQTVKLYDEVKQAAQ--LTGKEKVVDAYCGVGTIGMWVSSGAK--EIRGMDVIKESIDD 354
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPPRKG 382
+K N H N+ +++ G+ DV++VDPPR G
Sbjct: 355 AKK-----------NAKKHGIKNA----AYVTGTAEHWLPKWTKEGFRPDVVIVDPPRTG 399
Query: 383 LDSSLVHALQSI 394
D + + ++ +
Sbjct: 400 CDRTFLDTIKKV 411
>gi|257416880|ref|ZP_05593874.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis
ARO1/DG]
gi|257158708|gb|EEU88668.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis
ARO1/DG]
Length = 456
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 86/361 (23%), Positives = 147/361 (40%), Gaps = 58/361 (16%)
Query: 54 CPHFQSCSGCTHEFNLHRPII------VDEATDFFKSIGLLDF----TFDSCRLYGWRCR 103
CP +++C GC + ++ + + +A + FK + ++ T + +R +
Sbjct: 76 CPVYETCGGCQLQHLAYKAQLDFKKDLLKQALNKFKPVNYQNYELRKTIGMENPWNYRNK 135
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A+ +R GLYQ +H +V I +C P + L + + + YDE
Sbjct: 136 AQFQLRQIDGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERK 195
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-----ESLAEF 218
+G R + + V + G+VQ+ + S+ K P +K+ E L E
Sbjct: 196 NSGIFRTLMVRVGI-----------QTGEVQVVFITQSK--KFPQKEKMVRAINEQLPEV 242
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ S+ N Q +++ G+ HL G+ E++ + L+P +F
Sbjct: 243 V--------------SIMQNVQNKKTSLVMGDDTLHLWGKESIEEHINDVVFDLSPRAFF 288
Query: 279 QANTRAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAA-ARKCRSVKCVEINKESQ 335
Q N ++L + K + +V D Y G G IGLSLA A + R + + +
Sbjct: 289 QLNPEQTEVLYNEGIKALDLQPNETVVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDD- 347
Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWL---VGSDVLVVDPPRKGLDSSLVHA 390
+R G + H A + E L W D +VVDPPR GLD L+ A
Sbjct: 348 -------ARFNAKRLGVTNTHYAVGTAEDLLPKWFKEGFKPDAIVVDPPRTGLDRKLLTA 400
Query: 391 L 391
L
Sbjct: 401 L 401
>gi|154685279|ref|YP_001420440.1| hypothetical protein RBAM_008250 [Bacillus amyloliquefaciens FZB42]
gi|394992387|ref|ZP_10385167.1| YfjO [Bacillus sp. 916]
gi|429504307|ref|YP_007185491.1| hypothetical protein B938_03965 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|154351130|gb|ABS73209.1| YfjO [Bacillus amyloliquefaciens FZB42]
gi|393806719|gb|EJD68058.1| YfjO [Bacillus sp. 916]
gi|429485897|gb|AFZ89821.1| hypothetical protein B938_03965 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
Length = 466
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 87/372 (23%), Positives = 159/372 (42%), Gaps = 73/372 (19%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIV---DEATDF-FKSIGLLDFTFDSCRLYGWRC 102
CP + C GC T + R I++ + T F + + + D T + +R
Sbjct: 82 CPVYDQCGGCQLQHLAYTQQLREKRDIVIQSLERHTRFNVEEMNIKD-TIGMDNPWNYRN 140
Query: 103 RAKLAV-RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDE 161
+++ V R S S + GLY +H +V I C HP N ++R+ +++ NV Y+E
Sbjct: 141 KSQFQVGRSQSGSIIAGLYGLDSHKIVPIKECIVQHPATNKTTGIVRRILEKHNVSVYNE 200
Query: 162 DDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
+ GD+R + V + G+VQ+ LV + E PN D++ +
Sbjct: 201 RTKKGDVRTIVTRVG-----------FETGEVQVVLV--TAKETLPNKDEIVKAIQ---- 243
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
+R + S+ N + +VIFG++ + L G E +G + L+ +F Q N
Sbjct: 244 -----NRLPEVKSIIQNVNGARTSVIFGDKTKALAGSHAIQEVLGDVSFELSARAFFQLN 298
Query: 282 ----TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
+ +D + + Q + V D Y G G IG+ +++ K ++ +++ KES
Sbjct: 299 PEQTVKLYDEVKQAAQ--LTGKEKVVDAYCGVGTIGMWVSSGAK--EIRGMDVIKESIDD 354
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPPRKG 382
+K N H N+ +++ G+ DV++VDPPR G
Sbjct: 355 AKK-----------NAKKHGIKNA----AYVTGTAEHWLPKWTKEGFRPDVVIVDPPRTG 399
Query: 383 LDSSLVHALQSI 394
D + + ++ +
Sbjct: 400 CDRTFLDTIKKV 411
>gi|414158453|ref|ZP_11414747.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
F0441]
gi|410870998|gb|EKS18955.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
F0441]
Length = 451
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 141/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ V +LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGILETGFFRKNSHDLMPLEDFFIQDPVIDQVVVVLRDLLRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P ++E L E L
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVILVTTR-----PKVFRVEQLIEQL 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG W+ L G+ + + G + +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWKTLYGQDYITDQMLGNNFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + A V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKADDVVIDAYSGIGTIGLSV--AKHVKEVYGVEVIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K + L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 342 SQKNAA-LNNITNAHYVCDTAENAMK--NWLKEGIQPTVILVDPPRKGLTESFIKASSQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|423602170|ref|ZP_17578170.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD078]
gi|401226885|gb|EJR33416.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD078]
Length = 458
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 154/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNECGGCQLQHLTYEGQLKAK--EKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKEAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 293 PEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 352
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 353 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|229165298|ref|ZP_04293085.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH621]
gi|228618123|gb|EEK75161.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH621]
Length = 459
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 154/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNECGGCQLQHLTYEGQLKAK--EKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKEAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 293 PEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 352
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 353 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|407796698|ref|ZP_11143650.1| RNA methyltransferase, TrmA family protein [Salimicrobium sp. MJ3]
gi|407018852|gb|EKE31572.1| RNA methyltransferase, TrmA family protein [Salimicrobium sp. MJ3]
Length = 470
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 88/356 (24%), Positives = 158/356 (44%), Gaps = 46/356 (12%)
Query: 54 CPHFQSCSGCTHEF------NLHRPIIVDEATDFF---KSIGLLDFTFDSCRLYGWRCRA 104
CP+F C GC + N + IVD F + I +D FD +R +
Sbjct: 93 CPYFYVCGGCQIQHMTPLAQNDFKQSIVDRLMQPFGKPERIMTMDHPFD------YRNKN 146
Query: 105 KLAVRGTSTSPLIG-LYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
+ +IG LY +H++++I C H P+ +A + +++ + + Y+ED
Sbjct: 147 TMTFGENRKRQIIGGLYAANSHDLIEIDRCLIHDPKADAIIATIKELLVSFKLRAYNEDT 206
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNG 223
G LR+V + T TS G+V + LV + K N+ FL
Sbjct: 207 NRGFLRHV--LIKTGKTS---------GEVMVVLVTGTPEFKGKNN--------FLK--- 244
Query: 224 GSRSREH-YIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ R+H I ++ N T +++++ G + + L G+ + +GG++ ++ SF Q N
Sbjct: 245 -ALRRDHPEISTIIQNINTRSDSMVLGKQEKVLFGKGYITDTIGGMEFEISAKSFYQINP 303
Query: 283 RAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+ L K + +V D Y G G IG L A+++ V VE+NK + +
Sbjct: 304 VQTEKLYGKAVELAGLTGKETVIDAYCGIGTIG--LLASKQAGKVIGVEMNKGAVKDAIR 361
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWL-VGSDVLVVDPPRKGLDSSLVHALQSIG 395
SR K + +A N + ++ +DV+++DPPR G D + + ++ +G
Sbjct: 362 N-SRHNKVTNARFYEGDAGNFMMKMAAEGKKADVVILDPPRSGSDEAFLSSVVKLG 416
>gi|384514038|ref|YP_005709131.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecalis
OG1RF]
gi|430362247|ref|ZP_19426977.1| RNA methyltransferase [Enterococcus faecalis OG1X]
gi|430366878|ref|ZP_19427648.1| RNA methyltransferase [Enterococcus faecalis M7]
gi|327535927|gb|AEA94761.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecalis
OG1RF]
gi|429512158|gb|ELA01773.1| RNA methyltransferase [Enterococcus faecalis OG1X]
gi|429516884|gb|ELA06359.1| RNA methyltransferase [Enterococcus faecalis M7]
Length = 456
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 86/361 (23%), Positives = 147/361 (40%), Gaps = 58/361 (16%)
Query: 54 CPHFQSCSGCTHEFNLHRPII------VDEATDFFKSIGLLDF----TFDSCRLYGWRCR 103
CP +++C GC + ++ + + +A + FK + ++ T + +R +
Sbjct: 76 CPVYETCGGCQLQHLAYKAQLDFKKDLLKQALNKFKPVNYQNYELRKTIGMENPWNYRNK 135
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A+ +R GLYQ +H +V I +C P + L + + + YDE
Sbjct: 136 AQFQLRQIDGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERK 195
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-----ESLAEF 218
+G R + + V + G+VQ+ + S+ K P +K+ E L E
Sbjct: 196 NSGIFRTLMVRVGI-----------QTGEVQVVFITQSK--KFPQKEKMVRAINEQLPEV 242
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ S+ N Q +++ G+ HL G+ E++ + L+P +F
Sbjct: 243 V--------------SIMQNVQNKKTSLVMGDDTLHLWGKESIEEHINDVVFDLSPRAFF 288
Query: 279 QANTRAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAA-ARKCRSVKCVEINKESQ 335
Q N ++L + K + +V D Y G G IGLSLA A + R + + +
Sbjct: 289 QLNPEQTEVLYNEGIKALDLQPNETVVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDD- 347
Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWL---VGSDVLVVDPPRKGLDSSLVHA 390
+R G + H A + E L W D +VVDPPR GLD L+ A
Sbjct: 348 -------ARFNAKRLGVTNTHYAVGTAEDLLPKWFKEGFKPDAIVVDPPRTGLDRKLLTA 400
Query: 391 L 391
L
Sbjct: 401 L 401
>gi|315613133|ref|ZP_07888043.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
ATCC 49296]
gi|315314695|gb|EFU62737.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
ATCC 49296]
Length = 452
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 141/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ V +LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFFIQDPVIDQVVVVLRDLLRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P ++E L + L
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVILVTTR-----PKIFRVEQLIDQL 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMFGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT+ + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTQMAEKLYQTAIDFAELREDDVVIDAYSGIGTIGLSV--AKHVKEVYGVEMIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K + L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 342 SQKNAA-LNNITNAHYVCDTAENAMK--NWLKEGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|229055159|ref|ZP_04195586.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH603]
gi|228721151|gb|EEL72681.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH603]
Length = 465
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 154/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 85 ECPVYNECGGCQLQHLTYEGQLKAK--EKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRN 142
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 143 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKNGISAYNEE 202
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + + E +A
Sbjct: 203 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKEAIIEEIA----- 244
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 245 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 299
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 300 PEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 359
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 360 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 409
>gi|228937613|ref|ZP_04100251.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228977069|ref|ZP_04137472.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
Bt407]
gi|452196692|ref|YP_007476773.1| 23S rRNA (Uracil-5-) -methyltransferase RumA [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
gi|228782686|gb|EEM30861.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
Bt407]
gi|228822094|gb|EEM68084.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|452102085|gb|AGF99024.1| 23S rRNA (Uracil-5-) -methyltransferase RumA [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
Length = 454
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 154/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIG-LLDF----TFDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L D + +R
Sbjct: 74 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLADVPVHPVLGMKNPWVYRN 131
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 132 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEE 191
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 192 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 233
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 234 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 288
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 289 PEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 348
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 349 -AELNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 398
>gi|423334719|ref|ZP_17312497.1| RNA methyltransferase [Lactobacillus reuteri ATCC 53608]
gi|337728240|emb|CCC03335.1| RNA methyltransferase [Lactobacillus reuteri ATCC 53608]
Length = 456
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 87/348 (25%), Positives = 153/348 (43%), Gaps = 66/348 (18%)
Query: 91 TFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQG 150
T R Y +R +A++ V+ G Y+ G+HN+V I P I+ A+ ++R
Sbjct: 121 TMGMDRPYHYRNKAQVPVKMVRGQLETGFYKRGSHNLVPIEDFYIQDPEIDKAIVVIRDL 180
Query: 151 IKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRN---EKSP 207
+++ ++ PYDE G +R V + Y + ++ + LV N++ EK
Sbjct: 181 LRQYHITPYDEQTGKGVIRTVMV-----------RRGYYSHEMMVALVTNTKRLPMEKQI 229
Query: 208 NSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGG 267
+ + E + S+ N N + G++ + L G + + + G
Sbjct: 230 VDGIVAGVPE--------------VKSIVQNINDKRTNRLLGDKNKTLWGADEIHDQLLG 275
Query: 268 IDISLAPSSFGQANTRAFDILLRKL--QKYVPYGASVTDLYAGAGVIGLSLAAARKCRSV 325
ID +++P SF Q N + + L + + +V D Y G G I SLA A+ + V
Sbjct: 276 IDFAISPLSFYQVNPQQTERLYQTAIDNAGLDGNQTVIDAYCGIGTI--SLAVAKHAKQV 333
Query: 326 KCVEINKESQLSFEKTVSRLPKSVDGNISWHNAD-NSIEPLSWLVGS------------- 371
VEI +P +++ + HNA N I+ ++VG
Sbjct: 334 YGVEI--------------VPAAIED--AKHNAKRNGIKNAKFVVGKAEEQFAKWQAEGL 377
Query: 372 --DVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKR 417
DV++VDPPRKGL SL+ A +G +K +S + +++V++ KR
Sbjct: 378 KPDVVIVDPPRKGLAESLIEATGKMGP--KKVIYVSCNPATLVRDIKR 423
>gi|163938323|ref|YP_001643207.1| RNA methyltransferase [Bacillus weihenstephanensis KBAB4]
gi|423515169|ref|ZP_17491650.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuA2-4]
gi|423664351|ref|ZP_17639516.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
VDM022]
gi|163860520|gb|ABY41579.1| RNA methyltransferase, TrmA family [Bacillus weihenstephanensis
KBAB4]
gi|401167585|gb|EJQ74866.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuA2-4]
gi|401293231|gb|EJR98876.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
VDM022]
Length = 458
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 154/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNECGGCQLQHLTYEGQLKAK--EKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKEAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 293 PEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 352
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 353 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|429765172|ref|ZP_19297473.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium celatum
DSM 1785]
gi|429186793|gb|EKY27726.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium celatum
DSM 1785]
Length = 459
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 95/378 (25%), Positives = 158/378 (41%), Gaps = 68/378 (17%)
Query: 50 CALQCPHFQSCSGCT---HEFNLHRPIIVDEATDFFKSIGLLD-----FTFDSCRLYGWR 101
C C C GC ++N + D IG LD F + +R
Sbjct: 72 CETSCKIHNRCGGCKLQHSKYNEQLNFKFERVKDCISKIGKLDSSLVKFPLGMEEPWRYR 131
Query: 102 CRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDE 161
+ +L + + IG + +H ++D+ C + VEL R+ IK+ N++PY+
Sbjct: 132 NKVQLPIGLVNGELKIGFFAPRSHEIIDMETCLIQDEIADKVVELTREWIKKYNIKPYNI 191
Query: 162 D---DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
D D TG +R++ + + + +V + LV N N K E +
Sbjct: 192 DGNYDETGIVRHIMI-----------RRGFTSNEVMVVLVTNGENLPY----KQEFINLI 236
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ G I SV N + NVI G + L GE + + +++P SF
Sbjct: 237 VDNIPG-------IKSVIQNVNSKPTNVILGEKCITLWGEPTISDYIDKFRFNISPLSFF 289
Query: 279 QANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q N ++L K +Y +V D Y G G I L L ++K + V VEI
Sbjct: 290 QVNPIQTEVLYGKALEYAGLTGDETVFDAYCGTGTITLFL--SQKAKKVYGVEI------ 341
Query: 337 SFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVG---------------SDVLVVDPPRK 381
+P++++ N + + +N+++ + + VG +DV+VVDPPRK
Sbjct: 342 --------IPQAIE-NANINARENNVDNVEFFVGESEVVIPDLINSGVKADVVVVDPPRK 392
Query: 382 GLDSSLVHALQSIGSAER 399
G D L++A+ +I AER
Sbjct: 393 GCDIKLLNAITNI-DAER 409
>gi|421732513|ref|ZP_16171634.1| hypothetical protein WYY_15592 [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|407073642|gb|EKE46634.1| hypothetical protein WYY_15592 [Bacillus amyloliquefaciens subsp.
plantarum M27]
Length = 466
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 87/372 (23%), Positives = 159/372 (42%), Gaps = 73/372 (19%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIV---DEATDF-FKSIGLLDFTFDSCRLYGWRC 102
CP + C GC T + R I++ + T F + + + D T + +R
Sbjct: 82 CPVYDQCGGCQLQHLAYTQQLREKRDIVIQSLERHTRFNVEEMNIKD-TIGMDNPWNYRN 140
Query: 103 RAKLAV-RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDE 161
+++ V R S S + GLY +H +V I C HP N ++R+ +++ NV Y+E
Sbjct: 141 KSQFQVGRSQSGSIIAGLYGLDSHKIVPIKECIVQHPATNKTTGIVRRILEKHNVSVYNE 200
Query: 162 DDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
+ GD+R + V + G+VQ+ LV + E PN D++ +
Sbjct: 201 RTKKGDVRTIVTRVG-----------FETGEVQVVLV--TAKETLPNKDEIVKAIQ---- 243
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
+R + S+ N + +VIFG++ + L G E +G + L+ +F Q N
Sbjct: 244 -----NRLPEVKSIIQNVNGARTSVIFGDKTKALAGSHAIQEVLGDVSFELSARAFFQLN 298
Query: 282 ----TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
+ +D + + Q + V D Y G G IG+ +++ K ++ +++ KES
Sbjct: 299 PEQTVKLYDEVKQAAQ--LTGKEKVVDAYCGVGTIGMWVSSGAK--EIRGMDVIKESIDD 354
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPPRKG 382
+K N H N+ +++ G+ DV++VDPPR G
Sbjct: 355 AKK-----------NAKKHGIKNA----AYVTGTAEHWLPKWTKEGFRPDVVIVDPPRTG 399
Query: 383 LDSSLVHALQSI 394
D + + ++ +
Sbjct: 400 CDRTFLDTIKKV 411
>gi|406671812|ref|ZP_11079051.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Facklamia hominis CCUG
36813]
gi|405581062|gb|EKB55121.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Facklamia hominis CCUG
36813]
Length = 457
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 145/306 (47%), Gaps = 46/306 (15%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+G+R +A++ V+ + G Y++ +H+++ + + PRI+ + L+R ++ +
Sbjct: 129 WGYRNKAQIPVQELNGQLETGFYRKNSHDLIPVEDFQIQDPRIDQVIRLVRDRLRYYQIP 188
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESL-A 216
YDE G +R+V Y +G++ + LV R + D E+L A
Sbjct: 189 AYDEKTHQGVIRHV-----------IVKRGYYSGQIMVVLVTRQR-----DFDHKEALVA 232
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
+ + + G + S+ + NVI G++ L G+ + + + G+ +A S
Sbjct: 233 DLIKQIDG-------LVSLMQSINPKRTNVILGDQTVLLWGQAYYEDQMLGMTFRIAAQS 285
Query: 277 FGQANT----RAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLA-AARKCRSVKCVEIN 331
F Q NT R ++ ++R Q + +V D Y G G I L+LA +A+K +++ V
Sbjct: 286 FYQVNTPQAERMYEEVVRLAQ--LDGTQTVLDAYCGIGTISLALAQSAKKVYAMEIVPAA 343
Query: 332 KE-----SQLS-FEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDS 385
E +QL+ ++ V + K+ D W+ A + DV+VVDPPRKGLD
Sbjct: 344 VEMARMNAQLNGIDRAVFEVGKAEDWLAKWNQAG---------IHFDVVVVDPPRKGLDP 394
Query: 386 SLVHAL 391
S V AL
Sbjct: 395 SFVQAL 400
>gi|75760089|ref|ZP_00740152.1| tRNA (Uracil-5-) -methyltransferase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74492439|gb|EAO55592.1| tRNA (Uracil-5-) -methyltransferase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 406
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 85/343 (24%), Positives = 147/343 (42%), Gaps = 45/343 (13%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF--TFDSCRLYGWRCRA 104
CP ++ C GC + N R I+V + K+ T + +R ++
Sbjct: 80 CPVYEECGGCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKS 139
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+L V + GLY++ +H ++DI HC H N A +++R+ +++LNV Y+E +
Sbjct: 140 QLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQ 199
Query: 165 TGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
G +R + + AV T G+VQ+TL+ + E+ PN ++ +AE
Sbjct: 200 KGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--VAEV---- 238
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ + + S+ N +VIFG++ L G+ E +G + L+ +F Q N
Sbjct: 239 ---QKQIPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLNP 295
Query: 283 RAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+L + +K + D Y G G IGL L A V+ +++ E+ K
Sbjct: 296 EQTIVLYDEAKKAAALTGDEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIADARK 353
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPR 380
R + N + W+ DV+VVDPPR
Sbjct: 354 NAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPR 393
>gi|423485617|ref|ZP_17462299.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BtB2-4]
gi|423491342|ref|ZP_17467986.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
CER057]
gi|423501865|ref|ZP_17478482.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
CER074]
gi|423596622|ref|ZP_17572649.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD048]
gi|423671765|ref|ZP_17646769.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
VDM034]
gi|423677773|ref|ZP_17652708.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
VDM062]
gi|401151822|gb|EJQ59264.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
CER074]
gi|401160630|gb|EJQ68006.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
CER057]
gi|401219508|gb|EJR26164.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD048]
gi|401290806|gb|EJR96491.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
VDM034]
gi|401306243|gb|EJS11752.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
VDM062]
gi|402441083|gb|EJV73056.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BtB2-4]
Length = 458
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 154/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNECGGCQLQHLTYEGQLKAK--EKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKEAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 293 PEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 352
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 353 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|423590143|ref|ZP_17566207.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD045]
gi|401220965|gb|EJR27591.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD045]
Length = 458
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 154/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIG-LLDF----TFDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L D + +R
Sbjct: 78 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLADVPVHPVLGMQNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVRSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 293 PEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 352
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 353 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|228956753|ref|ZP_04118539.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228802941|gb|EEM49773.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar pakistani str. T13001]
Length = 455
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 154/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIG-LLDF----TFDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L D + +R
Sbjct: 74 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLADVPVHPVLGMKNPWVYRN 131
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 132 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEE 191
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 192 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 233
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 234 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 288
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 289 PEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 348
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 349 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 398
>gi|402298016|ref|ZP_10817747.1| RNA methyltransferase [Bacillus alcalophilus ATCC 27647]
gi|401726787|gb|EJS99999.1| RNA methyltransferase [Bacillus alcalophilus ATCC 27647]
Length = 461
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 91/355 (25%), Positives = 153/355 (43%), Gaps = 42/355 (11%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIG-LLDF----TFDSCRLYGWRCRAK 105
CP F C GC + + + + D + IG + D T + +R +++
Sbjct: 78 CPIFHQCGGCQIQHLSYEAQLKMKQKQVQDVLERIGGIKDVPVHPTLGMDEPWQYRNKSQ 137
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
+ + G YQ+ +H ++D+ C + AV+ +++ + YDE+
Sbjct: 138 VPFGEKDGELIAGFYQKRSHRIIDMDSCIIQQKENDIAVQAVKEIASRYGIRAYDEEKHR 197
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGS 225
G LR+V + + + G++ I LV +R ++ PN +N
Sbjct: 198 GTLRHVVV-----------RQGKKTGELMIVLV--TRGKELPNK-----------KNIID 233
Query: 226 RSREHY--IHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTR 283
RE + SV N NVIFG+ + L GE + +G I +++ SF Q N
Sbjct: 234 DIREALPGVTSVVQNINPKRTNVIFGDETKVLWGEEYIHDYIGDIRFAISARSFYQVNPA 293
Query: 284 AFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y +V D Y G G I L L A+K + V VEI E+ +S K
Sbjct: 294 QTKVLYDKALEYADIKGHETVIDAYCGIGTISLFL--AQKAKRVLGVEIVPEA-ISDAKQ 350
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWLVGS--DVLVVDPPRKGLDSSLVHALQSI 394
+R+ + + + A+ I P + G DV+VVDPPRKG D L+ + ++
Sbjct: 351 NARINGFDNVDFAVGEAEKVI-PWWYAQGVRPDVIVVDPPRKGCDDKLLETILAM 404
>gi|229916717|ref|YP_002885363.1| RNA methyltransferase, TrmA family [Exiguobacterium sp. AT1b]
gi|229468146|gb|ACQ69918.1| RNA methyltransferase, TrmA family [Exiguobacterium sp. AT1b]
Length = 454
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 90/359 (25%), Positives = 148/359 (41%), Gaps = 49/359 (13%)
Query: 54 CPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDF-TFDSCRL---YGWRCRA 104
CP F C GC ++E L + + D K +G D D+ + + +R +A
Sbjct: 74 CPIFYQCGGCQLQHFSYEGQLRQK--RERVVDALKRLGQFDVPVHDTIGMPEPWRYRNKA 131
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
++ + + G Y+ +H++V++ C R + A++++R + V YDE
Sbjct: 132 QVPFKQEGDRLVSGFYRPRSHDIVEMSECLIQDERNDKAIQVVRDVLDARGVPAYDEKTG 191
Query: 165 TGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPN---SDKLESLAEFLWR 221
G +R+V A Y +G++ I L+ + K N +D +E L +
Sbjct: 192 RGVIRHVM-----------ARYGYHSGELMIVLITKTTKLKGVNEIVADIVERLPD---- 236
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
+ S+ N NVI G + L G + + G+ +++P SF Q N
Sbjct: 237 ----------VTSIMQNVNPDKTNVILGATNKLLYGHETIEDKIAGLTFTISPHSFFQVN 286
Query: 282 TRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+ L K +Y + V D Y G G I L L ARK V VE+ E+ +
Sbjct: 287 PVQTEKLYGKALEYAQLSGTEQVVDAYCGIGTISLFL--ARKAAHVYGVEVVPEAIEDAK 344
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSIG 395
+ L +D A + P W V DV+VVDPPRKG S + + +G
Sbjct: 345 QNA--LVNEIDNVTYACGAAEDVLP-QWKKDGVNPDVIVVDPPRKGCAESFLETMVEMG 400
>gi|423646444|ref|ZP_17622014.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD169]
gi|423653265|ref|ZP_17628564.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD200]
gi|401287377|gb|EJR93173.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD169]
gi|401301981|gb|EJS07566.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD200]
Length = 458
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 154/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIG-LLDF----TFDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L D + +R
Sbjct: 78 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLADVPVHPVLGMQNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 293 PEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 352
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 353 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|423632237|ref|ZP_17607983.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD154]
gi|401261562|gb|EJR67721.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD154]
Length = 459
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 154/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIG-LLDF----TFDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L D + +R
Sbjct: 78 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLADVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 293 PEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 352
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 353 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|228919254|ref|ZP_04082624.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228840361|gb|EEM85632.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 454
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 154/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 74 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRN 131
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 132 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEE 191
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + + E +A
Sbjct: 192 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKNAIIEEIA----- 233
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 234 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 288
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 289 PEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 348
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 349 AT-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 398
>gi|449531583|ref|XP_004172765.1| PREDICTED: uncharacterized protein LOC101225661, partial [Cucumis
sativus]
Length = 103
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 70/103 (67%), Gaps = 6/103 (5%)
Query: 1 MPPCLLSARPPSPVITCRVSLGAVR--NPPPPAPPSSLPLDPPAANLP----SLTCALQC 54
M C + RP +P +TC++S ++R +P P P L A ++P S C+LQC
Sbjct: 1 MLHCHFTPRPITPFVTCQLSTSSLRIPSPSQPTPLPPPLLSLAAKSIPDSVSSPACSLQC 60
Query: 55 PHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRL 97
HFQSCSGCTHEF+LHRP+IV+EAT FF +G+LDFTFDSC+L
Sbjct: 61 THFQSCSGCTHEFDLHRPVIVEEATQFFNDLGVLDFTFDSCKL 103
>gi|256763335|ref|ZP_05503915.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T3]
gi|256963815|ref|ZP_05567986.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis
HIP11704]
gi|307271762|ref|ZP_07553033.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0855]
gi|256684586|gb|EEU24281.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T3]
gi|256954311|gb|EEU70943.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis
HIP11704]
gi|306511640|gb|EFM80639.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0855]
Length = 456
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 85/361 (23%), Positives = 149/361 (41%), Gaps = 58/361 (16%)
Query: 54 CPHFQSCSGCTHEFNLHRPII------VDEATDFFKSIGLLDF----TFDSCRLYGWRCR 103
CP +++C GC + ++ + + +A + FK + ++ T + +R +
Sbjct: 76 CPVYETCGGCQLQHLAYKAQLDFKKDLLKQALNKFKPVNYQNYELRKTIGMENPWNYRNK 135
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A+ +R GLYQ +H +V I +C P + L + + + YDE
Sbjct: 136 AQFQLRQIDGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNKFQLPIYDERK 195
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-----ESLAEF 218
+G R + + V + G+VQ+ + ++++K P +K+ E L E
Sbjct: 196 NSGIFRTLMVRVGI-----------QTGEVQVVFI--TQSQKFPQKEKMVRAINEQLPEV 242
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ S+ N Q +++ G+ HL G+ E++ + L+P +F
Sbjct: 243 V--------------SIMQNVQNKKTSLVMGDDTLHLWGKESIEEHINDVVFDLSPRAFF 288
Query: 279 QANTRAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAA-ARKCRSVKCVEINKESQ 335
Q N ++L + K + +V D Y G G IGLSLA A + R + + +
Sbjct: 289 QLNPEQTEVLYNEGIKALDLQPNETVVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDD- 347
Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWL---VGSDVLVVDPPRKGLDSSLVHA 390
+R G + H A + E L W D +VVDPPR GLD L+ A
Sbjct: 348 -------ARFNAKRLGVTNTHYAVGTAEDLLPKWFKEGFKPDAIVVDPPRTGLDRKLLTA 400
Query: 391 L 391
L
Sbjct: 401 L 401
>gi|229077678|ref|ZP_04210308.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock4-2]
gi|228705619|gb|EEL57975.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock4-2]
Length = 454
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 154/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 74 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRN 131
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 132 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEE 191
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + + E +A
Sbjct: 192 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKNAIIEEIA----- 233
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 234 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 288
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 289 PEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 348
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 349 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 398
>gi|300172623|ref|YP_003771788.1| RNA m5u methyltransferase family [Leuconostoc gasicomitatum LMG
18811]
gi|299887001|emb|CBL90969.1| RNA m5u methyltransferase family [Leuconostoc gasicomitatum LMG
18811]
Length = 498
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 85/314 (27%), Positives = 140/314 (44%), Gaps = 70/314 (22%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
Y +R +A+ VR IG+Y+ G+H++VD+P P + +R+ + +L+V
Sbjct: 171 YEYRNKAQFPVRKIGKKLSIGMYKRGSHDLVDLPVVHTQDPITMKVLRTIRELLDKLSVS 230
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL----- 212
Y+ED G ++ + + V+ + G+VQ+T V N+ + P L
Sbjct: 231 IYNEDKNHGTVKTIVVRVS-----------HTTGEVQLTFVTNT--DGFPGDTALITAIN 277
Query: 213 ESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISL 272
++L E + ++ NF ++++G+ L G+ E V G L
Sbjct: 278 QALPE--------------VTGIFQNFNPGRTSLVWGDETIKLWGKDYIEETVMGKTFQL 323
Query: 273 APSSFGQANTRAFDILLRK--LQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEI 330
+P +F Q N ++ ++ L + + + D YAG G IGLSLA K V+ +EI
Sbjct: 324 SPRAFMQLNYTQMAVVYKEALLALDLTHADKLVDAYAGVGTIGLSLAD--KVGEVRGMEI 381
Query: 331 NKESQLSFEKTVSRLPKSV-DGNISWHNAD-NSIEPLSWLVGS---------------DV 373
+P++V D NI NA N IE + VG+ D
Sbjct: 382 --------------IPEAVDDANI---NAKINHIENAQYEVGTAEELFPKWQSEGWLADA 424
Query: 374 LVVDPPRKGLDSSL 387
LVVDPPR GLD++L
Sbjct: 425 LVVDPPRTGLDTAL 438
>gi|229176912|ref|ZP_04304308.1| Uncharacterized RNA methyltransferase [Bacillus cereus 172560W]
gi|228606585|gb|EEK64010.1| Uncharacterized RNA methyltransferase [Bacillus cereus 172560W]
Length = 454
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 154/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 74 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMENPWVYRN 131
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 132 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEE 191
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + + E +A
Sbjct: 192 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKNAIIEEIA----- 233
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 234 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 288
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 289 PEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 348
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 349 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 398
>gi|333447212|ref|ZP_08482154.1| RNA m5u methyltransferase family protein [Leuconostoc inhae KCTC
3774]
Length = 521
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 85/314 (27%), Positives = 140/314 (44%), Gaps = 70/314 (22%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
Y +R +A+ VR IG+Y+ G+H++VD+P P + +R+ + +L+V
Sbjct: 194 YEYRNKAQFPVRKIGKKLSIGMYKRGSHDLVDLPVVHTQDPITMKVLRTIRELLDKLSVS 253
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL----- 212
Y+ED G ++ + + V+ + G+VQ+T V N+ + P L
Sbjct: 254 IYNEDKNHGTVKTIVVRVS-----------HTTGEVQLTFVTNT--DGFPGDTALITAIN 300
Query: 213 ESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISL 272
++L E + ++ NF ++++G+ L G+ E V G L
Sbjct: 301 QALPE--------------VTGIFQNFNPGRTSLVWGDETIKLWGKDYIEETVMGKTFQL 346
Query: 273 APSSFGQANTRAFDILLRK--LQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEI 330
+P +F Q N ++ ++ L + + + D YAG G IGLSLA K V+ +EI
Sbjct: 347 SPRAFMQLNYTQMAVVYKEALLALDLTHADKLVDAYAGVGTIGLSLAD--KVGEVRGMEI 404
Query: 331 NKESQLSFEKTVSRLPKSV-DGNISWHNAD-NSIEPLSWLVGS---------------DV 373
+P++V D NI NA N IE + VG+ D
Sbjct: 405 --------------IPEAVDDANI---NAKINHIENAQYEVGTAEELFPKWQSEGWLADA 447
Query: 374 LVVDPPRKGLDSSL 387
LVVDPPR GLD++L
Sbjct: 448 LVVDPPRTGLDTAL 461
>gi|229009816|ref|ZP_04167036.1| Uncharacterized RNA methyltransferase [Bacillus mycoides DSM 2048]
gi|228751434|gb|EEM01240.1| Uncharacterized RNA methyltransferase [Bacillus mycoides DSM 2048]
Length = 465
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 88/355 (24%), Positives = 154/355 (43%), Gaps = 46/355 (12%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 85 ECPVYNECGGCQLQHLTYEGQLKAK--EKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRN 142
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 143 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEE 202
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + + E +A
Sbjct: 203 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKEAIIEEIA----- 244
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 245 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 299
Query: 282 TRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L K +Y +V D Y G G I L L A+K + V VEI E+
Sbjct: 300 PEQTKVLYDKTLEYAKLNGDETVIDAYCGIGSISLFL--AQKAKKVYGVEIVPEAIEDAN 357
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ + L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 358 RNAA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 409
>gi|229125816|ref|ZP_04254842.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-Cer4]
gi|229143116|ref|ZP_04271549.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST24]
gi|228640389|gb|EEK96786.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST24]
gi|228657673|gb|EEL13485.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-Cer4]
Length = 454
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 154/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIG-LLDF----TFDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L D + +R
Sbjct: 74 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLADVPVHPVLGMKNPWVYRN 131
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 132 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEE 191
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 192 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 233
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 234 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 288
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 289 PEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 348
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 349 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 398
>gi|423525926|ref|ZP_17502378.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuA4-10]
gi|401164959|gb|EJQ72287.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuA4-10]
Length = 458
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 88/355 (24%), Positives = 154/355 (43%), Gaps = 46/355 (12%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNECGGCQLQHLTYEGQLKAK--EKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKEAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L K +Y +V D Y G G I L L A+K + V VEI E+
Sbjct: 293 PEQTKVLYDKTLEYAKLNGDETVIDAYCGIGSISLFL--AQKAKKVYGVEIVPEAIEDAN 350
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ + L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 351 RNAA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|430748973|ref|YP_007211881.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermobacillus
composti KWC4]
gi|430732938|gb|AGA56883.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermobacillus
composti KWC4]
Length = 465
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 101/380 (26%), Positives = 150/380 (39%), Gaps = 83/380 (21%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYG------- 99
CP ++ C GC + R ++D T K + + D + ++
Sbjct: 71 CPIYRQCGGCQLQHMDYAAQLAWKRQHVIDSLTRIGK-LRVADVAGEGVVVHPTIGMAEP 129
Query: 100 WRCRAKLAV----------RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQ 149
WR R K V G + S + G Y G+H ++D+ C H R + AV L++
Sbjct: 130 WRYRNKAQVPIGMALADMADGAAGSLIGGFYARGSHRIIDMDACFIQHERNDEAVRLVKA 189
Query: 150 GIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNS 209
L + YDE G LR+V + T + T G+ + LV N + P
Sbjct: 190 LGTRLGIRAYDETTGRGLLRHV-VVRTGFAT----------GETMVCLVTN--GTRIPRV 236
Query: 210 DKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGID 269
D+L G R + S+ N T NVIFG+ R L G + + GI
Sbjct: 237 DELVE---------GIRRALPDVRSIVQNVNTRNTNVIFGDETRVLWGSDVIHDELDGIR 287
Query: 270 ISLAPSSFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKC 327
+++ SF Q N L RK +Y +V D Y G G I L L AR+ V
Sbjct: 288 FAISARSFYQVNPAQTVALYRKAVEYAGLTGRETVIDAYCGIGTISLFL--ARRAGKVYG 345
Query: 328 VE--------------INKESQLSFEKTVSR--LPKSVDGNISWHNADNSIEPLSWLVGS 371
VE +N + SFE ++ +P+ W A V +
Sbjct: 346 VESVPEAVEDARRNAALNGIANASFEVGLAEEVIPR-------WREAG---------VAA 389
Query: 372 DVLVVDPPRKGLDSSLVHAL 391
DV+VVDPPRKG D+ L+ +
Sbjct: 390 DVIVVDPPRKGCDAQLLDTI 409
>gi|30018572|ref|NP_830203.1| tRNA (Uracil-5-) -methyltransferase [Bacillus cereus ATCC 14579]
gi|296501148|ref|YP_003662848.1| tRNA (Uracil-5-)-methyltransferase [Bacillus thuringiensis BMB171]
gi|50401538|sp|Q814A6.1|Y364_BACCR RecName: Full=Uncharacterized RNA methyltransferase BC_0364
gi|29894113|gb|AAP07404.1| tRNA (Uracil-5-) -methyltransferase [Bacillus cereus ATCC 14579]
gi|296322200|gb|ADH05128.1| tRNA (Uracil-5-)-methyltransferase [Bacillus thuringiensis BMB171]
Length = 458
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 154/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIG-LLDF----TFDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L D + +R
Sbjct: 78 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLADVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 293 PEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 352
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 353 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|386583827|ref|YP_006080230.1| tRNA (uracil-5-)-methyltransferase-like SAM-dependent
methyltransferase [Streptococcus suis D9]
gi|386583838|ref|YP_006080241.1| tRNA (uracil-5-)-methyltransferase-like SAM-dependent
methyltransferase [Streptococcus suis D9]
gi|353735973|gb|AER16982.1| tRNA (uracil-5-)-methyltransferase-like SAM-dependent
methyltransferase [Streptococcus suis D9]
gi|353735984|gb|AER16993.1| tRNA (uracil-5-)-methyltransferase-like SAM-dependent
methyltransferase [Streptococcus suis D9]
Length = 452
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 146/303 (48%), Gaps = 36/303 (11%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A + VR + G +++ +H++V I H I+A V R +++L+++P
Sbjct: 125 AYRNKAAVPVRRVNGQLETGFFRKNSHDLVPIEDFYIQHKEIDALVLATRDLLRKLDLKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R + + Y +G++ + LV P ++E+L E
Sbjct: 185 YDEKEQTGLVRNIVVRRGHY-----------SGQLMLVLVTT-----RPKIFRVETLIER 228
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
L S+ + S+ N N IFG +R L G + + G + ++ SF
Sbjct: 229 LT------SQFPNLVSIVQNINDQNTNAIFGQEFRLLHGSETITDTMLGNEFEISAPSFY 282
Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q NT + L + + A V D Y+G G +GLS A++ + V VE+ +++ L
Sbjct: 283 QVNTEMAEKLYQTAIDFAELSADDVVIDAYSGIGTVGLSF--AKQVKHVYGVEVVEKAVL 340
Query: 337 SFEKTVSRLPKSVDGNISW--HNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+K +R +D N+++ +A+++++ W+ V V+ VDPPRKGL S + A
Sbjct: 341 DSQKNAAR--NGID-NVTYVCDSAESTMQ--KWVADGVKPTVIFVDPPRKGLTESFIKAS 395
Query: 392 QSI 394
S+
Sbjct: 396 TSV 398
>gi|172036253|ref|YP_001802754.1| putative 23S rRNA methyltransferase/RumA [Cyanothece sp. ATCC
51142]
gi|354553048|ref|ZP_08972355.1| RNA methyltransferase, TrmA family [Cyanothece sp. ATCC 51472]
gi|171697707|gb|ACB50688.1| putative 23S rRNA methyltransferase/RumA [Cyanothece sp. ATCC
51142]
gi|353554878|gb|EHC24267.1| RNA methyltransferase, TrmA family [Cyanothece sp. ATCC 51472]
Length = 455
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 135/305 (44%), Gaps = 32/305 (10%)
Query: 92 FDSCRLYGWRCRAKLAVRGTSTSPL-IGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQG 150
S + G+R +A +R ++T + G YQ TH ++++ C PR+N + ++Q
Sbjct: 121 LSSPEILGYRNKATYPLRRSTTGNVQAGYYQRNTHQLINLNQCPIQDPRLNPILAQVKQD 180
Query: 151 IKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSD 210
I+ Y+E TG LR++ + + R G++ +TLV S+N
Sbjct: 181 IQAQGWSIYNETTGTGKLRHLGLRIGK-----------RTGEILLTLVSTSKN------- 222
Query: 211 KLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDI 270
L F + R + V N+ N IFG + +G E G ++
Sbjct: 223 ----LTHFQQQAESWLQRYPDLVGVSVNYNPHQGNKIFGEETFNSVGRLYLTETFGELNF 278
Query: 271 SLAPSSFGQANTRAFDILLRK-LQKYVPYGA-SVTDLYAGAGVIGLSLAAARKCRSVKCV 328
L+ +F Q NT A +ILL+ L K G ++ D Y G G L L A+K +
Sbjct: 279 QLSSDTFFQVNTEAAEILLKVLLDKLCLTGKENLVDAYCGVGTFTLPL--AKKVAQAVGI 336
Query: 329 EINKESQLSFEKTVSRLPKSVDGNISWHNAD-NSIEPLSWLVGSDVLVVDPPRKGLDSSL 387
E NK + E+ + + N+ ++ I P L D++V+DPPRKG D ++
Sbjct: 337 ESNKN---AIEQGKNNADMNGINNVKFYQGTVEKILPFLNL-DPDIIVLDPPRKGCDRNV 392
Query: 388 VHALQ 392
+H L+
Sbjct: 393 IHTLK 397
>gi|229068074|ref|ZP_04201382.1| Uncharacterized RNA methyltransferase [Bacillus cereus F65185]
gi|228715082|gb|EEL66949.1| Uncharacterized RNA methyltransferase [Bacillus cereus F65185]
Length = 454
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 154/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 74 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRN 131
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 132 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEE 191
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + + E +A
Sbjct: 192 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKNAIIEEIA----- 233
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 234 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 288
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 289 PEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 348
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 349 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 398
>gi|118580724|ref|YP_901974.1| RNA methyltransferase [Pelobacter propionicus DSM 2379]
gi|118503434|gb|ABK99916.1| 23S rRNA m(5)U-1939 methyltransferase [Pelobacter propionicus DSM
2379]
Length = 493
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 83/303 (27%), Positives = 140/303 (46%), Gaps = 28/303 (9%)
Query: 96 RLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELN 155
RL +R +L + G P IG+++ +H+VVD+ C HH +N VE++R+GI L
Sbjct: 156 RLTNYRTTVRLTIAGKYAEPYIGIFRRSSHDVVDLCDCPIHHHLVNRVVEVVRRGISRLK 215
Query: 156 VEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESL 215
V Y +R G LRY+ + V SE + V S NE + L
Sbjct: 216 VPVYSPRNRVGLLRYLVVRV---------SEAEQKAMVVFVTARRSYNE-------IHHL 259
Query: 216 AEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPS 275
A ++ R + + V N +S NVI G L + E +G + + ++P
Sbjct: 260 ARYV------REQLPEVEVVAQNVNSSEGNVIMGPVDHFLTPKHHLTERIGEVSLMISPR 313
Query: 276 SFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
SF Q N ++ ++ ++ +V DLY G G G++L AR+ R V VE+ E
Sbjct: 314 SFLQVNRDGACLIYERVAEWARLTGRETVLDLYCGIG--GIALTLARRARRVIGVEV-VE 370
Query: 334 SQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW-LVGSDVLVVDPPRKGLDSSLVHALQ 392
+ + + +R+ + + +E L+ G DV+V++PPRKG D ++ +
Sbjct: 371 AAVEDARRNARMNGISNCVFQAGDVAEQLEELAEDGEGVDVVVLNPPRKGCDEQVLRQVA 430
Query: 393 SIG 395
++G
Sbjct: 431 ALG 433
>gi|365163416|ref|ZP_09359527.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus sp.
7_6_55CFAA_CT2]
gi|363615894|gb|EHL67350.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus sp.
7_6_55CFAA_CT2]
Length = 458
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 154/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMENPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKNAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 293 PEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 352
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 353 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|255027845|ref|ZP_05299831.1| hypothetical protein LmonocytFSL_18421 [Listeria monocytogenes FSL
J2-003]
Length = 319
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 138/301 (45%), Gaps = 35/301 (11%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R ++++ V + G YQ+ +H ++D+ C H+ + + AV+ R+ + + EPY
Sbjct: 13 YRNKSQVPVGFVNGKLTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPY 72
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEF 218
DE GD+R++ R+ + Q+ +V + E+ P +++ L E
Sbjct: 73 DEQTGKGDIRHIMT-------------RFAHTTGQLMIVLVTTKERMPFKEEIVRDLVEQ 119
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
L + S+ N NVIFG+R + L G+ + + GI +++ SF
Sbjct: 120 LE-----------LTSIVQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFY 168
Query: 279 QANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q N ++L ++ +V D Y G G I L L A+K + V VEI ++ +
Sbjct: 169 QVNPLQTEVLYQQAIDAAELTGEETVIDAYCGIGSISLCL--AKKAKHVYGVEIVDQA-I 225
Query: 337 SFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQS 393
+ + L + + A+ I SW + +DVLVVDPPRKG D L+ + +
Sbjct: 226 QDARANAELNELANTTFETGKAEEVIP--SWYKAGIVADVLVVDPPRKGCDEKLLETILA 283
Query: 394 I 394
+
Sbjct: 284 M 284
>gi|423514089|ref|ZP_17490605.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuA2-1]
gi|402443057|gb|EJV74971.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuA2-1]
Length = 458
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 87/355 (24%), Positives = 153/355 (43%), Gaps = 46/355 (12%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNECGGCQLQHLTYEGQLKAK--EKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKEAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L K +Y +V D Y G G I L L A+K + V VEI E + E
Sbjct: 293 PEQTKVLYDKTLEYAKLNGDETVIDAYCGIGSISLFL--AQKAKKVYGVEIVPE---AIE 347
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ N + + + W V +D +VVDPPRKG D +L++ +
Sbjct: 348 DANRNAALNNMTNTEFGVGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|417090805|ref|ZP_11956128.1| hypothetical protein SSUR61_0923 [Streptococcus suis R61]
gi|353533423|gb|EHC03078.1| hypothetical protein SSUR61_0923 [Streptococcus suis R61]
Length = 451
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 85/325 (26%), Positives = 157/325 (48%), Gaps = 38/325 (11%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A + VR + G +++ +H++V I H I+A V R +++L+++P
Sbjct: 125 AYRNKAAVPVRRVNGQLETGFFRKNSHDLVPIEDFYIQHKEIDALVLATRDLLRKLDLKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R + + Y +G++ + LV P ++E+L E
Sbjct: 185 YDEKEQTGLVRNIVVRRGHY-----------SGQLMLVLVTT-----RPKIFRVETLIER 228
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
L S+ + S+ N N IFG +R L G + + G + ++ SF
Sbjct: 229 LT------SQFPNLVSIVQNINDQNTNAIFGQEFRLLHGSETIVDTMLGNEFEISAPSFY 282
Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q NT + L + + A V D Y+G G IGLS A++ + V VE+ +++ L
Sbjct: 283 QVNTEMAEKLYQTAIDFAELSADDIVIDAYSGIGTIGLSF--AKQVKHVYGVEVVEKAVL 340
Query: 337 SFEKTVSRLPKSVDGNISW--HNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+K +R +D N ++ +A+++++ W+ + V+ VDPPRKGL S + A
Sbjct: 341 DSQKNAAR--NGID-NATYVCDSAESAMK--KWVADGIKPTVIFVDPPRKGLTESFIRAS 395
Query: 392 QSIGSAERKAKSLSESSSSMVKEEK 416
S+ A K +S ++++M ++ K
Sbjct: 396 SSV--APEKIVYISCNAATMARDIK 418
>gi|390456277|ref|ZP_10241805.1| RNA methyltransferase, trma family protein [Paenibacillus peoriae
KCTC 3763]
Length = 621
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 135/300 (45%), Gaps = 36/300 (12%)
Query: 100 WRCRAKLAV-RGTSTSPLIG-LYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
WR R K V G + L+G Y G+H +VD+ C R + V +++ + L +
Sbjct: 294 WRYRNKAQVPIGVTEGGLVGGFYARGSHRIVDMNTCLIQDERNDEVVARVKEIGRMLGIS 353
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
Y+E+ G LR+V + +R G++ + LV N R+ P++D
Sbjct: 354 AYNEETGRGLLRHVVVKTA-----------FRTGEMMLVLVTNGRD--IPHADA------ 394
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
W G R ++ S+ N T NVIFG+ R L G ++ +G + +++ SF
Sbjct: 395 --WI-GSIREHIPHVASICQNVNTKRTNVIFGDETRVLWGRDVIYDYIGNVQFAISARSF 451
Query: 278 GQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q N ++L K +Y +V D Y G G I L L A+ V VEI KE
Sbjct: 452 YQVNPVQTEVLYSKTVEYAGLTGKETVIDAYCGIGTISLFL--AQHADQVYGVEIVKE-- 507
Query: 336 LSFEKTVSRLPKSVDGNISWH-NADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ E S + N+ + A + P +W + +DV+VVDPPRKG D L+ +
Sbjct: 508 -AIEDARSNALLNNMRNVKFEVGASEDVIP-AWKQQGITADVIVVDPPRKGCDPRLLDTI 565
>gi|302023576|ref|ZP_07248787.1| RNA methyltransferase [Streptococcus suis 05HAS68]
Length = 452
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 145/303 (47%), Gaps = 36/303 (11%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A + VR + G +++ +H++V I H I+A V R +++L+++P
Sbjct: 125 AYRNKAAVPVRRVNGQLETGFFRKNSHDLVPIEDFYIQHKEIDALVLATRDLLRKLDLKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R + + Y +G++ + LV P ++E+L E
Sbjct: 185 YDEKEQTGLVRNIVVRRGHY-----------SGQLMLVLVTT-----RPKIFRVETLIER 228
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
L S+ + S+ N N IFG +R L G + + G + ++ SF
Sbjct: 229 LT------SQFPNLVSIVQNINDQNTNAIFGQEFRLLHGSETIADTMLGNEFEISAPSFY 282
Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q NT + L + + A V D Y+G G IGLS A++ + V VE+ + + L
Sbjct: 283 QVNTEMAEKLYQTAIDFAELSADDVVIDAYSGIGTIGLSF--AKQVKHVYGVEVVERAVL 340
Query: 337 SFEKTVSRLPKSVDGNISW--HNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+K +R +D N+++ +A+++++ W+ V V+ VDPPRKGL S + A
Sbjct: 341 DSQKNAAR--NGID-NVTYVCDSAESAMQ--KWVADGVKPTVIFVDPPRKGLTESFIKAS 395
Query: 392 QSI 394
S+
Sbjct: 396 TSV 398
>gi|451347873|ref|YP_007446504.1| hypothetical protein KSO_015680 [Bacillus amyloliquefaciens IT-45]
gi|449851631|gb|AGF28623.1| hypothetical protein KSO_015680 [Bacillus amyloliquefaciens IT-45]
Length = 466
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 86/372 (23%), Positives = 159/372 (42%), Gaps = 73/372 (19%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIV---DEATDF-FKSIGLLDFTFDSCRLYGWRC 102
CP + C GC T + R I++ + T F + + + D T + +R
Sbjct: 82 CPVYDQCGGCQLQHLAYTQQLREKRDIVIQSLERHTRFNVEEMNIKD-TIGMDNPWNYRN 140
Query: 103 RAKLAV-RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDE 161
+++ V R S S + GLY +H +V I C HP N ++R+ +++ N+ Y+E
Sbjct: 141 KSQFQVGRSQSGSIIAGLYGLDSHKIVPIKECIVQHPATNKTTGIVRRILEKHNISVYNE 200
Query: 162 DDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
+ GD+R + V + G+VQ+ LV + E PN D++ +
Sbjct: 201 RTKKGDVRTIVTRVG-----------FETGEVQVVLV--TAKETLPNKDEIVKAIQ---- 243
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
+R + S+ N + +VIFG++ + L G E +G + L+ +F Q N
Sbjct: 244 -----NRLPEVKSIIQNVNGARTSVIFGDKTKALAGSHAIQEVLGDVSFELSARAFFQLN 298
Query: 282 ----TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
+ +D + + Q + V D Y G G IG+ +++ K ++ +++ KES
Sbjct: 299 PEQTVKLYDEVKQAAQ--LTGKEKVVDAYCGVGTIGMWVSSGAK--EIRGMDVIKESIDD 354
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPPRKG 382
+K N H N+ +++ G+ DV++VDPPR G
Sbjct: 355 AKK-----------NAKKHGIKNA----AYVTGTAEHWLPKWTKEGFRPDVVIVDPPRTG 399
Query: 383 LDSSLVHALQSI 394
D + + ++ +
Sbjct: 400 CDRTFLDTIKKV 411
>gi|167772924|ref|ZP_02444977.1| hypothetical protein ANACOL_04312 [Anaerotruncus colihominis DSM
17241]
gi|167664857|gb|EDS08987.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerotruncus
colihominis DSM 17241]
Length = 472
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 87/325 (26%), Positives = 139/325 (42%), Gaps = 42/325 (12%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A+ VR G + TH V+D CK P +E + + +V
Sbjct: 143 GYRNKAQYPVRMQKGGLCAGFFAPRTHEVIDCHTCKLQPPVFGELLEAVLSYMHTYHVSA 202
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE G +R+V + +R+G++ + LV N + PN + L L
Sbjct: 203 YDESLGAGLIRHVYL-----------RRGHRSGQIMVCLVVNGTH--LPNENALVDL--L 247
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
L R G I S+ N NVI G R L G+ + + G+ L+ SF
Sbjct: 248 LSRCG-------EIVSILLNVNERNTNVIIGEHSRVLYGKPAISDVLCGVRFELSAQSFY 300
Query: 279 QANTRAFDILLRKLQKYVPYGASVT--DLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q N+ ++L ++ + T DLY GAG IGLSLA CR V VE+ ++
Sbjct: 301 QVNSPGAELLYGVAAEFAALTGTETLLDLYCGAGTIGLSLA--HLCRQVIGVEVVPQAVE 358
Query: 337 SFEKTV-------SRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVH 389
+ +R + G + A + P DV+V+DPPRKG ++
Sbjct: 359 NAVANAARNGIKNARFFCADAGQAAARLAREGVRP-------DVIVLDPPRKGCAPEVLD 411
Query: 390 ALQSIGSAERKAKSLSESSSSMVKE 414
A+ ++ A R+ +S S++M ++
Sbjct: 412 AVAAM--APRRVVMVSCDSATMARD 434
>gi|423556686|ref|ZP_17532989.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus MC67]
gi|401194604|gb|EJR01576.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus MC67]
Length = 458
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNECGGCQLQHLTYEGQLKAK--EKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ ++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKHICEKHGISAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKEAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 293 PEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 352
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 353 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|399054535|ref|ZP_10742986.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Brevibacillus sp.
CF112]
gi|398047686|gb|EJL40198.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Brevibacillus sp.
CF112]
Length = 481
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 99/359 (27%), Positives = 153/359 (42%), Gaps = 57/359 (15%)
Query: 54 CPHFQSCSGCT-----HEFNL-HRPIIVDEATDFFKSIGLLDFTFDSCRLYG-------- 99
CP + C GC+ +E L H+ IV D + IG +
Sbjct: 93 CPLYDRCGGCSLQHLAYEEQLRHKQQIV---RDNLRRIGGFQVEGEGAITVHPTLGMSDP 149
Query: 100 WRCRAKLAV-RGTSTSPLIG-LYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
WR R K V G L+G Y E +H+++D+ C H + + V +++ L ++
Sbjct: 150 WRYRNKAQVPIGEENGALVGGFYAEKSHSIIDMNECLIQHQKNDEGVATVKRAAAALGIK 209
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLA 216
PYDE TG LR+V + V ++ +V + E P DKL E++
Sbjct: 210 PYDEVRGTGLLRHVVVKVGVKTG-------------EVMVVLVTTAEAIPQRDKLVEAI- 255
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
R+ + S+ N NVIFG + L G ++ +G I +++ S
Sbjct: 256 ---------RTEVAGVTSIVQNINPDKTNVIFGKKTVTLWGSDVIYDYIGPIKFAISARS 306
Query: 277 FGQANTRAFDILLRKLQKYVPYGA----SVTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
F Q N ++L K +Y GA +V D Y G G I L L A+K + V VEI
Sbjct: 307 FYQVNPAQTEVLYNKTLEYA--GATGTETVIDAYCGIGTISLFL--AQKSKHVYGVEIVP 362
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLV 388
E+ + +RL + A+ I +W + +DV+VVDPPRKG D +L+
Sbjct: 363 EAIADANRN-ARLNGVKNATFEAGPAEVVIP--AWKEQGIRADVIVVDPPRKGCDEALL 418
>gi|257084323|ref|ZP_05578684.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis
Fly1]
gi|256992353|gb|EEU79655.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis
Fly1]
Length = 456
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 87/361 (24%), Positives = 150/361 (41%), Gaps = 58/361 (16%)
Query: 54 CPHFQSCSGCTHEFNLHRPII------VDEATDFFKSIGLLDF----TFDSCRLYGWRCR 103
CP +++C GC + ++ + + +A + FK ++ T + +R +
Sbjct: 76 CPVYETCGGCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMENPWNYRNK 135
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A+ +R GLYQ +H +V I +C P + L + + + YDE
Sbjct: 136 AQFQLRQIDGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERK 195
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-----ESLAEF 218
+G R + + V + G+VQ+ V+ ++++K P +K+ E L E
Sbjct: 196 NSGIFRTLMVRVGI-----------QTGEVQV--VFITQSQKFPQKEKMVRAINEQLPEV 242
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ S+ N Q +++ G+ HL G+ E++ + L+P +F
Sbjct: 243 V--------------SIMQNVQNKKTSLVMGDDTLHLWGKESIEEHINDVVFDLSPRAFF 288
Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAA-ARKCRSVKCVEINKESQ 335
Q N ++L + K + S V D Y G G IGLSLA A + R + + +
Sbjct: 289 QLNPEQTEVLYNEGIKALDLQPSETVVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDD- 347
Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWL---VGSDVLVVDPPRKGLDSSLVHA 390
+R G ++ H A + E L W D +VVDPPR GLD L+ A
Sbjct: 348 -------ARFNAKRLGVMNTHYAVGTAEDLLPKWFKEGFKPDAIVVDPPRTGLDRKLLTA 400
Query: 391 L 391
L
Sbjct: 401 L 401
>gi|229095036|ref|ZP_04226032.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-29]
gi|229113989|ref|ZP_04243415.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-3]
gi|423381650|ref|ZP_17358933.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG1O-2]
gi|423444502|ref|ZP_17421407.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG4X2-1]
gi|423450329|ref|ZP_17427207.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG5O-1]
gi|423467765|ref|ZP_17444533.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG6O-1]
gi|423537167|ref|ZP_17513585.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuB2-9]
gi|423542892|ref|ZP_17519281.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuB4-10]
gi|423543798|ref|ZP_17520156.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuB5-5]
gi|423626475|ref|ZP_17602252.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD148]
gi|228669448|gb|EEL24864.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-3]
gi|228688366|gb|EEL42248.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-29]
gi|401126117|gb|EJQ33871.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG5O-1]
gi|401167726|gb|EJQ75006.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuB4-10]
gi|401185927|gb|EJQ93016.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuB5-5]
gi|401252236|gb|EJR58498.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD148]
gi|401629181|gb|EJS47007.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG1O-2]
gi|402410780|gb|EJV43174.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG4X2-1]
gi|402412898|gb|EJV45250.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG6O-1]
gi|402460134|gb|EJV91860.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuB2-9]
Length = 458
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C +A ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDALIQEVKRICEKHGISAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG+ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNTKRTNVIFGDTTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 293 PEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 352
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 353 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|421488415|ref|ZP_15935803.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
SK304]
gi|400367632|gb|EJP20647.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
SK304]
Length = 452
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 152/322 (47%), Gaps = 34/322 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGILETGFFRKNSHDLMPLKDFFIQDPVIDEVVVALRDLLRRYDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + L P +++ L E L
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVILATTR-----PKVFRVDQLIEQL 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFGN WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGNDWRTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT+ + L + + V D Y+G G IGLS+ A+ + V VEI E+ +
Sbjct: 284 VNTQMAEKLYQTAIDFAELRKDDVVIDAYSGIGTIGLSV--AKYVKDVYGVEIIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K +RL + + A+N+++ WL + V++VDPPRKGL S + A
Sbjct: 342 SKKN-ARLNNISNAHYVCDTAENAMK--KWLKEGIHPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GSAERKAKSLSESSSSMVKEEK 416
G A+R A +S + ++M ++ K
Sbjct: 399 G-ADRIA-YISCNVATMARDIK 418
>gi|423393229|ref|ZP_17370455.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG1X1-3]
gi|401631751|gb|EJS49543.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG1X1-3]
Length = 458
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNECGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C +A ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDALIQEVKRICEKHGISAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG+ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNTKRTNVIFGDTTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 293 PEQTKVLYDKTLEYAQLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 352
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 353 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|417793352|ref|ZP_12440630.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
SK255]
gi|334273080|gb|EGL91431.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
SK255]
Length = 454
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 152/322 (47%), Gaps = 34/322 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ V LR ++ +++PY
Sbjct: 129 YRNKAQVPVRRVNGILETGFFRKNSHDLMPLKDFFIQDPVIDEVVVALRDLLRRYDLKPY 188
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + L P +++ L E L
Sbjct: 189 DEKEQSGLIR-----------NLVVRRGHYSGQIMVILATTR-----PKVFRVDQLIEQL 232
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFGN WR L G+ + + G D +A +F Q
Sbjct: 233 IKQFPE------IVSVMQNINDQNTNAIFGNDWRTLYGQDYITDQMLGNDFQIAGPAFYQ 286
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT+ + L + + V D Y+G G IGLS+ A+ + V VEI E+ +
Sbjct: 287 VNTQMAEKLYQTAIDFAELRKDDVVIDAYSGIGTIGLSV--AKYVKDVYGVEIIPEAVEN 344
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K +RL + + A+N+++ WL + V++VDPPRKGL S + A
Sbjct: 345 SKKN-ARLNNISNAHYVCDTAENAMK--KWLKEGIHPTVILVDPPRKGLTESFIKASAQT 401
Query: 395 GSAERKAKSLSESSSSMVKEEK 416
G A+R A +S + ++M ++ K
Sbjct: 402 G-ADRIA-YISCNVATMARDIK 421
>gi|417698556|ref|ZP_12347728.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA41317]
gi|419505960|ref|ZP_14045621.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA49194]
gi|332200601|gb|EGJ14673.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA41317]
gi|379607874|gb|EHZ72620.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA49194]
Length = 451
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 140/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +HN++ + P I+ V LR I+ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLIRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVVLVTTR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + + D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKKDDVIIDAYSGIGTIGLSV--AKHVKEVYGVELIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K ++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 342 SKKN-AQLNNISNAHYVCDTAENAMK--NWLKDGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|385260386|ref|ZP_10038534.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
SK140]
gi|385191650|gb|EIF39063.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
SK140]
Length = 451
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 75/296 (25%), Positives = 137/296 (46%), Gaps = 32/296 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ + LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFYIQDPVIDQVIVALRDLLRRYDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L Y +G++ + LV P ++E + E L
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGYHSGQIMVILVTTR-----PKVFRVEQVIEQL 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D ++ +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQISGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + A V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELRAEDVVIDAYSGIGTIGLSV--AKHVKEVYGVEVISEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHA 390
+K + L + + A+N+++ +WL + ++VDPPRKGL S + A
Sbjct: 342 SQKNAA-LNNITNAHYVCDTAENAMK--NWLKEGIQPTAILVDPPRKGLTESFIKA 394
>gi|423473333|ref|ZP_17450075.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG6O-2]
gi|402426106|gb|EJV58244.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG6O-2]
Length = 458
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 154/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNECGGCQLQHLTYEGQLKAK--EKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKNGISAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKEAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 293 PEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 352
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 353 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|423433988|ref|ZP_17410969.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG4X12-1]
gi|401127447|gb|EJQ35170.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG4X12-1]
Length = 458
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 83/353 (23%), Positives = 152/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMENPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V RY +I LV+ +R + PN + + E +A
Sbjct: 196 RNKGTLRHVMT-------------RYGQVTGEIMLVFITRTAELPNKNAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 293 PEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 352
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 353 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|160944108|ref|ZP_02091338.1| hypothetical protein FAEPRAM212_01610 [Faecalibacterium prausnitzii
M21/2]
gi|158444784|gb|EDP21788.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium
prausnitzii M21/2]
Length = 458
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 87/353 (24%), Positives = 150/353 (42%), Gaps = 37/353 (10%)
Query: 52 LQCPHFQSCSGCTH---EFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRA 104
+ CP C GC+ ++ + D F+ IG L+ S + +R +
Sbjct: 72 VDCPVAGPCGGCSLRHLDYAAELRAKQESVLDAFRRIGGLEVPVLDILPSPDVDRYRNKV 131
Query: 105 KLAVR-GTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
+ V + P IG Y TH +V P CK +N L + + PYDE
Sbjct: 132 QFPVGIDKNGVPCIGFYAGRTHRIVPCPDCKLQPSVLNEIGNALCAFFAQQVIRPYDEQS 191
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNG 223
G +R++ + ++ G++ + LV K P++++L +
Sbjct: 192 GKGLVRHIFLRRGAHS-----------GQIMVCLVCT--RAKLPHAEQLCT--------- 229
Query: 224 GSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTR 283
R + I ++ N NVI G+ L G + + G+ + L P SF Q NT
Sbjct: 230 ALRGQFPAISTILLNVNAKNTNVILGSENHILYGPGYIEDTLCGVPVRLGPLSFYQVNTL 289
Query: 284 AFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
A + L +Y ++ DLY G G IGLS+A +CR + VEI E+ S +
Sbjct: 290 AAERLYGVAAQYAQLTPDDTLLDLYCGMGTIGLSMAG--QCRELIGVEIVPEAIESAKAN 347
Query: 342 VSRLPKSVDGNISWHNAD---NSIEPLSWLVGSDVLVVDPPRKGLDSSLVHAL 391
+R+ ++V + AD + + + + D++++DPPRKG D + + A+
Sbjct: 348 AARMGEAVAAKSRFFCADAGQAATQLAAEGLHPDIVMLDPPRKGCDEATLSAV 400
>gi|157691537|ref|YP_001485999.1| tRNA (uracil-5-)-methyltransferase [Bacillus pumilus SAFR-032]
gi|157680295|gb|ABV61439.1| tRNA (uracil-5-)-methyltransferase [Bacillus pumilus SAFR-032]
Length = 461
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 87/376 (23%), Positives = 154/376 (40%), Gaps = 81/376 (21%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVD----------EATDFFKSIGLLDFTFDSCR 96
CP ++ C GC + R I++ E D +IG+ D
Sbjct: 80 CPVYEECGGCQLQHLAYEQQLREKRDIVIQSMERHTKLSVEKLDIRPTIGMED------- 132
Query: 97 LYGWRCRAKLAV-RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELN 155
+ +R +++ V R S + GLY +H +V I C HP+ N ++R+ +++
Sbjct: 133 PWHYRNKSQFQVGRSHSGDIIAGLYGLNSHKLVPIKECIVQHPKTNKTTGVVRKILEKFG 192
Query: 156 VEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESL 215
V Y+E R GD+R + + V + G+VQ+ LV + P K + +
Sbjct: 193 VSVYNERTRKGDVRSIVVRVG-----------FETGEVQVVLVTS-----KPEFPKKKEI 236
Query: 216 AEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPS 275
A+ + + R + S+ N +VIFG++ HL G E +G + L+
Sbjct: 237 ADAIQK------RLPEVTSIMHNINGEKTSVIFGHKTSHLAGNMVIQEFLGDVSFELSAR 290
Query: 276 SFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
+F Q N + L + +K V D Y G G IG+ L+ + V+ +++ KE
Sbjct: 291 AFFQLNPKQTLKLYDEAKKAAKLTGKEKVVDAYCGVGTIGMWLSDG--AKEVRGMDVIKE 348
Query: 334 SQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDP 378
S +K N H N+ +++ G+ DV+VVDP
Sbjct: 349 SIDDAKK-----------NAKKHGMKNA----TYVTGTAEHWLPKWVKEGFRPDVIVVDP 393
Query: 379 PRKGLDSSLVHALQSI 394
PR G + + + ++ +
Sbjct: 394 PRTGCERTFLDTVKQV 409
>gi|377810357|ref|YP_005005578.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pediococcus claussenii
ATCC BAA-344]
gi|361057098|gb|AEV95902.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pediococcus claussenii
ATCC BAA-344]
Length = 468
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 141/309 (45%), Gaps = 54/309 (17%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A+ VR L G+Y EG+H++VD+P HP + + + + +V
Sbjct: 143 GYRNKAQFQVRRLDGKVLAGMYTEGSHDLVDLPEVSVQHPLTMQIMRFIVDLLDKYSVSV 202
Query: 159 YDEDDRTGDLR--YVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESL 215
Y+E GD++ V++AV T + Q+ V NS K P D++ E L
Sbjct: 203 YNERKNIGDVKTIIVRVAVET-------------NQAQVVFVTNS--TKLPYRDEMVEDL 247
Query: 216 AEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPS 275
+++ I S+ N + N++I+G+ +++ G++ E + G+ L+
Sbjct: 248 ----------QAKFPEIKSIMQNINSGRNSLIWGDNTQNIAGDSFITEKMDGLSFKLSAR 297
Query: 276 SFGQANTRAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
+F Q N L + +K + ++ D Y+G G IGLSL A+K + V+ ++
Sbjct: 298 AFFQLNPYQTVKLYNEARKALELSDNDNLVDAYSGVGTIGLSL--AKKAKEVRGMD---- 351
Query: 334 SQLSFEKTVSRLPKSVDGNISWHNADN------SIEPL--SWL---VGSDVLVVDPPRKG 382
T++ + + N + DN + E L WL D LVVDPPR G
Sbjct: 352 -------TIAEAVEDANENAKLNGIDNAHYETGAAEKLLPKWLQEGFKPDSLVVDPPRVG 404
Query: 383 LDSSLVHAL 391
L+ L+ A+
Sbjct: 405 LEGRLIQAI 413
>gi|295105028|emb|CBL02572.1| 23S rRNA m(5)U-1939 methyltransferase [Faecalibacterium prausnitzii
SL3/3]
Length = 457
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 87/353 (24%), Positives = 150/353 (42%), Gaps = 37/353 (10%)
Query: 52 LQCPHFQSCSGCTH---EFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRA 104
+ CP C GC+ ++ + D F+ IG L+ S + +R +
Sbjct: 72 VDCPVAGPCGGCSLRHLDYAAELRAKQESVLDAFRRIGGLEVPVLDILPSPDVDRYRNKV 131
Query: 105 KLAVR-GTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
+ V + P IG Y TH +V P CK +N L + + PYDE
Sbjct: 132 QFPVGIDKNGVPCIGFYAGRTHRIVPCPDCKLQPSVLNEIGNALCAFFAQQVIRPYDEQS 191
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNG 223
G +R++ + ++ G++ + LV K P++++L +
Sbjct: 192 GKGLVRHIFLRRGAHS-----------GQIMVCLVCT--RAKLPHAEQLCT--------- 229
Query: 224 GSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTR 283
R + I ++ N NVI G+ L G + + G+ + L P SF Q NT
Sbjct: 230 ALRGQFPAISTILLNVNAKNTNVILGSENHILYGPGYIEDTLCGVPVRLGPLSFYQVNTL 289
Query: 284 AFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
A + L +Y ++ DLY G G IGLS+A +CR + VEI E+ S +
Sbjct: 290 AAERLYGVAAQYAQLTPDDTLLDLYCGMGTIGLSMAG--QCRELIGVEIVPEAIESAKAN 347
Query: 342 VSRLPKSVDGNISWHNAD---NSIEPLSWLVGSDVLVVDPPRKGLDSSLVHAL 391
+R+ ++V + AD + + + + D++++DPPRKG D + + A+
Sbjct: 348 AARMGEAVAAKSRFFCADAGQAATQLAAEGLHPDIVMLDPPRKGCDEATLSAV 400
>gi|384264377|ref|YP_005420084.1| hypothetical protein BANAU_0746 [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387897307|ref|YP_006327603.1| putative RNA methyltransferase [Bacillus amyloliquefaciens Y2]
gi|380497730|emb|CCG48768.1| hypothetical protein BANAU_0746 [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387171417|gb|AFJ60878.1| putative RNA methyltransferase [Bacillus amyloliquefaciens Y2]
Length = 466
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 87/372 (23%), Positives = 158/372 (42%), Gaps = 73/372 (19%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIV---DEATDF-FKSIGLLDFTFDSCRLYGWRC 102
CP + C GC T + R I++ + T F + + + D T + +R
Sbjct: 82 CPVYDQCGGCQLQHLAYTQQLREKRDIVIQSLERHTRFNVEEMNIKD-TIGMDNPWNYRN 140
Query: 103 RAKLAV-RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDE 161
+++ V R S S + GLY +H +V I C HP N ++R+ +++ NV Y+E
Sbjct: 141 KSQFQVGRSQSGSIIAGLYGLDSHKIVPIKECIVQHPATNKTTGIVRRILEKHNVSVYNE 200
Query: 162 DDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
+ GD+R + V + G+VQ+ LV + E PN D++ +
Sbjct: 201 RTKKGDVRTIVTRVG-----------FETGEVQVVLV--TAKETLPNKDEIVKAIQ---- 243
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
+R + S+ N + +VIFG++ + L G E +G + L+ +F Q N
Sbjct: 244 -----NRLPEVKSIIQNINGARTSVIFGDKTKALAGSHAIQEVLGDVSFELSARAFFQLN 298
Query: 282 ----TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
+ +D + + Q + V D Y G G IG+ ++ K ++ +++ KES
Sbjct: 299 PEQTVKLYDEVKQAAQ--LTGKEKVVDAYCGVGTIGMWVSNGAK--EIRGMDVIKESIDD 354
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPPRKG 382
+K N H N+ +++ G+ DV++VDPPR G
Sbjct: 355 AKK-----------NAKKHGIKNA----AYVTGTAEHWLPKWTKEGFRPDVVIVDPPRTG 399
Query: 383 LDSSLVHALQSI 394
D + + ++ +
Sbjct: 400 CDRTFLDTIKKV 411
>gi|293570978|ref|ZP_06682021.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E980]
gi|431738207|ref|ZP_19527152.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1972]
gi|291608904|gb|EFF38183.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E980]
gi|430597645|gb|ELB35428.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1972]
Length = 460
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 81/361 (22%), Positives = 155/361 (42%), Gaps = 56/361 (15%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRC 102
CP + C GC + + + +++ +A + FK G + T + +R
Sbjct: 76 CPVYYECGGCQLQHLAYQAQLDFKKDLLL-QALEKFKPAGFRSYQLLPTIGMDEPWHYRN 134
Query: 103 RAKLAVRGTSTSPLI--GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYD 160
+A+ +R + I GLY+ +H +V I C PR + + Q + + + YD
Sbjct: 135 KAQFQLRKNKQTQKIEAGLYEANSHQLVPITDCLVQEPRTQKVMNTVVQLLNKFDAPIYD 194
Query: 161 EDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLW 220
E +G R + + + + G++Q+ V+ +R++K P + + + E
Sbjct: 195 ERTNSGIFRTIMVRIGV-----------KTGELQV--VFITRSKKFPQKNAM--IREI-- 237
Query: 221 RNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQA 280
R + S+ N Q +++ G+ HL G+ E + + L+P +F Q
Sbjct: 238 -----NERLPAVVSIMQNVQAQKTSLVMGDETIHLWGKEAIEEQINEVTFDLSPRAFFQL 292
Query: 281 NTRAFDILLRKLQKY--VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSF 338
N + ++L + K V ++ D Y G G IGLS+ A++ + V+ ++ ++
Sbjct: 293 NPQQTELLYGEGIKALDVQPNETIVDAYCGVGTIGLSV--AKQAKEVRGMDTVPQAIADA 350
Query: 339 EKTVSRLPKSVDGNISWHNADNSIEPL-----SWL---VGSDVLVVDPPRKGLDSSLVHA 390
+K RL +HN + WL D ++VDPPR GLD++L+ +
Sbjct: 351 KKNAERL--------GYHNTRYEVGTAEQVLPKWLNEGFQPDGIIVDPPRTGLDNALIQS 402
Query: 391 L 391
L
Sbjct: 403 L 403
>gi|419508095|ref|ZP_14047748.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA49542]
gi|379611813|gb|EHZ76535.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA49542]
Length = 543
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 139/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +HN++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVVLVTTR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGLSV--AKHVKEVYGVELIPEA-VE 340
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
K ++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 341 NSKKNAQLNNISNAHYVCDTAENAMK--NWLKDGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|333395792|ref|ZP_08477609.1| RNA methyltransferase [Lactobacillus coryniformis subsp.
coryniformis KCTC 3167]
Length = 465
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 90/340 (26%), Positives = 144/340 (42%), Gaps = 62/340 (18%)
Query: 74 IVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVD 129
++ ++ + FK G + T Y +R +A+ VR + GLYQE +H +VD
Sbjct: 107 VIRQSLEKFKPRGYQHYKLLPTIGMAEPYEYRNKAQFQVRELNGHVAAGLYQEHSHQLVD 166
Query: 130 IPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYR 189
+ P + + ++EL V Y+E+ +G ++ +L E +
Sbjct: 167 LKTFSTQRPATMQVIRYVVALLEELKVPIYNEEQNSGIVK-----------TLVVRESFS 215
Query: 190 NGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFG 249
G +Q+T + NSR KL E L R ++ I S+ N ++I+G
Sbjct: 216 TGHLQLTFITNSR--------KLPHKRELLSR---IHTKMPQITSIMQNLNQGRTSLIWG 264
Query: 250 NRWRHLLGETDFWENVGGIDISLAPSSFGQAN---TRAFDILLRKLQKYVPYGASVTDLY 306
+L G+ E + G+ L+ +F Q N T L R+ + P+ S+ D Y
Sbjct: 265 EETFNLAGDDYITETLSGLTFKLSARAFFQLNPAQTAKMYALAREALQLAPH-ESLVDAY 323
Query: 307 AGAGVIGLSLA-AARKCRSVKCVEINKESQLSFEKTVSRLPKSV---DGNISWHNADNS- 361
G G IGLSLA A + R + V P ++ N + ++ DN+
Sbjct: 324 CGVGTIGLSLADTASEVRGMDIV-----------------PAAIADAQENANLNHIDNAK 366
Query: 362 -----IEPL--SWLVGS---DVLVVDPPRKGLDSSLVHAL 391
E L WL D LVVDPPR GLD +L+HA+
Sbjct: 367 YEVGKAEELLPQWLAAGFAPDALVVDPPRTGLDQALLHAI 406
>gi|319946766|ref|ZP_08021000.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus australis
ATCC 700641]
gi|417920007|ref|ZP_12563527.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
australis ATCC 700641]
gi|319746814|gb|EFV99073.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus australis
ATCC 700641]
gi|342831296|gb|EGU65614.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
australis ATCC 700641]
Length = 452
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 138/302 (45%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ I P I+ V LR I+ +++PY
Sbjct: 126 YRNKAQVPVRRVNGQVETGFFRKNSHDLMPIEDFYIQDPVIDQVVLALRDLIRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E L
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHHSGEIMVILVTTR-----PKIFRVDQLIEQL 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D ++ +F Q
Sbjct: 230 IKQFPV------IKSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQISGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFADLKEEDVVIDAYSGIGTIGLSV--AKHVKEVYGVEVIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K + L + + A+N+++ +WL + ++VDPPRKGL S + A
Sbjct: 342 SQKNAA-LNNITNAHYVCDTAENAMK--NWLKEGIQPTAILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|308067596|ref|YP_003869201.1| RNA methyltransferase [Paenibacillus polymyxa E681]
gi|305856875|gb|ADM68663.1| Hypothetical RNA methyltransferase [Paenibacillus polymyxa E681]
Length = 534
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 87/302 (28%), Positives = 137/302 (45%), Gaps = 40/302 (13%)
Query: 100 WRCRAKLAV-RGTSTSPLIG-LYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
WR R K V G + L+G Y G+H +VD+ C R + V +++ + L +
Sbjct: 203 WRYRNKAQVPIGVTEGGLVGGFYARGSHRIVDMNTCLIQDERNDEVVARVKEIGRMLGIS 262
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
Y+E+ G LR+V + +R G++ + LV N R+ P++D
Sbjct: 263 AYNEETGRGLLRHVVVKTA-----------FRTGEMMLVLVTNGRD--IPHADA------ 303
Query: 218 FLWRNGGSRSREH--YIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPS 275
W S REH ++ S+ N T NVIFG+ R L G ++ +G + +++
Sbjct: 304 --WI---SSIREHIPHVASICQNVNTKRTNVIFGDETRVLWGRDVIYDYIGNVQFAISAR 358
Query: 276 SFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
SF Q N ++L K +Y +V D Y G G I L L A+ V VEI KE
Sbjct: 359 SFYQVNPVQTEVLYGKTVEYAGLTGKETVIDAYCGIGTISLFL--AQHADQVYGVEIVKE 416
Query: 334 SQLSFEKTVSRLPKSVDGNISWH-NADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVH 389
+ + S + N+ + A + P +W + +DV+VVDPPRKG D L+
Sbjct: 417 ---AIDDARSNALLNEMRNVKFEVGASEDVIP-AWKEQGITADVIVVDPPRKGCDPRLLG 472
Query: 390 AL 391
+
Sbjct: 473 TI 474
>gi|419495426|ref|ZP_14035144.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47461]
gi|421303240|ref|ZP_15753904.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA17484]
gi|379595508|gb|EHZ60316.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47461]
gi|395901862|gb|EJH12798.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA17484]
Length = 543
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 139/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +HN++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVVLVTTR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGLSV--AKHVKEVYGVELIPEA-VE 340
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
K ++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 341 NSKKNAQLNNISNAHYVCDTAENAMK--NWLKDGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|336393605|ref|ZP_08575004.1| RNA methyltransferase [Lactobacillus coryniformis subsp. torquens
KCTC 3535]
Length = 465
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 90/340 (26%), Positives = 144/340 (42%), Gaps = 62/340 (18%)
Query: 74 IVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVD 129
++ ++ + FK G + T Y +R +A+ VR + GLYQE +H +VD
Sbjct: 107 VIRQSLEKFKPRGYQHYKLRPTIGMAEPYEYRDKAQFQVRELNGHVAAGLYQEHSHQLVD 166
Query: 130 IPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYR 189
+ P + + ++EL V Y+E+ +G ++ +L E +
Sbjct: 167 LKTFSTQRPATMQVIRYVVALLEELKVPIYNEEQNSGIVK-----------TLVVRESFS 215
Query: 190 NGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFG 249
G +Q+T + NSR KL E L R ++ I S+ N ++I+G
Sbjct: 216 TGHLQLTFITNSR--------KLPHKRELLSR---IHTKMPQITSIMQNLNQGRTSLIWG 264
Query: 250 NRWRHLLGETDFWENVGGIDISLAPSSFGQAN---TRAFDILLRKLQKYVPYGASVTDLY 306
+L G+ E + G+ L+ +F Q N T L R+ + P+ S+ D Y
Sbjct: 265 EETFNLAGDDYITETLSGLTFKLSARAFFQLNPAQTAKMYALAREALQLAPH-ESLVDAY 323
Query: 307 AGAGVIGLSLA-AARKCRSVKCVEINKESQLSFEKTVSRLPKSV---DGNISWHNADNS- 361
G G IGLSLA A + R + V P ++ N + ++ DN+
Sbjct: 324 CGVGTIGLSLADTASEVRGMDIV-----------------PAAIADAQENTNLNHIDNAK 366
Query: 362 -----IEPL--SWLVGS---DVLVVDPPRKGLDSSLVHAL 391
E L WL D LVVDPPR GLD +L+HA+
Sbjct: 367 YEVGKAEELLPQWLAAGFAPDALVVDPPRTGLDQALLHAI 406
>gi|440781312|ref|ZP_20959654.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
pasteurianum DSM 525]
gi|440220917|gb|ELP60123.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
pasteurianum DSM 525]
Length = 499
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 81/314 (25%), Positives = 144/314 (45%), Gaps = 56/314 (17%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
Y +R + +L V L+G Y +HN++D+ C H + AVE +++ + + N+
Sbjct: 170 YRYRNKVQLPVGNIKGKFLVGFYSPRSHNIIDMEECHIQHIAGDKAVEAMKKWLSKYNIS 229
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
YDE TG +R++ + + ++ G+V I +V + +K P E E
Sbjct: 230 VYDEKTGTGLVRHIMV-----------RKAFKTGEVMIVIV--TSQDKLPYK---EEFVE 273
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
+ +N + S+ N ++ +NVI G + L G+ +++G +++P SF
Sbjct: 274 LMQKNIEG------LKSIVQNINSNNSNVILGKTCKTLWGKDTIVDSIGEFKFNISPLSF 327
Query: 278 GQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q N +IL K +Y V D+Y G G I L L ++K + V VEI
Sbjct: 328 FQVNPVQTEILYNKALEYADLKGDEIVFDVYCGTGTISLFL--SQKAKKVYGVEI----- 380
Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVG---------------SDVLVVDPPR 380
+P++++ N + N+I + ++VG +DV+VVDPPR
Sbjct: 381 ---------IPQAIE-NAKINAKQNNIYNVEFIVGESEKVIPEIINTGVKADVVVVDPPR 430
Query: 381 KGLDSSLVHALQSI 394
KG + SL+ A+ +
Sbjct: 431 KGCERSLLEAIAKM 444
>gi|289167962|ref|YP_003446231.1| hypothetical protein smi_1119 [Streptococcus mitis B6]
gi|288907529|emb|CBJ22366.1| conserved hypothetical protein [Streptococcus mitis B6]
Length = 452
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 138/302 (45%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ V LR + +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFFIQDPVIDEVVVALRDLFRRYDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE ++ G +R +L + +G++ + LV P ++E L E L
Sbjct: 186 DEKEQAGLIR-----------NLVVRRGHYSGQIMVILVTTR-----PKVFRVEQLIEQL 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDFITDQMLGNDYQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + A V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKADDVVIDAYSGIGTIGLSV--AKHVKEVYGVEVIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
K ++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 342 SNKN-AQLNNISNAHYVCDTAENAMK--NWLKDGIQPTVILVDPPRKGLTESFIKASSQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|148984983|ref|ZP_01818226.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP3-BS71]
gi|387757405|ref|YP_006064384.1| putative RNA methyltransferase [Streptococcus pneumoniae OXC141]
gi|418232095|ref|ZP_12858682.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA07228]
gi|418236535|ref|ZP_12863103.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA19690]
gi|419479854|ref|ZP_14019661.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA19101]
gi|419482048|ref|ZP_14021841.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA40563]
gi|419499548|ref|ZP_14039245.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47597]
gi|419520954|ref|ZP_14060550.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA05245]
gi|421227198|ref|ZP_15683906.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2072047]
gi|147922681|gb|EDK73798.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP3-BS71]
gi|301799994|emb|CBW32584.1| putative RNA methyltransferase [Streptococcus pneumoniae OXC141]
gi|353886822|gb|EHE66602.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA07228]
gi|353892767|gb|EHE72515.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA19690]
gi|379539968|gb|EHZ05145.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA05245]
gi|379571020|gb|EHZ35979.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA19101]
gi|379580922|gb|EHZ45811.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA40563]
gi|379601318|gb|EHZ66093.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47597]
gi|395596025|gb|EJG56249.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2072047]
gi|429316030|emb|CCP35683.1| putative RNA methyltransferase [Streptococcus pneumoniae SPN034156]
gi|429319374|emb|CCP32636.1| putative RNA methyltransferase [Streptococcus pneumoniae SPN034183]
gi|429321190|emb|CCP34610.1| putative RNA methyltransferase [Streptococcus pneumoniae SPN994039]
gi|429323010|emb|CCP30651.1| putative RNA methyltransferase [Streptococcus pneumoniae SPN994038]
Length = 543
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 139/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +HN++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVVLVTTR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGLSV--AKHVKEVYGVELIPEA-VE 340
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
K ++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 341 NSKKNAQLNNISNAHYVCDTAENAMK--NWLKDGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|423507954|ref|ZP_17484520.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus HD73]
gi|402442380|gb|EJV74309.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus HD73]
Length = 459
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 293 PEQTKVLYDKTLEYAKLSGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 352
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 353 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|227512910|ref|ZP_03942959.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
buchneri ATCC 11577]
gi|227083910|gb|EEI19222.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
buchneri ATCC 11577]
Length = 456
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 137/310 (44%), Gaps = 54/310 (17%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
Y +R +A++ VR + G Y++ +H++V I P I+ AV ++R +++ +
Sbjct: 127 YHYRNKAQIPVRMLNGRLQTGFYRKHSHDLVPIEDFYIQDPEIDKAVVIVRDILRKFQIT 186
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
PYDE G +R + + Y+ + I L+ S+ KL S AE
Sbjct: 187 PYDEQTHRGVIRNIMVRRGHYSHEM-----------MIVLITKSK--------KLPSEAE 227
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
+ + S+ N N + GN+ + L G+ + + G+D ++P+SF
Sbjct: 228 IISETVNQLPE---VKSIVQNINPKNTNSLMGNQNKVLWGKGTITDQLMGLDFEISPNSF 284
Query: 278 GQAN----TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLA-AARKCRSVKCV---- 328
Q N + + + ++K Q + V D Y G G I LSLA +K V+ V
Sbjct: 285 YQVNPIQTEKLYKLAIQKAQ--LNKDDIVIDAYCGIGTISLSLAKVVKKVYGVEIVPEAI 342
Query: 329 -------EINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRK 381
INK S F V++ + + W A ++P DV+VVDPPRK
Sbjct: 343 EDAKRNAHINKISNCKF--VVAKAEEQLG---KWQKA--GLKP-------DVIVVDPPRK 388
Query: 382 GLDSSLVHAL 391
GLD SL+ ++
Sbjct: 389 GLDESLIESV 398
>gi|218895441|ref|YP_002443852.1| TrmA family RNA methyltransferase [Bacillus cereus G9842]
gi|228899050|ref|ZP_04063323.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL
4222]
gi|218544636|gb|ACK97030.1| RNA methyltransferase, TrmA family [Bacillus cereus G9842]
gi|228860625|gb|EEN05012.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL
4222]
Length = 454
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 74 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRN 131
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 132 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEE 191
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 192 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIVEEIA----- 233
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 234 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 288
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 289 PEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 348
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 349 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 398
>gi|407478175|ref|YP_006792052.1| TrmA family RNA methyltransferase [Exiguobacterium antarcticum B7]
gi|407062254|gb|AFS71444.1| RNA methyltransferase, TrmA family [Exiguobacterium antarcticum B7]
Length = 454
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 89/388 (22%), Positives = 164/388 (42%), Gaps = 67/388 (17%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKL 106
CP + C GC + + + D F + L+ T +G+R +A++
Sbjct: 74 CPVYNQCGGCQLQHLSYEAELQFKHNRVRDAFARLAGLEIPVHETMGMEDPWGYRNKAQV 133
Query: 107 AVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTG 166
V S + G YQ+ +H ++D+ +C + + A++ +R+ + +L V YDE +G
Sbjct: 134 PVAFQSNKLMAGFYQKRSHRIIDMDYCLIQNKENDEAIQAVRKVLADLKVPAYDEKKNSG 193
Query: 167 DLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSR 226
+R++ A Y ++ I LV + + ++ + E + + +
Sbjct: 194 VIRHIM-----------ARHGYHTNELMIVLVTKVKQLRG-----VDKIVEGILKAVPN- 236
Query: 227 SREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFD 286
+ S+ N NVI G R L G + + + G+ ++P SF Q N +
Sbjct: 237 -----VTSIQHNINPDETNVILGKRNIVLHGPSVIRDQIAGLTYEISPHSFFQVNPLQTE 291
Query: 287 ILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR 344
L K +Y V D Y G G I LSL A++ + V +E+
Sbjct: 292 KLYGKALEYAQLTGDEIVVDAYCGIGSISLSL--AQQAKHVYGIEM-------------- 335
Query: 345 LPKSVDGNISWHNAD-NSIEPLSWLVGS---------------DVLVVDPPRKGLDSSLV 388
+P+++D + NA N I+ +S+ G+ DV+VVDPPRKG D +
Sbjct: 336 VPQAIDD--ARRNAKANGIDNVSFEYGTAETVMPALVKNGIKPDVIVVDPPRKGCDEEFL 393
Query: 389 HALQSIGSAERKAKSLSESSSSMVKEEK 416
A + A ++ +S ++S+ ++ K
Sbjct: 394 RAAAEV--APKRIVYVSCNASTQARDAK 419
>gi|402312085|ref|ZP_10831015.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium ICM7]
gi|400370746|gb|EJP23728.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium ICM7]
Length = 392
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 80/350 (22%), Positives = 152/350 (43%), Gaps = 39/350 (11%)
Query: 52 LQCPHFQSCSGCTH---EFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAV 108
L+C + C GC + +N H +D A K G D Y +R + AV
Sbjct: 16 LKCAVAKKCGGCDYINSSYNKHVKEKLDTANSLIKKYGKFDGIVSMSNPYHYRNKVS-AV 74
Query: 109 RGTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGD 167
G +I G Y++ +H VVD +C + + ++ +++ ++ YDED G
Sbjct: 75 FGFENKKIIAGTYEKNSHRVVDTKNCLIEDEKAGSIIQTIKKMCVSFKIKAYDEDSGFGF 134
Query: 168 LRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRS 227
LR+V + V ++G++ + LV + N PN + + R
Sbjct: 135 LRHVLIRVGK-----------KSGQIMVVLV--TSNVIFPNKNAFIKVL---------RG 172
Query: 228 REHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDI 287
I ++ N +++ G+R + G+ + + G+ ++P SF Q N +
Sbjct: 173 EHPEITTIVQNINNKNTSMVLGDREIVMYGKGYITDELCGLTFKISPKSFYQVNREQTEK 232
Query: 288 LLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRL 345
L + +Y + + D Y+G G IG L A++ + V VE+NK++ + ++
Sbjct: 233 LYSQAIEYAGLQGNEILLDAYSGIGTIG--LIASKSAKEVISVELNKDAH---KDAITNA 287
Query: 346 PKSVDGNISWHNADNSIEPLSWLVGS----DVLVVDPPRKGLDSSLVHAL 391
+ N+ ++NAD + ++ L + DV+++DPPR G + A+
Sbjct: 288 KINNIKNVKFYNAD-ATHFINDLAAAGEKIDVVILDPPRTGSTEEFIAAI 336
>gi|423422554|ref|ZP_17399585.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG3X2-2]
gi|401119058|gb|EJQ26884.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG3X2-2]
Length = 458
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 293 PEQTKVLYDKTLEYAKLSGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 352
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 353 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|168487479|ref|ZP_02711987.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae CDC1087-00]
gi|419510654|ref|ZP_14050297.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae NP141]
gi|419530333|ref|ZP_14069862.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA40028]
gi|421215259|ref|ZP_15672187.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2070109]
gi|183569696|gb|EDT90224.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae CDC1087-00]
gi|379573852|gb|EHZ38799.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA40028]
gi|379632707|gb|EHZ97279.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae NP141]
gi|395581392|gb|EJG41864.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2070109]
Length = 543
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 139/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +HN++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVVLVTTR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGLSV--AKHVKEVYGVELIPEA-VE 340
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
K ++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 341 NSKKNAQLNNISNAHYVCDTAENAMK--NWLKDGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|55822623|ref|YP_141064.1| TrmA family tRNA methyltransferase [Streptococcus thermophilus
CNRZ1066]
gi|55738608|gb|AAV62249.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus
CNRZ1066]
Length = 453
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 89/366 (24%), Positives = 161/366 (43%), Gaps = 49/366 (13%)
Query: 64 THEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGL 119
T + R +VD + +K+ G+ D T Y +R +A++ VR G
Sbjct: 89 TEQLKFKRKQVVD---NLYKTAGISDVEVAETLGMETPYAYRNKAQVPVRRVKGQLETGF 145
Query: 120 YQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYN 179
Y++ +H+++ I I+ + +R ++ +++PYDE ++TG +R++ + Y+
Sbjct: 146 YRKNSHDLIPIEDFLIQDKEIDKLIVFVRDLLRRYDLKPYDEKEQTGLIRHLVVRRGHYS 205
Query: 180 TSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHY--IHSVWA 237
Q+ LV+ + K D++ ++ E + I S+
Sbjct: 206 G-------------QMMLVFVTTKPKVFRIDQV-----------IAKITEAFPSIVSIIQ 241
Query: 238 NFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVP 297
N N IFG +R L G+ +++ G D ++ SF Q NT + L + +
Sbjct: 242 NINDKNTNAIFGKEFRTLYGQDTITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDFSD 301
Query: 298 YGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISW 355
+ V D Y+G G IGLS A++ R V VE+ + + +K R +G +
Sbjct: 302 LNSDSIVIDAYSGIGTIGLSF--AKQVREVYGVEVIETAVEDAKKNAER-----NGITNA 354
Query: 356 HNADNSIE--PLSWL---VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSS 410
H +S E W + DV++VDPPRKGL S + A S+ K +S + ++
Sbjct: 355 HYVADSAENAMAKWSQDGIKPDVIIVDPPRKGLTESFIKA--SVAMQPEKITYVSCNPAT 412
Query: 411 MVKEEK 416
M ++ K
Sbjct: 413 MARDIK 418
>gi|149012968|ref|ZP_01833857.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP19-BS75]
gi|169832868|ref|YP_001694472.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae Hungary19A-6]
gi|303255584|ref|ZP_07341635.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae BS455]
gi|303260473|ref|ZP_07346441.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP-BS293]
gi|303262830|ref|ZP_07348767.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP14-BS292]
gi|303265300|ref|ZP_07351210.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae BS397]
gi|303266507|ref|ZP_07352394.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae BS457]
gi|303268374|ref|ZP_07354170.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae BS458]
gi|387759273|ref|YP_006066251.1| putative RNA methyltransferase [Streptococcus pneumoniae INV200]
gi|410476563|ref|YP_006743322.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae gamPNI0373]
gi|418139380|ref|ZP_12776210.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA13338]
gi|418180201|ref|ZP_12816773.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA41688]
gi|419514583|ref|ZP_14054210.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae England14-9]
gi|421295979|ref|ZP_15746691.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA58581]
gi|147763121|gb|EDK70062.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP19-BS75]
gi|168995370|gb|ACA35982.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae Hungary19A-6]
gi|301801862|emb|CBW34580.1| putative RNA methyltransferase [Streptococcus pneumoniae INV200]
gi|302597440|gb|EFL64535.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae BS455]
gi|302636028|gb|EFL66526.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP14-BS292]
gi|302638385|gb|EFL68852.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP-BS293]
gi|302642095|gb|EFL72446.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae BS458]
gi|302643958|gb|EFL74218.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae BS457]
gi|302645165|gb|EFL75402.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae BS397]
gi|353846167|gb|EHE26202.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA41688]
gi|353905623|gb|EHE81046.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA13338]
gi|379637679|gb|EIA02232.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae England14-9]
gi|395897192|gb|EJH08156.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA58581]
gi|406369508|gb|AFS43198.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae gamPNI0373]
Length = 543
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 139/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +HN++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVVLVATR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGLSV--AKHVKEVYGVELIPEA-VE 340
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
K ++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 341 NSKKNAQLNNISNAHYVCDTAENAMK--NWLKDGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|449087035|ref|YP_007419476.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus thuringiensis
serovar kurstaki str. HD73]
gi|449020792|gb|AGE75955.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus thuringiensis
serovar kurstaki str. HD73]
Length = 455
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 74 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRN 131
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 132 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEE 191
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 192 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 233
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 234 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 288
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 289 PEQTKVLYDKTLEYAKLSGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 348
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 349 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 398
>gi|423387199|ref|ZP_17364453.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG1X1-2]
gi|401629831|gb|EJS47642.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG1X1-2]
Length = 458
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMQNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 293 PEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 352
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 353 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|423461605|ref|ZP_17438402.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG5X2-1]
gi|401136547|gb|EJQ44136.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG5X2-1]
Length = 458
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 86/352 (24%), Positives = 154/352 (43%), Gaps = 40/352 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C +A ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDALIQEVKRICEKHGISAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG+ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNTKRTNVIFGDTTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 293 PEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 352
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I P + G +D +VVDPPRKG D +L++ +
Sbjct: 353 AA-LNNMTNAEFGVGEAEVVI-PKWYKEGIIADTMVVDPPRKGCDDALLNTI 402
>gi|420145026|ref|ZP_14652503.1| putative RNA methyltransferase [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398403353|gb|EJN56605.1| putative RNA methyltransferase [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 465
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 90/340 (26%), Positives = 144/340 (42%), Gaps = 62/340 (18%)
Query: 74 IVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVD 129
++ ++ + FK G + T Y +R +A+ VR + GLYQE +H +VD
Sbjct: 107 VIRQSLEKFKPRGYQHYKLRPTIGMAEPYEYRDKAQFQVRELNGHVAAGLYQEHSHQLVD 166
Query: 130 IPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYR 189
+ P + + ++EL V Y+E+ +G ++ +L E +
Sbjct: 167 LKTFSTQRPATMQVIRYVVALLEELKVPIYNEEQNSGIVK-----------TLVVRESFS 215
Query: 190 NGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFG 249
G +Q+T + NSR KL E L R ++ I S+ N ++I+G
Sbjct: 216 TGHLQLTFITNSR--------KLPHKRELLSR---IHTKMPQITSIMQNLNQGRTSLIWG 264
Query: 250 NRWRHLLGETDFWENVGGIDISLAPSSFGQAN---TRAFDILLRKLQKYVPYGASVTDLY 306
+L G+ E + G+ L+ +F Q N T L R+ + P+ S+ D Y
Sbjct: 265 EETFNLAGDDYITETLSGLTFKLSARAFFQLNPAQTAKMYALAREALQLAPH-ESLVDAY 323
Query: 307 AGAGVIGLSLA-AARKCRSVKCVEINKESQLSFEKTVSRLPKSV---DGNISWHNADNS- 361
G G IGLSLA A + R + V P ++ N + ++ DN+
Sbjct: 324 CGVGTIGLSLADTASEVRGMDIV-----------------PAAIADAQENANLNHIDNAK 366
Query: 362 -----IEPL--SWLVGS---DVLVVDPPRKGLDSSLVHAL 391
E L WL D LVVDPPR GLD +L+HA+
Sbjct: 367 YEVGKAEELLPQWLAAGFAPDALVVDPPRTGLDQALLHAI 406
>gi|307706544|ref|ZP_07643351.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
SK321]
gi|307617999|gb|EFN97159.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
SK321]
Length = 451
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 140/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ V +LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGILETGFFRKNSHDLMPLEDFFIQDPVIDEVVVVLRDLLRRYDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE ++ G +R +L + +G++ + LV P ++E L E L
Sbjct: 186 DEKEQAGLIR-----------NLVVRRGHYSGQIMVILVTTR-----PKVFRVEQLIEQL 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDYQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKEDDVVIDAYSGIGTIGLSV--AKHVKEVYGVEVIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K ++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 342 SKKN-AQLNNISNAHYVCDTAENAMK--NWLKEGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|225858819|ref|YP_002740329.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 70585]
gi|225721367|gb|ACO17221.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 70585]
Length = 453
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 140/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +HN++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVVLVTTR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGLSV--AKHVKEVYGVELIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K ++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 342 SKKN-AQLNNISNAHYVCDTAENAMK--NWLKDGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|148994234|ref|ZP_01823527.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP9-BS68]
gi|168488850|ref|ZP_02713049.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP195]
gi|168576242|ref|ZP_02722136.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae MLV-016]
gi|417678981|ref|ZP_12328378.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA17570]
gi|418125652|ref|ZP_12762562.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA44511]
gi|418148452|ref|ZP_12785217.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA13856]
gi|418191572|ref|ZP_12828076.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47388]
gi|419470979|ref|ZP_14010838.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA07914]
gi|419484109|ref|ZP_14023885.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA43257]
gi|421220174|ref|ZP_15677023.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2070425]
gi|421223482|ref|ZP_15680259.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2070531]
gi|421238764|ref|ZP_15695331.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2071247]
gi|421244846|ref|ZP_15701347.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2081685]
gi|421278800|ref|ZP_15729608.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA17301]
gi|421294278|ref|ZP_15745001.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA56113]
gi|421300891|ref|ZP_15751561.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA19998]
gi|147927375|gb|EDK78406.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP9-BS68]
gi|183572483|gb|EDT93011.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP195]
gi|183577973|gb|EDT98501.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae MLV-016]
gi|332073360|gb|EGI83839.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA17570]
gi|353797618|gb|EHD77951.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA44511]
gi|353813127|gb|EHD93360.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA13856]
gi|353857473|gb|EHE37436.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47388]
gi|379545695|gb|EHZ10834.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA07914]
gi|379583620|gb|EHZ48497.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA43257]
gi|395585941|gb|EJG46319.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2070531]
gi|395588178|gb|EJG48511.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2070425]
gi|395602027|gb|EJG62172.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2071247]
gi|395609346|gb|EJG69433.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2081685]
gi|395880233|gb|EJG91286.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA17301]
gi|395894568|gb|EJH05548.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA56113]
gi|395898451|gb|EJH09395.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA19998]
Length = 543
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 139/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +HN++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVVLVTTR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGLSV--AKHVKEVYGVELIPEA-VE 340
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
K ++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 341 NSKKNAQLNNISNAHYVCDTAENAMK--NWLKDGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|423421512|ref|ZP_17398601.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG3X2-1]
gi|401098312|gb|EJQ06327.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG3X2-1]
Length = 458
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNECGGCQLQHLTYEGQLKAK--EKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 293 PEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 352
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 353 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|227523038|ref|ZP_03953087.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
hilgardii ATCC 8290]
gi|227089856|gb|EEI25168.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
hilgardii ATCC 8290]
Length = 456
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 137/310 (44%), Gaps = 54/310 (17%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
Y +R +A++ VR + G Y++ +H++V I P I+ AV ++R +++ +
Sbjct: 127 YHYRNKAQIPVRMLNGRLQTGFYRKHSHDLVPIEDFYIQDPEIDKAVVIVRDILRKFQIT 186
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
PYDE G +R + + Y+ + I L+ S+ KL S AE
Sbjct: 187 PYDEQTHRGVIRNIMVRRGHYSHEM-----------MIVLITKSK--------KLPSEAE 227
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
+ + S+ N N + GN+ + L G+ + + G+D ++P+SF
Sbjct: 228 IISETVNQLPE---VKSIVQNINPKNTNSLMGNQNKVLWGKGTITDQLMGLDFEISPNSF 284
Query: 278 GQAN----TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLA-AARKCRSVKCV---- 328
Q N + + + ++K Q + V D Y G G I LSLA +K V+ V
Sbjct: 285 YQVNPIQTEKLYKLAIQKAQ--LNKDDIVIDAYCGIGTISLSLAKVVKKVYGVEIVPEAI 342
Query: 329 -------EINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRK 381
INK S F V++ + + W A ++P DV+VVDPPRK
Sbjct: 343 EDAKRNAHINKISNCKF--VVAKAEEQLG---KWQKA--GLKP-------DVIVVDPPRK 388
Query: 382 GLDSSLVHAL 391
GLD SL+ ++
Sbjct: 389 GLDESLIESV 398
>gi|418199915|ref|ZP_12836360.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47976]
gi|353864962|gb|EHE44871.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47976]
Length = 543
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 139/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +HN++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVVLVATR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGLSV--AKHVKEVYGVELIPEA-VE 340
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
K ++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 341 NSKKNAQLNNISNAHYVCDTAENAMK--NWLKDGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|228963414|ref|ZP_04124575.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228796308|gb|EEM43755.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar sotto str. T04001]
Length = 455
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 74 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRN 131
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 132 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEE 191
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 192 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIVEEIA----- 233
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 234 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 288
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 289 PEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 348
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 349 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 398
>gi|423415794|ref|ZP_17392914.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG3O-2]
gi|423428412|ref|ZP_17405416.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG4O-1]
gi|423644872|ref|ZP_17620488.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD166]
gi|401095529|gb|EJQ03587.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG3O-2]
gi|401125906|gb|EJQ33662.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG4O-1]
gi|401268916|gb|EJR74952.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD166]
Length = 458
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 293 PEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 352
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 353 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|228950875|ref|ZP_04112998.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228808804|gb|EEM55300.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar kurstaki str. T03a001]
Length = 454
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 74 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRN 131
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 132 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEE 191
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 192 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 233
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 234 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 288
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 289 PEQTKVLYDKTLEYAKLSGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 348
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 349 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 398
>gi|377832238|ref|ZP_09815200.1| RNA methyltransferase [Lactobacillus mucosae LM1]
gi|377553874|gb|EHT15591.1| RNA methyltransferase [Lactobacillus mucosae LM1]
Length = 457
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 86/338 (25%), Positives = 152/338 (44%), Gaps = 60/338 (17%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
Y +R +A++ V+ G Y+ G+H++V I P+I+AA+ ++R +++ N+
Sbjct: 129 YQYRNKAQVPVKYMKGQLQTGFYKRGSHDLVPIEDFYIQDPKIDAAILVVRDLLRKYNIR 188
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
YDE G +R V + Y + ++ + LV N++ + P+++++ +
Sbjct: 189 AYDERTGRGCIRTVMV-----------RRGYYSHEIMVVLVTNTK--QLPHAEEIAA--- 232
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
G S + S+ N T N + G L G + + GID +++P SF
Sbjct: 233 ------GIVSGVPEVKSIVQNVNTKRTNKLLGLENHTLWGSDTIHDQLLGIDFTISPLSF 286
Query: 278 GQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q N + + L + + +V D Y G G I SLA A+ + V VEI
Sbjct: 287 YQVNPQQTEKLYQTAIEAAELDGTQTVIDAYCGIGTI--SLAVAKHAKKVYGVEI----- 339
Query: 336 LSFEKTVSRLPKSVDGNISWHNAD-NSIEPLSWLVGS---------------DVLVVDPP 379
+P +++ + NA N IE + VG DVL+VDPP
Sbjct: 340 ---------VPAAIED--AKQNAKVNQIENAEFAVGKAEEQMAKWQKEGLKPDVLIVDPP 388
Query: 380 RKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKR 417
RKGLD +L+ A + A K +S + +++V++ +R
Sbjct: 389 RKGLDETLIDAAGKMAPA--KIIYVSCNQATLVRDLQR 424
>gi|228906093|ref|ZP_04069982.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL
200]
gi|229042217|ref|ZP_04189971.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH676]
gi|228727152|gb|EEL78355.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH676]
gi|228853502|gb|EEM98270.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL
200]
Length = 454
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 74 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRN 131
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 132 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEE 191
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 192 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 233
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 234 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 288
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 289 PEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 348
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 349 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 398
>gi|418146248|ref|ZP_12783030.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA13637]
gi|353815044|gb|EHD95266.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA13637]
Length = 543
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 139/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +HN++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVVLVTTR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGLSV--AKHVKEVYGVELIPEA-VE 340
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
K ++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 341 NSKKNAQLNNISNAHYVCDTAENAMK--NWLKDGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|229107991|ref|ZP_04237618.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-15]
gi|228675494|gb|EEL30711.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-15]
Length = 454
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 74 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLANVPVHPVLGMKNPWVYRN 131
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 132 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEE 191
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 192 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 233
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 234 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 288
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 289 PEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 348
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 349 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 398
>gi|423363238|ref|ZP_17340737.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD022]
gi|401076330|gb|EJP84686.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD022]
Length = 459
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 293 PEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 352
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 353 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|418027718|ref|ZP_12666332.1| Methyltransferase [Streptococcus thermophilus CNCM I-1630]
gi|354689984|gb|EHE89948.1| Methyltransferase [Streptococcus thermophilus CNCM I-1630]
Length = 453
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 89/367 (24%), Positives = 161/367 (43%), Gaps = 49/367 (13%)
Query: 64 THEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGL 119
T + R +VD + +K+ G+ D T Y +R +A++ VR G
Sbjct: 89 TEQLKFKRKQVVD---NLYKTAGISDVEVAETLGMETPYAYRNKAQVPVRRVKGQLETGF 145
Query: 120 YQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYN 179
Y++ +H+++ I I+ + +R ++ +++PYDE ++TG +R++ + Y+
Sbjct: 146 YRKNSHDLIPIEDFLIQDKEIDKLIVFVRDLLRRYDLKPYDEKEQTGLIRHLVVRRGHYS 205
Query: 180 TSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHY--IHSVWA 237
Q+ LV+ + K D++ ++ E + I S+
Sbjct: 206 G-------------QMMLVFVTTKPKVFRIDQV-----------IAKITEAFPSIVSIIQ 241
Query: 238 NFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVP 297
N N IFG +R L G+ + + G D ++ SF Q NT + L + +
Sbjct: 242 NINDKNTNAIFGKEFRTLYGQDTITDRMLGNDYEISAQSFYQVNTEMAEKLYQIAIDFSD 301
Query: 298 YGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISW 355
+ V D Y+G G IGLS A++ + V VE+ + + +K R +G +
Sbjct: 302 LNSDSIVIDAYSGIGTIGLSF--AKQVKEVYGVEVIETAVEDAKKNAER-----NGITNA 354
Query: 356 HNADNSIE--PLSWL---VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSS 410
H +S E W + DV++VDPPRKGL S + A S+ K +S + ++
Sbjct: 355 HYVADSAENAMAKWSKDGIKPDVIIVDPPRKGLTESFIKA--SVAMQPEKITYVSCNPAT 412
Query: 411 MVKEEKR 417
M ++ KR
Sbjct: 413 MARDIKR 419
>gi|423565343|ref|ZP_17541619.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
MSX-A1]
gi|434378981|ref|YP_006613625.1| tRNA (Uracil-5-)-methyltransferase [Bacillus thuringiensis HD-789]
gi|401194353|gb|EJR01338.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
MSX-A1]
gi|401877538|gb|AFQ29705.1| tRNA (Uracil-5-)-methyltransferase [Bacillus thuringiensis HD-789]
Length = 458
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIVEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 293 PEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 352
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 353 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|407708284|ref|YP_006831869.1| 4Fe-4S ferredoxin [Bacillus thuringiensis MC28]
gi|407385969|gb|AFU16470.1| putative RNA methyltransferase [Bacillus thuringiensis MC28]
Length = 465
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 85 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRN 142
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C +A ++ +++ ++ + Y+E+
Sbjct: 143 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDALIQEVKRICEKHGISAYNEE 202
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 203 CNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 244
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG+ L G ++ +G I +++ SF Q N
Sbjct: 245 -----AKFPEVKSIVQNVNTKRTNVIFGDTTTVLYGSEYIYDFIGDIKFAISARSFYQVN 299
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 300 PEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 359
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 360 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 409
>gi|405761145|ref|YP_006701741.1| RNA methyltransferase [Streptococcus pneumoniae SPNA45]
gi|404278034|emb|CCM08608.1| putative RNA methyltransferase [Streptococcus pneumoniae SPNA45]
Length = 543
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 139/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ V LR I+ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFFIQDPVIDQVVVALRDLIRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVVLVTTR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGLSV--AKHVKEVYGVELIPEA-VE 340
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
K ++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 341 NSKKNAQLNNISNAHYVCDTAENAMK--NWLKDGIQPTVILVDPPRKGLTESFIKASDQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|445374528|ref|ZP_21426408.1| TrmA family tRNA methyltransferase [Streptococcus thermophilus MTCC
5460]
gi|444750614|gb|ELW75415.1| TrmA family tRNA methyltransferase [Streptococcus thermophilus MTCC
5460]
Length = 411
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 89/366 (24%), Positives = 160/366 (43%), Gaps = 49/366 (13%)
Query: 64 THEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGL 119
T + R +VD + +K+ G+ D T Y +R +A++ VR G
Sbjct: 47 TEQLKFKRKQVVD---NLYKTAGISDVEVAETLGMETPYAYRNKAQVPVRRVKGQLETGF 103
Query: 120 YQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYN 179
Y++ +H+++ I I+ + +R ++ +++PYDE ++TG +R++ + Y+
Sbjct: 104 YRKNSHDLIPIEDFLIQDKEIDKLIVFVRDLLRRYDLKPYDEKEQTGLIRHLVVRRGHYS 163
Query: 180 TSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHY--IHSVWA 237
Q+ LV+ + K D++ ++ E + I S+
Sbjct: 164 G-------------QMMLVFVTTKPKVFRIDQV-----------IAKITEAFPSIVSIIQ 199
Query: 238 NFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVP 297
N N IFG +R L G+ + + G D ++ SF Q NT + L + +
Sbjct: 200 NINDKNTNAIFGKEFRTLYGQDTITDRMLGNDYEISAQSFYQVNTEMAEKLYQIAIDFSD 259
Query: 298 YGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISW 355
+ V D Y+G G IGLS A++ + V VE+ + + +K R +G +
Sbjct: 260 LNSDSIVIDAYSGIGTIGLSF--AKQVKKVYGVEVIETAVEDAKKNAER-----NGITNA 312
Query: 356 HNADNSIE--PLSWL---VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSS 410
H NS E W + DV++VDPPRKGL S + A S+ K +S + ++
Sbjct: 313 HYVANSAENAMAKWSQDGIKPDVIIVDPPRKGLTESFIKA--SVAMQPEKITYVSCNPAT 370
Query: 411 MVKEEK 416
M ++ K
Sbjct: 371 MARDIK 376
>gi|398814110|ref|ZP_10572793.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Brevibacillus sp.
BC25]
gi|398037054|gb|EJL30256.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Brevibacillus sp.
BC25]
Length = 477
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 98/367 (26%), Positives = 156/367 (42%), Gaps = 73/367 (19%)
Query: 54 CPHFQSCSGCT-----HEFNL-HRPIIVDEATDFFKSIGLLDFTFDSCRLYG-------- 99
CP + C GC+ +E L H+ IV D + IG +
Sbjct: 93 CPLYDRCGGCSLQHLVYEEQLRHKQQIV---RDNLRRIGGFQVEGEGAITVHPTLGMSDP 149
Query: 100 WRCRAKLAV-RGTSTSPLIG-LYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
WR R K V G L+G Y E +H+++D+ C H + AV ++Q +LN+
Sbjct: 150 WRYRNKAQVPIGEENGALVGGFYAEKSHSIIDMNECLIQHQVNDEAVAAVKQAATKLNIT 209
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLA 216
YDE +G LR+V + V ++ +V + E+ P D+L E++
Sbjct: 210 AYDEVRHSGLLRHVVVKVGVKTG-------------EVMVVLVTTEEQIPQRDELVEAI- 255
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
R++ + S+ N NVIFG + L G ++ +G I +++ S
Sbjct: 256 ---------RAQVAGVTSIVQNINPDKTNVIFGKKTVTLWGSDVIYDYIGSIKFAISARS 306
Query: 277 FGQANTRAFDILLRKLQKYVPYGA----SVTDLYAGAGVIGLSLAAARKCRSVKCVEI-- 330
F Q N ++L K +Y GA +V D Y G G I L L A+K + V VEI
Sbjct: 307 FYQVNPVQTEVLYNKTLEYA--GATGTETVIDAYCGIGTISLFL--AQKSKHVYGVEIVP 362
Query: 331 ------NKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRK 381
N+ +QL+ + N ++ + +W + +DV+VVDPPRK
Sbjct: 363 EAIEDANRNAQLNGVE-----------NATFEAGPAEVVIPAWKEKGIRADVIVVDPPRK 411
Query: 382 GLDSSLV 388
G D +L+
Sbjct: 412 GCDEALL 418
>gi|387879386|ref|YP_006309689.1| RNA methyltransferase, TrmA family protein [Streptococcus
parasanguinis FW213]
gi|386792840|gb|AFJ25875.1| RNA methyltransferase, TrmA family protein [Streptococcus
parasanguinis FW213]
Length = 455
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 138/302 (45%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ I P I+ V LR I+ +++PY
Sbjct: 129 YRNKAQVPVRRVNGQVETGFFRKNSHDLMPIEDFYIQDPVIDQVVLALRDLIRRFDLKPY 188
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E L
Sbjct: 189 DEKEQSGLIR-----------NLVVRRGHHSGEIMVILVTTR-----PKVFRVDQLIEQL 232
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ + I SV N N IFG WR L G+ + + G ++ +F Q
Sbjct: 233 IKQFPA------IKSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNSFQISGPAFYQ 286
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 287 VNTEMAEKLYQTAIDFAELKEEDVVIDAYSGIGTIGLSV--AKHVKEVYGVEVIPEAVKN 344
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K S L + + A+N+++ +WL + ++VDPPRKGL S + A
Sbjct: 345 SQKNAS-LNGITNAHYVCDTAENAMK--NWLKEGIQPTAILVDPPRKGLTESFIKASAQT 401
Query: 395 GS 396
G+
Sbjct: 402 GA 403
>gi|194397238|ref|YP_002037663.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae G54]
gi|419490940|ref|ZP_14030680.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47179]
gi|419532350|ref|ZP_14071866.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47794]
gi|421275793|ref|ZP_15726620.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA52612]
gi|194356905|gb|ACF55353.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae G54]
gi|379594519|gb|EHZ59329.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47179]
gi|379606134|gb|EHZ70883.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47794]
gi|395872213|gb|EJG83312.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA52612]
Length = 543
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 139/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +HN++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVVLVTTR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + + D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKKDDVIIDAYSGIGTIGLSV--AKHVKEVYGVELIPEA-VE 340
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
K ++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 341 NSKKNAQLNNISNAHYVCDTAENAMK--NWLKDGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|423480465|ref|ZP_17457155.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG6X1-2]
gi|401147401|gb|EJQ54903.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG6X1-2]
Length = 458
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNECGGCQLQHLTYEGQLKAK--EKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 293 PEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 352
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 353 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|229021911|ref|ZP_04178475.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1272]
gi|228739383|gb|EEL89815.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1272]
Length = 465
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 152/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 85 ECPVYNECGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRN 142
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 143 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKYGISAYNEE 202
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 203 HNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 244
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG+ L G ++ +G I +++ SF Q N
Sbjct: 245 -----AKFPEVKSIVQNVNTKRTNVIFGDTTTVLYGSEYIYDFIGDIKFAISARSFYQVN 299
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 300 PEQTKVLYDKTLEYAQLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 359
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 360 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 409
>gi|15902976|ref|NP_358526.1| hypothetical protein spr0932 [Streptococcus pneumoniae R6]
gi|116515807|ref|YP_816392.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae D39]
gi|149019625|ref|ZP_01834944.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP23-BS72]
gi|168483100|ref|ZP_02708052.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae CDC1873-00]
gi|418175846|ref|ZP_12812443.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA41437]
gi|418238600|ref|ZP_12865155.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae NorthCarolina6A-23]
gi|419475421|ref|ZP_14015261.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA14688]
gi|419525776|ref|ZP_14065339.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA14373]
gi|421208849|ref|ZP_15665870.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2070005]
gi|421224898|ref|ZP_15681641.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2070768]
gi|421240585|ref|ZP_15697131.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2080913]
gi|50401573|sp|Q8DPY7.1|Y932_STRR6 RecName: Full=Uncharacterized RNA methyltransferase spr0932
gi|15458541|gb|AAK99736.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
gi|116076383|gb|ABJ54103.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae D39]
gi|147931000|gb|EDK81980.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP23-BS72]
gi|172043444|gb|EDT51490.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae CDC1873-00]
gi|353842414|gb|EHE22461.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA41437]
gi|353894350|gb|EHE74092.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae NorthCarolina6A-23]
gi|379558469|gb|EHZ23503.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA14373]
gi|379560966|gb|EHZ25987.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA14688]
gi|395575187|gb|EJG35757.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2070005]
gi|395590376|gb|EJG50683.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2070768]
gi|395608376|gb|EJG68470.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2080913]
Length = 543
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 139/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +HN++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVVLVTTR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGLAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGLSV--AKHVKEVYGVELIPEA-VE 340
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
K ++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 341 NSKKNAQLNNISNAHYVCDTAENAMK--NWLKDGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|421206483|ref|ZP_15663543.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2090008]
gi|421229675|ref|ZP_15686346.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2061376]
gi|421291901|ref|ZP_15742639.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA56348]
gi|421311836|ref|ZP_15762441.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA58981]
gi|395576122|gb|EJG36680.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2090008]
gi|395596083|gb|EJG56306.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2061376]
gi|395894118|gb|EJH05099.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA56348]
gi|395911225|gb|EJH22093.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA58981]
Length = 543
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 139/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +HN++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVVLVTTR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + + D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKKDDVIIDAYSGIGTIGLSV--AKHVKEVYGVELIPEA-VE 340
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
K ++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 341 NSKKNAQLNNISNAHYVCDTAENAMK--NWLKDGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|419493306|ref|ZP_14033032.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47210]
gi|379593481|gb|EHZ58293.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47210]
Length = 543
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 139/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +HN++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGILETGFFRKNSHNLMPLEDFFIQDPVIDELVVGLRDLLRRYDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE ++ G +R +L + +G++ + LV P +++ L E L
Sbjct: 186 DEKEQAGLIR-----------NLVVRRGHYSGQIMVILVTTR-----PKVFRVDQLIEQL 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A S+F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDYQIAGSAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGLSV--AKHVKEVYGVELIPEA-VE 340
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
K ++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 341 NSKKNAQLNNISNAHYVCDTAENAMK--NWLKDGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|422741474|ref|ZP_16795499.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX2141]
gi|315143898|gb|EFT87914.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX2141]
Length = 456
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/361 (23%), Positives = 148/361 (40%), Gaps = 58/361 (16%)
Query: 54 CPHFQSCSGCTHEFNLHRPII------VDEATDFFKSIGLLDF----TFDSCRLYGWRCR 103
CP +++C GC + ++ + + +A + FK ++ T + +R +
Sbjct: 76 CPVYETCGGCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMENPWNYRNK 135
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A+ +R GLYQ +H +V I +C P + L + + + YDE
Sbjct: 136 AQFQLRQIDGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERK 195
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-----ESLAEF 218
+G R + + V + G+VQ+ + ++++K P +K+ E L E
Sbjct: 196 NSGIFRTLMVRVGI-----------QTGEVQVVFI--TQSQKFPQKEKMVRAINEQLPEV 242
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ S+ N Q +++ G+ HL G+ E++ + L+P +F
Sbjct: 243 V--------------SIMQNVQNKKTSLVMGDDTLHLWGKESIEEHINDVVFDLSPRAFF 288
Query: 279 QANTRAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAA-ARKCRSVKCVEINKESQ 335
Q N ++L + K + +V D Y G G IGLSLA A + R + + +
Sbjct: 289 QLNPEQTEVLYNEGIKVLDLQPNETVVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDD- 347
Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWL---VGSDVLVVDPPRKGLDSSLVHA 390
+R G + H A + E L W D +VVDPPR GLD L+ A
Sbjct: 348 -------ARFNAKRLGVTNTHYAVGTAEDLLPKWFKEGFKPDAIVVDPPRTGLDRKLLTA 400
Query: 391 L 391
L
Sbjct: 401 L 401
>gi|229015714|ref|ZP_04172696.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1273]
gi|228745571|gb|EEL95591.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1273]
Length = 458
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 152/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNECGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKYGISAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 HNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG+ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNTKRTNVIFGDTTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 293 PEQTKVLYDKTLEYAQLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 352
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 353 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|228989496|ref|ZP_04149481.1| Uncharacterized RNA methyltransferase [Bacillus pseudomycoides DSM
12442]
gi|228770221|gb|EEM18800.1| Uncharacterized RNA methyltransferase [Bacillus pseudomycoides DSM
12442]
Length = 465
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 88/354 (24%), Positives = 155/354 (43%), Gaps = 44/354 (12%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIG-LLDF----TFDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L D + +R
Sbjct: 85 ECPVYNQCGGCQLQHLTYEGQLKAK--EKQVRDVMQRIGGLHDVPVHPVLGMENPWVYRN 142
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C +A ++ +++ ++ + Y+E+
Sbjct: 143 KAQVPIGEREGGLVAGFYRQGTHDIINMETCLIQAEENDALIQEVKRICEKHGITAYNEE 202
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL--ESLAEFLW 220
G LR+V MA RY +I LV+ +R + PN + E A+F
Sbjct: 203 RHKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEITAKF-- 247
Query: 221 RNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQA 280
+ S+ N T NVIFG+ L G ++ +G I +++ SF Q
Sbjct: 248 ---------PNVKSIVQNVNTKRTNVIFGDTTTVLYGSEYIYDFIGDIKFAISARSFYQV 298
Query: 281 NTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
N +L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 299 NPEQTKVLYDKALEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANR 358
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + + A+ I +W V +D +VVDPPRKG D +L++ +
Sbjct: 359 NAA-LNNMTNAEFAVGEAEVVIP--NWYKEGVIADTIVVDPPRKGCDEALLNTI 409
>gi|125974255|ref|YP_001038165.1| RNA methyltransferase [Clostridium thermocellum ATCC 27405]
gi|125714480|gb|ABN52972.1| RNA methyltransferase, TrmA family [Clostridium thermocellum ATCC
27405]
Length = 453
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 93/368 (25%), Positives = 156/368 (42%), Gaps = 74/368 (20%)
Query: 54 CPHFQSCSGCT-----HEFNLH-RPIIVDEATDFFKSIGLLD--FTFDSCRL---YGWRC 102
CP ++ C GC+ +E +L + +V E+ + IG L+ D+ + +R
Sbjct: 74 CPSYKRCGGCSLQHMNYEASLRFKTNVVRES---IRRIGGLENVVVHDTVGMEQPVNYRN 130
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A+ + G Y + +H ++D C H + ++++ I++ N+ YDE
Sbjct: 131 KAQYPIGRYKDGIRAGFYAKRSHEIIDCATCTIQHSVSDRVRAVVKEYIEKNNISTYDEI 190
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G +R++ V ++ G+V + LV N RN P+ KL + L + +
Sbjct: 191 TGEGLVRHIMTRVG-----------FKTGEVMVVLVINGRN--IPSQKKLVDRLVKEIPE 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
I SV N T NVI G+ + G + +G +++P SF Q N
Sbjct: 238 ----------IKSVVLNVNTKRTNVILGDENIVVYGRDTITDYIGEFKFNISPLSFFQVN 287
Query: 282 TRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
++L RK Y +V DLY G G I L L ++K + + VE+ E
Sbjct: 288 PVQTEVLYRKALDYAQLTGKETVFDLYCGIGTISLFL--SKKAKRIYGVEV-------VE 338
Query: 340 KTVSRLPKSVDGNISWHNAD-NSIEPLSWLVG---------------SDVLVVDPPRKGL 383
V +W NA N +E ++VG +DV+VVDPPRKG
Sbjct: 339 AAVKD---------AWENAKVNGVENAEFIVGEAEKVIPEMYEKGVRADVVVVDPPRKGC 389
Query: 384 DSSLVHAL 391
D +++ L
Sbjct: 390 DEAVLKTL 397
>gi|402562586|ref|YP_006605310.1| tRNA (Uracil-5-)-methyltransferase [Bacillus thuringiensis HD-771]
gi|401791238|gb|AFQ17277.1| tRNA (Uracil-5-)-methyltransferase [Bacillus thuringiensis HD-771]
Length = 458
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIVEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 293 PEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVLEAIEDANRN 352
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 353 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|256003527|ref|ZP_05428517.1| RNA methyltransferase, TrmA family [Clostridium thermocellum DSM
2360]
gi|281418309|ref|ZP_06249329.1| RNA methyltransferase, TrmA family [Clostridium thermocellum JW20]
gi|385779725|ref|YP_005688890.1| TrmA family RNA methyltransferase [Clostridium thermocellum DSM
1313]
gi|419722395|ref|ZP_14249539.1| RNA methyltransferase, TrmA family [Clostridium thermocellum AD2]
gi|419725901|ref|ZP_14252935.1| RNA methyltransferase, TrmA family [Clostridium thermocellum YS]
gi|255992551|gb|EEU02643.1| RNA methyltransferase, TrmA family [Clostridium thermocellum DSM
2360]
gi|281409711|gb|EFB39969.1| RNA methyltransferase, TrmA family [Clostridium thermocellum JW20]
gi|316941405|gb|ADU75439.1| RNA methyltransferase, TrmA family [Clostridium thermocellum DSM
1313]
gi|380770677|gb|EIC04563.1| RNA methyltransferase, TrmA family [Clostridium thermocellum YS]
gi|380781580|gb|EIC11234.1| RNA methyltransferase, TrmA family [Clostridium thermocellum AD2]
Length = 455
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 93/368 (25%), Positives = 156/368 (42%), Gaps = 74/368 (20%)
Query: 54 CPHFQSCSGCT-----HEFNLH-RPIIVDEATDFFKSIGLLD--FTFDSCRL---YGWRC 102
CP ++ C GC+ +E +L + +V E+ + IG L+ D+ + +R
Sbjct: 74 CPSYKRCGGCSLQHMNYEASLRFKTNVVRES---IRRIGGLENVVVHDTVGMEQPVNYRN 130
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A+ + G Y + +H ++D C H + ++++ I++ N+ YDE
Sbjct: 131 KAQYPIGRYKDGIRAGFYAKRSHEIIDCATCTIQHSVSDRVRAVVKEYIEKNNISTYDEI 190
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G +R++ V ++ G+V + LV N RN P+ KL + L + +
Sbjct: 191 TGEGLVRHIMTRVG-----------FKTGEVMVVLVINGRN--IPSQKKLVDRLVKEIPE 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
I SV N T NVI G+ + G + +G +++P SF Q N
Sbjct: 238 ----------IKSVVLNVNTKRTNVILGDENIVVYGRDTITDYIGEFKFNISPLSFFQVN 287
Query: 282 TRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
++L RK Y +V DLY G G I L L ++K + + VE+ E
Sbjct: 288 PVQTEVLYRKALDYAQLTGKETVFDLYCGIGTISLFL--SKKAKRIYGVEV-------VE 338
Query: 340 KTVSRLPKSVDGNISWHNAD-NSIEPLSWLVG---------------SDVLVVDPPRKGL 383
V +W NA N +E ++VG +DV+VVDPPRKG
Sbjct: 339 AAVKD---------AWENAKVNGVENAEFIVGEAEKVIPEMYEKGVRADVVVVDPPRKGC 389
Query: 384 DSSLVHAL 391
D +++ L
Sbjct: 390 DEAVLKTL 397
>gi|401683584|ref|ZP_10815470.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
BS35b]
gi|400187662|gb|EJO21856.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
BS35b]
Length = 452
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 140/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ V +LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGILETGFFRKNSHDLMPLEDFFIQDPVIDQVVVVLRDLLRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVILVTTR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG W+ L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDRNTNAIFGKEWKTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELREDDVVIDAYSGIGTIGLSV--AKHVKEVYGVEVIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K V+ L + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 342 SQKNVA-LNNITNARYVCDTAENAMK--NWLKEGIQPSVILVDPPRKGLTESFIEASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|227509977|ref|ZP_03940026.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
brevis subsp. gravesensis ATCC 27305]
gi|227190583|gb|EEI70650.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
brevis subsp. gravesensis ATCC 27305]
Length = 456
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 136/301 (45%), Gaps = 36/301 (11%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
Y +R +A++ VR + G Y++ +H++V I P I+ AV ++R +++ +
Sbjct: 127 YHYRNKAQIPVRMLNGRLQTGFYRKHSHDLVPIEDFYIQDPEIDKAVVIVRDILRKFQIT 186
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
PYDE G +R + + Y+ + I L+ S+ KL S AE
Sbjct: 187 PYDEQTHRGVIRNIMVRRGHYSHEM-----------MIVLITKSK--------KLPSEAE 227
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
+ + S+ N N + GN+ + L G+ + + G+D ++P+SF
Sbjct: 228 IISETVNQLPE---VKSIVQNINPKNTNSLMGNQNKVLWGKGTITDQLMGLDFEISPNSF 284
Query: 278 GQAN----TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
Q N + + + ++K Q + V D Y G G I LSLA + V VEI E
Sbjct: 285 YQVNPIQTEKLYKLAIQKAQ--LNKDDIVIDAYCGIGTISLSLAKV--VKKVYGVEIVPE 340
Query: 334 SQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHA 390
+ + K + + K + + A+ + W + DV+VVDPPRKGLD SL+ +
Sbjct: 341 A-IEDAKRNAHINKISNCKVVVAKAEEQLG--KWQKAGLKPDVIVVDPPRKGLDESLIES 397
Query: 391 L 391
+
Sbjct: 398 V 398
>gi|417917757|ref|ZP_12561316.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
parasanguinis SK236]
gi|342830394|gb|EGU64733.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
parasanguinis SK236]
Length = 451
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 139/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ I P I+ V LR I+ +++PY
Sbjct: 126 YRNKAQVPVRRVNGQVETGFFRKNSHDLMPIEDFYIQDPVIDQVVLALRDLIRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E L
Sbjct: 186 DEKEQSGLIR-----------NLVIRRGHHSGEIMVILVTTR-----PKVFRVDQLIEQL 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ + I SV N N IFG WR L G+ + + G ++ +F Q
Sbjct: 230 IKQFPA------IKSVMQNINDQNTNAIFGKEWRLLYGQDYITDQMLGNSFQISGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + A V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFANLRAEDIVIDAYSGIGTIGLSV--AKHVKEVYGVEVIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K S L + + A+N+++ +WL + ++VDPPRKGL S + A
Sbjct: 342 SQKNAS-LNGISNAHYVCDTAENAMK--NWLKEGIQPTAILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|392990009|ref|YP_006488602.1| RNA methyltransferase [Enterococcus hirae ATCC 9790]
gi|392337429|gb|AFM71711.1| RNA methyltransferase [Enterococcus hirae ATCC 9790]
Length = 465
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/358 (22%), Positives = 159/358 (44%), Gaps = 50/358 (13%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRC 102
CP + C GC + + + +++ +A + FK G + T + +R
Sbjct: 76 CPVYYECGGCQLQHLAYQAQLDFKKDLLM-QALEKFKPAGFRSYKLRPTIGMEEPWHYRN 134
Query: 103 RAKLAVRGTSTSPLI--GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYD 160
+A+ +R + I GLYQ +H +V + C P+ + + + + + ++ YD
Sbjct: 135 KAQFQLRKNKKTQQIEAGLYQANSHELVPLIDCLVQEPQTQKVMNTVVELLNKYDLPIYD 194
Query: 161 EDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLW 220
E +G R + + V + G++Q+ V+ +R++K P + +
Sbjct: 195 ERSNSGIFRTIMVRVGI-----------KTGELQV--VFITRSQKFPQKNAI-------I 234
Query: 221 RNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQA 280
R+ + E + S+ N Q + +++ G+ HL G+ E++ + L+P +F Q
Sbjct: 235 RDINQQLPE--VVSIMQNVQPAKTSLVMGDETIHLWGKDAIEEHLNEVTFDLSPRAFFQL 292
Query: 281 NTRAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSF 338
N + ++L + K + ++ D Y G G IGLS+A ++ R ++ +++ ++
Sbjct: 293 NPQQTEVLYNEGIKALAIQPNETIVDAYCGVGTIGLSVA--KQAREIRGMDVIPQAIDDA 350
Query: 339 EKTVSRLPKSVDGNISWHNADNSIEPL--SWL---VGSDVLVVDPPRKGLDSSLVHAL 391
K RL G + H + E L WL D ++VDPPR GLD L+ ++
Sbjct: 351 RKNAQRL-----GYTNTHYEVGTAEELLPKWLEEGFEPDGIIVDPPRTGLDPQLIQSI 403
>gi|418975219|ref|ZP_13523128.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
SK1074]
gi|383348590|gb|EID26549.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
SK1074]
Length = 452
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/302 (24%), Positives = 140/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ + LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGILETGFFRKNSHDLMPLEDFFIQDPVIDQVIVALRDLLRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P ++E L E L
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVILVTTR-----PKIFRVEQLIEHL 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG W+ L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWKTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT+ + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTQMAEKLYQTAINFAELKKDDVVIDAYSGIGTIGLSV--AKHVKEVYGVEVIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K + + + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 342 SKKNAA-INNITNAHYVCDTAENAMK--NWLREGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|422422456|ref|ZP_16499409.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria seeligeri FSL
S4-171]
gi|313637426|gb|EFS02888.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria seeligeri FSL
S4-171]
Length = 453
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 86/362 (23%), Positives = 153/362 (42%), Gaps = 58/362 (16%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKL 106
C + C GC+ + + ++ + K IG L+ T + +R ++++
Sbjct: 76 CAVYSKCGGCSLQHLSYVGQLAFKRNQVEETMKRIGKLNVEVKETLGMENPWRYRNKSQV 135
Query: 107 AVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTG 166
V + G YQ+ +H ++D+ C + + AV+ R+ + + EPYDE G
Sbjct: 136 PVGFVNGKLTAGFYQKRSHEIIDMSTCLIQSEQGDFAVQKTREVLAKYGTEPYDEKTGKG 195
Query: 167 DLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRNGGS 225
D+R++ R+ + Q+ LV + ++ P +++ L E L
Sbjct: 196 DIRHIMT-------------RFAHTTGQLMLVLVTTKDRLPFKEEIIRDLTEQLA----- 237
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
+ S+ N NVIFG+R + L G+ + + GI +++ SF Q N
Sbjct: 238 ------LTSIVQNINPQKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPLQT 291
Query: 286 DILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
++L ++ + +V D Y G G I L L A+K + V VEI V
Sbjct: 292 EVLYQQAIEAAELTGEETVIDAYCGIGSISLCL--AKKAKHVYGVEI-----------VD 338
Query: 344 RLPKSVDGNISWHNADNS---------IEPLSWLVG--SDVLVVDPPRKGLDSSLVHALQ 392
+ + N +N N+ + P + G +DVLVVDPPRKG D L+ +
Sbjct: 339 QAIQDARANAELNNLSNTTFETGKAEEVIPTWYKAGIVADVLVVDPPRKGCDEKLLQTIL 398
Query: 393 SI 394
++
Sbjct: 399 AM 400
>gi|288555150|ref|YP_003427085.1| RNA methyltransferase [Bacillus pseudofirmus OF4]
gi|288546310|gb|ADC50193.1| RNA methyltransferase [Bacillus pseudofirmus OF4]
Length = 471
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/370 (23%), Positives = 148/370 (40%), Gaps = 70/370 (18%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIV----------DEATDFFKSIGLLDFTFDSCRLYGWRCR 103
CP + C GC + ++ +V + T ++ T + +R +
Sbjct: 90 CPIYDQCGGCQLQHMEYQATLVSKQDIIRQAFERHTKLNMEKQVIQPTIGMEDPWYYRNK 149
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
++L V + GLY +H V+D+ C H N +++Q + +LNV YDE
Sbjct: 150 SQLQVAKKGGRVIAGLYAMNSHKVIDLSACMVQHKATNKVTRVMKQILSDLNVSIYDERK 209
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNG 223
TG +R + V + G VQ+ LV N + + P + L + E
Sbjct: 210 HTGLIRTIVTRVG-----------FETGHVQVVLVTNEK--EIPRQNVL--IEEI----- 249
Query: 224 GSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTR 283
+ R ++S+ N + ++IFG HL GE E +G I L+ +F Q N
Sbjct: 250 --KKRLPEVNSLMQNINGNKTSLIFGEETVHLDGEEVIEEKLGDISFELSARAFFQLNPI 307
Query: 284 AFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLA-AARKCRSVKCVEINKESQLSFEK 340
L + ++ + V D Y G G IGL LA A + R + +E +
Sbjct: 308 QTVKLYNEAKRAAKLTGTEKVVDAYCGVGTIGLWLADGAEEVRGMDVIEAS--------- 358
Query: 341 TVSRLPKSVDGNISWHNAD-NSIEPLSWLVGS---------------DVLVVDPPRKGLD 384
+D + NAD + + ++ VG+ DV++VDPPR G D
Sbjct: 359 -------IIDARV---NADKHGYDHFTYEVGTAEEWLPKWVKEGWKPDVVIVDPPRTGCD 408
Query: 385 SSLVHALQSI 394
+L+ + +
Sbjct: 409 ETLLRTITGV 418
>gi|423398726|ref|ZP_17375927.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG2X1-1]
gi|401646671|gb|EJS64291.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG2X1-1]
Length = 458
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L+ + +R
Sbjct: 78 ECPVYNECGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLNDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG+ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNTKRTNVIFGDTTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 293 PEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 352
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 353 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|29377186|ref|NP_816340.1| RNA methyltransferase [Enterococcus faecalis V583]
gi|227554196|ref|ZP_03984243.1| tRNA (uracil-5-)-methyltransferase, partial [Enterococcus faecalis
HH22]
gi|257090896|ref|ZP_05585257.1| tRNA (uracil-5-)-methyltransferase trmA [Enterococcus faecalis
CH188]
gi|257420102|ref|ZP_05597096.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis T11]
gi|312902534|ref|ZP_07761740.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0635]
gi|422714799|ref|ZP_16771525.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0309A]
gi|422717937|ref|ZP_16774610.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0309B]
gi|50401756|sp|Q830R6.1|Y2706_ENTFA RecName: Full=Uncharacterized RNA methyltransferase EF_2706
gi|29344652|gb|AAO82410.1| RNA methyltransferase, TrmA family [Enterococcus faecalis V583]
gi|227176695|gb|EEI57667.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis HH22]
gi|256999708|gb|EEU86228.1| tRNA (uracil-5-)-methyltransferase trmA [Enterococcus faecalis
CH188]
gi|257161930|gb|EEU91890.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis T11]
gi|310634204|gb|EFQ17487.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0635]
gi|315573827|gb|EFU86018.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0309B]
gi|315580263|gb|EFU92454.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0309A]
Length = 456
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/361 (23%), Positives = 148/361 (40%), Gaps = 58/361 (16%)
Query: 54 CPHFQSCSGCTHEFNLHRPII------VDEATDFFKSIGLLDF----TFDSCRLYGWRCR 103
CP +++C GC + ++ + + +A + FK ++ T + +R +
Sbjct: 76 CPVYETCGGCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMDNPWNYRNK 135
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A+ +R GLYQ +H +V I +C P + L + + + YDE
Sbjct: 136 AQFQLRQIDGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERK 195
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-----ESLAEF 218
+G R + + V + G+VQ+ + ++++K P +K+ E L E
Sbjct: 196 NSGIFRTLMVRVGI-----------QTGEVQVVFI--TQSQKFPQKEKMVRAINEQLPEV 242
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ S+ N Q +++ G+ HL G+ E++ + L+P +F
Sbjct: 243 V--------------SIMQNVQNKKTSLVMGDDTLHLWGKESIEEHINDVVFDLSPRAFF 288
Query: 279 QANTRAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAA-ARKCRSVKCVEINKESQ 335
Q N ++L + K + +V D Y G G IGLSLA A + R + + +
Sbjct: 289 QLNPEQTEVLYNEGIKALDLQPNETVVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDD- 347
Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWL---VGSDVLVVDPPRKGLDSSLVHA 390
+R G + H A + E L W D +VVDPPR GLD L+ A
Sbjct: 348 -------ARFNAKRLGVTNTHYAVGTAEDLLPKWFKEGFKPDAIVVDPPRTGLDRKLLTA 400
Query: 391 L 391
L
Sbjct: 401 L 401
>gi|445389011|ref|ZP_21428125.1| TrmA family tRNA methyltransferase [Streptococcus thermophilus MTCC
5461]
gi|444750464|gb|ELW75271.1| TrmA family tRNA methyltransferase [Streptococcus thermophilus MTCC
5461]
Length = 453
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 89/366 (24%), Positives = 160/366 (43%), Gaps = 49/366 (13%)
Query: 64 THEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGL 119
T + R +VD + +K+ G+ D T Y +R +A++ VR G
Sbjct: 89 TEQLKFKRKQVVD---NLYKTAGISDVEVAETLGMETPYAYRNKAQVPVRRVKGQLETGF 145
Query: 120 YQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYN 179
Y++ +H+++ I I+ + +R ++ +++PYDE ++TG +R++ + Y+
Sbjct: 146 YRKNSHDLIPIEDFLIQDKEIDKLIVFVRDLLRRYDLKPYDEKEQTGLIRHLVVRRGHYS 205
Query: 180 TSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHY--IHSVWA 237
Q+ LV+ + K D++ + + E + I S+
Sbjct: 206 G-------------QMMLVFVTTKPKVFRIDQVIA-----------KITEAFPSIVSIIQ 241
Query: 238 NFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVP 297
N N IFG +R L G+ + + G D ++ SF Q NT + L + +
Sbjct: 242 NINDKNTNAIFGKEFRTLYGQDTITDRMLGNDYEISAQSFYQVNTEMAEKLYQIAIDFSD 301
Query: 298 YGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISW 355
+ V D Y+G G IGLS A++ + V VE+ + + +K R +G +
Sbjct: 302 LNSDSIVIDAYSGIGTIGLSF--AKQVKKVYGVEVIETAVEDAKKNAER-----NGITNA 354
Query: 356 HNADNSIE--PLSWL---VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSS 410
H NS E W + DV++VDPPRKGL S + A S+ K +S + ++
Sbjct: 355 HYVANSAENAMAKWSQDGIKPDVIIVDPPRKGLTESFIKA--SVAMQPEKITYVSCNPAT 412
Query: 411 MVKEEK 416
M ++ K
Sbjct: 413 MARDIK 418
>gi|241889868|ref|ZP_04777166.1| 23S rRNA-methyltransferase RumA [Gemella haemolysans ATCC 10379]
gi|241863490|gb|EER67874.1| 23S rRNA-methyltransferase RumA [Gemella haemolysans ATCC 10379]
Length = 446
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 136/315 (43%), Gaps = 59/315 (18%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
Y +R ++ + V+ + +G Y+ +H+VV+I C + N + LR I ELN+
Sbjct: 119 YHYRNKSVIPVQKVNGEVKMGYYKPRSHDVVNIEKCFIQYDEHNVLMNKLRSLISELNLS 178
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
YDE+ +G +R++ T + ++ + +V +K L E
Sbjct: 179 VYDENSHSGAIRHIMFRTNTLKS-----------EIMVGIVA---------KEKFNKLDE 218
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
F+ + R I S+ N NVIFG++ +L G+ + + GID ++ SF
Sbjct: 219 FVEKISKLDDR---IVSIMLNINDKKTNVIFGDKTENLFGKDYITDTLDGIDFKISLRSF 275
Query: 278 GQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q N ++L K + ++ D Y G G I SL AA+K + V +EI + +
Sbjct: 276 YQVNPVQTEVLYSKALELAELKETDTIIDAYCGIGTI--SLFAAKKVKKVYGIEIVEAAV 333
Query: 336 LSFEKTVSRLPKSVDGNISWHNA-DNSIEPLSWLVGS---------------DVLVVDPP 379
L + NA +N+I + +L+G D ++VDPP
Sbjct: 334 LD----------------ACENAKNNNITNVEFLLGKSEDVIKKLISQDVKLDAVIVDPP 377
Query: 380 RKGLDSSLVHALQSI 394
RKG + S + L ++
Sbjct: 378 RKGCEESFLRDLAAM 392
>gi|386039528|ref|YP_005958482.1| RNA methyltransferase [Paenibacillus polymyxa M1]
gi|343095566|emb|CCC83775.1| RNA methyltransferase [Paenibacillus polymyxa M1]
Length = 537
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 135/300 (45%), Gaps = 36/300 (12%)
Query: 100 WRCRAKLAV-RGTSTSPLIG-LYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
WR R K V G + L+G Y G+H +VD+ C R + V +++ + L +
Sbjct: 209 WRYRNKAQVPIGVAEGGLVGGFYARGSHRIVDMNTCLIQDERNDEVVARVKEIGRMLGIS 268
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
Y+E+ G LR+V + +R G++ + LV N R+ P++D
Sbjct: 269 AYNEETGRGLLRHVVVKTA-----------FRTGEMMLVLVTNGRD--IPHADA------ 309
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
W G R ++ S+ N T NVIFG+ R L G ++ +G + +++ SF
Sbjct: 310 --W-IGSIREHIPHVASICQNVNTKRTNVIFGDETRVLWGRDVIYDYIGNVQFAISARSF 366
Query: 278 GQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q N ++L K +Y +V D Y G G I L L A+ V VEI KE
Sbjct: 367 YQVNPVQTEVLYSKTVEYAGLTGKETVIDAYCGIGTISLFL--AQHADQVYGVEIVKE-- 422
Query: 336 LSFEKTVSRLPKSVDGNISWH-NADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ + S + N+ + A + P +W + +DV+VVDPPRKG D L+ +
Sbjct: 423 -AIDDARSNALLNEMRNVKFEVGASEDVIP-AWKEQGITADVIVVDPPRKGCDPRLLDTI 480
>gi|422419368|ref|ZP_16496323.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria seeligeri FSL
N1-067]
gi|313632848|gb|EFR99799.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria seeligeri FSL
N1-067]
Length = 453
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 86/362 (23%), Positives = 153/362 (42%), Gaps = 58/362 (16%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKL 106
C + C GC+ + + ++ + K IG L+ T + +R ++++
Sbjct: 76 CAVYSKCGGCSLQHLSYVGQLAFKRNQVEETMKRIGKLNVEVKETLGMENPWRYRNKSQV 135
Query: 107 AVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTG 166
V + G YQ+ +H ++D+ C + + AV+ R+ + + EPYDE G
Sbjct: 136 PVGFVNGKLTAGFYQKRSHEIIDMSTCLIQSEQGDFAVQKTREVLAKYGTEPYDEKTGKG 195
Query: 167 DLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRNGGS 225
D+R++ R+ + Q+ LV + ++ P +++ L E L
Sbjct: 196 DIRHIMT-------------RFAHTTGQLMLVLVTTKDRLPFKEEIIRDLTEQLA----- 237
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
+ S+ N NVIFG+R + L G+ + + GI +++ SF Q N
Sbjct: 238 ------LTSIVQNINPQKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPLQT 291
Query: 286 DILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
++L ++ + +V D Y G G I L L A+K + V VEI V
Sbjct: 292 EVLYQQAIEAAELTGEETVIDAYCGIGSISLCL--AKKAKHVYGVEI-----------VD 338
Query: 344 RLPKSVDGNISWHNADNS---------IEPLSWLVG--SDVLVVDPPRKGLDSSLVHALQ 392
+ + N +N N+ + P + G +DVLVVDPPRKG D L+ +
Sbjct: 339 QAIQDARANAELNNLSNTTFETGKAEEVIPTWYKAGIVADVLVVDPPRKGCDEKLLQTIL 398
Query: 393 SI 394
++
Sbjct: 399 AM 400
>gi|419782653|ref|ZP_14308451.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
SK610]
gi|383182866|gb|EIC75414.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
SK610]
Length = 452
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 138/302 (45%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFFIQDPIIDQVVVALRDLLRRYDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P ++E L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHHSGQIMVILVTTR-----PKVFRVEQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG W L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWHTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKEDDVVIDAYSGIGTIGLSV--AKHVKEVYGVEVIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K S L K + + A+N+++ WL + +++VDPPRKGL S + A
Sbjct: 342 SQKNAS-LNKITNAHYVCDTAENAMK--KWLKEGIQPSLILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|307276947|ref|ZP_07558057.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX2134]
gi|306506370|gb|EFM75530.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX2134]
Length = 456
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/361 (23%), Positives = 148/361 (40%), Gaps = 58/361 (16%)
Query: 54 CPHFQSCSGCTHEFNLHRPII------VDEATDFFKSIGLLDF----TFDSCRLYGWRCR 103
CP +++C GC + ++ + + +A + FK ++ T + +R +
Sbjct: 76 CPVYETCGGCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMENPWNYRNK 135
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A+ +R GLYQ +H +V I +C P + L + + + YDE
Sbjct: 136 AQFQLRQIDGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERK 195
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-----ESLAEF 218
+G R + + V + G+VQ+ + ++++K P +K+ E L E
Sbjct: 196 NSGIFRTLMVRVGI-----------QTGEVQVVFI--TQSQKFPQKEKMVRAINEQLPEV 242
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ S+ N Q +++ G+ HL G+ E++ + L+P +F
Sbjct: 243 V--------------SIMQNVQNKKTSLVMGDDTLHLWGKESIEEHINDVVFDLSPRAFF 288
Query: 279 QANTRAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAA-ARKCRSVKCVEINKESQ 335
Q N ++L + K + +V D Y G G IGLSLA A + R + + +
Sbjct: 289 QLNPEQTEVLYNEGIKALDLQPNETVVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDD- 347
Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWL---VGSDVLVVDPPRKGLDSSLVHA 390
+R G + H A + E L W D +VVDPPR GLD L+ A
Sbjct: 348 -------ARFNAKRLGVTNTHYAVGTAEDLLPKWFKEGFKPDAIVVDPPRTGLDRKLLTA 400
Query: 391 L 391
L
Sbjct: 401 L 401
>gi|270292705|ref|ZP_06198916.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
M143]
gi|270278684|gb|EFA24530.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
M143]
Length = 455
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 140/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFFIQDPVIDQVVVALRNLLRRYDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P ++E L E L
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHFSGQIMVILVTTR-----PKVFRIEQLIEQL 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG W+ L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWKTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT+ + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTQMAEKLYQTAIDFAELREDDVVIDAYSGIGTIGLSV--AKHVKEVYGVEVIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K + L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 342 SKKNAA-LNNITNAHYVCDTAENAMK--NWLKEGIQPTVILVDPPRKGLTESFIKASSQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|255974885|ref|ZP_05425471.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T2]
gi|256616789|ref|ZP_05473635.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis ATCC
4200]
gi|256854009|ref|ZP_05559374.1| RNA methyltransferase [Enterococcus faecalis T8]
gi|256961043|ref|ZP_05565214.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis
Merz96]
gi|257081727|ref|ZP_05576088.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis E1Sol]
gi|293384567|ref|ZP_06630433.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
R712]
gi|293386796|ref|ZP_06631367.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
S613]
gi|307278742|ref|ZP_07559809.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0860]
gi|307290285|ref|ZP_07570201.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0411]
gi|312906393|ref|ZP_07765401.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
DAPTO 512]
gi|312979448|ref|ZP_07791136.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
DAPTO 516]
gi|421513862|ref|ZP_15960607.1| RNA methyltransferase, TrmA family [Enterococcus faecalis ATCC
29212]
gi|421514604|ref|ZP_15961292.1| RNA methyltransferase, TrmA family [Enterococcus faecalis ATCC
29212]
gi|422684858|ref|ZP_16743083.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX4000]
gi|422701112|ref|ZP_16758953.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1342]
gi|422720110|ref|ZP_16776733.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0017]
gi|255967757|gb|EET98379.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T2]
gi|256596316|gb|EEU15492.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis ATCC
4200]
gi|256710952|gb|EEU25995.1| RNA methyltransferase [Enterococcus faecalis T8]
gi|256951539|gb|EEU68171.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis
Merz96]
gi|256989757|gb|EEU77059.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis E1Sol]
gi|291078113|gb|EFE15477.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
R712]
gi|291083799|gb|EFE20762.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
S613]
gi|306498706|gb|EFM68207.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0411]
gi|306504603|gb|EFM73806.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0860]
gi|310627547|gb|EFQ10830.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
DAPTO 512]
gi|311287819|gb|EFQ66375.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
DAPTO 516]
gi|315030469|gb|EFT42401.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX4000]
gi|315032560|gb|EFT44492.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0017]
gi|315170491|gb|EFU14508.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1342]
gi|401672392|gb|EJS78862.1| RNA methyltransferase, TrmA family [Enterococcus faecalis ATCC
29212]
gi|401673043|gb|EJS79456.1| RNA methyltransferase, TrmA family [Enterococcus faecalis ATCC
29212]
Length = 456
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/361 (23%), Positives = 148/361 (40%), Gaps = 58/361 (16%)
Query: 54 CPHFQSCSGCTHEFNLHRPII------VDEATDFFKSIGLLDF----TFDSCRLYGWRCR 103
CP +++C GC + ++ + + +A + FK ++ T + +R +
Sbjct: 76 CPVYETCGGCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMENPWNYRNK 135
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A+ +R GLYQ +H +V I +C P + L + + + YDE
Sbjct: 136 AQFQLRQIDGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERK 195
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-----ESLAEF 218
+G R + + V + G+VQ+ + ++++K P +K+ E L E
Sbjct: 196 NSGIFRTLMVRVGI-----------QTGEVQVVFI--TQSQKFPQKEKMVRAINEQLPEV 242
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ S+ N Q +++ G+ HL G+ E++ + L+P +F
Sbjct: 243 V--------------SIMQNVQNKKTSLVMGDDTLHLWGKESIEEHINDVVFDLSPRAFF 288
Query: 279 QANTRAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAA-ARKCRSVKCVEINKESQ 335
Q N ++L + K + +V D Y G G IGLSLA A + R + + +
Sbjct: 289 QLNPEQTEVLYNEGIKALDLQPNETVVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDD- 347
Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWL---VGSDVLVVDPPRKGLDSSLVHA 390
+R G + H A + E L W D +VVDPPR GLD L+ A
Sbjct: 348 -------ARFNAKRLGVTNTHYAVGTAEDLLPKWFKEGFKPDAIVVDPPRTGLDRKLLTA 400
Query: 391 L 391
L
Sbjct: 401 L 401
>gi|403381112|ref|ZP_10923169.1| TrmA family RNA methyltransferase [Paenibacillus sp. JC66]
Length = 635
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 95/357 (26%), Positives = 152/357 (42%), Gaps = 52/357 (14%)
Query: 54 CPHFQSCSGC-----THEFNLH-RPIIVDEATDFFKSIGLLDFTFDSCRLYGW--RCRAK 105
CP ++ C GC T+ L + ++ EA + I L + W R +A+
Sbjct: 254 CPVYERCGGCQLQHMTYAAQLQAKEELLREAFRRYAKIEDLPLRPIAGMEEPWNYRNKAQ 313
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
L V + GLY+ +H +V+I C HP +N ++ + + EL + PY+E R
Sbjct: 314 LPVGWEGGRMIAGLYEADSHKLVNISGCPIQHPVVNEVMDQAVRLLTELGIPPYEERKRR 373
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRNGG 224
G ++ + V + Q+ L + + ++ P+ +KL E + E L
Sbjct: 374 GVIKTIVARVGQASQ-------------QVQLTFITAGQELPHREKLIERIRETL----- 415
Query: 225 SRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRA 284
+ S+ N S +FG+ + L GE E +G + SL+P +F Q N
Sbjct: 416 -----PAVVSIAQNVNDSATPAVFGSDTQILWGEEQLEETLGDVHFSLSPRAFFQLNPSQ 470
Query: 285 FDILLRKLQKYVPYGAS------VTDLYAGAGVIGLSLAAARKCRSVKCVEINKES-QLS 337
KL YV AS V D Y G G IGL LA R V+ +E+ E+ Q +
Sbjct: 471 ----TVKLYDYVKEAASLKGTELVVDAYCGTGTIGLWLAP--DAREVRGIEVVAEAVQDA 524
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ S V+ + + P W+ + DVLVVDPPR G + L+ A+
Sbjct: 525 RDNARS---SGVENAEFYEGRAEKLLP-EWVKRGIRPDVLVVDPPRTGCERPLLEAI 577
>gi|384178260|ref|YP_005564022.1| RNA methyltransferase, TrmA family protein [Bacillus thuringiensis
serovar finitimus YBT-020]
gi|324324344|gb|ADY19604.1| RNA methyltransferase, TrmA family protein [Bacillus thuringiensis
serovar finitimus YBT-020]
Length = 459
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQKVKRICEKHGISAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----TKFPEVKSIVQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ + K
Sbjct: 293 PEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEA-IEDAKR 351
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 352 NAALNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|312900072|ref|ZP_07759389.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0470]
gi|311292829|gb|EFQ71385.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0470]
Length = 456
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/361 (23%), Positives = 148/361 (40%), Gaps = 58/361 (16%)
Query: 54 CPHFQSCSGCTHEFNLHRPII------VDEATDFFKSIGLLDF----TFDSCRLYGWRCR 103
CP +++C GC + ++ + + +A + FK ++ T + +R +
Sbjct: 76 CPVYETCGGCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMENPWNYRNK 135
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A+ +R GLYQ +H +V I +C P + L + + + YDE
Sbjct: 136 AQFQLRQIDGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERK 195
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-----ESLAEF 218
+G R + + V + G+VQ+ + ++++K P +K+ E L E
Sbjct: 196 NSGIFRTLMVRVGI-----------QTGEVQVVFI--TQSQKFPQKEKMVRAINEQLPEV 242
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ S+ N Q +++ G+ HL G+ E++ + L+P +F
Sbjct: 243 V--------------SIMQNVQNKKTSLVMGDDTLHLWGKESIEEHINDVVFDLSPRAFF 288
Query: 279 QANTRAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAA-ARKCRSVKCVEINKESQ 335
Q N ++L + K + +V D Y G G IGLSLA A + R + + +
Sbjct: 289 QLNPEQTEVLYNEGIKALDLQPNETVVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDD- 347
Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWL---VGSDVLVVDPPRKGLDSSLVHA 390
+R G + H A + E L W D +VVDPPR GLD L+ A
Sbjct: 348 -------ARFNAKRLGVTNTHYAVGTAEDLLPKWFKEGFKPDAIVVDPPRTGLDRKLLTA 400
Query: 391 L 391
L
Sbjct: 401 L 401
>gi|422731918|ref|ZP_16788266.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0645]
gi|422734461|ref|ZP_16790750.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1341]
gi|315162126|gb|EFU06143.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0645]
gi|315168692|gb|EFU12709.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1341]
Length = 456
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 86/361 (23%), Positives = 146/361 (40%), Gaps = 58/361 (16%)
Query: 54 CPHFQSCSGCTHEFNLHRPII------VDEATDFFKSIGLLDF----TFDSCRLYGWRCR 103
CP +++C GC + ++ + + +A + FK ++ T + +R +
Sbjct: 76 CPVYETCGGCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMENPWNYRNK 135
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A+ +R GLYQ +H +V I +C P + L + + + YDE
Sbjct: 136 AQFQLRQIDGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERK 195
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-----ESLAEF 218
+G R + + V + G+VQ+ + S+ K P +K+ E L E
Sbjct: 196 NSGIFRTLMVRVGI-----------QTGEVQVVFITQSK--KFPQKEKMVRAINEQLPEV 242
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ S+ N Q +++ G+ HL G+ E++ + L+P +F
Sbjct: 243 V--------------SIMQNVQNKKTSLVMGDDTLHLWGKESIEEHINDVVFDLSPRAFF 288
Query: 279 QANTRAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAA-ARKCRSVKCVEINKESQ 335
Q N ++L + K + +V D Y G G IGLSLA A + R + + +
Sbjct: 289 QLNPEQTEVLYNEGIKALDLQPNETVVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDD- 347
Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWL---VGSDVLVVDPPRKGLDSSLVHA 390
+R G + H A + E L W D +VVDPPR GLD L+ A
Sbjct: 348 -------ARFNAKRLGVTNTHYAVGTAEDLLPKWFKEGFKPDAIVVDPPRTGLDRKLLTA 400
Query: 391 L 391
L
Sbjct: 401 L 401
>gi|218233353|ref|YP_002365162.1| TrmA family RNA methyltransferase [Bacillus cereus B4264]
gi|218161310|gb|ACK61302.1| RNA methyltransferase, TrmA family [Bacillus cereus B4264]
Length = 454
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 154/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIG-LLDF----TFDSCRLYGWRC 102
+CP + C GC ++E L + D + IG L D + +R
Sbjct: 74 ECPVYNQCGGCQLQHLSYEGQLQAK--EKQVRDVMQRIGGLADVPVHPVLGMQNPWVYRN 131
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 132 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEE 191
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 192 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 233
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 234 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 288
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 289 PEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 348
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 349 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 398
>gi|423409631|ref|ZP_17386780.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG2X1-3]
gi|401654643|gb|EJS72183.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG2X1-3]
Length = 458
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L+ + +R
Sbjct: 78 ECPVYNECGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLNDVPVHPVLGMKTPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG+ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNTKRTNVIFGDTTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 293 PEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 352
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 353 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|148998851|ref|ZP_01826287.1| RNA methyltransferase, TrmA family protein [Streptococcus
pneumoniae SP11-BS70]
gi|307067795|ref|YP_003876761.1| SAM-dependent methyltransferase [Streptococcus pneumoniae AP200]
gi|387626379|ref|YP_006062554.1| putative RNA methyltransferase [Streptococcus pneumoniae INV104]
gi|421314199|ref|ZP_15764789.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47562]
gi|444383778|ref|ZP_21181960.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PCS8106]
gi|444386422|ref|ZP_21184479.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PCS8203]
gi|147755278|gb|EDK62329.1| RNA methyltransferase, TrmA family protein [Streptococcus
pneumoniae SP11-BS70]
gi|301794164|emb|CBW36574.1| putative RNA methyltransferase [Streptococcus pneumoniae INV104]
gi|306409332|gb|ADM84759.1| SAM-dependent methyltransferase [Streptococcus pneumoniae AP200]
gi|395914699|gb|EJH25543.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47562]
gi|444247765|gb|ELU54296.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PCS8203]
gi|444248432|gb|ELU54940.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PCS8106]
Length = 543
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 138/302 (45%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +HN++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVVLVTTR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG W L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWCTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGLSV--AKHVKEVYGVELIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K S L K + + A+N+++ WL + V++VDPPRKGL S + A
Sbjct: 342 SQKNAS-LNKITNAHYVCDTAENAMK--KWLKEGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|402554087|ref|YP_006595358.1| RNA methyltransferase, TrmA family protein [Bacillus cereus FRI-35]
gi|401795297|gb|AFQ09156.1| RNA methyltransferase, TrmA family protein [Bacillus cereus FRI-35]
Length = 458
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----TKFPEVKSIVQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ + K
Sbjct: 293 PEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEA-IEDAKR 351
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 352 NAALNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|228995690|ref|ZP_04155353.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock3-17]
gi|229003319|ref|ZP_04161149.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock1-4]
gi|228757937|gb|EEM07152.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock1-4]
gi|228764067|gb|EEM12951.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock3-17]
Length = 465
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 86/352 (24%), Positives = 153/352 (43%), Gaps = 40/352 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIG-LLDF----TFDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L D + +R
Sbjct: 85 ECPVYNQCGGCQLQHLTYEGQLKAK--EKQVRDVMQRIGGLHDVPVHPVLGMENPWVYRN 142
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C +A ++ +++ ++ + Y+E+
Sbjct: 143 KAQVPIGEREGGLVAGFYRQGTHDIINMETCLIQAEENDALIQEVKRICEKHGITAYNEE 202
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
G LR+V MA RY +I LV+ +R + PN + + N
Sbjct: 203 RHKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEITTKFPN 249
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ S+ N T NVIFG+ L G ++ +G I +++ SF Q N
Sbjct: 250 ---------VKSIVQNVNTKRTNVIFGDTTTVLYGSEYIYDFIGDIKFAISARSFYQVNR 300
Query: 283 RAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTV 342
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 301 EQTKVLYDKALEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNA 360
Query: 343 SRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + + A+ I +W V +D +VVDPPRKG D +L++ +
Sbjct: 361 A-LNNMTNAEFAVGEAEVVIP--NWYKEGVIADTIVVDPPRKGCDEALLNTI 409
>gi|229119979|ref|ZP_04249234.1| Uncharacterized RNA methyltransferase [Bacillus cereus 95/8201]
gi|228663445|gb|EEL19030.1| Uncharacterized RNA methyltransferase [Bacillus cereus 95/8201]
Length = 458
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ + K
Sbjct: 293 PEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFLAKKAKKVYGVEIVPEA-IEDAKR 351
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 352 NAALNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|421212875|ref|ZP_15669836.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2070108]
gi|395580462|gb|EJG40943.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2070108]
Length = 505
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 139/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +HN++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVVLVTTR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGLSV--AKHVKEVYGVELIPEA-VE 340
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
K ++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 341 NSKKNAQLNNISNAHYVCDTAENAMK--NWLKDGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|419534498|ref|ZP_14074001.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA17457]
gi|379565232|gb|EHZ30225.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA17457]
Length = 501
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 137/302 (45%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +HN++ + P I+ V LR + +++PY
Sbjct: 84 YRNKAQVPVRRVNGVLETGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLFRRFDLKPY 143
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE + +G +R +L + +G++ + LV P +++ L E +
Sbjct: 144 DEKEHSGLIR-----------NLVVRRGHYSGQIMVVLVTTR-----PKVFRVDQLIEQV 187
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 188 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQ 241
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 242 VNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGLSV--AKHVKEVYGVELIPEA-VE 298
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
K ++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 299 NSKKNAQLNNISNAHYVCDTAENAMK--NWLKDGIQPTVILVDPPRKGLTESFIKASAQT 356
Query: 395 GS 396
G+
Sbjct: 357 GA 358
>gi|118443042|ref|YP_877382.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium novyi NT]
gi|118133498|gb|ABK60542.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium novyi NT]
Length = 472
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 86/370 (23%), Positives = 159/370 (42%), Gaps = 56/370 (15%)
Query: 54 CPHFQSCSGCT-HEFNLHRPIIV--DEATDFFKSIGLLDFTFDSCRL------------- 97
C ++ C GC+ FN + + D + IG L+ + ++
Sbjct: 77 CDIYKRCGGCSIQHFNYKSQLEFKKNRVKDCLERIGKLEVSINNEETGNGCDENKGIILH 136
Query: 98 --------YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQ 149
Y +R + +L V + +G Y +H+++D+ C + V L++Q
Sbjct: 137 DTLGMKNPYRYRNKVQLPVGEENGEIKVGFYAPRSHDIIDMDICHIQDEVGDTIVSLIKQ 196
Query: 150 GIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNS 209
+K N++PY+E+ TG +R++ M +NT+ ++ +V +R + P+
Sbjct: 197 WMKTYNIKPYNEEKNTGIVRHI-MVRRGFNTN------------EVMIVLVTRTNELPHK 243
Query: 210 DKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGID 269
E L E + + + I S+ N + NVI G L G+ + +G
Sbjct: 244 ---EELVELILK------KIDGITSIVQNINSKKTNVILGLENITLYGKDYISDYIGEFK 294
Query: 270 ISLAPSSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAA-ARKCRSVK 326
+++P SF Q N ++L K +Y + V D Y G G I L L+ A+K V+
Sbjct: 295 FNISPLSFFQVNPIQTEVLYNKALEYAALTGNEVVFDAYCGTGTISLFLSKNAKKVYGVE 354
Query: 327 CVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LSWLVGSDVLVVDPPRKGLD 384
V+ E+ ++ +VD + P ++ + +DV+VVDPPRKG D
Sbjct: 355 IVDAAIENA-----KINAKENNVDNAEFIVGKSEEVIPNLINQGIKADVVVVDPPRKGCD 409
Query: 385 SSLVHALQSI 394
+L+ A+ ++
Sbjct: 410 KALLDAIGNM 419
>gi|406577047|ref|ZP_11052667.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
GMD6S]
gi|404460407|gb|EKA06673.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
GMD6S]
Length = 451
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 145/311 (46%), Gaps = 41/311 (13%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ + LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGILETGFFRKNSHDLMPLEDFFIQDPVIDQVIVALRDLLRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P ++E L E L
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVILVTTR-----PKIFRVEQLIEQL 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG W+ L G+ + + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDRNTNAIFGKEWKTLYGQDNITDQMLGNDYQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELREDDVVIDAYSGIGTIGLSV--AKHVKEVYGVEVIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWH----NADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHA 390
+K +++G + H A+N+++ +WL + +++VDPPRKGL S + A
Sbjct: 342 SKKNA-----AINGIANVHYVCDTAENAMK--NWLKEGIKQTLILVDPPRKGLTESFIEA 394
Query: 391 LQSIGSAERKA 401
GS ER A
Sbjct: 395 SSQTGS-ERIA 404
>gi|419497212|ref|ZP_14036922.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47522]
gi|379601205|gb|EHZ65981.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47522]
Length = 543
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 137/302 (45%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +HN++ + P I+ V LR + +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLKTGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLFRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE + +G +R +L + +G++ + LV P +++ L E +
Sbjct: 186 DEKEHSGLIR-----------NLVVRRGHYSGQIMVVLVTTR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGLSV--AKHVKEVYGVELIPEA-VE 340
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
K ++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 341 NSKKNAQLNNISNAHYVCDTAENAMK--NWLKDGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|42779444|ref|NP_976691.1| RNA methyltransferase [Bacillus cereus ATCC 10987]
gi|51316698|sp|Q73EJ5.1|Y363_BACC1 RecName: Full=Uncharacterized RNA methyltransferase BCE_0363
gi|42735360|gb|AAS39299.1| RNA methyltransferase, TrmA family [Bacillus cereus ATCC 10987]
Length = 460
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----TKFPEVKSIVQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ + K
Sbjct: 293 PEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEA-IEDAKR 351
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 352 NAALNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|418202296|ref|ZP_12838726.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA52306]
gi|419455426|ref|ZP_13995386.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae EU-NP04]
gi|421285161|ref|ZP_15735938.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA60190]
gi|421307296|ref|ZP_15757940.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA60132]
gi|353868099|gb|EHE47989.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA52306]
gi|379629883|gb|EHZ94477.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae EU-NP04]
gi|395887140|gb|EJG98155.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA60190]
gi|395907903|gb|EJH18788.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA60132]
Length = 543
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 139/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +HN++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVVLVTTR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNTNDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGLSV--AKHVKEVYGVELIPEA-VE 340
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
K ++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 341 NSKKNAQLNNISNAHYVCDTAENAMK--NWLKDGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|414157419|ref|ZP_11413719.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
F0442]
gi|410868735|gb|EKS16700.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
F0442]
Length = 451
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 140/306 (45%), Gaps = 40/306 (13%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ I P I+ V LR+ I+ +++PY
Sbjct: 126 YRNKAQVPVRRVNGQVETGFFRKNSHDLMPIEDFYIQDPVIDQVVLALRELIRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L + L
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHHSGEIMVILVTTR-----PKIFRVDQLIDQL 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G ++ +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRVLYGQDYITDQMMGNSFQISGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELSEDDVVIDAYSGIGTIGLSV--AKHVKGVYGVEVIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWH----NADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHA 390
+K S++G + H A+N+++ +WL V ++VDPPRKGL S + A
Sbjct: 342 SQKNA-----SINGITNAHYVCDTAENAMK--NWLKEGVQPTAILVDPPRKGLTESFIKA 394
Query: 391 LQSIGS 396
GS
Sbjct: 395 SAQTGS 400
>gi|312867756|ref|ZP_07727962.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
parasanguinis F0405]
gi|311096819|gb|EFQ55057.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
parasanguinis F0405]
Length = 452
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 140/306 (45%), Gaps = 40/306 (13%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ I P I+ + LR I+ +++PY
Sbjct: 126 YRNKAQVPVRRVNGQVETGFFRKNSHDLMPIEDFYIQDPVIDQVILALRDLIRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E L
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHHSGEIMVILVTTR-----PKVFRVDQLIEQL 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ + I SV N N IFG WR L G+ + + G ++ +F Q
Sbjct: 230 IKQFPA------IKSVMQNINDQNTNAIFGKEWRVLYGQDYITDQMLGNSFQISGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKEDDVVIDAYSGIGTIGLSV--AKHVKEVYGVEVIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWH----NADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHA 390
+K S++G + H A+N+++ +WL + ++VDPPRKGL S + A
Sbjct: 342 SQKNA-----SINGITNAHYVCDTAENAMK--NWLKEGIQPTAILVDPPRKGLTESFIKA 394
Query: 391 LQSIGS 396
G+
Sbjct: 395 SAQTGA 400
>gi|404482088|ref|ZP_11017316.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridiales
bacterium OBRC5-5]
gi|404344784|gb|EJZ71140.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridiales
bacterium OBRC5-5]
Length = 392
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/351 (22%), Positives = 150/351 (42%), Gaps = 41/351 (11%)
Query: 52 LQCPHFQSCSGCTH---EFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAV 108
L+C + C GC + +N H +D A K G D Y +R + AV
Sbjct: 16 LKCAVAKKCGGCDYINSSYNKHVKEKLDTANSLIKKYGKFDGIVSMSNPYHYRNKVS-AV 74
Query: 109 RGTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGD 167
G +I G Y++ +H VVD +C + + ++ +++ ++ YDED G
Sbjct: 75 FGFENKKIIAGTYEKNSHKVVDTKNCLIEDEKAGSIIQTIKKMCVSFKIKAYDEDSGFGF 134
Query: 168 LRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRS 227
LR+V + V ++G++ + LV + N PN + + R
Sbjct: 135 LRHVLIRVGK-----------KSGQIMVVLV--TSNVIFPNKNAFIKVL---------RG 172
Query: 228 REHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDI 287
I ++ N +++ G+R + G+ + + G+ ++P SF Q N +
Sbjct: 173 EHPEITTIVQNINNKNTSMVLGDREIVMYGKGYITDELCGLTFKISPKSFYQVNRDQTEK 232
Query: 288 LLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRL 345
L + +Y + D Y+G G IG L A++ + V VE+NK++ + ++
Sbjct: 233 LYSQAIEYAGLQGDELLLDAYSGIGTIG--LIASKSVKEVISVELNKDAH---KDAITNA 287
Query: 346 PKSVDGNISWHNAD-----NSIEPLSWLVGSDVLVVDPPRKGLDSSLVHAL 391
+ N+ ++NAD N + + + DV+++DPPR G + A+
Sbjct: 288 KINNIKNVKFYNADATAFINDLAAANEKI--DVVILDPPRTGSTEEFIAAV 336
>gi|226310296|ref|YP_002770190.1| 23S rRNA (uracil-5-)-methyltransferase [Brevibacillus brevis NBRC
100599]
gi|226093244|dbj|BAH41686.1| probable 23S rRNA (uracil-5-)-methyltransferase [Brevibacillus
brevis NBRC 100599]
Length = 485
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 96/360 (26%), Positives = 153/360 (42%), Gaps = 59/360 (16%)
Query: 54 CPHFQSCSGCT-----HEFNL-HRPIIVDEATDFFKSIGLLDFTFDSCRLYG-------- 99
CP + C GC+ +E L H+ IV D + IG +
Sbjct: 93 CPLYDRCGGCSLQHLAYEEQLRHKQQIV---RDNLRRIGGFQVEGEGAITVHPTLGMSDP 149
Query: 100 WRCRAKLAV-RGTSTSPLIG-LYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
WR R K V G L+G Y E +H+++D+ C H + AV +++Q +LN+
Sbjct: 150 WRYRNKAQVPIGEENGALVGGFYAEKSHSIIDMNECLIQHQVNDEAVAVVKQAATKLNIT 209
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
YDE +G LR+V + V ++ +V + E+ P D+L +
Sbjct: 210 AYDEVRHSGLLRHVVVKVGVKTG-------------EVMVVLVTTEEQIPQRDQL--VEA 254
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
+ G + S+ N NVIFG + L G ++ +G I +++ SF
Sbjct: 255 ICTQVAG-------VTSIVQNINPDKTNVIFGKKTVTLWGSDVIYDYIGPIKFAISARSF 307
Query: 278 GQANTRAFDILLRKLQKYVPYGA----SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
Q N ++L K +Y GA +V D Y G G I L L A+K + V VEI E
Sbjct: 308 YQVNPAQTEVLYNKTLEYA--GATGTETVIDAYCGIGTISLFL--AQKSKHVYGVEIVPE 363
Query: 334 SQLSFEKTVSRLPKSVDG--NISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLV 388
+ + ++G N ++ + +W + +DV+VVDPPRKG D +L+
Sbjct: 364 AIADANRNA-----QLNGVENATFEAGPAEVVIPAWKEKGIRADVIVVDPPRKGCDEALL 418
>gi|164686694|ref|ZP_02210722.1| hypothetical protein CLOBAR_00289 [Clostridium bartlettii DSM
16795]
gi|164604084|gb|EDQ97549.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium bartlettii
DSM 16795]
Length = 466
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 92/359 (25%), Positives = 151/359 (42%), Gaps = 56/359 (15%)
Query: 57 FQSCSGC-THEFNLHRPIIV--DEATDFFKSIGLLD--FTFDSCRL---YGWRCRAKLAV 108
+ C GC E + + + V +E IG LD D+ + + +R +A+ +
Sbjct: 89 LRQCGGCQIQELDYQKQLDVKTNEVKQVISRIGKLDDVVIHDTLGMEHPFRYRNKAQFPI 148
Query: 109 RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDL 168
+ P+IG Y++ +H+++ C H + +++++ I+ NV YDE G L
Sbjct: 149 QKKDNMPVIGFYKKKSHDLISTDECIIQHEVNDKIIKIIKTYIRAYNVSIYDEKTHKGLL 208
Query: 169 RYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSR 228
R++ V + G+V I LV N + K P L+ LA L N
Sbjct: 209 RHLVTKVG-----------FTTGEVMIVLVANGK--KLPY---LKELASVLKENIPG--- 249
Query: 229 EHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDIL 288
++ N T NVI G G+ + +G + ++P SF Q N ++L
Sbjct: 250 ---FKTLVVNVNTQKTNVILGKENIVAYGDGMIRDYIGELVFEISPLSFFQVNPLQTEVL 306
Query: 289 LRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLP 346
K +Y G +V D+Y G G I L L A+K + V +EI V
Sbjct: 307 YNKALEYANLGENDTVFDIYCGIGTISLFL--AQKAKKVYGIEI-----------VEDAI 353
Query: 347 KSVDGNISWHNADN---------SIEPLSWLVG--SDVLVVDPPRKGLDSSLVHALQSI 394
K N +N DN + P + G ++V+VVDPPRKG D ++ + S+
Sbjct: 354 KDAKRNAKINNMDNVEFYVGKAEEVVPKMYKEGKRANVVVVDPPRKGCDEKVLDTIVSM 412
>gi|407474468|ref|YP_006788868.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium acidurici
9a]
gi|407050976|gb|AFS79021.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium acidurici
9a]
Length = 455
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 135/282 (47%), Gaps = 30/282 (10%)
Query: 117 IGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVT 176
IG Y++ +HN+VD C H A+ ++R+ +K+ NV Y+ G++R+V V+
Sbjct: 142 IGFYKKESHNIVDTDECIIQHELSEKAINIVREFMKKFNVSGYNRKTAEGNIRHVITKVS 201
Query: 177 TYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVW 236
++ I +V N++ + P E L + L + S + S+
Sbjct: 202 -----------FKTKDTMIIIVTNTK--RLPY---YEELIDMLKKEIPS------VKSIV 239
Query: 237 ANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYV 296
N + N++ G++ + L G+ + +G + +++P SF Q N+ +IL +K +Y
Sbjct: 240 QNINKNKTNLVLGDKNKVLYGDEKIIDYIGALKFNISPQSFFQINSIQTEILYKKALEYA 299
Query: 297 PYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNIS 354
+V D+Y G G I L L A+K + V +E+ E+ + K + L ++
Sbjct: 300 DLKGKETVYDIYCGIGTISLFL--AQKAKKVYGIEVISEA-IEDAKENAEL-NGIENVEF 355
Query: 355 WHNADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHALQSI 394
+ ++ P + G +DV+V+DPPRKG + ++ + S+
Sbjct: 356 YEGTAETVLPELYKEGIKADVIVLDPPRKGCEKEVLDTIVSM 397
>gi|422696485|ref|ZP_16754443.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1346]
gi|315174955|gb|EFU18972.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1346]
Length = 456
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/361 (23%), Positives = 148/361 (40%), Gaps = 58/361 (16%)
Query: 54 CPHFQSCSGCTHEFNLHRPII------VDEATDFFKSIGLLDF----TFDSCRLYGWRCR 103
CP +++C GC + ++ + + +A + FK ++ T + +R +
Sbjct: 76 CPVYETCGGCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMENPWNYRNK 135
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A+ +R GLYQ +H +V I +C P + L + + + YDE
Sbjct: 136 AQFQLRQIDGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNKFQLPIYDERK 195
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-----ESLAEF 218
+G R + + V + G+VQ+ + ++++K P +K+ E L E
Sbjct: 196 NSGIFRTLMVRVGI-----------QTGEVQVVFI--TQSQKFPQKEKMVRVINEQLPEV 242
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ S+ N Q +++ G+ HL G+ E++ + L+P +F
Sbjct: 243 V--------------SIMQNVQNKKTSLVMGDDTLHLWGKESIEEHINDVVFDLSPRAFF 288
Query: 279 QANTRAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAA-ARKCRSVKCVEINKESQ 335
Q N ++L + K + +V D Y G G IGLSLA A + R + + +
Sbjct: 289 QLNPEQTEVLYNEGIKALDLQPNETVVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDD- 347
Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWL---VGSDVLVVDPPRKGLDSSLVHA 390
+R G + H A + E L W D +VVDPPR GLD L+ A
Sbjct: 348 -------ARFNAKRLGVTNTHYAVGTAEDLLPKWFKEGFKPDAIVVDPPRTGLDRKLLTA 400
Query: 391 L 391
L
Sbjct: 401 L 401
>gi|220930233|ref|YP_002507142.1| TrmA family RNA methyltransferase [Clostridium cellulolyticum H10]
gi|220000561|gb|ACL77162.1| RNA methyltransferase, TrmA family [Clostridium cellulolyticum H10]
Length = 460
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 90/351 (25%), Positives = 151/351 (43%), Gaps = 40/351 (11%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIVDEATDFFKSI----GLLDFTF-DSCRL---YGWRCRAK 105
CP F C GC + ++ + + ++I G+ D D+ + Y +R + +
Sbjct: 79 CPVFDKCGGCAVQHMTYQAQLDFKKDTVLQNIRRIGGIQDVVVNDTIGMENPYKYRNKVQ 138
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
V + IG Y+ +HN++D C N +++R K+ + YDE
Sbjct: 139 YPVGWDNGEITIGFYETRSHNIIDGSLCDIQPDESNKIRDIVRSFCKDAGIAIYDEKTGK 198
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL--ESLAEFLWRNG 223
G LR+V + + +R ++ + LV N +K SD L + L EF
Sbjct: 199 GLLRHVMV-----------RKGFRTNEIMVVLVING--DKLLKSDDLVKKLLEEF----- 240
Query: 224 GSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTR 283
I S+ N T N+I GN+ + G+ + +G ++P SF Q N
Sbjct: 241 ------PDIKSIILNVNTKNTNIILGNKNICIYGQMYITDFIGSFKFEISPLSFFQVNPI 294
Query: 284 AFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
++L K +Y +V DLY G G I L L +++ + V VE+ ++ +S +
Sbjct: 295 QTEVLYEKALEYAGLSGNETVFDLYCGIGTISLYL--SQRAKRVIGVEVVPDA-ISDARR 351
Query: 342 VSRLPKSVDGNISWHNADNSI-EPLSWLVGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I + S V +DV+VVDPPRKG D L+ L
Sbjct: 352 NAELNGITNVEFLVGEAEKVIPDMYSQGVKADVVVVDPPRKGCDEVLLSTL 402
>gi|339638360|emb|CCC17458.1| uncharacterized RNA methyltransferase lp_3226 [Lactobacillus
pentosus IG1]
Length = 481
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 87/328 (26%), Positives = 146/328 (44%), Gaps = 46/328 (14%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGI---KEL 154
Y +R +A+ VR GLY+E +H++VD+P C P A + ++RQ + +EL
Sbjct: 154 YAYRNKAQFQVRMIDGHVAAGLYKENSHDLVDLPTCSVQMP---ATMTVMRQVVAWLEEL 210
Query: 155 NVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDK-LE 213
V YDE +G ++ +L E G+VQ+ + N+ K P + L
Sbjct: 211 EVPIYDETHNSGIVK-----------TLVVREAAATGEVQLVFITNT--PKLPKKHQLLM 257
Query: 214 SLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLA 273
+AE L + SV N ++I+G++ L G+ E + G+ L+
Sbjct: 258 KIAEKL----------PMVVSVMQNVNAGKTSLIWGDQTTLLAGKPTITEELDGLVFDLS 307
Query: 274 PSSFGQAN---TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLA-AARKCRSVKCVE 329
+F Q N T+ L R+ P ++ D Y+G G IGLSLA A++ R + +
Sbjct: 308 ARAFFQLNPQQTKKLYRLAREALDLAP-NETLVDAYSGVGTIGLSLADVAKEVRGMDTIP 366
Query: 330 INKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSS 386
+ K ++ N + + + WL D +VVDPPR GLD
Sbjct: 367 AAVADANANAK------RNQITNAHYEVGEAEVLLPQWLASGFAPDAMVVDPPRTGLDGV 420
Query: 387 LVHALQSIGSAERKAKSLSESSSSMVKE 414
L+ A+ + SA K +S + S++ ++
Sbjct: 421 LIDAI--LQSAPEKLVYISCNPSTLARD 446
>gi|410594231|ref|YP_006950958.1| RNA methyltransferase [Streptococcus agalactiae SA20-06]
gi|421531527|ref|ZP_15977909.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
agalactiae STIR-CD-17]
gi|403643350|gb|EJZ04132.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
agalactiae STIR-CD-17]
gi|410517870|gb|AFV72014.1| RNA methyltransferase [Streptococcus agalactiae SA20-06]
Length = 458
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/330 (25%), Positives = 153/330 (46%), Gaps = 48/330 (14%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A++ VR G +++ +H +V I I+A + R +++ +++P
Sbjct: 125 AYRNKAQVPVRRVDGQLETGFFRKNSHTLVPIEDYLIQEKEIDALINFTRDLLRQFDIKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE+ ++G +R ++ + G++ + LV P +++ + E
Sbjct: 185 YDEEQQSGLIR-----------NIVVRRGHYTGQLMLVLVTTR-----PKIFRIDQMIEK 228
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
L S + S+ N +NVIFG +R L G + + G +++ SF
Sbjct: 229 LVSAFPS------VVSIMQNINDRNSNVIFGKEFRTLYGSDTIEDQMLGNTYAISAQSFY 282
Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q NT + L +K + + V D Y+G G IGLS+ A++ + V VE+
Sbjct: 283 QVNTEMAEKLYKKAIDFSALNSEDIVIDAYSGIGTIGLSV--AKQVKHVYGVEV------ 334
Query: 337 SFEKTVSRLPKSVDGN---ISWHNADNSIEPLS-WL---VGSDVLVVDPPRKGLDSSLVH 389
EK VS ++ N S + AD++ ++ WL + V++VDPPRKGL S VH
Sbjct: 335 -VEKAVSDAKENATRNGITNSTYVADSAENAMAKWLKEGIKPTVIMVDPPRKGLTESFVH 393
Query: 390 ALQSIGSAERKAKSLSE---SSSSMVKEEK 416
+ +A+ KA ++ +S++M ++ K
Sbjct: 394 S-----AAQTKADKITYISCNSATMARDIK 418
>gi|157150892|ref|YP_001450645.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus gordonii
str. Challis substr. CH1]
gi|157075686|gb|ABV10369.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus gordonii
str. Challis substr. CH1]
Length = 456
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 142/306 (46%), Gaps = 40/306 (13%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFFIQDPVIDQVVVALRDLLRRYDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R + + Y+ G++ + LV P ++E L E +
Sbjct: 186 DEKEQSGLIRNLVVRCGHYS-----------GQIMVILVTTR-----PKIFRVEQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A SF Q
Sbjct: 230 IKQFPE------IVSVMQNINDRNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPSFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT+ + L + + A V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTKMAEKLYQTAIDFADLRADDVVIDAYSGIGTIGLSV--AKLVKEVYGVEVIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWH----NADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHA 390
+K +++G + H A+N+++ +WL + V+ VDPPRKGL S + A
Sbjct: 342 SKKNA-----AINGITNAHYVCDTAENAMK--NWLKEGIQPTVIFVDPPRKGLTESFIKA 394
Query: 391 LQSIGS 396
G+
Sbjct: 395 STQTGA 400
>gi|403387994|ref|ZP_10930051.1| RNA methyltransferase [Clostridium sp. JC122]
Length = 466
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/364 (22%), Positives = 154/364 (42%), Gaps = 65/364 (17%)
Query: 54 CPHFQSCSGCTHEFNLHRPII---VDEATDFFKSIGLLD-----FTFDSCRLYGWRCRAK 105
C ++ C GC + + + + + D K IG L+ T Y +R + +
Sbjct: 81 CSTYKRCGGCNLQHSTYEAQLSFKTERVRDVIKRIGKLEDVKIHNTIGMENPYNYRNKVQ 140
Query: 106 LAV-RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
L V + ++G Y +H+++++ C + + ++++ +K+ N++ YDE
Sbjct: 141 LPVGKNKDGEIVVGFYAPRSHDIINMECCYIQDEVGDKVIRVVKEWMKKFNIQTYDEKTN 200
Query: 165 TGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGG 224
+G +R++ M + T NG NS P S++L S+
Sbjct: 201 SGIVRHI-MIRKGFKTEEVMVVVVTNG--------NS----IPYSEELVSML-------- 239
Query: 225 SRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRA 284
+ I S+ N NVI G + + L G+ + +G +++P SF Q N+
Sbjct: 240 -KDNIEGIDSIIQNINNKQTNVILGQKCKTLYGKDTITDFIGEFKFNISPLSFFQINSIQ 298
Query: 285 FDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTV 342
++L K +Y V D Y G G I L L ++ + V VEI
Sbjct: 299 TEVLYNKALEYADLQGDEIVFDAYCGTGTISLFL--SQNAKKVYGVEI------------ 344
Query: 343 SRLPKSVDGNISWHNADNSIEPLSWLVG---------------SDVLVVDPPRKGLDSSL 387
+P+++ I + +N++ ++VG +DV+VVDPPRKG + SL
Sbjct: 345 --IPQAIQNAIK-NAEENNVTNTEFIVGEAENEIPKLIEKGIKADVVVVDPPRKGCEESL 401
Query: 388 VHAL 391
+H++
Sbjct: 402 LHSI 405
>gi|419468894|ref|ZP_14008765.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA06083]
gi|421309464|ref|ZP_15760091.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA62681]
gi|379546997|gb|EHZ12135.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA06083]
gi|395910885|gb|EJH21754.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA62681]
Length = 543
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 137/302 (45%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +HN++ + P I+ V LR + +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLFRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE + +G +R +L + +G++ + LV P +++ L E +
Sbjct: 186 DEKEHSGLIR-----------NLVVRRGHYSGQIMVVLVTTR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGLSV--AKHVKEVYGVELIPEA-VE 340
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
K ++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 341 NSKKNAQLNNISNAHYVCDTAENAMK--NWLKDGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|229544908|ref|ZP_04433633.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis TX1322]
gi|229309800|gb|EEN75787.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis TX1322]
gi|295113655|emb|CBL32292.1| 23S rRNA m(5)U-1939 methyltransferase [Enterococcus sp. 7L76]
Length = 456
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/361 (23%), Positives = 148/361 (40%), Gaps = 58/361 (16%)
Query: 54 CPHFQSCSGCTHEFNLHRPII------VDEATDFFKSIGLLDF----TFDSCRLYGWRCR 103
CP +++C GC + ++ + + +A + FK ++ T + +R +
Sbjct: 76 CPVYETCGGCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMENPWNYRNK 135
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A+ +R GLYQ +H +V I +C P + L + + + YDE
Sbjct: 136 AQFQLRQIDGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERK 195
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-----ESLAEF 218
+G R + + V + G+VQ+ + ++++K P +K+ E L E
Sbjct: 196 NSGIFRTLMVRVGI-----------QTGEVQVVFI--TQSQKFPQKEKMVRAINEQLPEV 242
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ S+ N Q +++ G+ HL G+ E++ + L+P +F
Sbjct: 243 V--------------SIMQNVQNKKTSLVMGDDTLHLWGKESIEEHINDVVFDLSPRAFF 288
Query: 279 QANTRAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAA-ARKCRSVKCVEINKESQ 335
Q N ++L + K + +V D Y G G IGLSLA A + R + + +
Sbjct: 289 QLNPEQTEVLYNEGIKALNLQPNETVVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDD- 347
Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWL---VGSDVLVVDPPRKGLDSSLVHA 390
+R G + H A + E L W D +VVDPPR GLD L+ A
Sbjct: 348 -------ARFNAKRLGVTNTHYAVGTAEDLLPKWFKEGFKPDAIVVDPPRTGLDRKLLTA 400
Query: 391 L 391
L
Sbjct: 401 L 401
>gi|229089447|ref|ZP_04220718.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-42]
gi|228693924|gb|EEL47616.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-42]
Length = 465
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 85 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRN 142
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 143 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEE 202
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 203 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 244
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 245 -----AKFPEVKSIVQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 299
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ + K
Sbjct: 300 PEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEA-IEDAKR 358
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 359 NAALNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 409
>gi|310640376|ref|YP_003945134.1| RNA methyltransferase, trma family [Paenibacillus polymyxa SC2]
gi|309245326|gb|ADO54893.1| RNA methyltransferase, TrmA family [Paenibacillus polymyxa SC2]
Length = 585
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 135/300 (45%), Gaps = 36/300 (12%)
Query: 100 WRCRAKLAV-RGTSTSPLIG-LYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
WR R K V G + L+G Y G+H +VD+ C R + V +++ + L +
Sbjct: 257 WRYRNKAQVPIGVAEGGLVGGFYARGSHRIVDMNTCLIQDERNDEVVARVKEIGRMLGIS 316
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
Y+E+ G LR+V + +R G++ + LV N R+ P++D
Sbjct: 317 AYNEETGRGLLRHVVVKTA-----------FRTGEMMLVLVTNGRD--IPHADA------ 357
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
W G R ++ S+ N T NVIFG+ R L G ++ +G + +++ SF
Sbjct: 358 --W-IGSIREHIPHVASICQNVNTKRTNVIFGDETRVLWGRDVIYDYIGNVQFAISARSF 414
Query: 278 GQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q N ++L K +Y +V D Y G G I L L A+ V VEI KE
Sbjct: 415 YQVNPVQTEVLYSKTVEYAGLTGKETVIDAYCGIGTISLFL--AQHADQVYGVEIVKE-- 470
Query: 336 LSFEKTVSRLPKSVDGNISWH-NADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ + S + N+ + A + P +W + +DV+VVDPPRKG D L+ +
Sbjct: 471 -AIDDARSNALLNEMRNVKFEVGASEDVIP-AWKEQGITADVIVVDPPRKGCDPRLLDTI 528
>gi|294497118|ref|YP_003560818.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium QM
B1551]
gi|294347055|gb|ADE67384.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium QM
B1551]
Length = 457
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 86/357 (24%), Positives = 151/357 (42%), Gaps = 52/357 (14%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLL-----DFTFDSCRLYGWRCRAK 105
CP ++ C GC + + + D IG L T + +R +A+
Sbjct: 78 CPVYKQCGGCQLQHVSYEGQLQFKQKQVKDVMARIGHLPDVPVHSTLGMNDPWRYRNKAQ 137
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
+ V + G YQ+ +H+++++ C + V+ +R ++ +V Y E
Sbjct: 138 VPVAEREGGLVAGFYQQRSHDIINMDACLIQQQANDDVVQAVRSICEKHDVSAYQEQKHK 197
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRNGG 224
G LR++ MA RY +I +V +R + PN ++ E + E +
Sbjct: 198 GSLRHI-MA------------RYGLVTGEIMVVIVTRTAELPNKKRIIEDIIEAVPN--- 241
Query: 225 SRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRA 284
+ S+ N + NVI GN+ L GE ++ +G + +++ SF Q N
Sbjct: 242 -------VKSIVQNVNSKRTNVILGNQTNVLWGEEYIYDYIGDVKFAISAKSFYQVNPEQ 294
Query: 285 FDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTV 342
+L K +Y +V D Y G G I L L A+K + V VEI E+ +
Sbjct: 295 TKVLYDKALEYADLTGEETVIDAYCGIGTISLFL--AQKAKKVYGVEIVPEA-------I 345
Query: 343 SRLPKSVDGNISWHNADNSIEPLSWL--------VGSDVLVVDPPRKGLDSSLVHAL 391
++ + N HNA+ + + + +DV+VVDPPRKG D +L++ +
Sbjct: 346 EDAKRNAELN-GIHNAEFEVGEAEVVIPNWYKQGIKADVIVVDPPRKGCDEALLNTI 401
>gi|433462528|ref|ZP_20420110.1| RNA methyltransferase, partial [Halobacillus sp. BAB-2008]
gi|432188717|gb|ELK45879.1| RNA methyltransferase, partial [Halobacillus sp. BAB-2008]
Length = 344
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 129/301 (42%), Gaps = 37/301 (12%)
Query: 100 WRCRAKLAV---RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNV 156
WR R K+ + + + G YQ+ +HN++D+ C + VE +R+ +
Sbjct: 13 WRYRNKVQIPVGQKEDGELMTGFYQKRSHNIIDMDTCLIQDEVNDRMVETVRRIASRYGI 72
Query: 157 EPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLA 216
+ YDE G LR++ M T T I +V ++ +K P+ +K+
Sbjct: 73 DAYDEQTHRGVLRHI-MVRTGQTTK------------DIMIVIVTKTKKLPHKEKIMDEI 119
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
+ N + S+ N ++ NVI G L GE ++ +G I ++P S
Sbjct: 120 RDAFPN---------VKSIVHNINSAKTNVILGRETNVLWGEEYIYDTIGDIRFMISPKS 170
Query: 277 FGQANTRAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q N L + Y G +V D Y G G I L L A+K V VEI E+
Sbjct: 171 FYQVNPTQTKTLYDQALSYADLRGGETVIDAYCGIGTISLFL--AQKAEKVYGVEIVPEA 228
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL----VGSDVLVVDPPRKGLDSSLVHA 390
+K +RL K + A+ + + W + DV+VVDPPRKG D L+ A
Sbjct: 229 VEDAKKN-ARLNKMDNAEFFVGEAE---KLMPWWRNQGLRPDVIVVDPPRKGCDEQLLKA 284
Query: 391 L 391
+
Sbjct: 285 M 285
>gi|423620068|ref|ZP_17595899.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD115]
gi|401249993|gb|EJR56298.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD115]
Length = 458
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLSDVPVHPVLGMRNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C +A ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDALIQEVKRICEKHGISAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N + NVIFG+ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNSKRTNVIFGDTTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 293 PEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 352
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 353 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|417848419|ref|ZP_12494364.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
SK1073]
gi|339452633|gb|EGP65256.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
SK1073]
Length = 451
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 139/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFFIQDPVIDEVVVALRDLLRRYDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P ++E L E L
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVILVTTR-----PKVFRVELLIEQL 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IF WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPD------ITSVMQNINDQNTNAIFSKEWRTLYGQDFITDQMLGNDYQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + VTD Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKKDDVVTDAYSGIGTIGLSV--AKHVKEVYGVEVIPEA-VE 340
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
K ++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 341 NSKKNAQLNNISNAHYVCDTAENAMK--NWLKEGIQPTVILVDPPRKGLTESFIKASSQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|168494457|ref|ZP_02718600.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae CDC3059-06]
gi|417686524|ref|ZP_12335801.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA41301]
gi|418073814|ref|ZP_12711072.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA11184]
gi|418078519|ref|ZP_12715742.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 4027-06]
gi|418089422|ref|ZP_12726579.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA43265]
gi|418098397|ref|ZP_12735496.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 6901-05]
gi|418114525|ref|ZP_12751515.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 5787-06]
gi|418173401|ref|ZP_12810015.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA41277]
gi|418178064|ref|ZP_12814648.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA41565]
gi|418182767|ref|ZP_12819327.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA43380]
gi|418216478|ref|ZP_12843202.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae Netherlands15B-37]
gi|419433515|ref|ZP_13973633.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA40183]
gi|419440307|ref|ZP_13980358.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA40410]
gi|419464137|ref|ZP_14004030.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA04175]
gi|421249324|ref|ZP_15705785.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2082239]
gi|421281012|ref|ZP_15731810.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA04672]
gi|183575617|gb|EDT96145.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae CDC3059-06]
gi|332075376|gb|EGI85845.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA41301]
gi|353747710|gb|EHD28366.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 4027-06]
gi|353750661|gb|EHD31299.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA11184]
gi|353762108|gb|EHD42671.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA43265]
gi|353769757|gb|EHD50273.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 6901-05]
gi|353787267|gb|EHD67674.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 5787-06]
gi|353840100|gb|EHE20174.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA41277]
gi|353844838|gb|EHE24881.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA41565]
gi|353848908|gb|EHE28918.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA43380]
gi|353873529|gb|EHE53390.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae Netherlands15B-37]
gi|379539356|gb|EHZ04535.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA04175]
gi|379576516|gb|EHZ41440.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA40183]
gi|379579739|gb|EHZ44638.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA40410]
gi|395614436|gb|EJG74456.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2082239]
gi|395882173|gb|EJG93220.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA04672]
Length = 543
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 137/302 (45%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +HN++ + P I+ V LR + +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLFRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE + +G +R +L + +G++ + LV P +++ L E +
Sbjct: 186 DEKEHSGLIR-----------NLVVRRGHYSGQIMVVLVTTR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGLSV--AKHVKEVYGVELIPEA-VE 340
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
K ++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 341 NSKKNAQLNNISNAHYVCDTAENAMK--NWLKDGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|389856841|ref|YP_006359084.1| tRNA (uracil-5-)-methyltransferase-like SAM-dependent
methyltransferase [Streptococcus suis ST1]
gi|353740559|gb|AER21566.1| tRNA (uracil-5-)-methyltransferase-like SAM-dependent
methyltransferase [Streptococcus suis ST1]
Length = 452
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 146/303 (48%), Gaps = 36/303 (11%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A + VR + G +++ +H++V I + I+A V R +++L+++P
Sbjct: 125 AYRNKAAVPVRRVNGQLETGFFRKNSHDLVPIEDFYIQYKEIDALVLATRDLLRKLDLKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R + + Y+ G++ + LV P ++E+L E
Sbjct: 185 YDEKEQTGLVRNIVVRRGHYS-----------GQLMLVLVTTR-----PKIFRVETLIER 228
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
L S+ + S+ N N IFG +R L G + + G + ++ SF
Sbjct: 229 LT------SQFPNLVSIVQNINDQNTNAIFGQEFRLLHGSETIADTMLGNEFEISAPSFY 282
Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q NT + L + + A V D Y+G G IGLS A++ + V VE+ +++ L
Sbjct: 283 QVNTEMAEKLYQTAIDFAELSADDVVIDAYSGIGTIGLSF--AKQVKHVYGVEVVEKAVL 340
Query: 337 SFEKTVSRLPKSVDGNISW--HNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+K +R +D N+++ +A+++++ W+ V V+ VDPPRKGL S + A
Sbjct: 341 DSQKNAAR--NGID-NVTYVCDSAESAMQ--KWVADGVKPTVIFVDPPRKGLTESFIKAS 395
Query: 392 QSI 394
S+
Sbjct: 396 TSV 398
>gi|419778432|ref|ZP_14304323.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
SK10]
gi|383187271|gb|EIC79726.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
SK10]
Length = 452
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 139/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ + LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFFIQDPVIDQVIVALRDLLRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P ++E L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVILVTTR-----PKIFRVEQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG W+ L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDRNTNAIFGKEWKTLYGQDYIMDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELREDDVVIDAYSGIGTIGLSV--AKHVKEVYGVEVIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K + L + + A+N+++ WL + S V++VDPPRKGL S + A
Sbjct: 342 SQKNAA-LNNITNTHYVCDTAENAMK--KWLKEGIQSTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|228925576|ref|ZP_04088665.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228834054|gb|EEM79602.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
Length = 465
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 85 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRN 142
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 143 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEE 202
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 203 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 244
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 245 -----AKFPEVKSIVQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 299
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ + K
Sbjct: 300 PEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEA-IEDAKR 358
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 359 NAALNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 409
>gi|229028174|ref|ZP_04184315.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1271]
gi|228733122|gb|EEL83963.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1271]
Length = 465
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 152/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 85 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRN 142
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 143 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEE 202
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 203 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 244
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG+ L G ++ +G I +++ SF Q N
Sbjct: 245 -----AKFPEVKSIVQNVNTKRTNVIFGDTTTVLYGSEYIYDFIGDIKFAISARSFYQVN 299
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 300 PEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 359
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 360 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 409
>gi|196045238|ref|ZP_03112470.1| RNA methyltransferase, TrmA family [Bacillus cereus 03BB108]
gi|225862370|ref|YP_002747748.1| RNA methyltransferase, TrmA family [Bacillus cereus 03BB102]
gi|376264344|ref|YP_005117056.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
F837/76]
gi|196023822|gb|EDX62497.1| RNA methyltransferase, TrmA family [Bacillus cereus 03BB108]
gi|225789520|gb|ACO29737.1| RNA methyltransferase, TrmA family [Bacillus cereus 03BB102]
gi|364510144|gb|AEW53543.1| 23S rRNA (Uracil-5-) -methyltransferase RumA [Bacillus cereus
F837/76]
Length = 458
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMKNPWIYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ + K
Sbjct: 293 PEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEA-IEDAKR 351
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 352 NAALNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|228931823|ref|ZP_04094719.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228827803|gb|EEM73541.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
Length = 458
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQAVKRICEKHGISAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKVIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ + K
Sbjct: 293 PEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEA-IEDAKR 351
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 352 NAALNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|228478261|ref|ZP_04062869.1| 23S rRNA-methyltransferase RumA [Streptococcus salivarius SK126]
gi|228249940|gb|EEK09210.1| 23S rRNA-methyltransferase RumA [Streptococcus salivarius SK126]
Length = 452
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 90/365 (24%), Positives = 158/365 (43%), Gaps = 49/365 (13%)
Query: 65 HEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGLY 120
+ R +VD + +K+ G+ D T Y +R +A++ VR G Y
Sbjct: 90 EQLKFKRKQVVD---NLYKTAGISDVEVAETLGMETPYAYRNKAQVPVRRVKGQLETGFY 146
Query: 121 QEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNT 180
++ +H+++ I I+ + +R ++ +++PYDE ++TG +R++ + Y+
Sbjct: 147 RKNSHDLIPIEDFLIQDKEIDKLIVFVRDLLRRYDLKPYDEKEQTGLIRHLVVRRGHYSG 206
Query: 181 SLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQ 240
QI LV+ + K D++ + + N I S+ N
Sbjct: 207 -------------QIMLVFVTTRPKIFRIDQIIAKITEAFPN---------IVSIIQNIN 244
Query: 241 TSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGA 300
N IFG +R L G+ +++ G D ++ SF Q NT + L + + +
Sbjct: 245 DKNTNAIFGKDFRTLYGQDTITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDFSDLNS 304
Query: 301 S--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGN--ISWH 356
V D Y+G G IGLS A++ + V VE+ E V K+ D N + H
Sbjct: 305 DSIVIDAYSGIGTIGLSF--AKQVKEVYGVEV-------IETAVEDAKKNADRNGITNAH 355
Query: 357 NADNSIE--PLSWL---VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSM 411
+S E W + DV++VDPPRKGL S + A S+ K +S + ++M
Sbjct: 356 YVADSAENAMAKWSKDGIKPDVIIVDPPRKGLTESFIKA--SVAMQPEKITYVSCNPATM 413
Query: 412 VKEEK 416
++ K
Sbjct: 414 ARDIK 418
>gi|223932232|ref|ZP_03624236.1| RNA methyltransferase, TrmA family [Streptococcus suis 89/1591]
gi|223899213|gb|EEF65570.1| RNA methyltransferase, TrmA family [Streptococcus suis 89/1591]
Length = 453
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 145/303 (47%), Gaps = 36/303 (11%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A + VR + G +++ +H++V I H I+A V R +++L+++P
Sbjct: 125 AYRNKAAVPVRRVNGQLETGFFRKNSHDLVPIEDFYIQHKEIDALVLATRDLLRKLDLKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R + + Y +G++ + LV P ++E+L E
Sbjct: 185 YDEKEQTGLVRNIVVRRGHY-----------SGQLMLVLVTT-----RPKIFRVETLIER 228
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
L S+ + S+ N N IFG + L G + + G + ++ SF
Sbjct: 229 L------TSQFPNLVSIVQNINDQNTNAIFGQEFHLLHGSETIADTMLGNEFEISAPSFY 282
Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q NT + L + + A V D Y+G G IGLS A++ + V VE+ +++ L
Sbjct: 283 QVNTEMAEKLYQTAIDFAELSADDVVIDAYSGIGTIGLSF--AKQVKHVYGVEVVEKAVL 340
Query: 337 SFEKTVSRLPKSVDGNISW--HNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+K +R +D N+++ +A+++++ W+ V V+ VDPPRKGL S + A
Sbjct: 341 DSQKNAAR--NGID-NVTYVCDSAESAMQ--KWVADGVKPTVIFVDPPRKGLTESFIKAS 395
Query: 392 QSI 394
S+
Sbjct: 396 TSV 398
>gi|49480082|ref|YP_034651.1| RNA methyltransferase [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|301052046|ref|YP_003790257.1| TrmA family RNA methyltransferase [Bacillus cereus biovar anthracis
str. CI]
gi|423553758|ref|ZP_17530085.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
ISP3191]
gi|49331638|gb|AAT62284.1| RNA methyltransferase protein, trmA family (tRNA
(uracil-5-)-methyltransferase, TrmA) [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|300374215|gb|ADK03119.1| RNA methyltransferase protein, trmA family [Bacillus cereus biovar
anthracis str. CI]
gi|401183531|gb|EJQ90647.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
ISP3191]
Length = 458
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ + K
Sbjct: 293 PEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEA-IEDAKR 351
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 352 NAALNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|228913060|ref|ZP_04076699.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228846465|gb|EEM91478.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
Length = 459
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ + K
Sbjct: 293 PEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEA-IEDAKR 351
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 352 NAALNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|423068264|ref|ZP_17057052.1| hypothetical protein HMPREF9682_00273 [Streptococcus intermedius
F0395]
gi|355367155|gb|EHG14868.1| hypothetical protein HMPREF9682_00273 [Streptococcus intermedius
F0395]
Length = 451
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 84/338 (24%), Positives = 154/338 (45%), Gaps = 38/338 (11%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + G +++ +H+++ I P I+ + R ++ +++P
Sbjct: 125 GYRNKAQVPVRRVNGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R +L + +G++ + LV +R++ +E L E
Sbjct: 185 YDEQEKTGLIR-----------NLVVRRGHYSGEIMVILV-TTRSKIFRVEQLIERLVEA 232
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
I S+ N N IFG W+ L G + + D +A +F
Sbjct: 233 FPA----------IESIMQNINDQNTNTIFGKDWQTLHGRDYITDRMLNNDFQIAAPAFY 282
Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q NT + L + + A V D Y+G G IGLS+ A++ + V VE+ E+
Sbjct: 283 QVNTEMAEKLYQTAIDFSELAADDVVLDAYSGIGTIGLSV--AKQVKQVYGVEVIPEAVE 340
Query: 337 SFEKTVSRLPKSVDGNISWH----NADNSIEPLSWL-VGSDVLVVDPPRKGLDSSLVHAL 391
+ +K ++G + H +A+N++ S + DV++VDPPRKGL S + +
Sbjct: 341 NSQKNA-----EINGITNTHYVCDSAENAMANWSKQDIKPDVILVDPPRKGLTESFIES- 394
Query: 392 QSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQ 429
S+ +K +S + ++M ++ K L K VQ
Sbjct: 395 -SVSMEPKKIIYISCNPATMARDIKLYQELGYKLKKVQ 431
>gi|158319641|ref|YP_001512148.1| RNA methyltransferase [Alkaliphilus oremlandii OhILAs]
gi|158139840|gb|ABW18152.1| RNA methyltransferase, TrmA family [Alkaliphilus oremlandii OhILAs]
Length = 452
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 130/308 (42%), Gaps = 45/308 (14%)
Query: 36 LPLDPPAANLPSLTCALQCPHFQSCSGCT-------HEFNLHRPIIVDEATDFFKSIGLL 88
L + P+AN + C + C GC + R +V+ K IG +
Sbjct: 58 LEILKPSANRVTPKCGIA----GICGGCQIMHMDYEQQLRTKRNTVVEA----LKRIGKI 109
Query: 89 DF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAV 144
D T Y +R +A+ V ++G Y++G+H +VD +C P V
Sbjct: 110 DAVVHPTLGMDNPYEYRNKAQFPVGILDGKSILGFYKKGSHEIVDTEYCHIQAPINTKIV 169
Query: 145 ELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNE 204
+++++ I + +V YDE + +G +R+V V + G+V + +V N +
Sbjct: 170 QVIKKYIDDFDVAVYDEKEHSGLIRHVVTKVG-----------FATGEVMVIMVTNGK-- 216
Query: 205 KSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWEN 264
+ P DK L E L N + SV N NVIFG+ L GE +
Sbjct: 217 EFPYKDK---LIEMLKENVEG------LKSVVQNINMKNTNVIFGDTTFTLYGEDQIVDY 267
Query: 265 VGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKC 322
+G + +++ SF Q N +L K +Y + V D+Y G G I L L A+K
Sbjct: 268 IGDLKFNISARSFYQVNPAQTKVLYEKALEYADLTGNERVFDIYCGIGTISLFL--AKKA 325
Query: 323 RSVKCVEI 330
+ V +EI
Sbjct: 326 KEVHGIEI 333
>gi|322391885|ref|ZP_08065350.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus peroris ATCC
700780]
gi|321145365|gb|EFX40761.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus peroris ATCC
700780]
Length = 451
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 155/347 (44%), Gaps = 42/347 (12%)
Query: 81 FFKSIGLLDFTF-DSCRLYG---WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAH 136
+K G++D D+ + +R +A++ VR + G +++ +H+++ +
Sbjct: 103 LYKIAGIMDIEVADTLGMENPVQYRNKAQVPVRRVNGQVETGFFRKNSHDLMPLEDFYIQ 162
Query: 137 HPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQIT 196
P I+ + LR ++ +++PYDE +++G +R +L + +G++ +
Sbjct: 163 DPVIDQVIVALRDLLRRYDLKPYDEKEQSGLIR-----------NLVVRRGHHSGEIMVI 211
Query: 197 LVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLL 256
LV P ++E L E + + I SV N N IFG WR L
Sbjct: 212 LVTTR-----PKIFRVEQLIEQVIKQFPE------IVSVMQNINDQNTNAIFGKEWRVLY 260
Query: 257 GETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGL 314
G+ + + G ++ +F Q NT + L + + V D Y+G G IGL
Sbjct: 261 GQDYITDQMLGNSFQISGPAFYQVNTEMAEKLYQTAIDFAELSEEDVVIDAYSGIGTIGL 320
Query: 315 SLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE--PLSWL---V 369
S+ A+ + V VE+ E+ + +K S++G + H +S E W +
Sbjct: 321 SV--AKHVKDVYGVEVIPEAVENSQKNA-----SINGITNAHYVADSAENAMTKWSKNGI 373
Query: 370 GSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEK 416
DV++VDPPRKGL S + A S+ K +S + ++M ++ K
Sbjct: 374 KPDVIIVDPPRKGLTESFIKA--SVAMQPEKITYVSCNPATMARDIK 418
>gi|347521614|ref|YP_004779185.1| tRNA methyltransferase [Lactococcus garvieae ATCC 49156]
gi|385833001|ref|YP_005870776.1| tRNA methyltransferase [Lactococcus garvieae Lg2]
gi|343180182|dbj|BAK58521.1| tRNA methyltransferase [Lactococcus garvieae ATCC 49156]
gi|343182154|dbj|BAK60492.1| tRNA methyltransferase [Lactococcus garvieae Lg2]
Length = 462
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/296 (26%), Positives = 135/296 (45%), Gaps = 35/296 (11%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H++V I +P I+ V +R+ + +LN+ PY
Sbjct: 140 YRNKAQVPVRSVNGKTETGFFRKNSHDLVPIRDFYIQNPEIDELVNQVRESLIKLNIPPY 199
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE + G +R ++ + +G++ + LV +K L+E +
Sbjct: 200 DEQTKRGIVR-----------NIVIRRGHHSGQMMLILVV--------TKEKFAGLSELV 240
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ S + TST N IFG++++ L G+ +++ G D ++ +F Q
Sbjct: 241 AEYSNK------VDSFQLSINTSTGNAIFGSKFKLLSGKDYITDSMLGKDFQISARAFYQ 294
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + A V D Y+G G IGL + A K V +EI E+ +
Sbjct: 295 VNTAQAEKLYQLAYDFADLKAEDVVIDAYSGIGTIGLGM--ADKVAQVYGMEIIPEA-VE 351
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHA 390
KT + L + A+ + WL + DV+ VDPPRKGLD S + A
Sbjct: 352 NAKTNAALNGITNAQYEVGPAEEVMP--QWLQDGIQPDVIFVDPPRKGLDESFIKA 405
>gi|423638314|ref|ZP_17613966.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD156]
gi|401271571|gb|EJR77587.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD156]
Length = 459
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 84/353 (23%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K ++ + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 293 PEQTKVLYDKTLEFAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 352
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 353 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|322389307|ref|ZP_08062867.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis
ATCC 903]
gi|321144051|gb|EFX39469.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis
ATCC 903]
Length = 452
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 138/302 (45%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ I P I+ V LR I+ +++PY
Sbjct: 126 YRNKAQVPVRRVNGQVETGFFRKNSHDLMPIEDFYIQDPVIDQVVLALRDLIRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E L
Sbjct: 186 DEQEQSGLIR-----------NLVVRRGHHSGEIMVILVTTR-----PKVFRVDQLIEQL 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ + I SV N N IFG WR L G+ + + G ++ +F Q
Sbjct: 230 IKQFPA------IKSVMQNINDQNTNAIFGKEWRVLYGQDYITDQMLGNSFQISGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELREDDVVIDAYSGIGTIGLSV--AKHVKEVYGVEVIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K + L + + A+N+++ +WL + ++VDPPRKGL S + A
Sbjct: 342 SQKNAA-LNNITNAHYVCDTAENAMK--NWLKEGIQPTAILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|196034748|ref|ZP_03102156.1| RNA methyltransferase, TrmA family [Bacillus cereus W]
gi|218901523|ref|YP_002449357.1| TrmA family RNA methyltransferase [Bacillus cereus AH820]
gi|228944128|ref|ZP_04106507.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|195992791|gb|EDX56751.1| RNA methyltransferase, TrmA family [Bacillus cereus W]
gi|218536367|gb|ACK88765.1| RNA methyltransferase, TrmA family [Bacillus cereus AH820]
gi|228815517|gb|EEM61759.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
Length = 458
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ + K
Sbjct: 293 PEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEA-IEDAKR 351
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 352 NAALNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|118476081|ref|YP_893232.1| RNA methyltransferase [Bacillus thuringiensis str. Al Hakam]
gi|229182714|ref|ZP_04309955.1| Uncharacterized RNA methyltransferase [Bacillus cereus BGSC 6E1]
gi|118415306|gb|ABK83725.1| 23S rRNA m(5)U-1939 methyltransferase [Bacillus thuringiensis str.
Al Hakam]
gi|228600799|gb|EEK58378.1| Uncharacterized RNA methyltransferase [Bacillus cereus BGSC 6E1]
Length = 465
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 85 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMKNPWIYRN 142
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 143 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEE 202
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 203 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 244
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 245 -----AKFPEVKSIVQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 299
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ + K
Sbjct: 300 PEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEA-IEDAKR 358
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 359 NAALNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 409
>gi|165871358|ref|ZP_02216006.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0488]
gi|170708771|ref|ZP_02899208.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0389]
gi|164712842|gb|EDR18371.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0488]
gi|170126350|gb|EDS95240.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0389]
Length = 454
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 74 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRN 131
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 132 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEE 191
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 192 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 233
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 234 -----AKFPEVKSIVQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 288
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ + K
Sbjct: 289 PEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEA-IEDAKR 347
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 348 NAALNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 398
>gi|334881483|emb|CCB82359.1| uncharacterized RNA methyltransferase lp_3226 [Lactobacillus
pentosus MP-10]
Length = 481
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 87/328 (26%), Positives = 146/328 (44%), Gaps = 46/328 (14%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGI---KEL 154
Y +R +A+ VR GLY+E +H++VD+P C P A + ++RQ + +EL
Sbjct: 154 YAYRNKAQFQVRMIDGHVAAGLYKENSHDLVDLPTCSVQMP---ATMTVMRQVVAWLEEL 210
Query: 155 NVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDK-LE 213
V YDE +G ++ +L E G+VQ+ + N+ K P + L
Sbjct: 211 EVPIYDEAHNSGIVK-----------TLVVREAAATGEVQLVFITNT--PKLPKKHQLLM 257
Query: 214 SLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLA 273
+AE L + SV N ++I+G++ L G+ E + G+ L+
Sbjct: 258 KIAEKL----------PMVVSVMQNVNAGKTSLIWGDQTTLLAGKPTITEELDGLVFDLS 307
Query: 274 PSSFGQAN---TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLA-AARKCRSVKCVE 329
+F Q N T+ L R+ P ++ D Y+G G IGLSLA A++ R + +
Sbjct: 308 ARAFFQLNPQQTKKLYRLAREALDLAP-NETLVDAYSGVGTIGLSLADVAKEVRGMDTIP 366
Query: 330 INKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSS 386
+ K ++ N + + + WL D +VVDPPR GLD
Sbjct: 367 AAVADANANAK------RNQITNAHYEVGEAKVLLPQWLASGFTPDAMVVDPPRTGLDGV 420
Query: 387 LVHALQSIGSAERKAKSLSESSSSMVKE 414
L+ A+ + SA K +S + S++ ++
Sbjct: 421 LIDAI--LQSAPEKLVYISCNPSTLARD 446
>gi|254739058|ref|ZP_05196760.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
Western North America USA6153]
Length = 404
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 24 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRN 81
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 82 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEE 141
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 142 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 183
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 184 -----AKFPEVKSIVQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 238
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ + K
Sbjct: 239 PEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEA-IEDAKR 297
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 298 NAALNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 348
>gi|116493111|ref|YP_804846.1| tRNA (uracil-5-)-methyltransferase related enzyme [Pediococcus
pentosaceus ATCC 25745]
gi|116103261|gb|ABJ68404.1| 23S rRNA m(5)U-1939 methyltransferase [Pediococcus pentosaceus ATCC
25745]
Length = 455
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 87/340 (25%), Positives = 151/340 (44%), Gaps = 67/340 (19%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR G ++ +H++V I P I+ + +R ++E ++P
Sbjct: 129 GYRNKAQIPVRKIKGKLQTGFFKRNSHDLVPIEDFYIQDPVIDKVIVEVRDILREFYIDP 188
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
Y E + G +R ++ R+G++ + L+ +R + P+ L + E
Sbjct: 189 YREAENKGIIR-----------NIMVRRGRRSGQIMVVLI--TRTKDVPH---LAEITEA 232
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ G + SV N NVI G+ R L GE+ + + G+D ++ SF
Sbjct: 233 IAAIDG-------VVSVIQNINYKQTNVIMGDEDRVLAGESVIHDELLGLDFIISAHSFY 285
Query: 279 QANTRAFDILLRKLQKYVPYGASVT------DLYAGAGVIGLSLAAARKCRSVKCVEINK 332
Q N I KL + A +T D+Y+G G I SLA A+ + V VEI K
Sbjct: 286 QVNP----IQTEKLYQLAIDKAGLTGEETVIDVYSGIGTI--SLAMAKAAKKVYGVEIVK 339
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVD 377
E+ + N +NA N+ ++VG DV+VVD
Sbjct: 340 EA-----------VQDAKINAFQNNASNT----EFVVGKAEEQMQKWQEDGLKPDVVVVD 384
Query: 378 PPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKR 417
PPRKGLD S++ A ++G ++ +S + +++V++ R
Sbjct: 385 PPRKGLDQSVIDA--TVGMKPKRVVYVSCNPATLVRDIDR 422
>gi|423578720|ref|ZP_17554831.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD014]
gi|401219887|gb|EJR26535.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD014]
Length = 458
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 84/353 (23%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K ++ + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 293 PEQTKVLYDKTLEFAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 352
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 353 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|335429912|ref|ZP_08556808.1| TrmA family RNA methyltransferase [Haloplasma contractile SSD-17B]
gi|334888994|gb|EGM27288.1| TrmA family RNA methyltransferase [Haloplasma contractile SSD-17B]
Length = 459
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 90/358 (25%), Positives = 153/358 (42%), Gaps = 52/358 (14%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYG--WRCRAK 105
+C ++ C GC ++E L D D K IG L+ + C WR R K
Sbjct: 77 RCSLYKECGGCNVQHISYEQQLANK--TDLVVDNLKRIGHLEVDVNPCIGMEDPWRYRNK 134
Query: 106 LAVRGTSTSP---LIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
V T + G Y+ +H++V++ C + ++ +RQ E ++EPY+E
Sbjct: 135 TQVPFGLTEAGEVVAGFYKPRSHDIVNMERCDIQDDTADEIIDRIRQLSAEYDIEPYNEF 194
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRN--EKSPNSDKLESLAEFLW 220
G LR+V + + + +TL+ N + +K P D L S EF
Sbjct: 195 KHKGFLRHV-----------IVRKGHATNEYMVTLITNKKRFLQKEPFVDVLSS--EF-- 239
Query: 221 RNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQA 280
I S+ N T NVI G+ L G+ ++ +G + +++ SF Q
Sbjct: 240 ---------KMIKSIVQNVNTKKTNVILGDETLVLYGQEYIYDYIGDVKFAISARSFYQI 290
Query: 281 NTRAFDILLRKLQKY--VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSF 338
N +L K +Y + ++ D Y G G I +L AA + + V VE+ K++
Sbjct: 291 NPVQTKVLYEKALEYANLTKEDTLIDAYCGIGTI--ALFAANRVKKVYGVEVVKDAIKD- 347
Query: 339 EKTVSRLPKSVDGNISWHNADNSIEPL--SWL---VGSDVLVVDPPRKGLDSSLVHAL 391
++ ++G + H E + W + ++ L+VDPPRKG D SL++ +
Sbjct: 348 ----AKYNAELNGFKNTHFELGKAEVVIPDWRKQGIEANALIVDPPRKGCDESLLNTI 401
>gi|381337049|ref|YP_005174824.1| tRNA (uracil-5-)-methyltransferase related enzyme [Leuconostoc
mesenteroides subsp. mesenteroides J18]
gi|356645015|gb|AET30858.1| tRNA (uracil-5-)-methyltransferase related enzyme [Leuconostoc
mesenteroides subsp. mesenteroides J18]
Length = 464
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 142/307 (46%), Gaps = 44/307 (14%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ V+ + G Y+ G+H +V I P+++ AV + R ++EL V
Sbjct: 135 GYRNKAQVPVQMINGKLETGFYRRGSHRLVPIEDFYIQDPKVDEAVRITRDILRELGVSA 194
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
Y+E+ + G +R++ A Y + ++ + ++ N++ K PNSD +AE
Sbjct: 195 YEEETKKGVIRHIM-----------ARRGYYSHELMVVIITNTK--KLPNSD---LIAEK 238
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
L ++ + SV N NVI G + GE D + + G D + P+SF
Sbjct: 239 L------SAKLPELKSVIHNINNHDTNVIMGQWNETIWGEDDIHDQLMGKDFVIGPNSFY 292
Query: 279 QANTRAFDIL--LRKLQKYVPYGASVTDLYAGAGVIGLSLA-AARKCRSVKCVE------ 329
Q N + L L + + V D Y+G G I LS+A +K V VE
Sbjct: 293 QVNPQTTSTLYALAAEKANLKPTDVVVDAYSGIGTITLSVADKVKKIYGVDVVEGAIEDA 352
Query: 330 --INKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSL 387
K +Q++ + V L + + W AD ++P +V+ VDPPRKGL L
Sbjct: 353 EKNAKNNQITNAEFV--LADAPEQMAKW--ADEGLKP-------NVVFVDPPRKGLTQEL 401
Query: 388 VHALQSI 394
+ A++++
Sbjct: 402 IDAVKAM 408
>gi|300118952|ref|ZP_07056663.1| RNA methyltransferase, TrmA family protein [Bacillus cereus SJ1]
gi|298723568|gb|EFI64299.1| RNA methyltransferase, TrmA family protein [Bacillus cereus SJ1]
Length = 458
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ + K
Sbjct: 293 PEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEA-IEDAKR 351
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 352 NAALNDMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|229171165|ref|ZP_04298759.1| Uncharacterized RNA methyltransferase [Bacillus cereus MM3]
gi|228612343|gb|EEK69571.1| Uncharacterized RNA methyltransferase [Bacillus cereus MM3]
Length = 465
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/352 (24%), Positives = 153/352 (43%), Gaps = 40/352 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 85 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRN 142
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 143 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEE 202
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 203 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 244
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG+ L G ++ +G I +++ SF Q N
Sbjct: 245 -----AKFPEVKSIVQNVNTKRTNVIFGDTTTVLYGSEYIYDFIGDIKFAISARSFYQVN 299
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 300 PEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 359
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I P + G +D +VVDPPRKG D +L++ +
Sbjct: 360 AA-LNNMTNAEFGVGEAEVVI-PKWYKEGIIADTMVVDPPRKGCDDALLNTI 409
>gi|52144916|ref|YP_081914.1| RNA methyltransferase [Bacillus cereus E33L]
gi|51978385|gb|AAU19935.1| RNA methyltransferase protein, trmA family (tRNA
(uracil-5-)-methyltransferase) [Bacillus cereus E33L]
Length = 458
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMETCLIQAEENDTLIQEVKRICEKHGISAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ + K
Sbjct: 293 PEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEA-IEDAKR 351
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 352 NAALNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|116618671|ref|YP_819042.1| tRNA (uracil-5-)-methyltransferase related enzyme [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
gi|116097518|gb|ABJ62669.1| tRNA (uracil-5-)-methyltransferase related enzyme [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
Length = 464
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 142/307 (46%), Gaps = 44/307 (14%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ V+ + G Y+ G+H +V I P+++ AV + R ++EL V
Sbjct: 135 GYRNKAQVPVQMINGKLETGFYRRGSHRLVPIEDFYIQDPKVDEAVRITRDILRELGVSA 194
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
Y+E+ + G +R++ A Y + ++ + ++ N++ K PNSD +AE
Sbjct: 195 YEEETKKGVIRHIM-----------ARRGYYSHELMVVIITNTK--KLPNSD---LIAEK 238
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
L ++ + SV N NVI G + GE D + + G D + P+SF
Sbjct: 239 L------SAKLPELKSVIHNINNHDTNVIMGQWNETIWGEDDIHDQLMGKDFVIGPNSFY 292
Query: 279 QANTRAFDIL--LRKLQKYVPYGASVTDLYAGAGVIGLSLA-AARKCRSVKCVE------ 329
Q N + L L + + V D Y+G G I LS+A +K V VE
Sbjct: 293 QVNPQTTSTLYALAAEKANLKPTDVVVDAYSGIGTITLSVADKVKKIYGVDVVEGAIEDA 352
Query: 330 --INKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSL 387
K +Q++ + V L + + W AD ++P +V+ VDPPRKGL L
Sbjct: 353 EKNAKNNQITNAEFV--LADAPEQMAKW--ADEGLKP-------NVVFVDPPRKGLTQEL 401
Query: 388 VHALQSI 394
+ A++++
Sbjct: 402 IDAVKAM 408
>gi|229101137|ref|ZP_04231903.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-28]
gi|228682265|gb|EEL36376.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-28]
Length = 465
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/352 (24%), Positives = 153/352 (43%), Gaps = 40/352 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 85 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRN 142
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 143 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEE 202
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 203 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 244
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG+ L G ++ +G I +++ SF Q N
Sbjct: 245 -----AKFPEVKSIVQNVNTKRTNVIFGDTTTVLYGSEYIYDFIGDIKFAISARSFYQVN 299
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 300 PEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 359
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I P + G +D +VVDPPRKG D +L++ +
Sbjct: 360 AA-LNNMTNAEFGVGEAEVVI-PKWYKEGIIADTMVVDPPRKGCDDALLNTI 409
>gi|418965024|ref|ZP_13516811.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
constellatus subsp. constellatus SK53]
gi|383343857|gb|EID22029.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
constellatus subsp. constellatus SK53]
Length = 461
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 84/338 (24%), Positives = 154/338 (45%), Gaps = 38/338 (11%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + G +++ +H+++ I P I+ + R ++ +++P
Sbjct: 134 GYRNKAQVPVRRVNGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKP 193
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R +L + +G++ + LV +R++ +E L E
Sbjct: 194 YDEQEKTGLIR-----------NLVVRRGHYSGEIMVILV-TTRSKIFRVEQLIERLVEA 241
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
I S+ N N IFG W+ L G + + D +A +F
Sbjct: 242 FPA----------IESIMQNINDQNTNTIFGKDWQTLHGRDYITDRMLNNDFQIAAPAFY 291
Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q NT + L + + A V D Y+G G IGLS+ A++ + V VE+ E+
Sbjct: 292 QVNTEMAEKLYQTAIDFSELAADDVVLDAYSGIGTIGLSV--AKQVKQVYGVEVIPEAVE 349
Query: 337 SFEKTVSRLPKSVDGNISWH----NADNSIEPLSWL-VGSDVLVVDPPRKGLDSSLVHAL 391
+ +K ++G + H +A+N++ S + DV++VDPPRKGL S + +
Sbjct: 350 NSQKNA-----EINGITNTHYVCDSAENAMANWSKQGIKPDVILVDPPRKGLTESFIES- 403
Query: 392 QSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQ 429
S+ +K +S + ++M ++ K L K VQ
Sbjct: 404 -SVSMEPKKIIYISCNPATMARDIKLYQELGYKLKKVQ 440
>gi|339634236|ref|YP_004725877.1| tRNA (uracil-5-)-methyltransferase-like protein [Weissella
koreensis KACC 15510]
gi|338854032|gb|AEJ23198.1| tRNA (uracil-5-)-methyltransferase related enzyme [Weissella
koreensis KACC 15510]
Length = 456
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 136/306 (44%), Gaps = 50/306 (16%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR G Y+ +H +V I P I+AA+ ++R ++ ++
Sbjct: 129 GYRNKAQVPVRKVRGQLTTGFYRRNSHQLVPIEDYYIQDPAIDAAIIVVRDLMRHYQLDA 188
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE+ TGD+R + + Y+ ++ +V +R K P +AE
Sbjct: 189 YDEETHTGDIRTIMVRRGYYSH-------------EMMVVIVTRRNKLP-------VAEM 228
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
L G + + S+ N + N+I G++ + L G + + G + P SF
Sbjct: 229 LVE--GIKKALPEVTSIIQNVNSEKTNLIMGSKNKTLWGADYITDTLWGKTFEIGPMSFY 286
Query: 279 QANTRAFDILL-RKLQKYVPYGAS-VTDLYAGAGVIGLSLAA-ARKCRSVKCVE------ 329
Q N + + L ++K G V D Y+G G I LS+AA AR+ V+ V+
Sbjct: 287 QVNPQTTEKLYSMAVEKAGLTGEELVIDAYSGIGTISLSVAAKARRVVGVEIVQGAVEDA 346
Query: 330 -----INKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLD 384
IN + FE L K+ D + W A+ ++P DV+ VDPPRKGL
Sbjct: 347 KRNAKINGIENVEFE-----LGKAEDKMVEWQAAE--LQP-------DVIFVDPPRKGLT 392
Query: 385 SSLVHA 390
L+ A
Sbjct: 393 PELIDA 398
>gi|322387793|ref|ZP_08061401.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus infantis ATCC
700779]
gi|419843887|ref|ZP_14367192.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus infantis
ATCC 700779]
gi|321141295|gb|EFX36792.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus infantis ATCC
700779]
gi|385702311|gb|EIG39456.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus infantis
ATCC 700779]
Length = 452
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 140/304 (46%), Gaps = 32/304 (10%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+ +R +A++ VR + G +++ +H+++ + +P I+ + LR ++ +++
Sbjct: 124 FKYRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFYIQNPVIDQVILALRDLLRRYDLK 183
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
PYDE +++G +R +L + +G++ + LV P ++E L E
Sbjct: 184 PYDEKEQSGLIR-----------NLVVRRGHHSGQIMVILVTTR-----PKIFRVEQLIE 227
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
+ + I SV N N IFG WR L G+ + + G D ++ +F
Sbjct: 228 QVIKQFPE------IVSVMQNINDQNTNAIFGKEWRVLYGQDYITDQMLGNDFQISGPAF 281
Query: 278 GQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+
Sbjct: 282 YQVNTEMAEKLYQTAIDFAELSEDDVVIDAYSGIGTIGLSV--AKHVKEVYGVEVTPEAV 339
Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQ 392
+ +K + L + + A+N+++ +WL + ++VDPPRKGL S + A
Sbjct: 340 ENSQKN-AELNGITNAHYVCDTAENAMK--NWLKEGIQPTAILVDPPRKGLTESFIKASA 396
Query: 393 SIGS 396
G+
Sbjct: 397 QTGA 400
>gi|225861011|ref|YP_002742520.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae Taiwan19F-14]
gi|298230452|ref|ZP_06964133.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae str. Canada MDR_19F]
gi|298255322|ref|ZP_06978908.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae str. Canada MDR_19A]
gi|298502952|ref|YP_003724892.1| TrmA family tRNA (uracil-5-)-methyltransferase [Streptococcus
pneumoniae TCH8431/19A]
gi|387788212|ref|YP_006253280.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae ST556]
gi|417696224|ref|ZP_12345403.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47368]
gi|418082955|ref|ZP_12720156.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA44288]
gi|418085099|ref|ZP_12722283.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47281]
gi|418091522|ref|ZP_12728665.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA44452]
gi|418093975|ref|ZP_12731103.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA49138]
gi|418119573|ref|ZP_12756525.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA18523]
gi|418141711|ref|ZP_12778524.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA13455]
gi|418152865|ref|ZP_12789604.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA16121]
gi|418171242|ref|ZP_12807868.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA19451]
gi|418196063|ref|ZP_12832542.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47688]
gi|418223186|ref|ZP_12849827.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 5185-06]
gi|419422895|ref|ZP_13963110.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA43264]
gi|419427008|ref|ZP_13967191.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 5652-06]
gi|419429188|ref|ZP_13969355.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA11856]
gi|419438134|ref|ZP_13978204.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA13499]
gi|419444753|ref|ZP_13984768.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA19923]
gi|419446896|ref|ZP_13986901.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 7879-04]
gi|419451370|ref|ZP_13991356.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae EU-NP02]
gi|419488964|ref|ZP_14028714.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA44386]
gi|419501785|ref|ZP_14041470.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47628]
gi|419518824|ref|ZP_14058431.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA08825]
gi|419528448|ref|ZP_14067990.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA17719]
gi|421272690|ref|ZP_15723534.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SPAR55]
gi|421288224|ref|ZP_15738987.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA58771]
gi|225726771|gb|ACO22622.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae Taiwan19F-14]
gi|298238547|gb|ADI69678.1| TrmA family tRNA (uracil-5-)-methyltransferase [Streptococcus
pneumoniae TCH8431/19A]
gi|332201499|gb|EGJ15569.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47368]
gi|353756868|gb|EHD37467.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA44288]
gi|353758794|gb|EHD39382.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47281]
gi|353765200|gb|EHD45747.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA44452]
gi|353765323|gb|EHD45868.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA49138]
gi|353789600|gb|EHD69993.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA18523]
gi|353805962|gb|EHD86236.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA13455]
gi|353817416|gb|EHD97618.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA16121]
gi|353835974|gb|EHE16063.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA19451]
gi|353861514|gb|EHE41451.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47688]
gi|353879312|gb|EHE59138.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 5185-06]
gi|379137954|gb|AFC94745.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae ST556]
gi|379538139|gb|EHZ03320.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA13499]
gi|379551136|gb|EHZ16231.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA11856]
gi|379564471|gb|EHZ29467.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA17719]
gi|379572446|gb|EHZ37403.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA19923]
gi|379587421|gb|EHZ52269.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA43264]
gi|379587857|gb|EHZ52704.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA44386]
gi|379601020|gb|EHZ65797.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47628]
gi|379614436|gb|EHZ79146.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 7879-04]
gi|379618461|gb|EHZ83136.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 5652-06]
gi|379623075|gb|EHZ87709.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae EU-NP02]
gi|379641803|gb|EIA06338.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA08825]
gi|395875799|gb|EJG86877.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SPAR55]
gi|395886787|gb|EJG97803.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA58771]
Length = 543
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 139/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVVLVTTR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGLSV--AKHVKEVYGVELIPEA-VE 340
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
K ++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 341 NSKKNAQLNNISNAHYVCDTAENAMK--NWLKDGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|229549174|ref|ZP_04437899.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis ATCC
29200]
gi|255971891|ref|ZP_05422477.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T1]
gi|256957937|ref|ZP_05562108.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis DS5]
gi|257079874|ref|ZP_05574235.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis JH1]
gi|257421676|ref|ZP_05598666.1| RNA methyltransferase [Enterococcus faecalis X98]
gi|294780400|ref|ZP_06745766.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
PC1.1]
gi|300860697|ref|ZP_07106784.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TUSoD Ef11]
gi|307269643|ref|ZP_07550978.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX4248]
gi|312953733|ref|ZP_07772567.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0102]
gi|384519500|ref|YP_005706805.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
62]
gi|397700897|ref|YP_006538685.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
D32]
gi|422693486|ref|ZP_16751500.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0031]
gi|422693997|ref|ZP_16752002.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX4244]
gi|422707216|ref|ZP_16764913.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0043]
gi|422710862|ref|ZP_16767797.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0027]
gi|422725719|ref|ZP_16782176.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0312]
gi|422869660|ref|ZP_16916173.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1467]
gi|428767856|ref|YP_007153967.1| RNA methyltransferase, TrmA family [Enterococcus faecalis str.
Symbioflor 1]
gi|229305411|gb|EEN71407.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis ATCC
29200]
gi|255962909|gb|EET95385.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T1]
gi|256948433|gb|EEU65065.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis DS5]
gi|256987904|gb|EEU75206.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis JH1]
gi|257163500|gb|EEU93460.1| RNA methyltransferase [Enterococcus faecalis X98]
gi|294452500|gb|EFG20936.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
PC1.1]
gi|300849736|gb|EFK77486.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TUSoD Ef11]
gi|306514033|gb|EFM82620.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX4248]
gi|310628360|gb|EFQ11643.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0102]
gi|315035082|gb|EFT47014.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0027]
gi|315148672|gb|EFT92688.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX4244]
gi|315151812|gb|EFT95828.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0031]
gi|315155574|gb|EFT99590.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0043]
gi|315159336|gb|EFU03353.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0312]
gi|323481633|gb|ADX81072.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
62]
gi|329570604|gb|EGG52323.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1467]
gi|397337536|gb|AFO45208.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
D32]
gi|427186029|emb|CCO73253.1| RNA methyltransferase, TrmA family [Enterococcus faecalis str.
Symbioflor 1]
Length = 456
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/361 (23%), Positives = 147/361 (40%), Gaps = 58/361 (16%)
Query: 54 CPHFQSCSGCTHEFNLHRPII------VDEATDFFKSIGLLDF----TFDSCRLYGWRCR 103
CP +++C GC + ++ + + +A + FK ++ T + +R +
Sbjct: 76 CPVYETCGGCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMENPWNYRNK 135
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A+ +R GLYQ +H +V I +C P + L + + YDE
Sbjct: 136 AQFQLRQIDGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNNFQLPIYDERK 195
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-----ESLAEF 218
+G R + + V + G+VQ+ + ++++K P +K+ E L E
Sbjct: 196 NSGIFRTLMVRVGI-----------QTGEVQVVFI--TQSQKFPQKEKMVRAINEQLPEV 242
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ S+ N Q +++ G+ HL G+ E++ + L+P +F
Sbjct: 243 V--------------SIMQNVQNKKTSLVMGDDTLHLWGKESIEEHINDVVFDLSPRAFF 288
Query: 279 QANTRAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAA-ARKCRSVKCVEINKESQ 335
Q N ++L + K + +V D Y G G IGLSLA A + R + + +
Sbjct: 289 QLNPEQTEVLYNEGIKALDLQPNETVVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDD- 347
Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWL---VGSDVLVVDPPRKGLDSSLVHA 390
+R G + H A + E L W D +VVDPPR GLD L+ A
Sbjct: 348 -------ARFNAKRLGVTNTHYAVGTAEDLLPKWFKEGFKPDAIVVDPPRTGLDRKLLTA 400
Query: 391 L 391
L
Sbjct: 401 L 401
>gi|152974152|ref|YP_001373669.1| RNA methyltransferase [Bacillus cytotoxicus NVH 391-98]
gi|152022904|gb|ABS20674.1| RNA methyltransferase, TrmA family [Bacillus cytotoxicus NVH
391-98]
Length = 458
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 88/354 (24%), Positives = 154/354 (43%), Gaps = 44/354 (12%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIG-LLDF----TFDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L D + +R
Sbjct: 78 ECPVYNQCGGCQLQHVTYEGQLAAK--QKQVRDVMQRIGGLHDVPVHPVLGMENPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ + + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMETCLIQAEENDTLIQEVKRICETHGIRAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL--ESLAEFLW 220
G LR+V MA RY + +I LV+ +R + PN + E A+F
Sbjct: 196 RHKGTLRHV-MA------------RYGHVTGEIMLVFITRTAELPNKKAIIEEITAKF-- 240
Query: 221 RNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQA 280
+ S+ N T NVIFG L G ++ +G I +++ SF Q
Sbjct: 241 ---------PNVKSIVQNVNTKRTNVIFGETTTVLYGSEYIYDFIGDIQFAISARSFYQV 291
Query: 281 NTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
N +L K +Y + T + A G+ +SL A+K + V VEI E+ + K
Sbjct: 292 NPEQTKVLYDKALEYAQLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEA-IEDAK 350
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + + A+ I +W V +D +VVDPPRKG D +L++ +
Sbjct: 351 RNAELNNMTNAEFAVGEAEVVIP--NWYKEGVIADTIVVDPPRKGCDEALLNTI 402
>gi|421767549|ref|ZP_16204298.1| RNA methyltransferase, TrmA family [Lactococcus garvieae DCC43]
gi|407623967|gb|EKF50758.1| RNA methyltransferase, TrmA family [Lactococcus garvieae DCC43]
Length = 450
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 138/308 (44%), Gaps = 59/308 (19%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H++V I + I+A V +R+ + LN++PY
Sbjct: 128 YRNKAQVPVRVVNGRTETGFFRKNSHDLVPIHDFYIQNTEIDALVNQVRESLITLNIQPY 187
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE + G +R ++ Y +G++ + LV +K L+E +
Sbjct: 188 DEKTKRGIVR-----------NIVIRRGYHSGQMMLVLVV--------TKEKFAGLSELV 228
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ R+ + S + TST N IFG+++ L G+ +++ G D ++ +F Q
Sbjct: 229 -----AEYRDK-VTSFQLSVNTSTGNAIFGSKFELLSGKDYITDSMLGKDFQISARAFYQ 282
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + A V D Y+G G IGL + A K V +EI
Sbjct: 283 VNTAQAEKLYQLAYDFADLKAEDVVIDAYSGIGTIGLGM--ADKVAQVYGMEI------- 333
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWLVG---------------SDVLVVDPPRKG 382
+P++V+ N + A N I+ + VG DV+ VDPPRKG
Sbjct: 334 -------IPEAVE-NAKVNAALNGIQNAHYEVGPAEEVMPKWSQDNIQPDVIFVDPPRKG 385
Query: 383 LDSSLVHA 390
LD S + A
Sbjct: 386 LDESFIKA 393
>gi|30260503|ref|NP_842880.1| RNA methyltransferase [Bacillus anthracis str. Ames]
gi|47525600|ref|YP_016949.1| RNA methyltransferase [Bacillus anthracis str. 'Ames Ancestor']
gi|49183346|ref|YP_026598.1| RNA methyltransferase [Bacillus anthracis str. Sterne]
gi|65317755|ref|ZP_00390714.1| COG2265: SAM-dependent methyltransferases related to tRNA
(uracil-5-)-methyltransferase [Bacillus anthracis str.
A2012]
gi|167634215|ref|ZP_02392537.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0442]
gi|167640112|ref|ZP_02398379.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0193]
gi|170688363|ref|ZP_02879572.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0465]
gi|177653642|ref|ZP_02935781.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0174]
gi|190567579|ref|ZP_03020492.1| RNA methyltransferase, TrmA family [Bacillus anthracis str.
Tsiankovskii-I]
gi|227812998|ref|YP_002813007.1| TrmA family RNA methyltransferase [Bacillus anthracis str. CDC 684]
gi|229601940|ref|YP_002864948.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0248]
gi|254686717|ref|ZP_05150575.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
CNEVA-9066]
gi|254724793|ref|ZP_05186576.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
A1055]
gi|254742321|ref|ZP_05200007.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
Kruger B]
gi|254756096|ref|ZP_05208125.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
Vollum]
gi|254761914|ref|ZP_05213763.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
Australia 94]
gi|386734182|ref|YP_006207363.1| RNA methyltransferase [Bacillus anthracis str. H9401]
gi|421507729|ref|ZP_15954647.1| RNA methyltransferase [Bacillus anthracis str. UR-1]
gi|421638900|ref|ZP_16079494.1| RNA methyltransferase [Bacillus anthracis str. BF1]
gi|50401540|sp|Q81ZD6.1|Y333_BACAN RecName: Full=Uncharacterized RNA methyltransferase
BA_0333/GBAA_0333/BAS0318
gi|30253871|gb|AAP24366.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. Ames]
gi|47500748|gb|AAT29424.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. 'Ames
Ancestor']
gi|49177273|gb|AAT52649.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. Sterne]
gi|167511923|gb|EDR87302.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0193]
gi|167530529|gb|EDR93244.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0442]
gi|170667695|gb|EDT18449.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0465]
gi|172081222|gb|EDT66297.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0174]
gi|190561366|gb|EDV15338.1| RNA methyltransferase, TrmA family [Bacillus anthracis str.
Tsiankovskii-I]
gi|227007157|gb|ACP16900.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. CDC
684]
gi|229266348|gb|ACQ47985.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0248]
gi|384384034|gb|AFH81695.1| RNA methyltransferase [Bacillus anthracis str. H9401]
gi|401822164|gb|EJT21316.1| RNA methyltransferase [Bacillus anthracis str. UR-1]
gi|403393815|gb|EJY91057.1| RNA methyltransferase [Bacillus anthracis str. BF1]
Length = 458
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ + K
Sbjct: 293 PEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEA-IEDAKR 351
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 352 NAALNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|421894211|ref|ZP_16324702.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pediococcus
pentosaceus IE-3]
gi|385273039|emb|CCG90074.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pediococcus
pentosaceus IE-3]
Length = 455
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 87/340 (25%), Positives = 151/340 (44%), Gaps = 67/340 (19%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR G ++ +H++V I P I+ + +R ++E ++P
Sbjct: 129 GYRNKAQIPVRKIKGKLQTGFFKRNSHDLVPIEDFYIQDPVIDKVIVEVRDILREFYIDP 188
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
Y E + G +R ++ R+G++ + L+ +R + P+ L + E
Sbjct: 189 YREAENKGIIR-----------NIMVRRGRRSGQIMVVLI--TRTKDVPH---LAEITEA 232
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ G + SV N NVI G+ R L GE+ + + G+D ++ SF
Sbjct: 233 IAAIDG-------VVSVIQNINYKQTNVIMGDEDRVLAGESVIHDELLGLDFIISAHSFY 285
Query: 279 QANTRAFDILLRKLQKYVPYGASVT------DLYAGAGVIGLSLAAARKCRSVKCVEINK 332
Q N I KL + A +T D+Y+G G I SLA A+ + V VEI K
Sbjct: 286 QVNP----IQTEKLYQLAIDKAGLTGEETVIDVYSGIGTI--SLAMAKAAKKVYGVEIVK 339
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVD 377
E+ + N +NA N+ ++VG DV+VVD
Sbjct: 340 EA-----------VQDAKINAFQNNASNT----EFVVGKAEEQMQKWQEDGLKPDVVVVD 384
Query: 378 PPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKR 417
PPRKGLD S++ A ++G ++ +S + +++V++ R
Sbjct: 385 PPRKGLDQSVIDA--TVGMKPKRVVYVSCNPATLVRDIDR 422
>gi|419780418|ref|ZP_14306268.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
SK100]
gi|383185577|gb|EIC78073.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
SK100]
Length = 452
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/322 (25%), Positives = 153/322 (47%), Gaps = 34/322 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ V +LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGILETGFFRKNSHDLMPLEDFFIQDPVIDQVVVVLRDLLRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + G++ + LV P +++ L E +
Sbjct: 186 DEQEQSGLIR-----------NLVVRRGHYLGQIMVILVTTR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG W+ L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWKTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT+ + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTQMAEKLYQTAIDFAELKEDDVVIDAYSGIGTIGLSV--AKHVKEVYGVEVIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K + L ++ + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 342 SQKNAA-LNNIINAHYVCDTAENAMK--NWLKEGIQPTVILVDPPRKGLIESFIKASAQT 398
Query: 395 GSAERKAKSLSESSSSMVKEEK 416
G A+R A +S + ++M ++ K
Sbjct: 399 G-ADRIA-YISCNVATMARDIK 418
>gi|225854529|ref|YP_002736041.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae JJA]
gi|421236169|ref|ZP_15692770.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2071004]
gi|444388298|ref|ZP_21186285.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PCS125219]
gi|444389840|ref|ZP_21187755.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PCS70012]
gi|444392417|ref|ZP_21190148.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PCS81218]
gi|444395466|ref|ZP_21193010.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0002]
gi|444397488|ref|ZP_21194971.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0006]
gi|444400665|ref|ZP_21198047.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0007]
gi|444408703|ref|ZP_21205336.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0010]
gi|444410353|ref|ZP_21206893.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0076]
gi|444413203|ref|ZP_21209519.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0153]
gi|444417332|ref|ZP_21213377.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0360]
gi|225722765|gb|ACO18618.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae JJA]
gi|395605088|gb|EJG65220.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2071004]
gi|444249912|gb|ELU56397.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PCS125219]
gi|444256303|gb|ELU62641.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PCS70012]
gi|444258109|gb|ELU64439.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0002]
gi|444260145|gb|ELU66453.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0006]
gi|444263466|gb|ELU69634.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PCS81218]
gi|444265636|gb|ELU71633.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0007]
gi|444269530|gb|ELU75337.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0010]
gi|444273362|gb|ELU79035.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0153]
gi|444277787|gb|ELU83284.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0076]
gi|444283983|gb|ELU89151.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0360]
Length = 543
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 139/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVVLVTTR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGLSV--AKHVKEVYGVELIPEA-VE 340
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
K ++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 341 NSKKNAQLNNISNAHYVCDTAENAMK--NWLKDGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|420161873|ref|ZP_14668635.1| TrmA family tRNA (uracil-5-)-methyltransferase [Weissella koreensis
KCTC 3621]
gi|394744880|gb|EJF33799.1| TrmA family tRNA (uracil-5-)-methyltransferase [Weissella koreensis
KCTC 3621]
Length = 456
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 136/306 (44%), Gaps = 50/306 (16%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR G Y+ +H +V I P I+AA+ ++R ++ ++
Sbjct: 129 GYRNKAQVPVRKVRGQLTTGFYRRNSHQLVPIEDYYIQDPAIDAAIIVVRDLMRHYQLDA 188
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE+ TGD+R + + Y+ ++ +V +R K P +AE
Sbjct: 189 YDEETHTGDIRTIMVRRGYYSH-------------EMMVVIVTRRNKLP-------VAEM 228
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
L G + + S+ N + N+I G++ + L G + + G + P SF
Sbjct: 229 LVE--GIKKALPEVTSIIQNVNSEKTNLIMGSKNKTLWGADYITDTLWGKTFEIGPMSFY 286
Query: 279 QANTRAFDILL-RKLQKYVPYGAS-VTDLYAGAGVIGLSLAA-ARKCRSVKCVE------ 329
Q N + + L ++K G V D Y+G G I LS+AA AR+ V+ V+
Sbjct: 287 QVNPQTTEKLYSMAVEKAGLTGEELVIDAYSGIGTISLSVAAKARRVVGVEIVQDAVEDA 346
Query: 330 -----INKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLD 384
IN + FE L K+ D + W A+ ++P DV+ VDPPRKGL
Sbjct: 347 KRNAKINGIENVEFE-----LGKAEDKMVEWQAAE--LQP-------DVIFVDPPRKGLT 392
Query: 385 SSLVHA 390
L+ A
Sbjct: 393 PELIDA 398
>gi|418080483|ref|ZP_12717695.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 6735-05]
gi|418105096|ref|ZP_12742154.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA44500]
gi|418135088|ref|ZP_12771945.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA11426]
gi|353753023|gb|EHD33647.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 6735-05]
gi|353777161|gb|EHD57634.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA44500]
gi|353902325|gb|EHE77855.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA11426]
Length = 505
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 138/302 (45%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +HN++ + P I+ V LR + +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLFRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE + +G +R +L + +G++ + LV P +++ L E +
Sbjct: 186 DEKEHSGLIR-----------NLVVRRGHYSGQIMVVLVTTR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGLSV--AKHVKEVYGVELIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K ++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 342 SKKN-AQLNNISNAHYVCDTAENAMK--NWLKDGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|229188589|ref|ZP_04315628.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 10876]
gi|228594778|gb|EEK52558.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 10876]
Length = 454
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 84/353 (23%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC ++E L + D + IG L + +R
Sbjct: 74 ECPVYNQCGGCQLQHLSYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMQNPWVYRN 131
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 132 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDILIQEVKRICEKHGITAYNEE 191
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 192 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 233
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 234 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 288
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 289 PEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 348
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 349 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 398
>gi|291521671|emb|CBK79964.1| 23S rRNA m(5)U-1939 methyltransferase [Coprococcus catus GD/7]
Length = 458
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 93/362 (25%), Positives = 152/362 (41%), Gaps = 67/362 (18%)
Query: 54 CPHFQSCSGC-THEFNLHRPIIVDE--ATDFFKSIGLL-DFTFDSC----RLYGWRCRAK 105
CPH +SC GC + R + E + +G + D+ Y +R +A+
Sbjct: 76 CPHARSCGGCQIQHLSYERQLAFKENKVRNLLSRVGHIEDYVMHPIIGMEHPYYYRNKAQ 135
Query: 106 LAV-RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
V G + G Y TH +VD HC P + ++++ + + ++ PYDE
Sbjct: 136 FPVGLGKDGQIVTGFYAGHTHVIVDSAHCCIQAPVNEQLLVIVKKWMTDHDIAPYDETTH 195
Query: 165 TGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGG 224
G +R++ V ++ ++ + L+ N + K P+S ESL E L G
Sbjct: 196 KGLVRHILTRVG-----------FKTKEIMVCLIINGK--KLPHS---ESLVEALREIPG 239
Query: 225 SRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRA 284
+ S+ N NVI G++ L G+ + +G + ++P SF Q N
Sbjct: 240 -------MTSISFNINQDKTNVILGSKVVTLWGQDYITDYIGDVRYQISPLSFYQVNPVQ 292
Query: 285 FDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTV 342
+ L K+ G + + DLY G G I SL A+K + V VEI
Sbjct: 293 TEKLYGAALKFANPGPNDVIWDLYCGIGTI--SLFMAKKAKQVYGVEI------------ 338
Query: 343 SRLPKSVDGNISWHNADNSIEPLSWLVG----------------SDVLVVDPPRKGLDSS 386
+P+++D + + A N I + VG +D++VVDPPRKG D S
Sbjct: 339 --VPQAID-DAKRNAAINDIHNAEFYVGKAEEVLPQTYEREHIHADIIVVDPPRKGCDES 395
Query: 387 LV 388
L+
Sbjct: 396 LL 397
>gi|212638138|ref|YP_002314658.1| methyltransferase [Anoxybacillus flavithermus WK1]
gi|212559618|gb|ACJ32673.1| Methyltransferase [Anoxybacillus flavithermus WK1]
Length = 456
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 132/298 (44%), Gaps = 34/298 (11%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ V + G Y+E +H+++D+ C + V+ ++Q ++ N+ Y
Sbjct: 129 YRNKAQVPVGEREGGLVAGFYKERSHDIIDMDTCLIQQEMNDIVVQTVKQICEQYNIPAY 188
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEF 218
+E G LR++ MA RY ++ +V +R E+ P+ +K+ E++ +
Sbjct: 189 NEQTHKGLLRHI-MA------------RYGATTKEVMVVLITRTEELPHKNKIVEAIVK- 234
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
R + S+ N NVI G + R L G ++ +G I +++ SF
Sbjct: 235 ---------RVPNVKSIVQNINPKRTNVIMGEQTRVLWGSEYIYDYIGDIQFAISARSFY 285
Query: 279 QANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q N +L K +Y +V D Y G G I L L A+ + V VE+ E
Sbjct: 286 QVNPEQTKVLYEKALEYAELTGEETVIDAYCGIGTISLFL--AKNAKKVYGVEVVPE--- 340
Query: 337 SFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ E + N+ + + + W V +D +VVDPPRKG D SL+ +
Sbjct: 341 AIEDAKRNAELNGMTNVEFAVGEAEVVIPKWYEQGVKADCIVVDPPRKGCDESLLQTI 398
>gi|227432075|ref|ZP_03914088.1| TrmA family tRNA (uracil-5-)-methyltransferase [Leuconostoc
mesenteroides subsp. cremoris ATCC 19254]
gi|227352157|gb|EEJ42370.1| TrmA family tRNA (uracil-5-)-methyltransferase [Leuconostoc
mesenteroides subsp. cremoris ATCC 19254]
Length = 464
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 142/307 (46%), Gaps = 44/307 (14%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ V+ + G Y+ G+H +V I P+++ AV + R ++EL V
Sbjct: 135 GYRNKAQVPVQMINGKLETGFYRRGSHRLVPIEDFYIQDPKVDEAVRITRDILRELGVSA 194
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
Y+E+ + G +R++ A Y + ++ + ++ N++ K PNSD +AE
Sbjct: 195 YEEETKKGVIRHIM-----------ARRGYYSHELMVVIITNTK--KLPNSD---LIAEK 238
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
L ++ + SV N NVI G + GE D + + G D + P+SF
Sbjct: 239 L------SAKLPELKSVIHNINNHDTNVIMGQWNETIWGEDDIHDQLMGKDFVIGPNSFY 292
Query: 279 QAN--TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLA-AARKCRSVKCVE------ 329
Q N T A L + + V D Y+G G I LS+A +K V VE
Sbjct: 293 QVNPQTTATLYALAAEKANLKPTDVVVDAYSGIGTITLSVADKVKKIYGVDVVEGAIEDA 352
Query: 330 --INKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSL 387
K +Q++ + V L + + W AD ++P +V+ VDPPRKGL L
Sbjct: 353 EKNAKNNQITNAEFV--LADAPEQMAKW--ADEGLKP-------NVVFVDPPRKGLTQEL 401
Query: 388 VHALQSI 394
+ A++++
Sbjct: 402 IDAVKAM 408
>gi|340356361|ref|ZP_08679010.1| 23S rRNA (uracil-5-)-methyltransferase [Sporosarcina newyorkensis
2681]
gi|339621454|gb|EGQ26012.1| 23S rRNA (uracil-5-)-methyltransferase [Sporosarcina newyorkensis
2681]
Length = 455
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/296 (26%), Positives = 131/296 (44%), Gaps = 30/296 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R ++++ + G Y+ TH +VD C + + +L++ I++L +E Y
Sbjct: 129 YRNKSQIPFDTEDGRVIAGFYKTRTHQIVDTDVCIIQTTEADELMAMLKRKIQQLGIETY 188
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE G LR++ + R Q+ +V +R++K P ++ L +
Sbjct: 189 DERTHKGMLRHLIV-------------RKARQTDQVMVVLVTRHKKFPQKQEVVELIQQE 235
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
N + SV N T+ NVI GN +L G + +G I+ ++ SF Q
Sbjct: 236 IPN---------VTSVMQNINTANTNVIMGNETINLYGADVIIDRIGDIEFEISARSFYQ 286
Query: 280 ANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
N ++L ++ Y +V D Y G G I L L A++ + V VEI ++ +
Sbjct: 287 VNPVQTEVLYQQALDYAGLTGDETVIDAYCGIGTISLFL--AKQAKEVYGVEIVPQA-IQ 343
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS--DVLVVDPPRKGLDSSLVHAL 391
K + L + + A++ I P + G DVLVVDPPRKG D L+ +
Sbjct: 344 DAKRNAELNGITNTHFEAGAAEDVI-PKWYAEGKRFDVLVVDPPRKGCDEKLLETI 398
>gi|306825259|ref|ZP_07458601.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sp. oral
taxon 071 str. 73H25AP]
gi|304432695|gb|EFM35669.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sp. oral
taxon 071 str. 73H25AP]
Length = 451
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/302 (24%), Positives = 139/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ + LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFFIQDPVIDQVIVALRDLLRRYDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P ++E L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVILVTTR-----PKVFRVEQLIEQI 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG W+ L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWKTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKEDDVVIDAYSGIGTIGLSV--AKHVKEVYGVEVIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K + L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 342 SQKNAA-LNNITNAHYVCDTAENAMK--NWLKEGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|420144141|ref|ZP_14651629.1| tRNA methyltransferase [Lactococcus garvieae IPLA 31405]
gi|391855593|gb|EIT66142.1| tRNA methyltransferase [Lactococcus garvieae IPLA 31405]
Length = 475
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/296 (26%), Positives = 135/296 (45%), Gaps = 35/296 (11%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H++V I +P I+ V +R+ + +LN+ PY
Sbjct: 153 YRNKAQVPVRSVNGKTETGFFRKNSHDLVPIRDFYIQNPEIDELVNQVRESLIKLNIPPY 212
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE + G +R ++ + +G++ + LV +K L+E +
Sbjct: 213 DEQTKRGIVR-----------NIVIRRGHHSGQMMLILVV--------AKEKFTGLSELV 253
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ S + TST N IFG++++ L G+ +++ G D ++ +F Q
Sbjct: 254 AEYSNK------VDSFQLSINTSTGNAIFGSKFKLLSGKDYITDSMLGKDFQISARAFYQ 307
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + A V D Y+G G IGL + A K V +EI E+ +
Sbjct: 308 VNTAQAEKLYQLAYDFADLKAEDVVIDAYSGIGTIGLGM--ADKVAQVYGMEIIPEA-VE 364
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHA 390
KT + L + A+ + WL + DV+ VDPPRKGLD S + A
Sbjct: 365 NAKTNAALNGITNAQYEVGPAEEVMP--QWLQDGIQPDVIFVDPPRKGLDESFIKA 418
>gi|404416612|ref|ZP_10998429.1| RNA methyltransferase [Staphylococcus arlettae CVD059]
gi|403491016|gb|EJY96544.1| RNA methyltransferase [Staphylococcus arlettae CVD059]
Length = 457
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 85/360 (23%), Positives = 154/360 (42%), Gaps = 57/360 (15%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDFTF--DSCRLYG-WRCRAKLA 107
C ++ C GC + ++ + ++ F + T D+ + WR R K
Sbjct: 74 CVYYYKCGGCQLQHMSYDAQLAMKKEQVITLFHRKANFNSTIIDDTIGMTNPWRYRNKSQ 133
Query: 108 V---RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+ + ++ ++G Y++ +H+++++ C + + ++Q ELN+ Y+E +
Sbjct: 134 IPIGKNSNDQAIMGFYRQRSHDIINMDECLIQDEQHQHMMNFIKQCCNELNISIYNEKTK 193
Query: 165 TGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGG 224
G LR+ L + + + LV N + + P + +L
Sbjct: 194 KGLLRH-----------LVVRTGHHTNDLMVILVTNGK--QFPQAQQL-----------I 229
Query: 225 SRSREHY--IHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
SR +++ + S+ N T+ +NVI G++ L GE + + I ++ SF Q N+
Sbjct: 230 SRLIQNFPQVTSIKQNINTTHSNVIMGDQSYTLYGEDKIIDTLSEITFKISDQSFYQINS 289
Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKE------- 333
+ L +K Y + V D Y G G IGL +A K + V VE+ KE
Sbjct: 290 AQTEKLYQKAIDYANLAGNEIVLDTYCGIGTIGLYMAP--KAKHVYGVEVVKEAIEDAKQ 347
Query: 334 -SQLS-FEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHAL 391
+QL+ FE T K+ D + W V DV++VDPPRKG D + ++ L
Sbjct: 348 NAQLNEFENTTFVCGKAEDVILQWKQEG---------VHPDVVMVDPPRKGCDETFLNTL 398
>gi|395238965|ref|ZP_10416865.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lactobacillus
gigeriorum CRBIP 24.85]
gi|394476969|emb|CCI86842.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lactobacillus
gigeriorum CRBIP 24.85]
Length = 449
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 85/347 (24%), Positives = 155/347 (44%), Gaps = 71/347 (20%)
Query: 91 TFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQG 150
T S + G+R +A++ VR S IG +++ +H++V + + P I+ + +R
Sbjct: 115 TVASPKEIGYRNKAQVPVRMVSGKLEIGFFRKHSHDLVPLENFFTTDPEIDRVLLAVRDL 174
Query: 151 IKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYR-NGKVQITLVWNSRNEKSPNS 209
++E+ V YDE G++RY+++ R R G++ + L+ + +
Sbjct: 175 LREMKVPAYDELHHKGEVRYLEV------------RRSRATGEIMVILICLHK-----DF 217
Query: 210 DKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGID 269
+L LA+ + + G + SV N NVI G L G+ + +G I
Sbjct: 218 PQLRKLAKAISQISG-------VVSVVLNHNPQKTNVILGKHDYLLAGKAQIVDKIGDIS 270
Query: 270 ISLAPSSFGQANT----RAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSV 325
S++P SF Q N+ R +D+ ++ Q + V D Y+G G IGLS+ A+ + V
Sbjct: 271 FSISPKSFFQINSLQTPRLYDLAIK--QADLKPSDVVIDAYSGIGTIGLSV--AKHVKEV 326
Query: 326 KCVEINKESQLSFEKTVSRLPKSVDGNISWHNAD---NSIEPLSWLVG------------ 370
+ +EI +D + NA+ N I S++ G
Sbjct: 327 RGIEI------------------IDDAVRDANANAQLNQIHNASYVTGKAEEIMPKWAES 368
Query: 371 ---SDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKE 414
+DV+ VDPPRKGL + A ++ + +K +S + ++ V++
Sbjct: 369 GLQTDVIFVDPPRKGLTEEFIKA--AVATQPKKVVYISCNPATQVRD 413
>gi|149006286|ref|ZP_01829998.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP18-BS74]
gi|307127423|ref|YP_003879454.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 670-6B]
gi|418225454|ref|ZP_12852083.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae NP112]
gi|419466470|ref|ZP_14006353.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA05248]
gi|419512421|ref|ZP_14052055.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA05578]
gi|421283216|ref|ZP_15734003.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA04216]
gi|421298490|ref|ZP_15749178.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA60080]
gi|147762063|gb|EDK69025.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP18-BS74]
gi|306484485|gb|ADM91354.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 670-6B]
gi|353882762|gb|EHE62573.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae NP112]
gi|379544593|gb|EHZ09737.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA05248]
gi|379636891|gb|EIA01449.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA05578]
gi|395881179|gb|EJG92228.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA04216]
gi|395902446|gb|EJH13379.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA60080]
Length = 543
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/302 (24%), Positives = 139/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVVLVTTR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + + D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKKDDVIIDAYSGIGTIGLSV--AKHVKEVYGVELIPEA-VE 340
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
K ++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 341 NSKKNAQLNNISNAHYVCDTAENAMK--NWLKDGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|343525700|ref|ZP_08762655.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
constellatus subsp. pharyngis SK1060 = CCUG 46377]
gi|343395970|gb|EGV08508.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
constellatus subsp. pharyngis SK1060 = CCUG 46377]
Length = 464
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 84/338 (24%), Positives = 154/338 (45%), Gaps = 38/338 (11%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + G +++ +H+++ I P I+ + R ++ +++P
Sbjct: 53 GYRNKAQVPVRRVNGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKP 112
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R +L + +G++ + LV +R++ +E L E
Sbjct: 113 YDEQEKTGLIR-----------NLVVRRGHYSGEIMVILV-TTRSKIFRVEQLIERLVEA 160
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
I S+ N N IFG W+ L G + + D +A +F
Sbjct: 161 FPA----------IESIMQNINDQNTNTIFGKDWQTLHGRDYITDRMLNNDFQIAAPAFY 210
Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q NT + L + + A V D Y+G G IGLS+ A++ + V VE+ E+
Sbjct: 211 QVNTEMAEKLYQTAIDFSELAADDVVLDAYSGIGTIGLSV--AKQVKQVYGVEVIPEAVE 268
Query: 337 SFEKTVSRLPKSVDGNISWH----NADNSIEPLSWL-VGSDVLVVDPPRKGLDSSLVHAL 391
+ +K ++G + H +A+N++ S + DV++VDPPRKGL S + +
Sbjct: 269 NSQKNA-----EINGITNTHYVCDSAENAMANWSKQDIKPDVILVDPPRKGLTESFIES- 322
Query: 392 QSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQ 429
S+ +K +S + ++M ++ K L K VQ
Sbjct: 323 -SVSMEPKKIIYISCNPATMARDIKLYQELGYKLKKVQ 359
>gi|307288671|ref|ZP_07568652.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0109]
gi|422703178|ref|ZP_16761003.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1302]
gi|306500425|gb|EFM69761.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0109]
gi|315165278|gb|EFU09295.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1302]
Length = 456
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 85/361 (23%), Positives = 146/361 (40%), Gaps = 58/361 (16%)
Query: 54 CPHFQSCSGCTHEFNLHRPII------VDEATDFFKSIGLLDF----TFDSCRLYGWRCR 103
CP +++C GC + ++ + + +A + FK ++ T + +R +
Sbjct: 76 CPVYETCGGCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMENPWNYRNK 135
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A+ +R GLYQ +H +V I +C P + L + + + YDE
Sbjct: 136 AQFQLRQIDGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERK 195
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-----ESLAEF 218
+G R + + V + G+VQ+ + S+ K P +K+ E L E
Sbjct: 196 NSGIFRTLMVRVGI-----------QTGEVQVVFITQSK--KFPQKEKMVRAINEQLPEV 242
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ S+ N Q +++ G+ HL G+ E++ + L+P +F
Sbjct: 243 V--------------SIMQNVQNKKTSLVMGDDTLHLWGKESIEEHINDVVFDLSPRAFF 288
Query: 279 QANTRAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAA-ARKCRSVKCVEINKESQ 335
Q N ++L + K + +V D Y G G IGL+LA A + R + + +
Sbjct: 289 QLNPEQTEVLYNEGIKALDLQPNETVVDAYCGVGTIGLNLAKQAHQVRGMDTIPAAIDD- 347
Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWL---VGSDVLVVDPPRKGLDSSLVHA 390
+R G + H A + E L W D +VVDPPR GLD L+ A
Sbjct: 348 -------ARFNAKRLGVTNTHYAVGTAEDLLPKWFKEGFKPDAIVVDPPRTGLDRKLLTA 400
Query: 391 L 391
L
Sbjct: 401 L 401
>gi|258539292|ref|YP_003173791.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus Lc 705]
gi|385834931|ref|YP_005872705.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
rhamnosus ATCC 8530]
gi|257150968|emb|CAR89940.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus Lc 705]
gi|355394422|gb|AER63852.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
rhamnosus ATCC 8530]
Length = 453
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/307 (25%), Positives = 136/307 (44%), Gaps = 50/307 (16%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR G Y++ +H++V I P+I+ A+ ++R +++ V P
Sbjct: 127 GYRNKAQVPVRLVRGELQTGFYKKHSHDLVPIEDFLIQDPKIDQAIVVVRDLLRKYQVPP 186
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKV--QITLVWNSRNEKSPN-SDKLESL 215
YDE G +R + + R G+ Q+ LV +R + P+ +D +E +
Sbjct: 187 YDERTNRGVIRNIMV---------------RRGRATHQMMLVLVARTWQVPHLNDIVEEI 231
Query: 216 AEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPS 275
L + SV N NVI G + + + G + + G + ++P
Sbjct: 232 TLALPE----------VTSVVVNLNDQRTNVILGRKSKTIYGRDYLLDKLLGSEFQISPV 281
Query: 276 SFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
SF Q N ++L K + +V D Y+G G I L++ AR + V VE+ +
Sbjct: 282 SFYQVNPIQTEVLYTKAIEAAGLTGKETVIDAYSGIGTISLTM--ARHAKQVYGVEVVES 339
Query: 334 SQLSFEKTVSR---------LPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLD 384
+ + +R + K+ D W +AD + DVL+VDPPRKGLD
Sbjct: 340 AVRDAKANAARNHIKNVTFEVGKAEDVMQKWKDADLPV---------DVLMVDPPRKGLD 390
Query: 385 SSLVHAL 391
+ + A+
Sbjct: 391 KTFIDAV 397
>gi|419707425|ref|ZP_14234909.1| Putative RNA methyltransferase [Streptococcus salivarius PS4]
gi|383282771|gb|EIC80751.1| Putative RNA methyltransferase [Streptococcus salivarius PS4]
Length = 456
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 87/366 (23%), Positives = 162/366 (44%), Gaps = 49/366 (13%)
Query: 65 HEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGLY 120
+ R +VD + +K+ G+ D T Y +R +A++ VR G Y
Sbjct: 90 EQLKFKRKQVVD---NLYKTAGVSDVEVAETLGMETPYAYRNKAQVPVRRVKGQLETGFY 146
Query: 121 QEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNT 180
++ +H+++ I I+ + +R ++ +++PYDE ++TG +R++ + Y+
Sbjct: 147 RKNSHDLIPIEDFLIQDKEIDKLIVFVRDLLRRYDLKPYDEKEQTGLIRHLVVRRGHYSG 206
Query: 181 SLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHY--IHSVWAN 238
Q+ LV+ + K D++ ++ E + + S+ N
Sbjct: 207 -------------QMMLVFVTTRPKVFRIDQI-----------IAKITEAFPSVVSIIQN 242
Query: 239 FQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKY--V 296
N IFG +R L G+ +++ G D ++ SF Q NT + L + + +
Sbjct: 243 INDKNTNAIFGKEFRTLYGQDTITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDFSDL 302
Query: 297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWH 356
+ V D Y+G G IGLS A++ + V VE+ + + +K R +G + H
Sbjct: 303 TSDSIVIDAYSGIGTIGLSF--AKQVKEVYGVEVIETAVEDAKKNAER-----NGITNAH 355
Query: 357 NADNSIE--PLSWL---VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSM 411
+S E W + DV++VDPPRKGL S + A S+ K +S + ++M
Sbjct: 356 YVADSAENAMAKWSKDGIKPDVIIVDPPRKGLTESFIKA--SVAMQPEKITYVSCNPATM 413
Query: 412 VKEEKR 417
++ KR
Sbjct: 414 ARDIKR 419
>gi|228983573|ref|ZP_04143778.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228776169|gb|EEM24530.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 458
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 88/355 (24%), Positives = 152/355 (42%), Gaps = 46/355 (12%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMKTPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+L K +Y +V D Y G G I L L A+K + V VEI E+ +
Sbjct: 293 PEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFL--AQKAKKVYGVEIVPEA-IEDA 349
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
K + L + A+ I W V +D +VVDPPRKG D +L+ +
Sbjct: 350 KRNAALNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLSTI 402
>gi|323341240|ref|ZP_08081486.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus ruminis ATCC
25644]
gi|323091297|gb|EFZ33923.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus ruminis ATCC
25644]
Length = 469
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 141/305 (46%), Gaps = 46/305 (15%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELN-- 155
+ +R +A++ VRGT G ++ G+HN + + + RI+ E+L++ IK LN
Sbjct: 138 FHYRNKAQVPVRGTKGDLKTGFFKRGSHNFLPLENFLIQDERID---EILKEVIKVLNAY 194
Query: 156 -VEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLES 214
+EPYDE+ +G +R++ + + Y+ + +V ++N + P+
Sbjct: 195 ELEPYDEERHSGMIRHLMVRIGHYSR-------------EAMVVIVTKNGRLPHD---RE 238
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
+AE + + SV N NVI G + + L G+ + + G++ ++
Sbjct: 239 IAEKIVAACPD------VVSVMQNVNRDRTNVILGQKTKLLFGKDHIKDTLNGLEFDISA 292
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGASVT--DLYAGAGVIGLSLAAARKCRSVKCVEINK 332
SF Q N + L + K+ T D Y G G I LSLA KCR+V VEI
Sbjct: 293 QSFYQVNPVQTEKLYQTAIKFANLTGEETAIDAYCGIGTISLSLA--EKCRAVYGVEI-V 349
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL-------VGSDVLVVDPPRKGLDS 385
E+ + K + L + + NA++ W+ + +V++VDPPRKGL
Sbjct: 350 EAAIEDAKRNAELNELDNLRFEVGNAED------WMAKWKEKGIRPNVIMVDPPRKGLTE 403
Query: 386 SLVHA 390
SL+ +
Sbjct: 404 SLIES 408
>gi|229551874|ref|ZP_04440599.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
rhamnosus LMS2-1]
gi|229314818|gb|EEN80791.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
rhamnosus LMS2-1]
Length = 459
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/307 (25%), Positives = 136/307 (44%), Gaps = 50/307 (16%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR G Y++ +H++V I P+I+ A+ ++R +++ V P
Sbjct: 133 GYRNKAQVPVRLVRGELQTGFYKKHSHDLVPIEDFLIQDPKIDQAIVVVRDLLRKYQVPP 192
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKV--QITLVWNSRNEKSPN-SDKLESL 215
YDE G +R + + R G+ Q+ LV +R + P+ +D +E +
Sbjct: 193 YDERTNRGVIRNIMV---------------RRGRATHQMMLVLVARTWQVPHLNDIVEEI 237
Query: 216 AEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPS 275
L + SV N NVI G + + + G + + G + ++P
Sbjct: 238 TLALPE----------VTSVVVNLNDQRTNVILGRKSKTIYGRDYLLDKLLGSEFQISPV 287
Query: 276 SFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
SF Q N ++L K + +V D Y+G G I L++ AR + V VE+ +
Sbjct: 288 SFYQVNPIQTEVLYTKAIEAAGLTGKETVIDAYSGIGTISLTM--ARHAKQVYGVEVVES 345
Query: 334 SQLSFEKTVSR---------LPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLD 384
+ + +R + K+ D W +AD + DVL+VDPPRKGLD
Sbjct: 346 AVRDAKANAARNHIKNVTFEVGKAEDVMQKWKDADLPV---------DVLMVDPPRKGLD 396
Query: 385 SSLVHAL 391
+ + A+
Sbjct: 397 KTFIDAV 403
>gi|206967682|ref|ZP_03228638.1| RNA methyltransferase, TrmA family [Bacillus cereus AH1134]
gi|206736602|gb|EDZ53749.1| RNA methyltransferase, TrmA family [Bacillus cereus AH1134]
Length = 454
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 152/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 74 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRN 131
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 132 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEE 191
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 192 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 233
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG++ L G + +G I +++ SF Q N
Sbjct: 234 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIHDFIGDIKFAISARSFYQVN 288
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 289 PEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 348
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 349 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 398
>gi|196040233|ref|ZP_03107535.1| RNA methyltransferase, TrmA family [Bacillus cereus NVH0597-99]
gi|196029088|gb|EDX67693.1| RNA methyltransferase, TrmA family [Bacillus cereus NVH0597-99]
Length = 458
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGILAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ + K
Sbjct: 293 PEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEA-IEDAKR 351
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 352 NAALNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|417972607|ref|ZP_12613501.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus ruminis ATCC
25644]
gi|346331000|gb|EGX99225.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus ruminis ATCC
25644]
Length = 459
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 141/305 (46%), Gaps = 46/305 (15%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELN-- 155
+ +R +A++ VRGT G ++ G+HN + + + RI+ E+L++ IK LN
Sbjct: 128 FHYRNKAQVPVRGTKGDLKTGFFKRGSHNFLPLENFLIQDERID---EILKEVIKVLNAY 184
Query: 156 -VEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLES 214
+EPYDE+ +G +R++ + + Y+ + +V ++N + P+
Sbjct: 185 ELEPYDEERHSGMIRHLMVRIGHYSR-------------EAMVVIVTKNGRLPHD---RE 228
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
+AE + + SV N NVI G + + L G+ + + G++ ++
Sbjct: 229 IAEKIVAACPD------VVSVMQNVNRDRTNVILGQKTKLLFGKDHIKDTLNGLEFDISA 282
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGASVT--DLYAGAGVIGLSLAAARKCRSVKCVEINK 332
SF Q N + L + K+ T D Y G G I LSLA KCR+V VEI
Sbjct: 283 QSFYQVNPVQTEKLYQTAIKFANLTGEETAIDAYCGIGTISLSLA--EKCRAVYGVEI-V 339
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL-------VGSDVLVVDPPRKGLDS 385
E+ + K + L + + NA++ W+ + +V++VDPPRKGL
Sbjct: 340 EAAIEDAKRNAELNELDNLRFEVGNAED------WMAKWKEKGIRPNVIMVDPPRKGLTE 393
Query: 386 SLVHA 390
SL+ +
Sbjct: 394 SLIES 398
>gi|422848369|ref|ZP_16895045.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK115]
gi|325690901|gb|EGD32902.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK115]
Length = 464
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 140/305 (45%), Gaps = 36/305 (11%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + G +++ +H+++ I P I+ + R ++ +++P
Sbjct: 138 GYRNKAQVPVRRVNGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKP 197
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R +L + +G++ + LV P ++E L +
Sbjct: 198 YDEQEKTGLIR-----------NLVVRRGHYSGEIMVILVTT-----RPKIFRVEQLID- 240
Query: 219 LWRNGGSRSREHY--IHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
R E + I ++ N N IFG WR L G+ + + G + ++ +
Sbjct: 241 -------RLTEAFPAIKTIIQNINDQNTNAIFGKEWRVLYGQDYIMDQMLGNNFQISGPA 293
Query: 277 FGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q NT+ + L + + V D Y+G G IGLS+ A+ + V VE+ E+
Sbjct: 294 FYQVNTQMAEKLYQTAIDFADLREDDVVIDAYSGIGTIGLSV--AKHVKEVYGVEVIPEA 351
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ +K + L + + A+N+++ +WL + ++VDPPRKGL S + A
Sbjct: 352 VENSQKNAT-LNGITNAHYVCDTAENAMK--TWLKEGIQPTAILVDPPRKGLTESFIKAS 408
Query: 392 QSIGS 396
G+
Sbjct: 409 AQTGA 413
>gi|227551663|ref|ZP_03981712.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
faecium TX1330]
gi|257887201|ref|ZP_05666854.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,141,733]
gi|257895737|ref|ZP_05675390.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
Com12]
gi|293377654|ref|ZP_06623843.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
PC4.1]
gi|431106120|ref|ZP_19497277.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1613]
gi|431752029|ref|ZP_19540715.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2620]
gi|431756843|ref|ZP_19545475.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E3083]
gi|431762070|ref|ZP_19550632.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E3548]
gi|227179226|gb|EEI60198.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
faecium TX1330]
gi|257823255|gb|EEV50187.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,141,733]
gi|257832302|gb|EEV58723.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
Com12]
gi|292643654|gb|EFF61775.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
PC4.1]
gi|430569652|gb|ELB08642.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1613]
gi|430614638|gb|ELB51618.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2620]
gi|430620697|gb|ELB57499.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E3083]
gi|430624762|gb|ELB61412.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E3548]
Length = 457
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 136/311 (43%), Gaps = 58/311 (18%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+G+R +A++ VR G Y++ +H++V I P I+ A++++R ++ V
Sbjct: 129 FGYRNKAQIPVRRIDGQLATGFYKKNSHDLVPIEDFYIQDPVIDQAIKVVRDILQRFQVR 188
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLA 216
Y+E+ G LR++ + Y+ + +V +R EK S ++ E++
Sbjct: 189 GYNEEKNEGQLRHIIIRRGHYSHEM-------------MVVLVTRKEKFFKSKEIAEAIH 235
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
E L + SV N NVI G++ + L G + + G ++ S
Sbjct: 236 EELPE----------VVSVIQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKS 285
Query: 277 FGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q NT+ + L + K+ V D Y+G G IGLSL A K V +E+
Sbjct: 286 FYQVNTQQAEYLYQTAIKFAELDKKDIVIDAYSGIGTIGLSL--ADKVDKVYGMEV---- 339
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPP 379
+P++++ + ++ +N IE + + VG V+VVDPP
Sbjct: 340 ----------IPEAIE-DAQFNALNNKIENVYYEVGKAEKVMKKWQEKGIKPSVIVVDPP 388
Query: 380 RKGLDSSLVHA 390
RKGLD + +
Sbjct: 389 RKGLDHHFIES 399
>gi|403070842|ref|ZP_10912174.1| RNA methyltransferase [Oceanobacillus sp. Ndiop]
Length = 456
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 151/347 (43%), Gaps = 43/347 (12%)
Query: 60 CSGCTHE---FNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRCRAKLAVRGT 111
C GC + + L + ++ + K I LD + +R + ++ V
Sbjct: 82 CGGCQLQHMSYKLQLEMKQNQVKNVMKKIAHLDHVPVHPIIGMDNPFHYRNKVQIPVGEK 141
Query: 112 STSPLIGLYQEGTHNVVD-IPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRY 170
+ + G YQ+ +H +++ C IN V+ R+ + ++ Y+E++ +G+LR+
Sbjct: 142 NGELIAGFYQKRSHRILENTETCSIQDETINEMVKATREIANRIGIKAYNEENHSGELRH 201
Query: 171 VQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRNGGSRSRE 229
+ M T + T+ + +V +R+ K P + + + L E R
Sbjct: 202 I-MVRTGFATN------------EAMVVLVTRSNKLPGKELIIQELTE----------RF 238
Query: 230 HYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILL 289
I S+ N T +VI G + + L GE ++ +G I +++ SF Q N L
Sbjct: 239 PQIKSIVQNINTQRTSVILGEKTKVLWGEEYIYDKIGDITFAISAKSFFQVNPVQTKALY 298
Query: 290 RKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPK 347
K +Y G +V D Y G G I L LA +K + V +E+ E+ ++ K ++L
Sbjct: 299 DKALEYAKIGKDDTVIDAYCGIGTISLFLA--QKAKKVYGIEVVPEA-INDAKNNAKLNG 355
Query: 348 SVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ S A+ + W + DV+VVDPPRKG D + A+
Sbjct: 356 ITNAEFSVGEAEKVMP--DWKEKGINPDVIVVDPPRKGCDVDFLQAM 400
>gi|424762802|ref|ZP_18190286.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX1337RF]
gi|402423907|gb|EJV56106.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX1337RF]
Length = 458
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 136/311 (43%), Gaps = 58/311 (18%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+G+R +A++ VR G Y++ +H++V I P I+ A++++R ++ V
Sbjct: 129 FGYRNKAQIPVRRIDGQLATGFYKKNSHDLVPIEDFYIQDPVIDQAIKVVRDILQRFQVR 188
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLA 216
Y+E+ G LR++ + Y+ + +V +R EK S ++ E++
Sbjct: 189 GYNEEKNEGQLRHIIIRRGHYSHEM-------------MVVLVTRKEKFFKSKEIAEAIH 235
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
E L + SV N NVI G++ + L G + + G ++ S
Sbjct: 236 EELPE----------VVSVIQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKS 285
Query: 277 FGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q NT+ + L + K+ V D Y+G G IGLSL A K V +E+
Sbjct: 286 FYQVNTQQAEYLYQTAIKFAELDKKDIVIDAYSGIGTIGLSL--ADKVDKVYGMEV---- 339
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPP 379
+P++++ + ++ +N IE + + VG V+VVDPP
Sbjct: 340 ----------IPEAIE-DAQFNALNNKIENVYYEVGKAEKVMKKWQEKGIKPSVIVVDPP 388
Query: 380 RKGLDSSLVHA 390
RKGLD + +
Sbjct: 389 RKGLDHHFIES 399
>gi|339640888|ref|ZP_08662332.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. oral
taxon 056 str. F0418]
gi|339454157|gb|EGP66772.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. oral
taxon 056 str. F0418]
Length = 452
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/308 (25%), Positives = 143/308 (46%), Gaps = 40/308 (12%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + G +++ +H+++ I P I+ + R ++ +++P
Sbjct: 125 GYRNKAQVPVRRVNGQLETGFFRKNSHDLLPIEDFYIQAPVIDQVILFTRDLLRRFDLKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE +++G +R +L + +G++ + LV P +++ L E
Sbjct: 185 YDEKEQSGLIR-----------NLVVRRGHYSGQIMVILVTTR-----PKVFRVDQLIEQ 228
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
L + I SV N N IFG W+ L G+ + + G D ++ +F
Sbjct: 229 LIKQFPE------IVSVMQNINDQNTNAIFGKEWKTLYGQDYITDQMLGNDFQISGPAFY 282
Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q N + L + + A+ V D Y+G G IGLS+ A++ + V VE+ E+
Sbjct: 283 QVNAEMAEKLYQTAIDFSELTANDVVLDAYSGIGTIGLSV--AKQVKQVYGVEVIPEAVE 340
Query: 337 SFEKTVSRLPKSVDG--NISW--HNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVH 389
+ SR ++G N S+ A+N+++ +WL + +++VDPPRKGL S +
Sbjct: 341 N-----SRKNAEINGITNASYVCDTAENAMK--NWLKDGIQPSLILVDPPRKGLTDSFIK 393
Query: 390 ALQSIGSA 397
A G+
Sbjct: 394 ASSQTGAG 401
>gi|229154085|ref|ZP_04282210.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 4342]
gi|228629365|gb|EEK86067.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 4342]
Length = 465
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 152/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 85 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMKTPWVYRN 142
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 143 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEE 202
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 203 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 244
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 245 -----AKFPEVKSIVQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 299
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ + K
Sbjct: 300 PEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEA-IEDAKR 358
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L+ +
Sbjct: 359 NAALNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLSTI 409
>gi|259502578|ref|ZP_05745480.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus antri
DSM 16041]
gi|259169468|gb|EEW53963.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus antri
DSM 16041]
Length = 479
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 88/345 (25%), Positives = 154/345 (44%), Gaps = 60/345 (17%)
Query: 91 TFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQG 150
T R Y +R +A++ V+ G Y+ G+H +V I P+I+ A+ ++R
Sbjct: 142 TMGMERPYHYRNKAQVPVKLVHGKLETGFYKRGSHTLVPIEDFYIQDPKIDEAIVVVRDL 201
Query: 151 IKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSD 210
+++ +V PYDE G +R V + Y + +V + LV N++ + P +
Sbjct: 202 LRKYHVTPYDERTGKGVIRTVMV-----------RRGYYSHEVMVVLVTNTK--RLPMKE 248
Query: 211 KLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDI 270
++ G + + S+ N N + G+ + L G+ + + + GID
Sbjct: 249 QIVD---------GIVAGVPEVKSIVQNINDKRTNKLLGDTDKTLWGKDEIHDQLLGIDF 299
Query: 271 SLAPSSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCV 328
+++P SF Q N + + L + S V D Y G G I SLA AR + V V
Sbjct: 300 AISPLSFYQVNPQQTERLYQTAIDSAGLDGSQTVIDAYCGIGTI--SLAVARHAKQVYGV 357
Query: 329 EINKESQLSFEKTVSRLPKSVDGNISWHNAD-NSIEPLSWLVGS---------------D 372
EI +P +++ + HNA N I+ ++VG D
Sbjct: 358 EI--------------VPAAIED--AKHNAKRNGIKNAKFVVGKAEDQFAKWQAAGLKPD 401
Query: 373 VLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKR 417
V++VDPPRKGL SL+ A + A +K +S + +++V++ +R
Sbjct: 402 VVIVDPPRKGLAESLIEATGEM--APQKVIYVSCNPATLVRDIQR 444
>gi|419516700|ref|ZP_14056318.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA02506]
gi|379640703|gb|EIA05242.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA02506]
Length = 452
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 75/302 (24%), Positives = 140/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVVLVTTR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + + D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKKDDVIIDAYSGIGTIGLSV--AKHVKEVYGVELIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K ++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 342 SKKN-AQLNNISNAHYVCDTAENAMK--NWLKDGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|365904937|ref|ZP_09442696.1| tRNA (uracil-5-)-methyltransferase-like protein [Lactobacillus
versmoldensis KCTC 3814]
Length = 451
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 136/307 (44%), Gaps = 47/307 (15%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR G Y+ +H ++ + P+I+A + +R +++ V +
Sbjct: 128 YRNKAQVPVREVDGKLTTGFYRRHSHELIPMEDFLIQDPKIDAEILRVRDILRKYKVRGF 187
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE++ G +R ++ Y G++ I LV R+ E +A
Sbjct: 188 DEENHKGQIR-----------TIMVRRAYYTGQMMIVLVSRVRDISHYKDIANEIMA--- 233
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
S E + S++ N NVIFG + L G + + G ++P SF Q
Sbjct: 234 -------SDE--VKSLYLNINEKKTNVIFGKEMQLLAGSPYIDDEILGNTYRISPRSFYQ 284
Query: 280 AN----TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
N + + + + K Q + SV D Y+G G IGLS+A K + V +E+
Sbjct: 285 VNPTQTQKLYQLAIDKAQ--LTGNESVVDAYSGIGTIGLSMA--NKAKKVTGIEV----- 335
Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL--------VGSDVLVVDPPRKGLDSSL 387
E V ++ D N + NAD + + VG DVL+VDPPRKGL +SL
Sbjct: 336 --VEDAVKDAQQNADIN-NIKNADFVVGKTEDVLNEWSKNNVGVDVLMVDPPRKGLAASL 392
Query: 388 VHALQSI 394
+ ++++I
Sbjct: 393 IDSIKNI 399
>gi|444403315|ref|ZP_21200419.1| 23S rRNA (uracil-5-)-methyltransferase RumA, partial [Streptococcus
pneumoniae PNI0008]
gi|444264699|gb|ELU70756.1| 23S rRNA (uracil-5-)-methyltransferase RumA, partial [Streptococcus
pneumoniae PNI0008]
Length = 460
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 140/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVVLVTTR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGLSV--AKHVKEVYGVELIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K ++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 342 SKKN-AQLNNISNAHYVCDTAENAMK--NWLKDGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|417004784|ref|ZP_11943423.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
agalactiae FSL S3-026]
gi|341577766|gb|EGS28173.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
agalactiae FSL S3-026]
Length = 551
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 153/330 (46%), Gaps = 48/330 (14%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A++ VR G +++ +H +V I I+A + R +++ +V+P
Sbjct: 125 AYRNKAQVPVRRVDGQLETGFFRKNSHTLVSIEDYLIQEKEIDALINFTRDLLRKFDVKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE+ ++G +R +L + G++ + LV P +++ + E
Sbjct: 185 YDEEQQSGLIR-----------NLVVRRGHYTGQLMLVLVTTR-----PKIFRIDQMIEK 228
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
L S + S+ N +NVIFG +R L G + + G +++ SF
Sbjct: 229 LVSAFPS------VVSIMQNINDRNSNVIFGKEFRTLYGSDTIEDQMLGNTYAISAQSFY 282
Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q NT + L +K + + V D Y+G G IGLS+ A++ + V VE+
Sbjct: 283 QVNTEMAEKLYQKAIDFSDLNSEDIVIDAYSGIGTIGLSV--AKQVKHVYGVEV------ 334
Query: 337 SFEKTVSRLPKSVDGN---ISWHNADNSIEPLS-WL---VGSDVLVVDPPRKGLDSSLVH 389
EK VS ++ N S + AD++ ++ WL + V++VDPPRKGL S V+
Sbjct: 335 -VEKAVSDAKENATRNGITNSTYVADSAENAMAKWLKEGIKPTVIMVDPPRKGLTESFVY 393
Query: 390 ALQSIGSAERKAKSLSE---SSSSMVKEEK 416
+ +A+ KA ++ +S++M ++ K
Sbjct: 394 S-----AAQTKADKITYISCNSATMARDIK 418
>gi|22536806|ref|NP_687657.1| RNA methyltransferase [Streptococcus agalactiae 2603V/R]
gi|25010677|ref|NP_735072.1| hypothetical protein gbs0613 [Streptococcus agalactiae NEM316]
gi|76788448|ref|YP_329346.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
agalactiae A909]
gi|76799166|ref|ZP_00781348.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
agalactiae 18RS21]
gi|77407748|ref|ZP_00784502.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae COH1]
gi|406709096|ref|YP_006763822.1| RNA methyltransferase [Streptococcus agalactiae GD201008-001]
gi|424049832|ref|ZP_17787383.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
agalactiae ZQ0910]
gi|50401576|sp|Q8E0T7.1|Y633_STRA5 RecName: Full=Uncharacterized RNA methyltransferase SAG0633
gi|50401578|sp|Q8E6F5.1|Y613_STRA3 RecName: Full=Uncharacterized RNA methyltransferase gbs0613
gi|22533652|gb|AAM99529.1|AE014220_1 RNA methyltransferase, TrmA family [Streptococcus agalactiae
2603V/R]
gi|23095031|emb|CAD46257.1| Unknown [Streptococcus agalactiae NEM316]
gi|76563505|gb|ABA46089.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
agalactiae A909]
gi|76585475|gb|EAO62051.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
agalactiae 18RS21]
gi|77173614|gb|EAO76729.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae COH1]
gi|389648675|gb|EIM70169.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
agalactiae ZQ0910]
gi|406649981|gb|AFS45382.1| RNA methyltransferase [Streptococcus agalactiae GD201008-001]
Length = 451
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 153/330 (46%), Gaps = 48/330 (14%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A++ VR G +++ +H +V I I+A + R +++ +V+P
Sbjct: 125 AYRNKAQVPVRRVDGQLETGFFRKNSHTLVSIEDYLIQEKEIDALINFTRDLLRKFDVKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE+ ++G +R +L + G++ + LV P +++ + E
Sbjct: 185 YDEEQQSGLIR-----------NLVVRRGHYTGQLMLVLVTTR-----PKIFRIDQMIEK 228
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
L S + S+ N +NVIFG +R L G + + G +++ SF
Sbjct: 229 LVSAFPS------VVSIMQNINDRNSNVIFGKEFRTLYGSDTIEDQMLGNTYAISAQSFY 282
Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q NT + L +K + + V D Y+G G IGLS+ A++ + V VE+
Sbjct: 283 QVNTEMAEKLYQKAIDFSDLNSEDIVIDAYSGIGTIGLSV--AKQVKHVYGVEV------ 334
Query: 337 SFEKTVSRLPKSVDGN---ISWHNADNSIEPLS-WL---VGSDVLVVDPPRKGLDSSLVH 389
EK VS ++ N S + AD++ ++ WL + V++VDPPRKGL S V+
Sbjct: 335 -VEKAVSDAKENATRNGITNSTYVADSAENAMAKWLKEGIKPTVIMVDPPRKGLTESFVY 393
Query: 390 ALQSIGSAERKAKSLSE---SSSSMVKEEK 416
+ +A+ KA ++ +S++M ++ K
Sbjct: 394 S-----AAQTKADKITYISCNSATMARDIK 418
>gi|421146271|ref|ZP_15605988.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
agalactiae GB00112]
gi|401687055|gb|EJS83018.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
agalactiae GB00112]
Length = 453
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 153/330 (46%), Gaps = 48/330 (14%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A++ VR G +++ +H +V I I+A + R +++ +V+P
Sbjct: 125 AYRNKAQVPVRRVDGQLETGFFRKNSHTLVSIEDYLIQEKEIDALINFTRDLLRKFDVKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE+ ++G +R +L + G++ + LV P +++ + E
Sbjct: 185 YDEEQQSGLIR-----------NLVVRRGHYTGQLMLVLVTTR-----PKIFRIDQMIEK 228
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
L S + S+ N +NVIFG +R L G + + G +++ SF
Sbjct: 229 LVSAFPS------VVSIMQNINDRNSNVIFGKEFRTLYGSDTIEDQMLGNTYAISAQSFY 282
Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q NT + L +K + + V D Y+G G IGLS+ A++ + V VE+
Sbjct: 283 QVNTEMAEKLYQKAIDFSDLNSEDIVIDAYSGIGTIGLSV--AKQVKHVYGVEV------ 334
Query: 337 SFEKTVSRLPKSVDGN---ISWHNADNSIEPLS-WL---VGSDVLVVDPPRKGLDSSLVH 389
EK VS ++ N S + AD++ ++ WL + V++VDPPRKGL S V+
Sbjct: 335 -VEKAVSDAKENATRNGITNSTYVADSAENAMAKWLKEGIKPTVIMVDPPRKGLTESFVY 393
Query: 390 ALQSIGSAERKAKSLSE---SSSSMVKEEK 416
+ +A+ KA ++ +S++M ++ K
Sbjct: 394 S-----AAQTKADKITYISCNSATMARDIK 418
>gi|257087679|ref|ZP_05582040.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis D6]
gi|422724515|ref|ZP_16780991.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX2137]
gi|424672107|ref|ZP_18109088.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
599]
gi|256995709|gb|EEU83011.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis D6]
gi|315025522|gb|EFT37454.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX2137]
gi|402357152|gb|EJU91866.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
599]
Length = 456
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 86/361 (23%), Positives = 145/361 (40%), Gaps = 58/361 (16%)
Query: 54 CPHFQSCSGCTHEFNLHRPII------VDEATDFFKSIGLLDF----TFDSCRLYGWRCR 103
CP +++C GC + ++ + + +A + FK ++ T + +R +
Sbjct: 76 CPVYETCGGCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMENPWNYRNK 135
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A+ +R GLYQ +H +V I +C P + L + + + YDE
Sbjct: 136 AQFQLRQIDGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERK 195
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-----ESLAEF 218
+G R + + V + G+VQ+ + S K P +K+ E L E
Sbjct: 196 NSGIFRTLMVRVGI-----------QTGEVQVVFITQSL--KFPQKEKMVRAINEQLPEV 242
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ S+ N Q +++ G+ HL G+ E++ + L+P +F
Sbjct: 243 V--------------SIMQNVQNKKTSLVMGDDTLHLWGKESIEEHINDVVFDLSPRAFF 288
Query: 279 QANTRAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAA-ARKCRSVKCVEINKESQ 335
Q N ++L + K + +V D Y G G IGLSLA A + R + + +
Sbjct: 289 QLNPEQTEVLYNEGIKALDLQPNETVVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDD- 347
Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWL---VGSDVLVVDPPRKGLDSSLVHA 390
+R G + H A + E L W D +VVDPPR GLD L+ A
Sbjct: 348 -------ARFNAKRLGVTNTHYAVGTAEDLLPKWFKEGFKPDAIVVDPPRTGLDRKLLTA 400
Query: 391 L 391
L
Sbjct: 401 L 401
>gi|444419486|ref|ZP_21215345.1| 23S rRNA (uracil-5-)-methyltransferase RumA, partial [Streptococcus
pneumoniae PNI0427]
gi|444286715|gb|ELU91678.1| 23S rRNA (uracil-5-)-methyltransferase RumA, partial [Streptococcus
pneumoniae PNI0427]
Length = 454
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 140/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVVLVTTR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGLSV--AKHVKEVYGVELIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K ++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 342 SKKN-AQLNNISNAHYVCDTAENAMK--NWLKDGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|260654818|ref|ZP_05860306.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Jonquetella anthropi
E3_33 E1]
gi|260630533|gb|EEX48727.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Jonquetella anthropi
E3_33 E1]
Length = 454
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 101/406 (24%), Positives = 168/406 (41%), Gaps = 52/406 (12%)
Query: 54 CPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDF-----TFDSCRLYGWRCR 103
C +++C GC + L ++ E D + +G D S +G+R +
Sbjct: 66 CRWYETCGGCQLQHASRSLQLELKSLIVE--DSLRRLGGFDLPEKISCLPSPVQWGYRNK 123
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A VR T++ G ++ GTH++V I C + LR +++ YDE
Sbjct: 124 ASFPVRRTASGETTGFFKMGTHDIVPIETCPLVCDQAAQLYGTLRGLVQDGGFSAYDEKT 183
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNG 223
G LR++ + +TY + L A LV S+ P+ + + SL + LWR
Sbjct: 184 GRGWLRHIVVRASTYGSGLLA-----------LLVVTSK----PDQEGMASLRD-LWRY- 226
Query: 224 GSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTR 283
+SR+ + + + S N I G+ + G E +G + +SF Q NT
Sbjct: 227 -LQSRQPALSGLALSINPSRGNRIIGDETVPVAGTDRVHECLGPFRLEYDGTSFFQVNTA 285
Query: 284 AFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
L VP G+ +LY G G L+ ARK R+V EI + V
Sbjct: 286 QAARLFDYASSLVPDGSRTLELYCGVG--SLTAFLARKSRAVTAAEI-------WPPAVE 336
Query: 344 RLPKSVDGNISWHNADNSIEPLSWL-----VGSDVLVVDPPRKGLDSSLVHALQSIGSAE 398
K++ GN + N + + P L G D LVVDPPR G D ++ L G++
Sbjct: 337 MARKNMSGN-NLTNVELRLSPAEKLPSDLFEGQDCLVVDPPRTGCDGEMLARLA--GTSI 393
Query: 399 RKAKSLSESSSSMVKEEKRPWILRAKEASVQIGSKTNSENQSLPQT 444
+ +S + +++ ++ R + A Q+ + + PQT
Sbjct: 394 KSIVYVSCNPATLARDAA-----RLQSAGYQLVTSSVRAFDMFPQT 434
>gi|77411137|ref|ZP_00787490.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae
CJB111]
gi|77162860|gb|EAO73818.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae
CJB111]
Length = 451
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 153/330 (46%), Gaps = 48/330 (14%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A++ VR G +++ +H +V I I+A + R +++ +V+P
Sbjct: 125 AYRNKAQVPVRRVDGQLETGFFRKNSHTLVSIEDYLIQEKEIDALINFTRDLLRKFDVKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE+ ++G +R +L + G++ + LV P +++ + E
Sbjct: 185 YDEEQQSGLIR-----------NLVVRRGHYTGQLMLVLVTTR-----PKIFRIDQMIEK 228
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
L S + S+ N +NVIFG +R L G + + G +++ SF
Sbjct: 229 LVSAFPS------VVSIMQNINDRNSNVIFGKEFRTLYGSDTIEDQMLGNTYAISAQSFY 282
Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q NT + L +K + + V D Y+G G IGLS+ A++ + V VE+
Sbjct: 283 QVNTEMAEKLYQKAIDFSDLNSEDIVIDAYSGIGTIGLSV--AKQVKHVYGVEV------ 334
Query: 337 SFEKTVSRLPKSVDGN---ISWHNADNSIEPLS-WL---VGSDVLVVDPPRKGLDSSLVH 389
EK VS ++ N S + AD++ ++ WL + V++VDPPRKGL S V+
Sbjct: 335 -VEKAVSDAKENATRNGITNSTYVADSAENAMAKWLKEGIKPTVIMVDPPRKGLTESFVY 393
Query: 390 ALQSIGSAERKAKSLSE---SSSSMVKEEK 416
+ +A+ KA ++ +S++M ++ K
Sbjct: 394 S-----AAQTKADKITYISCNSATMARDIK 418
>gi|199597359|ref|ZP_03210790.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
rhamnosus HN001]
gi|199591875|gb|EDY99950.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
rhamnosus HN001]
Length = 458
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 77/307 (25%), Positives = 136/307 (44%), Gaps = 50/307 (16%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR G Y++ +H++V I P+I+ A+ ++R +++ V P
Sbjct: 130 GYRNKAQVPVRLVHGELQTGFYKKHSHDLVPIEDFLIQDPKIDQAIVVVRDLLRKYQVPP 189
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKV--QITLVWNSRNEKSPN-SDKLESL 215
YDE G +R + + R G+ Q+ +V +R + P+ +D +E +
Sbjct: 190 YDERTNRGVIRNIMV---------------RRGRATQQMMIVLVARTWQVPHLNDIVEGI 234
Query: 216 AEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPS 275
L + SV N NVI G + + + G + + G + ++P
Sbjct: 235 TLALPE----------VTSVVVNLNDKRTNVILGRKSKTIYGRDYLLDKLLGSEFQISPV 284
Query: 276 SFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
SF Q N ++L K + +V D Y+G G I L++ AR + V VE+ +
Sbjct: 285 SFYQVNPIQTEVLYTKAIEAAALTGKETVIDAYSGIGTISLTM--ARHAKQVYGVEVVES 342
Query: 334 SQLSFEKTVSR---------LPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLD 384
+ + +R + K+ D W +AD + DVL+VDPPRKGLD
Sbjct: 343 AVRDAKANAARNHIKNVTFEVGKAEDVMQKWKDADLPV---------DVLMVDPPRKGLD 393
Query: 385 SSLVHAL 391
+ + A+
Sbjct: 394 KTFIDAV 400
>gi|435854944|ref|YP_007316263.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Halobacteroides
halobius DSM 5150]
gi|433671355|gb|AGB42170.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Halobacteroides
halobius DSM 5150]
Length = 453
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 83/360 (23%), Positives = 147/360 (40%), Gaps = 51/360 (14%)
Query: 53 QCPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRL----YGWR 101
+CP + C GC T + N + ++ D K L D + + Y +R
Sbjct: 74 ECPKYDLCGGCQMQHIDYTAQLNYKQQMVEDAIERIAK---LDDIKINQVKGMENPYLYR 130
Query: 102 CRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDE 161
+A+ + + G Y G+H ++ + C+ HP IN V+ + I++ N+ Y+E
Sbjct: 131 NKAQFPLGVEDEEVITGFYAAGSHKLIKVKDCQIQHPVINRIVDRAVKLIEDYNLSIYNE 190
Query: 162 DDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDK-----LESLA 216
+ G LR++ + V Q LV +++EK + LE +
Sbjct: 191 EIHQGLLRHLVVRVGVCTN-------------QAMLVLVTKDEKFVKGQEIAHKLLEEVP 237
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
E + SV+ N NV+ G++ L G+ + +G I ++P S
Sbjct: 238 ELI--------------SVYQNVNPEQTNVVLGDKTALLAGQEYILDYIGPIKYQISPLS 283
Query: 277 FGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q N+ +L ++ +Y V D Y G G I L L A + + V +E+ E+
Sbjct: 284 FFQVNSLQTKVLYDQVLEYAKLTGEEKVLDAYCGLGSISLYL--ANQAQEVYGIEVVPEA 341
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSI 394
+ K ++L + + + + L +V+VVDPPRKG ++ A I
Sbjct: 342 -IEQAKENAKLNDINNCQFAVGKVKDVLPQLKNQFSPEVIVVDPPRKGCHEEVLEAFAKI 400
>gi|421861714|ref|ZP_16293662.1| methyltransferase [Paenibacillus popilliae ATCC 14706]
gi|410828753|dbj|GAC44099.1| methyltransferase [Paenibacillus popilliae ATCC 14706]
Length = 460
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 94/357 (26%), Positives = 157/357 (43%), Gaps = 56/357 (15%)
Query: 98 YGWRCRAKLAV-RGT--STSPLIGLY-QEGTHNVVDIPHCKAHHPRINAAVELLRQGIKE 153
Y WR R K + GT T LIG Y + +H ++D H R + A+ +++ ++
Sbjct: 127 YPWRYRNKSQMPIGTDPQTGELIGGYFAKASHRIIDTDVSLLQHKRNDKAMRAVKRIARK 186
Query: 154 LNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSR---NEKSPNSD 210
+ PY+E+ TG LR+V M V +R + ITLV N +E ++
Sbjct: 187 YGIAPYNEETHTGLLRHVIMRVG-----------FRTDEQMITLVTNGEGLPHEAEIVAE 235
Query: 211 KLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDI 270
+E+L + S+ N T NVI G++ R L G +++G I
Sbjct: 236 LVEALPQLT--------------SICLNMNTKRTNVIMGDKTRILWGSEYITDDIGDIAF 281
Query: 271 SLAPSSFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCV 328
++ SF Q N ++L K +Y +V D Y G G I L L AR+ + V V
Sbjct: 282 KISARSFYQVNPVQTEVLYEKAVEYAGLSGQETVIDAYCGIGTISLFL--ARRAKRVLGV 339
Query: 329 EINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDS 385
EI +E+ + + L + + A++ I W + DV+VVDPPRKG D
Sbjct: 340 EIVEEAIADAHRN-AELNGITNAEFAVGAAEDVIP--QWKERGLAPDVIVVDPPRKGCDP 396
Query: 386 SLVHALQSI------------GSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQI 430
+L+ + ++ + R + L++ +MV E +P + + A V++
Sbjct: 397 ALLDTMLAMRPERIVYVSCNPSTLARDMRVLADGGYTMV--EVQPVDMFPQTAHVEV 451
>gi|225856683|ref|YP_002738194.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae P1031]
gi|225725093|gb|ACO20945.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae P1031]
Length = 543
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 139/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFFIQDPVIDQVVVALRGLLRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVVLVTTR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGLSV--AKHVKEVYGVELIPEA-VE 340
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
K ++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 341 NSKKNAQLNNISNAHYVCDTAENAMK--NWLKDGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|222151872|ref|YP_002561032.1| RNA methyltransferase, TrmA family protein [Macrococcus
caseolyticus JCSC5402]
gi|222121001|dbj|BAH18336.1| RNA methyltransferase, TrmA family protein homolog [Macrococcus
caseolyticus JCSC5402]
Length = 454
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 138/300 (46%), Gaps = 34/300 (11%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
Y +R +A++ VR + + G +++ +H +V + + H I+ A+ +R +++ ++
Sbjct: 128 YEYRNKAQIPVRSVNGNVETGFFRKNSHQLVPVENFYIQHKVIDEAIVKVRDILRKYDIV 187
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSR---NEKSPNSDKLES 214
PY+E + G++R++ + Y G++ I LV N + N +S D + +
Sbjct: 188 PYNERNHNGEIRHIVVKRGHYT-----------GQLMIILVTNKKRLANIESITHDIVNT 236
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
+ + SV NF NVI G L G + + + G++ ++P
Sbjct: 237 IDN--------------VESVVLNFNNQEGNVILGRNNTVLHGTPYYTDKILGLEFRVSP 282
Query: 275 SSFGQANTRAFDILLR-KLQKYVPYG-ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
+SF Q NT + L + L+ G +V D Y G G I SLA A+ V +EI
Sbjct: 283 NSFFQVNTPQAETLYKLALEAANLKGHETVLDAYCGIGTI--SLALAQHAEQVYAMEIVH 340
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL-VGSDVLVVDPPRKGLDSSLVHAL 391
ES + K +++ + + +AD + S V DV VVDPPRKGLD + L
Sbjct: 341 ES-IKMAKQNAKMNGIDNVHFETGSADEILPKWSEQGVNFDVAVVDPPRKGLDDDFIQTL 399
>gi|423404971|ref|ZP_17382144.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG2X1-2]
gi|423479808|ref|ZP_17456522.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG6X1-1]
gi|401645939|gb|EJS63575.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG2X1-2]
gi|402424784|gb|EJV56951.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG6X1-1]
Length = 458
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 85/352 (24%), Positives = 153/352 (43%), Gaps = 40/352 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG+ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNTKRTNVIFGDITTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 293 PEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 352
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I P + G +D +VVDPPRKG D +L++ +
Sbjct: 353 AA-LNNMTNAEFGVGEAEVVI-PKWYKEGIIADTMVVDPPRKGCDDALLNTI 402
>gi|168185623|ref|ZP_02620258.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
C str. Eklund]
gi|169296454|gb|EDS78587.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
C str. Eklund]
Length = 472
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 77/315 (24%), Positives = 141/315 (44%), Gaps = 58/315 (18%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
Y +R + +L V + +G Y +H+++D+ C + V L+++ +K+ N++
Sbjct: 145 YRYRNKVQLPVGEENGEIKVGFYAPRSHDIIDMEICHIQDEVGDTVVSLIKEWMKKYNIK 204
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
PY+E TG +R++ M +NT+ ++ +V +R + P ++L L
Sbjct: 205 PYNEQKNTGLVRHI-MVRRGFNTN------------EVMIVIVTRTNELPYKEELIEL-- 249
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
L + G I S+ N + NVI G + +L G+ + +G +++P SF
Sbjct: 250 ILKKIDG-------ITSIVQNINSKRTNVILGLKNINLYGKDYISDYIGEFKFNISPLSF 302
Query: 278 GQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAA-ARKCRSVKCVEINKES 334
Q N ++L K +Y + V D Y G G I L L+ A+K V+ V+ E
Sbjct: 303 FQVNPVQTEVLYNKALEYAALTGNEVVFDAYCGTGTISLFLSKNAKKVYGVEIVDAAIE- 361
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVG---------------SDVLVVDPP 379
N + +N+++ ++VG +DV+VVDPP
Sbjct: 362 -----------------NAKINAEENNVDNAEFIVGKSEEVIPNLIKQGIKADVVVVDPP 404
Query: 380 RKGLDSSLVHALQSI 394
RKG D +L+ A+ ++
Sbjct: 405 RKGCDKALLDAIGNM 419
>gi|421452041|ref|ZP_15901402.1| 23S rRNA m(5)U methyltransferase [Streptococcus salivarius K12]
gi|400182472|gb|EJO16734.1| 23S rRNA m(5)U methyltransferase [Streptococcus salivarius K12]
Length = 452
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 86/366 (23%), Positives = 160/366 (43%), Gaps = 49/366 (13%)
Query: 65 HEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGLY 120
+ R +VD + +K+ G+ D T Y +R +A++ VR G Y
Sbjct: 90 EQLKFKRKQVVD---NLYKTAGISDVEVAETLGMETPYAYRNKAQVPVRRVKGQLETGFY 146
Query: 121 QEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNT 180
++ +H+++ I I+ + +R ++ +++PYDE ++TG +R++ + Y+
Sbjct: 147 RKNSHDLIPIEDFLIQDKEIDKLIVFVRDLLRRYDLKPYDEKEQTGLIRHLVVRRGHYSG 206
Query: 181 SLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHY--IHSVWAN 238
Q+ LV+ + K D++ ++ E + + S+ N
Sbjct: 207 -------------QMMLVFVTTRPKVFRIDQI-----------IAKITEAFPSVVSIIQN 242
Query: 239 FQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPY 298
N IFG +R L G+ + + G D ++ SF Q NT + L + +
Sbjct: 243 INDKNTNAIFGKEFRTLYGQDTITDRMLGNDYEISAQSFYQVNTEMAEKLYQTAIDFSDL 302
Query: 299 GAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWH 356
+ V D Y+G G IGLS A++ + V VE+ + + +K R +G + H
Sbjct: 303 NSDSIVIDAYSGIGTIGLSF--AKQVKEVYGVEVIETAVEDAKKNAER-----NGITNAH 355
Query: 357 NADNSIEPL--SWL---VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSM 411
+S E W + D+++VDPPRKGL S + A S+ K +S + ++M
Sbjct: 356 YVADSAENTMAKWSKDGIKPDIIIVDPPRKGLTESFIKA--SVAMQPEKITYVSCNPATM 413
Query: 412 VKEEKR 417
++ KR
Sbjct: 414 ARDIKR 419
>gi|77406146|ref|ZP_00783219.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae H36B]
gi|77175269|gb|EAO78065.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae H36B]
Length = 453
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 153/330 (46%), Gaps = 48/330 (14%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A++ VR G +++ +H +V I I+A + R +++ +V+P
Sbjct: 125 AYRNKAQVPVRRVDGQLETGFFRKNSHTLVSIEDYLIQEKEIDALINFTRDLLRKFDVKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE+ ++G +R +L + G++ + LV P +++ + E
Sbjct: 185 YDEEQQSGLIR-----------NLVVRRGHYTGQLMLVLVTTR-----PKIFRIDQMIEK 228
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
L S + S+ N +NVIFG +R L G + + G +++ SF
Sbjct: 229 LVSAFPS------VVSIMQNINDRNSNVIFGKEFRTLYGSDTIEDQMLGNTYAISAQSFY 282
Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q NT + L +K + + V D Y+G G IGLS+ A++ + V VE+
Sbjct: 283 QVNTEMAEKLYQKAIDFSDLNSEDIVIDAYSGIGTIGLSV--AKQVKHVYGVEV------ 334
Query: 337 SFEKTVSRLPKSVDGN---ISWHNADNSIEPLS-WL---VGSDVLVVDPPRKGLDSSLVH 389
EK VS ++ N S + AD++ ++ WL + V++VDPPRKGL S V+
Sbjct: 335 -VEKAVSDAKENATRNGITNSTYVADSAENAMAKWLKEGIKPTVIMVDPPRKGLTESFVY 393
Query: 390 ALQSIGSAERKAKSLSE---SSSSMVKEEK 416
+ +A+ KA ++ +S++M ++ K
Sbjct: 394 S-----AAQTKADKITYISCNSATMARDIK 418
>gi|339301899|ref|ZP_08650978.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus agalactiae
ATCC 13813]
gi|319744646|gb|EFV96993.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus agalactiae
ATCC 13813]
Length = 468
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 153/330 (46%), Gaps = 48/330 (14%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A++ VR G +++ +H +V I I+A + R +++ +V+P
Sbjct: 140 AYRNKAQVPVRRVDGQLETGFFRKNSHTLVSIEDYLIQEKEIDALINFTRDLLRKFDVKP 199
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE+ ++G +R +L + G++ + LV P +++ + E
Sbjct: 200 YDEEQQSGLIR-----------NLVVRRGHYTGQLMLVLVTTR-----PKIFRIDQMIEK 243
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
L S + S+ N +NVIFG +R L G + + G +++ SF
Sbjct: 244 LVSAFPS------VVSIMQNINDRNSNVIFGKEFRTLYGSDTIEDQMLGNTYAISAQSFY 297
Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q NT + L +K + + V D Y+G G IGLS+ A++ + V VE+
Sbjct: 298 QVNTEMAEKLYQKAIDFSDLNSEDIVIDAYSGIGTIGLSV--AKQVKHVYGVEV------ 349
Query: 337 SFEKTVSRLPKSVDGN---ISWHNADNSIEPLS-WL---VGSDVLVVDPPRKGLDSSLVH 389
EK VS ++ N S + AD++ ++ WL + V++VDPPRKGL S V+
Sbjct: 350 -VEKAVSDAKENATRNGITNSTYVADSAENAMAKWLKEGIKPTVIMVDPPRKGLTESFVY 408
Query: 390 ALQSIGSAERKAKSLSE---SSSSMVKEEK 416
+ +A+ KA ++ +S++M ++ K
Sbjct: 409 S-----AAQTKADKITYISCNSATMARDIK 433
>gi|417312680|ref|ZP_12099392.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA04375]
gi|327389388|gb|EGE87733.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA04375]
Length = 451
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 140/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVVLVTTR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTTIDFAELKEDDVVIDAYSGIGTIGLSV--AKHVKEVYGVEVIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K ++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 342 SKKN-AQLNHISNTHYVCDTAENAMK--NWLKEGIQPTVILVDPPRKGLTESFIKASSQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|296129134|ref|YP_003636384.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Cellulomonas flavigena
DSM 20109]
gi|296020949|gb|ADG74185.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Cellulomonas flavigena
DSM 20109]
Length = 374
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 136/305 (44%), Gaps = 42/305 (13%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +AK+ V GT +P +G+ H V D+ C + P ++AA L + + P
Sbjct: 54 GFRNKAKMVVAGTVEAPTLGILDGHGHGV-DLQGCPLYPPAVSAAFSPLADFVTRARLTP 112
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YD RTG+L++V + T P +G++ + V S E+LA
Sbjct: 113 YDVPTRTGELKHVLV------TGSP------DGELMVRFVLRST----------EALARI 150
Query: 219 LWRNGGSRSREHYIHSVWA--NFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
R R + H V A N Q + V+ G R L +V G+D+ L P S
Sbjct: 151 --RKHLPRLQTDLPHLVVASVNVQPAHAAVLEGEREIPLTARETLRMHVNGLDLHLRPRS 208
Query: 277 FGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q NT L R+ + A S DLY G G G +L AR R V VE + E+
Sbjct: 209 FFQTNTEVAAALYRQALAWADEAAVTSAWDLYCGVG--GFALHLARAGRQVVGVEASAEA 266
Query: 335 QLSFEKTV--SRLPKS--VDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHA 390
+S E T + LP + V G+ + D + P D++VV+PPR+GL L
Sbjct: 267 VVSAELTARDAGLPGTRFVAGDATAFALDATDVP-------DLVVVNPPRRGLGEPLSRW 319
Query: 391 LQSIG 395
L++ G
Sbjct: 320 LEASG 324
>gi|354808062|ref|ZP_09041506.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus curvatus
CRL 705]
gi|354513470|gb|EHE85473.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus curvatus
CRL 705]
Length = 454
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/323 (22%), Positives = 144/323 (44%), Gaps = 68/323 (21%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + G Y++ +H V+ + P+I+ A++++R ++ ++P
Sbjct: 128 GYRNKAQVPVRFIDGALTTGFYRKHSHQVMPMEDFYIQDPKIDEAIKVIRDILRRFYIDP 187
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-----E 213
Y+E+ G L+ + + Y+ ++ +V+ +R++K P + ++ +
Sbjct: 188 YNENTHKGVLKTIMVRRGYYSH-------------EMMIVFITRSKKLPAAREIAVEIKK 234
Query: 214 SLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLA 273
+L E + S+ N + NVIFG+ + + G + + G+ ++
Sbjct: 235 ALPEVV--------------SIMQNVNAAQTNVIFGDETKLIAGRDFIRDELMGLKFEIS 280
Query: 274 PSSFGQANTRAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAAARKCRSVKCVEIN 331
SF Q N ++L K + +V D Y+G G I SLA A+ + V VE+
Sbjct: 281 AQSFYQVNPVQTEVLYNKAIEAAELTGNETVIDAYSGIGTI--SLAVAKHAKQVYGVEVV 338
Query: 332 KESQLSFEKTVSRLPKSVDGNISWHNAD-NSIEPLSWLVGS---------------DVLV 375
+ + + + HNA N IE + + +G D L+
Sbjct: 339 ESAVMD----------------ARHNAKINGIENVEFTLGKAEEVMAQWQADDLKVDALI 382
Query: 376 VDPPRKGLDSSLVHALQSIGSAE 398
VDPPRKGL++S + A+ + A+
Sbjct: 383 VDPPRKGLEASFIEAVGQLKPAK 405
>gi|423070573|ref|ZP_17059349.1| hypothetical protein HMPREF9177_00666 [Streptococcus intermedius
F0413]
gi|355365659|gb|EHG13381.1| hypothetical protein HMPREF9177_00666 [Streptococcus intermedius
F0413]
Length = 451
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 80/324 (24%), Positives = 149/324 (45%), Gaps = 38/324 (11%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ I P I+ + R ++ +++PY
Sbjct: 126 YRNKAQIPVRRVNGQLETGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE ++TG +R +L + +G++ + LV +R++ +E L E
Sbjct: 186 DEKEKTGLIR-----------NLVVRRGHYSGEIMVILV-TTRSKIFRVEQLIERLVEAF 233
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
I S+ N N IFG WR L G + + D +A +F Q
Sbjct: 234 PA----------IESIMQNINDQNTNTIFGKDWRTLHGRDYITDRMLNNDFQIAAPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + A V D Y+G G IGLS+ A++ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFSELAADDVVLDAYSGIGTIGLSV--AKQVKQVYGVEVIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWH----NADNSIEPLSWL-VGSDVLVVDPPRKGLDSSLVHALQ 392
+K ++G + H +A+N++ S + DV++VDPPRKGL S + +
Sbjct: 342 SQKNA-----EINGITNTHYVCDSAENAMANWSKQDIKPDVILVDPPRKGLTESFIES-- 394
Query: 393 SIGSAERKAKSLSESSSSMVKEEK 416
S+ +K +S + ++M ++ K
Sbjct: 395 SVSMEPKKIIYISCNPATMTRDIK 418
>gi|339449412|ref|ZP_08652968.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
fructivorans KCTC 3543]
Length = 470
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 84/312 (26%), Positives = 130/312 (41%), Gaps = 57/312 (18%)
Query: 98 YGWRCRAKLAVRGTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNV 156
Y +R +A+ VR + +I GLY+EGTH VVD+ C +P + L + I+ELN+
Sbjct: 142 YEYRNKAQFQVRTQADGKVIAGLYKEGTHEVVDMETCSVQYPLTMKVMRALVEMIQELNI 201
Query: 157 EPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLA 216
+ E + +G L+ +L VQ+ + N +P K L
Sbjct: 202 PTFVESNHSGILK-----------TLVVRAALNTNDVQVVFITN-----TPKLVKKHQLL 245
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
E + R + SV N + +I+G + HL G E + G+ L+P +
Sbjct: 246 EMIA------DRLPEVTSVMQNINPGDSPLIWGEKTVHLAGNDSITEKIDGLSFELSPRA 299
Query: 277 FGQANTRAFDILLRKLQKYVPYGAS------VTDLYAGAGVIGLSLAAARKCRSVKCVEI 330
F Q N+ I+ KL + + D Y+G G IGL+LA
Sbjct: 300 FLQLNS----IMTPKLYHLAGEALNLDSDDRLIDAYSGVGTIGLTLA------------- 342
Query: 331 NKESQLSFEKTVSRLPKSVDGNISWHNADN------SIEPL--SWLVGS---DVLVVDPP 379
N+ +++ TV + N ++ DN S E L W+ LVVDPP
Sbjct: 343 NQVAEVRGMDTVQEAITDANHNAKINHIDNAQYYFGSAEDLMPQWMAEGWRPTALVVDPP 402
Query: 380 RKGLDSSLVHAL 391
R GLD L+ A+
Sbjct: 403 RVGLDQHLIDAI 414
>gi|228476330|ref|ZP_04061031.1| 23S rRNA-methyltransferase RumA [Staphylococcus hominis SK119]
gi|228269613|gb|EEK11119.1| 23S rRNA-methyltransferase RumA [Staphylococcus hominis SK119]
Length = 454
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 90/358 (25%), Positives = 150/358 (41%), Gaps = 53/358 (14%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDFTF--DSCRL-YGWRCRAKLA 107
C +++ C GC + + + + + F L+ T D+ + Y WR R K
Sbjct: 73 CIYYEKCGGCQLQHMSYESQLKMKKQQVVNLFHKKAKLEETVIHDTIGMDYPWRYRNKSQ 132
Query: 108 V---RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+ + + ++G Y++ +H+++D+ C + + ++Q + ELNV Y+E ++
Sbjct: 133 LPVGKDKNNKTIMGYYRQRSHDIIDMDSCLIQDEKQQELMNDIKQWLNELNVSIYNEKNK 192
Query: 165 TGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGG 224
G LR+V + + Y +V I V N K E+L
Sbjct: 193 KGLLRHVVIRTSHY-----------TNEVMIIFVTNGSKFKEA-----ETLVH------- 229
Query: 225 SRSREHY--IHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
R E Y I S+ N S +NVI G + L G+ + + ++ SF Q N+
Sbjct: 230 -RLTEVYPNITSIKQNINNSHSNVIMGKQSMTLYGKDKITDQLSETIFEISDQSFYQINS 288
Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLA-AARKCRSVKCV----EINKESQ 335
+ L +K Y + V D Y G G IGL +A A+ V+ V + K++
Sbjct: 289 VQTEKLYQKAIDYAQLSGNEIVLDTYCGIGTIGLYMAPVAKHVYGVEIVPSAIQDAKQNA 348
Query: 336 L--SFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHAL 391
L F+ T K+ + I W IEP DV++VDPPRKG D + L
Sbjct: 349 LINHFDNTTFECGKAEEVIIEW--KQKGIEP-------DVIMVDPPRKGCDQVFIETL 397
>gi|418618812|ref|ZP_13181667.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus hominis
VCU122]
gi|374826691|gb|EHR90578.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus hominis
VCU122]
Length = 454
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 90/358 (25%), Positives = 150/358 (41%), Gaps = 53/358 (14%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDFTF--DSCRL-YGWRCRAKLA 107
C +++ C GC + + + + + F L+ T D+ + Y WR R K
Sbjct: 73 CIYYEKCGGCQLQHMSYESQLKMKKQQVVNLFHKKAKLEETVIHDTIGMDYPWRYRNKSQ 132
Query: 108 V---RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+ + + ++G Y++ +H+++D+ C + + ++Q + ELNV Y+E ++
Sbjct: 133 LPVGKDKNNKTIMGYYRQRSHDIIDMDSCLIQDEKQQELMNDIKQWLNELNVSIYNEKNK 192
Query: 165 TGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGG 224
G LR+V + + Y +V I V N K E+L
Sbjct: 193 KGLLRHVVIRTSHY-----------TNEVMIIFVTNGSKFKEA-----ETLVH------- 229
Query: 225 SRSREHY--IHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
R E Y I S+ N S +NVI G + L G+ + + ++ SF Q N+
Sbjct: 230 -RLTEVYPNITSIKQNINNSHSNVIMGKQSMTLYGKDKITDQLSETIFEISDQSFYQINS 288
Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLA-AARKCRSVKCV----EINKESQ 335
+ L +K Y + V D Y G G IGL +A A+ V+ V + K++
Sbjct: 289 VQTEKLYQKAIDYAQLSGNEIVLDTYCGIGTIGLYMAPVAKHVYGVEIVPSAIQDAKQNA 348
Query: 336 L--SFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHAL 391
L F+ T K+ + I W IEP DV++VDPPRKG D + L
Sbjct: 349 LINHFDNTTFECGKAEEVIIEW--KQKGIEP-------DVIMVDPPRKGCDQVFIETL 397
>gi|417676782|ref|ZP_12326193.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA17545]
gi|332075642|gb|EGI86110.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA17545]
Length = 543
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 139/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFFIQDPVIDELVVALRDLLRRYDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P ++E L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVILVTTR-----PKVFRVEQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDFITDQMLGNDYQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTTIDFAELKEDDVVIDAYSGIGTIGLSV--AKHVKEVYGVEVIPEA-VE 340
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
K ++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 341 NSKKNAQLNHISNTHYVCDTAENAMK--NWLKEGIQPTVILVDPPRKGLTESFIKASSQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|331268633|ref|YP_004395125.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
BKT015925]
gi|329125183|gb|AEB75128.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
BKT015925]
Length = 495
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 93/372 (25%), Positives = 160/372 (43%), Gaps = 67/372 (18%)
Query: 54 CPHFQSCSGCT-HEFN---------------LHRPIIVDEATDFFKSIGLLD----FTFD 93
C ++ C GC+ FN L R + T K+I LD D
Sbjct: 101 CDIYKRCGGCSIQHFNYDAQLEFKKNRVKDCLERIGKLQVITKEEKNISYLDNKLAILHD 160
Query: 94 SCRL---YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQG 150
+ + Y +R + +L V + IG Y +HN++D+ C + V L R+
Sbjct: 161 TLGMQNPYRYRNKVQLPVGEENGEIKIGFYAPRSHNIIDMDICYIQDEVGDTVVSLTREW 220
Query: 151 IKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSD 210
+++ N++PY+E+ G +R++ M +NT+ ++ +V +R + P+
Sbjct: 221 MEKYNIKPYNEEKNVGIVRHI-MIRRGFNTN------------EVMVVIVTRTNELPHK- 266
Query: 211 KLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDI 270
E L E + +N + S+ N + NV+ G L G+ + +G
Sbjct: 267 --EELIELILKNIDG------VTSIVQNINSKKTNVVLGLNNITLYGKEYISDYIGEFKF 318
Query: 271 SLAPSSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAA-ARKCRSVKC 327
+++P SF Q N ++L K +Y + V D Y G G I L L+ A+K V+
Sbjct: 319 NISPLSFFQVNPIQTEVLYNKALEYAALTGNEVVFDAYCGTGTISLFLSKNAKKVYGVEI 378
Query: 328 VE-------IN-KESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPP 379
VE IN KE+ ++ + + + V N+ + + +DV+VVDPP
Sbjct: 379 VEDAIENAKINAKENNVNNAEFIVGKSEEVIPNL-----------IKQGIKADVVVVDPP 427
Query: 380 RKGLDSSLVHAL 391
RKG D SL+ A+
Sbjct: 428 RKGCDKSLLDAI 439
>gi|297585038|ref|YP_003700818.1| TrmA family RNA methyltransferase [Bacillus selenitireducens MLS10]
gi|297143495|gb|ADI00253.1| RNA methyltransferase, TrmA family [Bacillus selenitireducens
MLS10]
Length = 462
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 86/358 (24%), Positives = 161/358 (44%), Gaps = 51/358 (14%)
Query: 54 CPHFQSCSGC-----THEFNLH-RPIIVDEATDFFKSIG----LLDFTFDSCRLYGWRCR 103
CP +++C GC ++E L + ++++A + I ++ T + +R +
Sbjct: 79 CPVYEACGGCQLQHVSYERQLQAKKELLEQAFSRYTKIPPHKLVIHDTIGMDNPWHYRNK 138
Query: 104 AKLAVRGTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+++ V T +I GLY +H++VDI C HP N L++ I +L + YD++
Sbjct: 139 SQMQVGQTEDDTVIAGLYAADSHDLVDIDECIVQHPLTNEVNRELKRIISDLKLSIYDKE 198
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
+ G +R SL + + Q+TLV + ++ P D +
Sbjct: 199 RKKGLVR-----------SLVVRTAFETDEWQLTLVISKKS--FPKQDVFVA-------- 237
Query: 223 GGSRSREHY--IHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQA 280
R +E + + S+ N S ++FG + + + GE+ E +G +D LAP SF Q
Sbjct: 238 ---RVKEAFPSVTSISLNVNPSDTPLVFGEQTKTIEGESSIRERLGELDYQLAPESFFQL 294
Query: 281 NTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSF 338
N +L ++K + A+ V D Y G G IG + AA + ++ ++I + + +
Sbjct: 295 NPAQTKVLYDIVKKMAGFKATDRVVDAYCGVGSIG--IWAASEAGELRGMDITEAAVANA 352
Query: 339 EKTVSRLPKSVDGNISWHNADNSIEP--LSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ + G + H + E + W +D ++VDPPR GLD +L+ +
Sbjct: 353 RRNAAEA-----GIANAHYETGTAEDILMKWQKEGFTADSIIVDPPRSGLDRTLIETV 405
>gi|400290035|ref|ZP_10792062.1| putative RNA methyltransferase [Streptococcus ratti FA-1 = DSM
20564]
gi|399920826|gb|EJN93643.1| putative RNA methyltransferase [Streptococcus ratti FA-1 = DSM
20564]
Length = 451
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 81/335 (24%), Positives = 152/335 (45%), Gaps = 30/335 (8%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+ +R +A++ VR + G +++ +H+++ I I+ + + ++ +++
Sbjct: 124 FAYRNKAQIPVRRVNGQLETGFFRKNSHDLMPIEDFYIQDKEIDRLINFMHDLLRRFDIK 183
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
PYDE ++TG +R +L Y G++ + LV P ++E L E
Sbjct: 184 PYDEKEQTGLIR-----------NLVVRRGYYTGQMMLVLVTT-----RPKIFRIEQLIE 227
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
+ + + S+ N +N IFG +R L G + + G +++ SF
Sbjct: 228 KIVTEFPA------VKSIIQNINDKNSNAIFGPEFRTLYGVDTIEDTMLGNRFAISAQSF 281
Query: 278 GQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q NT + L + + A V D Y+G G IGLS A++ ++V VE+ + +
Sbjct: 282 YQVNTVMAEKLYQTAIDFSELTADDVVIDAYSGIGTIGLSF--AKQVKAVYGVEVVEAAV 339
Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL-VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K + L K + + +A+N++ S + DV++VDPPRKGL S + A S
Sbjct: 340 RDAQKNAA-LNKITNAHYVADSAENAMANWSKQGIKPDVILVDPPRKGLSQSFIKA--SA 396
Query: 395 GSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQ 429
+K +S + ++M ++ K L K VQ
Sbjct: 397 AMQPKKITYISCNPATMARDIKLYEELGYKLTKVQ 431
>gi|47569584|ref|ZP_00240262.1| RNA methyltransferase, TrmA family [Bacillus cereus G9241]
gi|47553767|gb|EAL12140.1| RNA methyltransferase, TrmA family [Bacillus cereus G9241]
Length = 458
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 84/353 (23%), Positives = 152/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMKTPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + PN + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N NVIFG++ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 293 PEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 352
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 353 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|433443315|ref|ZP_20408751.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anoxybacillus
flavithermus TNO-09.006]
gi|432002160|gb|ELK23016.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anoxybacillus
flavithermus TNO-09.006]
Length = 454
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 135/300 (45%), Gaps = 36/300 (12%)
Query: 100 WRCRAKLAV-RGTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
WR R K V G L+ G Y+E +H+++D+ C + V+ ++Q ++ N+
Sbjct: 127 WRYRNKAQVPVGEREGGLVAGFYKERSHDIIDMDTCLIQQEMNDIVVQTVKQICEKYNIP 186
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLA 216
Y+E G LR++ MA RY ++ +V +R E+ P+ K+ + +
Sbjct: 187 AYNEQTHKGTLRHI-MA------------RYGATTKEVMVVLITRTEELPHKKKIVQEII 233
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
E + + S+ N NVI G+ + L G ++ +G I +++ S
Sbjct: 234 ETVPN----------VKSIIQNINPKRTNVIMGDETKVLWGAEYIYDYIGDIQFAISARS 283
Query: 277 FGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q N +L K +Y +V D Y G G I L L A+K + V VE+ E+
Sbjct: 284 FYQVNPEQTKVLYEKALEYAELTGEETVIDAYCGIGTISLFL--AKKAKKVYGVEVVPEA 341
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ K ++L +D N + + + W + +D +VVDPPRKG D SL+ +
Sbjct: 342 -IEDAKRNAKL-NGID-NAEFAVGEAEVVIPKWYEQGIEADCIVVDPPRKGCDESLLQTI 398
>gi|229159469|ref|ZP_04287487.1| Uncharacterized RNA methyltransferase [Bacillus cereus R309803]
gi|228624040|gb|EEK80848.1| Uncharacterized RNA methyltransferase [Bacillus cereus R309803]
Length = 465
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 85/354 (24%), Positives = 151/354 (42%), Gaps = 44/354 (12%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 85 ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRN 142
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 143 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQDVKRICEKHGISAYNEE 202
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL--ESLAEFLW 220
G LR+V MA RY +I LV+ +R + PN + E A+F
Sbjct: 203 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKQAIIEEITAKF-- 247
Query: 221 RNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQA 280
+ S+ N NVIFG++ L G ++ +G I +++ SF Q
Sbjct: 248 ---------PEVKSIVQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQV 298
Query: 281 NTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
N +L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 299 NPEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANR 358
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 359 NAA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 409
>gi|423077931|ref|ZP_17066621.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
rhamnosus ATCC 21052]
gi|357552809|gb|EHJ34573.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
rhamnosus ATCC 21052]
Length = 460
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 77/307 (25%), Positives = 136/307 (44%), Gaps = 50/307 (16%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR G Y++ +H++V I P+I+ A+ ++R +++ V P
Sbjct: 133 GYRNKAQVPVRLVRGELQTGFYKKHSHDLVPIEDFLIQDPKIDQAIVVVRDLLRKYQVPP 192
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKV--QITLVWNSRNEKSPN-SDKLESL 215
YDE G +R + + R G+ Q+ +V +R + P+ +D +E +
Sbjct: 193 YDERTNRGVIRNIMV---------------RRGRATHQMMIVLVARTWQVPHLNDIVEEI 237
Query: 216 AEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPS 275
L + SV N NVI G + + + G + + G + ++P
Sbjct: 238 TLALPE----------VTSVVVNLNDKRTNVILGRKSKTIYGRDYLLDKLLGSEFQISPV 287
Query: 276 SFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
SF Q N ++L K + +V D Y+G G I L++ AR + V VE+ +
Sbjct: 288 SFYQVNPIQTEVLYTKAIEAAGLTGKETVIDAYSGIGTISLTM--ARHAKQVYGVEVVES 345
Query: 334 SQLSFEKTVSR---------LPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLD 384
+ + +R + K+ D W +AD + DVL+VDPPRKGLD
Sbjct: 346 AVRDAKANAARNHIKNVTFEVGKAEDVMQKWKDADLPV---------DVLMVDPPRKGLD 396
Query: 385 SSLVHAL 391
+ + A+
Sbjct: 397 KTFIDAV 403
>gi|148239625|ref|YP_001225012.1| putative RNA methyltransferase [Synechococcus sp. WH 7803]
gi|147848164|emb|CAK23715.1| Hypothetical RNA methyltransferase [Synechococcus sp. WH 7803]
Length = 466
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 142/304 (46%), Gaps = 40/304 (13%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R RA + ++ +G Y+ G+H +V++ HC PR++A +E +++ + + N P
Sbjct: 131 GYRNRALIPLQRLEGELRLGYYRRGSHRIVNLNHCPVLDPRLDALIEPIKRDLSDTN-WP 189
Query: 159 YDEDDRTG-DLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
D D R LR++ + + R G++ I+LV S E P LE LA
Sbjct: 190 MDSDLRGKPGLRHLGLRIGV-----------RTGELLISLV--SATEHLPG---LEQLA- 232
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
G R + V N Q +N + G + L G+ E G+ + L ++F
Sbjct: 233 -----GQWMQRWPALKGVTLNVQPKRSNTVLGAQTLCLQGQDVIEEYFCGLTLQLGTTTF 287
Query: 278 GQANT-RAFDI--LLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINK-- 332
Q NT RA + L+R V A+V D Y G G I L LAAA +V +EIN+
Sbjct: 288 FQVNTERAEQVVTLIRDWIVGVAPSANVIDAYCGIGTIALPLAAA--GLNVIGLEINRAS 345
Query: 333 --ESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHA 390
++Q + + R +DG++ H + P+ VLVVDPPRKGL ++
Sbjct: 346 VIQAQENARRNALRTATFIDGDVVDHL--RQLLPI-----HQVLVVDPPRKGLAPDVLQM 398
Query: 391 LQSI 394
+ +I
Sbjct: 399 ILAI 402
>gi|406837752|ref|ZP_11097346.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus vini DSM 20605]
Length = 457
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 82/309 (26%), Positives = 137/309 (44%), Gaps = 53/309 (17%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H V + PRI+ + ++R ++E + Y
Sbjct: 129 YRNKAQIPVRMVNGQLETGFFKQRSHQFVVLHDFLIQDPRIDQILMVVRDILREFEIPAY 188
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
+E +G LR++ + Y+ G+V + LV SR + N E +
Sbjct: 189 NEPAHSGILRHIVIRRGHYS-----------GEVMVILVTRSRKLPAANQIAQEII---- 233
Query: 220 WRNGGSRSREH--YIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
EH + SV+ N + NVI G + L G+ + + GI+ +++P SF
Sbjct: 234 ---------EHCPDVVSVYQNINPARTNVILGKTEKLLAGKEQITDQLNGINFAISPQSF 284
Query: 278 GQANTRAFDILLRKLQKYVPYGA------SVTDLYAGAGVIGLSLAAARKCRSVKCVEIN 331
Q N+ + K+ ++ A +V D Y G G I L+LA + + V VEI
Sbjct: 285 FQVNS----LQTEKIYQFAIEAAHLTGQETVIDAYCGIGTISLNLAL--QAKRVLGVEIV 338
Query: 332 KESQLSFEKT-----VSRLPKSVDGNISWHN--ADNSIEPLSWLVGSDVLVVDPPRKGLD 384
E+ +K + + V + W AD ++P DV+V DPPRKGLD
Sbjct: 339 PEAIADAKKNAALNRIKNVEFQVGSAVEWMKKWADQDLKP-------DVVVFDPPRKGLD 391
Query: 385 SS-LVHALQ 392
S L ALQ
Sbjct: 392 SEVLASALQ 400
>gi|421769492|ref|ZP_16206199.1| RNA methyltransferase TrmA family [Lactobacillus rhamnosus LRHMDP2]
gi|421772228|ref|ZP_16208884.1| RNA methyltransferase, TrmA family [Lactobacillus rhamnosus
LRHMDP3]
gi|411183796|gb|EKS50931.1| RNA methyltransferase, TrmA family [Lactobacillus rhamnosus
LRHMDP3]
gi|411184623|gb|EKS51755.1| RNA methyltransferase TrmA family [Lactobacillus rhamnosus LRHMDP2]
Length = 454
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 77/307 (25%), Positives = 136/307 (44%), Gaps = 50/307 (16%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR G Y++ +H++V I P+I+ A+ ++R +++ V P
Sbjct: 127 GYRNKAQVPVRLVRGELQTGFYKKHSHDLVPIEDFLIQDPKIDQAIVVVRDLLRKYQVPP 186
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKV--QITLVWNSRNEKSPN-SDKLESL 215
YDE G +R + + R G+ Q+ LV +R + P+ +D +E +
Sbjct: 187 YDERTNRGVIRNIMV---------------RRGRATHQMMLVLVARTWQVPHLNDIVEEI 231
Query: 216 AEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPS 275
+ + SV N NVI G + + + G + + G + ++P
Sbjct: 232 TLAIPE----------VTSVVVNLNDKRTNVILGRKSKTIYGRDYLLDKLLGSEFQISPV 281
Query: 276 SFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
SF Q N ++L K + +V D Y+G G I L++ AR + V VE+ +
Sbjct: 282 SFYQVNPIQTEVLYTKAIEAAGLTGKETVIDAYSGIGTISLTM--ARHAKQVYGVEVVES 339
Query: 334 SQLSFEKTVSR---------LPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLD 384
+ + +R + K+ D W +AD + DVL+VDPPRKGLD
Sbjct: 340 AVRDAKANAARNHIKNVTFEVGKAEDVMQKWKDADLPV---------DVLMVDPPRKGLD 390
Query: 385 SSLVHAL 391
+ + A+
Sbjct: 391 KTFIDAV 397
>gi|418070310|ref|ZP_12707585.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus R0011]
gi|357539730|gb|EHJ23747.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus R0011]
Length = 457
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 77/307 (25%), Positives = 136/307 (44%), Gaps = 50/307 (16%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR G Y++ +H++V I P+I+ A+ ++R +++ V P
Sbjct: 130 GYRNKAQVPVRLVRGELQTGFYKKHSHDLVPIEDFLIQDPKIDQAIVVVRDLLRKYQVPP 189
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKV--QITLVWNSRNEKSPN-SDKLESL 215
YDE G +R + + R G+ Q+ +V +R + P+ +D +E +
Sbjct: 190 YDERTNRGVIRNIMV---------------RRGRATHQMMIVLVARTWQVPHLNDIVEEI 234
Query: 216 AEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPS 275
L + SV N NVI G + + + G + + G + ++P
Sbjct: 235 TLALPE----------VTSVVVNLNDKRTNVILGRKSKTIYGRDYLLDKLLGSEFQISPV 284
Query: 276 SFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
SF Q N ++L K + +V D Y+G G I L++ AR + V VE+ +
Sbjct: 285 SFYQVNPIQTEVLYTKAIEAAGLTGKETVIDAYSGIGTISLTM--ARHAKQVYGVEVVES 342
Query: 334 SQLSFEKTVSR---------LPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLD 384
+ + +R + K+ D W +AD + DVL+VDPPRKGLD
Sbjct: 343 AVRDAKANAARNHIKNVTFEVGKAEDVMQKWKDADLPV---------DVLMVDPPRKGLD 393
Query: 385 SSLVHAL 391
+ + A+
Sbjct: 394 KTFIDAV 400
>gi|253575073|ref|ZP_04852412.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251845529|gb|EES73538.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 333
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 83/302 (27%), Positives = 136/302 (45%), Gaps = 40/302 (13%)
Query: 100 WRCRAKLAV-RGTSTSPLIG-LYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
WR R K V G L+G Y G+H ++D+ C H + + ++ + L +
Sbjct: 5 WRYRNKAQVPVGVIDGALVGGFYARGSHRIIDMETCLIQHESNDDVISRVKAIGRRLGIT 64
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
YDE+ G LR+V + V +R G++ + LV N ++ P D+
Sbjct: 65 AYDEETGQGLLRHVVVKVG-----------FRTGEMMLVLVTNG--DRIPREDE------ 105
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
W R + S+ N T NVIFG+ R L G ++ +G + +++ SF
Sbjct: 106 --W-IAAIREELPAVVSICQNVNTRQTNVIFGDVTRVLWGREVIYDYIGDVKFAISARSF 162
Query: 278 GQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q N ++L K +Y +V D Y G G I L L A+ + V VEI KE+
Sbjct: 163 YQVNPIQTEVLYGKTVEYAGLTGQETVIDAYCGIGTISLFL--AQHAKRVYGVEIVKEAI 220
Query: 336 LSFEKTVSRLPKSVDG--NISWH-NADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVH 389
+R+ ++G ++++ A + P +W + +DV+VVDPPRKG D L+
Sbjct: 221 ED-----ARVNAKLNGMNHVTFEVGASEDVIP-AWKEQGIEADVIVVDPPRKGCDPHLLD 274
Query: 390 AL 391
+
Sbjct: 275 TI 276
>gi|431751367|ref|ZP_19540057.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2620]
gi|430615483|gb|ELB52432.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2620]
Length = 460
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 81/363 (22%), Positives = 156/363 (42%), Gaps = 60/363 (16%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRC 102
CP + C GC + + + +++ +A + FK G + T + +R
Sbjct: 76 CPVYYECGGCQLQHLAYQAQLDFKKDLLL-QALEKFKPAGFRSYQLLPTIGMDDPWHYRN 134
Query: 103 RAKLAVRGTSTSPLI--GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYD 160
+A+ +R + GLY+ +H +V I C PR + + Q + + + YD
Sbjct: 135 KAQFQLRKNKQTQKTEAGLYEANSHQLVPITDCLVQEPRTQKVMNTVVQLLNKFDAPIYD 194
Query: 161 EDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLW 220
E +G R + + + + G++Q+ V+ +R++K P + +
Sbjct: 195 ERTNSGIFRTIMVRIGV-----------KTGELQV--VFITRSKKFPQKNA-------MI 234
Query: 221 RNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQA 280
R R E + S+ N Q +++ G+ H+ G+ E + + L+P +F Q
Sbjct: 235 REINERLPE--VVSIMQNVQAQKTSLVMGDETIHVWGKEAIEEQINEVTFDLSPRAFFQL 292
Query: 281 NTRAFDILLRKLQKYVPYGA----SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
N + ++L + K + GA ++ D Y G G IGLS+ A+K + V+ ++ ++
Sbjct: 293 NPQQTELLYGEGIKAL--GAQPDETIVDAYCGVGTIGLSV--AKKVKEVRGMDTVPQAIA 348
Query: 337 SFEKTVSRLPKSVDGNISWHNADNSIEPL-----SWL---VGSDVLVVDPPRKGLDSSLV 388
++ RL +HN + WL D ++VDPPR GLD++L+
Sbjct: 349 DAKRNAERL--------GYHNTRYEVGTAEQVLPKWLNEGFQPDGIIVDPPRTGLDNALI 400
Query: 389 HAL 391
+L
Sbjct: 401 QSL 403
>gi|431033011|ref|ZP_19490857.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1590]
gi|430564112|gb|ELB03296.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1590]
Length = 457
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 135/311 (43%), Gaps = 58/311 (18%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+G+R +A++ VR G Y++ +H++V I P I+ A++++R ++ V
Sbjct: 129 FGYRNKAQIPVRRIDGQLATGFYKKNSHDLVPIEDFYIQDPVIDQAIKVVRDILQRFQVR 188
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLA 216
Y+E G LR++ + Y+ + +V +R EK S ++ E++
Sbjct: 189 GYNEKKNEGQLRHIIIRRGHYSHEM-------------MVVLVTRKEKFFKSKEIAEAIH 235
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
E L + SV N NVI G++ + L G + + G ++ S
Sbjct: 236 EELPE----------VVSVIQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKS 285
Query: 277 FGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q NT+ + L + K+ V D Y+G G IGLSL A K V +E+
Sbjct: 286 FYQVNTQQAEYLYQTAIKFAELDKKDIVIDAYSGIGTIGLSL--ADKVDKVYGMEV---- 339
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPP 379
+P++++ + ++ +N IE + + VG V+VVDPP
Sbjct: 340 ----------IPEAIE-DAQFNALNNKIENVYYEVGKAEKVMKKWQEKGIKPSVIVVDPP 388
Query: 380 RKGLDSSLVHA 390
RKGLD + +
Sbjct: 389 RKGLDHHFIES 399
>gi|257888569|ref|ZP_05668222.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,141,733]
gi|424763200|ref|ZP_18190679.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX1337RF]
gi|431030918|ref|ZP_19490627.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1590]
gi|431758489|ref|ZP_19547116.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E3083]
gi|431763963|ref|ZP_19552510.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E3548]
gi|257824623|gb|EEV51555.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,141,733]
gi|402423011|gb|EJV55231.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX1337RF]
gi|430565093|gb|ELB04263.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1590]
gi|430617547|gb|ELB54420.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E3083]
gi|430621419|gb|ELB58181.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E3548]
Length = 460
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 81/363 (22%), Positives = 156/363 (42%), Gaps = 60/363 (16%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRC 102
CP + C GC + + + +++ +A + FK G + T + +R
Sbjct: 76 CPVYYECGGCQLQHLAYQAQLDFKKDLLL-QALEKFKPAGFRSYQLLPTIGMDDPWHYRN 134
Query: 103 RAKLAVRGTSTSPLI--GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYD 160
+A+ +R + GLY+ +H +V I C PR + + Q + + + YD
Sbjct: 135 KAQFQLRKNKQTQKTEAGLYEANSHQLVPITDCLVQEPRTQKVMNTVVQLLNKFDAPIYD 194
Query: 161 EDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLW 220
E +G R + + + + G++Q+ V+ +R++K P + +
Sbjct: 195 ERTNSGIFRTIMVRIGV-----------KTGELQV--VFITRSKKFPQKNA-------MI 234
Query: 221 RNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQA 280
R R E + S+ N Q +++ G+ H+ G+ E + + L+P +F Q
Sbjct: 235 REINERLPE--VVSIMQNVQAQKTSLVMGDETIHVWGKEAIEEQINEVTFDLSPRAFFQL 292
Query: 281 NTRAFDILLRKLQKYVPYGA----SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
N + ++L + K + GA ++ D Y G G IGLS+ A+K + V+ ++ ++
Sbjct: 293 NPQQTELLYGEGIKAL--GAQPDETIVDAYCGVGTIGLSV--AKKVKEVRGMDTVPQAIA 348
Query: 337 SFEKTVSRLPKSVDGNISWHNADNSIEPL-----SWL---VGSDVLVVDPPRKGLDSSLV 388
++ RL +HN + WL D ++VDPPR GLD++L+
Sbjct: 349 DAKRNAERL--------GYHNTRYEVGTAEQVLPKWLNEGFQPDGIIVDPPRTGLDNALI 400
Query: 389 HAL 391
+L
Sbjct: 401 QSL 403
>gi|257869135|ref|ZP_05648788.1| RNA methyltransferase [Enterococcus gallinarum EG2]
gi|257803299|gb|EEV32121.1| RNA methyltransferase [Enterococcus gallinarum EG2]
Length = 458
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 94/361 (26%), Positives = 153/361 (42%), Gaps = 56/361 (15%)
Query: 54 CPHFQSCSGCTHEFNLH------RPIIVDEATDFFKSIG----LLDFTFDSCRLYGWRCR 103
C + C GC + ++ + ++ +A FK G +L T + +R +
Sbjct: 76 CKFYDRCGGCQLQHLVYEKQLDFKKDLLKQALTKFKPKGYQKYILKDTIGMEEPWHYRNK 135
Query: 104 AKLAVRGTSTSPLI--GLYQEGTHNVVDIPHC----KAHHPRINAAVELLRQGIKELNVE 157
A+ +R + S I GLY+ +H +V I C KA IN V+LL + +
Sbjct: 136 AQFQLRYDTKSKRIEAGLYEMDSHRLVAIDDCLVQEKATQDVINGLVQLLNK----YQLP 191
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
YDE +G LR + + V G+VQ+ + NS N+
Sbjct: 192 IYDERKNSGILRTLMVRVGR-----------ATGEVQVVFITNSSKLPQKNA-------- 232
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
L R R + + S+ N Q+ +VI G+ HL G+ E + + L+P +F
Sbjct: 233 -LIREINQRMPQ--VVSIMQNVQSKKTSVIMGDETLHLWGKEAIEERLQELTFDLSPRAF 289
Query: 278 GQANTRAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q N + IL + K + +V D Y G G IGLSLA + + V+ ++I ++
Sbjct: 290 FQLNPQQTSILYDEAIKALALTKNETVVDAYCGVGTIGLSLA--KHAKEVRGMDIIPQAI 347
Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWLVGS---DVLVVDPPRKGLDSSLVHA 390
+ ++ R+ + + H + E L W D +VVDPPR GLD L+ A
Sbjct: 348 ENAKENARRIQAN-----NTHYETGTAEDLLPKWFAAGFRPDSIVVDPPRTGLDDHLLQA 402
Query: 391 L 391
L
Sbjct: 403 L 403
>gi|417849209|ref|ZP_12495134.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
SK1080]
gi|339456836|gb|EGP69418.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
SK1080]
Length = 451
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 79/324 (24%), Positives = 148/324 (45%), Gaps = 38/324 (11%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ + LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFYIQDPVIDQVIVALRDLLRRYDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P ++E L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHHSGQIMVILVTTR-----PKIFRVEQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G ++ +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNSFQISGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + + VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELSEDDVVIDAYSGIGTIGLSV--AKHVKEIYGVEVIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWH----NADNSIEPLSWL-VGSDVLVVDPPRKGLDSSLVHALQ 392
+K S++G + H A+N++ S + DV++VDPPRKGL S + A
Sbjct: 342 SQKNA-----SINGITNAHYVCDTAENAMTKWSKNGIKPDVIIVDPPRKGLTESFIKA-- 394
Query: 393 SIGSAERKAKSLSESSSSMVKEEK 416
S+ K +S + ++M ++ K
Sbjct: 395 SVAMQPEKITYVSCNPATMARDIK 418
>gi|354583861|ref|ZP_09002758.1| RNA methyltransferase, TrmA family [Paenibacillus lactis 154]
gi|353197123|gb|EHB62616.1| RNA methyltransferase, TrmA family [Paenibacillus lactis 154]
Length = 544
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 88/310 (28%), Positives = 132/310 (42%), Gaps = 56/310 (18%)
Query: 100 WRCRAKLAV-RGTSTSPLIG-LYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
WR R K V G + LIG Y G+H +VD+ C H + + V ++ + L +
Sbjct: 217 WRYRNKSQVPIGVTEGGLIGGFYARGSHRIVDMETCLIQHEQNDEVVRRVKAIGRRLGIT 276
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
YDE+ G LR+V + + + G++ I LV N E+ P ++
Sbjct: 277 AYDEESGQGLLRHVVVKIG-----------FATGEMMIVLVTNG--ERIPRMNE------ 317
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
W R + SV N T NVIFG+ R L G + +G + +++ SF
Sbjct: 318 --WITA-IREELPAVVSVCQNINTRKTNVIFGDVTRVLWGREVIHDYIGDVKFAISARSF 374
Query: 278 GQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAA-ARKCRSVKCV------ 328
Q N ++L K +Y +V D Y G G I L LA A+K V+ V
Sbjct: 375 YQVNPAQTEVLYGKTVEYAGLTGEETVIDAYCGIGTISLFLAQHAKKVYGVEIVKEAIED 434
Query: 329 -----EINKESQLSFEKTVSR--LPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRK 381
E+N + + FE S +P+ W + IE +DV+VVDPPRK
Sbjct: 435 ARANAELNGMAHVEFEVGASEDVIPR-------WK--EQGIE-------ADVIVVDPPRK 478
Query: 382 GLDSSLVHAL 391
G D L+ +
Sbjct: 479 GCDPRLLETI 488
>gi|384049105|ref|YP_005497122.1| TrmA family RNA methyltransferase [Bacillus megaterium WSH-002]
gi|345446796|gb|AEN91813.1| RNA methyltransferase, TrmA family [Bacillus megaterium WSH-002]
Length = 457
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 86/357 (24%), Positives = 152/357 (42%), Gaps = 52/357 (14%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLL-----DFTFDSCRLYGWRCRAK 105
CP ++ C GC + + + D IG L T + +R +A+
Sbjct: 78 CPVYKQCGGCQLQHVSYEGQLQFKQKQVKDVMARIGHLPDVPVHSTLGMNDPWRYRNKAQ 137
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
+ V + G YQ+ +H+++++ C + V+ ++ ++ V Y E
Sbjct: 138 VPVAEREGGLVAGFYQQRSHDIINMDACLIQQQANDDVVQAVKSICEKHGVSAYQEQKHK 197
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRNGG 224
G LR++ MA RY +I +V +R + PN ++ E + E +
Sbjct: 198 GSLRHI-MA------------RYGLVTGEIMVVIVTRTAELPNKKRIIEDIIEAVPN--- 241
Query: 225 SRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRA 284
+ S+ N + NVI GN+ L GE ++ +G + +++ SF Q N
Sbjct: 242 -------VKSIVQNVNSKRTNVILGNQTSVLWGEEYIYDYIGDVKFAISAKSFYQVNPEQ 294
Query: 285 FDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTV 342
+L K +Y +V D Y G G I L L A+K + V VEI E+ +
Sbjct: 295 TKVLYDKALEYADLTGEETVIDAYCGIGTISLFL--AQKAKKVYGVEIVPEA-------I 345
Query: 343 SRLPKSVDGNISWHNADNSIEPL-----SWL---VGSDVLVVDPPRKGLDSSLVHAL 391
++ + N HNA+ ++ +W + +DV+VVDPPRKG D +L++ +
Sbjct: 346 EDAKRNAELN-GIHNAEFAVGEAEVVIPNWYKQGIKADVIVVDPPRKGCDEALLNTI 401
>gi|322372576|ref|ZP_08047112.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
C150]
gi|321277618|gb|EFX54687.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
C150]
Length = 451
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 86/363 (23%), Positives = 159/363 (43%), Gaps = 45/363 (12%)
Query: 65 HEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGLY 120
+ R +VD + +K+ G+ D T Y +R +A++ VR G Y
Sbjct: 90 EQLKFKRKQVVD---NLYKTAGISDVEVAETLGMETPYAYRNKAQVPVRRVKGQLETGFY 146
Query: 121 QEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNT 180
++ +H+++ I I+ + +R ++ +++PYDE ++TG +R++ + Y+
Sbjct: 147 RKNSHDLIPIEDFLIQDKEIDKLIVFVRDLLRRYDLKPYDEKEQTGLIRHLVVRRGHYSG 206
Query: 181 SLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQ 240
Q+ LV+ + K D++ + + N + S+ N
Sbjct: 207 -------------QMMLVFVTTRPKIFRIDQVIAKITEAFPN---------VVSIIQNIN 244
Query: 241 TSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGA 300
N IFG +R L G+ +++ G D ++ SF Q NT + L + + +
Sbjct: 245 DKNTNAIFGKEFRTLYGQDTITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDFSDLNS 304
Query: 301 S--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNA 358
V D Y+G G IGLS A++ + V VE+ + + +K R +G + H
Sbjct: 305 DSIVIDAYSGIGTIGLSF--AKQVKEVYGVEVIETAVEDAKKNAER-----NGITNAHYV 357
Query: 359 DNSIE--PLSWL---VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVK 413
+S E W + DV++VDPPRKGL S + A S+ K +S + ++M +
Sbjct: 358 ADSAENAMAKWSKDGIKPDVIIVDPPRKGLTESFIKA--SVAMQPEKITYVSCNPATMAR 415
Query: 414 EEK 416
+ K
Sbjct: 416 DIK 418
>gi|257884417|ref|ZP_05664070.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,231,501]
gi|257820255|gb|EEV47403.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,231,501]
Length = 457
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 135/311 (43%), Gaps = 58/311 (18%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+G+R +A++ VR G Y++ +H++V I P I+ A++++R ++ V
Sbjct: 129 FGYRNKAQIPVRRIDGQLATGFYKKNSHDLVPIEDFYIQDPVIDQAIKVVRDILQRFQVR 188
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLA 216
Y+E G LR++ + Y+ + +V +R EK S ++ E++
Sbjct: 189 GYNEKKNEGQLRHIIIRRGHYSHEM-------------MVVLVTRKEKFFKSKEIAEAIH 235
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
E L + SV N NVI G++ + L G + + G ++ S
Sbjct: 236 EELPE----------VVSVIQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKS 285
Query: 277 FGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q NT+ + L + K+ V D Y+G G IGLSL A K V +E+
Sbjct: 286 FYQVNTQQAEYLYQTAIKFAELDKKDIVIDAYSGIGTIGLSL--ADKVDKVYGMEV---- 339
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPP 379
+P++++ + ++ +N IE + + VG V+VVDPP
Sbjct: 340 ----------IPEAIE-DAQFNALNNKIENVYYEVGKAEKVMKKWQEKGIKPSVIVVDPP 388
Query: 380 RKGLDSSLVHA 390
RKGLD + +
Sbjct: 389 RKGLDHHFIES 399
>gi|56963072|ref|YP_174799.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Bacillus
clausii KSM-K16]
gi|56909311|dbj|BAD63838.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Bacillus
clausii KSM-K16]
Length = 471
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 89/354 (25%), Positives = 151/354 (42%), Gaps = 44/354 (12%)
Query: 54 CPHFQSCSGC-----THEFNLH-RPIIVDEA----TDFFKSIGLLDFTFDSCRLYGWRCR 103
CP ++ C GC +E L + IV +A T+ +S L T + +R +
Sbjct: 89 CPIYEECGGCQLQHMNYEATLEGKKDIVRQAFVRYTNVPESTLPLKNTIGMDNPWYYRNK 148
Query: 104 AKLAVRGTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
++L R + GLY+E +H+++D+ C H ++N ++++Q + +L + Y+E
Sbjct: 149 SQLQTRKQKDGRVAAGLYRENSHDLIDLSACMVQHKQLNRVAQIVKQLLGDLQIPIYNEK 208
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
+GD+R + + + T QI LV+ +R E P E L +
Sbjct: 209 THSGDIRTIVTRI-GFETK------------QIQLVFITRTEALPKK-------ELLIKQ 248
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
R + + SV N ++IFG + HL GE E +G L+ +F Q N
Sbjct: 249 --VREKLPEVTSVMQNVNHEKTSLIFGEKMVHLYGEKTIHERLGEYSFDLSARAFFQLNP 306
Query: 283 RAFDILLRKLQK--YVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
L + +K ++ + D Y G G IG L + V+ ++I +E + E
Sbjct: 307 SQTVKLYNEAKKAAHLTGKEKLVDAYCGVGTIGQWLGD--QAEEVRGMDITEE---AIEN 361
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
S K + PL WL DV++VDPPR G D L+ ++
Sbjct: 362 ARSNAKKHGIAAVYEVGPAEKWLPL-WLKQGFKPDVILVDPPRSGCDRQLLKSM 414
>gi|340399192|ref|YP_004728217.1| RNA methyltransferase yljE [Streptococcus salivarius CCHSS3]
gi|387761653|ref|YP_006068630.1| 23S rRNA-methyltransferase [Streptococcus salivarius 57.I]
gi|338743185|emb|CCB93693.1| uncharacterized RNA methyltransferase yljE [Streptococcus
salivarius CCHSS3]
gi|339292420|gb|AEJ53767.1| 23S rRNA-methyltransferase [Streptococcus salivarius 57.I]
Length = 456
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 86/363 (23%), Positives = 159/363 (43%), Gaps = 45/363 (12%)
Query: 65 HEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGLY 120
+ R +VD + +K+ G+ D T Y +R +A++ VR G Y
Sbjct: 90 EQLKFKRKQVVD---NLYKTAGISDVEIAETLGMETPYAYRNKAQVPVRRVKGQLETGFY 146
Query: 121 QEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNT 180
++ +H+++ I I+ + +R ++ +++PYDE ++TG +R++ + Y+
Sbjct: 147 RKNSHDLIPIEDFLIQDKEIDKLIVFVRDLLRRYDLKPYDEKEQTGLIRHLVVRRGHYSG 206
Query: 181 SLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQ 240
Q+ LV+ + K D++ + + N + S+ N
Sbjct: 207 -------------QMMLVFVTTRPKVFRIDQVIAKITEAFPN---------VVSIIQNIN 244
Query: 241 TSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGA 300
N IFG +R L G+ +++ G D ++ SF Q NT + L + + +
Sbjct: 245 DKNTNAIFGKEFRTLYGQDTITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDFSDLNS 304
Query: 301 S--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNA 358
V D Y+G G IGLS A++ + V VE+ + + +K R +G + H
Sbjct: 305 DSIVIDAYSGIGTIGLSF--AKQVKEVYGVEVIETAVEDAKKNAER-----NGITNAHYV 357
Query: 359 DNSIE--PLSWL---VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVK 413
+S E W + DV++VDPPRKGL S + A S+ K +S + ++M +
Sbjct: 358 ADSAENAMAKWSKDGIKPDVIIVDPPRKGLTESFIKA--SVAMQPEKITYVSCNPATMAR 415
Query: 414 EEK 416
+ K
Sbjct: 416 DIK 418
>gi|257898994|ref|ZP_05678647.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
Com15]
gi|257836906|gb|EEV61980.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
Com15]
Length = 460
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 79/361 (21%), Positives = 153/361 (42%), Gaps = 56/361 (15%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRC 102
CP + C GC + + + +++ +A + FK G + T + +R
Sbjct: 76 CPVYYECGGCQLQHLAYQAQLDFKKDLLL-QALEKFKPAGFRSYQLLPTIGMDDPWHYRN 134
Query: 103 RAKLAVRGTSTSPLI--GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYD 160
+A+ +R + GLY+ +H +V I C PR + + Q + + + YD
Sbjct: 135 KAQFQLRKNKQTQKAEAGLYEANSHQLVPITDCLVQEPRTQKVMNTVVQLLNKFDAPIYD 194
Query: 161 EDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLW 220
E +G R + + V + G++Q+ + +R++K P + +
Sbjct: 195 ERTNSGIFRTIMVRVGV-----------KTGELQVVFI--TRSKKFPQKNA-------MI 234
Query: 221 RNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQA 280
R R E + S+ N Q +++ G+ H+ G+ E + + L+P +F Q
Sbjct: 235 REINERLPE--VVSIMQNVQAQKTSLVMGDETIHVWGKEAIEEQINEVTFDLSPRAFFQL 292
Query: 281 NTRAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSF 338
N + ++L + K + ++ D Y G G IGLS+ A+K + V+ ++ ++
Sbjct: 293 NPQQTELLYGEGIKALDAQPDETIVDAYCGVGTIGLSV--AKKVKEVRGMDTVPQAIADA 350
Query: 339 EKTVSRLPKSVDGNISWHNADNSIEPL-----SWL---VGSDVLVVDPPRKGLDSSLVHA 390
++ RL +HN + WL D ++VDPPR GLD++L+ +
Sbjct: 351 KRNAERL--------GYHNTRYEVGTAEQVLPKWLNEGFQPDGIIVDPPRTGLDNALIQS 402
Query: 391 L 391
L
Sbjct: 403 L 403
>gi|307703903|ref|ZP_07640844.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
ATCC 35037]
gi|307622738|gb|EFO01734.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
ATCC 35037]
Length = 379
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 83/326 (25%), Positives = 152/326 (46%), Gaps = 42/326 (12%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ V LR ++ +++PY
Sbjct: 54 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFFIQDPMIDEVVVALRDLLRRYDLKPY 113
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E L
Sbjct: 114 DEKEQSGLIR-----------NLVVRRGHYSGQIMVILVTTR-----PKVFRVDQLIEQL 157
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D ++ +F Q
Sbjct: 158 IKQFPE------IVSVVQNINDQNTNAIFGKDWRTLYGQDYITDQMLGNDFQISGPAFYQ 211
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 212 VNTEMAEKLYQTAIDFAELKGDDVVIDAYSGIGTIGLSV--AKHVKEVYGVEVIPEAVEN 269
Query: 338 FEKTVSRLPKSVDGNISWH----NADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHA 390
+K S++G + H A+N+++ +WL + ++VDPPRKGL S + A
Sbjct: 270 SQKNA-----SINGITNAHYVCDTAENAMK--NWLKEGIQPTAILVDPPRKGLTESFIKA 322
Query: 391 LQSIGSAERKAKSLSESSSSMVKEEK 416
G A+R A +S + ++M ++ K
Sbjct: 323 GSQTG-ADRIA-YISCNVATMARDIK 346
>gi|418155063|ref|ZP_12791794.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA16242]
gi|353823355|gb|EHE03530.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA16242]
Length = 451
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 139/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFFIQDPVIDELVVALRDLLRRYDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P ++E L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVILVTTR-----PKVFRVEQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDFITDQMLGNDYQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTTIDFAELKEDDVVIDAYSGIGTIGLSV--AKHVKEVYGVEVIPEA-VE 340
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
K ++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 341 NSKKNAQLNHISNTHYVCDTAENAMK--NWLKEGIQPTVILVDPPRKGLTESFIKASSQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|352517636|ref|YP_004886953.1| putative RNA methyltransferase [Tetragenococcus halophilus NBRC
12172]
gi|348601743|dbj|BAK94789.1| putative RNA methyltransferase [Tetragenococcus halophilus NBRC
12172]
Length = 457
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 141/301 (46%), Gaps = 42/301 (13%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+G+R +A++ +R G Y++ +H ++ I H P I+AA+ ++R+ +++ V+
Sbjct: 128 FGYRNKAQIPIRKIDGILQTGFYRKNSHELIPIDHFFIQDPAIDAAIIVIREILQQFEVK 187
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLA 216
Y+E + +G LR++ + Y ++ + LV +R E +K+ +++
Sbjct: 188 AYNEKNNSGFLRHIVI-----------RRGYHTHEMMVVLV--TRKEHFFQGEKIAQAIQ 234
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
E L + S+ N NVI G + + LLG + ++ + G ++ S
Sbjct: 235 EKLPE----------VVSIIQNINPKQTNVILGEQEKVLLGRSYVYDQLLGKTYRISAKS 284
Query: 277 FGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSL----AAARKCRSVK--CV 328
F Q NT ++L +K + S V D Y+G G IGLSL A ++K +
Sbjct: 285 FYQVNTPQAEVLYQKAFELADLKKSDVVIDAYSGIGTIGLSLANQVAHVYGMETIKQAVI 344
Query: 329 EINKESQLSFEKTVSRLP-KSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSL 387
+ + ++L+ K + K+ D W ++ I P +V+ VDPPRKGLD S
Sbjct: 345 DAQENAKLNGIKNAEYVTGKAEDIMPRW--KEDGIHP-------NVIFVDPPRKGLDQSF 395
Query: 388 V 388
+
Sbjct: 396 I 396
>gi|56418877|ref|YP_146195.1| RNA methyltransferase [Geobacillus kaustophilus HTA426]
gi|56378719|dbj|BAD74627.1| RNA methyltransferase [Geobacillus kaustophilus HTA426]
Length = 457
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 92/370 (24%), Positives = 157/370 (42%), Gaps = 72/370 (19%)
Query: 54 CPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRCR 103
CP ++ C GC ++E L + + IG LD + +R +
Sbjct: 78 CPVYRQCGGCQLQHLSYEGQLKAK--EKQVKEVLARIGKLDGVTVHPVIGMKNPWRYRNK 135
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A++ V + G Y+E +H ++D+ C + + V+ +++ ++ + YDE
Sbjct: 136 AQVPVGEREGGLVAGFYKERSHEIIDMDACLIQQEKNDDVVQAVKRIVERYGIPSYDELA 195
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNG 223
G LR++ V Y + G+V + LV +R P+ ++
Sbjct: 196 HRGVLRHI---VARYGAA--------TGEVMVVLV--TRTNHLPHEQEIVR--------- 233
Query: 224 GSRSREH-YIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
S RE + S+ N NVIFG + R L G + +GGI +++ SF Q N
Sbjct: 234 -SIVREIPDVKSIVQNVNPERTNVIFGAKTRVLWGSEFITDRIGGIQFAISARSFYQVNP 292
Query: 283 RAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+L K +Y +V D Y G G I L L ARK + V VEI
Sbjct: 293 EQTKVLYDKALEYAELTGRETVIDAYCGIGTISLFL--ARKAKHVYGVEI---------- 340
Query: 341 TVSRLPKSVDGNISWHNAD-NSIEPLSWLVG---------------SDVLVVDPPRKGLD 384
+P++++ + NA+ N I+ +++ VG +D LVVDPPRKG D
Sbjct: 341 ----VPEAIED--AKRNAELNGIQNVTFEVGAAEDVIPRWYEEGVRADCLVVDPPRKGCD 394
Query: 385 SSLVHALQSI 394
++L+ + ++
Sbjct: 395 AALLETIIAM 404
>gi|365902578|ref|ZP_09440401.1| RNA methyltransferase, TrmA family protein [Lactobacillus
malefermentans KCTC 3548]
Length = 455
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 147/333 (44%), Gaps = 65/333 (19%)
Query: 76 DEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKA 135
D D +IG+ D T +R +A++ VR + G Y++ +H++V I
Sbjct: 112 DLNIDVLPTIGMDDPTH-------YRNKAQVPVRMVNGQLETGFYRQHSHDLVPIEDYYI 164
Query: 136 HHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQI 195
P+I+ A+ ++R +++ ++EP++E TG +R +L Y + + I
Sbjct: 165 QDPKIDEAIVVVRDLLRKYHIEPFNEASHTGVVR-----------NLMIRRGYYSNETMI 213
Query: 196 TLVWNSRNEKSPNSDKL--ESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWR 253
+ +R +K P D+L E A+ + S+ N + NVI G + +
Sbjct: 214 CFI--TRTQKLPMVDELVKEITAQL-----------PEVTSIVQNINQAKTNVIMGKKNK 260
Query: 254 HLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGV 311
L G+ + + G+ +++P+SF Q N + L + + V +V D Y G G
Sbjct: 261 VLFGKETISDKLLGLTFAISPTSFYQVNPVQTEKLYKLAIEQVGLSGKETVIDAYCGIGT 320
Query: 312 IGLSLAAARKCRSVKCVEI--------------NKESQLSFEKTVSRLPKSVDGNISWHN 357
I SLA A + V VEI N + + FE + K+ D W
Sbjct: 321 I--SLAMAEHAKQVYGVEIVADAIEDAKVNAQKNHLNNIQFE-----VGKAEDKMAEWQQ 373
Query: 358 ADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHA 390
A ++P DV+VVDPPRKGL +SL+ +
Sbjct: 374 A--GLKP-------DVIVVDPPRKGLAASLIES 397
>gi|322517118|ref|ZP_08070002.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus vestibularis
ATCC 49124]
gi|322124268|gb|EFX95779.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus vestibularis
ATCC 49124]
Length = 452
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 88/368 (23%), Positives = 160/368 (43%), Gaps = 53/368 (14%)
Query: 65 HEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGLY 120
+ R +VD + +K+ G+ D T Y +R +A++ VR G Y
Sbjct: 90 EQLKFKRKQVVD---NLYKTAGISDVEVAETLGMDTPYAYRNKAQVPVRRVKGQLETGFY 146
Query: 121 QEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNT 180
++ +H+++ I I+ + +R ++ +++PYDE ++TG +R++ + Y+
Sbjct: 147 RKNSHDLIPIEDFLIQDKEIDKLIVFVRDLLRRYDLKPYDEKEQTGLIRHLVVRRGHYSG 206
Query: 181 SLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHY--IHSVWAN 238
Q+ LV+ + K D++ ++ E + + S+ N
Sbjct: 207 -------------QMMLVFVTTRPKVFRIDQI-----------IAKITEAFPSVVSIIQN 242
Query: 239 FQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPY 298
N IFG +R L G+ +++ G D ++ SF Q NT + L + +
Sbjct: 243 INDKNTNAIFGKEFRTLYGQDTITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDFSDL 302
Query: 299 GAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVD--GNIS 354
+ V D Y+G G IGLS A++ + V VE+ E V K+ + G +
Sbjct: 303 NSDSIVIDAYSGIGTIGLSF--AKQVKEVYGVEV-------IETAVEDAKKNAECNGITN 353
Query: 355 WHNADNSIE--PLSWL---VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSS 409
H +S E W + DV++VDPPRKGL S + A S+ K +S + +
Sbjct: 354 AHYVADSAENAMAKWSKDGIKPDVIIVDPPRKGLTESFIKA--SVAMQPEKITYVSCNPA 411
Query: 410 SMVKEEKR 417
+M ++ KR
Sbjct: 412 TMARDIKR 419
>gi|254557749|ref|YP_003064166.1| RNA methyltransferase [Lactobacillus plantarum JDM1]
gi|254046676|gb|ACT63469.1| RNA methyltransferase [Lactobacillus plantarum JDM1]
Length = 481
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 148/328 (45%), Gaps = 46/328 (14%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGI---KEL 154
Y +R +A+ VR GLY+E +H++VD+P C P A + ++RQ + +EL
Sbjct: 154 YEYRNKAQFQVRLIDGHVAAGLYKENSHDLVDLPTCSVQMP---ATMTVMRQVVAWLEEL 210
Query: 155 NVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDK-LE 213
V YDE+ +G ++ ++ E G++Q+ + N+ K P + L
Sbjct: 211 QVPIYDEEHNSGIVK-----------TIVVREAAATGEIQLVFITNT--PKLPKKHQLLM 257
Query: 214 SLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLA 273
+AE L + SV N ++I+G++ L G+ E + G+ L+
Sbjct: 258 KIAEKL----------PMVVSVMQNINAGKTSLIWGDQTTSLAGKPTITEELDGLVFDLS 307
Query: 274 PSSFGQAN---TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLA-AARKCRSVKCVE 329
+F Q N T+ L R+ P ++ D Y+G G IGLSLA A++ R + +
Sbjct: 308 ARAFFQLNPQQTKKLYRLAREALNLAP-NETLVDAYSGVGTIGLSLADVAKEVRGMDTIP 366
Query: 330 INKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSS 386
+ + ++ N + + + WL D +VVDPPR GLD+
Sbjct: 367 AAVADANANAQ------RNQITNAHYEVGEAEVLLPQWLASGFAPDAMVVDPPRTGLDNV 420
Query: 387 LVHALQSIGSAERKAKSLSESSSSMVKE 414
L+ A+ + SA K +S + S++ ++
Sbjct: 421 LIDAI--LQSAPEKLVYISCNPSTLAQD 446
>gi|312863381|ref|ZP_07723619.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
vestibularis F0396]
gi|311100917|gb|EFQ59122.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
vestibularis F0396]
Length = 453
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 84/363 (23%), Positives = 160/363 (44%), Gaps = 45/363 (12%)
Query: 65 HEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGLY 120
+ R +VD + +K+ G+ D T Y +R +A++ VR G Y
Sbjct: 90 EQLKFKRKQVVD---NLYKTAGISDVEVAETLGMDTPYAYRNKAQVPVRRVKGQLETGFY 146
Query: 121 QEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNT 180
++ +H+++ I I+ + +R ++ +++PYDE ++TG +R++ + Y+
Sbjct: 147 RKNSHDLIPIEDFLIQDKEIDKLIVFVRDLLRRYDLKPYDEKEQTGLIRHLVVRRGHYSG 206
Query: 181 SLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQ 240
Q+ LV+ + K D++ ++ + + + S+ N
Sbjct: 207 -------------QMMLVFVTTRPKVFRIDQVIAMITEAFPS---------VVSIIQNIN 244
Query: 241 TSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGA 300
N IFG +R L G+ +++ G D ++ SF Q NT + L + + +
Sbjct: 245 DKNTNAIFGKEFRTLYGQDTITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDFSDLNS 304
Query: 301 S--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNA 358
V D Y+G G IGLS A++ + V VE+ + + +K R +G + H
Sbjct: 305 DSIVIDAYSGIGTIGLSF--AKQVKEVYGVEVIETAVEDAKKNAER-----NGITNAHYV 357
Query: 359 DNSIE--PLSWL---VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVK 413
+S E W + D+++VDPPRKGL S + A S+ K +S + ++M +
Sbjct: 358 ADSAENAMAKWSKDGIKPDIIIVDPPRKGLTESFIKA--SVAMQPEKITYVSCNPATMAR 415
Query: 414 EEK 416
+ K
Sbjct: 416 DIK 418
>gi|456014429|gb|EMF48036.1| RNA methyltransferase, TrmA family [Planococcus halocryophilus Or1]
Length = 453
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 89/353 (25%), Positives = 147/353 (41%), Gaps = 44/353 (12%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYG--WRCRA 104
CP F +C GC + + ++ D T K L D + WR R
Sbjct: 74 CPVFDTCGGCQIQHLSYEGQMTFKQKLVRDAITRIGK---LPDVPVHPVKGMEDPWRYRN 130
Query: 105 KLAV-RGTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
K + GT ++ G YQ +H++ D C P +A + L++ + ++ +EPY+E
Sbjct: 131 KSQIPFGTQNGKVVAGFYQPRSHDIADTDTCLIQTPEADAIMVALKKNLIDMGIEPYEEA 190
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
G LR+V + R +I +V ++ +K P + + L +
Sbjct: 191 THRGMLRHVVV-------------RKARATGEIMVVLVTKKKKFPQAQRAIELIQ----- 232
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ + S+ N NVIFG+ L G+ + +G + ++ SF Q N
Sbjct: 233 ----ATVPEVTSIVQNINPEKTNVIFGDETLTLWGKDVIEDRIGDVRFEISARSFYQINP 288
Query: 283 RAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
++L + Y +V D Y G G I L L A++ + V VEI ++ + K
Sbjct: 289 VQTEVLYGQALAYAQLTGEETVIDAYCGIGTISLFL--AQRAKFVMGVEIVPQA-IEDAK 345
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I P + G +DVLVVDPPRKG D L+H +
Sbjct: 346 RNAELNGLTNTLFEAGPAEQVI-PRWYKEGKKADVLVVDPPRKGCDEQLLHTI 397
>gi|330832578|ref|YP_004401403.1| RNA methyltransferase, TrmA family [Streptococcus suis ST3]
gi|329306801|gb|AEB81217.1| RNA methyltransferase, TrmA family [Streptococcus suis ST3]
Length = 452
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 144/303 (47%), Gaps = 36/303 (11%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A + VR + G +++ +H++ I H I+A V R +++L+++P
Sbjct: 125 AYRNKAAVPVRRVNGQLETGFFRKNSHDLFPIEDFYIQHKEIDALVLATRDLLRKLDLKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R + + Y +G++ + LV P ++E+L E
Sbjct: 185 YDEKEQTGLVRNIVVRRGHY-----------SGQLMLVLVTT-----RPKIFRVETLIER 228
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
L S+ + S+ N N IFG + L G + + G + ++ SF
Sbjct: 229 L------TSQFPNLVSIVQNINDQNTNAIFGQEFHLLHGSETIADTMLGNEFEISAPSFY 282
Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q NT + L + + A V D Y+G G IGLS A++ + V VE+ +++ L
Sbjct: 283 QVNTEMAEKLYQTAIDFAELSADDVVIDAYSGIGTIGLSF--AKQVKHVYGVEVVEKAVL 340
Query: 337 SFEKTVSRLPKSVDGNISW--HNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+K +R +D N+++ +A+++++ W+ V V+ VDPPRKGL S + A
Sbjct: 341 DSQKNAAR--NGID-NVTYVCDSAESAMQ--KWVADGVKPTVIFVDPPRKGLTESFIKAS 395
Query: 392 QSI 394
S+
Sbjct: 396 TSV 398
>gi|418018183|ref|ZP_12657739.1| RNA methyltransferase yljE [Streptococcus salivarius M18]
gi|345527032|gb|EGX30343.1| RNA methyltransferase yljE [Streptococcus salivarius M18]
Length = 452
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 84/363 (23%), Positives = 160/363 (44%), Gaps = 45/363 (12%)
Query: 65 HEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGLY 120
+ R +VD + +K+ G+ D T Y +R +A++ VR G Y
Sbjct: 90 EQLKFKRKQVVD---NLYKTAGISDVEVAETLGMDTPYAYRNKAQVPVRRVKGQLETGFY 146
Query: 121 QEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNT 180
++ +H+++ I I+ + +R ++ +++PYDE ++TG +R++ + Y+
Sbjct: 147 RKNSHDLIPIEDFLIQDKEIDKLIVFVRDLLRRYDLKPYDEKEQTGLIRHLVVRRGHYSG 206
Query: 181 SLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQ 240
Q+ LV+ + K D++ ++ + + + S+ N
Sbjct: 207 -------------QMMLVFVTTRPKVFRIDQVIAMITEAFPS---------VVSIIQNIN 244
Query: 241 TSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGA 300
N IFG +R L G+ +++ G D ++ SF Q NT + L + + +
Sbjct: 245 DKNTNAIFGKEFRTLYGQDTITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDFSDLNS 304
Query: 301 S--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNA 358
V D Y+G G IGLS A++ + V VE+ + + +K R +G + H
Sbjct: 305 DSIVIDAYSGIGTIGLSF--AKQVKEVYGVEVIETAVEDAKKNAER-----NGITNAHYV 357
Query: 359 DNSIE--PLSWL---VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVK 413
+S E W + D+++VDPPRKGL S + A S+ K +S + ++M +
Sbjct: 358 ADSAENAMAKWSKDGIKPDIIIVDPPRKGLTESFIKA--SVAMQPEKITYVSCNPATMAR 415
Query: 414 EEK 416
+ K
Sbjct: 416 DIK 418
>gi|442805392|ref|YP_007373541.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
stercorarium subsp. stercorarium DSM 8532]
gi|442741242|gb|AGC68931.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
stercorarium subsp. stercorarium DSM 8532]
Length = 454
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 91/355 (25%), Positives = 148/355 (41%), Gaps = 48/355 (13%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYG------WRCRA 104
CP ++ C GC+ + +N+ TD + IG + + G +R +A
Sbjct: 71 CPVYKRCGGCSLQHMSYNMQLKFKHRVVTDNLERIGGF-WGIQVSPVIGMDNPMNYRNKA 129
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+ V P+ G Y +H ++D C HP + + +KEL + Y+E
Sbjct: 130 QYPVGMGDNGPVAGFYARRSHIIIDSERCGIQHPASEKVKNTVLEAVKELKIPVYNEITG 189
Query: 165 TGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGG 224
G LR++ V+ Y G V + LV +EK P L+ + + + R
Sbjct: 190 EGILRHIVTRVS-----------YSTGDVMVILVVT--DEKVPG---LKKIIQKITREIP 233
Query: 225 SRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRA 284
+ S+ N +NVI G++ R + G + +G + ++P SF Q N
Sbjct: 234 E------VISIVLNINKRRDNVILGDKVRTVYGSDTLVDRLGHLKFHISPLSFYQVNPVQ 287
Query: 285 FDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTV 342
L K ++ +V DLY G G I L L A K + V VE+ E+ + K
Sbjct: 288 TVKLYNKAVEFAGLTGNETVFDLYCGIGTISLFL--AEKAKEVIGVEVVPEAVEAATKN- 344
Query: 343 SRLPKSVDGNIS----WHNADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHAL 391
+V NIS + + P + G +DV+VVDPPRKG D +L+ +
Sbjct: 345 -----AVLNNISNARFYCGEAEKVVPELYNEGIRADVVVVDPPRKGCDEALLQTV 394
>gi|295702483|ref|YP_003595558.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium
DSM 319]
gi|294800142|gb|ADF37208.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium
DSM 319]
Length = 457
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 85/357 (23%), Positives = 150/357 (42%), Gaps = 52/357 (14%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLL-----DFTFDSCRLYGWRCRAK 105
CP ++ C GC + + + D IG L T + +R +A+
Sbjct: 78 CPVYKQCGGCQLQHVSYEGQLQFKQKQVKDVMARIGHLPDVPVHSTLGMNDPWRYRNKAQ 137
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
+ V + G YQ+ +H+++++ C + V+ ++ ++ V Y E
Sbjct: 138 VPVAEREGGLVAGFYQQRSHDIINMDACLIQQQANDDVVQAVKSICEKHGVSAYQEQKHK 197
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRNGG 224
G LR++ MA RY +I +V +R + PN ++ E + E +
Sbjct: 198 GSLRHI-MA------------RYGLVTGEIMVVIVTRTAELPNKKRIIEDIIEAVPN--- 241
Query: 225 SRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRA 284
+ S+ N + NVI GN+ L GE ++ +G + +++ SF Q N
Sbjct: 242 -------VKSIVQNVNSKRTNVILGNQTNVLWGEEYIYDYIGDVKFAISAKSFYQVNPEQ 294
Query: 285 FDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTV 342
+L K +Y +V D Y G G I L L A+K + V VEI E+ +
Sbjct: 295 TKVLYDKALEYADLTGEETVIDAYCGIGTISLFL--AQKAKKVYGVEIVPEA-------I 345
Query: 343 SRLPKSVDGNISWHNADNSIEPLSWL--------VGSDVLVVDPPRKGLDSSLVHAL 391
++ + N HNA+ + + + +DV+VVDPPRKG D +L++ +
Sbjct: 346 EDAKRNAELN-GIHNAEFEVGEAEVVIPNWYKQGIKADVIVVDPPRKGCDEALLNTI 401
>gi|392949995|ref|ZP_10315559.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus pentosus KCA1]
gi|392434782|gb|EIW12742.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus pentosus KCA1]
Length = 481
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 85/328 (25%), Positives = 146/328 (44%), Gaps = 46/328 (14%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGI---KEL 154
Y +R +A+ VR GLY+E +H++VD+P C P A + ++RQ + +EL
Sbjct: 154 YAYRNKAQFQVRMIDGHVAAGLYKENSHDLVDLPTCSVQMP---ATMTVMRQVVAWLEEL 210
Query: 155 NVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDK-LE 213
V YDE +G ++ +L E G+VQ+ + N+ K P + L
Sbjct: 211 EVPIYDEAHNSGIVK-----------TLVVREAAATGEVQLVFITNT--PKLPKKHQLLM 257
Query: 214 SLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLA 273
+AE L + SV N ++++G++ L G+ E + G+ L+
Sbjct: 258 KIAEKL----------PMVVSVMQNVNAGKTSLVWGDQTTLLAGKPTITEELDGLVFDLS 307
Query: 274 PSSFGQAN---TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLA-AARKCRSVKCVE 329
+F Q N T+ L R+ P ++ D Y+G G IGLSLA A++ R + +
Sbjct: 308 ARAFFQLNPQQTKKLYRLAREALDLAP-NETLVDAYSGVGTIGLSLADVAKEVRGMDTIP 366
Query: 330 INKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSS 386
+ + ++ N + + + WL D +VVDPPR GLD
Sbjct: 367 AAVADANANAQ------RNEITNAHYEVGEAEVLLPQWLASGFAPDAMVVDPPRTGLDGV 420
Query: 387 LVHALQSIGSAERKAKSLSESSSSMVKE 414
L+ A+ + SA K +S + S++ ++
Sbjct: 421 LIDAI--LQSAPEKLVYISCNPSTLARD 446
>gi|194466906|ref|ZP_03072893.1| RNA methyltransferase, TrmA family [Lactobacillus reuteri 100-23]
gi|194453942|gb|EDX42839.1| RNA methyltransferase, TrmA family [Lactobacillus reuteri 100-23]
Length = 456
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 84/341 (24%), Positives = 150/341 (43%), Gaps = 66/341 (19%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
Y +R +A++ V+ G Y+ G+HN+V I P I+ A+ ++R +++ ++
Sbjct: 128 YHYRNKAQVPVKMVRGQLETGFYKRGSHNLVPIEDFYIQDPEIDKAIVVVRDLLRQYHIT 187
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRN---EKSPNSDKLES 214
PYDE G +R V + Y + ++ + LV N++ EK +
Sbjct: 188 PYDEQTGKGVIRTVMV-----------RRGYYSHEMMVVLVTNTKRLPMEKQIVDGIVAG 236
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
+ E + S+ N N + G++ + L G + + + GID +++P
Sbjct: 237 VPE--------------VKSIVQNINDKRTNRLLGDKNKTLWGADEIHDQLLGIDFAISP 282
Query: 275 SSFGQANTRAFDILLRKL--QKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
SF Q N + + L + + +V D Y G G I SLA A+ + V VEI
Sbjct: 283 LSFYQVNPQQTERLYQTAIDNAGLDGNQTVIDAYCGIGTI--SLAVAKHAKQVYGVEI-- 338
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNAD-NSIEPLSWLVGS---------------DVLVV 376
+P +++ + HNA N I+ ++VG DV++V
Sbjct: 339 ------------VPAAIED--AKHNAKRNGIKNAKFVVGKAEEQFAKWQAEGLKPDVVIV 384
Query: 377 DPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKR 417
DPPRKGL SL+ A + +K +S + +++V++ KR
Sbjct: 385 DPPRKGLAESLIEATGKMDP--KKVIYVSCNPATLVRDIKR 423
>gi|259047667|ref|ZP_05738068.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Granulicatella
adiacens ATCC 49175]
gi|259035858|gb|EEW37113.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Granulicatella
adiacens ATCC 49175]
Length = 467
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 138/301 (45%), Gaps = 40/301 (13%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR G +++ +H+++ + + P I+ + +R +++ V
Sbjct: 140 GYRNKAQIPVRTVDGLLTTGFFKKNSHDLIPMENFHIQDPEIDRLIVAVRDILRKYPVVA 199
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNG--KVQITLVWNSRNEKSPNSDKLESLA 216
YDE + TGDL+++ + R G Q+ +++ +R + P A
Sbjct: 200 YDEANHTGDLKHIIV---------------RRGLRTKQVMIIFVTRTKGLPQ-------A 237
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
E + R+ + E + S+ N Q NVI G + L GE + E + ++ S
Sbjct: 238 EAIVRDITAAHPE--VVSIVQNIQPKPTNVIMGRETKVLFGEDVYEEKLFEFTFKISARS 295
Query: 277 FGQANTRAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q NT ++L ++ G +V D Y G G +SLA AR + V +EI ++
Sbjct: 296 FFQVNTVQTEVLYQQAIDAADLKGGETVVDAYCGIGT--MSLAFARDAKKVYAMEIVDDA 353
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWL---VGSDVLVVDPPRKGLDSSLVH 389
+ +++ ++G + H + E + W + DV+VVDPPRKGLD + +
Sbjct: 354 IV-----MAKENAKLNGVTNVHFETGAAEKIMPRWKEEGIQPDVIVVDPPRKGLDLAFIE 408
Query: 390 A 390
A
Sbjct: 409 A 409
>gi|227550544|ref|ZP_03980593.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecium TX1330]
gi|257897054|ref|ZP_05676707.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
Com12]
gi|293378745|ref|ZP_06624903.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
PC4.1]
gi|227180445|gb|EEI61417.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecium TX1330]
gi|257833619|gb|EEV60040.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
Com12]
gi|292642673|gb|EFF60825.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
PC4.1]
Length = 460
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 79/361 (21%), Positives = 154/361 (42%), Gaps = 56/361 (15%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRC 102
CP + C GC + + + +++ +A + FK G + T + +R
Sbjct: 76 CPVYYECGGCQLQHLAYQAQLDFKKDLLL-QALEKFKPAGFRSYQLLPTIGMDDPWHYRN 134
Query: 103 RAKLAVRGTSTSPLI--GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYD 160
+A+ +R + GLY+ +H +V I C PR + + Q + + + YD
Sbjct: 135 KAQFQLRKNKQTQKTEAGLYEANSHQLVPITDCLVQEPRTQKVMNTVVQLLNKFDAPIYD 194
Query: 161 EDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLW 220
E +G R + + + + G++Q+ V+ +R++K P + +
Sbjct: 195 ERTNSGIFRTIMVRIGV-----------KTGELQV--VFITRSKKFPQKNA-------MI 234
Query: 221 RNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQA 280
R R E + S+ N Q +++ G+ H+ G+ E + + L+P +F Q
Sbjct: 235 REINERLPE--VVSIMQNVQAQKTSLVMGDETIHVWGKEAIEEQINEVTFDLSPRAFFQL 292
Query: 281 NTRAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSF 338
N + ++L + K + ++ D Y G G IGLS+ A+K + V+ ++ ++
Sbjct: 293 NPQQTELLYGEGIKALDAQPDETIVDAYCGVGTIGLSV--AKKVKEVRGMDTVPQAIADA 350
Query: 339 EKTVSRLPKSVDGNISWHNADNSIEPL-----SWL---VGSDVLVVDPPRKGLDSSLVHA 390
++ RL +HN + WL D ++VDPPR GLD++L+ +
Sbjct: 351 KRNAERL--------GYHNTRYEVGTAEQVLPKWLNEGFQPDGIIVDPPRTGLDNALIQS 402
Query: 391 L 391
L
Sbjct: 403 L 403
>gi|421289654|ref|ZP_15740405.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA54354]
gi|421304972|ref|ZP_15755628.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA62331]
gi|395888895|gb|EJG99905.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA54354]
gi|395905634|gb|EJH16539.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA62331]
Length = 543
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 75/302 (24%), Positives = 138/302 (45%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +HN++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + + ++ + LV P +++ L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSEQIMVVLVTTR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + + D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKKDDVIIDAYSGIGTIGLSV--AKHVKEVYGVELIPEA-VE 340
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
K ++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 341 NSKKNAQLNNISNAHYVCDTAENAMK--NWLKDGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|331266416|ref|YP_004326046.1| SAM-dependent methyltransferase [Streptococcus oralis Uo5]
gi|326683088|emb|CBZ00705.1| SAM-dependent methyltransferase related to tRNA
(uracil-5-)-methyltransferase [Streptococcus oralis Uo5]
Length = 452
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 139/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFFIQDPVIDQVVVALRDLLRRYDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P ++E L E L
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVILVTTR-----PKIFRVEQLIEQL 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG W+ L G+ + + G D ++ +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWKTLYGQDYITDQMLGNDFQISGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELREDDVVIDAYSGIGTIGLSV--AKHVKEVYGVEVIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K + L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 342 SQKN-AELNGISNAHYVCDTAENAMK--NWLKEGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|262282939|ref|ZP_06060706.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
2_1_36FAA]
gi|262261191|gb|EEY79890.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
2_1_36FAA]
Length = 480
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 142/306 (46%), Gaps = 40/306 (13%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ V LR ++ +++PY
Sbjct: 150 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPY 209
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P ++E L + +
Sbjct: 210 DEKEQSGLIR-----------NLVVRRGHYSGQIMVILVTTR-----PKVFRVEQLIDQV 253
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 254 IKQFPE------IVSVIQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQ 307
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT+ + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 308 VNTQMAEKLYQTAIDFAGLKVDDVVVDAYSGIGTIGLSV--AKHVKEVYGVEVIPEAVEN 365
Query: 338 FEKTVSRLPKSVDGNISWH----NADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHA 390
+K +++G + H A+N+++ +WL + +++VDPPRKGL S + A
Sbjct: 366 SKKNA-----AINGITNSHYVCDTAENAMK--NWLKEGIQPSLILVDPPRKGLTESFIKA 418
Query: 391 LQSIGS 396
G+
Sbjct: 419 SAQTGA 424
>gi|417886523|ref|ZP_12530667.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus oris
F0423]
gi|341592914|gb|EGS35771.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus oris
F0423]
Length = 456
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 154/345 (44%), Gaps = 60/345 (17%)
Query: 91 TFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQG 150
T R Y +R +A++ V+ G Y+ G+H +V I P+I+ A+ ++R
Sbjct: 121 TMGMERPYHYRNKAQVPVKLVRGKLETGFYKRGSHTLVPIEDFYIQDPKIDEAIVVVRDL 180
Query: 151 IKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSD 210
+++ +V PYDE G +R V + Y + +V + LV N++ + P +
Sbjct: 181 LRKYHVTPYDERTGKGVIRTVMV-----------RRGYYSHEVMVVLVTNTK--RLPMEE 227
Query: 211 KLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDI 270
++ G + + S+ N N + G+ + L G+ + + + GID
Sbjct: 228 QIVD---------GIVAGVPEVKSIVQNINDKRTNKLLGDTNKTLWGKDEIHDQLLGIDF 278
Query: 271 SLAPSSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCV 328
+++P SF Q N + + L + S V D Y G G I SLA A+ + V V
Sbjct: 279 AISPLSFYQVNPQQTERLYQTAIDNAGLDGSQTVIDAYCGIGTI--SLAVAKHAKQVYGV 336
Query: 329 EINKESQLSFEKTVSRLPKSVDGNISWHNAD-NSIEPLSWLVGS---------------D 372
EI +P +++ + HNA N I+ ++VG D
Sbjct: 337 EI--------------VPAAIED--AKHNAKRNGIKNAEFVVGKAEEQFAKWQAAGLKPD 380
Query: 373 VLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKR 417
V++VDPPRKGL SL+ A + A +K +S + +++V++ +R
Sbjct: 381 VVIVDPPRKGLAESLIEATGKM--APQKVIYVSCNPATLVRDIQR 423
>gi|409095230|ref|ZP_11215254.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus zilligii AN1]
Length = 434
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 88/360 (24%), Positives = 155/360 (43%), Gaps = 57/360 (15%)
Query: 36 LPLDPPAANLPSLTCALQCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSC 95
L LD L +CPHF +C GC + ++ + +A F + G+ S
Sbjct: 49 LALDFELIEGSPLRQGARCPHFGTCGGCLWQGLKYKEQLRLKAELFERIAGIKAEIRGSP 108
Query: 96 RLYGWRCRAKLAVRGTSTSPLIGLYQEGT-HNVVDIPHCKAHHPRINAAVELLRQGIKEL 154
+++G+R + V G T GL + G VV++ C R + LR+ ++E
Sbjct: 109 KIWGFRNLSNFIVTGGGT----GLKEYGNPLGVVNLRECPVFSKRTMEYLRSLREFLEET 164
Query: 155 NVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLES 214
++P+D ++GD+ Y+Q+ R GK ++ N P+ + LE+
Sbjct: 165 RLKPWDLSGKSGDIHYLQV---------------REGKFTGEVMVNLIAHLKPSEEVLEA 209
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
R + S++ + + T + G + GE E +G + + P
Sbjct: 210 F----------RGHFSFADSLYWSLKRDTRDDPQGEA-ELVAGEPYLREKIGDVIYLIHP 258
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEI---- 330
+SF Q N+ A +LLR ++ + G V DLY+G G G+ L ARK V+ +E+
Sbjct: 259 NSFFQTNSYALPLLLRAVEGFTD-GERVLDLYSGVGTFGVWL--ARKGFGVEGLELNPFA 315
Query: 331 ----NKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSS 386
N+ ++L+ V R+ K+ + + + D ++VDPPRKGL +
Sbjct: 316 VGMANRNAELNGVDAVFRVGKAEETPVGDY---------------DTVIVDPPRKGLKEA 360
>gi|88808527|ref|ZP_01124037.1| 23S rRNA methyltransferase/RumA [Synechococcus sp. WH 7805]
gi|88787515|gb|EAR18672.1| 23S rRNA methyltransferase/RumA [Synechococcus sp. WH 7805]
Length = 466
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 84/308 (27%), Positives = 147/308 (47%), Gaps = 40/308 (12%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
G+R RA + ++ +G Y+ G+H +V++ HC PR++A +E ++ + L
Sbjct: 130 LGYRNRALIPIQRGEGGLRLGYYRRGSHRIVNLNHCPVLDPRLDALIEPIKNDLA-LTDW 188
Query: 158 PYDEDDRTG-DLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLA 216
P D D R LR++ + + R G++ I+LV + + P D+L A
Sbjct: 189 PMDSDLRGEPGLRHLGLRIGV-----------RTGQILISLV--AATDHLPGLDRLT--A 233
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
E++ R + V N Q +N + G + + G+ EN G+ + L ++
Sbjct: 234 EWM-------QRWPQLKGVTLNVQPKRSNTVIGEQTLCIQGDDVIEENFCGLSLQLGTTT 286
Query: 277 FGQANTRAFDILLRKLQKYVPY---GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
F Q NT + ++ + ++ A+V D Y G G I L LAA+ +V +EIN++
Sbjct: 287 FFQVNTTRAEQVVTMICDWIHASAPSANVIDAYCGIGTIALPLAAS--GLNVVGLEINRD 344
Query: 334 SQLSFEKTVSR--LPKS--VDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVH 389
S + ++ R L K +DG+++ H +E L L LVVDPPRKGL +++
Sbjct: 345 SVIQAQENAQRNGLEKVCFLDGDVAEH-----LEQL--LPHHQALVVDPPRKGLAPAVLQ 397
Query: 390 ALQSIGSA 397
+ +I A
Sbjct: 398 MILAIPPA 405
>gi|345022340|ref|ZP_08785953.1| RNA methyltransferase [Ornithinibacillus scapharcae TW25]
Length = 459
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 93/360 (25%), Positives = 155/360 (43%), Gaps = 49/360 (13%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYG---WRCRAKLA 107
C F C GC + +NL + + + + I LD + WR R K+A
Sbjct: 78 CDVFYKCGGCQIQHMSYNLQLSMKQQQVKNVLRKIAHLDHVPVHPTIGMEDPWRYRNKVA 137
Query: 108 V-RGTSTSPLI-GLYQEGTHNVV-DIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+ G LI G YQ +H ++ D+ C + VE +R+ + +E YDE
Sbjct: 138 IPVGEKNGELITGFYQMRSHQIIEDMDTCVVQEDLNDRMVEAVRRIANRVGIEAYDEKSH 197
Query: 165 TGDLRYVQMAVTTYNTSLPASERYRNGK--VQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
G LR++ + R+G+ + +V +R + P++ EF+
Sbjct: 198 KGVLRHIMV---------------RSGRETKETMIVLITRTNELPHA------KEFI--- 233
Query: 223 GGSRSREHY--IHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQA 280
E Y + S+ N + NVI G + + L G+ ++++G I +++ SF Q
Sbjct: 234 --RELTETYPNVKSIIHNINPARTNVILGKKTKVLWGQEYIYDSIGPIRFAISAKSFYQV 291
Query: 281 NTRAFDILLRKLQKY--VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSF 338
N L K +Y + +V D Y G G I L L A+K + V VEI E+ ++
Sbjct: 292 NPTQTKHLYDKALEYAAIDENDTVIDAYCGIGTISLFL--AQKAKKVYGVEIVPEA-IAD 348
Query: 339 EKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSIG 395
K ++L + A+ + W + DV+VVDPPRKG D L++A+ +G
Sbjct: 349 AKVNAKLNGMTNVEFEVGTAEEVMP--KWKEDGLRPDVIVVDPPRKGCDEGLLNAMIEMG 406
>gi|431741806|ref|ZP_19530707.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2039]
gi|430601148|gb|ELB38764.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2039]
Length = 460
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 79/361 (21%), Positives = 154/361 (42%), Gaps = 56/361 (15%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRC 102
CP + C GC + + + +++ +A + FK G + T + +R
Sbjct: 76 CPVYYECGGCQLQHLAYQAQLDFKKDLLL-QALEKFKPAGFRSYQLLPTIGMDDPWHYRN 134
Query: 103 RAKLAVRGTSTSPLI--GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYD 160
+A+ +R + GLY+ +H +V I C PR + + Q + + + YD
Sbjct: 135 KAQFQLRKNKQTQKAEAGLYEANSHQLVPITDCLVQEPRTQKVMNTVVQLLNKFDAPIYD 194
Query: 161 EDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLW 220
E +G R + + + + G++Q+ V+ +R++K P + +
Sbjct: 195 ERTNSGIFRTIMVRIGV-----------KTGELQV--VFITRSKKFPQKNA-------MI 234
Query: 221 RNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQA 280
R R E + S+ N Q +++ G+ H+ G+ E + + L+P +F Q
Sbjct: 235 REINERLPE--VVSIMQNVQAQKTSLVMGDETIHVWGKEAIEEQINEVTFDLSPRAFFQL 292
Query: 281 NTRAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSF 338
N + ++L + K + ++ D Y G G IGLS+ A+K + V+ ++ ++
Sbjct: 293 NPQQTELLYGEGIKALDAQPDETIVDAYCGVGTIGLSV--AKKVKEVRGMDTVPQAIADA 350
Query: 339 EKTVSRLPKSVDGNISWHNADNSIEPL-----SWL---VGSDVLVVDPPRKGLDSSLVHA 390
++ RL +HN + WL D ++VDPPR GLD++L+ +
Sbjct: 351 KRNAERL--------GYHNTRYEVGTAEQVLPKWLNEGFQPDGIIVDPPRTGLDNALIQS 402
Query: 391 L 391
L
Sbjct: 403 L 403
>gi|251778308|ref|ZP_04821228.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
E1 str. 'BoNT E Beluga']
gi|243082623|gb|EES48513.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
E1 str. 'BoNT E Beluga']
Length = 455
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 87/358 (24%), Positives = 153/358 (42%), Gaps = 42/358 (11%)
Query: 53 QCPHFQSCSGCT-HEFNLHRPIIV--DEATDFFKSIGLLDFTFDSCRL------YGWRCR 103
+C +++ C GC+ N + + + D + IG L L Y +R +
Sbjct: 71 KCSNYKRCGGCSIQHMNYKKQLDFKWERVKDCIEKIGGLSKDLVKYPLGMGPNPYRYRNK 130
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
+L + + +IG Y +H+++D+ +C + + +Q IK+ N+EP D
Sbjct: 131 VQLPIGKINNEVVIGFYAPRSHDIIDLDYCLIQDKIADNVANITKQWIKKNNIEPATLDG 190
Query: 164 R---TGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLW 220
+ G L+++ + ++ +V + LV + N KL+ +
Sbjct: 191 QFNPNGILKHLMI-----------RRGFKTDEVMVVLVATTSN-----IPKLDEFKHIIL 234
Query: 221 RNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQA 280
N I S+ N NVI G L GE + +G +++P SF Q
Sbjct: 235 ENIKG------IKSIVLNINPKNTNVILGEECITLYGEDTIKDYIGEFKFNISPLSFFQV 288
Query: 281 NTRAFDILLRKLQKY--VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSF 338
N +IL K +Y + +V D Y G G I L L ++K + V VEI ES +
Sbjct: 289 NPIQTEILYNKALEYAELTENETVFDAYCGTGTITLFL--SQKAKKVYGVEI-IESAIIN 345
Query: 339 EKTVSRLPKSVDGNISWHNADNSIEP--LSWLVGSDVLVVDPPRKGLDSSLVHALQSI 394
K ++L +VD + + P ++ + +D++VVDPPRKG D L+ A+ +
Sbjct: 346 AKENAKL-NNVDNVEFFVGKSEEVIPNLINDGIKADIVVVDPPRKGCDVKLLEAIGEV 402
>gi|390961904|ref|YP_006425738.1| 23S rRNA (uracil-5-)-methyltransferase 2 [Thermococcus sp. CL1]
gi|390520212|gb|AFL95944.1| 23S rRNA (uracil-5-)-methyltransferase 2 [Thermococcus sp. CL1]
Length = 420
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/335 (23%), Positives = 151/335 (45%), Gaps = 41/335 (12%)
Query: 53 QCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTS 112
+C HF C GC + ++ + +A F + G+ T S R++G+R + V
Sbjct: 65 KCGHFGKCGGCLWQGMKYKEQLKLKAELFERITGISAETRGSPRIWGFRNVSNFIV---- 120
Query: 113 TSPLIGLYQEGT-HNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYV 171
T+ IGL + G VV + C R + LR+ + E ++P+D ++ G++ Y+
Sbjct: 121 TTAGIGLKEYGNPLGVVGLSECPVFSKRTRGYLRALREFLAETGLKPWDLREKRGEVHYL 180
Query: 172 QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHY 231
Q+ + G+V + L+ + R P+ + LE+ ++ +
Sbjct: 181 QVREGKFT-----------GEVMVNLIAHVR----PSEEVLEAFVDYF----------SF 215
Query: 232 IHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRK 291
S++ + + + G H+ GE E +G + + P+SF Q N+ A ++LLR
Sbjct: 216 ADSIYWSVKADERDDPRGEPL-HVSGEELIRERIGNVTYLIHPNSFFQTNSYALELLLRA 274
Query: 292 LQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDG 351
++ + G V DLY+G G G+ L A++ SV+ +E N F ++ ++G
Sbjct: 275 VEGFAE-GEKVLDLYSGVGTFGVYL--AKRGFSVEGIEAN-----PFAVEMANRNAELNG 326
Query: 352 NISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSS 386
+ + E G+ ++VDPPR+GL +
Sbjct: 327 VSATFRVGRAEEARIGDYGT--VIVDPPRRGLKEA 359
>gi|389818016|ref|ZP_10208509.1| RNA methyltransferase [Planococcus antarcticus DSM 14505]
gi|388464160|gb|EIM06494.1| RNA methyltransferase [Planococcus antarcticus DSM 14505]
Length = 456
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 89/353 (25%), Positives = 148/353 (41%), Gaps = 44/353 (12%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVDEATDFFKSIGLLDFTFDSCR--LYGWRCRA 104
CP F +C GC + + ++ D T K L D + + WR R
Sbjct: 74 CPVFDTCGGCQIQHLSYEGQMTFKQKLVRDAITRIGK---LPDVPVHPVKGMEHPWRYRN 130
Query: 105 KLAV-RGTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
K + GT ++ G YQ +H++ D C P +A + L++ + E+ +EPY+E
Sbjct: 131 KSQIPFGTQDGKVVAGFYQPRSHDIADTDTCLIQTPEADAIMVALKKNLIEMGIEPYEEA 190
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
G LR+V + R +I +V ++ +K P + + L +
Sbjct: 191 THRGMLRHVVV-------------RKARATGEIMVVLVTKKKKFPQAARAIELIQ----- 232
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ + S+ N + NVIFG L G+ + +G + ++ SF Q N
Sbjct: 233 ----ATVPEVTSIVQNINSEKTNVIFGEETLTLWGKDVIEDRIGDVRFEISARSFYQINP 288
Query: 283 RAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
++L + +Y +V D Y G G I L L A++ + V VEI ++ + K
Sbjct: 289 EQTEVLYGQALEYAQLTGEETVIDAYCGIGTISLFL--AQQAKFVMGVEIVPQA-IEDAK 345
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I P + G +DVLVVDPPRKG D L+ +
Sbjct: 346 RNAELNGLANTLFEAGPAEQVI-PRWYKEGKKADVLVVDPPRKGCDEQLLRTI 397
>gi|332710474|ref|ZP_08430421.1| 23S rRNA m(5)U-1939 methyltransferase [Moorea producens 3L]
gi|332350805|gb|EGJ30398.1| 23S rRNA m(5)U-1939 methyltransferase [Moorea producens 3L]
Length = 461
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/323 (23%), Positives = 148/323 (45%), Gaps = 36/323 (11%)
Query: 99 GWRCRAKLAVRGTSTSPL-IGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
G+R +A ++ ++T + G YQ+G+H ++++ C R+N + ++Q I++L
Sbjct: 137 GYRNKATYPLKRSATGSVQAGYYQKGSHQLINLNQCPVQDQRLNPLLGEIKQDIQQLGWS 196
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
Y+E G LR++ + + + G++ +TLV N K + +
Sbjct: 197 IYNESRHQGRLRHLSLQIGQ-----------QTGEMLLTLVTTDLNLKDLD------IQG 239
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
W N R + V N +NVIFG++ + G+ EN G+++ L P +F
Sbjct: 240 QTWLN-----RYPQLVGVCVNHNPHRSNVIFGSQTYCVAGQPYLRENFAGLELRLRPDTF 294
Query: 278 GQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q NT A ++LL + K + V D Y G G L L A++ +E+ S
Sbjct: 295 FQVNTEAAEVLLNLIIKQLALKGHECVVDAYCGIGTFTLPL--AQQVSQAIGIEVQAASV 352
Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWLVGSDVLVVDPPRKGLDSSLVHALQS 393
E+ ++G + S++ L + D++++DPPRKG +++ L+
Sbjct: 353 EQAEQNA-----LINGITNVKFQAGSVDQLLPQLTIAPDIILLDPPRKGCSPAVIDILRQ 407
Query: 394 IGSAERKAKSLSESSSSMVKEEK 416
+ A ++ +S + +++ ++ K
Sbjct: 408 V--APKRIVYISCNPATLARDLK 428
>gi|430851702|ref|ZP_19469437.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1258]
gi|430542284|gb|ELA82392.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1258]
Length = 457
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 137/311 (44%), Gaps = 58/311 (18%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+G+R +A++ VR + G Y++ +H++V I P I+ A++++R ++ V
Sbjct: 129 FGYRNKAQIPVRRIDGQLVTGFYKKNSHDLVPIEDFYIQDPVIDQAIKVVRDILQRFQVR 188
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLA 216
Y+E+ G LR++ + Y+ + +V +R EK S ++ E++
Sbjct: 189 GYNEEKNEGQLRHIIIRRGHYSHEM-------------MVVLVTRKEKFFKSKEIAEAIH 235
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
E L + SV N NVI G++ + L G + + G ++ S
Sbjct: 236 EELPE----------VVSVIQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKS 285
Query: 277 FGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q NT+ + L + ++ V D Y+G G IGLSL A + V +E+
Sbjct: 286 FYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIGTIGLSL--ADRVDKVYGMEV---- 339
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPP 379
+P++++ + ++ +N IE + + VG V+VVDPP
Sbjct: 340 ----------IPEAIE-DAQFNALNNKIENVHYEVGKAEKVMKKWQEKGVKPSVIVVDPP 388
Query: 380 RKGLDSSLVHA 390
RKGLD + +
Sbjct: 389 RKGLDHHFIES 399
>gi|424844708|ref|ZP_18269319.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Jonquetella anthropi
DSM 22815]
gi|363986146|gb|EHM12976.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Jonquetella anthropi
DSM 22815]
Length = 538
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 146/353 (41%), Gaps = 45/353 (12%)
Query: 54 CPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDF-----TFDSCRLYGWRCR 103
C +++C GC + L ++ E D + +G D S +G+R +
Sbjct: 66 CRWYETCGGCQLQHASRSLQLELKSLIVE--DSLRRLGGFDLPEKISCLPSPVQWGYRNK 123
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
A VR T++ G ++ GTH++V I C + LR +++ YDE
Sbjct: 124 ASFPVRRTASGETTGFFKMGTHDIVPIETCPLVCDQAAQLYGTLRGLVQDGGFSAYDEKT 183
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNG 223
G LR++ + +TY + L A LV S+ P+ + + SL + LWR
Sbjct: 184 GRGWLRHIVVRASTYGSGLLA-----------LLVVTSK----PDQEGMASLRD-LWRY- 226
Query: 224 GSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTR 283
+SR+ + + + S N I G+ + G E +G + +SF Q NT
Sbjct: 227 -LQSRQPALSGLALSINPSRGNRIIGDETVPVAGTDRVHECLGPFRLEYDGTSFFQVNTA 285
Query: 284 AFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
L VP G+ +LY G G L+ ARK R+V EI + V
Sbjct: 286 QAARLFDYASSLVPDGSRTLELYCGVG--SLTAFLARKSRAVTAAEI-------WPPAVE 336
Query: 344 RLPKSVDGNISWHNADNSIEPLSWL-----VGSDVLVVDPPRKGLDSSLVHAL 391
K++ GN + N + + P L G D LVVDPPR G D ++ L
Sbjct: 337 MARKNMSGN-NLTNVELRLSPAEKLPSDPFEGQDCLVVDPPRTGCDGEMLARL 388
>gi|300769546|ref|ZP_07079432.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|308181836|ref|YP_003925964.1| RNA methyltransferase [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|380033770|ref|YP_004890761.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus plantarum WCFS1]
gi|418273289|ref|ZP_12888917.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus plantarum subsp.
plantarum NC8]
gi|50401757|sp|Q88SY9.1|Y3226_LACPL RecName: Full=Uncharacterized RNA methyltransferase lp_3226
gi|300492961|gb|EFK28143.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|308047327|gb|ADN99870.1| RNA methyltransferase [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|342243013|emb|CCC80247.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus plantarum WCFS1]
gi|376010903|gb|EHS84227.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus plantarum subsp.
plantarum NC8]
Length = 481
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 148/328 (45%), Gaps = 46/328 (14%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGI---KEL 154
Y +R +A+ VR GLY+E +H++VD+P C P A + ++RQ + +EL
Sbjct: 154 YEYRNKAQFQVRLIDGHVAAGLYKENSHDLVDLPTCSVQMP---ATMTVMRQVVAWLEEL 210
Query: 155 NVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDK-LE 213
V YDE+ +G ++ ++ E G++Q+ + N+ K P + L
Sbjct: 211 QVPIYDEEHNSGIVK-----------TIVVREAAATGEIQLVFITNT--PKLPKKHQLLM 257
Query: 214 SLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLA 273
+AE L + SV N ++I+G++ L G+ E + G+ L+
Sbjct: 258 KIAEKL----------PMVVSVMQNINAGKTSLIWGDQTTLLAGKPTITEELDGLVFDLS 307
Query: 274 PSSFGQAN---TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLA-AARKCRSVKCVE 329
+F Q N T+ L R+ P ++ D Y+G G IGLSLA A++ R + +
Sbjct: 308 ARAFFQLNPQQTKKLYRLAREALNLAP-NETLVDAYSGVGTIGLSLADVAKEVRGMDTIP 366
Query: 330 INKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSS 386
+ + ++ N + + + WL D +VVDPPR GLD+
Sbjct: 367 AAVADANANAQ------RNQITNAHYEVGEAEVLLPQWLASGFAPDAMVVDPPRTGLDNV 420
Query: 387 LVHALQSIGSAERKAKSLSESSSSMVKE 414
L+ A+ + SA K +S + S++ ++
Sbjct: 421 LIDAI--LQSAPEKLVYISCNPSTLAQD 446
>gi|406590447|ref|ZP_11064814.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus sp. GMD1E]
gi|404469280|gb|EKA14092.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus sp. GMD1E]
Length = 407
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 137/311 (44%), Gaps = 58/311 (18%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+G+R +A++ VR G Y++ +H++V I P I+ A++++R ++ V
Sbjct: 79 FGYRNKAQIPVRRIDGQLATGFYKKNSHDLVPIEDFYIQDPVIDQAIKVVRDILQRFQVR 138
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLA 216
Y+E+ G LR++ + Y+ + +V +R EK S ++ E++
Sbjct: 139 GYNEEKNEGQLRHIIIRRGHYSHEM-------------MVVLVTRKEKFFKSKEIAEAIH 185
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
E L + SV N NVI G++ + L G + + G ++ S
Sbjct: 186 EELPE----------VVSVIQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKS 235
Query: 277 FGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q NT+ + L + ++ V D Y+G G IGLSLA + V +E+
Sbjct: 236 FYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIGTIGLSLAD--RVDKVYGMEV---- 289
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPP 379
+P++++ + +++ +N IE + + VG V+VVDPP
Sbjct: 290 ----------IPEAIE-DAQFNSLNNKIENVHYEVGKAEKVMKKWQEKGVKPSVIVVDPP 338
Query: 380 RKGLDSSLVHA 390
RKGLD + +
Sbjct: 339 RKGLDHHFIES 349
>gi|33240415|ref|NP_875357.1| SAM-dependent methyltransferase [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|50401517|sp|Q7VBX7.1|Y965_PROMA RecName: Full=Uncharacterized RNA methyltransferase Pro_0965
gi|33237942|gb|AAQ00010.1| SAM-dependent methyltransferase related to tRNA
(uracil-5-)-methyltransferase [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
Length = 419
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 89/360 (24%), Positives = 159/360 (44%), Gaps = 51/360 (14%)
Query: 53 QCPHFQSCSGCT-------HEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWR 101
+C + C GC+ ++F + + ++++ + K L DF + + + +R
Sbjct: 37 KCSFYSDCGGCSMQEIEPHYQFAIKKKLLINALSRIGK---LNDFPEPISITPSQFFHYR 93
Query: 102 CRAKLAVRGTST-SPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYD 160
++ V S + +IG YQ +H +VDI +C +IN A+ +R +K+ ++
Sbjct: 94 NKSTFPVYNESYGNTIIGYYQRNSHKIVDIDNCPVLDHKINKALSDIRLILKDNHINADH 153
Query: 161 EDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEK--SPNSDKLESLAEF 218
+ R G LR++ + + NT+ +V IT V N +K P ++KL
Sbjct: 154 DIRRKGGLRHISIR-SGINTN----------EVLITFVSNFSIKKLLFPITNKL------ 196
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
GS S + + N Q NN IFG L G ++ +DI + +SF
Sbjct: 197 ----NGSESN---VVGILNNIQPKPNNKIFGATTEILTGRDYIYDKFCHMDILIGSTSFF 249
Query: 279 QANT----RAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
Q N +A + +R + + D Y+G G + + LA+ V +EIN E+
Sbjct: 250 QVNLVEAEKAIN-CIRNIISNTNKIVRIIDAYSGIGTMSIPLAS--DGYRVIGIEINNEA 306
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSI 394
E + + I++ N D + L+ +D L++DPPRKGLD SL+ + +
Sbjct: 307 H---EIAIRNAEINNIKTITFENQDVTKYLPKILLPNDFLILDPPRKGLDPSLIDVITKL 363
>gi|376262823|ref|YP_005149543.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp.
BNL1100]
gi|373946817|gb|AEY67738.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp.
BNL1100]
Length = 460
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 87/349 (24%), Positives = 152/349 (43%), Gaps = 36/349 (10%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIVDEATDFFKSI----GLLDFTFDSC----RLYGWRCRAK 105
CP + C GC + ++ + + ++I GL D T ++ Y +R + +
Sbjct: 79 CPVYDKCGGCAVQHMSYQAQLDFKKDTVLQNIRRIGGLQDVTVNNTIGMENPYKYRNKVQ 138
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
V + IG Y+ +HN++D C N +++R K+ + YDE
Sbjct: 139 YPVGSNNGEIRIGFYETRSHNIIDGNLCDIQPDESNEIRDVVRNFCKDAGIAIYDEKTGK 198
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGS 225
G LR+V + + ++ G++ + LV N + SD+L + L +
Sbjct: 199 GLLRHVMV-----------RKGFKTGEIMVVLVVNG--DILVKSDEL---VKKLLKGFPD 242
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
I S+ N T N+I G++ + G+ + +G ++P SF Q N
Sbjct: 243 ------IKSIILNVNTRNTNIILGDKNICIYGQKYITDFIGSFRFEISPLSFFQVNPIQT 296
Query: 286 DILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
++L K +Y +V DLY G G I L L ++K + V VE+ ++ +S K +
Sbjct: 297 EVLYEKALEYAGLSGNETVFDLYCGIGTISLFL--SQKAKRVVGVEVVADA-ISDAKRNA 353
Query: 344 RLPKSVDGNISWHNADNSI-EPLSWLVGSDVLVVDPPRKGLDSSLVHAL 391
+ + A+ I E + V +DV+VVDPPRKG D L++ L
Sbjct: 354 EINDVSNVEFLVGEAEKVIPELYAQGVKADVVVVDPPRKGCDEVLLNTL 402
>gi|448822582|ref|YP_007415744.1| putative RNA methyltransferase [Lactobacillus plantarum ZJ316]
gi|448276079|gb|AGE40598.1| putative RNA methyltransferase [Lactobacillus plantarum ZJ316]
Length = 481
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 148/328 (45%), Gaps = 46/328 (14%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGI---KEL 154
Y +R +A+ VR GLY+E +H++VD+P C P A + ++RQ + +EL
Sbjct: 154 YEYRNKAQFQVRLIDGHVAAGLYKENSHDLVDLPTCSVQMP---ATMTVMRQVVAWLEEL 210
Query: 155 NVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDK-LE 213
V YDE+ +G ++ ++ E G++Q+ + N+ K P + L
Sbjct: 211 QVPIYDEEHNSGIVK-----------TIVVREAAATGEIQLVFITNT--PKLPKKHQLLM 257
Query: 214 SLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLA 273
+AE L + SV N ++I+G++ L G+ E + G+ L+
Sbjct: 258 KIAEKL----------PMVVSVMQNINAGKTSLIWGDQTTLLAGKPTITEELDGLVFDLS 307
Query: 274 PSSFGQAN---TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLA-AARKCRSVKCVE 329
+F Q N T+ L R+ P ++ D Y+G G IGLSLA A++ R + +
Sbjct: 308 ARAFFQLNPQQTKKLYRLAREALNLAP-NETLVDAYSGVGTIGLSLADVAKEVRGMDTIP 366
Query: 330 INKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSS 386
+ + ++ N + + + WL D +VVDPPR GLD+
Sbjct: 367 AAVADANANAQ------RNQITNAHYEVGEAEVLLPQWLASGFAPDAMVVDPPRTGLDNV 420
Query: 387 LVHALQSIGSAERKAKSLSESSSSMVKE 414
L+ A+ + SA K +S + S++ ++
Sbjct: 421 LIDAI--LQSAPEKLVYISCNPSTLAQD 446
>gi|23098223|ref|NP_691689.1| RNA methyltransferase [Oceanobacillus iheyensis HTE831]
gi|50401583|sp|Q8ES75.1|Y768_OCEIH RecName: Full=Uncharacterized RNA methyltransferase OB0768
gi|22776448|dbj|BAC12724.1| RNA methyltransferase [Oceanobacillus iheyensis HTE831]
Length = 459
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 132/308 (42%), Gaps = 53/308 (17%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVV-DIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R + ++ V + ++G YQ+ +H ++ + C IN + RQ + + ++
Sbjct: 130 YRNKVQIPVGEKNGEVIVGFYQKRSHRILQNQDTCHIQDEAINEVLPFTRQLMNKYGIQA 189
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAE 217
YDE G LR++ + V Y I +V+ ++ K P D++ + L E
Sbjct: 190 YDEKSHRGQLRHIMVRVGHYTKD-------------IMIVFVTKTSKFPEKDRIIKELTE 236
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
+ + S+ N NV+ G + + L GE ++ +G + +++P SF
Sbjct: 237 QFPQ----------VKSIVQNVNDQRTNVVLGKKTKVLWGENYIYDKIGDLTFAISPKSF 286
Query: 278 GQANTRAFDILLRKLQKY--VPYGASVTDLYAGAGVIGLSLA-AARKCRSVKCV------ 328
Q N +L K +Y + V D Y G G I L LA A+K ++ V
Sbjct: 287 FQVNPVQTKVLYDKALEYANIDKDDVVIDAYCGIGSISLFLAQKAKKVYGIEVVPEAIED 346
Query: 329 -----EINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGL 383
EIN + + F +V + K + W + ++P DV+VVDPPRKG
Sbjct: 347 AKMNAEINGMNNVEF--SVGQAEKVMP---KW--KEQGLDP-------DVIVVDPPRKGC 392
Query: 384 DSSLVHAL 391
D + A+
Sbjct: 393 DVDFLEAM 400
>gi|354567385|ref|ZP_08986554.1| RNA methyltransferase, TrmA family [Fischerella sp. JSC-11]
gi|353542657|gb|EHC12118.1| RNA methyltransferase, TrmA family [Fischerella sp. JSC-11]
Length = 457
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 138/310 (44%), Gaps = 36/310 (11%)
Query: 88 LDFTFDSCRLYGWRCRAKLAVRGTSTSPL-IGLYQEGTHNVVDIPHCKAHHPRINAAVEL 146
+D + G+R +A + ++T + G YQ+G+H ++++ C PR+N+ +
Sbjct: 118 VDLVLRAASPLGYRNKATYPMGVSATGNVQAGYYQKGSHQLINLNQCPVQDPRLNSLLAE 177
Query: 147 LRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLV---WNSRN 203
++Q I++ N Y+E D TG +R++ + + R G++ +TLV WN
Sbjct: 178 IKQDIQKRNWAIYNEKDHTGTIRHLGLRIGR-----------RTGEILLTLVVKDWNLPG 226
Query: 204 EKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWE 263
K + W N R + V N+ N IFG+ ++G E
Sbjct: 227 IKEQAQE---------WLN-----RYPTLVGVCLNYNPKRTNTIFGSETLCIVGADYLRE 272
Query: 264 NVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCR 323
G++ + P +F Q +T + LL+ +Q + + L A G+ L+L A++
Sbjct: 273 EFAGLEFQVRPDTFFQVSTETTETLLQVIQSELHLRGTEVLLDAYCGIGTLTLPLAKQVH 332
Query: 324 SVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWLVGSDVLVVDPPRK 381
+EI E + E+ + + N+ + ++E L + D++++DPPRK
Sbjct: 333 QAIGLEIQPE---AVEQAICNAQNNQIHNVIFMTG--AVEKLLPQLEIKPDIVLLDPPRK 387
Query: 382 GLDSSLVHAL 391
G D ++ L
Sbjct: 388 GCDRQVIATL 397
>gi|430949111|ref|ZP_19486030.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1576]
gi|430557956|gb|ELA97392.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1576]
Length = 457
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 137/311 (44%), Gaps = 58/311 (18%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+G+R +A++ VR G Y++ +H++V I P I+ A++++R ++ V
Sbjct: 129 FGYRNKAQIPVRRIDGQLATGFYKKNSHDLVPIEDFYIQDPVIDQAIKVVRDILQRFQVR 188
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLA 216
Y+E+ G LR++ + Y+ + +V +R EK S ++ E++
Sbjct: 189 GYNEEKNEGQLRHIIIRRGHYSHEM-------------MVVLVTRKEKFFKSKEIAEAIH 235
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
E L + SV N NVI G++ + L G + + G ++ S
Sbjct: 236 EELPE----------VVSVIQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKS 285
Query: 277 FGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q NT+ + L + ++ V D Y+G G IGLSLA + V +E+
Sbjct: 286 FYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIGTIGLSLAD--RVDKVYGMEV---- 339
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPP 379
+P++++ + +++ +N IE + + VG V+VVDPP
Sbjct: 340 ----------IPEAIE-DAQFNSLNNKIENVHYEVGKAEKVMKKWQEKGVKPSVIVVDPP 388
Query: 380 RKGLDSSLVHA 390
RKGLD + +
Sbjct: 389 RKGLDHHFIES 399
>gi|423613778|ref|ZP_17589637.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD107]
gi|401240847|gb|EJR47245.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD107]
Length = 458
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 84/353 (23%), Positives = 152/353 (43%), Gaps = 42/353 (11%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
+CP + C GC T+E L + D + IG L + +R
Sbjct: 78 ECPVYSQCGGCQLQHLTYEGQLKAK--EKQVRDVMQRIGGLSDVPVHPVLGMENPWVYRN 135
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+A++ + + G Y++GTH+++++ C + ++ +++ ++ + Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEE 195
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
G LR+V MA RY +I LV+ +R + P+ + E +A
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPSKKAIIEEIA----- 237
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
++ + S+ N T NVIFG+ L G ++ +G I +++ SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNTKRTNVIFGDTTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K +Y + T + A G+ +SL A+K + V VEI E+ +
Sbjct: 293 PEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 352
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I W V +D +VVDPPRKG D +L++ +
Sbjct: 353 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402
>gi|325570600|ref|ZP_08146326.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus casseliflavus
ATCC 12755]
gi|325156446|gb|EGC68626.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus casseliflavus
ATCC 12755]
Length = 465
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 137/315 (43%), Gaps = 58/315 (18%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+G+R +A++ V+ G Y++ +H +V I P I+ A+ +R ++ NV+
Sbjct: 138 FGYRNKAQIPVQKIHGELTTGFYRKNSHTLVPIEDFYIQDPNIDQAIIKVRDILQRFNVK 197
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
Y+E+ G LR++ + + +G++ + LV + P K E +AE
Sbjct: 198 AYNEEAHEGFLRHIVV-----------RRGHHSGEMMVVLVT-----RKPKFFKGEEIAE 241
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
+ + SV N NVI G R L G++ + + G ++ SF
Sbjct: 242 VIHEEIPE------VVSVIQNINEEKTNVIMGEFERVLYGKSSIDDQLLGKTFQISAKSF 295
Query: 278 GQANTRAFDILLRKLQK--YVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q NT ++L + K ++ V D YAG G IG+SL A + + V +E+
Sbjct: 296 YQVNTAQTEVLYQTAFKMAHLSENDVVVDAYAGIGTIGISL--ADRVKEVLGMEV----- 348
Query: 336 LSFEKTVSRLPKSVDGNISWHNAD-NSIEPLSWLVGS---------------DVLVVDPP 379
+P++V N + NA N +E + + +G V+ VDPP
Sbjct: 349 ---------IPEAV--NDAKANAKRNGVENVHYFIGKAEKIMPQWLREGIQPTVVFVDPP 397
Query: 380 RKGLDSSLVHALQSI 394
RKGLD+S + ++
Sbjct: 398 RKGLDASFIETTAAV 412
>gi|294618092|ref|ZP_06697689.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1679]
gi|291595664|gb|EFF26960.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1679]
Length = 457
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 137/311 (44%), Gaps = 58/311 (18%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+G+R +A++ VR G Y++ +H++V I P I+ A++++R ++ V
Sbjct: 129 FGYRNKAQIPVRRIDGQLATGFYKKNSHDLVPIEDFYIQDPVIDQAIKVVRDILQRFQVR 188
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLA 216
Y+E+ G LR++ + Y+ + +V +R EK S ++ E++
Sbjct: 189 GYNEEKNEGQLRHIIIRRGHYSHEM-------------MVVLVTRKEKFFKSKEIAEAIH 235
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
E L + SV N NVI G++ + L G + + G ++ S
Sbjct: 236 EELPE----------VVSVIQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKS 285
Query: 277 FGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q NT+ + L + ++ V D Y+G G IGLSLA + V +E+
Sbjct: 286 FYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIGTIGLSLAD--RVDKVYGMEV---- 339
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPP 379
+P++++ + +++ +N IE + + VG V+VVDPP
Sbjct: 340 ----------IPEAIE-DAQFNSLNNKIENVHYEVGKAEKVMKKWQEKGVKPSVIVVDPP 388
Query: 380 RKGLDSSLVHA 390
RKGLD + +
Sbjct: 389 RKGLDHHFIES 399
>gi|77413832|ref|ZP_00790011.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae 515]
gi|77160132|gb|EAO71264.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae 515]
Length = 453
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 152/330 (46%), Gaps = 48/330 (14%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A++ VR G +++ +H +V I I+A + R +++ +V+P
Sbjct: 125 AYRNKAQVPVRRVDGQLETGFFRKNSHTLVSIEDYLIQEKEIDALINFTRDLLRKFDVKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE+ ++G +R +L + G++ + LV P ++ + E
Sbjct: 185 YDEEQQSGLIR-----------NLVVRRGHYTGQLMLVLVTTR-----PKIFLIDQMIEK 228
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
L S + S+ N +NVIFG +R L G + + G +++ SF
Sbjct: 229 LVSAFPS------VVSIMQNINDRNSNVIFGKEFRTLYGSDTIEDQMLGNTYAISAQSFY 282
Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q NT + L +K + + V D Y+G G IGLS+ A++ + V VE+
Sbjct: 283 QVNTEMAEKLYQKAIDFSDLNSEDIVIDAYSGIGTIGLSV--AKQVKHVYGVEV------ 334
Query: 337 SFEKTVSRLPKSVDGN---ISWHNADNSIEPLS-WL---VGSDVLVVDPPRKGLDSSLVH 389
EK VS ++ N S + AD++ ++ WL + V++VDPPRKGL S V+
Sbjct: 335 -VEKAVSDAKENATRNGITNSTYVADSAENAMAKWLKEGIKPTVIMVDPPRKGLTESFVY 393
Query: 390 ALQSIGSAERKAKSLSE---SSSSMVKEEK 416
+ +A+ KA ++ +S++M ++ K
Sbjct: 394 S-----AAQTKADKITYISCNSATMARDIK 418
>gi|406580657|ref|ZP_11055848.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus sp. GMD4E]
gi|406582964|ref|ZP_11058059.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus sp. GMD3E]
gi|406585308|ref|ZP_11060300.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus sp. GMD2E]
gi|410937234|ref|ZP_11369095.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus sp.
GMD5E]
gi|427396214|ref|ZP_18888973.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus durans
FB129-CNAB-4]
gi|430860238|ref|ZP_19477842.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1573]
gi|431005431|ref|ZP_19489077.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1578]
gi|431229818|ref|ZP_19502021.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1622]
gi|431252345|ref|ZP_19504403.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1623]
gi|431293405|ref|ZP_19506873.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1626]
gi|431658083|ref|ZP_19523883.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1904]
gi|447912538|ref|YP_007393950.1| RNA methyltransferase, TrmA family [Enterococcus faecium NRRL
B-2354]
gi|404453640|gb|EKA00685.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus sp. GMD4E]
gi|404457370|gb|EKA03914.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus sp. GMD3E]
gi|404462824|gb|EKA08531.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus sp. GMD2E]
gi|410734345|gb|EKQ76265.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus sp.
GMD5E]
gi|425722884|gb|EKU85775.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus durans
FB129-CNAB-4]
gi|430552675|gb|ELA92403.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1573]
gi|430561464|gb|ELB00732.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1578]
gi|430573804|gb|ELB12582.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1622]
gi|430578771|gb|ELB17323.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1623]
gi|430582042|gb|ELB20477.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1626]
gi|430600443|gb|ELB38088.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1904]
gi|445188247|gb|AGE29889.1| RNA methyltransferase, TrmA family [Enterococcus faecium NRRL
B-2354]
Length = 457
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 137/311 (44%), Gaps = 58/311 (18%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+G+R +A++ VR G Y++ +H++V I P I+ A++++R ++ V
Sbjct: 129 FGYRNKAQIPVRRIDGQLATGFYKKNSHDLVPIEDFYIQDPVIDQAIKVVRDILQRFQVR 188
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLA 216
Y+E+ G LR++ + Y+ + +V +R EK S ++ E++
Sbjct: 189 GYNEEKNEGQLRHIIIRRGHYSHEM-------------MVVLVTRKEKFFKSKEIAEAIH 235
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
E L + SV N NVI G++ + L G + + G ++ S
Sbjct: 236 EELPE----------VVSVIQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKS 285
Query: 277 FGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q NT+ + L + ++ V D Y+G G IGLSL A + V +E+
Sbjct: 286 FYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIGTIGLSL--ADRVDKVYGMEV---- 339
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPP 379
+P++++ + +++ +N IE + + VG V+VVDPP
Sbjct: 340 ----------IPEAIE-DAQFNSLNNKIENVHYEVGKAEKVMKKWQEKGVKPSVIVVDPP 388
Query: 380 RKGLDSSLVHA 390
RKGLD + +
Sbjct: 389 RKGLDHHFIES 399
>gi|313113178|ref|ZP_07798804.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310624517|gb|EFQ07846.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 456
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 95/373 (25%), Positives = 150/373 (40%), Gaps = 53/373 (14%)
Query: 33 PSSLPLDPPAANLPSLTCALQCPHFQSCSGCTH---EFNLHRPIIVDEATDFFKSIGLLD 89
P +P+D CA+ P C GC+ ++ + D F IG LD
Sbjct: 67 PDRIPVD----------CAVAGP----CGGCSLRHLDYAAELRAKQENVADAFARIGGLD 112
Query: 90 F----TFDSCRLYGWRCRAKLAVR-GTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAV 144
S + +R + + V S P IG Y TH +V P C+ +N
Sbjct: 113 VPVLPIVGSPEVNRYRNKVQFPVGVDKSGKPCIGFYAGRTHRIVPCPDCRLQPGVLNEIG 172
Query: 145 ELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNE 204
L E ++PY E+ G +R++ + + +G++ + LV
Sbjct: 173 NALCAFFAEKGIQPYSEETGRGLVRHIFLRRGAH-----------SGQIMVCLVC----- 216
Query: 205 KSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWEN 264
KL S E R +++ I ++ N NVI G L G+ +
Sbjct: 217 ---TRAKLPSAEELCTR---LKAQFAEITTILLNVNAKNTNVILGTETHTLYGQGYIEDT 270
Query: 265 VGGIDISLAPSSFGQANTRAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAAARKC 322
+ G+ + L P SF Q NT A + L +Y + DLY G G IGLS+AA C
Sbjct: 271 LCGVPVQLGPLSFYQVNTLAAEHLYGIAAQYAQLTPDDLLLDLYCGMGTIGLSMAA--HC 328
Query: 323 RSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS----DVLVVDP 378
R + VEI E+ S + +R+ V + AD + + L D++++DP
Sbjct: 329 RELIGVEIVPEAIESAKANAARMGADVAAKSRFFCADAG-QAATRLAAEGLHPDIVMLDP 387
Query: 379 PRKGLDSSLVHAL 391
PRKG D + + A+
Sbjct: 388 PRKGCDEATLSAV 400
>gi|227530251|ref|ZP_03960300.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
vaginalis ATCC 49540]
gi|227349840|gb|EEJ40131.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
vaginalis ATCC 49540]
Length = 458
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 84/338 (24%), Positives = 151/338 (44%), Gaps = 60/338 (17%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
Y +R +A++ V+ G Y+ G+H +V I P I+ + ++R +++ +V
Sbjct: 128 YHYRNKAQVPVKMVRGQLETGFYKRGSHTLVPIEDFYIQDPAIDQVIIVVRDLLRKYHVT 187
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
PYDE G +R V + Y + +V + LV N++ + P ++++
Sbjct: 188 PYDERTGKGVIRTVMV-----------RRGYYSHEVMVVLVTNTK--RLPMAEQIVD--- 231
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
G + + S+ N N + G++ + L G + + + GID +++P SF
Sbjct: 232 ------GIVAVVPEVKSIVQNINDKKTNRLLGDKNKTLWGADEIHDQLLGIDFAISPLSF 285
Query: 278 GQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q N + + L + S V D Y G G I SLA A+ + V VEI
Sbjct: 286 YQVNPQQTERLYQTAIDNAGLDGSQTVIDAYCGIGTI--SLAVAKHAKQVYGVEI----- 338
Query: 336 LSFEKTVSRLPKSVDGNISWHNAD-NSIEPLSWLVGS---------------DVLVVDPP 379
+P ++D + HNA N I+ ++VG DV++VDPP
Sbjct: 339 ---------VPAAIDD--AKHNAKRNGIKNAKFVVGKAEEQFAKWQEDGLKPDVVIVDPP 387
Query: 380 RKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKR 417
RKGL SL+ A + A +K +S + ++++++ +R
Sbjct: 388 RKGLAESLIEATGKM--APQKVIYVSCNPATLIRDIQR 423
>gi|293365360|ref|ZP_06612077.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
ATCC 35037]
gi|291316810|gb|EFE57246.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
ATCC 35037]
Length = 451
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 140/306 (45%), Gaps = 40/306 (13%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFFIQDPMIDEVVVALRDLLRRYDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E L
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVILVTTR-----PKVFRVDQLIEQL 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D ++ +F Q
Sbjct: 230 IKQFPE------IVSVVQNINDQNTNAIFGKDWRTLYGQDYITDQMLGNDFQISGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKGDDVVIDAYSGIGTIGLSV--AKHVKEVYGVEVIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWH----NADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHA 390
+K S++G + H A+N+++ +WL + ++VDPPRKGL S + A
Sbjct: 342 SQKNA-----SINGITNAHYVCDTAENAMK--NWLKEGIQPTAILVDPPRKGLTESFIKA 394
Query: 391 LQSIGS 396
G+
Sbjct: 395 GSQTGA 400
>gi|414563650|ref|YP_006042611.1| RNA methyltransferase [Streptococcus equi subsp. zooepidemicus ATCC
35246]
gi|338846715|gb|AEJ24927.1| RNA methyltransferase [Streptococcus equi subsp. zooepidemicus ATCC
35246]
Length = 451
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 87/340 (25%), Positives = 152/340 (44%), Gaps = 40/340 (11%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
Y +R +A++ VR + G +++ +H +V I I+ + R ++ +++
Sbjct: 124 YAYRNKAQVPVRRVNGQLETGFFRKHSHELVPISDFYIQDKEIDRLIAFTRDLLRRFDIK 183
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESL-A 216
PYDE +++G +R+ L + +G++ + LV +R + + ++SL A
Sbjct: 184 PYDEKEQSGLIRH-----------LVVRRGHYSGEIMLVLV-TTRPKIFRINQMIDSLVA 231
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
EF I S+ N NVIFG + L G+ + + G ++ S
Sbjct: 232 EFPA-----------ITSILQNINDKPTNVIFGKAFTRLYGKETITDTILGNQYCISAQS 280
Query: 277 FGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q NT + L + + A V D Y+G G IGLS A++ ++V VE+ + +
Sbjct: 281 FYQVNTTMAEKLYQTAIDFSELTADDVVIDAYSGIGTIGLSF--AKEVKAVYGVEVIEAA 338
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIE--PLSWL---VGSDVLVVDPPRKGLDSSLVH 389
EK +R +G + H +S E +W + V++VDPPRKGL S +
Sbjct: 339 VRDAEKNAAR-----NGITNAHYVADSAENAMANWCQEGIKPTVIIVDPPRKGLTESFIK 393
Query: 390 ALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQ 429
A S K +S + ++M ++ KR L K VQ
Sbjct: 394 A--SAAMQPDKITYISCNPATMARDIKRYEELGYKLQKVQ 431
>gi|309800304|ref|ZP_07694477.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus infantis
SK1302]
gi|308116088|gb|EFO53591.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus infantis
SK1302]
Length = 454
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/322 (24%), Positives = 149/322 (46%), Gaps = 34/322 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ + LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFYIQDPVIDQVIVALRDLLRRYDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ I LV P ++E + E L
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHHSGQIMIILVTTR-----PKVFRVEQVIEQL 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G + + G D ++ +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGPDYITDQMLGNDFQISGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKDNDVVIDAYSGIGTIGLSV--AKYVKEVHGVEVIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K + L + + A+N+++ +WL + ++VDPPRKGL S + A S+
Sbjct: 342 SQKN-AVLNNITNAHYVCDTAENAMK--NWLKEGIQPTAILVDPPRKGLTESFIKA--SV 396
Query: 395 GSAERKAKSLSESSSSMVKEEK 416
+ + +S + ++M ++ K
Sbjct: 397 QTGANRIAYISCNVATMARDIK 418
>gi|406027506|ref|YP_006726338.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus buchneri CD034]
gi|405125995|gb|AFS00756.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus buchneri CD034]
Length = 456
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 139/304 (45%), Gaps = 46/304 (15%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G Y++ +H++V I P+I+ AV ++R +++ V+PY
Sbjct: 129 YRNKAQIPVRSINGQLQTGFYRKHSHDLVPIEDFYIQDPKIDEAVVVVRDILRKFRVQPY 188
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-----ES 214
DE G +R + + Y+ ++ +V +R EK P+S ++ +S
Sbjct: 189 DEQTNKGVVRNIMVRRGHYSH-------------EMMIVLITRTEKLPSSSEIVAEIEQS 235
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
L E + S+ N N + G + + L G++ + + G+ ++
Sbjct: 236 LPE--------------VKSIVQNVNPEKTNALMGKKNKVLAGKSTIEDTLLGLKFDISA 281
Query: 275 SSFGQAN----TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEI 330
SSF Q N + +D+ +K + V D Y G G I LS+ AR + V VEI
Sbjct: 282 SSFYQVNPVQTEKLYDLATKKAD--LSADDVVIDAYCGIGTISLSM--ARVAKQVYGVEI 337
Query: 331 NKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSL 387
E+ +K ++L N+ + + W + DV+ VDPPRKGLD+SL
Sbjct: 338 VPEAVEDAKKN-AKLNNLT--NVHFVTGKAETQMAKWQEDGLKPDVISVDPPRKGLDASL 394
Query: 388 VHAL 391
+ ++
Sbjct: 395 IDSV 398
>gi|331702034|ref|YP_004398993.1| RNA methyltransferase, TrmA family [Lactobacillus buchneri NRRL
B-30929]
gi|329129377|gb|AEB73930.1| RNA methyltransferase, TrmA family [Lactobacillus buchneri NRRL
B-30929]
Length = 456
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 140/304 (46%), Gaps = 46/304 (15%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G Y++ +H++V I P+I+ AV ++R +++ V+PY
Sbjct: 129 YRNKAQIPVRSINGQLQTGFYRKHSHDLVPIEDFYIQDPKIDEAVVVVRDILRKFRVQPY 188
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-----ES 214
DE G +R + + Y+ ++ +V +R EK P+S ++ +S
Sbjct: 189 DEQTNKGVVRNIMVRRGYYSH-------------EMMIVLITRTEKLPSSSEIVAEVEQS 235
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
L E + S+ N N + G + + L G++ + + G+ ++
Sbjct: 236 LPE--------------VKSIVQNVNPEKTNALMGKKNKVLAGKSTIEDTLLGLKFDISA 281
Query: 275 SSFGQAN----TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEI 330
SSF Q N + +D+ +K + V D Y G G I LS+ AR + V VEI
Sbjct: 282 SSFYQVNPVQTEKLYDLATKKAD--LSADDVVIDAYCGIGTISLSM--ARVAKQVYGVEI 337
Query: 331 NKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSL 387
E+ +K ++L N+ + + + W + DV+ VDPPRKGLD+SL
Sbjct: 338 VPEAVEDAKKN-AKLNNLT--NVHFVASKAETQMAKWQEDGLKPDVISVDPPRKGLDASL 394
Query: 388 VHAL 391
+ ++
Sbjct: 395 IDSV 398
>gi|315651321|ref|ZP_07904348.1| TrmA family RNA methyltransferase [Lachnoanaerobaculum saburreum
DSM 3986]
gi|315486420|gb|EFU76775.1| TrmA family RNA methyltransferase [Lachnoanaerobaculum saburreum
DSM 3986]
Length = 418
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 87/352 (24%), Positives = 155/352 (44%), Gaps = 43/352 (12%)
Query: 52 LQCPHFQSCSGCTH---EFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAV 108
L+C + C GC + +N H + A K G D Y +R + AV
Sbjct: 16 LKCAVAKKCGGCDYINSSYNKHVKEKLAIANSLIKKYGKFDGIVSMSNPYHYRNKVS-AV 74
Query: 109 RGTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGD 167
G +I G Y++ TH VVD +C + +A ++ +++ ++ YDED G
Sbjct: 75 FGFENKKIIAGTYEKNTHRVVDTKNCLIEDKKASAIIQTIKKMCISFKIKAYDEDSGFGF 134
Query: 168 LRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRS 227
LR+V + V ++G++ + LV ++ ++ N+ F+ G
Sbjct: 135 LRHVLIRVGK-----------KSGQIMVVLVTSNVIFQNKNA--------FIKVLRG--- 172
Query: 228 REH-YIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFD 286
EH I ++ N +++ G+R + G+ + + G+ ++P SF Q N +
Sbjct: 173 -EHPEITTIVQNINNKNTSMVLGDREIVMYGKGYITDELCGLTFKISPKSFYQVNRDQTE 231
Query: 287 ILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKC-RSVKCVEINKESQLSFEKTVS 343
L + +Y + D Y+G G IGL A KC + V VE+NK+S + ++
Sbjct: 232 KLYSQAIEYAGLQGDEVLLDAYSGIGTIGL---IASKCVKEVISVELNKDSH---KDAIT 285
Query: 344 RLPKSVDGNISWHNADNS--IEPLSWLVGS--DVLVVDPPRKGLDSSLVHAL 391
+ N+ ++NAD + I L+ G DV+++DPPR G + A+
Sbjct: 286 NAKINNIKNVKFYNADATAFINDLAA-AGEKIDVVILDPPRTGSTDEFIAAV 336
>gi|269217160|ref|ZP_06161014.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia exigua ATCC
700122]
gi|269129297|gb|EEZ60382.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia exigua ATCC
700122]
Length = 376
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 122/290 (42%), Gaps = 46/290 (15%)
Query: 116 LIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAV 175
L G+Y+ GTH V+D C + A ++ +RQ + +L +EPYDED TG LR+ Q+ V
Sbjct: 60 LCGMYERGTHRVIDSSECLIENQVAKAIIQSVRQLMPKLRIEPYDEDADTGFLRHAQVRV 119
Query: 176 TTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSV 235
+ +G+V +TLV +R+E P + LA L R R I +V
Sbjct: 120 G-----------HASGEVMVTLV--TRDEAFPAGKR---LARELVR------RHPQITTV 157
Query: 236 WANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKY 295
N T NVI G++ R + G + + G+ ++ SF Q N+ ++L R +
Sbjct: 158 VQNVNTRRTNVIMGDKERTIYGPGFILDELCGLSFRISSRSFYQVNSEQTEVLYRTAVEM 217
Query: 296 VPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNI 353
++ D Y G G IGL A K ++ K R+ D
Sbjct: 218 AGLTGEETILDAYCGTGTIGLVAA--------KGID-GKPGAKHLIGVEERMDAVADART 268
Query: 354 -SWHNADNSIEPLSWLVGS------------DVLVVDPPRKGLDSSLVHA 390
+ HN S E S G+ D + +DPPR G + A
Sbjct: 269 NARHNGIGSAEFFSDDAGAFMRRLAAEGGSVDAVFMDPPRAGATPDFLKA 318
>gi|296451840|ref|ZP_06893559.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile
NAP08]
gi|296879764|ref|ZP_06903738.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile
NAP07]
gi|296259319|gb|EFH06195.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile
NAP08]
gi|296429235|gb|EFH15108.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile
NAP07]
Length = 452
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 91/362 (25%), Positives = 154/362 (42%), Gaps = 51/362 (14%)
Query: 56 HFQSCSGCT---HEFNLHRPIIVDEATDFFKSIGLLD--FTFDSCRL---YGWRCRAKLA 107
+ + C GC ++N + +E IG L+ D+ + Y +R +A+
Sbjct: 75 NLRDCGGCQIQDLDYNKQLEMKTNEVKQVLSRIGKLEDVEVHDTIGMDNPYRYRNKAQFP 134
Query: 108 VRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGD 167
++ + P+IG Y++ TH+V+ C H + V++++ I+ V YDE TG
Sbjct: 135 IQKNNGVPIIGFYKKKTHDVISTEKCVIQHEINDKIVKIIKTYIRAYKVSIYDEKTHTGL 194
Query: 168 LRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRS 227
+R+ L + +V + LV N K P L+ LA L N
Sbjct: 195 IRH-----------LVTKIGFTTKEVMVVLVANGN--KLP---YLKELASVLKENIPG-- 236
Query: 228 REHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDI 287
++ N N I G + G+ + +G + ++P SF Q N +
Sbjct: 237 ----FKTLVVNVNQKDTNAILGKENIVIYGDGKINDYIGDLVFEISPLSFFQVNPVQTKV 292
Query: 288 LLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRL 345
L K +Y +V D+Y G G I L L A+K + V +EI ++ + K ++L
Sbjct: 293 LYDKALEYADLNETDTVFDIYCGIGTISLFL--AQKAKKVYGIEIIDDA-IKDAKINAKL 349
Query: 346 PKSVDGNISWHNAD------NSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHALQSIGSA 397
+ HNA+ I P + G ++V+VVDPPRKG D ++ + S+ S
Sbjct: 350 N-------NMHNAEFYVGKAEEIVPKMYREGKTANVVVVDPPRKGCDEKVLETIVSM-SP 401
Query: 398 ER 399
ER
Sbjct: 402 ER 403
>gi|374297936|ref|YP_005048127.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
clariflavum DSM 19732]
gi|359827430|gb|AEV70203.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
clariflavum DSM 19732]
Length = 456
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 89/371 (23%), Positives = 155/371 (41%), Gaps = 65/371 (17%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLD--FTFDSCRL---YGWRCRAK 105
C + C GC+ + ++ D T+ + IG L D+ + + +R +A+
Sbjct: 74 CKVYNRCGGCSLQHMSYDATLKFKTDLVTENIRRIGGLQGVVVHDTIGMDNPFNYRNKAQ 133
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
V ++G Y + +H++V+ C H + A ++++ ++E + YDE
Sbjct: 134 FPVGIQRGELVVGFYAKRSHDIVNSHMCLIQHSDCDKAKLIVKRFLEENKISIYDETTGK 193
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGS 225
G +R++ V ++ G++ + LV N P D L + R
Sbjct: 194 GLVRHIMTRVG-----------FKTGEMMVVLVINGNT--LPKQDLL------VKRLTAE 234
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
+ I S+ N T+ NVI G++ L GE + + +G ++P SF Q N
Sbjct: 235 MPQ---IKSIVLNINTANTNVILGSKNIVLFGEENITDYIGNFKFKISPLSFYQVNPVQT 291
Query: 286 DILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
++L K +Y +V DLY G G I L L ++K + V VE+ V
Sbjct: 292 ELLYNKALEYAGLTGEETVFDLYCGIGTISLFL--SQKAKKVYGVEV-----------VE 338
Query: 344 RLPKSVDGNISWHNADNSIEPLSWLVG---------------SDVLVVDPPRKGLDSSLV 388
+ N + DN + ++VG +DV+VVDPPRKG D ++
Sbjct: 339 DAIRDAQENAKLNGVDN----VEFIVGEAEKIIPDMYDKGIRADVVVVDPPRKGCDGVVL 394
Query: 389 HALQSIGSAER 399
L ++ S ER
Sbjct: 395 DTLVNM-SPER 404
>gi|322385303|ref|ZP_08058948.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus cristatus
ATCC 51100]
gi|417922035|ref|ZP_12565525.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
cristatus ATCC 51100]
gi|321270562|gb|EFX53477.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus cristatus
ATCC 51100]
gi|342833920|gb|EGU68200.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
cristatus ATCC 51100]
Length = 453
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 136/297 (45%), Gaps = 36/297 (12%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A++ VR + G +++ +H+++ I P I+ + +R ++ ++P
Sbjct: 125 AYRNKAQVPVRRVNGQLETGFFRKNSHDLLPIEDFYIQDPIIDQVIVFVRDLLRRFALKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE + TG +R +L + +G++ + LV N ++E L E
Sbjct: 185 YDEKEGTGLIR-----------NLVVRRGHNSGEIMVILVTNR-----SKIFRVEQLIE- 227
Query: 219 LWRNGGSRSREHY--IHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
R E + I S+ N N IFG +R L G+ +++ G +A +
Sbjct: 228 -------RLTEAFPAIKSIMQNINDQPGNAIFGREFRTLYGQDFITDSMLGKQFQIAAPA 280
Query: 277 FGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q NT + L + + + V D Y+G G IGLSLA + + V VE+ E+
Sbjct: 281 FYQVNTEMAEKLYQTAFDFADFKKEDIVLDAYSGIGTIGLSLAD--RVQQVYGVEVIPEA 338
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLV 388
+ ++ + L + A+ +I+ +WL V +DV++VDPPRKGL S +
Sbjct: 339 VENSQRN-AELNGITSASYVCAPAEKAIQ--TWLNQGVKADVILVDPPRKGLTESFI 392
>gi|307708648|ref|ZP_07645111.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
NCTC 12261]
gi|307615222|gb|EFN94432.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
NCTC 12261]
Length = 459
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/302 (24%), Positives = 139/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ V LR ++ +++PY
Sbjct: 129 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFFIQDPVIDEVVVALRDLLRRYDLKPY 188
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE ++ G +R +L + +G++ + LV P +++ L E L
Sbjct: 189 DEKEQAGLIR-----------NLVVRRGHYSGQIMVILVTTR-----PKVFRVDQLIEQL 232
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G + +A +F Q
Sbjct: 233 IKQFPD------ITSVMQNVNDQNTNAIFGKEWRTLYGQDYITDQMLGTNYQIAGPAFYQ 286
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 287 VNTEMAEKLYQTAIDFAELKEDDVVIDAYSGIGTIGLSV--AKHVKEVYGVEVIPEAVEN 344
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K ++L + + A+N+++ +WL + +++VDPPRKGL S + A
Sbjct: 345 SKKN-AQLNNISNAHYVCDTAENAMK--NWLKDGIQPSLILVDPPRKGLTESFIKASSQT 401
Query: 395 GS 396
G+
Sbjct: 402 GA 403
>gi|255657345|ref|ZP_05402754.1| putative RNA methyltransferase [Clostridium difficile QCD-23m63]
Length = 453
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 90/362 (24%), Positives = 155/362 (42%), Gaps = 51/362 (14%)
Query: 56 HFQSCSGCT---HEFNLHRPIIVDEATDFFKSIGLLD--FTFDSCRL---YGWRCRAKLA 107
+ + C GC ++N + +E IG L+ D+ + Y +R +A+
Sbjct: 75 NLRDCGGCQIQDLDYNKQLEMKTNEVKQVLSRIGKLEDVEVHDTIGMDNPYRYRNKAQFP 134
Query: 108 VRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGD 167
++ + P+IG Y++ TH+V+ C H + V++++ I+ V YDE TG
Sbjct: 135 IQKNNGVPIIGFYKKKTHDVISTEKCVIQHEINDKIVKIIKTYIRAYKVSIYDEKTHTGL 194
Query: 168 LRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRS 227
+R++ + + +V + LV N K P L+ LA L N
Sbjct: 195 IRHLVTKIG-----------FTTKEVMVVLVANGN--KLP---YLKELASVLKENIPG-- 236
Query: 228 REHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDI 287
++ N N I G + G+ + +G + ++P SF Q N +
Sbjct: 237 ----FKTLVVNVNQKDTNAILGKENIVIYGDGKINDYIGDLVFEISPLSFFQVNPVQTKV 292
Query: 288 LLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRL 345
L K +Y +V D+Y G G I L L A+K + V +EI ++ + K ++L
Sbjct: 293 LYDKALEYADLNETDTVFDIYCGIGTISLFL--AQKAKKVYGIEIIDDA-IKDAKINAKL 349
Query: 346 PKSVDGNISWHNAD------NSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHALQSIGSA 397
+ HNA+ I P + G ++V+VVDPPRKG D ++ + S+ S
Sbjct: 350 N-------NMHNAEFYVGKAEEIVPKMYREGKTANVVVVDPPRKGCDEKVLETIVSM-SP 401
Query: 398 ER 399
ER
Sbjct: 402 ER 403
>gi|452990796|emb|CCQ97976.1| Uncharacterized RNA methyltransferase CA_C0523 [Clostridium
ultunense Esp]
Length = 482
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 84/363 (23%), Positives = 156/363 (42%), Gaps = 58/363 (15%)
Query: 53 QCPHFQSCSGCT-HEFNLHRPI-----IVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKL 106
+C F C GC + ++ + IV+ + I + Y +R R K
Sbjct: 94 KCEFFPQCDGCQLQNLDYYKQLEFKKNIVENNLERIGKINNVVVKDTIGMEYPFRYRNKA 153
Query: 107 AVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTG 166
+ + IG Y+ GTH++V + + ++ + L+++ +K+ VE YD ++ G
Sbjct: 154 EFK-VEKNYKIGYYKRGTHDIVPVDKSIIQNKMVDDILILIKEYMKKYKVEGYDRKNKKG 212
Query: 167 DLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSR 226
+ + + T YN ++ +V ++ E P ++L + F + +
Sbjct: 213 IIMNLLIRTTKYNKAM--------------VVIVTKCENLPYKNELIKMLTFPDKRVSNI 258
Query: 227 SREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFD 286
S + I S++ N + + +V+ G + L GE + +G ++P SF Q N +
Sbjct: 259 S-SNAIVSIYQNVKKNDTSVVLGAKDIKLYGEDRILDYIGEYKFLISPKSFFQINPVQTE 317
Query: 287 ILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR 344
+L K+ +Y+ ++ DLY G G I SL ++ + V VEI KE+
Sbjct: 318 VLYDKVVEYLSLNGNETIADLYCGIGTI--SLFISKYAKKVYGVEIVKEA---------- 365
Query: 345 LPKSVDGNISWHNAD-NSIEPLSWLVGS---------------DVLVVDPPRKGLDSSLV 388
D N N D N + + +++G D +VVDPPRKGLD L+
Sbjct: 366 ---IEDAN---ENKDLNGVNNVEFILGKSEDILPKLNKKGIKLDAIVVDPPRKGLDKLLI 419
Query: 389 HAL 391
+++
Sbjct: 420 NSI 422
>gi|383328968|ref|YP_005354852.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecium
Aus0004]
gi|378938662|gb|AFC63734.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecium
Aus0004]
Length = 458
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 136/311 (43%), Gaps = 58/311 (18%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+G+R +A++ VR G Y++ +H++V I P I+ A++++R ++ V
Sbjct: 129 FGYRNKAQIPVRRIDGQLATGFYKKNSHDLVPIEDFYIQDPVIDQAIKVVRDILQRFQVR 188
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLA 216
Y+E+ G LR++ + Y+ + +V +R EK S ++ E++
Sbjct: 189 GYNEEKNEGQLRHIIIRRGHYSHEM-------------MVVLVTRKEKFFKSKEIAEAIH 235
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
E L + SV N NVI G++ + L G + + G ++ S
Sbjct: 236 EELPE----------VVSVIQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKS 285
Query: 277 FGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q NT+ + L + ++ V D Y+G G IGLSL A + V +E+
Sbjct: 286 FYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIGTIGLSL--ADRVDKVYGMEV---- 339
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPP 379
+P++++ + ++ +N IE + + VG V+VVDPP
Sbjct: 340 ----------IPEAIE-DAQFNALNNKIENVHYEVGKAEKVMKKWQEKGIKPSVIVVDPP 388
Query: 380 RKGLDSSLVHA 390
RKGLD + +
Sbjct: 389 RKGLDHHFIES 399
>gi|312868870|ref|ZP_07729056.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus oris
PB013-T2-3]
gi|311095610|gb|EFQ53868.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus oris
PB013-T2-3]
Length = 452
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 87/336 (25%), Positives = 153/336 (45%), Gaps = 46/336 (13%)
Query: 91 TFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQG 150
T R Y +R +A++ V+ G Y+ G+H +V I P+I+ A+ ++R
Sbjct: 121 TMGMERPYHYRNKAQVPVKLVRGKLETGFYKRGSHTLVPIEDFYIQDPKIDEAIVVVRDL 180
Query: 151 IKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSD 210
+++ +V PYDE G +R V A Y + +V + LV N++ + P ++
Sbjct: 181 LRKYHVMPYDERTGKGVIRTVM-----------ARRGYYSHEVMVVLVTNTK--RLPMAE 227
Query: 211 KLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDI 270
++ G + + S+ N N + G+ + L G+ + + + GID
Sbjct: 228 QIVD---------GIVAGVPEVKSIVQNVNDKRTNKLLGDTNKTLWGKDEIHDQLLGIDF 278
Query: 271 SLAPSSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCV 328
+++P SF Q N + + L + S V D Y G G I SLA A+ + V V
Sbjct: 279 AISPLSFYQVNPQQTERLYQTAIGNAGLDGSQTVIDAYCGIGTI--SLAVAKHAKQVYGV 336
Query: 329 EI-------NKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRK 381
EI K + + + V + K+ D W A ++P DV++VDPPRK
Sbjct: 337 EIVPAAIADAKHNGIKNAEFV--VGKAEDQFAKWQAA--GLKP-------DVVIVDPPRK 385
Query: 382 GLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKR 417
GL SL+ A +G +K +S + +++V++ +R
Sbjct: 386 GLAESLIEATGKMGP--QKVIYVSCNPATLVRDIQR 419
>gi|430841421|ref|ZP_19459340.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1007]
gi|431071674|ref|ZP_19494645.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1604]
gi|430494197|gb|ELA70447.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1007]
gi|430567307|gb|ELB06393.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1604]
Length = 457
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 136/311 (43%), Gaps = 58/311 (18%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+G+R +A++ VR G Y++ +H++V I P I+ A++++R ++ V
Sbjct: 129 FGYRNKAQIPVRRIDGQLATGFYKKNSHDLVPIEDFYIQDPVIDQAIKVVRDILQRFQVR 188
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLA 216
Y+E+ G LR++ + Y+ + +V +R EK S ++ E++
Sbjct: 189 GYNEEKNEGQLRHIIIRRGHYSHEM-------------MVVLVTRKEKFFKSKEIAEAIH 235
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
E L + SV N NVI G++ + L G + + G ++ S
Sbjct: 236 EELPE----------VVSVIQNINEEKTNVILGDKGKVLYGRDYIEDQLLGKTYRISAKS 285
Query: 277 FGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q NT+ + L + ++ V D Y+G G IGLSL A + V +E+
Sbjct: 286 FYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIGTIGLSL--ADRVDKVYGMEV---- 339
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPP 379
+P++++ + ++ +N IE + + VG V+VVDPP
Sbjct: 340 ----------IPEAIE-DAQFNALNNKIENVHYEVGKAEKVMKKWQEKGIKPSVIVVDPP 388
Query: 380 RKGLDSSLVHA 390
RKGLD + +
Sbjct: 389 RKGLDHHFIES 399
>gi|323343147|ref|ZP_08083378.1| 23S rRNA (uracil-5-)-methyltransferase [Erysipelothrix
rhusiopathiae ATCC 19414]
gi|322463211|gb|EFY08406.1| 23S rRNA (uracil-5-)-methyltransferase [Erysipelothrix
rhusiopathiae ATCC 19414]
Length = 456
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 141/320 (44%), Gaps = 34/320 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A + V+ G ++ GTH ++ + + ++ A+ ++R ++ +E Y
Sbjct: 132 YRNKATIPVQSVKGVLETGFFKRGTHELIPVENFYIQEEALDKAILVIRDLLRHFKIEAY 191
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
E + TG +R + + Y L + LV N E D + S+ E L
Sbjct: 192 QEANHTGLIRNIMVRQGHYTEEL-----------MVVLVTNG-TELPFEKDIVNSIVEAL 239
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ S+ N T NVI G+ R L GE + + + G ++ SF Q
Sbjct: 240 PKTV----------SIVQNINTKQTNVILGSEQRILFGEDLYHDQLLGKTFKISSKSFFQ 289
Query: 280 ANTRAFDILLRKLQKY--VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT+ ++L ++ + V V D Y G G I L+L A K + V VEI E +
Sbjct: 290 INTKQTEVLYQQAIEMAEVTSDDVVVDAYCGIGSITLNL--ADKAKFVYGVEI-VEDAII 346
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
K ++L + A+ I P +W+ + DVLVVDPPRKGLD + A +I
Sbjct: 347 MAKENAKLNHIENVQFEVGEAE-KIMP-TWVKEGIEIDVLVVDPPRKGLDPLFIDA--AI 402
Query: 395 GSAERKAKSLSESSSSMVKE 414
S R+ +S + S+ K+
Sbjct: 403 ASKPRRIVYVSCNPISLAKD 422
>gi|425054561|ref|ZP_18458066.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
505]
gi|403035513|gb|EJY46899.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
505]
Length = 457
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 136/311 (43%), Gaps = 58/311 (18%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+G+R +A++ VR G Y++ +H++V I P I+ A++++R ++ V
Sbjct: 129 FGYRNKAQIPVRRIDGQLATGFYKKNSHDLVPIEDFYIQDPVIDQAIKVVRDILQRFQVR 188
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLA 216
Y+E+ G LR++ + Y+ + +V +R EK S ++ E++
Sbjct: 189 GYNEEKNEGQLRHIIIRRGHYSHEM-------------MVVLVTRKEKFFKSKEIAEAIH 235
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
E L + SV N NVI G++ + L G + + G ++ S
Sbjct: 236 EELPE----------VVSVIQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKS 285
Query: 277 FGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q NT+ + L + ++ V D Y+G G IGLSL A + V +E+
Sbjct: 286 FYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIGTIGLSL--ADRVDKVYGMEV---- 339
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPP 379
+P++++ + ++ +N IE + + VG V+VVDPP
Sbjct: 340 ----------IPEAIE-DAQFNALNNKIENVHYEVGKAEKVMKKWQEKGIKPSVIVVDPP 388
Query: 380 RKGLDSSLVHA 390
RKGLD + +
Sbjct: 389 RKGLDHHFIES 399
>gi|430819927|ref|ZP_19438571.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0045]
gi|430833053|ref|ZP_19451066.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0679]
gi|430440130|gb|ELA50407.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0045]
gi|430486508|gb|ELA63344.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0679]
Length = 457
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 136/311 (43%), Gaps = 58/311 (18%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+G+R +A++ VR G Y++ +H++V I P I+ A++++R ++ V
Sbjct: 129 FGYRNKAQIPVRRIDGQLATGFYKKNSHDLVPIEDFYIQDPVIDQAIKVVRDILQRFQVR 188
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLA 216
Y+E+ G LR++ + Y+ + +V +R EK S ++ E++
Sbjct: 189 GYNEEKNEGQLRHIIIRRGHYSHEM-------------MVVLVTRKEKFFKSKEIAEAIH 235
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
E L + SV N NVI G++ + L G + + G ++ S
Sbjct: 236 EELPE----------VVSVIQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKS 285
Query: 277 FGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q NT+ + L + ++ V D Y+G G IGLSL A + V +E+
Sbjct: 286 FYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIGTIGLSL--ADRVDKVYGMEV---- 339
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPP 379
+P++++ + ++ +N IE + + VG V+VVDPP
Sbjct: 340 ----------IPEAIE-DAQFNALNNKIENVHYEVGKAEKVMKKWQEKGVKPSVIVVDPP 388
Query: 380 RKGLDSSLVHA 390
RKGLD + +
Sbjct: 389 RKGLDHHFIES 399
>gi|415898696|ref|ZP_11551419.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E4453]
gi|416136825|ref|ZP_11598763.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E4452]
gi|430827656|ref|ZP_19445788.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0269]
gi|430871313|ref|ZP_19483705.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1575]
gi|431146178|ref|ZP_19499075.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1620]
gi|431746215|ref|ZP_19535049.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2134]
gi|431781866|ref|ZP_19570006.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E6012]
gi|431785757|ref|ZP_19573780.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E6045]
gi|364089826|gb|EHM32474.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E4453]
gi|364091650|gb|EHM34094.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E4452]
gi|430484258|gb|ELA61279.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0269]
gi|430558011|gb|ELA97445.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1575]
gi|430575718|gb|ELB14415.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1620]
gi|430608984|gb|ELB46190.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2134]
gi|430646916|gb|ELB82377.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E6045]
gi|430648267|gb|ELB83674.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E6012]
Length = 457
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 136/311 (43%), Gaps = 58/311 (18%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+G+R +A++ VR G Y++ +H++V I P I+ A++++R ++ V
Sbjct: 129 FGYRNKAQIPVRRIDGQLATGFYKKNSHDLVPIEDFYIQDPVIDQAIKVVRDILQRFQVR 188
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLA 216
Y+E+ G LR++ + Y+ + +V +R EK S ++ E++
Sbjct: 189 GYNEEKNEGQLRHIIIRRGHYSHEM-------------MVVLVTRKEKFFKSKEIAEAIH 235
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
E L + SV N NVI G++ + L G + + G ++ S
Sbjct: 236 EELPE----------VVSVIQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKS 285
Query: 277 FGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q NT+ + L + ++ V D Y+G G IGLSL A + V +E+
Sbjct: 286 FYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIGTIGLSL--ADRVDKVYGMEV---- 339
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPP 379
+P++++ + ++ +N IE + + VG V+VVDPP
Sbjct: 340 ----------IPEAIE-DAQFNALNNKIENVHYEVGKAEKVMKKWQEKGVKPSVIVVDPP 388
Query: 380 RKGLDSSLVHA 390
RKGLD + +
Sbjct: 389 RKGLDHRFIES 399
>gi|334137487|ref|ZP_08510920.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp.
HGF7]
gi|333604941|gb|EGL16322.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp.
HGF7]
Length = 683
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/297 (26%), Positives = 132/297 (44%), Gaps = 30/297 (10%)
Query: 100 WRCRAKLAV-RGTSTSPLIG-LYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
WR R K V G L+G Y +G+H ++D+ C H + + +++ + L +
Sbjct: 344 WRYRNKAQVPFGEEQGGLVGGFYAQGSHRIIDMETCLIQHANNDEVIAKVKEIGRGLGIR 403
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
Y E+ G LR+V + V +R G++ + LV N + ++ + E
Sbjct: 404 AYQEETHEGLLRHVVVKVG-----------FRTGEIMVVLVTNGK--------EIPHVEE 444
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
++ + R+ + S+ N T NVIFG R L G ++ +G + +++ SF
Sbjct: 445 WIEK---IRATIPGVASICQNINTGRTNVIFGATTRVLWGHEVIYDYIGDVKFAISARSF 501
Query: 278 GQANTRAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q N + L K +Y G +V D Y G G I L L + + V VEI E+
Sbjct: 502 FQVNPVQTEALYGKALEYAGLTGGETVVDAYCGIGTISLFL--GKHAKKVYGVEIVPEA- 558
Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSI-EPLSWLVGSDVLVVDPPRKGLDSSLVHAL 391
+ K + L + + A++ + E V DV+VVDPPRKG D L+ +
Sbjct: 559 IEDAKRNAELNGIRNAEFAVGGAEDVLPEWQRAGVRPDVIVVDPPRKGCDERLLDTI 615
>gi|224476953|ref|YP_002634559.1| putative RNA methyltransferase [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222421560|emb|CAL28374.1| putative RNA methyltransferase [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 453
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 84/358 (23%), Positives = 156/358 (43%), Gaps = 53/358 (14%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIG-----LLDFTFDSCRLYGWRCRAK 105
C ++ C GC + ++ + ++ + F G +++ T + +R +++
Sbjct: 74 CIYYYKCGGCQLQHLAYDAQLEMKRNQVINLFHRKGKYTDTIINETIGMMNPWSYRNKSQ 133
Query: 106 LAV-RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+ V + ++G Y++ +H+++D+ C N + ++++ + + V Y+E +
Sbjct: 134 IPVGKNKDGKTVMGFYRQRSHDIIDMDECIIQDSIQNQLMVMIKELLNKYKVSIYNEKSK 193
Query: 165 TGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGG 224
G LR+V + V Y + +V + V N + K S +E L E +
Sbjct: 194 EGLLRHVIIRVG-----------YTSREVMVVFVTNGKKFKQA-SVIIEKLVEAVPN--- 238
Query: 225 SRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRA 284
I SV N S +NVI G + L G+ + +++ ++ ++ SF Q N+
Sbjct: 239 -------IKSVIQNINESHSNVIMGRHSKTLFGKDEIEDDLDSVEFKISDQSFYQINSEQ 291
Query: 285 FDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEI--------NKES 334
L K +Y +V D Y G G IGL + A K + V VE+ + +
Sbjct: 292 TVKLYNKALEYAQLNGDETVLDTYCGIGTIGLYM--AEKAKHVYGVEVVPAAIEDAKQNA 349
Query: 335 QL-SFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHAL 391
+L SF T K+ + + W AD I+P DV++VDPPRKG D + L
Sbjct: 350 ELNSFNNTTFVCGKAEEVIMQW-KAD-GIQP-------DVVMVDPPRKGCDEQFLKTL 398
>gi|69246826|ref|ZP_00604135.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium DO]
gi|257878457|ref|ZP_05658110.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,230,933]
gi|257882876|ref|ZP_05662529.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,231,502]
gi|257889346|ref|ZP_05668999.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,231,410]
gi|257894358|ref|ZP_05674011.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,231,408]
gi|260560044|ref|ZP_05832222.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium C68]
gi|261207467|ref|ZP_05922153.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium TC 6]
gi|289565878|ref|ZP_06446319.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
D344SRF]
gi|293559994|ref|ZP_06676502.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1162]
gi|294621045|ref|ZP_06700237.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
U0317]
gi|314937822|ref|ZP_07845139.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0133a04]
gi|314941632|ref|ZP_07848512.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0133C]
gi|314948879|ref|ZP_07852248.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0082]
gi|314951003|ref|ZP_07854070.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0133A]
gi|314993004|ref|ZP_07858400.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0133B]
gi|314996451|ref|ZP_07861494.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0133a01]
gi|389868786|ref|YP_006376209.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
faecium DO]
gi|424792359|ref|ZP_18218596.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
V689]
gi|424802717|ref|ZP_18228191.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
S447]
gi|424825925|ref|ZP_18250876.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R501]
gi|424852834|ref|ZP_18277219.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R499]
gi|424869056|ref|ZP_18292779.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R497]
gi|424938829|ref|ZP_18354593.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R496]
gi|424953589|ref|ZP_18368541.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R494]
gi|424958939|ref|ZP_18373554.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R446]
gi|424959216|ref|ZP_18373816.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1986]
gi|424965994|ref|ZP_18379866.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1190]
gi|424968735|ref|ZP_18382338.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1140]
gi|424971913|ref|ZP_18385311.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1139]
gi|424973229|ref|ZP_18386518.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1137]
gi|424978346|ref|ZP_18391278.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1123]
gi|424980424|ref|ZP_18393219.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV99]
gi|424985466|ref|ZP_18397940.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV69]
gi|424986780|ref|ZP_18399184.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV38]
gi|424989831|ref|ZP_18402083.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV26]
gi|424995108|ref|ZP_18407006.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV168]
gi|424998662|ref|ZP_18410333.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV165]
gi|425002335|ref|ZP_18413770.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV161]
gi|425005969|ref|ZP_18417166.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV102]
gi|425006523|ref|ZP_18417695.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV1]
gi|425010583|ref|ZP_18421523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E422]
gi|425015110|ref|ZP_18425751.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E417]
gi|425016864|ref|ZP_18427405.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
C621]
gi|425020530|ref|ZP_18430833.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
C497]
gi|425027872|ref|ZP_18435124.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
C1904]
gi|425030772|ref|ZP_18435933.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
515]
gi|425037137|ref|ZP_18441823.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
514]
gi|425038414|ref|ZP_18443030.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
513]
gi|425043380|ref|ZP_18447621.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
511]
gi|425044439|ref|ZP_18448600.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
510]
gi|425048848|ref|ZP_18452730.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
509]
gi|425051872|ref|ZP_18455512.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
506]
gi|425060283|ref|ZP_18463580.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
503]
gi|430830738|ref|ZP_19448794.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0333]
gi|430844004|ref|ZP_19461902.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1050]
gi|430846005|ref|ZP_19463870.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1133]
gi|430854850|ref|ZP_19472562.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1392]
gi|431541936|ref|ZP_19518165.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1731]
gi|431750083|ref|ZP_19538810.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2297]
gi|431754852|ref|ZP_19543512.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2883]
gi|431767227|ref|ZP_19555682.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1321]
gi|431770852|ref|ZP_19559248.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1644]
gi|431772307|ref|ZP_19560648.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2369]
gi|431775750|ref|ZP_19564020.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2560]
gi|431778818|ref|ZP_19567024.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E4389]
gi|68195059|gb|EAN09521.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium DO]
gi|257812685|gb|EEV41443.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,230,933]
gi|257818534|gb|EEV45862.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,231,502]
gi|257825706|gb|EEV52332.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,231,410]
gi|257830737|gb|EEV57344.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,231,408]
gi|260073879|gb|EEW62203.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium C68]
gi|260078358|gb|EEW66063.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium TC 6]
gi|289162338|gb|EFD10197.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
D344SRF]
gi|291599359|gb|EFF30384.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
U0317]
gi|291606082|gb|EFF35508.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1162]
gi|313589433|gb|EFR68278.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0133a01]
gi|313592527|gb|EFR71372.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0133B]
gi|313596858|gb|EFR75703.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0133A]
gi|313599523|gb|EFR78366.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0133C]
gi|313642853|gb|EFS07433.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0133a04]
gi|313644669|gb|EFS09249.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0082]
gi|388534035|gb|AFK59227.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
faecium DO]
gi|402917722|gb|EJX38472.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
V689]
gi|402919332|gb|EJX39941.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
S447]
gi|402924918|gb|EJX45101.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R501]
gi|402933029|gb|EJX52489.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R499]
gi|402936041|gb|EJX55240.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R496]
gi|402936111|gb|EJX55309.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R497]
gi|402938345|gb|EJX57360.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R446]
gi|402938710|gb|EJX57695.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R494]
gi|402942074|gb|EJX60708.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1190]
gi|402950836|gb|EJX68810.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1140]
gi|402951086|gb|EJX69038.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1986]
gi|402957038|gb|EJX74455.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1139]
gi|402959074|gb|EJX76352.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1137]
gi|402962108|gb|EJX79078.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1123]
gi|402965901|gb|EJX82582.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV69]
gi|402966541|gb|EJX83165.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV99]
gi|402975775|gb|EJX91708.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV38]
gi|402978158|gb|EJX93920.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV168]
gi|402981022|gb|EJX96578.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV26]
gi|402982361|gb|EJX97831.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV165]
gi|402983674|gb|EJX99053.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV161]
gi|402984488|gb|EJX99796.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV102]
gi|402996777|gb|EJY11141.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E417]
gi|402997055|gb|EJY11405.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV1]
gi|402999299|gb|EJY13496.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E422]
gi|403005116|gb|EJY18864.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
C1904]
gi|403005942|gb|EJY19619.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
C621]
gi|403009109|gb|EJY22577.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
C497]
gi|403012041|gb|EJY25309.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
514]
gi|403017002|gb|EJY29783.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
515]
gi|403019519|gb|EJY32115.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
513]
gi|403020106|gb|EJY32665.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
511]
gi|403029666|gb|EJY41409.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
509]
gi|403029899|gb|EJY41623.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
510]
gi|403036432|gb|EJY47781.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
506]
gi|403042789|gb|EJY53732.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
503]
gi|430482327|gb|ELA59445.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0333]
gi|430496594|gb|ELA72653.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1050]
gi|430539825|gb|ELA80064.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1133]
gi|430547729|gb|ELA87645.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1392]
gi|430592983|gb|ELB30970.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1731]
gi|430610556|gb|ELB47700.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2297]
gi|430618680|gb|ELB55521.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2883]
gi|430631235|gb|ELB67558.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1321]
gi|430634501|gb|ELB70620.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1644]
gi|430637995|gb|ELB73976.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2369]
gi|430642398|gb|ELB78176.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2560]
gi|430643479|gb|ELB79218.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E4389]
Length = 457
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 136/311 (43%), Gaps = 58/311 (18%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+G+R +A++ VR G Y++ +H++V I P I+ A++++R ++ V
Sbjct: 129 FGYRNKAQIPVRRIDGQLATGFYKKNSHDLVPIEDFYIQDPVIDQAIKVVRDILQRFQVR 188
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLA 216
Y+E+ G LR++ + Y+ + +V +R EK S ++ E++
Sbjct: 189 GYNEEKNEGQLRHIIIRRGHYSHEM-------------MVVLVTRKEKFFKSKEIAEAIH 235
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
E L + SV N NVI G++ + L G + + G ++ S
Sbjct: 236 EELPE----------VVSVIQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKS 285
Query: 277 FGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q NT+ + L + ++ V D Y+G G IGLSL A + V +E+
Sbjct: 286 FYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIGTIGLSL--ADRVDKVYGMEV---- 339
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPP 379
+P++++ + ++ +N IE + + VG V+VVDPP
Sbjct: 340 ----------IPEAIE-DAQFNALNNKIENVHYEVGKAEKVMKKWQEKGIKPSVIVVDPP 388
Query: 380 RKGLDSSLVHA 390
RKGLD + +
Sbjct: 389 RKGLDHHFIES 399
>gi|431586006|ref|ZP_19520521.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1861]
gi|431739987|ref|ZP_19528906.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2039]
gi|430593184|gb|ELB31170.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1861]
gi|430604114|gb|ELB41614.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2039]
Length = 457
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 136/311 (43%), Gaps = 58/311 (18%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+G+R +A++ VR G Y++ +H++V I P I+ A++++R ++ V
Sbjct: 129 FGYRNKAQIPVRRIDGQLATGFYKKNSHDLVPIEDFYIQDPVIDQAIKVVRDILQRFQVR 188
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLA 216
Y+E+ G LR++ + Y+ + +V +R EK S ++ E++
Sbjct: 189 GYNEEKNEGQLRHIIIRRGHYSHEM-------------MVVLVTRKEKFFKSKEIAEAIH 235
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
E L + SV N NVI G++ + L G + + G ++ S
Sbjct: 236 EELPE----------VVSVIQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKS 285
Query: 277 FGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q NT+ + L + ++ V D Y+G G IGLSL A + V +E+
Sbjct: 286 FYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIGTIGLSL--ADRVDKVYGMEV---- 339
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPP 379
+P++++ + ++ +N IE + + VG V+VVDPP
Sbjct: 340 ----------IPEAIE-DAQFNALNNKIENVHYEVGKAEKVMKKWQEKGIKPSVIVVDPP 388
Query: 380 RKGLDSSLVHA 390
RKGLD + +
Sbjct: 389 RKGLDHHFIES 399
>gi|431370170|ref|ZP_19509869.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1627]
gi|430583917|gb|ELB22275.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1627]
Length = 457
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 136/311 (43%), Gaps = 58/311 (18%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+G+R +A++ VR G Y++ +H++V I P I+ A++++R ++ V
Sbjct: 129 FGYRNKAQIPVRRIDGQLATGFYKKNSHDLVPIEDFYIQDPVIDQAIKVVRDILQRFQVR 188
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLA 216
Y+E+ G LR++ + Y+ + +V +R EK S ++ E++
Sbjct: 189 GYNEEKNEGQLRHIIIRRGHYSHEM-------------MVVLVTRKEKFFKSKEIAEAIH 235
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
E L + SV N NVI G++ + L G + + G ++ S
Sbjct: 236 EELPE----------VVSVIQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKS 285
Query: 277 FGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q NT+ + L + ++ V D Y+G G IGLSL A + V +E+
Sbjct: 286 FYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIGTIGLSL--ADRVYKVYGMEV---- 339
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPP 379
+P++++ + ++ +N IE + + VG V+VVDPP
Sbjct: 340 ----------IPEAIE-DAQFNALNNKIENVHYEVGKAEKVMKKWQEKGVKPSVIVVDPP 388
Query: 380 RKGLDSSLVHA 390
RKGLD + +
Sbjct: 389 RKGLDHHFIES 399
>gi|257898308|ref|ZP_05677961.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
Com15]
gi|257836220|gb|EEV61294.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
Com15]
Length = 457
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 136/311 (43%), Gaps = 58/311 (18%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+G+R +A++ VR G Y++ +H++V I P I+ A++++R ++ V
Sbjct: 129 FGYRNKAQIPVRRIDGQLATGFYKKNSHDLVPIEDFYIQDPVIDQAIKVVRDILQRFQVR 188
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLA 216
Y+E+ G LR++ + Y+ + +V +R EK S ++ E++
Sbjct: 189 GYNEEKNEGQLRHIIIRRGHYSHEM-------------MVVLVTRKEKFFKSKEIAEAIH 235
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
E L + SV N NVI G++ + L G + + G ++ S
Sbjct: 236 EELPE----------VVSVIQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKS 285
Query: 277 FGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q NT+ + L + ++ V D Y+G G IGLSL A + V +E+
Sbjct: 286 FYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIGTIGLSL--ADRVDKVYGMEV---- 339
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPP 379
+P++++ + ++ +N IE + + VG V+VVDPP
Sbjct: 340 ----------IPEAIE-DAQFNALNNKIENVHYEVGKAEKVMKKWQEKGIKPSVIVVDPP 388
Query: 380 RKGLDSSLVHA 390
RKGLD + +
Sbjct: 389 RKGLDHHFIES 399
>gi|431412486|ref|ZP_19511921.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1630]
gi|431759374|ref|ZP_19547988.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E3346]
gi|430589441|gb|ELB27569.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1630]
gi|430626174|gb|ELB62760.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E3346]
Length = 457
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 136/311 (43%), Gaps = 58/311 (18%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+G+R +A++ VR G Y++ +H++V I P I+ A++++R ++ V
Sbjct: 129 FGYRNKAQIPVRRIDGQLATGFYKKNSHDLVPIEDFYIQDPVIDQAIKVVRDILQRFQVR 188
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLA 216
Y+E+ G LR++ + Y+ + +V +R EK S ++ E++
Sbjct: 189 GYNEEKNEGQLRHIIIRRGHYSHEM-------------MVVLVTRKEKFFKSKEIAEAIH 235
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
E L + SV N NVI G++ + L G + + G ++ S
Sbjct: 236 EELPE----------VVSVIQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKS 285
Query: 277 FGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q NT+ + L + ++ V D Y+G G IGLSL A + V +E+
Sbjct: 286 FYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIGTIGLSL--ADRVDKVYGMEV---- 339
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPP 379
+P++++ + ++ +N IE + + VG V+VVDPP
Sbjct: 340 ----------IPEAIE-DAQFNALNNKIENVHYEVGKAEKVMKKWQEKGVKPSVIVVDPP 388
Query: 380 RKGLDSSLVHA 390
RKGLD + +
Sbjct: 389 RKGLDHHFIES 399
>gi|430822567|ref|ZP_19441145.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0120]
gi|430865127|ref|ZP_19480885.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1574]
gi|431743088|ref|ZP_19531969.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2071]
gi|431764148|ref|ZP_19552691.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E4215]
gi|430443144|gb|ELA53141.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0120]
gi|430553205|gb|ELA92906.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1574]
gi|430607452|gb|ELB44772.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2071]
gi|430631333|gb|ELB67655.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E4215]
Length = 457
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 136/311 (43%), Gaps = 58/311 (18%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+G+R +A++ VR G Y++ +H++V I P I+ A++++R ++ V
Sbjct: 129 FGYRNKAQIPVRRIDGQLATGFYKKNSHDLVPIEDFYIQDPVIDQAIKVVRDILQRFQVR 188
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLA 216
Y+E+ G LR++ + Y+ + +V +R EK S ++ E++
Sbjct: 189 GYNEEKNEGQLRHIIIRRGHYSHEM-------------MVVLVTRKEKFFKSKEIAEAIH 235
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
E L + SV N NVI G++ + L G + + G ++ S
Sbjct: 236 EELPE----------VVSVIQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKS 285
Query: 277 FGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q NT+ + L + ++ V D Y+G G IGLSL A + V +E+
Sbjct: 286 FYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIGTIGLSL--ADRVDKVYGMEV---- 339
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPP 379
+P++++ + ++ +N IE + + VG V+VVDPP
Sbjct: 340 ----------IPEAIE-DAQFNALNNKIENVHYEVGKAEKVMKKWQEKGVKPSVIVVDPP 388
Query: 380 RKGLDSSLVHA 390
RKGLD + +
Sbjct: 389 RKGLDHHFIES 399
>gi|425058909|ref|ZP_18462266.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
504]
gi|430835761|ref|ZP_19453748.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0680]
gi|430838138|ref|ZP_19456088.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0688]
gi|430849647|ref|ZP_19467420.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1185]
gi|430858103|ref|ZP_19475732.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1552]
gi|431497660|ref|ZP_19514814.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1634]
gi|403037029|gb|EJY48355.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
504]
gi|430489123|gb|ELA65756.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0680]
gi|430492418|gb|ELA68832.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0688]
gi|430537398|gb|ELA77741.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1185]
gi|430546055|gb|ELA86021.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1552]
gi|430588595|gb|ELB26787.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1634]
Length = 457
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 136/311 (43%), Gaps = 58/311 (18%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+G+R +A++ VR G Y++ +H++V I P I+ A++++R ++ V
Sbjct: 129 FGYRNKAQIPVRRIDGQLATGFYKKNSHDLVPIEDFYIQDPVIDQAIKVVRDILQRFQVR 188
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLA 216
Y+E+ G LR++ + Y+ + +V +R EK S ++ E++
Sbjct: 189 GYNEEKNEGQLRHIIIRRGHYSHEM-------------MVVLVTRKEKFFKSKEIAEAIH 235
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
E L + SV N NVI G++ + L G + + G ++ S
Sbjct: 236 EELPE----------VVSVIQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKS 285
Query: 277 FGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q NT+ + L + ++ V D Y+G G IGLSL A + V +E+
Sbjct: 286 FYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIGTIGLSL--ADRVDKVYGMEV---- 339
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPP 379
+P++++ + ++ +N IE + + VG V+VVDPP
Sbjct: 340 ----------IPEAIE-DAQFNALNNKIENVHYEVGKAEKVMKKWQEKGIKPSVIVVDPP 388
Query: 380 RKGLDSSLVHA 390
RKGLD + +
Sbjct: 389 RKGLDHHFIES 399
>gi|427713489|ref|YP_007062113.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. PCC
6312]
gi|427377618|gb|AFY61570.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. PCC
6312]
Length = 459
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/357 (22%), Positives = 154/357 (43%), Gaps = 45/357 (12%)
Query: 54 CPHFQSCSGC---THEFNLHRPIIVDEATDFFKSIGL-----LDFTFDSCRLYGWRCRAK 105
C C GC T ++L ++ + IG LD + + G+R +
Sbjct: 81 CIVADKCGGCQWQTVGYDLQIAAKHEQVKSALERIGKFQQVPLDSIIPAPQALGYRNKVS 140
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
+ G Y++G+H +V++ C R+N + ++ I++ Y+E D T
Sbjct: 141 YPLAFHKGQVQAGYYRKGSHRIVNLNQCPVQDVRLNPLLAGVKLDIQDQAWSIYNELDHT 200
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE--FLWRNG 223
G LR++ + + R G++ +TLV SD L L+E +W
Sbjct: 201 GALRHLGLRIGR-----------RTGEILLTLV--------TASDDLPELSEQAAVWM-- 239
Query: 224 GSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTR 283
+ + V N+ + N IFG + G+ WE G++ + +SF Q NT
Sbjct: 240 ---ATYPGLVGVCLNYNSQPGNQIFGPETELITGQASIWEQFAGLEFVINATSFFQVNTE 296
Query: 284 AFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKES--QLSFEKT 341
++L+ +++ + + T L A GV LSL A + R+V VEI+ + Q
Sbjct: 297 QAEVLVEMIKRELNLSQTETILDAFCGVGTLSLPLATQARAVVGVEISPATVAQAQINAQ 356
Query: 342 VSRLPKS--VDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGS 396
++++ + + G+++ + P D++++DPPRKG D + L+++ +
Sbjct: 357 INQITNAEFIVGDMATWIPAADLHP-------DIILLDPPRKGCDPQTLACLETLAA 406
>gi|418968126|ref|ZP_13519753.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
SK616]
gi|383341252|gb|EID19516.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
SK616]
Length = 453
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 137/302 (45%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFFIQDPVIDEVVVSLRDLLRRYDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P ++E L E L
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVILVTTR-----PKIFRVEQLIEQL 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
I SV N N IFG W+ L G+ + + G D +A +F Q
Sbjct: 230 IEQFPE------IVSVMQNINDQNTNAIFGKEWKTLYGQDYITDQMLGNDYQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTTIDFAELKEDDVAIDAYSGIGTIGLSV--AKHIKEVYGVEVIPEA-VE 340
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
K ++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 341 NSKKNAQLNNISNAHYVCDTAENAMK--TWLKEGIQPTVILVDPPRKGLTESFIKASSQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|306829492|ref|ZP_07462682.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus mitis ATCC
6249]
gi|304428578|gb|EFM31668.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus mitis ATCC
6249]
Length = 452
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 137/302 (45%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H ++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGILETGFFRKNSHYLMPLEDFFIQDPVIDQVVVALRDLLRRYDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + +V P ++E L E L
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHHSGQIMVIMVTTR-----PKVFRVEQLIEHL 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG W+ L G+ + + G D ++ +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDRNTNAIFGKEWKTLYGQDYITDQMLGNDFQISGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELREDDVVIDAYSGIGTIGLSV--AKHVKEVYGVEVIAEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K + L + + A+N+++ +W + V++VDPPRKGL S + A
Sbjct: 342 SQKNAA-LNNITNAHYVCDTAENAMK--NWFKEGIQPSVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|419766780|ref|ZP_14292957.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
SK579]
gi|383353820|gb|EID31423.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
SK579]
Length = 453
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 137/302 (45%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFFIQDPVIDEIVVGLRDLLRRYDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE ++ G +R +L + +G++ + LV P ++E L E L
Sbjct: 186 DEKEQAGLIR-----------NLVVRRGHYSGQIMVILVTTR-----PKVFRVEQLIEQL 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDFITDQMLGNDYQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + D Y+G G IGLS+ A+ + V VEI E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKEDDVAIDAYSGIGTIGLSV--AKHIKEVYGVEIIPEA-VE 340
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
K ++L + + A+N+++ +WL + +++VDPPRKGL S + A
Sbjct: 341 NSKKNAQLNNISNAHYVCDTAENAMK--NWLKDGIQPSLILVDPPRKGLTESFIKASSQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|293571847|ref|ZP_06682863.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E980]
gi|431737557|ref|ZP_19526510.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1972]
gi|291608101|gb|EFF37407.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E980]
gi|430598644|gb|ELB36379.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1972]
Length = 457
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/312 (25%), Positives = 140/312 (44%), Gaps = 60/312 (19%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+G+R +A++ VR G Y++ +H++V I P I+ A++++R ++ V
Sbjct: 129 FGYRNKAQIPVRRIDGQLATGFYKKNSHDLVPIEDFYIQDPVIDQAIKVVRDILQRFQVR 188
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLA 216
Y+E+ G LR++ + Y+ + +V +R EK S ++ E++
Sbjct: 189 GYNEEKNEGQLRHIIIRRGHYSHEM-------------MVVLVTRKEKFFKSKEIAEAIH 235
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWEN-VGGIDISLAPS 275
E L + SV N NVI G++ + +L + D+ E+ + G ++
Sbjct: 236 EELPE----------VVSVIQNINEEKTNVILGDKEK-VLYDRDYIEDQLLGKTYRISAK 284
Query: 276 SFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
SF Q NT+ + L + K+ V D Y+G G IGLSL A K V +E+
Sbjct: 285 SFYQVNTQQAEYLYQTAIKFAELDKKDIVIDAYSGIGTIGLSL--ADKVDKVYGMEV--- 339
Query: 334 SQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDP 378
+P++++ + ++ +N IE + + VG V+VVDP
Sbjct: 340 -----------IPEAIE-DAQFNALNNKIENVYYEVGKAEKVMKKWQEKGIKPSVIVVDP 387
Query: 379 PRKGLDSSLVHA 390
PRKGLD + +
Sbjct: 388 PRKGLDHHFIES 399
>gi|425738441|ref|ZP_18856704.1| RNA methyltransferase [Staphylococcus massiliensis S46]
gi|425479673|gb|EKU46846.1| RNA methyltransferase [Staphylococcus massiliensis S46]
Length = 455
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 85/361 (23%), Positives = 156/361 (43%), Gaps = 59/361 (16%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDFTFDSCRL-------YGWRCR 103
C ++ C GC + + + ++ + F G +F ++ + W R
Sbjct: 74 CVYYSKCGGCQLQHMNYESQLEMKFNQVYNLFTRKG----SFKDLKINQPIGMEHPWHYR 129
Query: 104 AKLAV-RGTSTSPLI--GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYD 160
K + GT S + G Y++ +H+++D+ C H NA + +++ + ELNV Y+
Sbjct: 130 NKSQIPVGTDQSGDVKMGFYRQRSHDIIDMDTCLIQHDVQNALMVSIKKWLNELNVSIYN 189
Query: 161 EDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLW 220
E ++G +R+V + + Y++ ++ I + N K ++L +
Sbjct: 190 EQLKSGLVRHV----------IIRASHYKDAQMVIFVT---------NGKKFKALDTLI- 229
Query: 221 RNGGSRSREHY--IHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
R HY + S+ N TS +NVI G + + + G++ +++ + + SF
Sbjct: 230 ----KRISTHYPSVKSIIHNINTSHSNVIMGKKSQVMYGDSVIEDDLDNLTFEIGDRSFY 285
Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLA-AARKCRSVKCVEINKESQ 335
Q N + L RK +Y + V D Y G G IGL +A A V+ VE E
Sbjct: 286 QINVTQTEKLYRKAIEYAGLTGNEIVIDAYCGIGTIGLYMAPHANHVYGVEVVESAIED- 344
Query: 336 LSFEKTVSRLPKSVDG--NISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHA 390
++L + +G NI + + W + DV++VDPPRKG D + ++
Sbjct: 345 -------AKLNRERNGIQNIDFEAGKAEEIIIKWQQEGLKPDVVMVDPPRKGCDQTFINT 397
Query: 391 L 391
L
Sbjct: 398 L 398
>gi|67923770|ref|ZP_00517234.1| tRNA (uracil-5-)-methyltransferase/TrmA [Crocosphaera watsonii WH
8501]
gi|67854397|gb|EAM49692.1| tRNA (uracil-5-)-methyltransferase/TrmA [Crocosphaera watsonii WH
8501]
Length = 455
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 138/301 (45%), Gaps = 34/301 (11%)
Query: 99 GWRCRAKLAVRGTSTSPL-IGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
G+R +A ++ ++T + G YQ TH ++++ C R+N + ++Q I+
Sbjct: 128 GYRNKATYPLKRSTTGTVQAGYYQRNTHQIINLNQCPIQDTRLNPILAEVKQDIQAQGWS 187
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
Y+E TG LR++ + + + G++ +TLV +S+ K PN + AE
Sbjct: 188 IYNEKTGTGKLRHLGLRIGK-----------KTGEIFLTLVSSSK--KIPN---FQEQAE 231
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
+W R + V N+ N IFG + +G E G + L+ +F
Sbjct: 232 -IW-----LQRYPNLVGVSINYNPHQGNKIFGLETFNYVGRHHLIEEFGQLHFQLSSDTF 285
Query: 278 GQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
Q NT A +ILL L + + T + A GV +L A+K +E N+ S
Sbjct: 286 FQVNTEAAEILLSVLLEKLSLTVEKTLIDAYCGVGTFTLPLAQKVAQAVGIENNQNSITQ 345
Query: 338 FEKTVSRLPKSVDG--NISWH--NADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQS 393
E ++G NI ++ N +N + L+ + D++V+DPPRKG D S++ L+
Sbjct: 346 AENNA-----KINGIDNIKFYTGNVENILPFLN--IFPDIVVLDPPRKGCDRSVIDTLRK 398
Query: 394 I 394
I
Sbjct: 399 I 399
>gi|419448670|ref|ZP_13988667.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 4075-00]
gi|379623728|gb|EHZ88361.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 4075-00]
Length = 543
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 137/302 (45%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFFIQDSVIDEVVVGLRDLLRRYDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE ++ G +R +L + +G++ + LV P ++E L E L
Sbjct: 186 DEKEQAGLIR-----------NLVVRRGHYSGQIMVILVTTR-----PKIFRVEQLIEQL 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGLSV--AKHVKEVYGVELIPEA-VE 340
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
K ++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 341 NSKKNAQLNNISNAHYVCDTAENAMK--NWLKDGIQPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|339634601|ref|YP_004726242.1| tRNA (uracil-5-)-methyltransferase-like protein [Weissella
koreensis KACC 15510]
gi|420162234|ref|ZP_14668994.1| 23S rRNA (uracil-5-)-methyltransferase [Weissella koreensis KCTC
3621]
gi|338854397|gb|AEJ23563.1| tRNA (uracil-5-)-methyltransferase related enzyme [Weissella
koreensis KACC 15510]
gi|394744668|gb|EJF33610.1| 23S rRNA (uracil-5-)-methyltransferase [Weissella koreensis KCTC
3621]
Length = 478
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 85/342 (24%), Positives = 145/342 (42%), Gaps = 75/342 (21%)
Query: 99 GWRCRAKLAVRGTSTSPL-IGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
G+R +A+ +R + +G+YQ +H +VD+P HP V +R I EL +
Sbjct: 152 GYRNKAQFPIRQMKDGTISVGMYQRNSHFLVDLPKVSTQHPATLKVVRKVRDIIDELEIP 211
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
Y+E TG ++ +L A G+VQ+T+V NSDK+ L+
Sbjct: 212 IYEEKKNTGIIK-----------TLVARVSESTGEVQLTIV--------TNSDKIPELST 252
Query: 218 FLWRNGGSRSREHYIH-------SVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDI 270
+ YIH S+ N ++I+G + + L G E + G
Sbjct: 253 LI----------AYIHDDLPEVVSIHQNINPDETSLIWGEKTKLLWGSNFITETINGRQF 302
Query: 271 SLAPSSFGQANTRAFDILLRKLQKY--VPYGASVTDLYAGAGVIGLSLAA-ARKCRSVKC 327
L+P +F Q N R L ++ + + + D Y+G G IG+SLA A + R +
Sbjct: 303 KLSPRAFLQLNPRQTARLYQEALSALDLTHADKLIDAYSGVGTIGISLADNAGEIRGMDT 362
Query: 328 VEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVG---------------SD 372
V P+S+ + + + DN++ + VG +D
Sbjct: 363 V-----------------PESI-ADANQNVLDNNVTNTKYFVGAAEDLIPQWTAAGWIAD 404
Query: 373 VLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKE 414
+VVDPPR GLD +L + + + A K +S + S++ ++
Sbjct: 405 AIVVDPPRTGLDINLRNTI--LAHAPEKFVYISCNESTLARD 444
>gi|399516075|ref|ZP_10757699.1| RNA methyltransferase, TrmA family [Leuconostoc pseudomesenteroides
4882]
gi|398649169|emb|CCJ65726.1| RNA methyltransferase, TrmA family [Leuconostoc pseudomesenteroides
4882]
Length = 465
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/302 (24%), Positives = 140/302 (46%), Gaps = 32/302 (10%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A++ V+ + G Y+ G+H +V + + P+++ AV + R +++ N+
Sbjct: 135 AYRNKAQVPVQMINGQLTTGFYRRGSHKLVPVDNFYIQDPKVDEAVRVTRDILRDYNLSA 194
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE + G +R++ A Y + ++ + +V N++ + P + E +A+
Sbjct: 195 YDEHTKKGVVRHIM-----------ARRGYYSHELMVVIVTNTK--RLPEA---EGIADK 238
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
L R++ + S N NVI G+ + G D + + G D + P+SF
Sbjct: 239 L------RAKLPELKSFIHNINNHDTNVIMGDWNETIWGADDIHDQLMGKDFVIGPNSFY 292
Query: 279 QANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q N + +L K + +V D Y+G G I LS+ A + + V VE+ + +
Sbjct: 293 QVNPQTTSVLYTLAAKKAGLKSTDTVVDAYSGIGTITLSV--ADQVKKVYGVEVIEGAVA 350
Query: 337 SFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQS 393
EK +D N+ + AD + W + +V+ VDPPRKGL S L+ A+ +
Sbjct: 351 DAEKNAHN--NHID-NVEFVLADAPEQMEKWADEGLKPNVVFVDPPRKGLTSELIEAVST 407
Query: 394 IG 395
+
Sbjct: 408 MA 409
>gi|323489776|ref|ZP_08095001.1| putative RNA methyltransferase [Planococcus donghaensis MPA1U2]
gi|323396514|gb|EGA89335.1| putative RNA methyltransferase [Planococcus donghaensis MPA1U2]
Length = 453
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 88/353 (24%), Positives = 147/353 (41%), Gaps = 44/353 (12%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYG--WRCRA 104
CP F +C GC + + ++ D T K L D + WR R
Sbjct: 74 CPVFDTCGGCQIQHLSYEGQMTFKQKLVRDAITRIGK---LPDVPVHPVKGMEDPWRYRN 130
Query: 105 KLAV-RGTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
K + GT ++ G YQ +H++ D C P +A + L++ + ++ ++PY+E
Sbjct: 131 KSQIPFGTQDGKVVAGFYQPRSHDIADTDTCLIQTPEADAIMVALKKSLIDMGIDPYEEA 190
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
G LR+V + R +I +V ++ +K P + + L +
Sbjct: 191 THRGMLRHVVV-------------RKARATGEIMVVLVTKKKKFPQAQRAIELIQ----- 232
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ + S+ N NVIFG+ L G+ + +G + ++ SF Q N
Sbjct: 233 ----ATVPEVTSIVQNINPEKTNVIFGDETLTLWGKDVIEDRIGDVRFEISARSFYQINP 288
Query: 283 RAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
++L + Y +V D Y G G I L L A++ + V VEI ++ + K
Sbjct: 289 VQTEVLYGQALAYAQLTGEETVIDAYCGIGTISLFL--AQRAKFVMGVEIVPQA-IEDAK 345
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHAL 391
+ L + A+ I P + G +DVLVVDPPRKG D L+H +
Sbjct: 346 RNAELNGLTNTLFEAGPAEQVI-PRWYKEGKKADVLVVDPPRKGCDEQLLHTI 397
>gi|429736141|ref|ZP_19270058.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sp. oral
taxon 138 str. F0429]
gi|429156047|gb|EKX98688.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sp. oral
taxon 138 str. F0429]
Length = 466
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 86/354 (24%), Positives = 143/354 (40%), Gaps = 65/354 (18%)
Query: 54 CPHFQSCSGC-----THEFNLH--RPIIVDEATDFFKSIGLL-DFTFDSCRLYGWRCRAK 105
C + C GC ++E LH R +VD T K +L + T + + +R + +
Sbjct: 86 CEIYDECGGCQLQHLSYEEQLHAKRAQVVDALTHIGKLPQILVNETLRADAPWNYRNKMQ 145
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
+ ++G + +G+H +++ +C N +R+ ++L++ Y+ED
Sbjct: 146 FPIGLHKGRLIVGCFAQGSHRIINTENCHIQRSANNELANTVREVAEKLHISVYNEDTHK 205
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGS 225
G LR++ V N ++ V + ++ P++ L
Sbjct: 206 GILRHIVGRVGRGN--------------ELMAVIVTATKQLPHAKDFVRLL--------- 242
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
R R ++ SV N QT NNVI G L G + +G ++ ++P SF Q NTR
Sbjct: 243 RERLPHLVSVHQNIQTYRNNVIMGRDTELLWGRPTILDTLGRLNFHISPRSFFQVNTRQA 302
Query: 286 DILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
+ L + Y +V D Y G G I L L A+K R V +EI + + L K
Sbjct: 303 ERLYEQALAYADLHGTETVIDAYCGTGTITLFL--AQKARKVYGIEIVQPAILDARKNAR 360
Query: 344 RLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPPRKG 382
DN ++ ++VG DV+VVDPPR G
Sbjct: 361 ---------------DNHVKNAEFIVGDATAVMPALYKQGIRPDVVVVDPPRAG 399
>gi|314936049|ref|ZP_07843398.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus hominis
subsp. hominis C80]
gi|313655866|gb|EFS19609.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus hominis
subsp. hominis C80]
Length = 454
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 89/358 (24%), Positives = 150/358 (41%), Gaps = 53/358 (14%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDFTF--DSCRL-YGWRCRAKLA 107
C +++ C GC + + + + + F L+ T D+ + + WR R K
Sbjct: 73 CIYYEKCGGCQLQHMSYESQLKMKKQQVVNLFHKKAKLEETVIHDTIGMDHPWRYRNKSQ 132
Query: 108 V---RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+ + + ++G Y++ +H+++D+ C + + ++Q + ELNV Y+E ++
Sbjct: 133 LPVGKDKNNKTIMGYYRQRSHDIIDMDSCLIQDEKQQELMNDIKQWLNELNVSIYNEKNK 192
Query: 165 TGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGG 224
G LR+V + + Y +V I V N K E+L
Sbjct: 193 KGLLRHVVIRTSHY-----------TNEVMIIFVTNCSKFKEA-----ETLVH------- 229
Query: 225 SRSREHY--IHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
R E Y I S+ N S +NVI G + L G+ + + ++ SF Q N+
Sbjct: 230 -RLTEVYPNITSIKQNINNSHSNVIMGKQSMTLYGKDKITDQLSETIFEISDQSFYQINS 288
Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLA-AARKCRSVKCV----EINKESQ 335
+ L +K Y + V D Y G G IGL +A A+ V+ V + K++
Sbjct: 289 VQTEKLYQKAIDYAQLSGNEIVLDTYCGIGTIGLYMAPVAKHVYGVEIVPSAIQDAKQNA 348
Query: 336 L--SFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHAL 391
L F+ T K+ + I W IEP DV++VDPPRKG D + L
Sbjct: 349 LINHFDNTTFECGKAEEVIIEW--KQKGIEP-------DVIMVDPPRKGCDQVFIETL 397
>gi|421277318|ref|ZP_15728138.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
SPAR10]
gi|395876599|gb|EJG87675.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
SPAR10]
Length = 455
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/325 (24%), Positives = 144/325 (44%), Gaps = 36/325 (11%)
Query: 81 FFKSIGLLDF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAH 136
+K G++D TF +R +A++ VR + G +++ +H+++ +
Sbjct: 103 LYKIAGIMDIEVADTFGMKNPIKYRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFYIQ 162
Query: 137 HPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQIT 196
P I+ + LR ++ +++PYDE + +G +R +L + +G++ +
Sbjct: 163 DPVIDQVIVALRDLLRRYDLKPYDEKEHSGLIR-----------NLVVRRGHHSGQIMVI 211
Query: 197 LVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLL 256
LV P ++E L E + + I SV N N IFG WR L
Sbjct: 212 LVTTR-----PKIFRVEQLIEQVIKQFPE------IVSVMQNINDQNTNAIFGKEWRVLY 260
Query: 257 GETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGL 314
G+ + + G ++ +F Q NT + L + + V D Y+G G IGL
Sbjct: 261 GQDYITDQMLGNSFQISGPAFYQVNTEMAEKLYQTAIDFAGLSEDDVVIDAYSGIGTIGL 320
Query: 315 SLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGS 371
S+ A+ + V VE+ E+ + +K + L + + A+N+++ +WL +
Sbjct: 321 SV--AKHVKEVYGVEVIPEAVENSQKN-AELNGITNAHYVCDTAENAMK--NWLKEGIQP 375
Query: 372 DVLVVDPPRKGLDSSLVHALQSIGS 396
++VDPPRKGL S + A G+
Sbjct: 376 TAILVDPPRKGLTESFIKASAQTGA 400
>gi|331001672|ref|ZP_08325195.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae oral
taxon 107 str. F0167]
gi|330413393|gb|EGG92760.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae oral
taxon 107 str. F0167]
Length = 394
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 81/349 (23%), Positives = 150/349 (42%), Gaps = 39/349 (11%)
Query: 53 QCPHFQSCSGCTH---EFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVR 109
+C + C GC + +N H ++ A K G D Y +R + AV
Sbjct: 17 KCAVAKKCGGCDYINSPYNKHVKEKLELANKLIKKYGKFDGIISMSNPYHYRNKVS-AVF 75
Query: 110 GTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDL 168
G +I G Y++ +H VVD C + +A ++ +++ ++ YDED G L
Sbjct: 76 GFENKKIIAGTYEKNSHRVVDTKSCLIEDKKASAIIQTIKKMCISFKIKAYDEDSGFGFL 135
Query: 169 RYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSR 228
R+V + V ++G++ + LV + N PN + + R
Sbjct: 136 RHVLIRVGK-----------KSGQIMVVLV--TSNVIFPNKNAFIKVL---------RGE 173
Query: 229 EHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDIL 288
I ++ N +++ G+R + G+ + + G+ ++P SF Q N + L
Sbjct: 174 HPEITTIVQNVNNKNTSMVLGDREIVMYGKGYITDELCGLTFKISPKSFYQVNREQTEKL 233
Query: 289 LRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLP 346
+ +Y + D Y+G G IG L A++ + V VE+NK++ + ++
Sbjct: 234 YSQAIEYAGLEGDEVLLDAYSGIGTIG--LIASKSVKEVISVELNKDAH---KDAITNAK 288
Query: 347 KSVDGNISWHNADNS--IEPLSWLVGS--DVLVVDPPRKGLDSSLVHAL 391
+ N+ ++NAD + I L+ G DV+++DPPR G + A+
Sbjct: 289 INNIKNVKFYNADATAFINDLAA-AGEKIDVVILDPPRTGSTEEFIAAV 336
>gi|417916046|ref|ZP_12559638.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
bv. 2 str. SK95]
gi|342831353|gb|EGU65670.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
bv. 2 str. SK95]
Length = 455
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 136/302 (45%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFFIQDPVIDQVVVALRDLLRRYDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + G++ + LV P ++E L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYTGQIMVILVTTR-----PKVFRVEQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG W+ L G+ + + G D +A SF Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWKTLYGQDYITDQMLGNDFQIAGPSFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT+ + L + + V D Y+G G IG L A + V VE+ E+ +
Sbjct: 284 VNTQMAEKLYQTAIDFAELRKDDVVIDAYSGIGTIG--LLVAEHVKEVYGVEVIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K + L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 342 SKKN-AVLNNITNAHYVCDTAENAMK--NWLKEGIHPTVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|387783742|ref|YP_006069825.1| tRNA methyltransferase, TrmA family [Streptococcus salivarius
JIM8777]
gi|338744624|emb|CCB94990.1| tRNA methyltransferase, TrmA family [Streptococcus salivarius
JIM8777]
Length = 453
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 88/363 (24%), Positives = 158/363 (43%), Gaps = 45/363 (12%)
Query: 65 HEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGLY 120
+ R +VD + +K+ G+ D T Y +R +A++ VR G Y
Sbjct: 90 EQLKFKRKQVVD---NLYKTAGISDVEVAETLGMETPYAYRNKAQVPVRRVKGQLETGFY 146
Query: 121 QEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNT 180
++ +H+++ I I+ + +R ++ +++PYDE ++TG +R++ + Y+
Sbjct: 147 RKNSHDLIPIEDFLIQDKEIDKLIVFVRDLLRRYDLKPYDEKEQTGLIRHLVVRRGHYSG 206
Query: 181 SLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQ 240
Q+ LV+ + K D++ + + N + S+ N
Sbjct: 207 -------------QMMLVFVTTRPKIFRIDQIIAKITEAFPN---------VVSIIQNIN 244
Query: 241 TSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYV-PYG 299
N IFG +R L G+ + + G D ++ SF Q NT + L + + P
Sbjct: 245 DKNTNAIFGKEFRTLYGQDTITDRMLGNDYEISAQSFYQVNTEMAEKLYQTAIDFSDPNS 304
Query: 300 AS-VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNA 358
S V D Y+G G IGLS A++ V VE+ + + +K R +G + H
Sbjct: 305 DSIVIDAYSGIGTIGLSF--AKQVEEVYGVEVIETAVEDAKKNAER-----NGITNAHYV 357
Query: 359 DNSIE--PLSWL---VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVK 413
+S E W + DV++VDPPRKGL S + A S+ K +S + ++M +
Sbjct: 358 ADSAENAMAKWSKDGIKPDVIIVDPPRKGLTESFIKA--SVAMQPEKITYVSCNPATMAR 415
Query: 414 EEK 416
+ K
Sbjct: 416 DIK 418
>gi|433449204|ref|ZP_20412068.1| tRNA (uracil-5-)-methyltransferase-like protein [Weissella ceti
NC36]
gi|429538718|gb|ELA06756.1| tRNA (uracil-5-)-methyltransferase-like protein [Weissella ceti
NC36]
Length = 455
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 143/306 (46%), Gaps = 48/306 (15%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+G+R +A++ R + G Y+ G+H +V+I P+I+ A+ ++R +++ + E
Sbjct: 127 WGYRNKAQIPTREINGLLTTGFYRRGSHRLVEIEDFLIQDPKIDEAILVVRDILRKYHTE 186
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
Y+E+ G +R + + Y+ ++ +V +R++K P LAE
Sbjct: 187 AYNEEIHKGTIRNIMVRRGYYSH-------------EMMVVLVTRSKKLP-------LAE 226
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
+ ++ R+ + S+ N NVI G + L G++ + + G ++ P+SF
Sbjct: 227 VIVQD--IRAALPEVKSIVQNVNQEKTNVIMGEKNNILWGKSTIKDQLLGKTFAIGPNSF 284
Query: 278 GQAN----TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEI--- 330
Q N R +++ +K + + +V D Y+G G I SLA A + + V VEI
Sbjct: 285 YQVNPQMTERLYEMAAQKAE--LKSTDTVIDAYSGIGTI--SLAIADQVKQVIGVEIVAG 340
Query: 331 -----NKESQLSFEKTVS-RLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLD 384
+ + ++ K V L K+ + + W +A+ V DV+ VDPPRKGL
Sbjct: 341 AVDDAKRNADINNIKNVKFELGKAEEKMVEWQDAE---------VAPDVIFVDPPRKGLT 391
Query: 385 SSLVHA 390
L+ A
Sbjct: 392 EELIVA 397
>gi|373468725|ref|ZP_09559960.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium oral taxon 082 str. F0431]
gi|371765735|gb|EHO54040.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium oral taxon 082 str. F0431]
Length = 392
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/350 (21%), Positives = 149/350 (42%), Gaps = 39/350 (11%)
Query: 52 LQCPHFQSCSGCTH---EFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAV 108
L+C + C GC + ++ H +++A K G D Y +R +
Sbjct: 16 LKCSVAKKCGGCDYINSPYDKHVKEKLEKANSLIKKYGKFDGIVSMDNPYHYRNKVSAVF 75
Query: 109 RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDL 168
+ + G Y++ +H VVD +C + ++ ++ +++ ++ YDED G L
Sbjct: 76 SFENKKIIAGTYEKNSHRVVDTKNCLIEDEKASSIIQTIKKMCVSFKIKAYDEDSGYGFL 135
Query: 169 RYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSR 228
R+V + V ++G++ + LV + N PN + + R
Sbjct: 136 RHVLIRVGK-----------KSGQIMVVLV--TSNVIFPNKNAFIKVL---------RGE 173
Query: 229 EHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDIL 288
I ++ N +++ G+R + G+ + + G+ ++P SF Q N + L
Sbjct: 174 HPEITTIVQNINNKNTSMVLGDREIVMYGKGYITDELCGLTFKISPKSFYQVNRDQTEKL 233
Query: 289 LRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLP 346
+ +Y + D Y+G G IG L A++ + V VE+NK++ + V+
Sbjct: 234 YSQAIEYANLNGDEVLLDAYSGIGTIG--LIASKSVKEVISVELNKDAH---KDAVTNAK 288
Query: 347 KSVDGNISWHNAD-----NSIEPLSWLVGSDVLVVDPPRKGLDSSLVHAL 391
+ N+ ++NAD N + + + DV+++DPPR G + A+
Sbjct: 289 INNIKNVKFYNADATAFINDLAAANEKI--DVVILDPPRTGSTEEFIAAV 336
>gi|339624910|ref|ZP_08660699.1| tRNA (uracil-5-)-methyltransferase related enzyme [Fructobacillus
fructosus KCTC 3544]
Length = 482
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 97/414 (23%), Positives = 171/414 (41%), Gaps = 87/414 (21%)
Query: 11 PSPVITCRVS----------LGAVRNPPPPAPPSSLPLDPPAANLPSLTCALQCPHFQSC 60
P V+T +V+ + VR P +P +P DP A L + H
Sbjct: 68 PGEVVTAKVTKVTDKYLEAKIVTVREP---SPDRVVPEDPAA----DLVGGFELAHLSYP 120
Query: 61 SGCTHEFNLHRPIIVDEATDF----FKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPL 116
+ + + +IV F F+ I +LD T +R +A L +R
Sbjct: 121 A----QLAFKKDLIVQALEKFQPKGFQQIQILD-TLGMANPTHYRNKASLPIRKLKGQLT 175
Query: 117 IGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVT 176
IGLY+ GTH++VD+P PR + L Q + + ++ Y+E + G V+ +
Sbjct: 176 IGLYKRGTHDLVDLPEMATQDPRTLKIIRHLGQILDKHSLSFYNEKTKKG---LVKTLIV 232
Query: 177 TYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVW 236
N G+ Q T+V + +++ P+ D + ++ E + ++
Sbjct: 233 RTN---------EEGQAQATIV--TTDDRLPDED-------LIIQDVQKELPE--VQGLF 272
Query: 237 ANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN----TRAFDILLRKL 292
N +N++I+G+ L G E++ G+ + +P +F Q N + +++ L L
Sbjct: 273 QNLNDGSNSLIWGDETWKLWGSDYLKEDILGLTFNFSPRAFLQLNYEQMEKTYEVALSAL 332
Query: 293 QKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGN 352
+ + D YAG G +GLS+A K + V+ +EI +P++V +
Sbjct: 333 D--LQSTDRLVDAYAGVGTLGLSMAY--KVKEVRGMEI--------------IPEAV-AD 373
Query: 353 ISWHNADNSIEPLSWLVGS---------------DVLVVDPPRKGLDSSLVHAL 391
+ +N I+ + VGS LVVDPPR GL+ L A+
Sbjct: 374 AELNAQENGIQNAHYEVGSADRVFKSWAKDGFKPTALVVDPPRPGLEVDLKRAI 427
>gi|323489809|ref|ZP_08095034.1| putative RNA methyltransferase [Planococcus donghaensis MPA1U2]
gi|323396547|gb|EGA89368.1| putative RNA methyltransferase [Planococcus donghaensis MPA1U2]
Length = 454
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 84/359 (23%), Positives = 149/359 (41%), Gaps = 51/359 (14%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGL-LDFTFDSCRLYGWRCRAK 105
CP +++C GC + + R ++V + K + ++ T + +R +++
Sbjct: 77 CPIYEACGGCQLQHMTYSQQLVEKRDLVVQALERYLKGTKVQVEETIGMEDPWRYRNKSQ 136
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
R + + GL+ EG+H ++DI C HP +++ ++EL + YD
Sbjct: 137 FQTRLKGSKVIAGLFAEGSHQLLDIDECIVQHPDTTVITNAVKRILEELKMPIYDGKTMK 196
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGS 225
G +R + + T NT G++Q+ LV +R++ LE L +
Sbjct: 197 GIIRTI-VVRTGVNT----------GEIQLVLV-TTRSKIPQKELLLERLKKI------- 237
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN---- 281
+ + S+ N +++FG+ L G+ E +G + L+ +F Q N
Sbjct: 238 ---DTNLVSIVQNINKEKTSLVFGDETITLFGKDTIHEELGELAFDLSARAFFQLNPTQT 294
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLA-AARKCRSVKCVEINKESQLSFEK 340
+ +D + R Q + +V D Y G G IGL LA +A++ R + + + + K
Sbjct: 295 VKLYDEIKRAAQ--LTGKETVVDAYCGVGTIGLWLADSAKEVRGMDVLHESVVDAKANAK 352
Query: 341 TVSRLPKSVDGNIS-----WHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSI 394
K V G W N P DVL VDPPR GL SL+ + +
Sbjct: 353 AQGYTAKYVTGTAEKWLELWSN--EGFVP-------DVLTVDPPRTGLADSLLQTILKV 402
>gi|257876913|ref|ZP_05656566.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
EC20]
gi|257811079|gb|EEV39899.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
EC20]
Length = 474
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/315 (24%), Positives = 136/315 (43%), Gaps = 58/315 (18%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+G+R +A++ V+ G Y++ +H +V I P I+ A+ +R ++ NV+
Sbjct: 147 FGYRNKAQIPVQKIHGKLTTGFYRKNSHTLVPIEDFYIQDPNIDQAIIKVRDILQRFNVK 206
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
Y+E+ G LR++ + + +G++ + LV + P K E +AE
Sbjct: 207 AYNEEAHEGFLRHIVV-----------RRGHHSGEMMVVLVT-----RKPKFFKGEEIAE 250
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
+ + SV N NVI G R L G++ + + G ++ SF
Sbjct: 251 VIHEEIPE------VVSVIQNINEEKTNVIMGEFERVLYGKSSIDDQLLGKTFQISAKSF 304
Query: 278 GQANTRAFDILLRKL--QKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q NT ++L + ++ V D YAG G IG+SL A + + V +E+
Sbjct: 305 YQVNTAQTEVLYQTAFEMAHLSENDIVVDAYAGIGTIGISL--ADRVKEVLGMEV----- 357
Query: 336 LSFEKTVSRLPKSVDGNISWHNAD-NSIEPLSWLVGS---------------DVLVVDPP 379
+P++V N + NA N +E + + +G V+ VDPP
Sbjct: 358 ---------IPEAV--NDAKANAKRNGVENVHYFIGKAEKIMPQWLREGIQPTVVFVDPP 406
Query: 380 RKGLDSSLVHALQSI 394
RKGLD+S + ++
Sbjct: 407 RKGLDASFIETTAAV 421
>gi|188590211|ref|YP_001922461.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
E3 str. Alaska E43]
gi|188500492|gb|ACD53628.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
E3 str. Alaska E43]
Length = 455
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 88/365 (24%), Positives = 157/365 (43%), Gaps = 60/365 (16%)
Query: 53 QCPHFQSCSGCT-HEFNLHRPIIV--DEATDFFKSIGLLDFTFDSCRL------YGWRCR 103
+C +++ C GC+ N + + + D + IG L L Y +R +
Sbjct: 71 KCSNYKRCGGCSIQHMNYKKQLDFKWERVKDCIEKIGGLSKDLVKYPLGMESNPYRYRNK 130
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
+L + + +IG Y +H+++D+ +C + + +Q IK+ N+EP D
Sbjct: 131 VQLPIGKINNEVVIGFYAPRSHDIIDLDYCLIQDKIADDVANITKQWIKKNNIEPATLDG 190
Query: 164 R---TGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLW 220
+ G L+++ + ++ +V + LV + N P+ D+ +++ L
Sbjct: 191 QFNPNGILKHLMI-----------RRGFKTDEVMVVLVATTSN--IPHLDEFKNI--ILE 235
Query: 221 RNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQA 280
G I S+ N NVI G L GE + +G +++P SF Q
Sbjct: 236 SIKG-------IKSIVLNINPKNTNVILGEECITLYGEDTIKDYIGEFKFNISPLSFFQV 288
Query: 281 NTRAFDILLRKLQKY--VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSF 338
N +IL K +Y + +V D Y G G I L L ++K + V VEI + + ++
Sbjct: 289 NPIQTEILYNKALEYAELTENETVFDAYCGTGTITLFL--SQKAKKVYGVEIIEPAIINA 346
Query: 339 EKTVSRLPKSVDGNISWHNADN-------SIEPLSWLVG----SDVLVVDPPRKGLDSSL 387
++ N +N DN S E + L+ +D++VVDPPRKG D L
Sbjct: 347 KE-----------NAKLNNVDNVEFFVGKSEEVIPTLINDGIKADIVVVDPPRKGCDIKL 395
Query: 388 VHALQ 392
+ A++
Sbjct: 396 LEAIE 400
>gi|365926192|ref|ZP_09448955.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus mali KCTC 3596 =
DSM 20444]
gi|420266948|ref|ZP_14769370.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus mali KCTC 3596 =
DSM 20444]
gi|394424254|gb|EJE97417.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus mali KCTC 3596 =
DSM 20444]
Length = 464
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 144/328 (43%), Gaps = 37/328 (11%)
Query: 74 IVDEATDFFKSIGLLDFTFDSC----RLYGWRCRAKLAVRGTSTSPLI-GLYQEGTHNVV 128
+V +A + FK G F S + +R +A+ VR TS ++ GLY+ GTH +V
Sbjct: 109 VVSQALEKFKPQGYQKFKLLSTIGMEHPFEYRNKAQFQVRKTSDGKVVAGLYKRGTHELV 168
Query: 129 DIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERY 188
D+P P + + + ++L YDE + +G ++ ++ E +
Sbjct: 169 DLPTFTTQRPLTMKVIRKICKFFEDLETPIYDERNNSGIIK-----------TIVVRESF 217
Query: 189 RNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIF 248
G+VQ+ + NS EK P K L E + N + S+ N ++I+
Sbjct: 218 STGEVQVVFITNS--EKLP---KKRLLLEKINNNLPE------VTSILQNINKGKTSLIW 266
Query: 249 GNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGAS--VTDLY 306
G + L G E +G ++ L+ +F Q N + +++K + G + + D Y
Sbjct: 267 GKSTKLLSGNEYITEKLGDVEFKLSARAFFQLNPYQTQKMYEEVKKALALGKNEKLVDAY 326
Query: 307 AGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS 366
G G IGL +A V+ ++I E+ + K + L K + + A++ I
Sbjct: 327 CGVGTIGLFVAD--DTNEVRGMDITPEA-IEDAKLNAELNKQKKFSFAVGKAEDLIP--E 381
Query: 367 WLVGS---DVLVVDPPRKGLDSSLVHAL 391
W D LVVDPPR GLD+ L+ +
Sbjct: 382 WQQNGFVFDALVVDPPRTGLDAKLIKTI 409
>gi|255308421|ref|ZP_05352592.1| putative RNA methyltransferase [Clostridium difficile ATCC 43255]
Length = 452
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 152/357 (42%), Gaps = 50/357 (14%)
Query: 56 HFQSCSGCT---HEFNLHRPIIVDEATDFFKSIGLLD--FTFDSCRL---YGWRCRAKLA 107
+ + C GC ++N + +E IG L+ D+ + Y +R +A+
Sbjct: 75 NLRDCGGCQIQDLDYNKQLEMKTNEVKQVLSRIGKLEDVEVHDTIGMDNPYRYRNKAQFP 134
Query: 108 VRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGD 167
++ + P+IG Y++ TH+V+ C H + V++++ I+ V YDE TG
Sbjct: 135 IQKNNGIPIIGFYKKKTHDVISTEKCVIQHEINDKIVKIIKTYIRAYKVSIYDEKTHTGL 194
Query: 168 LRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRS 227
+R+ L + +V + LV N K P L+ LA L N
Sbjct: 195 IRH-----------LVTKIGFTTKEVMVVLVANGN--KLP---YLKELASVLKENIPG-- 236
Query: 228 REHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDI 287
++ N N I G + G+ + +G + ++P SF Q N +
Sbjct: 237 ----FKTLVVNVNQKDTNAILGRENIVIYGDGKINDYIGDLVFEISPLSFFQVNPVQTKV 292
Query: 288 LLRKLQKYVPYG--ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRL 345
L K+ +Y +V D+Y G G I L L A+K + V +EI ++ + K ++L
Sbjct: 293 LYDKVLEYANLNDTDTVFDIYCGIGTISLFL--AQKAKKVYGIEIIDDA-IKDAKINAKL 349
Query: 346 PKSVDGNISWHNAD------NSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHALQSI 394
+ HNA+ I P + G ++V+VVDPPRKG D ++ + S+
Sbjct: 350 N-------NIHNAEFYVGKAEEIVPKMYREGKTANVVVVDPPRKGCDEKVLETIVSM 399
>gi|422759228|ref|ZP_16812990.1| Putative RNA methyltransferase [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
gi|322412063|gb|EFY02971.1| Putative RNA methyltransferase [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 452
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 83/344 (24%), Positives = 158/344 (45%), Gaps = 50/344 (14%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A++ VRG + G +++ +H++V I I+ + R+ + +V+P
Sbjct: 125 AYRNKAQVPVRGVNGQLETGFFRKHSHDLVPISDYYIQDKEIDRLINFTRELLHRFDVKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R++ + Y+ G++ + LV P +++ +
Sbjct: 185 YDEKEQTGLIRHIVVRRGHYS-----------GEMMLVLVTTR-----PKVFRVDQVI-- 226
Query: 219 LWRNGGSRSREHY--IHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
S+ E + + S+ N N IFG ++ L G+ +++ G D +++ S
Sbjct: 227 ------SKIVETFPEVVSIIQNINDKNTNAIFGKDFKRLYGKDTITDSMLGNDYAISAQS 280
Query: 277 FGQANTRAFDILLRKL-QKYVPYG-----ASVTDLYAGAGVIGLSLAAARKCRSVKCVEI 330
F Q NT ++ KL Q + + V D Y+G G IGLS A+ ++V VE+
Sbjct: 281 FYQVNT----VMAEKLYQTAIAFSDLSDDDIVIDAYSGIGTIGLSF--AKTVKAVYGVEV 334
Query: 331 NKESQLSFEKTVSRLPKSVDGNISWHNADNSIE--PLSWL---VGSDVLVVDPPRKGLDS 385
+ + ++ +R +G + H ++ E +W + V++VDPPRKGL
Sbjct: 335 IETAVKDAQQNAAR-----NGITNVHFVADTAENAMATWAKEGIKPSVILVDPPRKGLTE 389
Query: 386 SLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQ 429
S + A S+ +K +S + ++M ++ KR L K VQ
Sbjct: 390 SFIQA--SVAMGPQKITYVSCNPATMARDIKRYQDLGYKLTKVQ 431
>gi|416399377|ref|ZP_11686958.1| RNA methyltransferase, TrmA family [Crocosphaera watsonii WH 0003]
gi|357262403|gb|EHJ11536.1| RNA methyltransferase, TrmA family [Crocosphaera watsonii WH 0003]
Length = 455
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 138/301 (45%), Gaps = 34/301 (11%)
Query: 99 GWRCRAKLAVRGTSTSPL-IGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
G+R +A ++ ++T + G YQ TH ++++ C R+N + ++Q I+
Sbjct: 128 GYRNKATYPLKRSTTGTVQAGYYQRNTHQIINLNQCPIQDTRLNPILAEVKQDIQAQGWS 187
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
Y+E TG LR++ + + + G++ +TLV +S+ K PN + AE
Sbjct: 188 IYNEKTGTGKLRHLGLRIGK-----------KTGEIFLTLVSSSK--KIPN---FQEQAE 231
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
+W R + V N+ N IFG + +G E G + L+ +F
Sbjct: 232 -IW-----LQRYPNLVGVSINYNPHQGNKIFGLETFNYVGRHHLIEEFGQLHFQLSSDTF 285
Query: 278 GQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
Q NT A +ILL L + + T + A GV +L A+K +E N+ S
Sbjct: 286 FQVNTEAAEILLSVLLEKLSLTVEKTLIDAYCGVGTFTLPLAQKVAQAVGIENNQNSITQ 345
Query: 338 FEKTVSRLPKSVDG--NISWH--NADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQS 393
E ++G N+ ++ N +N + L+ + D++V+DPPRKG D S++ L+
Sbjct: 346 AENNA-----KINGIDNVKFYTGNVENILPFLN--IFPDIVVLDPPRKGCDRSVIDTLRK 398
Query: 394 I 394
I
Sbjct: 399 I 399
>gi|315924682|ref|ZP_07920899.1| 23S rRNA (uracil-5-)-methyltransferase [Pseudoramibacter
alactolyticus ATCC 23263]
gi|315621581|gb|EFV01545.1| 23S rRNA (uracil-5-)-methyltransferase [Pseudoramibacter
alactolyticus ATCC 23263]
Length = 458
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 129/289 (44%), Gaps = 43/289 (14%)
Query: 117 IGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVT 176
IG Y +G+H V+ I HC + + +L Q +K+ + Y ED TG+LR + +
Sbjct: 149 IGFYAKGSHQVIPIAHCLNQMTPNDDLILILNQWVKDSQIPIYREDSGTGNLRGILVRAN 208
Query: 177 TYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-----ESLAEFLWRNGGSRSREHY 231
R G + +TL+ ++ N+++L ESL+E +
Sbjct: 209 ------------RRGDIMVTLI--AKTLSGVNTERLARRLQESLSELV------------ 242
Query: 232 IHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRK 291
S N + N + G R + G E + G + ++P+SF Q NT + L R+
Sbjct: 243 --SFSININPNRGNRVLGEETRVIFGAPTISETLCGREFQISPASFFQVNTEQAEKLYRQ 300
Query: 292 LQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSV 349
+ +Y SV DLY G G IG+ +A + R V +E E+ ++ R ++
Sbjct: 301 VIRYANLTGQESVFDLYCGTGTIGICMAD--RARKVTGIEAVPEAIADAKENARR--NNI 356
Query: 350 DGNISWHNADNSI---EPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIG 395
D NI + + E L+ +DV+VVDPPRKG L+ + + G
Sbjct: 357 D-NIQFFCGRSEKIMSERLAAGDAADVVVVDPPRKGCARLLLETIVASG 404
>gi|358464975|ref|ZP_09174933.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. oral
taxon 058 str. F0407]
gi|357066504|gb|EHI76654.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. oral
taxon 058 str. F0407]
Length = 452
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 145/311 (46%), Gaps = 41/311 (13%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFFIQDPVIDDVVVALRDLLRRYDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E L
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVILVTTR-----PKVFRVDQLIEQL 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG W L G+ + + G D ++ +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWHTLYGQDYITDQMLGNDFQISGPAFYQ 283
Query: 280 ANTRAFDILLRKL-QKYVPYGA-----SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
NT I+ KL Q + + V D Y+G G IGLS+ A+ + V VE+ E
Sbjct: 284 VNT----IMAEKLYQTAIDFSELKSDDVVIDAYSGIGTIGLSV--AKHVKEVYGVEVIPE 337
Query: 334 SQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHA 390
+ + EK ++L + + A+N+++ +WL + +++VDPPRKGL S + A
Sbjct: 338 AVENSEKN-AQLNNISNAHYVCDTAENAMK--NWLKEGIQPSLILVDPPRKGLTESFIKA 394
Query: 391 LQSIGSAERKA 401
G A+R A
Sbjct: 395 SAQTG-ADRIA 404
>gi|284049068|ref|YP_003399407.1| RNA methyltransferase, TrmA family [Acidaminococcus fermentans DSM
20731]
gi|283953289|gb|ADB48092.1| RNA methyltransferase, TrmA family [Acidaminococcus fermentans DSM
20731]
Length = 458
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 90/359 (25%), Positives = 150/359 (41%), Gaps = 49/359 (13%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVD--EATDFFKSIGLLDFTFDSCRLYGWRCRA 104
CP + C GC + L R +VD E F + + + T + + +R +
Sbjct: 78 CPVYAQCGGCQLQHLSYPAQLALKRQTVVDAMERIGHFTKLSVQE-TLGAEDPWHYRNKM 136
Query: 105 KL-AVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
++ A +G + + IG Y +GTH V+D+ C N V+++R +++ + +ED
Sbjct: 137 QVPAAQGRNHTLAIGCYAQGTHRVIDVKDCLIQQQANNRIVQVVRSWMEKYRIPALEEDA 196
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNG 223
R G +R++ V + G+V LV N P L+ L L
Sbjct: 197 RRGIVRHIMGRVGV-----------QTGEVMAVLVTN-----EPQVPHLKDLTALL---- 236
Query: 224 GSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTR 283
R ++ N T NVI G + + + G + +G +++P SF Q NT
Sbjct: 237 --RQEIPGFTTLVQNLNTRHTNVIMGPKNKVIWGPGVIHDRLGKFTFTISPHSFFQVNTL 294
Query: 284 AFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLA-AARKCRSVKCVE--INKESQLSF 338
+ L +Y V D Y G G I L LA A++ ++ VE I Q +
Sbjct: 295 QAEKLYETALQYAALTGKEKVIDAYCGTGTITLFLAQKAKRALGIEIVEPAIRDARQNAR 354
Query: 339 EKTVSRLPKSVDGNISWHNADNSIE-PLSWLVGS--DVLVVDPPRKGLDSSLVHALQSI 394
+ VS N+ + D + E P GS DV+V+DPPR G + ++ A+ +
Sbjct: 355 DNQVS--------NVDFLCGDAAKEMPELVRQGSRPDVVVLDPPRAGCEQRVLEAIAKV 405
>gi|297617338|ref|YP_003702497.1| TrmA family RNA methyltransferase [Syntrophothermus lipocalidus DSM
12680]
gi|297145175|gb|ADI01932.1| RNA methyltransferase, TrmA family [Syntrophothermus lipocalidus
DSM 12680]
Length = 458
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 88/364 (24%), Positives = 148/364 (40%), Gaps = 56/364 (15%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRL----YGWRC 102
CP F C GC + + L R ++V K IG L+ R + +R
Sbjct: 78 CPVFGQCGGCQLQHIDYSRQLELKREVVVQA----LKRIGHLECEVLPVRGMDNPWHYRN 133
Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
+ + G ++ G++ V C P +N + L Q + E VE Y
Sbjct: 134 KGQFHAGKNDGRVFFGFFKPGSYQAVPARDCLLFSPAVNNLLGYLEQSLTESGVEVYH-- 191
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
+TGD R + + R + ++ V+ + +EKS NS L+ L E +
Sbjct: 192 PQTGDGRLRNLVI-----------RESSATGEMMAVFVTTHEKSLNSHFLQGLGEAFPQ- 239
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ SV+ N + + G ++R L G+ + + + + ++P SF Q N
Sbjct: 240 ---------LTSVYQNINPGRSPLALGPKFRLLSGKPEITDKIEHLSFEISPGSFFQVNR 290
Query: 283 RAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
++L R + ++ +V D Y+G G I L L A + + V VE N EK
Sbjct: 291 VQTELLYRIVSEFAELNGTETVLDAYSGVGTIALFL--AERAKKVIAVEEN-------EK 341
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS-------DVLVVDPPRKGLDSSLVHALQS 393
V+ K+ GN + + W+ + DV VVDPPR+GL+ + AL +
Sbjct: 342 AVADAQKNARGNGIKNVRFIAQRVEDWVTNAALDHERPDVAVVDPPRQGLNRGFLQALVT 401
Query: 394 IGSA 397
+ A
Sbjct: 402 MSPA 405
>gi|227877027|ref|ZP_03995119.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
crispatus JV-V01]
gi|256844662|ref|ZP_05550147.1| RNA methyltransferase [Lactobacillus crispatus 125-2-CHN]
gi|227863398|gb|EEJ70825.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
crispatus JV-V01]
gi|256613203|gb|EEU18407.1| RNA methyltransferase [Lactobacillus crispatus 125-2-CHN]
Length = 449
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 75/323 (23%), Positives = 150/323 (46%), Gaps = 39/323 (12%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + IG ++ +H++V + + P I+ + +R +++ + P
Sbjct: 123 GYRNKAQVPVREYNGQLEIGFFRRHSHDLVPLTNFFTTDPEIDRVLVAVRDVLRKYKIAP 182
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE + TG +RY L NG++ + LV SR + P
Sbjct: 183 YDEVNNTGIIRY-----------LDVRRSKANGEIMVILV--SRVKDFPQ---------- 219
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ S+ + + N+ NVI G + + G + +G + ++P SF
Sbjct: 220 MMGVAAEISQIPKVSGLVLNYNPKKTNVILGKKDYLVFGNDQITDQIGDLKFRISPQSFF 279
Query: 279 QANT----RAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
Q N+ R +D+ ++ Q + V D Y+G G IGLS+ A+ ++V+ +E+ +++
Sbjct: 280 QINSLQTPRLYDLAIK--QADLGSDDVVIDAYSGIGTIGLSV--AKHVKAVRGIEVVRDA 335
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ K + L ++ + I P W + +DV+ VDPPRKGL ++A
Sbjct: 336 -IKDAKDNAEL-NGIENAKYYLGKAEEIMP-RWAKKGMKTDVVFVDPPRKGLTPEFINA- 391
Query: 392 QSIGSAERKAKSLSESSSSMVKE 414
++ + +K +S + ++M+++
Sbjct: 392 -TVKTGPKKVVYISCNPATMIRD 413
>gi|417935684|ref|ZP_12579001.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus infantis
X]
gi|343402593|gb|EGV15098.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus infantis
X]
Length = 456
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 139/303 (45%), Gaps = 32/303 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ + LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFYIQDPVIDQVILELRDLLRRYDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P ++E L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHHSGQIMVILVTTR-----PKIFRVEQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N +N IFG WR L G+ + + G ++ +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNSNAIFGKEWRVLYGQDYIMDQMLGNSFQISGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELSEDDVVIDAYSGIGTIGLSV--AKHVKEVYGVEVIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K + L + + + A+N+++ SWL + ++VDPPRKGL S + A
Sbjct: 342 SQKN-AELNCITNAHYVCNTAENAMK--SWLKEGIQPTAILVDPPRKGLTESFIKASAQT 398
Query: 395 GSA 397
G+
Sbjct: 399 GAG 401
>gi|256850547|ref|ZP_05555973.1| RNA methyltransferase [Lactobacillus crispatus MV-1A-US]
gi|256712570|gb|EEU27565.1| RNA methyltransferase [Lactobacillus crispatus MV-1A-US]
Length = 451
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 75/323 (23%), Positives = 150/323 (46%), Gaps = 39/323 (12%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + IG ++ +H++V + + P I+ + +R +++ + P
Sbjct: 125 GYRNKAQVPVREYNGQLEIGFFRRHSHDLVPLTNFFTTDPEIDRVLVAVRDVLRKYKIAP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE + TG +RY L NG++ + LV SR + P
Sbjct: 185 YDEVNNTGIIRY-----------LDVRRSKANGEIMVILV--SRVKDFPQ---------- 221
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ S+ + + N+ NVI G + + G + +G + ++P SF
Sbjct: 222 MMGVAAEISQIPKVSGLVLNYNPKKTNVILGKKDYLVFGNDQITDQIGDLKFRISPQSFF 281
Query: 279 QANT----RAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
Q N+ R +D+ ++ Q + V D Y+G G IGLS+ A+ ++V+ +E+ +++
Sbjct: 282 QINSLQTPRLYDLAIK--QADLGSDDVVIDAYSGIGTIGLSV--AKHVKAVRGIEVVRDA 337
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ K + L ++ + I P W + +DV+ VDPPRKGL ++A
Sbjct: 338 -IKDAKDNAEL-NGIENAKYYLGKAEEIMP-RWAKKGMKTDVVFVDPPRKGLTPEFINA- 393
Query: 392 QSIGSAERKAKSLSESSSSMVKE 414
++ + +K +S + ++M+++
Sbjct: 394 -TVKTGPKKVVYISCNPATMIRD 415
>gi|420264205|ref|ZP_14766838.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus sp. C1]
gi|394768581|gb|EJF48487.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus sp. C1]
Length = 455
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 77/315 (24%), Positives = 136/315 (43%), Gaps = 58/315 (18%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+G+R +A++ V+ G Y++ +H +V I P I+ A+ +R ++ NV+
Sbjct: 128 FGYRNKAQIPVQKIHGELTTGFYRKNSHTLVPIEDFYIQDPNIDQAIIKVRDILQRFNVK 187
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
Y+E+ G LR++ + + +G++ + LV + P K E +AE
Sbjct: 188 AYNEEAHEGFLRHIVV-----------RRGHHSGEMMVVLVT-----RKPKFFKGEEIAE 231
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
+ + SV N NVI G R L G++ + + G ++ SF
Sbjct: 232 VIHEEIPE------VVSVIQNINEEKTNVIMGEFERVLYGKSSIDDQLLGKTFQISAKSF 285
Query: 278 GQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q NT ++L + + + V D YAG G IG+SL A + + V +E+
Sbjct: 286 YQVNTAQTEVLYQTAFEMAQLSENDVVVDAYAGIGTIGISL--ADRVKEVLGMEV----- 338
Query: 336 LSFEKTVSRLPKSVDGNISWHNAD-NSIEPLSWLVGS---------------DVLVVDPP 379
+P++V N + NA N +E + + +G V+ VDPP
Sbjct: 339 ---------IPEAV--NDAKANAKRNGVENVHYFIGKAEKIMPQWLREGIQPTVVFVDPP 387
Query: 380 RKGLDSSLVHALQSI 394
RKGLD+S + ++
Sbjct: 388 RKGLDASFIETTAAV 402
>gi|417933850|ref|ZP_12577170.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
bv. 2 str. F0392]
gi|340770420|gb|EGR92935.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
bv. 2 str. F0392]
Length = 453
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 137/302 (45%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ V LR ++ ++ PY
Sbjct: 126 YRNKAQVPVRRVNGILETGFFRKNSHDLMPLEDFLIQDPVIDQVVVALRDLLRRFDLRPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P ++E L E L
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVILVTTR-----PKIFRVEQLIEQL 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ R I SV N N IFG W+ L + + + G D ++ +F Q
Sbjct: 230 IK------RFPEIVSVMQNINDQNTNAIFGKEWKTLYVQDYITDQMLGNDFQISGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKEDDVVIDAYSGIGTIGLSV--AKHVKEVYGVEVIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K S L + + A+N+++ +WL + ++VDPPRKGL S + A
Sbjct: 342 SQKNAS-LNNITNAHYVCDTAENAMK--NWLKEGIQPTAILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|262047051|ref|ZP_06020010.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
crispatus MV-3A-US]
gi|293381908|ref|ZP_06627876.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
crispatus 214-1]
gi|312984350|ref|ZP_07791691.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
crispatus CTV-05]
gi|423318076|ref|ZP_17295973.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
crispatus FB049-03]
gi|423321419|ref|ZP_17299291.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
crispatus FB077-07]
gi|260572628|gb|EEX29189.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
crispatus MV-3A-US]
gi|290921555|gb|EFD98589.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
crispatus 214-1]
gi|310894244|gb|EFQ43325.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
crispatus CTV-05]
gi|405595517|gb|EKB68905.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
crispatus FB077-07]
gi|405596915|gb|EKB70234.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
crispatus FB049-03]
Length = 449
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 75/323 (23%), Positives = 150/323 (46%), Gaps = 39/323 (12%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + IG ++ +H++V + + P I+ + +R +++ + P
Sbjct: 123 GYRNKAQVPVREYNGQLEIGFFRRHSHDLVPLTNFFTTDPEIDRVLVAVRDVLRKYKIAP 182
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE + TG +RY L NG++ + LV SR + P
Sbjct: 183 YDEVNNTGIIRY-----------LDVRRSKANGEIMVILV--SRVKDFPQ---------- 219
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ S+ + + N+ NVI G + + G + +G + ++P SF
Sbjct: 220 MMGVAAEISQIPKVSGLVLNYNPKKTNVILGKKDYLVFGNDQITDQIGDLKFRISPQSFF 279
Query: 279 QANT----RAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
Q N+ R +D+ ++ Q + V D Y+G G IGLS+ A+ ++V+ +E+ +++
Sbjct: 280 QINSLQTPRLYDLAIK--QADLGSDDVVIDAYSGIGTIGLSV--AKHVKAVRGIEVVRDA 335
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ K + L ++ + I P W + +DV+ VDPPRKGL ++A
Sbjct: 336 -IKDAKDNAEL-NGIENAKYYLGKAEEIMP-RWAKKGMKTDVVFVDPPRKGLTPEFINA- 391
Query: 392 QSIGSAERKAKSLSESSSSMVKE 414
++ + +K +S + ++M+++
Sbjct: 392 -TVKTGPKKVVYISCNPATMIRD 413
>gi|430825526|ref|ZP_19443730.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0164]
gi|430445991|gb|ELA55690.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0164]
Length = 457
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 135/311 (43%), Gaps = 58/311 (18%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+G+R +A++ VR G Y++ +H++V I P I+ A++++R ++ V
Sbjct: 129 FGYRNKAQIPVRRIDGQLATGFYKKNSHDLVPIEDFYIQDPVIDQAIKVVRDILQRFQVR 188
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLA 216
Y+E+ G LR++ + Y+ + +V +R EK S ++ E++
Sbjct: 189 GYNEEKNEGQLRHIIIRRGHYSHEM-------------MVVLVTRKEKFFKSKEIAEAIH 235
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
E L + SV N NVI G++ + L G + + G ++ S
Sbjct: 236 EELPE----------VVSVIQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKS 285
Query: 277 FGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q NT+ + L + ++ V D Y+G G IGLSL A + V +E+
Sbjct: 286 FYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIGTIGLSL--ADRVDKVYGMEVT--- 340
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPP 379
P++++ + ++ +N IE + + VG V+VVDPP
Sbjct: 341 -----------PEAIE-DAQFNALNNKIENVHYEVGKAEKVMKKWQEKGVKPSVIVVDPP 388
Query: 380 RKGLDSSLVHA 390
RKGLD + +
Sbjct: 389 RKGLDHRFIES 399
>gi|322376702|ref|ZP_08051195.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
M334]
gi|321282509|gb|EFX59516.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
M334]
Length = 451
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 138/302 (45%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G + + +H+++ I I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGILETGFFHKNSHDLLPIEDFFIQDSVIDELVVALRDLLRRYDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE ++ G +R +L + +G++ + LV P ++E L E L
Sbjct: 186 DEKEQAGLIR-----------NLVVRRGHYSGQIMVILVTTR-----PKIFRVEQLIEQL 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG W L G+ + + G D ++ +F Q
Sbjct: 230 VKQFPE------IVSVMQNINDKNTNAIFGKEWHTLYGQDFITDQMLGNDYQISGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT+ + L + + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTKMAEKLYQTAIDFAALKSDDVVIDAYSGIGTIGLSV--AKLVKEVYGVEVIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
EK ++L + + A+N+++ SWL + +++VDPPRKGL S + A
Sbjct: 342 SEKN-AQLNNISNAHYVCDTAENAMK--SWLKDGIQPSLILVDPPRKGLTESFIKASSQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|333397467|ref|ZP_08479280.1| RNA m5u methyltransferase family protein [Leuconostoc gelidum KCTC
3527]
gi|406599290|ref|YP_006744636.1| RNA m5u methyltransferase family protein [Leuconostoc gelidum JB7]
gi|406370825|gb|AFS39750.1| RNA m5u methyltransferase family protein [Leuconostoc gelidum JB7]
Length = 498
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 138/314 (43%), Gaps = 70/314 (22%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
Y +R +A+ VR +G+Y+ +H++VD+P P + +R+ + +L+V
Sbjct: 171 YEYRNKAQFPVRKIGKKLSVGMYKRSSHDLVDLPIVHTQDPVTMKVLRTIRELLDKLSVS 230
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL----- 212
Y+ED G ++ + + V+ + G+VQ+T V N+ + P L
Sbjct: 231 IYNEDKNHGTVKTIVVRVS-----------HTTGEVQLTFVTNT--DGFPGDTALITAIN 277
Query: 213 ESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISL 272
++L E + ++ NF ++++G+ L G+ E V G L
Sbjct: 278 QALPE--------------VTGIFQNFNPGRTSLVWGDETIKLWGKDYIEETVMGKTFQL 323
Query: 273 APSSFGQANTRAFDILLRKLQKY--VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEI 330
+P +F Q N ++ ++ + + + D YAG G IGLSLA K V+ +EI
Sbjct: 324 SPRAFMQLNYTQMAVVYKEALAALDLTHADKLVDAYAGVGTIGLSLAD--KVGEVRGMEI 381
Query: 331 NKESQLSFEKTVSRLPKSV-DGNISWHNAD-NSIEPLSWLVGS---------------DV 373
+P++V D NI NA N IE + +G+ D
Sbjct: 382 --------------IPEAVDDANI---NAKINYIENAHYEIGTAEELFPKWQSEGWLADA 424
Query: 374 LVVDPPRKGLDSSL 387
L+VDPPR GLD++L
Sbjct: 425 LIVDPPRTGLDTAL 438
>gi|22298485|ref|NP_681732.1| RNA methyltransferase [Thermosynechococcus elongatus BP-1]
gi|50401571|sp|Q8DKB7.1|Y942_THEEB RecName: Full=Uncharacterized RNA methyltransferase tlr0942
gi|22294665|dbj|BAC08494.1| tlr0942 [Thermosynechococcus elongatus BP-1]
Length = 449
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 78/300 (26%), Positives = 131/300 (43%), Gaps = 39/300 (13%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+G+R + + + + G YQ+G+H++V++ C PR+N + L+Q ++ +
Sbjct: 126 FGYRNKVTYPLGRRHGAVVAGYYQKGSHHLVNLNQCPVQDPRLNPLLAALKQALQPWPI- 184
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
Y E R++ + + R G+ ITLV P L + AE
Sbjct: 185 -YREQTHEPGFRHLGLRIGQ-----------RTGEQLITLVL-----AGPLPAGLAAEAE 227
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
G R + V NF N IFG+ + L G WE + G+ +A ++F
Sbjct: 228 ------GWLQRFQGVIGVCVNFNHHVGNRIFGDETQVLAGRPYLWEEMAGVRFQIASTTF 281
Query: 278 GQANTRAFDILLRKLQKYV-PYGAS-VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q NT + L+ L+ ++ P G + DLY G G + L LA A V VE++
Sbjct: 282 FQVNTAQAEQLVTTLRDWIAPTGQERLVDLYCGVGTLSLPLAGA--VAEVIGVEVHSA-- 337
Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL----VGSDVLVVDPPRKGLDSSLVHAL 391
S ++ ++ + N + A WL DVL++DPPRKG D +++ A+
Sbjct: 338 -SVQQAIANAQHNGINNAHFVCAKAE----EWLPRYDQAVDVLILDPPRKGCDRAVLDAI 392
>gi|296111048|ref|YP_003621429.1| RNA methyltransferase [Leuconostoc kimchii IMSNU 11154]
gi|339491733|ref|YP_004706238.1| RNA methyltransferase [Leuconostoc sp. C2]
gi|295832579|gb|ADG40460.1| RNA methyltransferase [Leuconostoc kimchii IMSNU 11154]
gi|338853405|gb|AEJ31615.1| RNA methyltransferase [Leuconostoc sp. C2]
Length = 500
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 137/314 (43%), Gaps = 70/314 (22%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
Y +R +A+ VR +G+Y+ +H++VD+P +P + +R+ + +L+V
Sbjct: 171 YEYRNKAQFPVRKIGDQLRVGMYKRSSHDLVDLPVVHTQNPATMKVLRTIRELLDKLSVS 230
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL----- 212
Y+ED G ++ + V+ + G VQ+T V N+ + P L
Sbjct: 231 IYNEDKNRGTVKTIVARVS-----------HTTGDVQLTFVTNT--DGFPGDTALIAAIN 277
Query: 213 ESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISL 272
++L E + ++ NF ++++G+ L G+ E V G L
Sbjct: 278 QALPE--------------VTGIFQNFNPGRTSLVWGDETIKLWGKDYIEETVMGKTFQL 323
Query: 273 APSSFGQANTRAFDILLRKLQKY--VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEI 330
+P +F Q N ++ ++ + + + D Y+G G IGLSLA K V+ +EI
Sbjct: 324 SPRAFMQLNHTQMSVVYKEALSALNLTHADKLVDAYSGVGTIGLSLAD--KVGEVRGMEI 381
Query: 331 NKESQLSFEKTVSRLPKSV-DGNISWHNAD-NSIEPLSWLVGS---------------DV 373
+P++V D NI NA N IE + +G+ D
Sbjct: 382 --------------IPEAVDDANI---NAKINHIENAHYEIGTAEELFPKWQSEGWLADA 424
Query: 374 LVVDPPRKGLDSSL 387
LVVDPPR GLD++L
Sbjct: 425 LVVDPPRTGLDTAL 438
>gi|428297522|ref|YP_007135828.1| 23S rRNA m(5)U-1939 methyltransferase [Calothrix sp. PCC 6303]
gi|428234066|gb|AFY99855.1| 23S rRNA m(5)U-1939 methyltransferase [Calothrix sp. PCC 6303]
Length = 453
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 136/294 (46%), Gaps = 26/294 (8%)
Query: 99 GWRCRAKLAV-RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
G+R +A + + + + G YQ+G+H +V++ C R+N + ++Q I++ +
Sbjct: 127 GYRNKATYPIGKSIAGKVVAGYYQKGSHQIVNLNQCPVQDERLNILLREVKQDIQKQRWQ 186
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
PYDE TG +R++ + + R G++ +TLV K P ++E++A+
Sbjct: 187 PYDEKTHTGLIRHLGLRIGR-----------RTGEILLTLVV-----KDPRIPEIETIAQ 230
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
W + R + V N + N IFG R + G+ E G+ + +F
Sbjct: 231 E-WLD-----RYPPLVGVMLNRNSDRTNSIFGRETRCIAGKPFLREEFAGLQFQVRGETF 284
Query: 278 GQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
Q T + LL+++Q + L A G+ LSL A++ + V +E+ E+ +
Sbjct: 285 FQVYTEIAEALLQQIQSELSLKGDEVLLDAYCGIGTLSLPLAKQVKQVIGLELQPEA-VE 343
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHAL 391
K ++L + + + + + L D++++DPPRKG D +++ L
Sbjct: 344 QAKQNAQLNGISNAEFYAGSVEELLPKIDVL--PDIVILDPPRKGCDRTVITTL 395
>gi|410459580|ref|ZP_11313324.1| TrmA family RNA methyltransferase [Bacillus azotoformans LMG 9581]
gi|409930118|gb|EKN67133.1| TrmA family RNA methyltransferase [Bacillus azotoformans LMG 9581]
Length = 460
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 81/361 (22%), Positives = 153/361 (42%), Gaps = 60/361 (16%)
Query: 54 CPHFQSCSGCTHEF---NLHRPIIVDEATDFFKSIGLLDFTFDSCRL-----YGWRCRAK 105
CP ++ C GC + + + IG L+ L + +R +++
Sbjct: 78 CPIYKQCGGCQLQHLSCEAQLKFKQKQVKEVLTRIGHLENITVHPVLGMKDPWKYRNKSQ 137
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
+ V + G +Q+ +H ++++ C + V+ +++ ++ + Y+E+ +
Sbjct: 138 VPVGEIEGGLVAGFFQQRSHTIINMEECLIQAEENDRVVQGVKRIAEKYGMRAYNEETHS 197
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRNGG 224
G LR++ VT RY + +V +R E + DK+ + + E +
Sbjct: 198 GTLRHI---VT----------RYGRKTQDVMVVLITRTENFQHKDKIIDDIHEAFPQ--- 241
Query: 225 SRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRA 284
+ S+ N + NVIFG++ + L G+ ++++G I +++ SF Q N
Sbjct: 242 -------VKSIIQNINSKRTNVIFGDKTKVLWGDEYLYDSIGDIQFAISARSFYQVNPEQ 294
Query: 285 FDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLA-AARKCRSVKCV-----------EI 330
+L K +Y +V D Y G G I L LA A K V+ V ++
Sbjct: 295 TKVLYDKALEYAKLSGEETVIDAYCGIGTISLFLAQKAMKVYGVEIVPEAIEDAKRNAKL 354
Query: 331 NKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHA 390
N + + FE + KS + +WH + +DV+VVDPPRKG D+ L+
Sbjct: 355 NGMTNVEFE-----VGKSEEIIPAWHQQG---------IKADVIVVDPPRKGCDTELLET 400
Query: 391 L 391
+
Sbjct: 401 I 401
>gi|449903000|ref|ZP_21791853.1| putative RNA methyltransferase [Streptococcus mutans M230]
gi|449261735|gb|EMC59200.1| putative RNA methyltransferase [Streptococcus mutans M230]
Length = 451
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 87/342 (25%), Positives = 154/342 (45%), Gaps = 46/342 (13%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A+L VR + G +++ +H+++ I I+ + R ++ +++P
Sbjct: 125 AYRNKAQLPVRRVNGQLETGFFRKNSHDLMPIEDYYIQDKEIDRLINFTRDLLRRFDLKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R +L + G++ + LV +R++ ++E + E
Sbjct: 185 YDEKEQTGLIR-----------NLVVRRGHYTGQIMLVLV-TTRSKIF----RIEQMIEK 228
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ S + S+ N N IFG+ +R L GE + + G ++ SF
Sbjct: 229 II------SEFPAVKSIIQNINDRNTNAIFGSEFRTLYGEDTIEDTMLGNRYIISAQSFY 282
Query: 279 QANTRAFDILLRKL-QKYVPYG-----ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
Q NT ++ KL Q + + +V D Y+G G IGLS A+K + V VE+ +
Sbjct: 283 QVNT----VMAEKLYQTAIDFSDLTPDDTVIDAYSGIGTIGLSF--AKKVKDVYGVEVIE 336
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LSWL---VGSDVLVVDPPRKGLDSSL 387
+ EK +++ + H +S E SW + DV++VDPPRKGL S
Sbjct: 337 AAVRDAEKNA-----ALNNITNVHYVADSAEKAMASWSKRGIKPDVILVDPPRKGLTESF 391
Query: 388 VHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQ 429
+ A S RK +S + ++M ++ K L K VQ
Sbjct: 392 IEA--STAMQPRKITYISCAPATMARDVKLYEELGYKLVKVQ 431
>gi|410456239|ref|ZP_11310104.1| TrmA family RNA methyltransferase [Bacillus bataviensis LMG 21833]
gi|409928309|gb|EKN65423.1| TrmA family RNA methyltransferase [Bacillus bataviensis LMG 21833]
Length = 462
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 90/358 (25%), Positives = 141/358 (39%), Gaps = 46/358 (12%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVDEATDFFK-SIGLLDF--TFDSCRLYGWRCR 103
CP + C GC + R IIV K +I LD T +G+R +
Sbjct: 79 CPVYDQCGGCQLQHLQYGQQLKEKRDIIVQSLERHTKLAINKLDIRETIGMEDPWGYRNK 138
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
+ V L GLY +H +++I C H + N A +++ ++EL++ Y+E
Sbjct: 139 SSFQVGQKDGKVLAGLYGLNSHQLINIDQCAVQHSQTNEATAKVKRILEELHIPIYNEKT 198
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNG 223
R G +R + V L Q+ L+ S+ E +E + + L
Sbjct: 199 RKGIVRTIVTRVGVQTCEL-----------QVVLI-TSQKELPKKELIIEEIQKQLPN-- 244
Query: 224 GSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTR 283
+ SV N ++IFG L GE E +G + L+ +F Q N
Sbjct: 245 --------VKSVVQNINGQKTSLIFGEETVPLAGEEFIQETLGDLQFELSARTFFQLNPS 296
Query: 284 AFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
L +++K V D Y G G IGL LA + V+ ++I ES +K
Sbjct: 297 QTIKLYNEVKKAAGLTGKEKVVDAYCGVGTIGLWLAD--RAAEVRGMDIIPESIEDAKKN 354
Query: 342 VSRLPKSVDGNISWHNADNSIEPL--SWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
R G + E + W+ DV+VVDPPR GLD+ L+ + +
Sbjct: 355 AKR-----HGFTNTKYVPGKAEEVLPKWVKKGWKPDVVVVDPPRTGLDNQLIQTILQV 407
>gi|339451046|ref|ZP_08654416.1| RNA methyltransferase [Leuconostoc lactis KCTC 3528]
Length = 464
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 147/323 (45%), Gaps = 41/323 (12%)
Query: 79 TDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHP 138
D +IG+ D T +R +A++ V+ + G Y+ G+HN+V + P
Sbjct: 122 VDVSPTIGMADPT-------KYRNKAQVPVQEINGRLETGFYRRGSHNLVPVEDFYIQDP 174
Query: 139 RINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLV 198
+++ AV + R +++L + YDE + G +R++ A Y + ++ + +V
Sbjct: 175 KVDEAVTVTRDILRDLGLSAYDETTKKGVVRHIM-----------ARRGYYSHELMVVIV 223
Query: 199 WNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGE 258
N++ + P +D++ + + + +IH N NVI G + G
Sbjct: 224 TNTK--RLPQADEIATRLQ-----AKLPELKSFIH----NINHDDTNVIMGQWNETIWGA 272
Query: 259 TDFWENVGGIDISLAPSSFGQAN---TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLS 315
D + + G D + P+SF Q N T L + P +V D Y+G G I LS
Sbjct: 273 DDIHDQLMGKDFVIGPNSFYQVNPQTTATLYTLAAEKAGLKPTDIAV-DAYSGIGTITLS 331
Query: 316 LAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSD 372
+ A K + V VE+ + + E+ +D N+++ AD + ++W + +
Sbjct: 332 I--ADKVKHVYGVEVVENAVADAEQNARN--NQID-NVTFVTADAPEQMVAWAAEGLNPN 386
Query: 373 VLVVDPPRKGLDSSLVHALQSIG 395
V+ VDPPRKGL + L+ A+ ++
Sbjct: 387 VVFVDPPRKGLTAELISAVAAMA 409
>gi|326692440|ref|ZP_08229445.1| RNA methyltransferase [Leuconostoc argentinum KCTC 3773]
Length = 464
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 146/318 (45%), Gaps = 41/318 (12%)
Query: 84 SIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAA 143
+IG+ D T +R +A++ V+ + G Y+ G+HN+V + P+++ A
Sbjct: 127 TIGMTDPT-------KYRNKAQVPVQEINGRLETGFYRRGSHNLVPVEDFYIQDPKVDEA 179
Query: 144 VELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRN 203
V + R +++L + YDE + G +R++ A Y + ++ + +V N++
Sbjct: 180 VTVTRDILRDLGLSAYDETTKKGVVRHIM-----------ARRGYYSHELMVVIVTNTK- 227
Query: 204 EKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWE 263
+ P +D++ + + + +IH N NVI G + G D +
Sbjct: 228 -RLPQADEIATRLQ-----AKLPELKSFIH----NINHDDTNVIMGQWNETIWGADDIHD 277
Query: 264 NVGGIDISLAPSSFGQAN---TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAAR 320
+ G D + P+SF Q N T L + P +V D Y+G G I LS+ A
Sbjct: 278 QLMGKDFVIGPNSFYQVNPQTTATLYTLAAEKAGLKPTNIAV-DAYSGIGTITLSI--AD 334
Query: 321 KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVD 377
K + V VE+ + + E+ +D N+++ AD + ++W + +V+ VD
Sbjct: 335 KVKHVYGVEVVENAVADAEQNARN--NQID-NVTFVTADAPEQMVAWAAEGLKPNVVFVD 391
Query: 378 PPRKGLDSSLVHALQSIG 395
PPRKGL + L+ A+ ++
Sbjct: 392 PPRKGLTAELISAVAAMA 409
>gi|295692415|ref|YP_003601025.1| RNA methyltransferase [Lactobacillus crispatus ST1]
gi|295030521|emb|CBL50000.1| RNA methyltransferase [Lactobacillus crispatus ST1]
Length = 449
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 75/323 (23%), Positives = 150/323 (46%), Gaps = 39/323 (12%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + IG ++ +H++V + + P I+ + +R +++ + P
Sbjct: 123 GYRNKAQVPVREYNGQLEIGFFRRHSHDLVPLTNFFTTDPEIDRVLVAVRDVLRKYKIAP 182
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE + TG +RY L NG++ + LV SR + P +
Sbjct: 183 YDEVNNTGIIRY-----------LDVRRSKANGEIMVILV--SRVKDFPQMTGV------ 223
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
S+ + + N+ NVI G + + G + +G + ++P SF
Sbjct: 224 ----AAEISQIPKVSGLVLNYNPKKTNVILGKKDYLVFGNDQITDQIGDLKFRISPQSFF 279
Query: 279 QANT----RAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
Q N+ R +D+ ++ Q + V D Y+G G IGLS+ A+ ++V+ +E+ +++
Sbjct: 280 QINSLQTPRLYDLAIK--QADLGSDDVVIDAYSGIGTIGLSV--AKHVKAVRGIEVVRDA 335
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ K + L ++ + I P W + +DV+ VDPPRKGL ++A
Sbjct: 336 -IKDAKDNAEL-NGIENAKYYLGKAEEIMP-RWAKKGMKTDVVFVDPPRKGLTPEFINA- 391
Query: 392 QSIGSAERKAKSLSESSSSMVKE 414
++ + +K +S + ++M+++
Sbjct: 392 -TVKTGPKKVVYISCNPATMIRD 413
>gi|257868017|ref|ZP_05647670.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
EC30]
gi|257874347|ref|ZP_05654000.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
EC10]
gi|257802100|gb|EEV31003.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
EC30]
gi|257808511|gb|EEV37333.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
EC10]
Length = 474
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 77/315 (24%), Positives = 136/315 (43%), Gaps = 58/315 (18%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+G+R +A++ V+ G Y++ +H +V I P I+ A+ +R ++ NV+
Sbjct: 147 FGYRNKAQIPVQKIHGKLTTGFYRKNSHTLVPIEDFYIQDPNIDQAIIKVRDILQRFNVK 206
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
Y+E+ G LR++ + + +G++ + LV + P K E +AE
Sbjct: 207 AYNEEAHEGFLRHIVV-----------RRGHHSGEMMVVLVT-----RKPKFFKGEEIAE 250
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
+ + SV N NVI G R L G++ + + G ++ SF
Sbjct: 251 VIHEEIPE------VVSVIQNINEEKTNVIMGEFERVLYGKSSIDDQLLGKTFQISAKSF 304
Query: 278 GQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q NT ++L + + + V D YAG G IG+SL A + + V +E+
Sbjct: 305 YQINTAQTEVLYQTAFEMAQLSENDIVVDAYAGIGTIGISL--ADRVKEVLGMEV----- 357
Query: 336 LSFEKTVSRLPKSVDGNISWHNAD-NSIEPLSWLVGS---------------DVLVVDPP 379
+P++V N + NA N +E + + +G V+ VDPP
Sbjct: 358 ---------IPEAV--NDAKANAKRNGVENVHYFIGKAEKIMPQWLREGIQPTVVFVDPP 406
Query: 380 RKGLDSSLVHALQSI 394
RKGLD+S + ++
Sbjct: 407 RKGLDASFIETTAAV 421
>gi|417924315|ref|ZP_12567761.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
SK569]
gi|342836102|gb|EGU70325.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
SK569]
Length = 453
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 139/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFFIQDSVIDEVVVALRDLLRRYDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE ++ G +R +L + +G++ + LV P ++E L + L
Sbjct: 186 DEKEQAGLIR-----------NLVVRRGHYSGQIMVILVTTR-----PKVFRVEQLIDQL 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLENDYQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT+ + L + + A V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTQMAEKLYQTAIDFAELKADDVVIDAYSGIGTIGLSV--AKHVKEVYGVEVIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K ++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 342 SKKN-AQLNNISNAHYVCDTAENAMK--TWLKEGIQPTVILVDPPRKGLTESFIKASSQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|357236080|ref|ZP_09123423.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus criceti
HS-6]
gi|356884062|gb|EHI74262.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus criceti
HS-6]
Length = 452
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 84/339 (24%), Positives = 155/339 (45%), Gaps = 38/339 (11%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
Y +R +A++ VR G +++ +H++V I I+ + +R ++ +++
Sbjct: 124 YAYRNKAQVPVRRVRGQLETGFFRKNSHDLVPIEDFYIQDKEIDKLIVFVRDLLRRYDLK 183
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
PYDE ++TG +R +L + G++ + LV +R++ ++E + E
Sbjct: 184 PYDEKEQTGLIR-----------NLVVRRGHYTGQMMLVLV-TTRSKIF----RIEQMIE 227
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
+ + + S+ N NV+ G+ +R L G+ +++ G ++ SF
Sbjct: 228 QITTAFPA------VKSIIQNINDKATNVVLGSEFRTLYGKDTIIDSMLGNQYEISAQSF 281
Query: 278 GQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q NT + L + + V D Y+G G IGLS+ A++ ++V VE+ K +
Sbjct: 282 YQVNTVMAEKLYQTAIDFSELSKEDVVIDAYSGIGTIGLSV--AKQVKAVYGVEVIKAAV 339
Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIEP--LSWL---VGSDVLVVDPPRKGLDSSLVHA 390
EK +++G + H +S E W + DV++VDPPRKGL S + A
Sbjct: 340 KDAEKNA-----ALNGIANAHYIADSAEKAMAKWSKQGIKPDVILVDPPRKGLTESFIKA 394
Query: 391 LQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQ 429
S RK +S +S++M ++ K L K VQ
Sbjct: 395 --SSAMQPRKITYVSCNSATMARDIKLYEELGYKLKKVQ 431
>gi|326693112|ref|ZP_08230117.1| RNA methyltransferase [Leuconostoc argentinum KCTC 3773]
Length = 506
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 88/340 (25%), Positives = 149/340 (43%), Gaps = 70/340 (20%)
Query: 74 IVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVD 129
++ +A + F+ G D+ T Y +R +A+ VR +G+Y+ +H++VD
Sbjct: 151 VIAQALEKFQPRGWTDYDLRDTIGMANPYEYRNKAQFPVRKIGDKLSVGMYKRSSHDLVD 210
Query: 130 IPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYR 189
+P P + +R + +L+V Y+ED G ++ ++ A +
Sbjct: 211 LPVVHTQDPATMKVLRTVRDLLDKLSVSIYNEDKNRGTVK-----------TIVARASHT 259
Query: 190 NGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIF 248
G+VQ+T+V N+ + P L E++ + L G ++ NF ++++
Sbjct: 260 TGEVQLTVVTNT--DGFPGDAALIEAINQALPEVTG----------IFQNFNPGRTSIVW 307
Query: 249 GNRWRHLLGETDFWENVGGIDISLAPSSFGQAN----TRAFDILLRKLQKYVPYGASVTD 304
G L G+ E + G L+P +F Q N T ++ L L + + + D
Sbjct: 308 GEETIKLWGKDYIEETIMGKTFQLSPRAFMQLNYTQMTVVYNEALAALD--LTHADKLVD 365
Query: 305 LYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSV-DGNISWHNAD-NSI 362
YAG G IGLSLA K V+ +EI +P++V D NI NA+ N I
Sbjct: 366 SYAGVGTIGLSLAD--KVGEVRGMEI--------------IPEAVDDANI---NAEINHI 406
Query: 363 EPLSWLVGS---------------DVLVVDPPRKGLDSSL 387
+ +G+ D LVVDPPR GLD++L
Sbjct: 407 TNAKYEIGTAEELFPKWQAEGWIADALVVDPPRTGLDTAL 446
>gi|405978993|ref|ZP_11037338.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces turicensis
ACS-279-V-Col4]
gi|404393144|gb|EJZ88200.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces turicensis
ACS-279-V-Col4]
Length = 403
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 81/296 (27%), Positives = 123/296 (41%), Gaps = 31/296 (10%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R AKL V GT P +G+ V D+P C H IN A L++ I++LN+ P
Sbjct: 72 GFRTNAKLVVGGTRRRPTLGILGRDRRGV-DLPDCPIQHSAINRATPGLKRFIRQLNLTP 130
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YD ++G+L+YV + V N + V +R+ S L L +
Sbjct: 131 YDVPTKSGELKYVLLTVGVDNA------------LMCRFVLRTRDRVSDIRKALPYLFDL 178
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ +I V AN + ++ G L VG + ++L P SF
Sbjct: 179 V----------PHIEVVTANIHPTHEAIVEGPDEIILTTRRTLKMAVGDVQLALGPRSFT 228
Query: 279 QANTRAFDILLRKLQKY------VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
Q NT L R++ ++ + S DLY G G L LAAA V VE++
Sbjct: 229 QTNTEVAGKLYRQVTEWAVSDNEADHPRSAWDLYCGVGGFALHLAAA-GITPVTGVEVSD 287
Query: 333 ESQLSFEKTVSRLP-KSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSL 387
++ S + +L D +A DVLV++PPR+G+ S L
Sbjct: 288 QAIASAIQGARQLKLGRADAQFIAKDATAWAARQPEESRPDVLVINPPRRGIGSEL 343
>gi|187934647|ref|YP_001887516.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
B str. Eklund 17B]
gi|187722800|gb|ACD24021.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
B str. Eklund 17B]
Length = 455
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 86/358 (24%), Positives = 153/358 (42%), Gaps = 42/358 (11%)
Query: 53 QCPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDFTFDSCRL------YGWRCR 103
+C +++ C GC+ + ++ + + D + IG L + + Y +R +
Sbjct: 71 KCSNYKRCGGCSIQHMTYKKQLDFKWERVKDCIEKIGGLSKEIINYPMGMESNPYRYRNK 130
Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED- 162
+L + + +IG Y +H+++D+ +C + L +Q IK N+EP D
Sbjct: 131 VQLPIGKVNNEIVIGFYAPRSHDIIDLDYCLIQDKVADDVANLTKQWIKINNIEPATIDG 190
Query: 163 --DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLW 220
+ G L+++ + ++ +V + LV + N KL+ +
Sbjct: 191 EFNSNGILKHLMI-----------RRGFKTDEVMVVLVATTSN-----IPKLDEFKHIIL 234
Query: 221 RNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQA 280
N I S+ N NVI G L GE + +G +++P SF Q
Sbjct: 235 ENIKG------IKSIVLNINPKNTNVILGEECITLYGEDTIKDYIGEFKFNISPLSFFQV 288
Query: 281 NTRAFDILLRKLQKY--VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSF 338
N +IL K +Y + +V D Y G G I L L ++K + V VEI E +
Sbjct: 289 NPIQTEILYNKALEYAGLTGNETVFDAYCGTGTITLFL--SQKAKKVYGVEI-IEPAIIN 345
Query: 339 EKTVSRLPKSVDGNISWHNADNSIEP--LSWLVGSDVLVVDPPRKGLDSSLVHALQSI 394
K ++L +VD + + P +S + +D++VVDPPRKG D L+ A+ +
Sbjct: 346 AKENAKL-NNVDNAEFFVGKSEEVIPNLISEGLKADIIVVDPPRKGCDIKLLEAIGDV 402
>gi|254977015|ref|ZP_05273487.1| putative RNA methyltransferase [Clostridium difficile QCD-66c26]
gi|255651934|ref|ZP_05398836.1| putative RNA methyltransferase [Clostridium difficile QCD-37x79]
gi|306521684|ref|ZP_07408031.1| putative RNA methyltransferase [Clostridium difficile QCD-32g58]
Length = 544
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 87/357 (24%), Positives = 152/357 (42%), Gaps = 50/357 (14%)
Query: 56 HFQSCSGCT---HEFNLHRPIIVDEATDFFKSIGLLD--FTFDSCRL---YGWRCRAKLA 107
+ + C GC ++N + +E IG L+ D+ + Y +R +A+
Sbjct: 75 NLRDCGGCQIQDLDYNKQLEMKTNEVKQVLSRIGKLEDVEVHDTIGMDNPYRYRNKAQFP 134
Query: 108 VRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGD 167
++ + P+IG Y++ TH+V+ C H + V++++ I+ V YDE TG
Sbjct: 135 IQKNNGIPIIGFYKKKTHDVISTEKCVIQHEINDKIVKIIKTYIRAYKVSIYDEKTHTGL 194
Query: 168 LRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRS 227
+R++ + + +V + LV N K P L+ LA L N
Sbjct: 195 IRHLVTKIG-----------FTTKEVMVVLVANGN--KLP---YLKELASVLKENIPG-- 236
Query: 228 REHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDI 287
++ N N I G + G+ + +G + ++P SF Q N +
Sbjct: 237 ----FKTLVVNVNQKDTNAILGRENIVIYGDGKINDYIGDLVFEISPLSFFQVNPVQTKV 292
Query: 288 LLRKLQKYVPYG--ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRL 345
L K +Y +V D+Y G G I L L A+K + V +EI ++ + K ++L
Sbjct: 293 LYDKALEYANLNDTDTVFDIYCGIGTISLFL--AQKAKKVYGIEIIDDA-IKDAKINAKL 349
Query: 346 PKSVDGNISWHNAD------NSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHALQSI 394
+ HNA+ I P + G ++V+VVDPPRKG D ++ + S+
Sbjct: 350 N-------NIHNAEFYVGKAEEIVPKMYREGKTANVVVVDPPRKGCDEKVLETIVSM 399
>gi|336065405|ref|YP_004560263.1| 23S rRNA (uracil-5-)-methyltransferase [Erysipelothrix
rhusiopathiae str. Fujisawa]
gi|334295351|dbj|BAK31222.1| 23S rRNA (uracil-5-)-methyltransferase [Erysipelothrix
rhusiopathiae str. Fujisawa]
Length = 456
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 141/320 (44%), Gaps = 34/320 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A + V+ G ++ GTH ++ + + ++ A+ ++R ++ +E Y
Sbjct: 132 YRNKATIPVQSVKGVLETGFFKRGTHELIPVENFYIQEEALDKAILVIRDLLRHFKIEAY 191
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
E + TG +R + + Y L + LV N E D + S+ E L
Sbjct: 192 QEANHTGLIRNIMVRQGHYTEEL-----------MVVLVTNGM-ELPFEKDIVNSIVEAL 239
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ S+ N T NVI G+ + L GE + + + G ++ SF Q
Sbjct: 240 PKTV----------SIVQNINTKQTNVILGSEQKVLFGEDLYHDQLLGKTFKISSKSFFQ 289
Query: 280 ANTRAFDILLRKLQKY--VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT+ ++L ++ + V V D Y G G I L+L A K + V VEI E +
Sbjct: 290 INTKQTEVLYQQAIEMAEVTSDDVVVDAYCGIGSITLNL--AEKAKFVYGVEI-VEDAII 346
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
K ++L + A+ I P +W+ + DVLVVDPPRKGLD + A +I
Sbjct: 347 MAKENAKLNHIENVQFEVGEAE-KIMP-TWVKEGIEIDVLVVDPPRKGLDPVFIEA--AI 402
Query: 395 GSAERKAKSLSESSSSMVKE 414
S R+ +S + S+ K+
Sbjct: 403 TSKPRRIVYVSCNPISLAKD 422
>gi|328957913|ref|YP_004375299.1| putative RNA methyltransferase [Carnobacterium sp. 17-4]
gi|328674237|gb|AEB30283.1| putative RNA methyltransferase [Carnobacterium sp. 17-4]
Length = 458
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 136/312 (43%), Gaps = 60/312 (19%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + G +++ +H V+ + + P+I+ + +R ++E V+P
Sbjct: 132 GYRNKAQIPVRKINDKLTTGFFRKNSHEVIPMENFYIQDPKIDETIIAVRDIMREYGVKP 191
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEK-SPNS----DKLE 213
Y+E++ TG+LR++ + Y G++ I LV +R K P S D LE
Sbjct: 192 YNENENTGNLRHIIV-----------RRGYYTGEIMIVLV--TRTAKLFPTSKIIPDILE 238
Query: 214 SLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLA 273
++ E + S+ N NVI G+ L GE F + + G ++
Sbjct: 239 AIPEVV--------------SIVQNVNPKHTNVILGDDAIVLYGEDKFRDTLLGNTFEIS 284
Query: 274 PSSFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAA-ARKCRSVKCV-- 328
SF Q N + L + + + +V D Y+G G I L+LA A+ ++ +
Sbjct: 285 HRSFYQVNPLQTEKLYQTVLDFAELTGEETVIDAYSGIGTITLTLAKNAKHVYGIEIIEP 344
Query: 329 ---------EINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPP 379
E+N ++FE + + + W + +D+LVVDPP
Sbjct: 345 AVENAKANAELNNIENVTFEAGAAE-----EVMVQWSEEGRT---------ADLLVVDPP 390
Query: 380 RKGLDSSLVHAL 391
RKGL+ A+
Sbjct: 391 RKGLEKEFTEAV 402
>gi|423082865|ref|ZP_17071448.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium difficile
002-P50-2011]
gi|423086315|ref|ZP_17074724.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium difficile
050-P50-2011]
gi|357547184|gb|EHJ29078.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium difficile
002-P50-2011]
gi|357547302|gb|EHJ29192.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium difficile
050-P50-2011]
Length = 452
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 151/357 (42%), Gaps = 50/357 (14%)
Query: 56 HFQSCSGCT---HEFNLHRPIIVDEATDFFKSIGLLD--FTFDSCRL---YGWRCRAKLA 107
+ + C GC ++N + +E IG L+ D+ + Y +R +A+
Sbjct: 75 NLRDCGGCQIQDLDYNKQLEMKTNEVKQVLSRIGKLEDVEVHDTIGMDNPYRYRNKAQFP 134
Query: 108 VRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGD 167
++ + P+IG Y++ TH+V+ C H + V++++ I+ V YDE TG
Sbjct: 135 IQKNNGIPIIGFYKKKTHDVISTEKCVIQHEINDKIVKIIKTYIRAYKVSIYDEKTHTGL 194
Query: 168 LRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRS 227
+R+ L + +V + LV N K P L+ LA L N
Sbjct: 195 IRH-----------LVTKIGFTTKEVMVVLVANGN--KLP---YLKELASVLKENIPG-- 236
Query: 228 REHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDI 287
++ N N I G + G+ + +G + ++P SF Q N +
Sbjct: 237 ----FKTLVVNVNQKNTNAILGRENIVIYGDGKINDYIGDLVFEISPLSFFQVNPVQTKV 292
Query: 288 LLRKLQKYVPYG--ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRL 345
L K +Y +V D+Y G G I L L A+K + V +EI ++ + K ++L
Sbjct: 293 LYDKALEYANLNDTDTVFDIYCGIGTISLFL--AQKAKKVYGIEIIDDA-IKDAKINAKL 349
Query: 346 PKSVDGNISWHNAD------NSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHALQSI 394
+ HNA+ I P + G ++V+VVDPPRKG D ++ + S+
Sbjct: 350 N-------NIHNAEFYVGKAEEIVPKMYREGKTANVVVVDPPRKGCDEKVLETIVSM 399
>gi|402828146|ref|ZP_10877037.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia sp. CM382]
gi|402286747|gb|EJU35209.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia sp. CM382]
Length = 398
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 121/290 (41%), Gaps = 46/290 (15%)
Query: 116 LIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAV 175
L G+Y+ GTH V+D C + A ++ +RQ + +L +EPYDED G LR+ Q+ V
Sbjct: 82 LCGMYERGTHRVIDSSECLIENQVAKAIIQSVRQLMPKLRIEPYDEDADAGFLRHAQVRV 141
Query: 176 TTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSV 235
+ +G+V +TLV +R+E P +L A L R R I +V
Sbjct: 142 G-----------HASGEVMVTLV--TRDEAFPAGKRL---ARELVR------RHPQITTV 179
Query: 236 WANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKY 295
N T NVI G++ R + G + + G+ ++ SF Q N+ ++L R +
Sbjct: 180 VQNVNTRRTNVIMGDKERTIYGPGFILDELCGLSFRISSRSFYQVNSEQTEVLYRTAVEM 239
Query: 296 VPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNI 353
++ D Y G G IGL A K ++ K R+ D
Sbjct: 240 AGLTGEETILDAYCGTGTIGLVAA--------KGID-GKPGAKHLIGVEERMDAVADARA 290
Query: 354 -SWHNADNSIEPLSWLVGS------------DVLVVDPPRKGLDSSLVHA 390
+ HN S E + G+ D + +DPPR G + A
Sbjct: 291 NARHNGIGSAEFFADDAGAFMRRLAAEGGSVDAVFMDPPRAGATPDFLKA 340
>gi|365926276|ref|ZP_09449039.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus mali KCTC 3596 =
DSM 20444]
gi|420265515|ref|ZP_14768069.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus mali KCTC 3596 =
DSM 20444]
gi|394427920|gb|EJF00536.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus mali KCTC 3596 =
DSM 20444]
Length = 458
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 76/315 (24%), Positives = 140/315 (44%), Gaps = 54/315 (17%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR G +++ +HN V + RI+ ++ +R +++ + Y
Sbjct: 129 YRNKAQVPVRMVKNRLETGFFKKNSHNFVPMEDYLIQDERIDEVIKAVRDILRKFMISAY 188
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE G +R++ + Y+ ++ +V +R +K P SD E + E L
Sbjct: 189 DEKTHKGVVRHIIVRRGHYSH-------------EVMVVLVTRAKKIPESD--EVVGEIL 233
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
R+ V N NVI G + L G+ +++ GI+ ++ SF Q
Sbjct: 234 KACPDVRT-------VVQNINQEKTNVILGKTEKILAGDGHITDSLNGINFEISAHSFYQ 286
Query: 280 ANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
N+ + + +K+ + +V D Y G G I L+L A+K V VEI
Sbjct: 287 VNSVQTEKIYQKVVEAAELTGKETVIDAYCGIGTISLNL--AQKAAKVYGVEI------- 337
Query: 338 FEKTVSRLPKSVDG---NISWHNADNSIEPL----SWL-------VGSDVLVVDPPRKGL 383
+P+++D N + +N DN+I + W+ + DV+V DPPRKGL
Sbjct: 338 -------VPEAIDDAKKNATANNIDNAIFEVGTASDWMAKWSEEGIKPDVVVFDPPRKGL 390
Query: 384 DSSLVHALQSIGSAE 398
+S ++++ + A+
Sbjct: 391 ESEVINSTAKLAPAK 405
>gi|319654160|ref|ZP_08008249.1| hypothetical protein HMPREF1013_04869 [Bacillus sp. 2_A_57_CT2]
gi|317394094|gb|EFV74843.1| hypothetical protein HMPREF1013_04869 [Bacillus sp. 2_A_57_CT2]
Length = 460
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 80/375 (21%), Positives = 144/375 (38%), Gaps = 80/375 (21%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVD----------EATDFFKSIGLLDFTFDSCR 96
CP + C GC + R II+ E D ++IG+ D
Sbjct: 79 CPVYHECGGCQLQHLRYDQQLKEKRDIIIQALERHTKLNPEKLDIKETIGMED------- 131
Query: 97 LYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNV 156
+ +R +++ V L GLY +H +++I HC HP+ E +++ +++L +
Sbjct: 132 PWSYRNKSQFQVGQKDGKVLAGLYGMNSHRLINIEHCAVQHPQTTKVTEAVKRILQDLRI 191
Query: 157 EPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLA 216
Y+E R G +R ++ A + G++QI L+ + + +
Sbjct: 192 PIYNERSRKGIVR-----------TIVARVGIQTGELQIVLITTQKELPKKEIIIEKIKS 240
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
E + S+ N ++IFG +L G E +G + L+ +
Sbjct: 241 EL-----------PEVKSIIQNVNGEKTSLIFGQETMNLDGSDFIQETLGDLQFELSART 289
Query: 277 FGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q N L ++++ V D Y G G IGL +A + ++ ++I +ES
Sbjct: 290 FFQLNPEQTVKLYNEVKRAAALTGKEKVADAYCGVGTIGLWVAD--QAAEIRGMDIIRES 347
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPP 379
+K R + I+ ++VG DV++VDPP
Sbjct: 348 IEDAKKNADR---------------HGIKHAQYVVGKAEEWLPKWTKDGWRPDVIIVDPP 392
Query: 380 RKGLDSSLVHALQSI 394
R GLD L+ + +
Sbjct: 393 RTGLDHQLLKTILKV 407
>gi|423198277|ref|ZP_17184860.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aeromonas hydrophila
SSU]
gi|404630501|gb|EKB27178.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aeromonas hydrophila
SSU]
Length = 450
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 83/333 (24%), Positives = 153/333 (45%), Gaps = 44/333 (13%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAH---HPRINAAVELLRQGIKEL 154
+ +R +A+ AVRG IG Y++ +H+++ C H +NA V R ++
Sbjct: 122 FAYRNKAQYAVRGCEAGAEIGFYRKHSHDLITADDCAVQDSLHVELNARV---RNWMRAH 178
Query: 155 NVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSP-NSDKLE 213
++ YDE D TG +R +L + +++G++ + LV + E+ P ++ L
Sbjct: 179 DIAAYDEVDHTGFVR-----------NLMTRKGFKSGELMVVLV--TLGEELPFEAELLA 225
Query: 214 SLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLA 273
+L++ + ++ N + N I G+ R LLG + + ++ ++
Sbjct: 226 ALSDL------------PVTTLVQNINEARTNRILGDNNRVLLGSGVIRDKIHELEFEIS 273
Query: 274 PSSFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEIN 331
P SF Q N D+L K +Y +V D+Y G G I L LA ++ K V I
Sbjct: 274 PLSFFQNNPSQTDVLYSKALEYCELTGNETVFDIYCGIGTISLFLAG----KAAKVVGIE 329
Query: 332 K-ESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL-SWLVGSDVLVVDPPRKGLDSSLVH 389
ES +S + + L A+ + L + V +DV+V+DPPRKG D +++
Sbjct: 330 SVESAISDARRNAALNGIEQTEFHVGKAEQLMPALHAEGVSADVVVMDPPRKGCDKAVLQ 389
Query: 390 ALQSIGSAERKAKSLSESSSSMVKEEKRPWILR 422
L + A R+ +S + +M ++ W+++
Sbjct: 390 TL--VAMAPRRLVYVSCNPQTMARD--LAWLVK 418
>gi|255102596|ref|ZP_05331573.1| putative RNA methyltransferase [Clostridium difficile QCD-63q42]
Length = 454
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 87/357 (24%), Positives = 152/357 (42%), Gaps = 50/357 (14%)
Query: 56 HFQSCSGCT---HEFNLHRPIIVDEATDFFKSIGLLD--FTFDSCRL---YGWRCRAKLA 107
+ + C GC ++N + +E IG L+ D+ + Y +R +A+
Sbjct: 75 NLRDCGGCQIQDLDYNKQLEMKTNEVKQVLSRIGKLEDVEVHDTIGMDNPYRYRNKAQFP 134
Query: 108 VRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGD 167
++ + P+IG Y++ TH+V+ C H + V++++ I+ V YDE TG
Sbjct: 135 IQKNNGIPIIGFYKKKTHDVISTEKCVIQHEINDKIVKIIKTYIRAYKVSIYDEKTHTGL 194
Query: 168 LRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRS 227
+R++ + + +V + LV N K P L+ LA L N
Sbjct: 195 IRHLVTKIG-----------FTTKEVMVVLVANGN--KLP---YLKELASVLKENIPG-- 236
Query: 228 REHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDI 287
++ N N I G + G+ + +G + ++P SF Q N +
Sbjct: 237 ----FKTLVVNVNQKDTNAILGRENIVIYGDGKINDYIGDLVFEISPLSFFQVNPVQTKV 292
Query: 288 LLRKLQKYVPYG--ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRL 345
L K +Y +V D+Y G G I L L A+K + V +EI ++ + K ++L
Sbjct: 293 LYDKALEYANLNDTDTVFDIYCGIGTISLFL--AQKAKKVYGIEIIDDA-IKDAKINAKL 349
Query: 346 PKSVDGNISWHNAD------NSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHALQSI 394
+ HNA+ I P + G ++V+VVDPPRKG D ++ + S+
Sbjct: 350 N-------NIHNAEFYVGKAEEIVPKMYREGKTANVVVVDPPRKGCDEKVLETIVSM 399
>gi|409385220|ref|ZP_11237905.1| RNA methyltransferase, TrmA family [Lactococcus raffinolactis 4877]
gi|399207348|emb|CCK18820.1| RNA methyltransferase, TrmA family [Lactococcus raffinolactis 4877]
Length = 455
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 142/306 (46%), Gaps = 38/306 (12%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A + VR + G +++ +H +V + P I+ V +R +++ ++ Y
Sbjct: 128 YRNKASIPVRSVNGVLETGFFRKHSHTLVPVEDFFIQQPEIDEVVIAVRDLLRKFGLKAY 187
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
+E + TG +R V + R + +I +++ +R + K++ L L
Sbjct: 188 NEIENTGFVRNVVV-------------RRAHATGEIMVIFVTR---KASFFKVDGLLNAL 231
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVG---GIDISLAPSS 276
+ + I S+ N ST N IFG+ W L G+ DF ++ DIS APS
Sbjct: 232 TKQFPA------IKSIMQNVNASTGNNIFGSDWNVLFGQ-DFITDIMLERKYDIS-APS- 282
Query: 277 FGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q NT A ++L K ++ A V D Y+G G IGLS A K + V VE+ + +
Sbjct: 283 FYQVNTPAAEVLYAKAIEFADLNAEDVVIDAYSGIGTIGLSFA--DKVKHVYGVEVVEAA 340
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHAL 391
+ K +D N+++ W++ DV++VDPPRKGLD S + +
Sbjct: 341 VENARKNAEL--NGID-NVTYVTGKAEKVMGDWVIEGVKPDVILVDPPRKGLDESFITSA 397
Query: 392 QSIGSA 397
S+G+
Sbjct: 398 ASVGAG 403
>gi|336236824|ref|YP_004589440.1| TrmA family RNA methyltransferase [Geobacillus thermoglucosidasius
C56-YS93]
gi|335363679|gb|AEH49359.1| RNA methyltransferase, TrmA family [Geobacillus thermoglucosidasius
C56-YS93]
Length = 459
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 81/352 (23%), Positives = 150/352 (42%), Gaps = 42/352 (11%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDFTFDSCRL-----YGWRCRAK 105
CP ++ C GC + ++ + + IG L+ + + +R +A+
Sbjct: 78 CPIYKQCGGCQLQHLSYDGQLRAKQKQVKEVMARIGKLENVIVHPVIGMKNPWRYRNKAQ 137
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
+ V ++G YQE +H ++D+ C +A V +++ ++ + Y+E
Sbjct: 138 VPVGEREGRLVVGFYQERSHEIIDMDACLIQQEMNDAVVRTVKKICEKYRIPVYNEATHK 197
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRNGG 224
G LR++ MA RY ++ +V +R + P+ K+ + + E +
Sbjct: 198 GVLRHI-MA------------RYGAATQEVMVVLITRTAELPHKKKIVQEIIESVPN--- 241
Query: 225 SRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRA 284
+ S+ N NVI G+ + L G ++ +G I +++ SF Q N
Sbjct: 242 -------VKSIIQNINPKKTNVIMGDETKVLWGAEYIYDYIGDIQFAISARSFYQVNPAQ 294
Query: 285 FDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTV 342
+L K +Y +V D Y G G I L L A+K + V VE+ E+ + K
Sbjct: 295 TKVLYEKALEYAQLTGEETVIDAYCGIGTISLFL--AKKAKKVFGVEVVPEA-IEDAKRN 351
Query: 343 SRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + + + A+ I W + +D +VVDPPRKG D +L+ +
Sbjct: 352 AALNRITNVEFAVGEAEAVIP--KWYKQGIRADCIVVDPPRKGCDETLLQTI 401
>gi|418976548|ref|ZP_13524416.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
SK575]
gi|383351300|gb|EID29106.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
SK575]
Length = 452
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 75/302 (24%), Positives = 141/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + + G +++ +H+++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGALETGFFRKNSHDLMPLEDFFIQDPVIDEVVVGLRDLLRRYDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVILVTTR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG W L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWCTLYGQDFITDQMLGNDYQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAALKSDDVVIDAYSGIGTIGLSV--AKYVKEVYGVEVIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K ++L + + A+N+++ +WL + V++VDPPRKGL S + A
Sbjct: 342 SKKN-AQLNHISNAHYVCDTAENAMK--NWLKEGIQPSVILVDPPRKGLTESFIKASAQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|385822897|ref|YP_005859239.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lactobacillus casei
BD-II]
gi|327385224|gb|AEA56698.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lactobacillus casei
BD-II]
Length = 454
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 137/301 (45%), Gaps = 38/301 (12%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + G Y++ +H++V I P+I+ A+ ++R +++ +V
Sbjct: 127 GYRNKAQVPVRTVNGELQTGFYKKHSHDLVPIEDFLIQDPKIDQAIVVVRDLLRKYHVPA 186
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPN-SDKLESLAE 217
YDE G +R + + Y Q+ +V S+ + P+ D +E +
Sbjct: 187 YDERANKGVIRNIMVRRGHYTK-------------QMMIVLVSQTWQVPHLKDIVEEITL 233
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
L + SV N NVI G + R + GE + + G + ++P SF
Sbjct: 234 ALPE----------VTSVVVNLNDKRTNVILGRKSRTIYGEDYLLDKLLGSEFQISPVSF 283
Query: 278 GQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q N ++L +K + +V D Y+G G I L++ AR + V VE+ + +
Sbjct: 284 YQVNPVQTEVLYKKAIEAAGLTGKENVIDAYSGIGTISLTM--ARHAKHVYGVEVVEPAV 341
Query: 336 LSFEKTVSRLPKSVDGNISWH--NADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHA 390
R +D N+++ A+ I+ W + DVL+VDPPRKGLD S + A
Sbjct: 342 RDARANAVR--NHID-NVTFEVGKAEEVIQ--RWKDNELPVDVLMVDPPRKGLDKSFIDA 396
Query: 391 L 391
+
Sbjct: 397 V 397
>gi|428773959|ref|YP_007165747.1| 23S rRNA m(5)U-1939 methyltransferase [Cyanobacterium stanieri PCC
7202]
gi|428688238|gb|AFZ48098.1| 23S rRNA m(5)U-1939 methyltransferase [Cyanobacterium stanieri PCC
7202]
Length = 452
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 130/301 (43%), Gaps = 46/301 (15%)
Query: 106 LAVRGTSTSPL---------IGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNV 156
LA R ++ PL G Y+EG+H ++++ C R+N + ++Q ++EL +
Sbjct: 123 LAYRNKASYPLGMSDNGNIKAGYYREGSHQIINLNQCPIQDERLNPLLAEIKQDLQELGI 182
Query: 157 EPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLA 216
YDE+ + G LR++ + NT G++ IT+V P++ KL A
Sbjct: 183 PIYDENTKKGILRHLCFRIGK-NT----------GEILITIVIT-----KPSNYKLAQQA 226
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
LW R + V N+ NVIFG L G E G+ +L S
Sbjct: 227 P-LW-----LERYANVVGVTLNYNPRPTNVIFGEETELLAGRLYLKEEFAGLTFTLRTES 280
Query: 277 FGQANTRAFDILLR------KLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEI 330
F Q NT + L LQ + +V DLY G G L+L A+K + V +E
Sbjct: 281 FFQVNTNVAESLFTWVIDELNLQGH----ETVIDLYCGIGT--LTLPIAKKVQKVIGIEF 334
Query: 331 NKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHA 390
+K ++ E + N+ + + + +DV+++DPPRKG ++ A
Sbjct: 335 DK---IAIELANHNAVINDIDNVKFMEGKSEVIFPELTTDADVVILDPPRKGCQPEVIEA 391
Query: 391 L 391
L
Sbjct: 392 L 392
>gi|191638003|ref|YP_001987169.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus casei BL23]
gi|385819753|ref|YP_005856140.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lactobacillus casei
LC2W]
gi|190712305|emb|CAQ66311.1| tRNA (Uracil-5-)-methyltransferase [Lactobacillus casei BL23]
gi|327382080|gb|AEA53556.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lactobacillus casei
LC2W]
Length = 457
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 137/301 (45%), Gaps = 38/301 (12%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + G Y++ +H++V I P+I+ A+ ++R +++ +V
Sbjct: 130 GYRNKAQVPVRTVNGELQTGFYKKHSHDLVPIEDFLIQDPKIDQAIVVVRDLLRKYHVPA 189
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPN-SDKLESLAE 217
YDE G +R + + Y Q+ +V S+ + P+ D +E +
Sbjct: 190 YDERANKGVIRNIMVRRGHYTK-------------QMMIVLVSQTWQVPHLKDIVEEITL 236
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
L + SV N NVI G + R + GE + + G + ++P SF
Sbjct: 237 ALPE----------VTSVVVNLNDKRTNVILGRKSRTIYGEDYLLDKLLGSEFQISPVSF 286
Query: 278 GQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q N ++L +K + +V D Y+G G I L++ AR + V VE+ + +
Sbjct: 287 YQVNPVQTEVLYKKAIEAAGLTGKENVIDAYSGIGTISLTM--ARHAKHVYGVEVVEPAV 344
Query: 336 LSFEKTVSRLPKSVDGNISWH--NADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHA 390
R +D N+++ A+ I+ W + DVL+VDPPRKGLD S + A
Sbjct: 345 RDARANAVR--NHID-NVTFEVGKAEEVIQ--RWKDNELPVDVLMVDPPRKGLDKSFIDA 399
Query: 391 L 391
+
Sbjct: 400 V 400
>gi|407718908|ref|YP_006796313.1| RNA m5u methyltransferase family protein [Leuconostoc carnosum
JB16]
gi|407242664|gb|AFT82314.1| RNA m5u methyltransferase family protein [Leuconostoc carnosum
JB16]
Length = 496
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 85/338 (25%), Positives = 148/338 (43%), Gaps = 66/338 (19%)
Query: 74 IVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVD 129
++ +A + F+ G D+ T Y +R +A+ VR +G+Y+ TH++VD
Sbjct: 141 VIMQALEKFQPRGWSDYDLRDTIGMADPYQYRNKAQFPVRKIGDKISVGMYKRSTHDLVD 200
Query: 130 IPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYR 189
+P + +R+ + +L+V Y+ED G ++ + + V+ +
Sbjct: 201 LPVVHTQDQTTMIVMRTIRELLDKLSVSIYNEDKNRGTVKTIVVRVS-----------HT 249
Query: 190 NGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIF 248
G+ Q+T V N+ + P L E++ + L + G ++ NF ++++
Sbjct: 250 TGEAQVTFVTNT--DAFPGDTALIEAINKALPQVTG----------IFQNFNPGRTSLVW 297
Query: 249 GNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKY--VPYGASVTDLY 306
G L G+ E V G L+P +F Q N ++ ++ + + + + D Y
Sbjct: 298 GEETIKLWGQDYIEETVLGKTFQLSPRAFMQLNYTQMSVVYKEALEALDLTHADKLVDAY 357
Query: 307 AGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSV-DGNISWHNAD-NSIEP 364
AG G IGLSLA K V+ +EI +P++V D NI NA N +
Sbjct: 358 AGVGTIGLSLAD--KVDEVRGMEI--------------IPEAVDDANI---NAKINHVNN 398
Query: 365 LSWLVGS---------------DVLVVDPPRKGLDSSL 387
+ VG+ D LVVDPPR GLD++L
Sbjct: 399 AKYEVGTAEELFPKWQSEGWVADALVVDPPRTGLDTAL 436
>gi|423089903|ref|ZP_17078249.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium difficile
70-100-2010]
gi|357557433|gb|EHJ38976.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium difficile
70-100-2010]
Length = 452
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 88/357 (24%), Positives = 151/357 (42%), Gaps = 50/357 (14%)
Query: 56 HFQSCSGCT---HEFNLHRPIIVDEATDFFKSIGLLD--FTFDSCRL---YGWRCRAKLA 107
+ + C GC ++N + +E IG L+ D+ + Y +R +A+
Sbjct: 75 NLRDCGGCQIQDLDYNKQLEMKTNEVKQVLSRIGKLEDVEVHDTIGMDNPYRYRNKAQFP 134
Query: 108 VRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGD 167
++ + P+IG Y++ TH+V+ C H + V++++ I+ V YDE TG
Sbjct: 135 IQKNNGIPIIGFYKKKTHDVISTEKCVIQHEINDKIVKIIKTYIRAYKVSIYDEKTHTGL 194
Query: 168 LRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRS 227
+R+ L + +V + LV N K P L+ LA L N
Sbjct: 195 IRH-----------LVTKIGFTTKEVMVVLVANGN--KLP---YLKELASVLKENIPG-- 236
Query: 228 REHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDI 287
++ N N I G + G+ + +G + ++P SF Q N +
Sbjct: 237 ----FKTLVVNVNQKDTNAILGRENIVIYGDGKINDYIGDLVFEISPLSFFQVNPVQTKV 292
Query: 288 LLRKLQKYVPYG--ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRL 345
L K +Y +V D+Y G G I L L A+K + V +EI ++ + K ++L
Sbjct: 293 LYDKALEYANLNDTDTVFDIYCGIGTISLFL--AQKAKKVYGIEIIDDA-IKDAKINAKL 349
Query: 346 PKSVDGNISWHNAD------NSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHALQSI 394
+ HNA+ I P + G ++V+VVDPPRKG D ++ + S+
Sbjct: 350 N-------NIHNAEFYVGKAEEIVPKMYREGKTANVVVVDPPRKGCDEKVLETIVSM 399
>gi|417939845|ref|ZP_12583133.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
SK313]
gi|343388726|gb|EGV01311.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
SK313]
Length = 453
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 75/304 (24%), Positives = 137/304 (45%), Gaps = 36/304 (11%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGILETGFFRKNSHDLMPLKDFFIQDPVIDEVVVALRDLLRRYDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + L P +++ L E L
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVILATTR-----PKVFRVDQLIEQL 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG W+ L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWKTLYGQDYITDQMLGNDFQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELREDDVVIDAYSGIGTIGLSV--AKHVKEVYGVEVIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPL--SWL---VGSDVLVVDPPRKGLDSSLVHALQ 392
+K S++G + H ++ E +WL + +++VDPPRKGL S + A
Sbjct: 342 SQKNA-----SINGITNAHYVCDTTENAMKNWLKEGIKPSLILVDPPRKGLTESFIKASS 396
Query: 393 SIGS 396
G+
Sbjct: 397 QTGA 400
>gi|227535460|ref|ZP_03965509.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
gi|227186870|gb|EEI66937.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
Length = 457
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 137/301 (45%), Gaps = 38/301 (12%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + G Y++ +H++V I P+I+ A+ ++R +++ +V
Sbjct: 130 GYRNKAQVPVRTVNGELQTGFYKKHSHDLVPIEDFLIQDPKIDQAIVVVRDLLRKYHVPA 189
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPN-SDKLESLAE 217
YDE G +R + + Y Q+ +V S+ + P+ D +E +
Sbjct: 190 YDERANKGVIRNIMVRRGHYTK-------------QMMIVLVSQTWQVPHLKDIVEEITL 236
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
L + SV N NVI G + R + GE + + G + ++P SF
Sbjct: 237 ALPE----------VTSVVVNLNDKRTNVILGRKSRTIYGEDYLLDKLLGSEFQISPVSF 286
Query: 278 GQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q N ++L +K + +V D Y+G G I L++ AR + V VE+ + +
Sbjct: 287 YQVNPVQTEVLYKKAIEAAGLTGKENVIDAYSGIGTISLTM--ARHAKHVYGVEVVEPAV 344
Query: 336 LSFEKTVSRLPKSVDGNISWH--NADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHA 390
R +D N+++ A+ I+ W + DVL+VDPPRKGLD S + A
Sbjct: 345 RDARANAVR--NHID-NVTFEVGKAEEVIQ--RWKDNELPVDVLMVDPPRKGLDKSFIDA 399
Query: 391 L 391
+
Sbjct: 400 V 400
>gi|401565317|ref|ZP_10806157.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sp.
FOBRC6]
gi|400187906|gb|EJO22096.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sp.
FOBRC6]
Length = 466
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 86/354 (24%), Positives = 143/354 (40%), Gaps = 65/354 (18%)
Query: 54 CPHFQSCSGC-----THEFNLH--RPIIVDEATDFFKSIGLL-DFTFDSCRLYGWRCRAK 105
C + C GC ++E LH R +VD T K +L + T + + +R + +
Sbjct: 86 CEIYDECGGCQLQHLSYEEQLHAKRAQVVDALTHIGKLPQILVNETLRADDTWNYRNKMQ 145
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
+ ++G + +G+H +++ +C N + + ++L++ Y+ED
Sbjct: 146 FPIGLHKGRLVVGCFAQGSHRIINTENCHIQRSANNELANTVHEVAEKLHIPVYNEDTHK 205
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGS 225
G LR++ V R G++ +V ++ + P + L
Sbjct: 206 GILRHIVGRVG------------RRGELMAVIVTATK--QLPRAKDFVRLL--------- 242
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
R R ++ SV N QT NNVI G L G + +G ++ ++P SF Q NTR
Sbjct: 243 RERLPHLVSVHQNIQTYRNNVIMGRDTELLWGRPTILDTLGRLNFHISPRSFFQVNTRQA 302
Query: 286 DILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
+ L + Y +V D Y G G I L L A+K R V +EI + + L K
Sbjct: 303 ERLYEQALTYADLHGTETVIDAYCGTGTITLFL--AQKARKVYGIEIVQPAILDARKNAR 360
Query: 344 RLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPPRKG 382
DN ++ ++VG DV+VVDPPR G
Sbjct: 361 ---------------DNHVKNAEFIVGDATAVMPALYKQGIRPDVVVVDPPRAG 399
>gi|296132411|ref|YP_003639658.1| RNA methyltransferase, TrmA family [Thermincola potens JR]
gi|296030989|gb|ADG81757.1| RNA methyltransferase, TrmA family [Thermincola potens JR]
Length = 457
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 101/373 (27%), Positives = 160/373 (42%), Gaps = 41/373 (10%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKL 106
CP F C G + + + ++ D A +G + F WR R K
Sbjct: 77 CPDFFKCGGSHLQHISYSAQLAFKQKVVAD-AVQRIGKLGDVPVHFPIGMEMPWRYRNKA 135
Query: 107 AVRGTSTSPLI--GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
A + + I G + E TH VV C H +I+ ++ + + V YD
Sbjct: 136 AFQVADDNGRIRLGFFAEETHQVVAAYDCMLLHRQISEFAAVVEMLLNKYKVPAYDWKTH 195
Query: 165 TGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGG 224
G LR+V + + + KV I LV S EK N L ++A L RN
Sbjct: 196 RGVLRHVVI-----------RRSWAHNKVMIVLVTTS--EKCIN---LHAMARDLHRNPS 239
Query: 225 SRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRA 284
+ SV N IFGN L G + + G+ ++P+SF Q N
Sbjct: 240 -------VVSVVRNINDGPGRNIFGNSNVVLAGRETIEDKLCGLTFVISPTSFFQVNPVQ 292
Query: 285 FDILLRKLQKY-VPYGA-SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTV 342
+IL +K+++Y V G +V DLY G G I L L A+ V +E++ E+ ++
Sbjct: 293 TEILYQKVRQYAVETGKETVLDLYCGIGTIALYL--AQFTEKVIGLEVH-EAAVADAAAN 349
Query: 343 SRLPKSVDGNISWHNADNSIEPLSWL-VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKA 401
+R+ + A++ + L+ V +DV+VVDPPRKG+D + A+ IG +
Sbjct: 350 ARINGIGNAEFIVGRAEDRLPKLAAQGVKADVVVVDPPRKGVDKRALQAICDIGP--ERI 407
Query: 402 KSLSESSSSMVKE 414
+S S+SM ++
Sbjct: 408 VYVSCDSASMARD 420
>gi|357050015|ref|ZP_09111228.1| hypothetical protein HMPREF9478_01211 [Enterococcus saccharolyticus
30_1]
gi|355382326|gb|EHG29425.1| hypothetical protein HMPREF9478_01211 [Enterococcus saccharolyticus
30_1]
Length = 458
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 89/357 (24%), Positives = 148/357 (41%), Gaps = 48/357 (13%)
Query: 54 CPHFQSCSGCTHEFNLH------RPIIVDEATDFFKSIG----LLDFTFDSCRLYGWRCR 103
C + C GC + ++ + ++ +A FK G +L T + +R +
Sbjct: 76 CKFYDRCGGCQLQHLVYEKQLDFKKDLLKQALTKFKPKGYQKYILKDTIGMEEPWHYRNK 135
Query: 104 AKLAVRGTSTSPLI--GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDE 161
A+ +R + S I GLY+ +H +V I C V L Q + + + Y E
Sbjct: 136 AQFQLRYDTKSKRIEAGLYEMDSHRLVAIDDCLVQEKATQDVVNGLVQLLNKYQLPIYAE 195
Query: 162 DDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
+G LR + + V G+VQ+ + NS N+ L R
Sbjct: 196 RKNSGILRTLMVRVGR-----------ATGEVQVVFITNSSKLPQKNA---------LIR 235
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
R + + S+ N Q+ +VI G+ HL G+ E + + L+P +F Q N
Sbjct: 236 EINQRMPQ--VVSIMQNVQSKKTSVIMGDETLHLWGKEAIEERLQELTFDLSPRAFFQLN 293
Query: 282 TRAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+ IL + K + +V D Y G G IGLSLA + + V+ ++I ++ + +
Sbjct: 294 PQQTSILYDEAIKALALTKNETVVDAYCGVGTIGLSLA--KHAKEVRGMDIIPQAIENAK 351
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPL--SWLVGS---DVLVVDPPRKGLDSSLVHAL 391
+ R+ + + H + E L W D +VVDPPR GLD L+ AL
Sbjct: 352 ENARRIQAN-----NTHYETGTAEDLLPKWFAAGFRPDSIVVDPPRTGLDDHLLQAL 403
>gi|301066110|ref|YP_003788133.1| tRNA (uracil-5-)-methyltransferase-like protein [Lactobacillus
casei str. Zhang]
gi|300438517|gb|ADK18283.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
casei str. Zhang]
Length = 454
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 137/301 (45%), Gaps = 38/301 (12%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + G Y++ +H++V I P+I+ A+ ++R +++ +V
Sbjct: 127 GYRNKAQVPVRTVNGELQTGFYKKHSHDLVPIEDFLIQDPKIDQAIVVVRDLLRKYHVPA 186
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPN-SDKLESLAE 217
YDE G +R + + Y Q+ +V S+ + P+ D +E +
Sbjct: 187 YDERANKGVIRNIMVRRGHYTK-------------QMMIVLVSQTWQVPHLKDIVEEITL 233
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
L + SV N NVI G + R + GE + + G + ++P SF
Sbjct: 234 ALPE----------VTSVVVNLNDKRTNVILGRKSRTIYGEDYLLDKLLGSEFQISPVSF 283
Query: 278 GQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q N ++L +K + +V D Y+G G I L++ AR + V VE+ + +
Sbjct: 284 YQVNPVQTEVLYKKAIEAAGLTGKKNVIDAYSGIGTISLTM--ARHAKHVYGVEVVEPAV 341
Query: 336 LSFEKTVSRLPKSVDGNISWH--NADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHA 390
R +D N+++ A+ I+ W + DVL+VDPPRKGLD S + A
Sbjct: 342 RDARANAVR--NHID-NVTFEVGKAEEVIQ--RWKDNELPVDVLMVDPPRKGLDKSFIDA 396
Query: 391 L 391
+
Sbjct: 397 V 397
>gi|163814586|ref|ZP_02205975.1| hypothetical protein COPEUT_00737 [Coprococcus eutactus ATCC 27759]
gi|158450221|gb|EDP27216.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Coprococcus eutactus
ATCC 27759]
Length = 507
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 82/316 (25%), Positives = 139/316 (43%), Gaps = 63/316 (19%)
Query: 98 YGWRCRAKLAV-RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNV 156
+ +R +A+ V R + +IG Y +H+++D C P + V ++R I++ ++
Sbjct: 175 FHYRNKAQFPVGRDKNGDVVIGFYAGRSHDIIDTESCAIGAPVNDQIVAIVRSFIEDNHI 234
Query: 157 EPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLA 216
YDE+ G +R++ + V + ++ + LV N K P+S+ L +
Sbjct: 235 STYDEETGRGLVRHILIRVG-----------FTTKEIMVCLVTNGN--KLPHSEIL--ID 279
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
E + +G + S+ N N I G++ L G++ + +G I ++P S
Sbjct: 280 ELVKIDG--------MTSICLNVNMENTNRILGDKCITLWGQSYITDYIGDIKYQISPLS 331
Query: 277 FGQANTRAFDILLRKLQKYVPYGASVT--DLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q N ++L K +Y T D+Y G G I L L A+K + V VEI
Sbjct: 332 FYQVNPVQTNVLYNKALEYADLSGDETVWDMYCGIGTISLFL--AQKAKKVYGVEI---- 385
Query: 335 QLSFEKTVSRLPKSVDGNISWHNAD-NSIEPLSWLVG------------------SDVLV 375
+P+++D + HNA+ N I + VG +DV+V
Sbjct: 386 ----------VPQAIDD--ARHNAEINGITNAEFFVGKAEEVVPDIYKKGGDGSHADVVV 433
Query: 376 VDPPRKGLDSSLVHAL 391
VDPPRKG D L+ L
Sbjct: 434 VDPPRKGCDQVLLDTL 449
>gi|329920434|ref|ZP_08277166.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
SPIN 1401G]
gi|328936110|gb|EGG32563.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
SPIN 1401G]
Length = 448
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 154/325 (47%), Gaps = 43/325 (13%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A++ VR + +G +++ +H++V + +I+AAV +R +++ NV
Sbjct: 122 AYRNKAQVPVRMVNGQLEVGFFRKHSHDLVPMTDFLTTDKKIDAAVVAVRDILRKFNVPA 181
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNS--DKLESLA 216
YDE G++RY+++ NG++ I LV ++ K+ ++ ++SL
Sbjct: 182 YDEIKHNGEVRYLEI-----------RRSKANGQLMIVLVCLHKSFKNLDAVVQAIQSLD 230
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
+ V N NVI G + L G + + +G + ++ S
Sbjct: 231 N--------------VACVILNHNPHKTNVILGEKEYILAGNGEIVDKIGDLSFKISSQS 276
Query: 277 FGQANT----RAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
F Q N+ R +++ ++K Q + V D Y+G G IGLS+ A+ + V VEI +
Sbjct: 277 FFQINSLQTPRLYNLAIQKAQ--LTANDVVIDAYSGIGTIGLSV--AKHVKKVLGVEIVR 332
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVH 389
++ +K + + V+ + + P W + +DV+ VDPPRKGL + +
Sbjct: 333 DAVKDAKK--NAILNGVNNAEYFEGKAEELMP-QWANEGLKTDVIFVDPPRKGLTDTFIK 389
Query: 390 ALQSIGSAERKAKSLSESSSSMVKE 414
A ++ ++ +K +S + ++M+++
Sbjct: 390 A--AVATSPKKIVYISCNPATMIRD 412
>gi|126701016|ref|YP_001089913.1| 23S rRNA (uracil-5-)-methyltransferase RumA (23S
rRNA(M-5-U1939)-methyltransferase) [Clostridium
difficile 630]
gi|115252453|emb|CAJ70296.1| 23S rRNA (uracil-5-)-methyltransferase RumA (23S
rRNA(M-5-U1939)-methyltransferase) [Clostridium
difficile 630]
Length = 454
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 87/357 (24%), Positives = 152/357 (42%), Gaps = 50/357 (14%)
Query: 56 HFQSCSGCT---HEFNLHRPIIVDEATDFFKSIGLLD--FTFDSCRL---YGWRCRAKLA 107
+ + C GC ++N + +E IG L+ D+ + Y +R +A+
Sbjct: 75 NLRDCGGCQIQDLDYNKQLEMKTNEVKQVLSRIGKLEDVEVHDTIGMDNPYRYRNKAQFP 134
Query: 108 VRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGD 167
++ + P+IG Y++ TH+V+ C H + V++++ I+ V YDE TG
Sbjct: 135 IQKNNGIPIIGFYKKKTHDVISTEKCVIQHEINDKIVKIIKTYIRAYKVSIYDEKTHTGL 194
Query: 168 LRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRS 227
+R++ + + +V + LV N K P L+ LA L N
Sbjct: 195 IRHLVTKIG-----------FTTKEVMVVLVANGN--KLP---YLKELASVLKENIPG-- 236
Query: 228 REHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDI 287
++ N N I G + G+ + +G + ++P SF Q N +
Sbjct: 237 ----FKTLVVNVNQKDTNAILGRENIVIYGDGKINDYIGDLVFEISPLSFFQVNPVQTKV 292
Query: 288 LLRKLQKYVPYG--ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRL 345
L K +Y +V D+Y G G I L L A+K + V +EI ++ + K ++L
Sbjct: 293 LYDKALEYANLNDTDTVFDIYCGIGTISLFL--AQKAKKVYGIEIIDDA-IKDAKINAKL 349
Query: 346 PKSVDGNISWHNAD------NSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHALQSI 394
+ HNA+ I P + G ++V+VVDPPRKG D ++ + S+
Sbjct: 350 N-------NIHNAEFYVGKAEEIVPKMYREGKTANVVVVDPPRKGCDEKVLETIVSM 399
>gi|255094342|ref|ZP_05323820.1| putative RNA methyltransferase [Clostridium difficile CIP 107932]
gi|255316095|ref|ZP_05357678.1| putative RNA methyltransferase [Clostridium difficile QCD-76w55]
gi|255518756|ref|ZP_05386432.1| putative RNA methyltransferase [Clostridium difficile QCD-97b34]
gi|260684898|ref|YP_003216183.1| RNA methyltransferase [Clostridium difficile CD196]
gi|260688556|ref|YP_003219690.1| RNA methyltransferase [Clostridium difficile R20291]
gi|384362567|ref|YP_006200419.1| RNA methyltransferase [Clostridium difficile BI1]
gi|260211061|emb|CBA66419.1| putative RNA methyltransferase [Clostridium difficile CD196]
gi|260214573|emb|CBE07127.1| putative RNA methyltransferase [Clostridium difficile R20291]
Length = 452
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 87/357 (24%), Positives = 152/357 (42%), Gaps = 50/357 (14%)
Query: 56 HFQSCSGCT---HEFNLHRPIIVDEATDFFKSIGLLD--FTFDSCRL---YGWRCRAKLA 107
+ + C GC ++N + +E IG L+ D+ + Y +R +A+
Sbjct: 75 NLRDCGGCQIQDLDYNKQLEMKTNEVKQVLSRIGKLEDVEVHDTIGMDNPYRYRNKAQFP 134
Query: 108 VRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGD 167
++ + P+IG Y++ TH+V+ C H + V++++ I+ V YDE TG
Sbjct: 135 IQKNNGIPIIGFYKKKTHDVISTEKCVIQHEINDKIVKIIKTYIRAYKVSIYDEKTHTGL 194
Query: 168 LRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRS 227
+R++ + + +V + LV N K P L+ LA L N
Sbjct: 195 IRHLVTKIG-----------FTTKEVMVVLVANGN--KLP---YLKELASVLKENIPG-- 236
Query: 228 REHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDI 287
++ N N I G + G+ + +G + ++P SF Q N +
Sbjct: 237 ----FKTLVVNVNQKDTNAILGRENIVIYGDGKINDYIGDLVFEISPLSFFQVNPVQTKV 292
Query: 288 LLRKLQKYVPYG--ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRL 345
L K +Y +V D+Y G G I L L A+K + V +EI ++ + K ++L
Sbjct: 293 LYDKALEYANLNDTDTVFDIYCGIGTISLFL--AQKAKKVYGIEIIDDA-IKDAKINAKL 349
Query: 346 PKSVDGNISWHNAD------NSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHALQSI 394
+ HNA+ I P + G ++V+VVDPPRKG D ++ + S+
Sbjct: 350 N-------NIHNAEFYVGKAEEIVPKMYREGKTANVVVVDPPRKGCDEKVLETIVSM 399
>gi|422343785|ref|ZP_16424712.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas noxia
F0398]
gi|355378201|gb|EHG25392.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas noxia
F0398]
Length = 465
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 82/361 (22%), Positives = 144/361 (39%), Gaps = 65/361 (18%)
Query: 53 QCPHFQSCSGCT-------HEFNLHRPIIVDEATDFFKSIGL-LDFTFDSCRLYGWRCRA 104
C + C GC + + R + + T K + + T + + +R +
Sbjct: 84 HCEIYADCGGCQLQHLSYEAQLDAKRAQVAEALTHIGKLSQIPVKETMRAEEPWNYRNKM 143
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+ + L+G + +G+HN++D +C H N +R ++ L++ Y+ED
Sbjct: 144 QFPIGINKGKILVGCFAQGSHNIIDTKNCHIQHTANNDLGNAMRDIVEHLHIPVYNEDTH 203
Query: 165 TGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGG 224
G +R++ V RN + +V ++ + P + + +
Sbjct: 204 KGVMRHIIGRVG------------RNNDLMAVIVTATK--RLPRAKDVVRML-------- 241
Query: 225 SRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRA 284
R R + S+ N QT NNVI G + L G +++G ++ ++P SF Q NTR
Sbjct: 242 -RERLPNLVSIHQNIQTYHNNVIMGRDTQLLWGRPTIIDSLGRLNFHISPRSFFQVNTRQ 300
Query: 285 FDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTV 342
+ L + Y +V D Y G G I L L A++ R V +EI + + L K
Sbjct: 301 AERLYEQTLAYADLHGTETVIDAYCGTGTITLFL--AQRARKVYGIEIVQPAILDARKNA 358
Query: 343 SRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPPRKGLDSSL 387
DN I+ ++VG DV+VVDPPR G ++
Sbjct: 359 R---------------DNHIKNAEFIVGDATAVMPALYKQGIRPDVVVVDPPRAGCSETV 403
Query: 388 V 388
+
Sbjct: 404 L 404
>gi|418010491|ref|ZP_12650268.1| TrmA family RNA methyltransferase [Lactobacillus casei Lc-10]
gi|410553980|gb|EKQ27968.1| TrmA family RNA methyltransferase [Lactobacillus casei Lc-10]
Length = 454
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 137/301 (45%), Gaps = 38/301 (12%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + G Y++ +H++V I P+I+ A+ ++R +++ +V
Sbjct: 127 GYRNKAQVPVRTVNGELQTGFYKKHSHDLVPIEDFLIQDPKIDQAIVVVRDLLRKYHVPA 186
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPN-SDKLESLAE 217
YDE G +R + + Y Q+ +V S+ + P+ D +E +
Sbjct: 187 YDERANKGVIRNIMVRRGHYTK-------------QMMIVLVSQTWQVPHLKDIVEEITL 233
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
L + SV N NVI G + R + GE + + G + ++P SF
Sbjct: 234 ALPE----------VTSVVVNLNDKRTNVILGRKSRTIYGEDYLLDKLLGSEFQISPVSF 283
Query: 278 GQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q N ++L +K + +V D Y+G G I L++ AR + V VE+ + +
Sbjct: 284 YQVNPVQTEVLYKKAIEAAGLTGKENVIDAYSGIGTISLTM--ARHAKHVYGVEVVEPAV 341
Query: 336 LSFEKTVSRLPKSVDGNISWH--NADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHA 390
R +D N+++ A+ I+ W + DVL+VDPPRKGLD S + A
Sbjct: 342 RDARANAVR--NHID-NVTFEVGKAEEVIQ--RWKDNELPVDVLMVDPPRKGLDKSFIDA 396
Query: 391 L 391
+
Sbjct: 397 V 397
>gi|379705276|ref|YP_005203735.1| RNA methyltransferase [Streptococcus infantarius subsp. infantarius
CJ18]
gi|374681975|gb|AEZ62264.1| RNA methyltransferase [Streptococcus infantarius subsp. infantarius
CJ18]
Length = 453
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 146/328 (44%), Gaps = 42/328 (12%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
Y +R +A++ VR G Y++ H+++ I I+ + +R ++ +++
Sbjct: 124 YAYRNKAQVPVRRVKGQLETGFYRKNLHDLIPIEDFLIQDKEIDKLIVFVRDLLRRYDLK 183
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
PYDE ++TG +R++ + Y+ Q+ LV+ + K D++
Sbjct: 184 PYDEKEQTGLIRHLVVRRGHYSG-------------QMMLVFVTTRPKVFRIDQV----- 225
Query: 218 FLWRNGGSRSREHY--IHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPS 275
++ E + + S+ N N IFG +R L G+ +++ G D ++
Sbjct: 226 ------IAKITEAFPSVVSIIQNINDKNINAIFGKEFRTLYGQDTITDSMLGNDYEISAQ 279
Query: 276 SFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
SF Q NT + L + + + V D Y+G G IGLS A++ + V VE+ +
Sbjct: 280 SFYQVNTEMAEKLYQTAIDFSDLNSDSIVIDAYSGIGTIGLSF--AKQVKEVYGVEVIET 337
Query: 334 SQLSFEKTVSRLPKSVDGNISWHNADNSIE--PLSWL---VGSDVLVVDPPRKGLDSSLV 388
+ +K R +G + H +S E W + DV++VDPPRKGL S +
Sbjct: 338 AVEDAKKNAER-----NGITNAHYVADSAENAMAKWSKDGIKPDVIIVDPPRKGLTESFI 392
Query: 389 HALQSIGSAERKAKSLSESSSSMVKEEK 416
A S+ K +S + ++M ++ K
Sbjct: 393 KA--SVAMQPEKITYVSCNPATMARDIK 418
>gi|313892229|ref|ZP_07825822.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dialister
microaerophilus UPII 345-E]
gi|313119367|gb|EFR42566.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dialister
microaerophilus UPII 345-E]
Length = 545
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 85/361 (23%), Positives = 147/361 (40%), Gaps = 47/361 (13%)
Query: 45 LPSLTC-ALQCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLDF-----TFDSCRLY 98
+P +TC A Q P +FN + +I IG D + +
Sbjct: 75 IPDVTCGACQIPELSYEGQLKFKFNRVKSVI--------SRIGKQDENKVLPVVSATHIV 126
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R + + + + + G Y+ GTH ++ C + N + + I + +
Sbjct: 127 GYRNKMSIPIGTQNGKAVSGYYKSGTHEIIPSTDCMIQNETNNKLAKFAQDFINKNKITV 186
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
Y+E G +R++ R +G + ++ S NE P +K
Sbjct: 187 YNEKTHKGSVRHI-------------VGRIGDGGKLMAVIVTSTNE-LPCKEK------- 225
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
W +S I S++ N Q NVI GN+ H+ GE ++G + ++P SF
Sbjct: 226 -WIEEMRKSVPEVI-SIYHNVQDKKTNVILGNKMEHIWGEKTLKASIGKLTFEISPYSFF 283
Query: 279 QANTRAFDILLRKLQKYVP-YG-ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q N + L K + +G +V D Y G G I L L A+K + V +EI K+
Sbjct: 284 QVNKEQAEKLYEKALDFANLFGDETVIDAYCGTGTISLYL--AQKAKHVIGIEIIKD--- 338
Query: 337 SFEKTVSRLPKSVDGNISWHNADNSI---EPLSWLVGSDVLVVDPPRKGLDSSLVHALQS 393
+ E ++ N+ +H AD + E + ++V+V+DP R G D ++ A+
Sbjct: 339 AIENAKENAKRNKIKNVEFHAADVAKYLPELAKKGIKAEVMVLDPVRAGCDEKVIEAIGK 398
Query: 394 I 394
I
Sbjct: 399 I 399
>gi|409996864|ref|YP_006751265.1| RNA methyltransferase [Lactobacillus casei W56]
gi|406357876|emb|CCK22146.1| Uncharacterized RNA methyltransferase lp_1151 [Lactobacillus casei
W56]
Length = 469
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 137/301 (45%), Gaps = 38/301 (12%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + G Y++ +H++V I P+I+ A+ ++R +++ +V
Sbjct: 142 GYRNKAQVPVRTVNGELQTGFYKKHSHDLVPIEDFLIQDPKIDQAIVVVRDLLRKYHVPA 201
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPN-SDKLESLAE 217
YDE G +R + + Y Q+ +V S+ + P+ D +E +
Sbjct: 202 YDERANKGVIRNIMVRRGHYTK-------------QMMIVLVSQTWQVPHLKDIVEEITL 248
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
L + SV N NVI G + R + GE + + G + ++P SF
Sbjct: 249 ALPE----------VTSVVVNLNDKRTNVILGRKSRTIYGEDYLLDKLLGSEFQISPVSF 298
Query: 278 GQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q N ++L +K + +V D Y+G G I L++ AR + V VE+ + +
Sbjct: 299 YQVNPVQTEVLYKKAIEAAGLTGKENVIDAYSGIGTISLTM--ARHAKHVYGVEVVEPAV 356
Query: 336 LSFEKTVSRLPKSVDGNISWH--NADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHA 390
R +D N+++ A+ I+ W + DVL+VDPPRKGLD S + A
Sbjct: 357 RDARANAVR--NHID-NVTFEVGKAEEVIQ--RWKDNELPVDVLMVDPPRKGLDKSFIDA 411
Query: 391 L 391
+
Sbjct: 412 V 412
>gi|417995861|ref|ZP_12636148.1| TrmA family RNA methyltransferase [Lactobacillus casei M36]
gi|417998776|ref|ZP_12638991.1| TrmA family RNA methyltransferase [Lactobacillus casei T71499]
gi|418004780|ref|ZP_12644790.1| TrmA family RNA methyltransferase [Lactobacillus casei UW1]
gi|418007683|ref|ZP_12647560.1| TrmA family RNA methyltransferase [Lactobacillus casei UW4]
gi|418013452|ref|ZP_12653096.1| TrmA family RNA methyltransferase [Lactobacillus casei Lpc-37]
gi|410536565|gb|EKQ11158.1| TrmA family RNA methyltransferase [Lactobacillus casei M36]
gi|410540380|gb|EKQ14895.1| TrmA family RNA methyltransferase [Lactobacillus casei T71499]
gi|410548399|gb|EKQ22601.1| TrmA family RNA methyltransferase [Lactobacillus casei UW4]
gi|410548711|gb|EKQ22900.1| TrmA family RNA methyltransferase [Lactobacillus casei UW1]
gi|410555978|gb|EKQ29909.1| TrmA family RNA methyltransferase [Lactobacillus casei Lpc-37]
Length = 454
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 137/301 (45%), Gaps = 38/301 (12%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + G Y++ +H++V I P+I+ A+ ++R +++ +V
Sbjct: 127 GYRNKAQVPVRTVNGELQTGFYKKHSHDLVPIEDFLIQDPKIDQAIVVVRDLLRKYHVPA 186
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPN-SDKLESLAE 217
YDE G +R + + Y Q+ +V S+ + P+ D +E +
Sbjct: 187 YDERANKGVIRNIMVRRGHYTK-------------QMMIVLVSQTWQVPHLKDIVEEITL 233
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
L + SV N NVI G + R + GE + + G + ++P SF
Sbjct: 234 ALPE----------VTSVVVNLNDKRTNVILGRKSRTIYGEDYLLDKLLGSEFQISPVSF 283
Query: 278 GQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q N ++L +K + +V D Y+G G I L++ AR + V VE+ + +
Sbjct: 284 YQVNPIQTEVLYKKAIEAAGLTGKENVIDAYSGIGTISLTM--ARHAKHVYGVEVVEPAV 341
Query: 336 LSFEKTVSRLPKSVDGNISWH--NADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHA 390
R +D N+++ A+ I+ W + DVL+VDPPRKGLD S + A
Sbjct: 342 RDARANAVR--NHID-NVTFEVGKAEEVIQ--RWKDNELPVDVLMVDPPRKGLDKSFIDA 396
Query: 391 L 391
+
Sbjct: 397 V 397
>gi|374606025|ref|ZP_09678926.1| RNA methyltransferase, trma family protein [Paenibacillus
dendritiformis C454]
gi|374388353|gb|EHQ59774.1| RNA methyltransferase, trma family protein [Paenibacillus
dendritiformis C454]
Length = 510
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 132/291 (45%), Gaps = 39/291 (13%)
Query: 113 TSPLIGLY-QEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYV 171
T LIG Y + +H ++D H R + A+ +++ ++ +EPY+E+ TG LR+
Sbjct: 197 TGELIGGYFAKASHRIIDTDVSLLQHERNDEAMRAVKRIARKYGIEPYNEETHTGLLRHA 256
Query: 172 QMAVTTYNTSLPASERYRNGKVQITLVWNSR---NEKSPNSDKLESLAEFLWRNGGSRSR 228
M V +R + ITLV N +E +D +E+L +
Sbjct: 257 IMRVG-----------FRTDEQMITLVTNGDKLPHEAEIVADLVEALPQ----------- 294
Query: 229 EHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDIL 288
+ S+ N T NVI G++ R L G + +G I ++ SF Q N ++L
Sbjct: 295 ---LKSICQNINTKRTNVIMGDKTRVLWGSEYITDYIGDIAFKISARSFYQVNPVQTEVL 351
Query: 289 LRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLP 346
K +Y +V D Y G G I L L A++ + V VEI +E+ ++ + + L
Sbjct: 352 YEKAVEYAGLSGQETVIDAYCGIGTISLFL--AQRAQQVLGVEIVEEA-IADARRNAELN 408
Query: 347 KSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+ + A+ I W + DV+VVDPPRKG D +L+ + ++
Sbjct: 409 GITNAEFAVGGAEEVIP--QWKERGLTPDVIVVDPPRKGCDPALLDTMLAM 457
>gi|163789372|ref|ZP_02183811.1| RNA methyltransferase, TrmA family protein [Carnobacterium sp. AT7]
gi|159875226|gb|EDP69291.1| RNA methyltransferase, TrmA family protein [Carnobacterium sp. AT7]
Length = 458
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 74/312 (23%), Positives = 137/312 (43%), Gaps = 60/312 (19%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + G +++ +H V+ + + P+I+ + +R ++E V+P
Sbjct: 132 GYRNKAQIPVRKINDKLTTGFFRKNSHEVIPMENFYIQDPKIDETIIAVRDIMREYGVKP 191
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEK-SPNS----DKLE 213
Y+E++ TG+LR++ + Y G++ I LV +R K P S D +E
Sbjct: 192 YNENENTGNLRHIIV-----------RRGYYTGEIMIVLV--TRTAKLFPTSKIIPDIIE 238
Query: 214 SLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLA 273
++ E + S+ N NVI G+ L GE + + + G ++
Sbjct: 239 AIPEVV--------------SIVQNVNPKHTNVIMGDDAIVLYGEDKYKDTLLGNTFEIS 284
Query: 274 PSSFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAA-ARKCRSVKCV-- 328
SF Q N + + L + + + +V D Y+G G I L+LA A+ ++ +
Sbjct: 285 HRSFYQVNPQQTEKLYQTVLDFAELTGEETVIDAYSGIGTIALTLAKNAKHVYGIEIIEP 344
Query: 329 ---------EINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPP 379
E+N ++FE + + + W + +D+LVVDPP
Sbjct: 345 AVVNAKANAELNNIENVTFEAGAAE-----EVMVQWSEEGRT---------ADLLVVDPP 390
Query: 380 RKGLDSSLVHAL 391
RKGL+ A+
Sbjct: 391 RKGLEKEFTEAV 402
>gi|160878319|ref|YP_001557287.1| RNA methyltransferase [Clostridium phytofermentans ISDg]
gi|160426985|gb|ABX40548.1| RNA methyltransferase, TrmA family [Clostridium phytofermentans
ISDg]
Length = 468
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 135/304 (44%), Gaps = 27/304 (8%)
Query: 98 YGWRCRAKLAV-RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNV 156
Y +R +A+ V + T +IG Y TH+++D C + +R +K+ N+
Sbjct: 129 YYYRNKAQFPVGKRTDGEVVIGFYAGRTHSIIDTAKCHIGDESTEPLIACIRNFLKQENI 188
Query: 157 EPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLA 216
YDE+ G +R++ + V + ++ I +V N + + P SDKL +
Sbjct: 189 SIYDEESHQGLVRHILLRVG-----------FTTKELMICVVINGK--ELPASDKL--IK 233
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
+ L + ++ + S+ N T NVI G L G T + +G I ++P S
Sbjct: 234 QILA--CPNLPKDFRVTSICLNKNTKKTNVILGEEIIPLYGPTYITDYIGDIKYQISPLS 291
Query: 277 FGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q N L Y + V DLY G G I L L A+K + V VEI ++
Sbjct: 292 FYQVNPVQTKKLYELALDYTDLTGNELVWDLYCGIGTISLFL--AQKAKMVYGVEIIPQA 349
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVG----SDVLVVDPPRKGLDSSLVHA 390
+ K+ ++L + A+ + L G +DV+VVDPPRKG D SL+
Sbjct: 350 -IEDAKSNAKLNDINNAEFFVGAAEEVLPKQYQLSGGKIYADVIVVDPPRKGCDESLLET 408
Query: 391 LQSI 394
+ ++
Sbjct: 409 IVAM 412
>gi|417989283|ref|ZP_12629793.1| TrmA family RNA methyltransferase [Lactobacillus casei A2-362]
gi|417992607|ref|ZP_12632962.1| TrmA family RNA methyltransferase [Lactobacillus casei CRF28]
gi|418001683|ref|ZP_12641818.1| TrmA family RNA methyltransferase [Lactobacillus casei UCD174]
gi|410533186|gb|EKQ07873.1| TrmA family RNA methyltransferase [Lactobacillus casei CRF28]
gi|410538886|gb|EKQ13430.1| TrmA family RNA methyltransferase [Lactobacillus casei A2-362]
gi|410545944|gb|EKQ20222.1| TrmA family RNA methyltransferase [Lactobacillus casei UCD174]
Length = 454
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 137/301 (45%), Gaps = 38/301 (12%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + G Y++ +H++V I P+I+ A+ ++R +++ +V
Sbjct: 127 GYRNKAQVPVRTVNGELQTGFYKKHSHDLVPIEDFLIQDPKIDQAIVVVRDLLRKYHVPA 186
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPN-SDKLESLAE 217
YDE G +R + + Y Q+ +V S+ + P+ D +E +
Sbjct: 187 YDERANKGVIRNIMVRRGHYTK-------------QMMIVLVSQTWQVPHLKDIVEEITL 233
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
L + SV N NVI G + R + GE + + G + ++P SF
Sbjct: 234 ALPE----------VTSVVVNLNDKRTNVILGRKSRTIYGEDYLLDKLLGSEFQISPVSF 283
Query: 278 GQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q N ++L +K + +V D Y+G G I L++ AR + V VE+ + +
Sbjct: 284 YQVNPVQTEVLYKKAIEAAGLTGKENVIDAYSGIGTISLTM--ARHAKHVYGVEVVEPAV 341
Query: 336 LSFEKTVSRLPKSVDGNISWH--NADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHA 390
R +D N+++ A+ I+ W + DVL+VDPPRKGLD S + A
Sbjct: 342 RDARANAVR--NHID-NVTFEVGKAEEVIQ--RWKDNELPVDVLMVDPPRKGLDKSFIDA 396
Query: 391 L 391
+
Sbjct: 397 V 397
>gi|379705566|ref|YP_005204025.1| RNA methyl transferase [Streptococcus infantarius subsp.
infantarius CJ18]
gi|374682265|gb|AEZ62554.1| RNA methyl transferase [Streptococcus infantarius subsp.
infantarius CJ18]
Length = 454
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 85/363 (23%), Positives = 162/363 (44%), Gaps = 42/363 (11%)
Query: 78 ATDFFKSIGLLDF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHC 133
A + +K+ G+ D T Y +R +A++ VR + G +++ +H+++ I
Sbjct: 100 ADNLYKTAGISDIEVLETLGMEHPYAYRNKAQVPVRRVNGQLETGFFRKHSHDLMPISDF 159
Query: 134 KAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKV 193
+ I+ + R ++ +++PYDE ++TG +R +L + +G++
Sbjct: 160 YIQNKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIR-----------NLVVRRGHYSGEM 208
Query: 194 QITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWR 253
+ V P ++E + E + + + SV N N IFGN +R
Sbjct: 209 MLVFVTTR-----PKIFRIEQIIEKIVAEFPA------VKSVVQNINDKNTNAIFGNDFR 257
Query: 254 HLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGV 311
L G+ +++ G ++ SF Q NT + L + + A +V D Y+G G
Sbjct: 258 TLYGKDTIVDSMLGNQYEISARSFYQVNTEMAEKLYQTAIDFSDLTADDTVIDAYSGIGT 317
Query: 312 IGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE--PLSWL- 368
IGLS A+ ++V VE+ +E+ ++ +++G + H +S E +W
Sbjct: 318 IGLSF--AKNVKAVYGVEVIEEAVKDAKRNA-----ALNGITNAHYVADSAEHAMATWSK 370
Query: 369 --VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEA 426
+ V++VDPPRKGL + + A S+ K +S + ++M ++ K L K
Sbjct: 371 DGIKPSVILVDPPRKGLTENFIKA--SVAMQPEKVTYISCNPATMARDIKLYQELGYKLQ 428
Query: 427 SVQ 429
VQ
Sbjct: 429 KVQ 431
>gi|449882791|ref|ZP_21784801.1| putative RNA methyltransferase [Streptococcus mutans SA38]
gi|449926485|ref|ZP_21800785.1| putative RNA methyltransferase [Streptococcus mutans 4SM1]
gi|449160637|gb|EMB63889.1| putative RNA methyltransferase [Streptococcus mutans 4SM1]
gi|449250436|gb|EMC48495.1| putative RNA methyltransferase [Streptococcus mutans SA38]
Length = 451
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 86/342 (25%), Positives = 154/342 (45%), Gaps = 46/342 (13%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A++ VR + G +++ +H+++ I I+ + R ++ +++P
Sbjct: 125 AYRNKAQVPVRRVNGQLETGFFRKNSHDLMPIEDYYIQDKEIDRLINFTRDLLRRFDLKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R +L + G++ + LV +R++ ++E + E
Sbjct: 185 YDEKEQTGLIR-----------NLVVRRGHYTGQIMLVLV-TTRSKIF----RIEQMIEK 228
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ S + S+ N N IFG+ +R L GE + + G ++ SF
Sbjct: 229 II------SEFPAVKSIIQNINDRNTNAIFGSEFRTLYGEDTIEDTMLGNRYIISAQSFY 282
Query: 279 QANTRAFDILLRKL-QKYVPYG-----ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
Q NT ++ KL Q + + +V D Y+G G IGLS A+K + V VE+ +
Sbjct: 283 QVNT----VMAEKLYQTAIDFSDLAPDDTVIDAYSGIGTIGLSF--AKKVKDVYGVEVIE 336
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LSWL---VGSDVLVVDPPRKGLDSSL 387
+ EK +++ + H +S E SW + DV++VDPPRKGL S
Sbjct: 337 AAVRDAEKNA-----ALNNITNVHYVSDSAEKAMASWSKRGIKPDVILVDPPRKGLTESF 391
Query: 388 VHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQ 429
+ A S RK +S + ++M ++ K L K VQ
Sbjct: 392 IKA--STAMQPRKITYISCAPATMARDVKLYEELGYKLVKVQ 431
>gi|307704726|ref|ZP_07641623.1| 23S rRNA uracil-5-methyltransferase [Streptococcus mitis SK597]
gi|307621705|gb|EFO00745.1| 23S rRNA uracil-5-methyltransferase [Streptococcus mitis SK597]
Length = 452
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 78/305 (25%), Positives = 140/305 (45%), Gaps = 38/305 (12%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFFIQDPVIDEVVVGLRDLLRRYDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE ++ G +R +L + +G++ + LV P +++ L E L
Sbjct: 186 DEKEQAGLIR-----------NLVVRRGHYSGQIMVILVTTR-----PKIFRVDQLIEQL 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G + + G D +A +F Q
Sbjct: 230 IKQFPD------ITSVMQNINDQNTNSIFGKEWRTLYGRDFITDQMLGNDYQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGA-----SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
NT + L Q + + A V D Y+G G IGLS+ A+ + V VE+ E+
Sbjct: 284 VNTGMAEKL---YQTAIDFAALKEDDVVIDAYSGIGTIGLSV--AKHVKEVYGVEVIPEA 338
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ +K ++L + + A+N+++ +WL + +++VDPPRKGL S + A
Sbjct: 339 VENSKKN-AQLNHISNAHYVCDTAENAMK--NWLKDGIQPSLILVDPPRKGLTESFIKAS 395
Query: 392 QSIGS 396
G+
Sbjct: 396 SQTGA 400
>gi|320547084|ref|ZP_08041380.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus equinus ATCC
9812]
gi|320448210|gb|EFW88957.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus equinus ATCC
9812]
Length = 455
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 80/339 (23%), Positives = 152/339 (44%), Gaps = 38/339 (11%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
Y +R +A++ VR + G +++ +H+++ I + I+ + R ++ +++
Sbjct: 124 YAYRNKAQVPVRRVNGQLETGFFRKHSHDLMPISDFYIQNKEIDRLINFTRDLLRRFDLK 183
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
PYDE ++TG +R +L Y +G++ + V P ++E + E
Sbjct: 184 PYDEKEQTGLIR-----------NLVVRRGYYSGEMMLVFVTTR-----PKIFRIEQIIE 227
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
+ + + S+ N N IFGN +R L G+ +++ G ++ SF
Sbjct: 228 KIVAEFPA------VKSIVQNINDKNTNAIFGNDFRTLYGKDTIVDSMLGNQYEISARSF 281
Query: 278 GQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q NT + L + + A V D Y+G G IGLS A+ ++V VE+ +E+
Sbjct: 282 YQVNTEMAEKLYQTAIDFSDLTADDIVIDAYSGIGTIGLSF--AKNVKAVYGVEVIEEAV 339
Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIE--PLSWL---VGSDVLVVDPPRKGLDSSLVHA 390
++ +++G + H +S E +W + V++VDPPRKGL + + A
Sbjct: 340 EDAKRNA-----ALNGITNAHYVADSAEHAMATWSKNGIKPSVILVDPPRKGLTENFIKA 394
Query: 391 LQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQ 429
S+ K +S + ++M ++ K L K VQ
Sbjct: 395 --SVAMQPEKVTYISCNPATMARDIKLYQELGYKLQKVQ 431
>gi|16329997|ref|NP_440725.1| hypothetical protein sll1967 [Synechocystis sp. PCC 6803]
gi|383321740|ref|YP_005382593.1| hypothetical protein SYNGTI_0831 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|383324909|ref|YP_005385762.1| hypothetical protein SYNPCCP_0830 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|383490793|ref|YP_005408469.1| hypothetical protein SYNPCCN_0830 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|384436060|ref|YP_005650784.1| hypothetical protein SYNGTS_0831 [Synechocystis sp. PCC 6803]
gi|451814156|ref|YP_007450608.1| hypothetical protein MYO_18360 [Synechocystis sp. PCC 6803]
gi|50401741|sp|P73374.1|Y1967_SYNY3 RecName: Full=Uncharacterized RNA methyltransferase sll1967
gi|1652483|dbj|BAA17405.1| sll1967 [Synechocystis sp. PCC 6803]
gi|339273092|dbj|BAK49579.1| hypothetical protein SYNGTS_0831 [Synechocystis sp. PCC 6803]
gi|359271059|dbj|BAL28578.1| hypothetical protein SYNGTI_0831 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|359274229|dbj|BAL31747.1| hypothetical protein SYNPCCN_0830 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|359277399|dbj|BAL34916.1| hypothetical protein SYNPCCP_0830 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|451780125|gb|AGF51094.1| hypothetical protein MYO_18360 [Synechocystis sp. PCC 6803]
Length = 463
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 134/290 (46%), Gaps = 38/290 (13%)
Query: 104 AKLAVRGTSTSPL---------IGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKEL 154
A L R +T PL G Y++G+H +V+I C R+N + +++ I+
Sbjct: 133 ASLGYRNKATYPLSRSKTGQVQAGYYRKGSHRLVNINQCPVQDDRLNLLLTEVKKDIENR 192
Query: 155 NVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLES 214
YDE+ + G LR++ + + R G++ +TL+ S ++ P+ + E
Sbjct: 193 GWSIYDEEKKQGKLRHLSLRIGQ-----------RTGEMLLTLI--SAHKGLPDLE--EQ 237
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
E+L R + + N Q NN IFG+ + G E + SL
Sbjct: 238 AGEWL-------ERYPDLGGICLNIQPEPNNRIFGDETVVIAGRGICREKFADLSFSLGA 290
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
++F Q N+ A ++LL +LQ+ + + + D YAG G L L AR+ R +E+N+
Sbjct: 291 NTFFQVNSGAAELLLTRLQQALNLQGAELLVDAYAGVGTFTLPL--ARQVRQAIAIEVNQ 348
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKG 382
+S ++ + + + + + + + LS + DVL++DPPRKG
Sbjct: 349 DSVHQGQRN-AEINQIANVDFLAGTVETVLPTLSEI--PDVLLLDPPRKG 395
>gi|317969858|ref|ZP_07971248.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp.
CB0205]
Length = 458
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 89/349 (25%), Positives = 152/349 (43%), Gaps = 39/349 (11%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKL 106
C + C GC+ + L R ++ + K ++ + + +G+R RA +
Sbjct: 76 CILAERCGGCSLQHCSSAMQLELKRDLVQQSLSRLAKLETSVEAVWGCEQGFGYRNRALI 135
Query: 107 AVRGTSTSPL-IGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED-DR 164
+ L G Y+ G+H +V++ HC PRI+A +E +++ +++ P D +
Sbjct: 136 PLERAEDGRLRAGYYRRGSHKIVNLNHCPVLDPRIDALIEPIKKDLEKTGW-PVDVNLSA 194
Query: 165 TGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGG 224
G LR++ + V + G++ ITLV + R K LESLA+ W
Sbjct: 195 KGGLRHLALRVGSAT-----------GEILITLVSSHRQLKG-----LESLAQR-WME-- 235
Query: 225 SRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRA 284
R + V N Q +NV+ G + G E GI++ +A +F Q NT
Sbjct: 236 ---RWPEVVGVGLNVQPKASNVVMGPETDLIAGRAWLLEIFDGIELRIAADTFFQVNTAQ 292
Query: 285 FDILLRKLQKYVPYG--ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTV 342
L+ L+++ G A+V D Y+G G L L AR V +E++ LS +
Sbjct: 293 AQRLVEPLRQFFAAGKSATVIDAYSGIGTYSLPL--ARSGLKVLGLEVHP---LSVSQAT 347
Query: 343 SRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHAL 391
+ ++ + AD + L + L+VDPPRKGL + A+
Sbjct: 348 ANAERNGITTAFFEQADVAAVLAERLKMTGSLLVDPPRKGLRGEALGAI 396
>gi|306831715|ref|ZP_07464872.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
gi|325978654|ref|YP_004288370.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
gi|304426140|gb|EFM29255.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
gi|325178582|emb|CBZ48626.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
Length = 453
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 84/361 (23%), Positives = 160/361 (44%), Gaps = 42/361 (11%)
Query: 80 DFFKSIGLLDF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKA 135
+ +K+ G+ D T Y +R +A++ VR + G +++ +H+++ I
Sbjct: 102 NLYKTAGISDIEVSETLGMAHPYAYRNKAQVPVRRVNGQLETGFFRKHSHDLMPISDYYI 161
Query: 136 HHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQI 195
+ I+ + R ++ +++PYDE ++TG +R +L + +GK+ +
Sbjct: 162 QNKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIR-----------NLVVRRGHYSGKMML 210
Query: 196 TLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHL 255
V P ++E + E + + + S+ N NVIFGN ++ L
Sbjct: 211 VFVTT-----RPKIFRIEQIIEKIVAEFPA------VKSIVQNINDKNTNVIFGNEFKTL 259
Query: 256 LGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIG 313
G+ +++ G ++ SF Q NT + L + + V D Y+G G IG
Sbjct: 260 YGKDTIIDSMLGNQYEISARSFYQVNTEMAERLYQTAIDFSDLTPEDIVIDAYSGIGTIG 319
Query: 314 LSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE--PLSWL--- 368
LS A+ ++V VE+ +E+ ++ +++G + H +S E +W
Sbjct: 320 LSF--AKNVKAVYGVEVIEEAVEDAKRNA-----ALNGITNAHYVADSAEHAMATWSKDG 372
Query: 369 VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASV 428
+ V++VDPPRKGL + + A S+ K +S + +SM ++ K L K V
Sbjct: 373 IKPSVILVDPPRKGLTENFIKA--SVAMQPEKITYISCNPASMARDIKLYQELGYKLIKV 430
Query: 429 Q 429
Q
Sbjct: 431 Q 431
>gi|239631838|ref|ZP_04674869.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|417980266|ref|ZP_12620947.1| TrmA family RNA methyltransferase [Lactobacillus casei 12A]
gi|239526303|gb|EEQ65304.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|410525493|gb|EKQ00395.1| TrmA family RNA methyltransferase [Lactobacillus casei 12A]
Length = 453
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 137/301 (45%), Gaps = 38/301 (12%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + G Y++ +H++V I P+I+ A+ ++R +++ +V
Sbjct: 127 GYRNKAQVPVRTVNGELQTGFYKKHSHDLVPIEDFLIQDPKIDQAIVVVRDLLRKYHVPA 186
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPN-SDKLESLAE 217
YDE G +R + + Y Q+ +V S+ + P+ D +E +
Sbjct: 187 YDERANKGVIRNIMVRRGHYTK-------------QMMIVLVSQTWQVPHLKDIVEEITL 233
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
L + SV N NVI G + R + GE + + G + ++P SF
Sbjct: 234 ALPE----------VTSVVVNLNDKRTNVILGRKSRTIYGEDYLLDKLLGSEFQISPVSF 283
Query: 278 GQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q N ++L +K + +V D Y+G G I L++ AR + V VE+ + +
Sbjct: 284 YQVNPVQTEVLYKKAIEAAGLTGKENVIDAYSGIGTISLTM--ARHAKHVYGVEVVEPAV 341
Query: 336 LSFEKTVSRLPKSVDGNISWH--NADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHA 390
R +D N+++ A+ I+ W + DVL+VDPPRKGLD S + A
Sbjct: 342 RDARANAVR--NHID-NVTFEVGKAEEVIQ--RWKDNELPVDVLMVDPPRKGLDKSFIDA 396
Query: 391 L 391
+
Sbjct: 397 V 397
>gi|195977835|ref|YP_002123079.1| 23S rRNA-methyltransferase [Streptococcus equi subsp. zooepidemicus
MGCS10565]
gi|195974540|gb|ACG62066.1| 23S rRNA-methyltransferase [Streptococcus equi subsp. zooepidemicus
MGCS10565]
Length = 453
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 84/339 (24%), Positives = 146/339 (43%), Gaps = 38/339 (11%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
Y +R +A++ VR + G +++ +H +V I I+ + R ++ +++
Sbjct: 124 YAYRNKAQVPVRRVNGQLETGFFRKHSHELVPISDFYIQDKEIDRLIAFTRDLLRRFDIK 183
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
PYDE +++G +R+ L + +G++ + LV N +AE
Sbjct: 184 PYDEKEQSGLIRH-----------LVVRRGHYSGEIMLVLVTTRPKIFRINQMIDRLVAE 232
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
F I S+ N NVIFG + L G+ + + G ++ SF
Sbjct: 233 FPA-----------ITSILQNINDKPTNVIFGKAFTRLYGKETITDTILGNQYCISAQSF 281
Query: 278 GQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
Q NT + L + + A V D Y+G G IGLS A++ ++V VE+ + +
Sbjct: 282 YQVNTTMAEKLYQTAIDFSELTADDVVIDAYSGIGTIGLSF--AKEVKAVYGVEVIEAAV 339
Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIE--PLSWL---VGSDVLVVDPPRKGLDSSLVHA 390
EK +++G + H +S E +W + V++VDPPRKGL S + A
Sbjct: 340 RDAEKNA-----ALNGITNAHYVADSAENAMANWCQEGIKPTVIIVDPPRKGLTESFIKA 394
Query: 391 LQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQ 429
S K +S + ++M ++ KR L K VQ
Sbjct: 395 --SAAMQPDKITYISCNPATMARDIKRYEELGYKLQKVQ 431
>gi|408401934|ref|YP_006859898.1| hypothetical protein GGS_1263 [Streptococcus dysgalactiae subsp.
equisimilis RE378]
gi|407968163|dbj|BAM61401.1| hypothetical protein GGS_1263 [Streptococcus dysgalactiae subsp.
equisimilis RE378]
Length = 453
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 158/344 (45%), Gaps = 50/344 (14%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A++ VR + G +++ +H++V I I+ + R+ ++ +V+P
Sbjct: 125 AYRNKAQVPVRRVNGQLETGFFRKHSHDLVPISDYYIQDKEIDRLINFTRELLRRFDVKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R++ + Y+ G++ + LV P +++ +
Sbjct: 185 YDEKEQTGLIRHIVVRRGHYS-----------GEMMLVLVTTR-----PKVFRVDQVI-- 226
Query: 219 LWRNGGSRSREHY--IHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
S+ E + + S+ N N IFG ++ L G+ +++ G D +++ S
Sbjct: 227 ------SKIVESFPAVVSIIQNINDKNTNAIFGKDFKTLYGKDTITDSMLGNDFAISAQS 280
Query: 277 FGQANTRAFDILLRKL-QKYVPYG-----ASVTDLYAGAGVIGLSLAAARKCRSVKCVEI 330
F Q NT ++ KL Q + + V D Y+G G IGLS A+ ++V VE+
Sbjct: 281 FYQVNT----VMAEKLYQTAIAFSDLSEDDVVIDAYSGIGTIGLSF--AKTVKAVYGVEV 334
Query: 331 NKESQLSFEKTVSRLPKSVDGNISWHNADNSIE--PLSWL---VGSDVLVVDPPRKGLDS 385
+ + ++ +R +G + H ++ E +W + V++VDPPRKGL
Sbjct: 335 IEAAVKDAQQNAAR-----NGITNVHFVADTAENAMATWAKEDIKPSVILVDPPRKGLTE 389
Query: 386 SLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQ 429
S + A S+ +K +S + ++M ++ KR L K VQ
Sbjct: 390 SFIQA--SVAMGPQKITYVSCNPATMARDIKRYQDLGYKLTKVQ 431
>gi|37522703|ref|NP_926080.1| hypothetical protein gll3134 [Gloeobacter violaceus PCC 7421]
gi|50401751|sp|Q7NGN4.1|Y3134_GLOVI RecName: Full=Uncharacterized RNA methyltransferase gll3134
gi|35213705|dbj|BAC91075.1| gll3134 [Gloeobacter violaceus PCC 7421]
Length = 457
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 145/325 (44%), Gaps = 34/325 (10%)
Query: 96 RLYGWRCRAKLAV-RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKEL 154
R +G+R ++ + R P+IG YQ+ +H +V + C R++ + R+ I+
Sbjct: 132 RPFGYRNKSTFPIGRDARGEPVIGYYQKDSHRIVPLDACPVQDSRLDPLLAAARELIRTQ 191
Query: 155 NVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLES 214
YDE G LR++ + + R G+ +T V N + ++
Sbjct: 192 GWSIYDEKHHRGALRHLGLRIGE-----------RTGQRLLTFVVNGQTLSG-----IKP 235
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
A+ L R + V N T N IFG + R L G+ E + G + P
Sbjct: 236 AAQALM------DRFADLVGVCLNTHTERGNTIFGPQTRCLAGQDFIEEVLDGFRFRIEP 289
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
++F Q T +IL R + + A +V D Y G G LSL AR R+V +E +
Sbjct: 290 TTFFQICTSQAEILARLVARGADATAEQTVVDAYCGIGT--LSLPLARAARAVVGIESHV 347
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQ 392
S E+ +R ++G + ++E L + +D++VVDPPRKG D ++ A+
Sbjct: 348 R---SVEQ--ARQNARINGIENCRFLAGTVEALLPDLRADIVVVDPPRKGCDPEVLEAI- 401
Query: 393 SIGSAERKAKSLSESSSSMVKEEKR 417
+ + + +S + +++ ++ KR
Sbjct: 402 -LHAVPMRVVYVSCNPATLARDLKR 425
>gi|312898459|ref|ZP_07757849.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera
micronuciformis F0359]
gi|310620378|gb|EFQ03948.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera
micronuciformis F0359]
Length = 460
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 84/355 (23%), Positives = 148/355 (41%), Gaps = 42/355 (11%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIVD---EATDFFKSIGLLDF-----TFDSCRLYGWRCRAK 105
C + C GC + + + + + D + IG L T + + +R + +
Sbjct: 79 CSVYAECGGCQLQHLSYEGQLAEKRQQVQDAVERIGKLKDVPVLPTLGADDPWAYRNKMQ 138
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
L V G S IG + E +H ++DI C N + ++RQ +KE + YDED T
Sbjct: 139 LPVGGDKRSLHIGCFAEKSHRIIDIDACPIQKGGNNEIIPVVRQWMKEYKIPAYDEDKGT 198
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGS 225
G +R++ M T ++ G++ + +V P ++ L + L ++
Sbjct: 199 GMIRHI-MGRTGVHS----------GEIMVCIVT-----AVPMVPHMKELVQMLRKDVPG 242
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
+ SV N + NVI GN+ + + G +++G + ++ SF Q N+
Sbjct: 243 ------LTSVIQNINSRHTNVILGNKTKVIYGSPTISDSIGDLSFRISAQSFFQVNSEQA 296
Query: 286 DILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAA-ARKCRSVKCVEINKESQLSFEKTV 342
L Y +V D+Y G G I L LA A+ ++ VE + V
Sbjct: 297 QKLYDTALSYADLKGNETVVDVYCGTGTITLFLAERAKFAYGIEIVE------PAIRDAV 350
Query: 343 SRLPKSVDGNISWHNADNSI---EPLSWLVGSDVLVVDPPRKGLDSSLVHALQSI 394
+ N + D + E L V DV+V+DPPR G + +++A+ S+
Sbjct: 351 KNARDNGVKNAHFMCGDAAYKLPELLRSGVKPDVIVIDPPRAGCEEKVLNAIASV 405
>gi|421878809|ref|ZP_16310286.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Leuconostoc citreum
LBAE C11]
gi|390447295|emb|CCF26406.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Leuconostoc citreum
LBAE C11]
Length = 473
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 75/316 (23%), Positives = 142/316 (44%), Gaps = 39/316 (12%)
Query: 84 SIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAA 143
+IG+ D T +R +A++ V+ + G Y+ G+H ++ + P+++ A
Sbjct: 139 TIGMTDPT-------KYRNKAQVPVQMVNGQLETGFYRRGSHKLMPVEDFYIQDPKVDEA 191
Query: 144 VELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRN 203
V + R +++L + YDE+ G +R++ A + + ++ + ++ N++
Sbjct: 192 VSVTRDVLRDLGISAYDEETHKGVVRHIM-----------ARRGFYSHELMVVIITNTK- 239
Query: 204 EKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWE 263
K P +D + + R++ + S N NVI G + G + +
Sbjct: 240 -KLPEADNIAA---------ALRAKLPELKSFIHNINNHDTNVIMGQWNETVWGADEIHD 289
Query: 264 NVGGIDISLAPSSFGQANTRAFDIL--LRKLQKYVPYGASVTDLYAGAGVIGLSLAAARK 321
+ G D + P+SF Q N + +L L + + V D Y+G G I LS+ A +
Sbjct: 290 QLMGKDFIIGPNSFYQINPQTTAVLYTLAAEKAGLKPTDVVVDAYSGIGTITLSI--ADQ 347
Query: 322 CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDP 378
V VE+ +++ L EK +D N+ + AD + W DV+ VDP
Sbjct: 348 VAKVYGVEVVEDAVLDAEKNAQN--NHID-NVEFVTADAPEQMTQWAADGLKPDVVFVDP 404
Query: 379 PRKGLDSSLVHALQSI 394
PRKGL + L+ A+ ++
Sbjct: 405 PRKGLTNELISAVSAM 420
>gi|417751650|ref|ZP_12399927.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
dysgalactiae subsp. equisimilis SK1249]
gi|333772560|gb|EGL49396.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
dysgalactiae subsp. equisimilis SK1249]
Length = 453
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 158/344 (45%), Gaps = 50/344 (14%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A++ VR + G +++ +H++V I I+ + R+ ++ +V+P
Sbjct: 125 AYRNKAQVPVRRVNGQLETGFFRKHSHDLVPISDYYIQDKEIDRLINFTRELLRRFDVKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R++ + Y+ G++ + LV P +++ +
Sbjct: 185 YDEKEQTGLIRHIVVRRGHYS-----------GEMMLVLVTTR-----PKVFRVDQVI-- 226
Query: 219 LWRNGGSRSREHY--IHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
S+ E + + S+ N N IFG ++ L G+ +++ G D +++ S
Sbjct: 227 ------SKIVESFPAVVSIIQNINDKNTNAIFGKDFKTLYGKDTITDSMLGNDFAISAQS 280
Query: 277 FGQANTRAFDILLRKL-QKYVPYG-----ASVTDLYAGAGVIGLSLAAARKCRSVKCVEI 330
F Q NT ++ KL Q + + V D Y+G G IGLS A+ ++V VE+
Sbjct: 281 FYQVNT----VMAEKLYQTAIAFSDLSEDDVVIDAYSGIGTIGLSF--AKTVKAVYGVEV 334
Query: 331 NKESQLSFEKTVSRLPKSVDGNISWHNADNSIE--PLSWL---VGSDVLVVDPPRKGLDS 385
+ + ++ +R +G + H ++ E +W + V++VDPPRKGL
Sbjct: 335 IEAAVKDAQQNAAR-----NGITNVHFVADTAENAMATWAKEGIKPSVILVDPPRKGLTE 389
Query: 386 SLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQ 429
S + A S+ +K +S + ++M ++ KR L K VQ
Sbjct: 390 SFIQA--SVAMGPQKITYVSCNPATMARDIKRYQDLGYKLTKVQ 431
>gi|2196421|dbj|BAA20428.1| unnamed protein product [Synechocystis sp. PCC 6803]
Length = 463
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 134/290 (46%), Gaps = 38/290 (13%)
Query: 104 AKLAVRGTSTSPL---------IGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKEL 154
A L R +T PL G Y++G+H +V+I C R+N + +++ I+
Sbjct: 133 ASLGYRNKATYPLSRSKTGQVQAGYYRKGSHRLVNINQCPVQDDRLNLLLTEVKKDIENR 192
Query: 155 NVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLES 214
YDE+ + G LR++ + + R G++ +TL+ S ++ P+ + E
Sbjct: 193 GWSIYDEEKKQGKLRHLSLRIGQ-----------RTGEMLLTLI--SAHKGLPDLE--EQ 237
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
E+L R + + N Q NN IFG+ + G E + SL
Sbjct: 238 AGEWL-------ERYPDLGGICLNIQPEPNNRIFGDETVVIAGRGICREKFADLSFSLGA 290
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
++F Q N+ A ++LL +LQ+ + + + D YAG G L L AR+ R +E+N+
Sbjct: 291 NTFFQVNSGAAELLLTRLQQALNLQGAELLVDAYAGVGTFTLPL--ARQVRQAIAIEVNQ 348
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKG 382
+S ++ + + + + + + + LS + DVL++DPPRKG
Sbjct: 349 DSVHQGQRN-AEINQIANVDFLAGTVETVLPTLSEI--PDVLLLDPPRKG 395
>gi|20808229|ref|NP_623400.1| SAM-dependent methyltransferase [Thermoanaerobacter tengcongensis
MB4]
gi|50401766|sp|Q8R918.1|Y1812_THETN RecName: Full=Uncharacterized RNA methyltransferase TTE1812
gi|20516825|gb|AAM25004.1| SAM-dependent methyltransferases related to tRNA
(uracil-5-)-methyltransferase [Thermoanaerobacter
tengcongensis MB4]
Length = 452
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 77/299 (25%), Positives = 131/299 (43%), Gaps = 30/299 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R + + V + G Y +H +V + +C HP N V ++++ + E ++ Y
Sbjct: 127 YRNKGQFVVGEIGREKITGFYSFHSHEIVPVDNCLIQHPLSNKVVSVVKEWLNECDISVY 186
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEF 218
D G +R+V V ++ G+V +V N E P ++L E+L E
Sbjct: 187 DRKKGKGLIRHVVAKVA-----------FKTGEVMAIIVING--EDIPCKEELIEALKE- 232
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ + SV N T +I GN+ + G+ + + + ++P SF
Sbjct: 233 ---------KVPGLKSVILNINTRRTKMILGNKNIVIYGKNTIEDFIKDLRFEISPLSFF 283
Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q N +IL K +Y V D+Y+G G I SL AA+K V +E KE+
Sbjct: 284 QVNPIQTEILYDKAIEYAGLTGKEVVIDVYSGIGTI--SLFAAKKASFVYGIESVKEAVE 341
Query: 337 SFEKTVSRLPKSVDGNISWHNADNSIEPL-SWLVGSDVLVVDPPRKGLDSSLVHALQSI 394
EK +++ + W A+ I L V ++V++VDPPR G D ++ A+ I
Sbjct: 342 DAEKN-AQVNGVKNVKFIWGKAEREIAKLYKEGVKAEVVIVDPPRDGCDKEVIRAIVGI 399
>gi|431595374|ref|ZP_19522134.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1861]
gi|430590608|gb|ELB28664.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1861]
Length = 460
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 78/361 (21%), Positives = 153/361 (42%), Gaps = 56/361 (15%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRC 102
CP + C GC + + + +++ +A + FK G + T + +R
Sbjct: 76 CPVYYECGGCQLQHLAYQAQLDFKKDLLL-QALEKFKPAGFRSYQLLPTIGMDDPWHYRN 134
Query: 103 RAKLAVRGTSTSPLI--GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYD 160
+A+ +R + GLY+ +H +V I C PR + + Q + + + YD
Sbjct: 135 KAQFQLRKNKQTQKAEAGLYEANSHQLVPITDCLVQEPRTQKVMNTVVQLLNKFDAPIYD 194
Query: 161 EDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLW 220
E +G R + + + + G++Q+ V+ +R++K P + +
Sbjct: 195 ERTNSGIFRTIMVRIGV-----------KTGELQV--VFITRSKKFPQKNA-------MI 234
Query: 221 RNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQA 280
R R E + S+ N Q +++ G+ H+ G+ E + + L+ +F Q
Sbjct: 235 REINERLPE--VVSIMQNVQAQKTSLVMGDETIHVWGKEAIEEQINEVTFDLSTRAFFQL 292
Query: 281 NTRAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSF 338
N + ++L + K + ++ D Y G G IGLS+ A+K + V+ ++ ++
Sbjct: 293 NPQQTELLYGEGIKALDAQPDETIVDAYCGVGTIGLSV--AKKVKEVRGMDTVPQAIADA 350
Query: 339 EKTVSRLPKSVDGNISWHNADNSIEPL-----SWL---VGSDVLVVDPPRKGLDSSLVHA 390
++ RL +HN + WL D ++VDPPR GLD++L+ +
Sbjct: 351 KRNAERL--------GYHNTRYEVGTAEQVLPKWLNEGFQPDGIIVDPPRTGLDNALIQS 402
Query: 391 L 391
L
Sbjct: 403 L 403
>gi|419718022|ref|ZP_14245362.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnoanaerobaculum
saburreum F0468]
gi|383305783|gb|EIC97128.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnoanaerobaculum
saburreum F0468]
Length = 392
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 80/350 (22%), Positives = 151/350 (43%), Gaps = 39/350 (11%)
Query: 52 LQCPHFQSCSGCTH---EFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAV 108
L+C + C GC + ++ H ++ A K G D Y +R + AV
Sbjct: 16 LKCAVAKKCGGCDYINSPYDKHVKEKLELANKLIKKYGKFDRIISMSNPYHYRNKVS-AV 74
Query: 109 RGTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGD 167
G +I G Y++ +H VVD +C + + ++ +++ ++ YDED G
Sbjct: 75 FGFENKKIISGTYEKNSHRVVDTKNCLIEDKKASEIIQTIKKMCISFKIKAYDEDSGFGF 134
Query: 168 LRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRS 227
LR+V + V ++G++ + LV + N PN + + R
Sbjct: 135 LRHVLIRVGK-----------KSGQIMVVLV--TSNVIFPNKNAFIKVL---------RG 172
Query: 228 REHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDI 287
I ++ N +++ G+R + G+ + + G+ ++P SF Q N +
Sbjct: 173 EHPEITTIVQNVNNKNTSMVLGDREIVMYGKGYITDELCGLTFKISPKSFYQVNRDQTEK 232
Query: 288 LLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRL 345
L + +Y + D Y+G G IG L A++ + V VE+NK++ + ++
Sbjct: 233 LYAQAIEYAGLEGDEVLLDAYSGIGTIG--LIASKSVKEVISVELNKDAH---KDAITNA 287
Query: 346 PKSVDGNISWHNADNS--IEPLSWLVGS--DVLVVDPPRKGLDSSLVHAL 391
+ N+ ++NAD + I L+ G DV+++DPPR G + A+
Sbjct: 288 KINNIKNVKFYNADATAFINDLAA-AGEKIDVVILDPPRTGSTEEFIAAI 336
>gi|310658947|ref|YP_003936668.1| Uncharacterized RNA methyltransferase BCE_0363 [[Clostridium]
sticklandii]
gi|308825725|emb|CBH21763.1| Uncharacterized RNA methyltransferase BCE_0363 [[Clostridium]
sticklandii]
Length = 475
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 87/379 (22%), Positives = 173/379 (45%), Gaps = 45/379 (11%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFK--SIGLLDFTFDSCRLYGWRCRA 104
CP SC GC + + + + I+V + K + ++D T Y +R +A
Sbjct: 89 CPIAHSCGGCQIMQLNYSKQLEIKKDIVVQNLSRIGKVENPNVMD-TIGMDNPYNYRNKA 147
Query: 105 KLAVR-GTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
+ V P++G +++ +H ++ + C + ++++RQ I++ + YDE
Sbjct: 148 QFPVGIDKKGKPVMGFFKKMSHEIIPLTTCYVQDTVNDVILDIIRQYIEKYKISLYDEKT 207
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNG 223
G+LR+V V + +I ++ ++ K P K+++L E L
Sbjct: 208 HKGNLRHVVTKVGFHTH-------------EIMVILVTKETKLP---KIDALVEML---- 247
Query: 224 GSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTR 283
++ + ++ N + NVI G + L G+ + + + ++P SF Q N
Sbjct: 248 --EAKLLGLRTLVQNINPNRTNVILGRENKILYGDGIIEDTIDDLVFEISPLSFYQVNPI 305
Query: 284 AFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+L K + + V D+Y G G I L L A+K + V +EI KE+ + +K
Sbjct: 306 QTKVLYNKALELADISSEDVVYDIYCGIGTISLFL--AKKAKHVYGIEIVKEAIENAKKN 363
Query: 342 VSRLPKSVDGNISWH--NADNSI-EPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAE 398
R +++ N S++ A+ + E S + +DV+VVDPPRKG + ++ + +
Sbjct: 364 AKR--NNIE-NASFYAGKAEEVVPELYSRGITADVVVVDPPRKGCEEIVLDTIAKMNP-- 418
Query: 399 RKAKSLSESSSSMVKEEKR 417
+K +S + S++ ++ +R
Sbjct: 419 KKIVYISCNPSTLARDVER 437
>gi|170017687|ref|YP_001728606.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leuconostoc citreum
KM20]
gi|414597645|ref|ZP_11447207.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Leuconostoc citreum
LBAE E16]
gi|169804544|gb|ACA83162.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leuconostoc citreum
KM20]
gi|390481627|emb|CCF29268.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Leuconostoc citreum
LBAE E16]
Length = 473
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 75/316 (23%), Positives = 142/316 (44%), Gaps = 39/316 (12%)
Query: 84 SIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAA 143
+IG+ D T +R +A++ V+ + G Y+ G+H ++ + P+++ A
Sbjct: 139 TIGMTDPT-------KYRNKAQVPVQMVNGQLETGFYRRGSHKLMPVEDFYIQDPKVDEA 191
Query: 144 VELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRN 203
V + R +++L + YDE+ G +R++ A + + ++ + ++ N++
Sbjct: 192 VSVTRDVLRDLGISAYDEETHKGVVRHIM-----------ARRGFYSHELMVVIITNTK- 239
Query: 204 EKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWE 263
K P +D + + R++ + S N NVI G + G + +
Sbjct: 240 -KLPEADNIAA---------ALRAKLPELKSFIHNINNHDTNVIMGQWNETVWGADEIHD 289
Query: 264 NVGGIDISLAPSSFGQANTRAFDIL--LRKLQKYVPYGASVTDLYAGAGVIGLSLAAARK 321
+ G D + P+SF Q N + +L L + + V D Y+G G I LS+ A +
Sbjct: 290 QLMGKDFIIGPNSFYQINPQTTAVLYTLAAEKAGLKPTDVVVDAYSGIGTITLSI--ADQ 347
Query: 322 CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDP 378
V VE+ +++ L EK +D N+ + AD + W DV+ VDP
Sbjct: 348 VAKVYGVEVVEDAVLDAEKNAQN--NHID-NVEFVTADAPEQMTQWAADGLKPDVVFVDP 404
Query: 379 PRKGLDSSLVHALQSI 394
PRKGL + L+ A+ ++
Sbjct: 405 PRKGLTNELISAVSAM 420
>gi|407957891|dbj|BAM51131.1| hypothetical protein BEST7613_2200 [Bacillus subtilis BEST7613]
Length = 445
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 134/290 (46%), Gaps = 38/290 (13%)
Query: 104 AKLAVRGTSTSPL---------IGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKEL 154
A L R +T PL G Y++G+H +V+I C R+N + +++ I+
Sbjct: 115 ASLGYRNKATYPLSRSKTGQVQAGYYRKGSHRLVNINQCPVQDDRLNLLLTEVKKDIENR 174
Query: 155 NVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLES 214
YDE+ + G LR++ + + R G++ +TL+ S ++ P+ + E
Sbjct: 175 GWSIYDEEKKQGKLRHLSLRIGQ-----------RTGEMLLTLI--SAHKGLPDLE--EQ 219
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
E+L R + + N Q NN IFG+ + G E + SL
Sbjct: 220 AGEWL-------ERYPDLGGICLNIQPEPNNRIFGDETVVIAGRGICREKFADLSFSLGA 272
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
++F Q N+ A ++LL +LQ+ + + + D YAG G L L AR+ R +E+N+
Sbjct: 273 NTFFQVNSGAAELLLTRLQQALNLQGAELLVDAYAGVGTFTLPL--ARQVRQAIAIEVNQ 330
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKG 382
+S ++ + + + + + + + LS + DVL++DPPRKG
Sbjct: 331 DSVHQGQRN-AEINQIANVDFLAGTVETVLPTLSEI--PDVLLLDPPRKG 377
>gi|113478164|ref|YP_724225.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Trichodesmium
erythraeum IMS101]
gi|110169212|gb|ABG53752.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Trichodesmium
erythraeum IMS101]
Length = 485
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 88/380 (23%), Positives = 161/380 (42%), Gaps = 63/380 (16%)
Query: 54 CPHFQSCSGCT-----HEFNLH-RPIIVDEATDFFKSIGL--LDFTFDSCRLYGWRCRAK 105
C C GC +E+ L + V +A + + L +D T S +G+R +
Sbjct: 76 CIVADKCGGCQWQHVGYEYQLQAKQNQVIQALERIGGLKLPEVDPTLASVSTFGYRNKVT 135
Query: 106 LAVRGTSTSPL-IGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+ ++ + G YQ+G+H ++++ C R N ++ ++Q I + YDE R
Sbjct: 136 YPLSISNEGEVKAGYYQKGSHKLINLNQCPIQDQRFNPLLKEIKQDITRRKWKIYDEHKR 195
Query: 165 TGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLE---SLAEFLWR 221
G LR++ + + + G++ +TLV N E N +KL ++ W
Sbjct: 196 IGILRHLSLKIGE-----------KTGEIILTLVVNGSEE---NPEKLLPGITVQAQKWL 241
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
SR + V N+ + N IFG + + G E G++ L P++F Q N
Sbjct: 242 EDYSR-----LVGVCLNYNSKATNTIFGQQTVCVAGRFYVREKFSGLEFQLTPNTFFQVN 296
Query: 282 TRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKE------ 333
T+ + L+ + + + S + D Y G G LSLA + ++ V+IN
Sbjct: 297 TKTTEKLVEIVIQELALSNSEIIVDAYCGVGTFCLSLA-----KYLQQVDINYNESLNIV 351
Query: 334 ----SQLSFEKTV-------------SRLPKSVDGNISWHNADNSIEPL--SWLVGSDVL 374
S++ K++ ++ ++ + H + +E L V D++
Sbjct: 352 TEDLSEIKLRKSMVIGLEVQGVAIEQAKFNAKINHLTNVHFYEGKVERLLPQLEVKPDIV 411
Query: 375 VVDPPRKGLDSSLVHALQSI 394
++DPPRKG D S++ L I
Sbjct: 412 LLDPPRKGCDRSVLETLLEI 431
>gi|297583072|ref|YP_003698852.1| TrmA family RNA methyltransferase [Bacillus selenitireducens MLS10]
gi|297141529|gb|ADH98286.1| RNA methyltransferase, TrmA family [Bacillus selenitireducens
MLS10]
Length = 441
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 98/372 (26%), Positives = 154/372 (41%), Gaps = 76/372 (20%)
Query: 54 CPHFQSCSGCT-----HEFNLHRPIIVDEATDFFKSIGLLDFTFDSCR-LYG----WRCR 103
CP + C GC+ +E LH + + + IG FT + + G WR R
Sbjct: 61 CPIYNRCGGCSLQHLSYEGQLHEK--QKQVMNVMERIG--GFTHLTVHPVKGMTDPWRYR 116
Query: 104 AKLAV-RGTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDE 161
K V G +I G Y E +H++VD+ C H + V L+++ + + YD+
Sbjct: 117 NKSQVPVGEEQGRIIAGFYAERSHSIVDMEACLIQHEDQDRIVNLVKELANQHGIRGYDD 176
Query: 162 DDRTGDLRYVQMAVTTYNTSLPASERYR-NGKVQITLVWNSRNEKSPNSDKLESLAEFLW 220
G LR+V + R R +G V + LV ++ + P+ ++L
Sbjct: 177 QKHKGVLRHVVI------------RRSRISGDVMVVLV--TKEQALPHKEQLIQAITGEV 222
Query: 221 RNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQA 280
N + S+ N NVIFG++ L GE + + GI+ ++ SF Q
Sbjct: 223 PN---------VTSIMQNINPKRTNVIFGDKTVCLWGEETIKDRIKGIEFVISAKSFYQV 273
Query: 281 NTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSF 338
N ++L + Y S V D Y G G I L L A+K R V VE
Sbjct: 274 NPVQTEVLYEQALNYAALTGSEKVIDAYCGIGTISLFL--AQKARHVYGVE--------- 322
Query: 339 EKTVSRLPKSVDGNISWHNAD-NSIEPLSWLVGS---------------DVLVVDPPRKG 382
S P D NA N I+ +++ VG DV+VVDPPRKG
Sbjct: 323 ----SVAPAIDDAK---RNAKANHIDNVTFAVGEAETLMPWWYSQGLDPDVIVVDPPRKG 375
Query: 383 LDSSLVHALQSI 394
+++++ A+ ++
Sbjct: 376 CETAMLDAMAAM 387
>gi|450000586|ref|ZP_21825244.1| putative RNA methyltransferase [Streptococcus mutans N29]
gi|449185683|gb|EMB87560.1| putative RNA methyltransferase [Streptococcus mutans N29]
Length = 453
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 87/342 (25%), Positives = 153/342 (44%), Gaps = 46/342 (13%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A++ VR + G +++ +H ++ I I+ + R ++ +++P
Sbjct: 125 AYRNKAQVPVRRVNGQLETGFFRKNSHALMPIEDYYIQDKEIDRLINFTRDLLRRFDLKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE D+TG +R +L + G++ + LV +R++ ++E + E
Sbjct: 185 YDEKDQTGLIR-----------NLVVRRGHYTGQIMLVLV-TTRSKIF----RIEQMIEK 228
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ S + S+ N N IFG+ +R L GE + + G ++ SF
Sbjct: 229 IV------SEFPAVKSIIQNINDRNTNAIFGSEFRTLYGEDTIEDTMLGNRYIISAQSFY 282
Query: 279 QANTRAFDILLRKL-QKYVPYG-----ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
Q NT ++ KL Q + + +V D Y+G G IGLS A+K + V VE+ +
Sbjct: 283 QVNT----VMAEKLYQTAIDFSDLAPDDTVIDAYSGIGTIGLSF--AKKVKDVYGVEVIE 336
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LSWL---VGSDVLVVDPPRKGLDSSL 387
+ EK +++ + H +S E SW + DV++VDPPRKGL S
Sbjct: 337 AAVRDAEKNA-----ALNNITNVHYVADSAEKAMASWSKRGIKPDVILVDPPRKGLTESF 391
Query: 388 VHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQ 429
+ A S RK +S + ++M ++ K L K VQ
Sbjct: 392 IKA--STAMQPRKITYISCAPATMARDVKLYEELGYKLVKVQ 431
>gi|171779969|ref|ZP_02920873.1| hypothetical protein STRINF_01756 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171281317|gb|EDT46752.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
infantarius subsp. infantarius ATCC BAA-102]
Length = 454
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 85/363 (23%), Positives = 162/363 (44%), Gaps = 42/363 (11%)
Query: 78 ATDFFKSIGLLDF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHC 133
A + +K+ G+ D T Y +R +A++ VR + G +++ +H+++ I
Sbjct: 100 ADNLYKTAGISDVEVLETLGMEHPYAYRNKAQVPVRRVNGQLETGFFRKHSHDLMPISDF 159
Query: 134 KAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKV 193
+ I+ + R ++ +++PYDE ++TG +R +L + +G++
Sbjct: 160 YIQNKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIR-----------NLVVRRGHYSGEM 208
Query: 194 QITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWR 253
+ V P ++E + E + + + SV N N IFGN +R
Sbjct: 209 MLVFVTTR-----PKIFRIEQIIEKIV------AEFPVVKSVVQNINDKNTNAIFGNDFR 257
Query: 254 HLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGV 311
L G+ +++ G ++ SF Q NT + L + + A +V D Y+G G
Sbjct: 258 TLYGKDTIVDSMLGNQYEISARSFYQVNTEMAEKLYQTAIDFSDLTADDTVIDAYSGIGT 317
Query: 312 IGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE--PLSWL- 368
IGLS A+ ++V VE+ +E+ ++ +++G + H +S E +W
Sbjct: 318 IGLSF--AKNVKAVYGVEVIEEAVKDAKRNA-----ALNGITNAHYVADSAEHAMATWSK 370
Query: 369 --VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEA 426
+ V++VDPPRKGL + + A S+ K +S + ++M ++ K L K
Sbjct: 371 DGIKPSVILVDPPRKGLTENFIKA--SVAMQPEKVTYISCNPATMARDIKLYQELGYKLQ 428
Query: 427 SVQ 429
VQ
Sbjct: 429 KVQ 431
>gi|326204866|ref|ZP_08194719.1| RNA methyltransferase, TrmA family [Clostridium papyrosolvens DSM
2782]
gi|325984915|gb|EGD45758.1| RNA methyltransferase, TrmA family [Clostridium papyrosolvens DSM
2782]
Length = 462
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 84/360 (23%), Positives = 142/360 (39%), Gaps = 58/360 (16%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLL-----DFTFDSCRLYGWRCRAK 105
CP + C GC + + D + IG L + T + +R + +
Sbjct: 79 CPVYDKCGGCAVQHMSYQAQLDFKKDTVLQNIRRIGGLQNIKVNNTIGMENPFKYRNKVQ 138
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
V IG Y+ +HN++D C N +++R K+ + YDE
Sbjct: 139 YPVGSDKGDIRIGFYETRSHNIIDSNLCDIQPDESNNIRDVVRDFCKDEGIAIYDEKTGK 198
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGS 225
G LR+V + + ++ ++ + LV N N+ + + + + L E+
Sbjct: 199 GLLRHVMV-----------RKGFKTEEIMVVLVVNG-NKLAKSDELVNKLLEYFPD---- 242
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
I S+ N T N+I G++ + G+ + +G ++P SF Q N
Sbjct: 243 ------IKSIILNVNTRNTNIILGDKNICIYGQKYITDYIGSFKFEISPLSFFQVNPIQT 296
Query: 286 DILLRKLQKYVPYGA--SVTDLYAGAG------------VIGLSLAAARKCRSVKCVEIN 331
++L K +Y +V DLY G G V+G+ + A C + + EIN
Sbjct: 297 EVLYEKALEYAGLSGNETVFDLYCGIGTISLFLSQKAKHVVGVEVVADAICDAKRNAEIN 356
Query: 332 KESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHAL 391
S + F V K + E + V +DV+VVDPPRKG D L++ L
Sbjct: 357 GVSNVEF--LVGEAEKVIP------------ELYAQGVKADVVVVDPPRKGCDQLLLNTL 402
>gi|163816191|ref|ZP_02207559.1| hypothetical protein COPEUT_02375 [Coprococcus eutactus ATCC 27759]
gi|158448611|gb|EDP25606.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Coprococcus eutactus
ATCC 27759]
Length = 495
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 81/350 (23%), Positives = 156/350 (44%), Gaps = 32/350 (9%)
Query: 53 QCPHFQSCSGCTHEFNLHRPIIVDEAT---DFFKSIGLLDFTFDSCRLYGWRCRAKLAVR 109
+CP C GC + + + ++ D G +D Y +R + A R
Sbjct: 109 KCPISHLCGGCQYVDMPYEQQLAEKQKYIDDLLSVFGPVDKIIGMENPYHYRNKVTAAFR 168
Query: 110 GTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDL 168
+ +I G+Y+EGTHN++ + +C + A + IK ++ Y+ED TG +
Sbjct: 169 RMKSGEIISGVYEEGTHNILPVENCYVEDEKAAAIIRTFAGLIKSFKLQIYNEDTGTGLI 228
Query: 169 RYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSR 228
R++Q+ V + G++ + +V SP ++LA+ L +
Sbjct: 229 RHLQIRVGR-----------KTGQIMVIIVT-----ASPVFPSKKNLAKALV------TA 266
Query: 229 EHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDIL 288
I +V N +++ G+R + + G+ + + G ++P SF Q N ++L
Sbjct: 267 HPEITTVVQNINMKDTSMVIGDRNQVVYGKGYIEDILCGKRFRISPGSFYQVNPEQTEVL 326
Query: 289 LRKLQKY--VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLP 346
K KY + +V D Y G G IG +AA+ + + V VE+N E+ + + ++
Sbjct: 327 YGKAIKYADLKKKETVIDAYCGIGTIG--IAASDRAKKVIGVELN-EAAVHDARVNVKMN 383
Query: 347 KSVDGNISWHNADNSIEPLSWLVGS-DVLVVDPPRKGLDSSLVHALQSIG 395
K + +I ++A + ++ S DV+ +DPPR G + ++ ++G
Sbjct: 384 KIQNVDIYSNDAGRFMVDVADEGDSIDVVFMDPPRSGSTEEFMSSVITLG 433
>gi|220931148|ref|YP_002508056.1| RNA methyltransferase [Halothermothrix orenii H 168]
gi|219992458|gb|ACL69061.1| RNA methyltransferase, TrmA family [Halothermothrix orenii H 168]
Length = 453
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 97/367 (26%), Positives = 154/367 (41%), Gaps = 78/367 (21%)
Query: 53 QCPHFQSCSGC-THEFN-----LHRPIIVDEATDFFKSIGLLDFTFDSCRL--------- 97
+C F C GC + + LH+ IV D + IG F+ R+
Sbjct: 71 ECEVFGLCGGCHLQQMDYSLQLLHKQKIV---KDTLERIG----GFEEVRVNEVIGADHP 123
Query: 98 YGWRCRAKLAVRGTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELN- 155
+ +R +A+ + + +I G YQ+GTH VV C HP IN + R+ I LN
Sbjct: 124 WIYRNKAQFPLGSDNEGRVITGFYQKGTHQVVPHRQCVIQHPLIN---RIARKTISILNN 180
Query: 156 --VEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLE 213
+ YDE TG LR++ + V Q L++ +R++K +L+
Sbjct: 181 YDLTVYDEKTHTGLLRHLVVRVGICTN-------------QALLIFVTRDKK---FKELQ 224
Query: 214 SLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLA 273
+A L + + V N NVI G++ + G + + +G I +++
Sbjct: 225 EIARKLM------TEIPELKGVLQNINPRRTNVIMGDKTLLIKGNDYYIDYIGSIRYAIS 278
Query: 274 PSSFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEIN 331
P SF Q NT + L ++KY +V D Y GAG IG+ LA + R+V +E+
Sbjct: 279 PHSFFQVNTLQTERLYNTVRKYAGLSGQETVVDAYCGAGSIGIYLAG--EARTVYGIEV- 335
Query: 332 KESQLSFEKTVSRLPKSVDGNISWHNADNSI-------EPLSWLVGS-----DVLVVDPP 379
V + + N + + +N I + L LV DV++ DPP
Sbjct: 336 ----------VGSAIEDAERNAALNGINNCIFIKGKVEDKLPELVDKKKIKPDVIIFDPP 385
Query: 380 RKGLDSS 386
RKGLD
Sbjct: 386 RKGLDKE 392
>gi|430749213|ref|YP_007212121.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermobacillus
composti KWC4]
gi|430733178|gb|AGA57123.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermobacillus
composti KWC4]
Length = 568
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 98/365 (26%), Positives = 157/365 (43%), Gaps = 55/365 (15%)
Query: 54 CPHFQSCSGCTHEFNLH------RPIIVDEATDFFKSIGLLDFTFDSCRLYG----WRCR 103
CP + C GC + + + +V EA F + GL + + G WR R
Sbjct: 184 CPVYDRCGGCQLQHMDYAGQLTAKEELVREA--FARYAGLEEAELPLRPIIGMDEPWRYR 241
Query: 104 AKLAVRGT---STSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYD 160
K ++ +GLY+ G+ +VDI C HP ++AA E +R+ + V
Sbjct: 242 NKAQLQAGHKPGGGLALGLYEPGSRRLVDIAGCAVQHPAVSAAAERIRRLAERAGVPVGA 301
Query: 161 EDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFL 219
D G LR V + V P S G++Q+TLV ++ E+ P D+L E++
Sbjct: 302 GPD--GALRTVVLRVA------PES-----GELQLTLVASA--EQFPGRDRLVEAI---- 342
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
R I S+ N ++ ++FG R R L G D +G + L+P +F Q
Sbjct: 343 ------RRELPQITSISVNVNRGSSPLVFGERTRLLWGRPDLETRLGDLRFKLSPRAFFQ 396
Query: 280 AN----TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
N + +D L + + +V D Y G G I L LA R V+ +E +E+
Sbjct: 397 LNPEQTVKLYD--LAREAAALTGRETVVDAYCGTGTIALWLAP--HAREVRGIETIREAV 452
Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQ 392
E+ +RL + A+ + W+ DV++VDPPR G DS+L+ +
Sbjct: 453 DDAERN-ARLNGWTNARFYVGRAEELLP--RWVKQGFRPDVILVDPPRTGCDSALLRTVA 509
Query: 393 SIGSA 397
+ A
Sbjct: 510 DVKPA 514
>gi|348027261|ref|YP_004767066.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera elsdenii
DSM 20460]
gi|341823315|emb|CCC74239.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Megasphaera elsdenii
DSM 20460]
Length = 461
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 87/356 (24%), Positives = 150/356 (42%), Gaps = 47/356 (13%)
Query: 53 QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDF-----TFDSCRLYGWRC 102
QCP + C GC ++E L + D + IG L T + + +R
Sbjct: 78 QCPVYDRCGGCQLQHLSYEGELKEK--RQQVRDALERIGHLQHIDVLPTLGANTPWHYRN 135
Query: 103 RAKLAVRGTSTSPL-IGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDE 161
+ + V + IG + TH V+D+ C NA V ++RQ +K+ + YDE
Sbjct: 136 KMQFPVAAAGKGKVAIGCFAAATHEVIDVTDCAIQKEGNNAIVAVVRQWMKDFKIPAYDE 195
Query: 162 DDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
D RTG +R++ V + G++ + L+ + + P+ ++ L + L R
Sbjct: 196 DARTGIVRHIMGRVGVH-----------TGEIMVCLI--TACDMVPH---MKDLVQRLRR 239
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
+ + SV N NVI G + + + G+ +++G + ++ SF Q N
Sbjct: 240 DIPGLT------SVVQNVNKRHTNVILGPKTKTVYGKGTIHDSIGPLTFHISAQSFFQVN 293
Query: 282 TRAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
+ L + G +V D+Y G G I L L A+K + V +EI +
Sbjct: 294 SEQAQRLYETALDFADLKGGETVADVYCGTGTITLFL--AQKAKQVYGIEIVAP---AIR 348
Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWLVGS----DVLVVDPPRKGLDSSLVHAL 391
V + GN + D +I L L+ + DV+V+DPPR G ++ A+
Sbjct: 349 DAVRNAKDNHVGNAQFILGD-AIYKLPELIKNGIRPDVIVLDPPRAGCGEPVLKAI 403
>gi|295426510|ref|ZP_06819160.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus amylolyticus
DSM 11664]
gi|295063878|gb|EFG54836.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus amylolyticus
DSM 11664]
Length = 450
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 132/311 (42%), Gaps = 61/311 (19%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR + IG ++ +H++V + + P I+ + R +++ V
Sbjct: 123 GYRNKAQVPVREVNGQLEIGFFRRHSHDLVPLTNFFTTDPEIDRVLVATRDILRKYEVPA 182
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE G++RY L NGK+ + LV ++ P K+
Sbjct: 183 YDEIHHKGEVRY-----------LDVRRSKANGKLMVILVCLHKD--FPQLPKV------ 223
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
S+ I SV N+ NVI G +LGE + +G ++ ++P SF
Sbjct: 224 ----AAEISQIPEISSVILNYNPKKTNVILGRNDYVVLGEDHLIDKIGDVEFRISPKSFF 279
Query: 279 QANT----RAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
Q N+ R +D+ ++K + V D Y+G G IGLS+ A+ ++V+ +E
Sbjct: 280 QINSLQTPRLYDLAIKKAD--LKANDVVVDAYSGIGTIGLSV--AKHVKAVRGME----- 330
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVG---------------SDVLVVDPP 379
T+ + + N N IE ++ G +DV+ VDPP
Sbjct: 331 ------TIREAVEDANANAKL----NGIENAQYVTGKAEDVMPRWASEGLKTDVIFVDPP 380
Query: 380 RKGLDSSLVHA 390
RKGL ++A
Sbjct: 381 RKGLTPEFINA 391
>gi|365851865|ref|ZP_09392280.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
parafarraginis F0439]
gi|363715806|gb|EHL99229.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
parafarraginis F0439]
Length = 390
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 132/298 (44%), Gaps = 50/298 (16%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+ +R +A++ VR + G Y++ +H++V I P+I+ AV ++R +++ ++
Sbjct: 127 FQYRNKAQIPVRMINGKLQTGFYRKHSHSLVPIEDFYIQDPKIDEAVVVVRDILRKFGIQ 186
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
PYDE+ G +R + + Y+ + I L+ SR KL S AE
Sbjct: 187 PYDEETHKGVIRNIMVRRGHYSHEM-----------MIVLITRSR--------KLPSQAE 227
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
+ S + S+ N + N I G R L G+ + + G+D ++P+SF
Sbjct: 228 IITEIMDQLSE---VKSIVQNINSKNTNAIMGTRNIVLYGKGTITDQLMGLDFEISPNSF 284
Query: 278 GQAN----TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
Q N + + + + K + + V D Y G G I LSL A+ R V VEI E
Sbjct: 285 YQVNPTQTEKLYQLAIEKAE--LSKDDVVIDAYCGIGTISLSL--AKVVRKVYGVEIVPE 340
Query: 334 SQLSFEKTVSRL----------PKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRK 381
+ + K +R+ K+ D W + ++P DV+VVDPPRK
Sbjct: 341 A-IEDAKRNARINHIKNCKFVTAKAEDQLAKWQQ--DGLDP-------DVIVVDPPRK 388
>gi|117620248|ref|YP_858149.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
gi|117561655|gb|ABK38603.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
Length = 450
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 139/306 (45%), Gaps = 40/306 (13%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAH---HPRINAAVELLRQGIKEL 154
+ +R +A+ AVRG IG Y++ +H+++ C H +NA V R ++E
Sbjct: 122 FAYRNKAQYAVRGCDAGAEIGFYRKHSHDLITADDCAVQDSLHVELNARV---RNWMREH 178
Query: 155 NVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSP-NSDKLE 213
++ YDE + TG +R +L + +++G++ + LV + E+ P ++ L
Sbjct: 179 DIAAYDEVNHTGCVR-----------NLMTRKGFKSGELMVVLV--TLGEELPFEAELLA 225
Query: 214 SLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLA 273
SL+E + ++ N N I G R LLGE + + ++ ++
Sbjct: 226 SLSEL------------PVTTLVQNINEERTNRILGATNRVLLGEGVIRDKIHELEFEIS 273
Query: 274 PSSFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEIN 331
P SF Q N D+L +Y +V D+Y G G I L LA ++ K V I
Sbjct: 274 PLSFFQNNPSQTDVLYSSALEYAELTGNETVFDIYCGIGTISLFLAG----KAAKVVGIE 329
Query: 332 K-ESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL-SWLVGSDVLVVDPPRKGLDSSLVH 389
ES +S + + L A+ + L + V +DV+V+DPPRKG D +++
Sbjct: 330 SVESAISDARRNAALNGIEHTEFHVGKAEQLMPELHAQGVTADVVVMDPPRKGCDKAVLQ 389
Query: 390 ALQSIG 395
L ++
Sbjct: 390 TLVAMA 395
>gi|386317313|ref|YP_006013477.1| tRNA (uracil-5-)-methyltransferase [Streptococcus dysgalactiae
subsp. equisimilis ATCC 12394]
gi|323127600|gb|ADX24897.1| tRNA (uracil-5-)-methyltransferase [Streptococcus dysgalactiae
subsp. equisimilis ATCC 12394]
Length = 543
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 158/344 (45%), Gaps = 50/344 (14%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A++ VR + G +++ +H++V I I+ + R+ ++ +V+P
Sbjct: 125 AYRNKAQVPVRRVNGQLETGFFRKHSHDLVPISDYYIQDKEIDRLINFTRELLRRFDVKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R++ + Y+ G++ + LV P +++ +
Sbjct: 185 YDEKEQTGLIRHIVVRRGHYS-----------GEMMLVLVTTR-----PKVFRVDQVI-- 226
Query: 219 LWRNGGSRSREHY--IHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
S+ E + + S+ N N IFG ++ L G+ +++ G D +++ S
Sbjct: 227 ------SKIVEAFPAVVSIIQNINDKNTNAIFGKDFKTLYGKDTITDSMLGNDFAISAQS 280
Query: 277 FGQANTRAFDILLRKL-QKYVPYG-----ASVTDLYAGAGVIGLSLAAARKCRSVKCVEI 330
F Q NT ++ KL Q + + V D Y+G G IGLS A+ ++V VE+
Sbjct: 281 FYQVNT----VMAEKLYQTAIAFSDLSEDDVVIDAYSGIGTIGLSF--AKTVKAVYGVEV 334
Query: 331 NKESQLSFEKTVSRLPKSVDGNISWHNADNSIE--PLSWL---VGSDVLVVDPPRKGLDS 385
+ + ++ +R +G + H ++ E +W + V++VDPPRKGL
Sbjct: 335 IEAAVKDAQQNAAR-----NGITNVHFVADTAENAMATWAKEGIKPSVILVDPPRKGLTE 389
Query: 386 SLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQ 429
S + A S+ +K +S + ++M ++ KR L K VQ
Sbjct: 390 SFIQA--SVAMGPQKITYVSCNPATMARDIKRYQDLGYKLTKVQ 431
>gi|309804713|ref|ZP_07698778.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
LactinV 09V1-c]
gi|309808903|ref|ZP_07702784.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
LactinV 01V1-a]
gi|325911406|ref|ZP_08173818.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
UPII 143-D]
gi|308166105|gb|EFO68323.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
LactinV 09V1-c]
gi|308167901|gb|EFO70038.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
LactinV 01V1-a]
gi|325476756|gb|EGC79910.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
UPII 143-D]
Length = 449
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/325 (23%), Positives = 154/325 (47%), Gaps = 43/325 (13%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A++ VR + +G +++ +H++V + +I+AAV +R +++ NV
Sbjct: 122 AYRNKAQVPVRMVNGQLEVGFFRKHSHDLVPMTDFLTTDKKIDAAVVAVRDILRKFNVPA 181
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNS--DKLESLA 216
YDE G++RY+++ NG++ I LV ++ K+ ++ ++SL
Sbjct: 182 YDEIKHNGEVRYLEI-----------RRSKANGQLMIVLVCLHKSFKNLDAVVQAIQSLD 230
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
+ V N NVI G + L G + + +G + ++ S
Sbjct: 231 N--------------VACVILNHNPHKTNVILGEKEYILAGNGEIVDKIGDLSFKISSQS 276
Query: 277 FGQANT----RAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
F Q N+ R +++ ++K Q + V D Y+G G IGLS+ A+ + V VEI +
Sbjct: 277 FFQINSLQTPRLYNLAIQKAQ--LTSDDVVIDAYSGIGTIGLSV--AKHVKKVLGVEIVR 332
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVH 389
++ +K + + ++ + + P W + +DV+ VDPPRKGL + +
Sbjct: 333 DAVKDAKK--NAILNGINNAEYFEGKAEELMP-QWANEGLKTDVIFVDPPRKGLTDTFIK 389
Query: 390 ALQSIGSAERKAKSLSESSSSMVKE 414
A ++ ++ +K +S + ++M+++
Sbjct: 390 A--AVATSPKKIVYISCNPATMIRD 412
>gi|312870826|ref|ZP_07730932.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
LEAF 3008A-a]
gi|312873060|ref|ZP_07733119.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
LEAF 2062A-h1]
gi|311091293|gb|EFQ49678.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
LEAF 2062A-h1]
gi|311093702|gb|EFQ52040.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
LEAF 3008A-a]
Length = 450
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 150/325 (46%), Gaps = 43/325 (13%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A++ VR + +G +++ +H++V + +I+AAV +R +++ NV
Sbjct: 122 AYRNKAQVPVRMVNGQLEVGFFRKHSHDLVPMTDFLTTDKKIDAAVVAVRDILRKFNVPA 181
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLV--WNSRNEKSPNSDKLESLA 216
YDE G++RY+++ NG++ I LV S N ++SL
Sbjct: 182 YDEIKHNGEVRYLEI-----------RRSKANGQLMIVLVCLHKSFNNLDTVVQAIQSLD 230
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
+ V N NVI G + L G + + +G + ++ S
Sbjct: 231 N--------------VACVILNHNPHKTNVILGEKEYILAGNGEIVDKIGDLSFKISSQS 276
Query: 277 FGQANT----RAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
F Q N+ R +++ ++K Q + V D Y+G G IGLS+ A+ + V VEI +
Sbjct: 277 FFQINSLQTPRLYNLAIQKAQ--LTADDVVIDAYSGIGTIGLSV--AKHVKKVLGVEIVR 332
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVH 389
++ +K + + V+ + + P W + +DV+ VDPPRKGL + +
Sbjct: 333 DAVKDAKK--NAILNGVNNAEYFEGKAEELMP-QWANEGLKTDVIFVDPPRKGLTDTFIK 389
Query: 390 ALQSIGSAERKAKSLSESSSSMVKE 414
A ++ ++ +K +S + ++M+++
Sbjct: 390 A--AVATSPKKIVYISCNPATMIRD 412
>gi|421877385|ref|ZP_16308932.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Leuconostoc citreum
LBAE C10]
gi|372556812|emb|CCF25052.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Leuconostoc citreum
LBAE C10]
Length = 473
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/316 (23%), Positives = 142/316 (44%), Gaps = 39/316 (12%)
Query: 84 SIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAA 143
+IG+ D T +R +A++ V+ + G Y+ G+H ++ + P+++ A
Sbjct: 139 TIGMTDPT-------KYRNKAQVPVQMVNGQLETGFYRRGSHKLMPVEDFYIQDPKVDEA 191
Query: 144 VELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRN 203
V + R +++L + YDE+ G +R++ A + + ++ + ++ N++
Sbjct: 192 VSVTRDVLRDLGISVYDEETHKGVVRHIM-----------ARRGFYSHELMVVIITNTK- 239
Query: 204 EKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWE 263
K P +D + + R++ + S N NVI G + G + +
Sbjct: 240 -KLPEADNIAA---------ALRAKLPELKSFIHNINNHDTNVIMGQWNETVWGADEIHD 289
Query: 264 NVGGIDISLAPSSFGQANTRAFDIL--LRKLQKYVPYGASVTDLYAGAGVIGLSLAAARK 321
+ G D + P+SF Q N + +L L + + V D Y+G G I LS+ A +
Sbjct: 290 QLMGKDFIIGPNSFYQINPQTTAVLYTLAAEKAGLKPTDVVVDAYSGIGTITLSI--ADQ 347
Query: 322 CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDP 378
V VE+ +++ L EK +D N+ + AD + W DV+ VDP
Sbjct: 348 VAKVYGVEVVEDAVLDAEKNAQN--NHID-NVEFVTADAPEQMTQWAADGLKPDVVFVDP 404
Query: 379 PRKGLDSSLVHALQSI 394
PRKGL + L+ A+ ++
Sbjct: 405 PRKGLTNELISAVSAM 420
>gi|309803859|ref|ZP_07697944.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
LactinV 11V1-d]
gi|308164093|gb|EFO66355.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
LactinV 11V1-d]
Length = 450
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 150/325 (46%), Gaps = 43/325 (13%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A++ VR + +G +++ +H++V + +I+AAV +R +++ NV
Sbjct: 122 AYRNKAQVPVRMVNGQLEVGFFRKHSHDLVPMTDFLTTDKKIDAAVVAVRDILRKFNVPA 181
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLV--WNSRNEKSPNSDKLESLA 216
YDE G++RY+++ NG++ I LV S N ++SL
Sbjct: 182 YDEIKHNGEVRYLEI-----------RRSKANGQLMIVLVCLHKSFNNLDTVVQAIQSLD 230
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
+ V N NVI G + L G + + +G + ++ S
Sbjct: 231 N--------------VACVILNHNPHKTNVILGEKEYILAGNGEIVDKIGDLSFKISSQS 276
Query: 277 FGQANT----RAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
F Q N+ R +++ ++K Q + V D Y+G G IGLS+ A+ + V VEI +
Sbjct: 277 FFQINSLQTPRLYNLAIQKAQ--LTADDVVIDAYSGIGTIGLSV--AKHVKKVLGVEIVR 332
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVH 389
++ +K + + V+ + + P W + +DV+ VDPPRKGL + +
Sbjct: 333 DAVKDAKK--NAILNGVNNAEYFEGKAEELMP-QWANEGLKTDVIFVDPPRKGLTDTFIK 389
Query: 390 ALQSIGSAERKAKSLSESSSSMVKE 414
A ++ ++ +K +S + ++M+++
Sbjct: 390 A--AVATSPKKIVYISCNPATMIRD 412
>gi|124023185|ref|YP_001017492.1| SAM-dependent methyltransferase [Prochlorococcus marinus str. MIT
9303]
gi|123963471|gb|ABM78227.1| SAM-dependent methyltransferase [Prochlorococcus marinus str. MIT
9303]
Length = 465
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 92/354 (25%), Positives = 158/354 (44%), Gaps = 41/354 (11%)
Query: 54 CPHFQSCSGCT-HEFNLHRPIIVDEA--TDFFKSIGLLD-----FTFDSCRLYGWRCRAK 105
C + C GC+ N H ++ ++ + +G LD D R G+R RA
Sbjct: 83 CKIAKECGGCSIQHLNDHGQSLLKQSHLREILLRLGQLDNKIEPIMTDYTRALGYRNRAL 142
Query: 106 LAV-RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
+ + R L+G Y+ G+H ++D+ C I+ + ++ +++ N P D D
Sbjct: 143 IPLYRNREGQLLMGYYRRGSHQIIDLNRCPVLDRGIDQYLAWIKDDLQQQN-WPADSDLS 201
Query: 165 TGD-LRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNG 223
+G+ +R++ + + + +V ITLV +S E S L A +R
Sbjct: 202 SGEGVRHLGIRIGQ-----------KTRQVLITLV-SSTTELS----GLHQQANDWYR-- 243
Query: 224 GSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTR 283
R + + N Q NN++ G L G+ D E+ + + L+ ++F Q NT
Sbjct: 244 ----RWPEVKGITLNIQRQRNNLVLGQETILLAGDLDIEEHFCNLSLLLSTTTFFQVNTI 299
Query: 284 AFDILLRKLQKYVPY---GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
+ ++ KL K++ ++ D Y G G I L +AAA V +E++ E+ K
Sbjct: 300 QAERIVLKLLKWLSTTLPDINIIDAYCGIGTISLPIAAA--GYHVIGLELHAEAIAQANK 357
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSI 394
R + GN S+ D S+ L DVLV+DPPRKGLD ++ + S+
Sbjct: 358 NALR---NNLGNASFLCGDVSLLLAKILQHHDVLVLDPPRKGLDQMVIKTILSV 408
>gi|456013562|gb|EMF47206.1| RNA methyltransferase, TrmA family [Planococcus halocryophilus Or1]
Length = 454
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/359 (23%), Positives = 148/359 (41%), Gaps = 51/359 (14%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIVDEATDFFKSIGL-LDFTFDSCRLYGWRCRAK 105
CP +++C GC + R ++V + K + ++ T + +R +++
Sbjct: 77 CPIYEACGGCQLQHMTYGQQLVEKRDLVVQALERYLKGTKVQVEETIGMEDPWRYRNKSQ 136
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
R + + GL+ EG+H ++DI C HP +++ ++EL + YD
Sbjct: 137 FQTRLKGSKVIAGLFAEGSHQLLDIDECIVQHPDTTVITNAVKRILEELKMPIYDGKTMK 196
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGS 225
G +R + + T NT G++Q+ LV +R++ LE L +
Sbjct: 197 GIIRTI-VVRTGVNT----------GEIQLVLV-TTRSKIPQKELLLERLQKI------- 237
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN---- 281
+ + S+ N +++FG+ L G+ E +G + L+ +F Q N
Sbjct: 238 ---DTNLVSIVQNINKEKTSLVFGDETITLFGKDTIHEELGELAFDLSARAFFQLNPTQT 294
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLA-AARKCRSVKCVEINKESQLSFEK 340
+ +D + R + + +V D Y G G IGL LA +A++ R + + + + K
Sbjct: 295 VKLYDEIKRAAE--LTGKETVVDAYCGVGTIGLWLADSAKEIRGMDVLHESVVDAKANAK 352
Query: 341 TVSRLPKSVDGNIS-----WHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSI 394
K V G W N P DVL VDPPR GL SL+ + +
Sbjct: 353 AQGYTAKYVTGTAEKWLELWSN--EGFVP-------DVLTVDPPRTGLADSLLQTILKV 402
>gi|349611721|ref|ZP_08890951.1| hypothetical protein HMPREF1027_00378 [Lactobacillus sp. 7_1_47FAA]
gi|348608186|gb|EGY58171.1| hypothetical protein HMPREF1027_00378 [Lactobacillus sp. 7_1_47FAA]
Length = 447
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/325 (23%), Positives = 154/325 (47%), Gaps = 43/325 (13%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A++ VR + +G +++ +H++V + +I+AAV +R +++ NV
Sbjct: 122 AYRNKAQVPVRMVNGQLEVGFFRKHSHDLVPMTDFLTTDKKIDAAVVAVRDILRKFNVPA 181
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNS--DKLESLA 216
YDE G++RY+++ NG++ I LV ++ K+ ++ ++SL
Sbjct: 182 YDEIKHNGEVRYLEI-----------RRSKANGQLMIVLVCLHKSFKNLDAVVQAIQSLD 230
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
+ V N NVI G + L G + + +G + ++ S
Sbjct: 231 N--------------VACVILNHNPHKTNVILGEKEYILAGNGEIVDKIGDLSFKISSQS 276
Query: 277 FGQANT----RAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
F Q N+ R +++ ++K Q + V D Y+G G IGLS+ A+ + V VEI +
Sbjct: 277 FFQINSLQTPRLYNLAIQKAQ--LTSDDVVIDAYSGIGTIGLSV--AKHVKKVLGVEIVR 332
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVH 389
++ +K + + ++ + + P W + +DV+ VDPPRKGL + +
Sbjct: 333 DAVKDAKK--NAILNGINNAEYFEGKAEELMP-QWANEGLKTDVIFVDPPRKGLTDTFIK 389
Query: 390 ALQSIGSAERKAKSLSESSSSMVKE 414
A ++ ++ +K +S + ++M+++
Sbjct: 390 A--AVATSPKKIVYISCNPATMIRD 412
>gi|342163687|ref|YP_004768326.1| hypothetical protein SPPN_05150 [Streptococcus pseudopneumoniae
IS7493]
gi|341933569|gb|AEL10466.1| hypothetical protein SPPN_05150 [Streptococcus pseudopneumoniae
IS7493]
Length = 452
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 138/302 (45%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFFIQDSVIDEVVVGLRDLLRRYDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVILVTTR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDFITDQMLGNDYQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IG+S+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKEDDVVIDAYSGIGTIGISV--AKHVKEVYGVEVIPEA-VE 340
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
K ++L + N A+N+++ +WL + +++VDPPRKGL S + A
Sbjct: 341 NSKKNAQLNNISNANYVCDTAENAMK--NWLKEGIQPSLILVDPPRKGLTESFIKASSQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|366086326|ref|ZP_09452811.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus zeae KCTC 3804]
Length = 456
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/304 (24%), Positives = 134/304 (44%), Gaps = 46/304 (15%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G Y++ +H++V I P+I+ A+ ++R +++ V Y
Sbjct: 131 YRNKAQVPVRMVNGELQTGFYKKHSHDLVPIEDFLIQDPKIDHAIVVVRDLLRKYQVPAY 190
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPN-SDKLESLAEF 218
DE G +R + + R + Q+ +V SR + P+ D +E +
Sbjct: 191 DERTNRGVIRNIMV-------------RRGHATHQMMIVLVSRTWQVPHLKDIVEEMTLA 237
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
L + SV N NVI G + + + G+ + + G + ++P SF
Sbjct: 238 LPE----------VASVVVNLNDKRTNVILGRKSKTIYGQDYLLDKLLGSEFQISPVSFY 287
Query: 279 QANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q N ++L + + +V D Y+G G I L++ AR + V VE+ + +
Sbjct: 288 QVNPVQTEVLYTQAIEAAGLTGKETVIDAYSGIGTISLTM--ARHAKHVYGVEVVESAVR 345
Query: 337 SFEKTVSR---------LPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSL 387
+ +R + K+ D W +AD + DVL+VDPPRKGLD S
Sbjct: 346 DAQANAARNHIKNVTFEVGKAEDVIQKWKDADLPV---------DVLMVDPPRKGLDKSF 396
Query: 388 VHAL 391
+ A+
Sbjct: 397 IDAV 400
>gi|428313119|ref|YP_007124096.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Microcoleus sp. PCC
7113]
gi|428254731|gb|AFZ20690.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Microcoleus sp. PCC
7113]
Length = 469
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 132/302 (43%), Gaps = 48/302 (15%)
Query: 106 LAVRGTSTSPL---------IGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNV 156
LA R +T PL G Y +G+H ++++ C R+N + ++Q I++L
Sbjct: 144 LAYRNKATYPLKRSATGQVQAGYYHQGSHQLINLNQCPVQDARLNPLLAEIKQDIEQLGW 203
Query: 157 EPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLV---WNSRNEKSPNSDKLE 213
Y+E+ G LR++ + + R G++ +TLV W +N + L
Sbjct: 204 SVYNEERHQGRLRHLSLRIGR-----------RTGEMLLTLVTTDWRLQNLDAQAQQWL- 251
Query: 214 SLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLA 273
+R + + N + NVIFG+ R + G+ E G+ + L
Sbjct: 252 -------------TRYPKLMGICVNRNPNRTNVIFGHETRCIAGQPYLQEEFAGLQLQLK 298
Query: 274 PSSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEIN 331
P +F Q NT + LL + + + + D Y G G L L A++ R +E++
Sbjct: 299 PETFFQVNTEVAEALLAAIVEQLALKGDEILVDAYCGIGTFTLPL--AQRVRQAMGLEVH 356
Query: 332 KESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWLVGSDVLVVDPPRKGLDSSLVH 389
S E+ ++L ++G + ++E L + DV+++DPPRKG D ++
Sbjct: 357 PA---SVEQ--AQLNAQLNGISNVTFKTGAVETLLPQLEINPDVVLLDPPRKGCDRVVIE 411
Query: 390 AL 391
AL
Sbjct: 412 AL 413
>gi|309809377|ref|ZP_07703239.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
SPIN 2503V10-D]
gi|308170288|gb|EFO72319.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
SPIN 2503V10-D]
Length = 449
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/325 (23%), Positives = 154/325 (47%), Gaps = 43/325 (13%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A++ VR + +G +++ +H++V + +I+AAV +R +++ NV
Sbjct: 122 AYRNKAQVPVRMVNGQLEVGFFRKHSHDLVPMTDFLTTDKKIDAAVVAVRDILRKFNVPA 181
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNS--DKLESLA 216
YDE G++RY+++ NG++ I LV ++ K+ ++ ++SL
Sbjct: 182 YDEIKHNGEVRYLEI-----------RRSKANGQLMIVLVCLHKSFKNLDAVVQAIQSLD 230
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
+ V N NVI G + L G + + +G + ++ S
Sbjct: 231 N--------------VACVILNHNPHKTNVILGEKEYILAGNGEIVDKIGDLSFKISSQS 276
Query: 277 FGQANT----RAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
F Q N+ R +++ ++K Q + V D Y+G G IGLS+ A+ + V VEI +
Sbjct: 277 FFQINSLQTPRLYNLAIQKAQ--LTSDDVVIDAYSGIGTIGLSV--AKHVKKVLGVEIVR 332
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVH 389
++ +K + + ++ + + P W + +DV+ VDPPRKGL + +
Sbjct: 333 DAVKDAKK--NAILNGINNAEYFEGKAEELMP-QWANEGLKTDVIFVDPPRKGLTDTFIK 389
Query: 390 ALQSIGSAERKAKSLSESSSSMVKE 414
A ++ ++ +K +S + ++M+++
Sbjct: 390 A--AVATSPKKIVYISCNPATMIRD 412
>gi|257063252|ref|YP_003142924.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia
heliotrinireducens DSM 20476]
gi|256790905|gb|ACV21575.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia
heliotrinireducens DSM 20476]
Length = 401
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 126/296 (42%), Gaps = 50/296 (16%)
Query: 116 LIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAV 175
L G+Y+ GTH V+D C + + A + +R + + +EPYDED G LR+ Q+ V
Sbjct: 84 LCGMYERGTHWVIDSSECLIENAQAKAIILTIRDLMPKFRIEPYDEDRDEGFLRHAQVRV 143
Query: 176 TTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDK-LESLAEFLWRNGGSRSREHYIHS 234
+ +G+V +TLV +R E+ P + K + +L SR I +
Sbjct: 144 G-----------HNSGEVMVTLV--TRTEQFPTAKKFVRALV----------SRHPEITT 180
Query: 235 VWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQK 294
V N + NVI G++ R L G + + G+ ++ +SF Q N+ ++L +
Sbjct: 181 VVQNVNSRKTNVIMGDKERKLYGPGFILDTLCGLSFRISSTSFYQVNSTQTEVLYSTAIR 240
Query: 295 YVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDG- 351
+ V D Y G G IGL V IN E + V +V
Sbjct: 241 MAKLTGTETVMDAYCGTGTIGL----------VAVRGINGEPGAAKLIGVEERADAVADA 290
Query: 352 -NISWHNADNSIEPLSWLVGS------------DVLVVDPPRKGLDSSLVHALQSI 394
N + HN ++ E ++ G+ DVL +DPPR G + A SI
Sbjct: 291 RNNARHNGIDNAEFVAADAGAYMREQAEQGRSVDVLFMDPPRAGSTPDFLKAACSI 346
>gi|312873424|ref|ZP_07733475.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
LEAF 2052A-d]
gi|311091108|gb|EFQ49501.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
LEAF 2052A-d]
Length = 447
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 150/325 (46%), Gaps = 43/325 (13%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A++ VR + +G +++ +H++V + +I+AAV +R +++ NV
Sbjct: 122 AYRNKAQVPVRMVNGQLEVGFFRKHSHDLVPMTDFLTTDKKIDAAVVAVRDILRKFNVPA 181
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLV--WNSRNEKSPNSDKLESLA 216
YDE G++RY+++ NG++ I LV S N ++SL
Sbjct: 182 YDEIKHNGEVRYLEI-----------RRSKANGQLMIVLVCLHKSFNNLDAVVQAIQSLD 230
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
+ V N NVI G + L G + + +G + ++ S
Sbjct: 231 N--------------VACVILNHNPHKTNVILGEKEYILAGNGEIVDKIGDLSFKISSQS 276
Query: 277 FGQANT----RAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
F Q N+ R +++ ++K Q + V D Y+G G IGLS+ A+ + V VEI +
Sbjct: 277 FFQINSLQTPRLYNLAIQKAQ--LTADDVVIDAYSGIGTIGLSV--AKHVKKVLGVEIVR 332
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVH 389
++ +K + + ++ + + P W + +DV+ VDPPRKGL + +
Sbjct: 333 DAVKDAKK--NAILNGINNAEYFEGKAEELMP-QWANEGLKTDVIFVDPPRKGLTDTFIK 389
Query: 390 ALQSIGSAERKAKSLSESSSSMVKE 414
A ++ ++ +K +S + ++M+++
Sbjct: 390 A--AVATSPKKIVYISCNPATMIRD 412
>gi|238917769|ref|YP_002931286.1| hypothetical protein EUBELI_01850 [Eubacterium eligens ATCC 27750]
gi|238873129|gb|ACR72839.1| Hypothetical protein EUBELI_01850 [Eubacterium eligens ATCC 27750]
Length = 484
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 99/347 (28%), Positives = 150/347 (43%), Gaps = 62/347 (17%)
Query: 77 EATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTST--SPLIGLYQEGTHNVVDIPHCK 134
E +FF +IG+ + + +R +A+ V GT+ S ++G Y TH+++ CK
Sbjct: 111 EGYEFFPAIGMEE-------PFRYRNKAQYPV-GTAKDGSVVMGFYAGRTHSIISCTDCK 162
Query: 135 AHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQ 194
+ +++ ++ V PYDE R G +R+V + T ++T ++
Sbjct: 163 IGAVENQYILAVIKSWMELNGVAPYDEQTRKGLVRHV-LIRTGFHTD----------EIM 211
Query: 195 ITLVWNSRNEKSPNSDKL-ESLAEFLWRNG--GSRSREHYIHSVWANFQTSTNNVIFGNR 251
+ LV N + SDKL ESL L S + I S+ N+ T NVI G +
Sbjct: 212 VCLVING----TKMSDKLKESLVGRLTEVSLDSDISTDKCIKSIMLNYNTENTNVILGRQ 267
Query: 252 WRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVT--DLYAGA 309
L G++ + +G I ++P SF Q N R + L K +Y + T DLY G
Sbjct: 268 CETLWGKSYIEDYIGDIKYQISPLSFFQVNPRQTEKLYGKALEYAGLTGNETVWDLYCGI 327
Query: 310 GVIGLSLAA-ARKCRSVKCV-----------EIN------------KESQLSFEKTVSRL 345
G I L LA ARK V+ V IN +E F + ++RL
Sbjct: 328 GTISLFLAKNARKVYGVEIVPQAIEDAKNNAAINGIDNAEFFVGKAEEVVPHFYEEMARL 387
Query: 346 PKSVDGNISW-HNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHAL 391
+ A SI P DV+VVDPPRKG D SL+ +
Sbjct: 388 ATDTSATEAQREEARKSITP-------DVVVVDPPRKGCDESLLDTI 427
>gi|385262478|ref|ZP_10040582.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
SK643]
gi|385190379|gb|EIF37826.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
SK643]
Length = 452
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/325 (24%), Positives = 145/325 (44%), Gaps = 36/325 (11%)
Query: 81 FFKSIGLLDF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAH 136
+K G+ D TF +R +A++ VR + G +++ +H+++ +
Sbjct: 103 LYKMAGISDIEVAETFGMENPVKYRNKAQVPVRRVNAILETGFFRKNSHDLMPLEDFFIQ 162
Query: 137 HPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQIT 196
P I+ V LR ++ +++PYDE ++ G +R +L + +G++ +
Sbjct: 163 DPVIDEVVVALRDLLRRYDLKPYDEKEQAGLIR-----------NLVVRRGHYSGQIMVI 211
Query: 197 LVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLL 256
LV P ++E + E + + I SV N N IFG WR L
Sbjct: 212 LVTTR-----PKIFRVEQVIEQIIKQFPE------IVSVMQNINDQNTNAIFGKDWRILY 260
Query: 257 GETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGL 314
G+ + + G D ++ +F Q NT + L + + + V D Y+G G IGL
Sbjct: 261 GQDFITDQMLGNDYQISGPAFYQVNTEMAEKLYQTAIDFAALKSDDVVIDAYSGIGTIGL 320
Query: 315 SLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGS 371
S+ A+ + V VE+ E+ + K ++L + + A+N+++ +W +
Sbjct: 321 SV--AKHVKEVYGVEVIPEA-VENSKKNAQLNNISNAHYVCDTAENAMK--NWTKDGIQP 375
Query: 372 DVLVVDPPRKGLDSSLVHALQSIGS 396
+++VDPPRKGL S + A G+
Sbjct: 376 SLILVDPPRKGLTESFIKASAQTGA 400
>gi|443311018|ref|ZP_21040654.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechocystis sp. PCC
7509]
gi|442778966|gb|ELR89223.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechocystis sp. PCC
7509]
Length = 467
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/336 (24%), Positives = 141/336 (41%), Gaps = 68/336 (20%)
Query: 106 LAVRGTSTSPL---------IGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNV 156
L R +T PL G YQ+GTH ++++ C R+N ++ ++Q I
Sbjct: 139 LGYRNKATYPLSRSAEGQVQAGYYQKGTHQLINLNQCPVQDERLNPLLKEIKQDIYNRGW 198
Query: 157 EPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLA 216
Y+E G LR++ + + R G++ +TLV + + E L
Sbjct: 199 SIYNETRHQGRLRHLGLRIGR-----------RTGEMLLTLVVTDWTLQELETQAQEWL- 246
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
R + V N N IFG + R + GE E G++ + P++
Sbjct: 247 ----------DRYPKLVGVSLNLNAKATNTIFGEKTRCIAGEAYLVEQFAGLEFQMLPTT 296
Query: 277 FGQANTRAFDILLR--KLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q NT A + LL KLQ + + D Y G G + L LA+ + + V +E+ +
Sbjct: 297 FFQVNTEAAEALLEVIKLQLNLQGQEVLVDAYCGIGTLSLPLAS--QVKQVIGLEVQAAA 354
Query: 335 --QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS------------DVLVVDPPR 380
Q F +W N+IE ++ +GS DV+++DPPR
Sbjct: 355 VEQARFN--------------AWR---NNIENATFQLGSVEKALPALTIKPDVVLLDPPR 397
Query: 381 KGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEK 416
+G D +++ AL I + +K +S +++ ++ K
Sbjct: 398 QGCDRTVIDAL--IATKPQKIVYVSCKPATLARDLK 431
>gi|415886105|ref|ZP_11547928.1| YefA [Bacillus methanolicus MGA3]
gi|387588758|gb|EIJ81079.1| YefA [Bacillus methanolicus MGA3]
Length = 460
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 81/296 (27%), Positives = 133/296 (44%), Gaps = 30/296 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ V + G ++ +H +VD P IN AV+ +++ EL + Y
Sbjct: 131 YRNKAQVPVGEKDGKLIAGFFKPRSHEIVDTNESLIQIPEINKAVQAVKEICSELGIPAY 190
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
+E+ G LR++ MA RY ++ +V +R P+ +KL + E +
Sbjct: 191 NEEAHKGVLRHI-MA------------RYGKQTGELMVVIITRTADIPHKNKL--VKEII 235
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
R +S H N NVI G + L G ++ +G + +++ SF Q
Sbjct: 236 ARLPKVKSIVH-------NVNPKRTNVILGEKTTVLWGNEVIYDYIGNVKFAISALSFYQ 288
Query: 280 ANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
N +L K +Y +V D Y G G I L LA +K + V VE+ E+ +
Sbjct: 289 VNPDQTKVLYDKALEYAGLTGEETVIDAYCGIGTISLFLA--QKAKKVFGVEVVPEA-IE 345
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHAL 391
K + L + + A+ I P + G +DVLVVDPPRKG D +L+ A+
Sbjct: 346 DAKRNAELNGITNAEFAVGEAEVVI-PKWYKEGNKADVLVVDPPRKGCDEALLKAI 400
>gi|312875412|ref|ZP_07735416.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
LEAF 2053A-b]
gi|311089075|gb|EFQ47515.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
LEAF 2053A-b]
Length = 450
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 150/325 (46%), Gaps = 43/325 (13%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A++ VR + +G +++ +H++V + +I+AAV +R +++ NV
Sbjct: 122 AYRNKAQVPVRMVNGQLEVGFFRKHSHDLVPMTDFLTTDKKIDAAVVAVRDILRKFNVPA 181
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLV--WNSRNEKSPNSDKLESLA 216
YDE G++RY+++ NG++ I LV S N ++SL
Sbjct: 182 YDEIKHNGEVRYLEI-----------RRSKANGQLMIVLVCLHKSFNNLDTVVQAIQSLD 230
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
+ V N NVI G + L G + + +G + ++ S
Sbjct: 231 N--------------VACVILNHNPHKTNVILGEKEYILAGNGEIVDKIGDLSFKISSQS 276
Query: 277 FGQANT----RAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
F Q N+ R +++ ++K Q + V D Y+G G IGLS+ A+ + V VEI +
Sbjct: 277 FFQINSLQTPRLYNLAIQKAQ--LTANDVVIDAYSGIGTIGLSV--AKHVKKVLGVEIVR 332
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVH 389
++ +K + + ++ + + P W + +DV+ VDPPRKGL + +
Sbjct: 333 DAVKDAKK--NAILNGINNAEYFEGKAEELMP-QWANEGLKTDVIFVDPPRKGLTDTFIK 389
Query: 390 ALQSIGSAERKAKSLSESSSSMVKE 414
A ++ ++ +K +S + ++M+++
Sbjct: 390 A--AVATSPKKIVYISCNPATMIRD 412
>gi|325913301|ref|ZP_08175669.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
UPII 60-B]
gi|325477404|gb|EGC80548.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
UPII 60-B]
Length = 448
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 150/325 (46%), Gaps = 43/325 (13%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A++ VR + +G +++ +H++V + +I+AAV +R +++ NV
Sbjct: 122 AYRNKAQVPVRMVNGQLEVGFFRKHSHDLVPMTDFLTTDKKIDAAVVAVRDILRKFNVPA 181
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLV--WNSRNEKSPNSDKLESLA 216
YDE G++RY+++ NG++ I LV S N ++SL
Sbjct: 182 YDEIKHNGEVRYLEI-----------RRSKANGQLMIVLVCLHKSFNNLDAVVQAIQSLD 230
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
+ V N NVI G + L G + + +G + ++ S
Sbjct: 231 N--------------VACVILNHNPHKTNVILGEKEYILAGNGEIVDKIGDLSFKISSQS 276
Query: 277 FGQANT----RAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
F Q N+ R +++ ++K Q + V D Y+G G IGLS+ A+ + V VEI +
Sbjct: 277 FFQINSLQTPRLYNLAIQKAQ--LTANDVVIDAYSGIGTIGLSV--AKHVKKVLGVEIVR 332
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVH 389
++ +K + + ++ + + P W + +DV+ VDPPRKGL + +
Sbjct: 333 DAVKDAKK--NAILNGINNAEYFEGKAEELMP-QWANEGLKTDVIFVDPPRKGLTDTFIK 389
Query: 390 ALQSIGSAERKAKSLSESSSSMVKE 414
A ++ ++ +K +S + ++M+++
Sbjct: 390 A--AVATSPKKIVYISCNPATMIRD 412
>gi|418972491|ref|ZP_13520616.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pseudopneumoniae ATCC BAA-960]
gi|383352008|gb|EID29762.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pseudopneumoniae ATCC BAA-960]
Length = 451
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 139/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFFIQDSVIDEVVVGLRDLLRRYDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVILVTTR-----PKVFRVDQLIEQV 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG WR L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDFITDQMLGNDYQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IG+S+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKEDDVVIDAYSGIGTIGISV--AKHVKEVYGVEVIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K ++L + N A+N+++ +WL + +++VDPPRKGL S + A
Sbjct: 342 SKKN-AQLNNISNANYVCDTAENAMK--NWLKDGIQPSLILVDPPRKGLTESFIKASTQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|449898381|ref|ZP_21790582.1| putative RNA methyltransferase [Streptococcus mutans R221]
gi|449259897|gb|EMC57413.1| putative RNA methyltransferase [Streptococcus mutans R221]
Length = 451
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 86/342 (25%), Positives = 154/342 (45%), Gaps = 46/342 (13%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A++ VR + G +++ +H+++ I I+ + R ++ +++P
Sbjct: 125 AYRNKAQVPVRRVNGQLETGFFRKNSHDLMPIEDYYIQDKEIDRLINFTRDLLRRFDLKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R +L + G++ + LV +R++ ++E + E
Sbjct: 185 YDEKEQTGLIR-----------NLVVRRGHYTGQIMLVLV-TTRSKIF----RIEQMIEK 228
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ S + S+ N N IFG+ +R L GE + + G ++ SF
Sbjct: 229 IV------SEFPAVKSIIQNINDRNTNAIFGSEFRTLYGEDTIEDTMLGNRYIISAQSFY 282
Query: 279 QANTRAFDILLRKL-QKYVPYG-----ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
Q NT ++ KL Q + + +V D Y+G G IGLS A+K + V VE+ +
Sbjct: 283 QVNT----VMAEKLYQTAIDFSDLAPDDTVIDAYSGIGTIGLSF--AKKVKDVYGVEVIE 336
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LSWL---VGSDVLVVDPPRKGLDSSL 387
+ EK +++ + H +S E SW + DV++VDPPRKGL S
Sbjct: 337 AAVRDAEKNA-----ALNNITNVHYVADSAEKAMASWSKRGIKPDVILVDPPRKGLTESF 391
Query: 388 VHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQ 429
+ A S RK +S + ++M ++ K L K VQ
Sbjct: 392 IKA--STAMQPRKITYISCAPATMARDVKLYEELGYKLVKVQ 431
>gi|317056338|ref|YP_004104805.1| TrmA family RNA methyltransferase [Ruminococcus albus 7]
gi|315448607|gb|ADU22171.1| RNA methyltransferase, TrmA family [Ruminococcus albus 7]
Length = 453
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/350 (24%), Positives = 153/350 (43%), Gaps = 46/350 (13%)
Query: 53 QCPHFQSCSGCTH-------EFNLHRPIIVDEATDFFKSIGLLD---FTFDSCRLYG-WR 101
CP + C GC+ E I D F IG L F C+ +R
Sbjct: 73 DCPVSKHCGGCSFRHISYEAECRAKDKFIRDS----FDRIGKLSPEYMEFCGCKDTDLYR 128
Query: 102 CRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDE 161
+A+ V + + G Y + +H VV+ C+ + VE + + + ++ Y+E
Sbjct: 129 NKAQYPVADDNGKAVCGFYAKRSHRVVEYTRCRLQPVIFSEIVEFIMGYVNDRHIPAYNE 188
Query: 162 DDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
TG LR++ + Y+ G++ + LV +K+ DKL L + +
Sbjct: 189 ISLTGLLRHIYLRRGAYS-----------GEIMVCLVVTDL-KKASVFDKLAILLKEKFS 236
Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
+ I +V N NVI G+R + ++G+ + + G +IS++P SF Q N
Sbjct: 237 D---------IRTVVLNENPKNTNVILGSRMKAIVGDGTINDTMCGNNISISPLSFYQVN 287
Query: 282 TRAFDILLRKLQKY--VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
T ++L +K ++ + + +++ DLY G G IGLS+ AR+ + + VE+ Q + +
Sbjct: 288 THQAELLYKKAGEFAQLSHDSTLLDLYCGTGTIGLSM--ARQVKKLIGVEV---IQAAID 342
Query: 340 KTVSRLPKSVDGNISWHNAD-NSIEPLSWLVGS--DVLVVDPPRKGLDSS 386
+ + N + D I + + G DV++ DP RKG D +
Sbjct: 343 NAKANAKANDITNTEFICGDAGKIAQVLYERGERPDVIIADPARKGCDRA 392
>gi|160879797|ref|YP_001558765.1| RNA methyltransferase [Clostridium phytofermentans ISDg]
gi|160428463|gb|ABX42026.1| RNA methyltransferase, TrmA family [Clostridium phytofermentans
ISDg]
Length = 554
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/357 (22%), Positives = 152/357 (42%), Gaps = 48/357 (13%)
Query: 53 QCPHFQSCSGCTH-------EFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAK 105
+CPH + C GC + + + + + +DF K +L Y +R + +
Sbjct: 177 ECPHSKKCGGCHYLDLPYEEQLKIKQKQVSKLLSDFCKVHPILGMEHP----YHYRNKVQ 232
Query: 106 LAV-RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
R + + G+Y+EGTH ++ C + + + +R +K ++ YDED
Sbjct: 233 AVFGRDAKGNIISGVYKEGTHQIIPTTSCLIEDKKADEIIGTIRGMLKSFKIKTYDEDSG 292
Query: 165 TGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGG 224
G LRYV + + +G++ + LV S L S F+
Sbjct: 293 YGLLRYVLV-----------KRGFTSGEIMVVLVI--------ASPILPSKKNFV---AA 330
Query: 225 SRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN--- 281
R I ++ N T+++I G+R L G+ + + G ++ SF Q N
Sbjct: 331 LRKAHPEITTIVLNINNRTDSLILGDRETVLYGKGYIEDTLCGNVFRISSKSFYQVNPVQ 390
Query: 282 -TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
R + + ++ + V D Y G G IG L A++ + V VE+NKE + +
Sbjct: 391 TERLYQLAIKAAG--LTGKERVIDAYCGIGTIG--LVASKNAKEVLGVEVNKE---AIKD 443
Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
++ ++ N ++N+D + L+ +DV+++DPPR G + A++S+
Sbjct: 444 AIANAKRNGITNEHFYNSDATEFMLAMAEKGEKADVVIMDPPRAGSTEQFIDAVESV 500
>gi|291545363|emb|CBL18471.1| 23S rRNA m(5)U-1939 methyltransferase [Ruminococcus sp. SR1/5]
Length = 453
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 137/314 (43%), Gaps = 61/314 (19%)
Query: 98 YGWRCRAKLAVRGTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNV 156
Y +R +A+ V +I G Y TH+++D C + ++ + +++ +V
Sbjct: 125 YHYRNKAQFPVGKNKDGKIITGFYAGRTHSIIDNRECILGVKQNKEVLDRVIGHMEKYHV 184
Query: 157 EPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESL 215
+PYDE G +R++ + + ++ + L+ N +K P L ESL
Sbjct: 185 QPYDEATGKGLVRHIMIRYG-----------FHTDEMMVCLILNG--DKIPAEKALVESL 231
Query: 216 AEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPS 275
E + S+ N NNVI G++ R L G++ +++G I ++P
Sbjct: 232 CEI-----------PEMTSITINVNKKRNNVILGDQLRLLWGQSYIMDSIGDISYQISPL 280
Query: 276 SFGQANTRAFDILLRKLQKYVPYGASVT--DLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
SF Q N + L K +Y + T DLY G G I L L A+K + V+ VEI
Sbjct: 281 SFFQVNPIQTEKLYGKALEYAGLTGNETVWDLYCGIGTISLFL--AQKAKFVRGVEI--- 335
Query: 334 SQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVG----------------SDVLVVD 377
+P+++D N + N IE + + VG +DV+VVD
Sbjct: 336 -----------VPQAID-NARENAKLNGIENVEFFVGKAEEVLPRGYEKNGVYADVIVVD 383
Query: 378 PPRKGLDSSLVHAL 391
PPRKG D L++ +
Sbjct: 384 PPRKGCDEVLLNTI 397
>gi|257875474|ref|ZP_05655127.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
EC20]
gi|257809640|gb|EEV38460.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
EC20]
Length = 458
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 92/380 (24%), Positives = 156/380 (41%), Gaps = 64/380 (16%)
Query: 33 PSSLPLDPPAANLPSLTCALQCPHFQSCSGCTHEFNLH------RPIIVDEATDFFKSIG 86
PSS + PP C + C GC + ++ + ++ +A + FK G
Sbjct: 67 PSSDRIQPP------------CKFYDRCGGCQLQHLVYDKQLDFKKDLLKQALEKFKPKG 114
Query: 87 LLDFTF-DSCRL---YGWRCRAKLAVRGTSTSPLI--GLYQEGTHNVVDIPHCKAHHPRI 140
F D+ + + +R +A+ +R S + I GLY+ +H +V I C
Sbjct: 115 YQQFELRDTLGMDVPWHYRNKAQFQLRYNSQTKRIEAGLYEMESHRLVAIDDCLVQEQDT 174
Query: 141 NAAVELLRQGIKELNVEPYDEDDRTGDLR--YVQMAVTTYNTSLPASERYRNGKVQITLV 198
+ + Q + + + YDE +G LR V++ + T G+VQ+ +
Sbjct: 175 QKVINGIVQLLNKYQIPIYDERKNSGILRTLMVRIGIAT-------------GEVQVVFI 221
Query: 199 WNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGE 258
NS N+ L R R + + S+ N Q +V+ G HL G+
Sbjct: 222 TNSIKLPQKNA---------LIREINQRLPQ--VVSIMQNVQNKKTSVVMGEETIHLSGK 270
Query: 259 TDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSL 316
E + + L+ +F Q N + IL ++ K + +V D Y G G IGLS+
Sbjct: 271 EAIEERLNELTFDLSARAFFQLNPQQTSILYQEGLKALDLSKNETVVDAYCGVGTIGLSV 330
Query: 317 AAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWL---VGS 371
A K V+ ++I ++ + ++ R+ G + H + E L W
Sbjct: 331 APYAK--EVRGMDIIPQAIENAQENARRI-----GAQNTHYETGTTEELLPKWFNEGFKP 383
Query: 372 DVLVVDPPRKGLDSSLVHAL 391
D ++VDPPR GLD L+ AL
Sbjct: 384 DSIIVDPPRTGLDERLLQAL 403
>gi|225868865|ref|YP_002744813.1| RNA methyltransferase [Streptococcus equi subsp. zooepidemicus]
gi|225702141|emb|CAW99828.1| putative RNA methyltransferase [Streptococcus equi subsp.
zooepidemicus]
Length = 543
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/338 (25%), Positives = 152/338 (44%), Gaps = 36/338 (10%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
Y +R +A++ VR + G +++ +H +V I I+ + R ++ +++
Sbjct: 124 YAYRNKAQVPVRRVNGQLETGFFRKHSHELVPISDFYIQDKEIDRLIAFTRDLLRRFDIK 183
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESL-A 216
PYDE +++G +R+ L + +G++ + LV +R + + ++SL A
Sbjct: 184 PYDEKEQSGLIRH-----------LVVRRGHYSGEIMLVLV-TTRPKVFRINQMIDSLVA 231
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
EF I S+ N NVIFG + L G+ + + G ++ S
Sbjct: 232 EFPA-----------ITSILQNINDKPTNVIFGKAFTRLYGKETITDTILGNQYCISAQS 280
Query: 277 FGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q NT + L + + A V D Y+G G IGLS A++ ++V VE+ + +
Sbjct: 281 FYQVNTTMAEKLYQTAIDFSELTADDVVIDAYSGIGTIGLSF--AKEVKAVYGVEVIEAA 338
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
EK + L + +A+N++ +W + V++VDPPRKGL S + A
Sbjct: 339 VRDAEKNAA-LNGITNAYYVADSAENAMA--NWCQEGIKPTVIIVDPPRKGLTESFIKA- 394
Query: 392 QSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQ 429
S K +S + ++M ++ KR L K VQ
Sbjct: 395 -SAAMQPDKITYISCNPATMARDIKRYEELGYKLQKVQ 431
>gi|411012117|ref|ZP_11388446.1| RNA methyltransferase [Aeromonas aquariorum AAK1]
Length = 450
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/305 (25%), Positives = 138/305 (45%), Gaps = 38/305 (12%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAH---HPRINAAVELLRQGIKEL 154
+ +R +A+ AVRG IG Y++ +H+++ C H +NA V R ++E
Sbjct: 122 FAYRNKAQYAVRGCEAGAEIGFYRKHSHDLITADDCAVQDSLHVELNARV---RNWMREY 178
Query: 155 NVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLES 214
++ YDE TG +R +L + +++G++ + LV + E+ P +L +
Sbjct: 179 DIAAYDEVAHTGCVR-----------NLMTRKGFKSGELMVVLV--TLGEELPFEAELLA 225
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
+ L + ++ N + N I G+ R LLG + + ++ ++P
Sbjct: 226 ALQDLP-----------VTTLVQNINEARTNRILGDNNRVLLGSGVIRDKIHELEFEISP 274
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
SF Q N D+L K +Y +V D+Y G G I L LA ++ K V I
Sbjct: 275 LSFFQNNPSQTDVLYSKALEYCELTGNETVFDIYCGIGTISLFLAG----KAAKVVGIES 330
Query: 333 -ESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL-SWLVGSDVLVVDPPRKGLDSSLVHA 390
ES +S + + L A+ + L + V +DV+V+DPPRKG D +++
Sbjct: 331 VESAISDARRNAALNGIEQTEFHVGKAEQLMPALHAEGVSADVVVMDPPRKGCDKAVLQT 390
Query: 391 LQSIG 395
L ++
Sbjct: 391 LVAMA 395
>gi|423721306|ref|ZP_17695488.1| 23S rRNA (uracil-5-)-methyltransferase RumA, trmA family
[Geobacillus thermoglucosidans TNO-09.020]
gi|383365677|gb|EID42970.1| 23S rRNA (uracil-5-)-methyltransferase RumA, trmA family
[Geobacillus thermoglucosidans TNO-09.020]
Length = 457
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/352 (23%), Positives = 149/352 (42%), Gaps = 42/352 (11%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDFTFDSCRL-----YGWRCRAK 105
CP ++ C GC + ++ + + IG L+ + + +R +A+
Sbjct: 78 CPIYKQCGGCQLQHLSYDGQLRAKQKQVKEVMARIGKLENVIVHPVIGMKNPWRYRNKAQ 137
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
+ V + G YQE +H ++D+ C +A V +++ ++ + Y+E
Sbjct: 138 VPVGEREGRLVAGFYQERSHEIIDMDACLIQQEMNDAVVRTVKKICEKYRIPVYNEATHK 197
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRNGG 224
G LR++ MA RY ++ +V +R + P+ K+ + + E +
Sbjct: 198 GVLRHI-MA------------RYGAATQEVMVVLITRTAELPHKKKIVQEIIESVPN--- 241
Query: 225 SRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRA 284
+ S+ N NVI G+ + L G ++ +G I +++ SF Q N
Sbjct: 242 -------VKSIIQNINPKKTNVIMGDETKVLWGAEYIYDYIGDIQFAISARSFYQVNPAQ 294
Query: 285 FDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTV 342
+L K +Y +V D Y G G I L L A+K + V VE+ E+ + K
Sbjct: 295 TKVLYEKALEYAQLTGEETVIDAYCGIGTISLFL--AKKAKKVFGVEVVPEA-IEDAKRN 351
Query: 343 SRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + + + A+ I W + +D +VVDPPRKG D +L+ +
Sbjct: 352 AALNRITNVEFAVGEAEAVIP--KWYKQGIRADCIVVDPPRKGCDETLLQTI 401
>gi|418324710|ref|ZP_12935940.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
pettenkoferi VCU012]
gi|365224983|gb|EHM66238.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
pettenkoferi VCU012]
Length = 454
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/363 (23%), Positives = 150/363 (41%), Gaps = 57/363 (15%)
Query: 54 CPHFQSCSGCT---HEFNLHRPIIVDEATDFFKSIGLLDFTFDSCR-LYG------WRCR 103
C ++ C GC ++ + ++ + F G DF R + G +R +
Sbjct: 74 CVYYHKCGGCQLQHMDYPAQLAMKKEQVVNLFHRKG--DFADTLIRDVIGMEDPWYYRNK 131
Query: 104 AKLAV-RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
++L V R +G +++ +H+++D+ C HP N + L+Q EL V Y+E
Sbjct: 132 SQLPVGRNKDGHVKMGFFRQRSHDIIDMEECLIQHPSQNEIMVALKQWFDELGVSVYNER 191
Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
+ G +R+V + Y L + V N + K ++ +++F
Sbjct: 192 SKRGLMRHVVIRSGYYTDQL-----------MVIFVTNGKKFKQRDTLVQRLVSQFPQ-- 238
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
I S+ N TS +NVI G + L G + + ++ ++ SF Q N
Sbjct: 239 ---------ITSIKQNINTSHSNVIMGKKSILLFGAEQIDDRLSDVEFKISDQSFYQINA 289
Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEI----NKESQL 336
+ L +K Y V D Y G G IGL +A K + V VE+ ++++L
Sbjct: 290 SQTEKLYQKALDYADLQGEEVVLDTYCGIGTIGLYMAP--KAKHVYGVEVIPDAIEDARL 347
Query: 337 S-----FEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHAL 391
+ F T K+ + + W + I P DV++VDPPRKG D + L
Sbjct: 348 NATRNGFNNTTFVPGKAEEVILKW--KEQGIRP-------DVVMVDPPRKGCDERFIQTL 398
Query: 392 QSI 394
+ +
Sbjct: 399 REL 401
>gi|428320104|ref|YP_007117986.1| 23S rRNA m(5)U-1939 methyltransferase [Oscillatoria nigro-viridis
PCC 7112]
gi|428243784|gb|AFZ09570.1| 23S rRNA m(5)U-1939 methyltransferase [Oscillatoria nigro-viridis
PCC 7112]
Length = 470
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 139/307 (45%), Gaps = 40/307 (13%)
Query: 96 RLYGWRCRAKLAVRGTSTSPL-IGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKEL 154
+ G+R +A V ++T + G YQ+ TH +V++ C PR+N ++ +++ I
Sbjct: 143 QFLGYRNKATYPVAISATGQVQAGYYQKSTHKLVNLNQCPVQDPRLNPLLKEVKEDIHWR 202
Query: 155 NVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLES 214
+ + YDE TG+LR++ + + R G++ +TL+ + + E
Sbjct: 203 DWQVYDEKKHTGELRHLSLRIGR-----------RTGEMLLTLIVRTGDLPGIEEQASEW 251
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
L ++ G V N + NVIFG R + G + E+ G++ L
Sbjct: 252 LKQYPQLAG-----------VCLNINPAQTNVIFGTETRCVAGRSYLRESFAGMNFQLRA 300
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCR---SVKCVE 329
+F Q NT A + LL + + + + D + G G L LA K V+
Sbjct: 301 DTFFQVNTEAAEALLEVMVGELNLQGNEVLVDAFCGIGTFTLPLAKQVKIAIGLEVQAAA 360
Query: 330 INKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWLVGSDVLVVDPPRKGLDSSL 387
I +++QL+ E R N+ + ++E L S + D++++DPPRKG D ++
Sbjct: 361 I-EQAQLNAELNDVR-------NVEFQVG--TVESLLPSLGLTPDIVLLDPPRKGCDRAV 410
Query: 388 VHALQSI 394
+ A++ I
Sbjct: 411 LEAIEEI 417
>gi|78212870|ref|YP_381649.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp.
CC9605]
gi|78197329|gb|ABB35094.1| RNA methyltransferase, TrmA family [Synechococcus sp. CC9605]
Length = 465
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 94/357 (26%), Positives = 155/357 (43%), Gaps = 52/357 (14%)
Query: 54 CPHFQSCSGCTHEFNLHRPIIVDEATDFFKS---------IGLLDFT-----FDSCRLYG 99
C C GCT L R + D A +K+ IG +D D+ R +G
Sbjct: 82 CILADDCGGCT----LQR--LDDSAQTRWKAQQLQQTMQRIGGIDVAPAATIVDAERCFG 135
Query: 100 WRCRAKLAVRGTSTSPL-IGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R RA + ++ L G ++ TH +V++ HC PR++ VE L+Q + P
Sbjct: 136 YRNRALIPLKRDQNGRLKAGYFRPKTHKIVNLNHCPVLDPRLDTFVEPLKQDLDS-GGWP 194
Query: 159 YDEDDRTGD-LRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
D D LR++ + + + G V ITL+ + + LE LA+
Sbjct: 195 ADHDLLEAQGLRHLGLRLASAT-----------GDVLITLISSHAQLRG-----LEDLAQ 238
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
W R + V N Q NN++ G + L G E GI ++L+ ++F
Sbjct: 239 S-WVE-----RWPEVKGVCLNLQPEANNLVLGRKTHCLAGVPTIEEQFCGIKLALSSTTF 292
Query: 278 GQANTRAFDILLRKLQKYVP---YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
Q NT + +++ L ++ GA V D Y G G I L LA A V+ +E+N +S
Sbjct: 293 VQVNTPQAERIVQLLTDWLLNQCAGALVVDAYCGVGTIALPLAKAGF--DVQGLELNPDS 350
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHAL 391
+ ++ + + ++H D + + L LV+DPPR+GLD +V ++
Sbjct: 351 --VEQARLNAMHNGLSSRCAFHAGDVADLLAAHLDDCQALVLDPPRRGLDRRVVDSI 405
>gi|307709324|ref|ZP_07645782.1| RNA methyltransferase [Streptococcus mitis SK564]
gi|307619907|gb|EFN99025.1| RNA methyltransferase [Streptococcus mitis SK564]
Length = 456
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/302 (24%), Positives = 139/302 (46%), Gaps = 32/302 (10%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ VR + G +++ +H+++ + P I+ V LR ++ +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHDLMPLEDFFIQDPVIDEVVVGLRDLLRRYDLKPY 185
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
DE +++G +R +L + +G++ + LV P +++ L E L
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVILVTTR-----PKVFRVDQLIEQL 229
Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
+ I SV N N IFG W L G+ + + G D +A +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWSTLYGQDFITDQMLGNDYQIAGPAFYQ 283
Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
NT + L + + V D Y+G G IGLS+ A+ + V VE+ E+ +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKEDDVVIDAYSGIGTIGLSV--AKHVKEVYGVEVIPEAVEN 341
Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
+K ++L + + A+N+++ +WL + +++VDPPRKGL S + A
Sbjct: 342 SKKN-AQLNHISNAHYVCDTAENAMK--NWLKEGIQPSLILVDPPRKGLIESFIKASTQT 398
Query: 395 GS 396
G+
Sbjct: 399 GA 400
>gi|428202280|ref|YP_007080869.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pleurocapsa sp. PCC
7327]
gi|427979712|gb|AFY77312.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pleurocapsa sp. PCC
7327]
Length = 455
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/343 (25%), Positives = 145/343 (42%), Gaps = 82/343 (23%)
Query: 72 PIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPL-IGLYQEGTHNVVDI 130
PI+VDEA+ G+R +A + ++T + G Y+ +H +V++
Sbjct: 116 PILVDEAS------------------LGYRNKATYPLGISATGKVQTGYYRRNSHQIVNL 157
Query: 131 PHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRN 190
C PR+N + ++Q I++ YDE G LR++ + + R
Sbjct: 158 NQCPVQDPRLNPLLAEIKQDIQQRGWSIYDEKRDRGQLRHLSLRIGR-----------RT 206
Query: 191 GKVQITLV---WNSR--NEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNN 245
G++ +TLV W+ + E++P +W R + V N N
Sbjct: 207 GEILLTLVSTNWDLKGIQEQAP-----------IW-----LKRYPQLVGVTLNRNPERTN 250
Query: 246 VIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILL-RKLQKYVPYGASV-T 303
IFG+ R + G+ E G+++ L P +F Q NT + LL R ++K G V
Sbjct: 251 AIFGSETRTIAGKPYISEIFAGLELQLRPETFFQVNTEVAEALLNRIIEKLDLQGNEVLI 310
Query: 304 DLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE 363
D Y G G L L AR+ + +E+ P SV+ + N+I
Sbjct: 311 DAYCGIGTFTLPL--ARRVKQAIGIEVQ--------------PVSVE-QAQLNARLNNIA 353
Query: 364 PLSWLVGS------------DVLVVDPPRKGLDSSLVHALQSI 394
+S++ G+ D+++VDPPRKG D +++ AL I
Sbjct: 354 NVSFMAGAVETVLPQLEAKPDIVLVDPPRKGCDRAVIDALLQI 396
>gi|125625220|ref|YP_001033703.1| RNA methyltransferase [Lactococcus lactis subsp. cremoris MG1363]
gi|389855608|ref|YP_006357852.1| putative RNA methyltransferase [Lactococcus lactis subsp. cremoris
NZ9000]
gi|124494028|emb|CAL99028.1| putative RNA methyltransferase [Lactococcus lactis subsp. cremoris
MG1363]
gi|300072030|gb|ADJ61430.1| putative RNA methyltransferase [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 513
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/313 (26%), Positives = 136/313 (43%), Gaps = 40/313 (12%)
Query: 99 GWRCRAKLAVRGTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
G+R + + VR + +I GLYQEGTH++V++ +C P+I + + + I++ ++
Sbjct: 129 GYRNKLQFQVRRLNDGTVIAGLYQEGTHHLVNLDNCLVQDPKIQEIINHICRLIEKFDLP 188
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITL-----------VWNSRNEKS 206
YDE + G +R V + + + G+VQI VW E++
Sbjct: 189 VYDE-RKIGGIRTVMVRRSQ-----------KTGEVQIIFVTSTPIILDGQVWPELREEA 236
Query: 207 PNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETD-FWENV 265
K S +F I +V NF + I+G R + L E + E V
Sbjct: 237 SKRQK-NSFVKFDKMLSALTEEFEEIVTVAVNFHPKKTSEIYGERTQVLFNEKETITEGV 295
Query: 266 GGIDISLAPSSFGQANTRAFDILLRKLQKYV--PYGASVTDLYAGAGVIGLSLAAARKCR 323
+ L+P +F Q N+ ++L + K + V D Y G G IG A A+K +
Sbjct: 296 LDYEFELSPRAFYQLNSEQANVLYGEAVKALNPKKDDRVIDAYCGVGTIG--FAVAKKVK 353
Query: 324 SVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWLVG---SDVLVVDP 378
SV ++I ES + RL G + H E + +W + ++VDP
Sbjct: 354 SVHGMDITPESIFDARENAKRL-----GLKNCHYEIGKAERIIPNWNKSGHRATAMIVDP 408
Query: 379 PRKGLDSSLVHAL 391
PR GLD +L+ +
Sbjct: 409 PRTGLDDALLETI 421
>gi|225870131|ref|YP_002746078.1| RNA methyltransferase [Streptococcus equi subsp. equi 4047]
gi|225699535|emb|CAW93112.1| putative RNA methyltransferase [Streptococcus equi subsp. equi
4047]
Length = 543
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/338 (25%), Positives = 152/338 (44%), Gaps = 36/338 (10%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
Y +R +A++ VR + G +++ +H +V I I+ + R ++ +++
Sbjct: 124 YAYRNKAQVPVRRVNGQLETGFFRKHSHELVPISDFYIQDKEIDRLIAFTRDLLRRFDIK 183
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESL-A 216
PYDE +++G +R+ L + +G++ + LV +R + + ++SL A
Sbjct: 184 PYDEKEQSGLIRH-----------LVVRRGHYSGEIMLVLV-TTRPKIFRINQMIDSLVA 231
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
EF I S+ N NVIFG + L G+ + + G ++ S
Sbjct: 232 EFPA-----------ITSILQNINDKPTNVIFGKAFTRLYGKETITDTILGNQYCISAQS 280
Query: 277 FGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q NT + L + + A V D Y+G G IGLS A++ ++V VE+ + +
Sbjct: 281 FYQVNTTMAEKLYQTAIDFSELTADDVVIDAYSGIGTIGLSF--AKEVKAVYGVEVIEAA 338
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
EK + L + +A+N++ +W + V++VDPPRKGL S + A
Sbjct: 339 VRDAEKNAA-LNGITNAYYVADSAENAMA--NWCQEGIKPTVIIVDPPRKGLTESFIKA- 394
Query: 392 QSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQ 429
S K +S + ++M ++ KR L K VQ
Sbjct: 395 -SAAMQPDKITYISCNPATMARDIKRYEELGYKLQKVQ 431
>gi|104773610|ref|YP_618590.1| methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
11842]
gi|103422691|emb|CAI97304.1| Methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
11842]
Length = 451
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 148/328 (45%), Gaps = 49/328 (14%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR IG ++ +H++V + + P I+ + +R ++E +
Sbjct: 123 GYRNKAQVPVRMVKGQLEIGFFRRHSHDLVPLEDFFTNDPEIDRVLLAVRDILREKRIPA 182
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE+ G +RY+++ T G + + LV R+ P L ++ +
Sbjct: 183 YDEEKHQGQVRYLEVRRGT-----------ATGDMMVVLVCLDRD--FPG---LHAVVDE 226
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ G + S++ N NVI G HL G+ + +G + ++P SF
Sbjct: 227 IKEIAG-------VKSIFLNHNPKRTNVILGEHDYHLWGKRYIDDKIGDLTFEISPQSFF 279
Query: 279 QANT----RAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
Q N+ R + + + Q + + D Y+G G IGLS AA+ + V+ VE+ K +
Sbjct: 280 QINSLQTPRLYKLAID--QAGLTKDDLIVDAYSGIGTIGLS--AAKYVKEVRGVEVVK-A 334
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLV--------GSDVLVVDPPRKGLDSS 386
+ K +RL + HNA + L+ +DV+ VDPPRKGL
Sbjct: 335 AVKDAKNNARLNQ-------IHNAKYYVGKAEELMPKWAAEGLKTDVIFVDPPRKGLTKE 387
Query: 387 LVHALQSIGSAERKAKSLSESSSSMVKE 414
+ A ++ + +K +S + +++V++
Sbjct: 388 FIDA--AVKTGPKKVVYISCNPATLVRD 413
>gi|259501117|ref|ZP_05744019.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
DSM 13335]
gi|302190435|ref|ZP_07266689.1| RNA methyltransferase [Lactobacillus iners AB-1]
gi|309806175|ref|ZP_07700192.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
LactinV 03V1-b]
gi|259167811|gb|EEW52306.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
DSM 13335]
gi|308167456|gb|EFO69618.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
LactinV 03V1-b]
Length = 450
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/323 (23%), Positives = 158/323 (48%), Gaps = 39/323 (12%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A++ VR + +G +++ +H++V + +I+AAV +R +++ NV
Sbjct: 122 AYRNKAQVPVRMVNGQLEVGFFRKHSHDLVPMTDFLTTDKKIDAAVVAVRDILRKFNVPA 181
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE G++RY+++ NG++ I LV KS N+ L+++ +
Sbjct: 182 YDEIKHNGEVRYLEI-----------RRSKANGQLMIVLVC---LHKSFNN--LDAVVQA 225
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ +S ++ + V N NVI G + L G + + +G + ++ SF
Sbjct: 226 I------KSLDN-VACVILNHNPHKTNVILGEKEYILAGNGEIVDKIGDLSFKISSQSFF 278
Query: 279 QANT----RAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
Q N+ R +++ ++K Q + V D Y+G G IGLS+ A+ + V VEI +++
Sbjct: 279 QINSLQTPRLYNLAIQKAQ--LTADDVVIDAYSGIGTIGLSV--AKHVKKVLGVEIVRDA 334
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+K + + ++ + + P W + +DV+ VDPPRKGL + + A
Sbjct: 335 VKDAKK--NAILNGINNAEYFEGKAEELMP-QWANEGLKTDVIFVDPPRKGLTDTFIKA- 390
Query: 392 QSIGSAERKAKSLSESSSSMVKE 414
++ ++ +K +S + ++M+++
Sbjct: 391 -AVATSPKKIVYISCNPATMIRD 412
>gi|116513601|ref|YP_812507.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
delbrueckii subsp. bulgaricus ATCC BAA-365]
gi|385815209|ref|YP_005851600.1| RNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus
2038]
gi|418030034|ref|ZP_12668551.1| Methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1632]
gi|418035311|ref|ZP_12673768.1| Methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1519]
gi|116092916|gb|ABJ58069.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
delbrueckii subsp. bulgaricus ATCC BAA-365]
gi|325125246|gb|ADY84576.1| RNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus
2038]
gi|354688497|gb|EHE88536.1| Methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1632]
gi|354690300|gb|EHE90248.1| Methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1519]
Length = 451
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 148/328 (45%), Gaps = 49/328 (14%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
G+R +A++ VR IG ++ +H++V + + P I+ + +R ++E +
Sbjct: 123 GYRNKAQVPVRMVKGQLEIGFFRRHSHDLVPLEDFFTNDPEIDRVLLAVRDILREKRIPA 182
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE+ G +RY+++ T G + + LV R+ P L ++ +
Sbjct: 183 YDEEKHQGQVRYLEVRRGT-----------ATGDMMVVLVCLDRD--FPG---LHAVVDE 226
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ G + S++ N NVI G HL G+ + +G + ++P SF
Sbjct: 227 IKEIAG-------VKSIFLNHNPKRTNVILGEHDYHLWGKRYIDDKIGDLTFEISPQSFF 279
Query: 279 QANT----RAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
Q N+ R + + + Q + + D Y+G G IGLS AA+ + V+ VE+ K +
Sbjct: 280 QINSLQTPRLYKLAID--QAGLTKDDLIVDAYSGIGTIGLS--AAKYVKEVRGVEVVK-A 334
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLV--------GSDVLVVDPPRKGLDSS 386
+ K +RL + HNA + L+ +DV+ VDPPRKGL
Sbjct: 335 AVKDAKNNARLNQ-------IHNAKYYVGKAEELMPKWAAEGLKTDVIFVDPPRKGLTKE 387
Query: 387 LVHALQSIGSAERKAKSLSESSSSMVKE 414
+ A ++ + +K +S + +++V++
Sbjct: 388 FIDA--AVKTGPKKVVYISCNPATLVRD 413
>gi|450126922|ref|ZP_21868416.1| putative RNA methyltransferase [Streptococcus mutans U2A]
gi|449231166|gb|EMC30378.1| putative RNA methyltransferase [Streptococcus mutans U2A]
Length = 454
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/342 (25%), Positives = 154/342 (45%), Gaps = 46/342 (13%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A++ VR + G +++ +H+++ I I+ + R ++ +++P
Sbjct: 125 AYRNKAQVPVRRVNGQLETGFFRKNSHDLMPIEDYYIQDKDIDRLINFTRDLLRRFDLKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R +L + G++ + LV +R++ ++E + E
Sbjct: 185 YDEKEQTGLIR-----------NLVVRRGHYTGQIMLVLV-TTRSKIF----RIEQMIEK 228
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ S + S+ N N IFG+ +R L GE + + G ++ SF
Sbjct: 229 IV------SEFPAVKSIIQNINDRNTNAIFGSEFRTLYGEDTIEDTMLGNRYIISAQSFY 282
Query: 279 QANTRAFDILLRKL-QKYVPYG-----ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
Q NT ++ KL Q + + +V D Y+G G IGLS A+K + V VE+ +
Sbjct: 283 QVNT----VMAEKLYQTAIDFSDLTPDDTVIDAYSGIGTIGLSF--AKKVKDVYGVEVIE 336
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LSWL---VGSDVLVVDPPRKGLDSSL 387
+ EK +++ + H +S E SW + DV++VDPPRKGL S
Sbjct: 337 AAVRDAEKNA-----ALNNITNVHYVADSAEKAMASWSKRGIKPDVILVDPPRKGLTESF 391
Query: 388 VHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQ 429
+ A S RK +S + ++M ++ K L K VQ
Sbjct: 392 IEA--STAMQPRKITYISCAPATMARDVKLYEELGYKLVKVQ 431
>gi|223986649|ref|ZP_03636641.1| hypothetical protein HOLDEFILI_03963 [Holdemania filiformis DSM
12042]
gi|223961380|gb|EEF65900.1| hypothetical protein HOLDEFILI_03963 [Holdemania filiformis DSM
12042]
Length = 453
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 92/355 (25%), Positives = 140/355 (39%), Gaps = 54/355 (15%)
Query: 53 QCPHFQSCSGCT---------HEFNLHRPIIVDEATDFFKSIGLLDFTFDSC--RLYGWR 101
+CP + C GC EF HR D F+ IG LD + W
Sbjct: 80 RCPVARQCGGCQLQIMEAELQAEFKRHR------VADCFQRIGHLDVEVQPVLSMEFPWN 133
Query: 102 CRAKLAV---RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
R K+ V + G Y+ +H++VD C H N + LR I+E +P
Sbjct: 134 YRNKVQVPVGVNRDGKVISGYYRSHSHDIVDFDECCLHSELENQILRSLRSWIEEAG-DP 192
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
LR+ L ++ G+V + L+ S N K + E
Sbjct: 193 -------AQLRH-----------LLIKHAFKTGQVMVVLIAKSENLKGKD--------EL 226
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ R + + I S+ N +NVI G+R L G E + G+ ++ SF
Sbjct: 227 IERLTAAYPQ---IRSIILNVNGREDNVILGDREIVLWGSASIEEELLGLRFQISAKSFY 283
Query: 279 QANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
Q N ++L K + +V D+Y G G IGLS AARK + V +EI +
Sbjct: 284 QINPVQTEVLYTKAIELAGLTGEETVIDVYCGTGTIGLS--AARKAKRVIGIEIVPSAVE 341
Query: 337 SFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHAL 391
++ R + I + + L + DV +VDPPRKGLD + + +L
Sbjct: 342 DAKRNAVRNGIANAEFICGDAGVCTAQLLERRIQPDVAIVDPPRKGLDGTTIDSL 396
>gi|423681227|ref|ZP_17656066.1| hypothetical protein MUY_01052 [Bacillus licheniformis WX-02]
gi|383438001|gb|EID45776.1| hypothetical protein MUY_01052 [Bacillus licheniformis WX-02]
Length = 468
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/371 (22%), Positives = 152/371 (40%), Gaps = 71/371 (19%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIV---DEATDFFKSIGLLDF--TFDSCRLYGWR 101
C ++ C GC + R I++ + T F IG +D T + +R
Sbjct: 87 CIIYEQCGGCQLQHLAYEEQLKGKRDIVIQSLERHTRF--DIGKMDIRPTIGMENPWHYR 144
Query: 102 CRAKLAVRGTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYD 160
+++ + + ++ GLY +H +V I C HP N + ++Q +++ + Y+
Sbjct: 145 NKSQFQLGLSKNGKMVAGLYGLDSHRLVPITECIVQHPATNKTTQTVKQVLEDFGISVYN 204
Query: 161 EDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLW 220
E RTGD+R + V + G+VQ+ LV + E P E +AE +
Sbjct: 205 ERKRTGDVRTIVTRVG-----------FETGEVQVVLV--TSKEDLPRK---ELIAEEI- 247
Query: 221 RNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQA 280
+ R + SV N + +V+FG+ R L G E +G + L+ +F Q
Sbjct: 248 -----KKRLPEVTSVIQNVNKAKTSVVFGDDTRLLAGNMVIQEFLGEVSFELSARAFFQL 302
Query: 281 NTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSF 338
N L +++K V D Y G G IG+ +A K ++ +++ KES
Sbjct: 303 NPIQTVKLYDEVKKAAKLTGREKVVDAYCGVGTIGMWIADGAK--EIRGMDVIKES---- 356
Query: 339 EKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPPRKGL 383
+ N H +N+ ++ G+ DV++VDPPR G
Sbjct: 357 -------IDDANQNAKKHGIENA----RYVTGTAEHWLPKWTKEGFRPDVVIVDPPRTGC 405
Query: 384 DSSLVHALQSI 394
D + + ++ +
Sbjct: 406 DRTFLDTIRQV 416
>gi|251782756|ref|YP_002997059.1| hypothetical protein SDEG_1350 [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|242391386|dbj|BAH81845.1| hypothetical protein SDEG_1350 [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
Length = 453
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 157/344 (45%), Gaps = 50/344 (14%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A++ VR + G +++ +H++V I I+ + R+ ++ +V+P
Sbjct: 125 AYRNKAQVPVRRVNGQLETGFFRKHSHDLVPISDYYIQDKEIDRLINFTRELLRRFDVKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE +TG +R++ + Y+ G++ + LV P +++ +
Sbjct: 185 YDEKGQTGLIRHIVVRRGHYS-----------GEMMLVLVTTR-----PKVFRVDQVI-- 226
Query: 219 LWRNGGSRSREHY--IHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
S+ E + + S+ N N IFG ++ L G+ +++ G D +++ S
Sbjct: 227 ------SKIVESFPAVVSIIQNINDKNTNAIFGKDFKTLYGKDTITDSMLGNDFAISAQS 280
Query: 277 FGQANTRAFDILLRKL-QKYVPYG-----ASVTDLYAGAGVIGLSLAAARKCRSVKCVEI 330
F Q NT ++ KL Q + + V D Y+G G IGLS A+ ++V VE+
Sbjct: 281 FYQVNT----VMAEKLYQTAIAFSDLSEDDVVIDAYSGIGTIGLSF--AKTVKAVYGVEV 334
Query: 331 NKESQLSFEKTVSRLPKSVDGNISWHNADNSIE--PLSWL---VGSDVLVVDPPRKGLDS 385
+ + ++ +R +G + H ++ E +W + V++VDPPRKGL
Sbjct: 335 IEAAVKDAQQNAAR-----NGITNVHFVADTAENAMATWAKEDIKPSVILVDPPRKGLTE 389
Query: 386 SLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQ 429
S + A S+ +K +S + ++M ++ KR L K VQ
Sbjct: 390 SFIQA--SVAMGPQKITYVSCNPATMARDIKRYQDLGYKLTKVQ 431
>gi|257865847|ref|ZP_05645500.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
EC30]
gi|257872181|ref|ZP_05651834.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
EC10]
gi|257799781|gb|EEV28833.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
EC30]
gi|257806345|gb|EEV35167.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
EC10]
Length = 458
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 92/380 (24%), Positives = 156/380 (41%), Gaps = 64/380 (16%)
Query: 33 PSSLPLDPPAANLPSLTCALQCPHFQSCSGCTHEFNLH------RPIIVDEATDFFKSIG 86
PSS + PP C + C GC + ++ + ++ +A + FK G
Sbjct: 67 PSSNRIQPP------------CKFYDRCGGCQLQHLVYDKQLDFKKDLLKQALEKFKPKG 114
Query: 87 LLDFTF-DSCRL---YGWRCRAKLAVRGTSTSPLI--GLYQEGTHNVVDIPHCKAHHPRI 140
F D+ + + +R +A+ +R S + I GLY+ +H +V I C
Sbjct: 115 YQQFELRDTLGMDVPWHYRNKAQFQLRYNSQTKRIEAGLYEMESHRLVAIDDCLVQEQDT 174
Query: 141 NAAVELLRQGIKELNVEPYDEDDRTGDLR--YVQMAVTTYNTSLPASERYRNGKVQITLV 198
+ + Q + + + YDE +G LR V++ + T G+VQ+ +
Sbjct: 175 QKVINGIVQLLNKYQIPIYDERKNSGILRTLMVRIGIAT-------------GEVQVVFI 221
Query: 199 WNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGE 258
NS N+ L R R + + S+ N Q +V+ G HL G+
Sbjct: 222 TNSVKLPQKNA---------LIREINQRLPQ--VVSIMQNVQNKKTSVVMGEETIHLWGK 270
Query: 259 TDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSL 316
E + + L+ +F Q N + IL ++ K + +V D Y G G IGLS+
Sbjct: 271 EAIEERLNELTFDLSARAFFQLNPQQTSILYQEGLKALDLSKNETVVDAYCGVGTIGLSV 330
Query: 317 AAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWL---VGS 371
A K V+ ++I ++ + ++ R+ G + H + E L W
Sbjct: 331 APYAK--EVRGMDIIPQAIENAQENARRI-----GAQNTHYETGTAEELLPKWFNEGFKP 383
Query: 372 DVLVVDPPRKGLDSSLVHAL 391
D ++VDPPR GLD L+ AL
Sbjct: 384 DSIIVDPPRTGLDERLLQAL 403
>gi|366089481|ref|ZP_09455954.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus acidipiscis KCTC
13900]
Length = 456
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 149/334 (44%), Gaps = 56/334 (16%)
Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
+R +A++ R G ++ G+HN + + + PRI+ + +R ++E NV Y
Sbjct: 130 YRNKAQVPARECQGQLTTGFFRRGSHNFIPLEDYEIQDPRIDEVILAVRDILREFNVPAY 189
Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
+E+ TG +R V + Y +G+V + L+ ++ KL+ A
Sbjct: 190 NEEKHTGVIRNVMVRRGHY-----------SGEVMVVLITRTK--------KLKGAAGI- 229
Query: 220 WRNGGSRSREH--YIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
++ +E + SV N NVI G + + G + + G+ +++ SF
Sbjct: 230 ----SAKIQEQCPDVVSVQQNINPEQTNVILGKTTKVMRGRNYIQDQLNGLTFNISAQSF 285
Query: 278 GQAN-TRAFDILLRKLQKYVPYG-ASVTDLYAGAGVIGLSLA-AARKCRSVKCV------ 328
Q N + + R ++ +G +V D Y G G I LSLA AA+K V+ V
Sbjct: 286 YQVNPVQTEKLYARAVELADLHGDETVIDAYCGIGTISLSLAKAAKKVYGVEIVPQAIED 345
Query: 329 -----EINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGL 383
+NK L FE + + W AD+ I+P V+VVDPPRKGL
Sbjct: 346 AKENARLNKLDNLHFEVGTAE-----ETMKKW--ADDGIKPA-------VIVVDPPRKGL 391
Query: 384 DSSLVHALQSIGSAERKAKSLSESSSSMVKEEKR 417
+ + A + +A +K +S + +++V++ +R
Sbjct: 392 TADFIEA--AAKTAPQKIVYVSCNPATLVRDIER 423
>gi|417928049|ref|ZP_12571437.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
dysgalactiae subsp. equisimilis SK1250]
gi|340765923|gb|EGR88449.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
dysgalactiae subsp. equisimilis SK1250]
Length = 467
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 158/344 (45%), Gaps = 50/344 (14%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A++ VR + G +++ +H++V I I+ + R+ ++ +V+P
Sbjct: 139 AYRNKAQVPVRRVNGQLETGFFRKHSHDLVPISDYYIQDKEIDRLINFTRELLRRFDVKP 198
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R++ + Y+ G++ + LV P +++ +
Sbjct: 199 YDEKEQTGLIRHIVVRRGHYS-----------GEMMLVLVTTR-----PKVFRVDQVI-- 240
Query: 219 LWRNGGSRSREHY--IHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
S+ E + + S+ N N IFG ++ L G+ +++ G D +++ S
Sbjct: 241 ------SKIVESFPAVVSIIQNINDKNTNAIFGKDFKTLYGKDTITDSMLGNDYAISAQS 294
Query: 277 FGQANTRAFDILLRKL-QKYVPYG-----ASVTDLYAGAGVIGLSLAAARKCRSVKCVEI 330
F Q NT ++ KL Q + + V D Y+G G IGLS A+ ++V VE+
Sbjct: 295 FYQVNT----VMAEKLYQTAIAFSDLSEDDVVIDAYSGIGTIGLSF--AKTVKAVYGVEV 348
Query: 331 NKESQLSFEKTVSRLPKSVDGNISWHNADNSIE--PLSWL---VGSDVLVVDPPRKGLDS 385
+ + ++ +R +G + H ++ E +W + V++VDPPRKGL
Sbjct: 349 IEAAVKDAQQNAAR-----NGITNVHFVADTAENAMATWAKEGIKPSVILVDPPRKGLTE 403
Query: 386 SLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQ 429
S + A S+ +K +S + ++M ++ KR L K VQ
Sbjct: 404 SFIQA--SVAMGPQKITYVSCNPATMARDIKRYQDLGYKLTKVQ 445
>gi|312112373|ref|YP_003990689.1| TrmA family RNA methyltransferase [Geobacillus sp. Y4.1MC1]
gi|311217474|gb|ADP76078.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y4.1MC1]
Length = 459
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/352 (23%), Positives = 149/352 (42%), Gaps = 42/352 (11%)
Query: 54 CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDFTFDSCRL-----YGWRCRAK 105
CP ++ C GC + ++ + + IG L+ + + +R +A+
Sbjct: 78 CPIYKQCGGCQLQHLSYDGQLRAKQKQVKEVMARIGKLENVIVHPVIGMKNPWRYRNKAQ 137
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
+ V + G YQE +H ++D+ C +A V +++ ++ + Y+E
Sbjct: 138 VPVGEREGRLVAGFYQERSHEIIDMDACLIQQEMNDAVVRTVKKICEKYRIPVYNEAAHK 197
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRNGG 224
G LR++ MA RY ++ +V +R + P+ K+ + + E +
Sbjct: 198 GVLRHI-MA------------RYGAATQEVMVVLITRTAELPHKKKIVQEIIESVPN--- 241
Query: 225 SRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRA 284
+ S+ N NVI G+ + L G ++ +G I +++ SF Q N
Sbjct: 242 -------VKSIIQNINPKKTNVIMGDETKVLWGAEYIYDYIGDIQFAISARSFYQVNPAQ 294
Query: 285 FDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTV 342
+L K +Y +V D Y G G I L L A+K + V VE+ E+ + K
Sbjct: 295 TKVLYEKALEYAQLTGEETVIDAYCGIGTISLFL--AKKAKKVFGVEVVPEA-IEDAKRN 351
Query: 343 SRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
+ L + + + A+ I W + +D +VVDPPRKG D +L+ +
Sbjct: 352 AALNRITNVEFAVGEAEAVIP--KWYKQGIRADCIVVDPPRKGCDETLLQTI 401
>gi|335429661|ref|ZP_08556559.1| RNA methyltransferase, TrmA family protein [Haloplasma contractile
SSD-17B]
gi|334889671|gb|EGM27956.1| RNA methyltransferase, TrmA family protein [Haloplasma contractile
SSD-17B]
Length = 454
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/353 (22%), Positives = 147/353 (41%), Gaps = 44/353 (12%)
Query: 54 CPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFTFDSC----RLYGWRCRA 104
C + C GC ++E L D K+I + T D Y +R +
Sbjct: 75 CAIYDRCGGCQLMHVSYEGQLKEK--QRYVLDVMKTIAKHNVTVDDIIPMKDPYRYRNKI 132
Query: 105 KLAVRGTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
++A ++ G Y+E TH VV + C +A V ++ +K+ + PYDED
Sbjct: 133 QVAFSSNKKGDIVAGFYEENTHKVVQMETCHIQDKIADAIVGSFKEIMKQYKIRPYDEDK 192
Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNG 223
R G +R++ + R + + ++ S N+ ++ +++L
Sbjct: 193 RVGLIRHILI------------RRGFHTDQTMVVIVTSSNKFPGRNNVVKAL-------- 232
Query: 224 GSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTR 283
R++ I ++ N +++ G + R L G+ + + G+ ++P SF Q N
Sbjct: 233 --RNKHPEIDTIIQNTNPRKTSIVLGEQERVLFGKGYIVDVLCGMKFKISPKSFYQVNPV 290
Query: 284 AFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
+ L K + V D Y G G IG L A+RK +V VE+NK+ + +
Sbjct: 291 QTETLYNKAIDLANLKGNERVLDAYCGIGTIG--LIASRKAGNVIGVEVNKD---AIQDA 345
Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHAL 391
+ + N+ + AD S+ + + DV+ +DPPR G D + +L
Sbjct: 346 IGNAKINNVKNVRFFTADASVFMVELSNNNEKIDVVFLDPPRSGCDERFLKSL 398
>gi|411116619|ref|ZP_11389106.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Oscillatoriales
cyanobacterium JSC-12]
gi|410712722|gb|EKQ70223.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Oscillatoriales
cyanobacterium JSC-12]
Length = 482
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 136/308 (44%), Gaps = 30/308 (9%)
Query: 87 LLDFTFDSCRLYGWRCRAKLAVRGTSTSPL-IGLYQEGTHNVVDIPHCKAHHPRINAAVE 145
++D + G+R +A VR + T + G YQ+G+H+++++ C R+N +
Sbjct: 139 IVDPVLTAASELGYRNKATYPVRRSQTGQVQAGYYQKGSHHLINLNQCPIQDDRLNPLLA 198
Query: 146 LLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEK 205
++Q I+ YDE G +RY+ + + R G++ +TLV +
Sbjct: 199 EVKQDIQTRGWGIYDETKHRGKIRYLSLRIGR-----------RTGEMLLTLVVKDAHLL 247
Query: 206 SPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENV 265
E A +L R G + V N N IFG R + G+ E
Sbjct: 248 GLE----EQAATWLKRYPG-------LVGVVLNVNGDRTNAIFGAETRCIAGQPYLQELF 296
Query: 266 GGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSV 325
G+ + P +F Q NT A + L++ + Y+ S T L A G+ ++L A+ +
Sbjct: 297 AGLTFHIRPDTFFQVNTEAAEALVQVVLAYLNLQGSETLLDAYCGIGTMTLPLAQHVKQA 356
Query: 326 KCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWLVGSDVLVVDPPRKGL 383
+EI E + ++ S +I++H ++E L + + D++++DPPRKG
Sbjct: 357 IAIEIQPE---AIQQAQQNAMLSGLHHITFHTG--TVENLLPTIDMQPDIILLDPPRKGC 411
Query: 384 DSSLVHAL 391
+++ L
Sbjct: 412 SKAVIKTL 419
>gi|449891037|ref|ZP_21787689.1| putative RNA methyltransferase [Streptococcus mutans SF12]
gi|449256902|gb|EMC54713.1| putative RNA methyltransferase [Streptococcus mutans SF12]
Length = 451
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/342 (25%), Positives = 153/342 (44%), Gaps = 46/342 (13%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A++ VR + G +++ +H ++ I I+ + R ++ +++P
Sbjct: 125 AYRNKAQVPVRRVNGQLETGFFRKNSHALMPIEDYYIQDKEIDRLINFTRDLLRRFDLKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R +L + G++ + LV +R++ ++E + E
Sbjct: 185 YDEKEQTGLIR-----------NLVVRRGHYTGQIMLVLV-TTRSKIF----RIEQMVEK 228
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ S + S+ N N IFG+ +R L GE + + G ++ SF
Sbjct: 229 IV------SEFPAVKSIIQNINDRNTNAIFGSEFRTLYGEDTIEDTMLGNRYIISAQSFY 282
Query: 279 QANTRAFDILLRKL-QKYVPYG-----ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
Q NT ++ KL Q + + +V D Y+G G IGLS A+K + V VE+ +
Sbjct: 283 QVNT----VMAEKLYQTAIDFSDLTPDDTVIDAYSGIGTIGLSF--AKKVKDVYGVEVIE 336
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LSWL---VGSDVLVVDPPRKGLDSSL 387
+ EK +++ + H +S E SW + DV++VDPPRKGL S
Sbjct: 337 AAVRDAEKNA-----ALNNITNVHYVADSAEKAMASWSKRGIKPDVILVDPPRKGLTESF 391
Query: 388 VHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQ 429
+ A S RK +S + ++M ++ K L K VQ
Sbjct: 392 IEA--STAMQPRKITYISCAPATMARDVKLYEELGYKLVKVQ 431
>gi|52079266|ref|YP_078057.1| tRNA (uracil-5-)-methyltransferase [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|52002477|gb|AAU22419.1| tRNA (uracil-5-)-methyltransferase [Bacillus licheniformis DSM 13 =
ATCC 14580]
Length = 463
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/371 (22%), Positives = 152/371 (40%), Gaps = 71/371 (19%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIV---DEATDFFKSIGLLDF--TFDSCRLYGWR 101
C ++ C GC + R I++ + T F IG +D T + +R
Sbjct: 82 CIIYEQCGGCQLQHLAYEEQLKGKRDIVIQSLERHTRF--DIGKMDIRPTIGMENPWHYR 139
Query: 102 CRAKLAVRGTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYD 160
+++ + + ++ GLY +H +V I C HP N + ++Q +++ + Y+
Sbjct: 140 NKSQFQLGLSKNGKMVAGLYGLDSHRLVPITECIVQHPATNKTTQTVKQVLEDFGISVYN 199
Query: 161 EDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLW 220
E RTGD+R + V + G+VQ+ LV + E P E +AE +
Sbjct: 200 ERKRTGDVRTIVTRVG-----------FETGEVQVVLV--TSKEDLPRK---ELIAEEI- 242
Query: 221 RNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQA 280
+ R + SV N + +V+FG+ R L G E +G + L+ +F Q
Sbjct: 243 -----KKRLPEVTSVIQNVNKAKTSVVFGDDTRLLAGNMVIQEFLGEVSFELSARAFFQL 297
Query: 281 NTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSF 338
N L +++K V D Y G G IG+ +A K ++ +++ KES
Sbjct: 298 NPIQTVKLYDEVKKAAKLTGREKVVDAYCGVGTIGMWIADGAK--EIRGMDVIKES---- 351
Query: 339 EKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPPRKGL 383
+ N H +N+ ++ G+ DV++VDPPR G
Sbjct: 352 -------IDDANQNAKKHGIENA----RYVTGTAEHWLPKWTKEGFRPDVVIVDPPRTGC 400
Query: 384 DSSLVHALQSI 394
D + + ++ +
Sbjct: 401 DRTFLDTIRQV 411
>gi|150019658|ref|YP_001311912.1| RNA methyltransferase [Clostridium beijerinckii NCIMB 8052]
gi|149906123|gb|ABR36956.1| RNA methyltransferase, TrmA family [Clostridium beijerinckii NCIMB
8052]
Length = 459
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 89/374 (23%), Positives = 157/374 (41%), Gaps = 66/374 (17%)
Query: 53 QCPHFQSCSGCT---HEFNLHRPIIVDEATDFFKSIGLL--DFTFDSCRL---YGWRCRA 104
+C +++ C GCT ++ + D + IG L D ++ + Y +R +
Sbjct: 71 ECNYYEKCGGCTLMHSNYDSQLKFKYNRVKDCIERIGGLSGDIVKNTIGMEFPYRYRNKG 130
Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
++ T +G + E TH VVD+ C + ++++R +K+ ++ P +D+
Sbjct: 131 IYSIALTDNELSMGFFSEKTHEVVDMDKCLIQDEETDKIIKIIRNWMKKYSILPARKDN- 189
Query: 165 TGDLRYVQMAVTTYNTSLPASERYRNG--KVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
++ L + RNG +I +V + +++ P ++L N
Sbjct: 190 -----------LFFSEGLIRNVMVRNGFKTNEIMVVLITTDKEIPKKEELIKDIRLEVEN 238
Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
+ V N T N+++ G++ L G+ + +G +++P SF Q N
Sbjct: 239 ---------LKGVIQNISTKNNSLVLGDKCITLWGQDYISDYIGKYKFNISPLSFFQINP 289
Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAA-ARKCRSVKCV----------- 328
++L K +Y V D Y GAG I L L+ ARK V+ V
Sbjct: 290 IQTEVLYNKALEYADLSGDEIVFDAYCGAGTITLFLSQNARKVYGVEIVEQAIDNAIDNA 349
Query: 329 EIN--KESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSS 386
EIN S+ K+ +P+ + N I+P D++VVDPPRKG D
Sbjct: 350 EINGIDNSEFYVGKSEEVIPELI---------KNGIKP-------DIIVVDPPRKGCDIK 393
Query: 387 LVHALQSIGSAERK 400
L++A IG A+ K
Sbjct: 394 LLNA---IGEAKPK 404
>gi|319646952|ref|ZP_08001180.1| YfjO protein [Bacillus sp. BT1B_CT2]
gi|317391011|gb|EFV71810.1| YfjO protein [Bacillus sp. BT1B_CT2]
Length = 463
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/371 (22%), Positives = 152/371 (40%), Gaps = 71/371 (19%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIV---DEATDFFKSIGLLDF--TFDSCRLYGWR 101
C ++ C GC + R I++ + T F IG +D T + +R
Sbjct: 82 CIIYEQCGGCQLQHLAYEEQLKGKRDIVIQSLERHTRF--DIGKMDIRPTIGMENPWHYR 139
Query: 102 CRAKLAVRGTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYD 160
+++ + + ++ GLY +H +V I C HP N + ++Q +++ + Y+
Sbjct: 140 NKSQFQLGLSKNGKMVAGLYGLDSHRLVPITECIVQHPATNKTTQTVKQVLEDFGISVYN 199
Query: 161 EDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLW 220
E RTGD+R + V + G+VQ+ LV + E P E +AE +
Sbjct: 200 ERKRTGDVRTIVTRVG-----------FETGEVQVVLV--TSKEDLPRK---ELIAEEI- 242
Query: 221 RNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQA 280
+ R + SV N + +V+FG+ R L G E +G + L+ +F Q
Sbjct: 243 -----KKRLPEVTSVIQNVNKAKTSVVFGDDTRLLAGNMVIQEFLGEVSFELSARAFFQL 297
Query: 281 NTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSF 338
N L +++K V D Y G G IG+ +A K ++ +++ KES
Sbjct: 298 NPIQTVKLYDEVKKAAKLTGREKVVDAYCGVGTIGMWIADGAK--EIRGMDVIKES---- 351
Query: 339 EKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPPRKGL 383
+ N H +N+ ++ G+ DV++VDPPR G
Sbjct: 352 -------IDDANQNAKKHGIENA----RYVTGTAEHWLPKWTKEGFRPDVVIVDPPRTGC 400
Query: 384 DSSLVHALQSI 394
D + + ++ +
Sbjct: 401 DRTFLDTIRQV 411
>gi|404488132|ref|YP_006712238.1| 23rRNA methyltransferase YfjO [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|52347133|gb|AAU39767.1| putative 23rRNA methyltransferase YfjO [Bacillus licheniformis DSM
13 = ATCC 14580]
Length = 468
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/371 (22%), Positives = 152/371 (40%), Gaps = 71/371 (19%)
Query: 54 CPHFQSCSGCT-------HEFNLHRPIIV---DEATDFFKSIGLLDF--TFDSCRLYGWR 101
C ++ C GC + R I++ + T F IG +D T + +R
Sbjct: 87 CIIYEQCGGCQLQHLAYEEQLKGKRDIVIQSLERHTRF--DIGKMDIRPTIGMENPWHYR 144
Query: 102 CRAKLAVRGTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYD 160
+++ + + ++ GLY +H +V I C HP N + ++Q +++ + Y+
Sbjct: 145 NKSQFQLGLSKNGKMVAGLYGLDSHRLVPITECIVQHPATNKTTQTVKQVLEDFGISVYN 204
Query: 161 EDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLW 220
E RTGD+R + V + G+VQ+ LV + E P E +AE +
Sbjct: 205 ERKRTGDVRTIVTRVG-----------FETGEVQVVLV--TSKEDLPRK---ELIAEEI- 247
Query: 221 RNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQA 280
+ R + SV N + +V+FG+ R L G E +G + L+ +F Q
Sbjct: 248 -----KKRLPEVTSVIQNVNKAKTSVVFGDDTRLLAGNMVIQEFLGEVSFELSARAFFQL 302
Query: 281 NTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSF 338
N L +++K V D Y G G IG+ +A K ++ +++ KES
Sbjct: 303 NPIQTVKLYDEVKKAAKLTGREKVVDAYCGVGTIGMWIADGAK--EIRGMDVIKES---- 356
Query: 339 EKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPPRKGL 383
+ N H +N+ ++ G+ DV++VDPPR G
Sbjct: 357 -------IDDANQNAKKHGIENA----RYVTGTAEHWLPKWTKEGFRPDVVIVDPPRTGC 405
Query: 384 DSSLVHALQSI 394
D + + ++ +
Sbjct: 406 DRTFLDTIRQV 416
>gi|449888256|ref|ZP_21787218.1| putative RNA methyltransferase [Streptococcus mutans SA41]
gi|449251500|gb|EMC49511.1| putative RNA methyltransferase [Streptococcus mutans SA41]
Length = 456
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/342 (25%), Positives = 153/342 (44%), Gaps = 46/342 (13%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A++ VR + G +++ +H+++ I I+ + R ++ +++P
Sbjct: 125 AYRNKAQVPVRRVNGQLETGFFRKNSHDLMPIEDYYIQDKEIDRLINFTRDLLRRFDLKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R +L + G++ + LV +R++ ++E + E
Sbjct: 185 YDEKEQTGLIR-----------NLVVRRGHYTGQIMLVLV-TTRSKIF----RIEQMIEK 228
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ S + S+ N N IFG+ +R L GE + + G ++ SF
Sbjct: 229 IV------SEFPAVKSIIQNINDRNTNAIFGSEFRTLYGEDTIEDTMLGNRYIISAQSFY 282
Query: 279 QANTRAFDILLRKL-QKYVPYG-----ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
Q NT ++ KL Q + + +V D Y+G G IGLS A+K + V VE+ +
Sbjct: 283 QVNT----VMAEKLYQTAIDFSDLAPDDTVIDAYSGIGTIGLSF--AKKVKDVYGVEVIE 336
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LSWL---VGSDVLVVDPPRKGLDSSL 387
+ EK +++ + H +S E SW + DV++VDPPRKGL S
Sbjct: 337 AAVRDAEKNA-----ALNNITNVHYVADSAEKAMASWSKRGIKPDVILVDPPRKGLTESF 391
Query: 388 VHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQ 429
+ A S RK +S ++M ++ K L K VQ
Sbjct: 392 IKA--STAMQPRKITYISCDPATMARDVKLYEELGYKLVKVQ 431
>gi|449911011|ref|ZP_21794966.1| putative RNA methyltransferase [Streptococcus mutans OMZ175]
gi|449258825|gb|EMC56384.1| putative RNA methyltransferase [Streptococcus mutans OMZ175]
Length = 451
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/342 (25%), Positives = 153/342 (44%), Gaps = 46/342 (13%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A++ VR + G +++ +H ++ I I+ + R ++ +++P
Sbjct: 125 AYRNKAQVPVRRVNGQLETGFFRKNSHALMPIEDYYIQDKEIDRLINFTRDLLRRFDLKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R +L + G++ + LV +R++ ++E + E
Sbjct: 185 YDEKEQTGLIR-----------NLVVRRGHYTGQIMLVLV-TTRSKIF----RIEQMVEK 228
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ S + S+ N N IFG+ +R L GE + + G ++ SF
Sbjct: 229 IV------SEFPAVKSIIQNINDRNTNAIFGSEFRTLYGEDTIEDTMLGNRYIISAQSFY 282
Query: 279 QANTRAFDILLRKL-QKYVPYG-----ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
Q NT ++ KL Q + + +V D Y+G G IGLS A+K + V VE+ +
Sbjct: 283 QVNT----VMAEKLYQTAIDFSDLAPDDTVIDAYSGIGTIGLSF--AKKVKDVYGVEVIE 336
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LSWL---VGSDVLVVDPPRKGLDSSL 387
+ EK +++ + H +S E SW + DV++VDPPRKGL S
Sbjct: 337 AAVRDAEKNA-----ALNNITNVHYVADSAEKAMASWSKRGIKPDVILVDPPRKGLTESF 391
Query: 388 VHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQ 429
+ A S RK +S + ++M ++ K L K VQ
Sbjct: 392 IKA--STAMQPRKITYISCAPATMARDVKLYEELGYKLVKVQ 431
>gi|428212815|ref|YP_007085959.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Oscillatoria acuminata
PCC 6304]
gi|428001196|gb|AFY82039.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Oscillatoria acuminata
PCC 6304]
Length = 476
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 141/310 (45%), Gaps = 41/310 (13%)
Query: 98 YGWRCRAKLAV-RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNV 156
+G+R +A + R +S G Y++ +H++V+I C R+N + ++Q I++
Sbjct: 142 FGYRNKATYPLSRSSSGKVQAGYYEKNSHHLVNINQCPVQDSRLNPLLAEVKQDIQDRGW 201
Query: 157 EPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLA 216
Y+E + G+LR++ + + R G++ +TLV +R + E L
Sbjct: 202 SIYNETEHRGNLRHLALQIGR-----------RTGQILLTLVSANRKLMDIEAQAEEWL- 249
Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
SR + V N+ + N I G R + G++ F + G+++ L +
Sbjct: 250 ----------SRYPDLVGVCLNYNPNRTNAILGEETRCVAGQSYFVDEFAGVELQLRSDT 299
Query: 277 FGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
F Q N ++LL + + + + D Y G G L L A++ + +EIN +
Sbjct: 300 FFQVNPETAEVLLETIASRLNLQGTERLVDAYCGIGTFTLPL--AKRVQQAIGLEINPAA 357
Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------DVLVVDPPRKGLDS 385
++ + ++L N+S+H + S+E L + S D++++DPPRKG D
Sbjct: 358 -IAIAQENAQLNSLT--NVSFH--EGSVEKLLPQLESLGLPQGEKPDIVLLDPPRKGCDR 412
Query: 386 SLVHALQSIG 395
S++ L I
Sbjct: 413 SVLETLIQIA 422
>gi|450081553|ref|ZP_21851793.1| putative RNA methyltransferase [Streptococcus mutans N66]
gi|449215137|gb|EMC15352.1| putative RNA methyltransferase [Streptococcus mutans N66]
Length = 451
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/342 (25%), Positives = 153/342 (44%), Gaps = 46/342 (13%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A++ VR + G +++ +H ++ I I+ + R ++ +++P
Sbjct: 125 AYRNKAQVPVRRVNGQLETGFFRKNSHALMPIEDYYIQDKEIDRLINFTRDLLRRFDLKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R +L + G++ + LV +R++ ++E + E
Sbjct: 185 YDEKEQTGLIR-----------NLVVRRGHYTGQIMLVLV-TTRSKIF----RIEQMIEK 228
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ S + S+ N N IFG+ +R L GE + + G ++ SF
Sbjct: 229 II------SEFPAVKSIIQNINDRNTNAIFGSEFRTLYGEDTIEDTMLGNRYIISAQSFY 282
Query: 279 QANTRAFDILLRKL-QKYVPYG-----ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
Q NT ++ KL Q + + +V D Y+G G IGLS A+K + V VE+ +
Sbjct: 283 QVNT----VMAEKLYQTAIDFSDLTPDDTVIDAYSGIGTIGLSF--AKKVKDVYGVEVIE 336
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LSWL---VGSDVLVVDPPRKGLDSSL 387
+ EK +++ + H +S E SW + DV++VDPPRKGL S
Sbjct: 337 AAVRDAEKNA-----ALNNITNVHYVADSAEKAMASWSKRGIKPDVILVDPPRKGLTESF 391
Query: 388 VHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQ 429
+ A S RK +S + ++M ++ K L K VQ
Sbjct: 392 IEA--STAMQPRKITYISCAPATMARDVKLYEELGYKLVKVQ 431
>gi|395244171|ref|ZP_10421145.1| 23S rRNA (Uracil-5-)-methyltransferase [Lactobacillus hominis CRBIP
24.179]
gi|394483620|emb|CCI82153.1| 23S rRNA (Uracil-5-)-methyltransferase [Lactobacillus hominis CRBIP
24.179]
Length = 448
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 146/344 (42%), Gaps = 65/344 (18%)
Query: 91 TFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQG 150
T S + G+R +A++ VR IG ++ +H++V + + P I+ + +R
Sbjct: 115 TLPSPQEVGYRNKAQVPVRKVKGQLDIGFFRRHSHDLVPLTNFFTTDPEIDRVLVAVRDI 174
Query: 151 IKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSD 210
+++ NV YDE G++RY L G++ + LV
Sbjct: 175 LRKYNVPAYDEIHNKGEIRY-----------LDVRRSKATGEIMVILV------------ 211
Query: 211 KLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDI 270
L E L S+ + S+ N NVI G + L GE + +G +
Sbjct: 212 ALHKDFEHLQDITQEISQIDKVTSIVLNHNPKKTNVILGKKDYLLWGEPQITDKIGDVSF 271
Query: 271 SLAPSSFGQANT----RAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVK 326
++P SF Q N+ R +D+ ++K + V D Y+G G IGLS+ A+ ++V+
Sbjct: 272 KISPQSFFQINSLQTPRLYDLAIQKAD--LKPDDVVIDAYSGIGTIGLSV--AKHVKAVR 327
Query: 327 CVEINKESQLSFEKTVSRLPKSVDGNISWHNAD-NSIEPLSWLVG--------------- 370
+E+ K P D N NA N I ++VG
Sbjct: 328 GMEVIK-------------PAVDDANA---NAKLNGITNAEYVVGKAEEVMPRWAKEGLK 371
Query: 371 SDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKE 414
+DV+ VDPPRKGL + A ++ + +K +S + ++MV++
Sbjct: 372 TDVIFVDPPRKGLTPEFIDA--AVETDPKKIVYISCNPATMVRD 413
>gi|24379246|ref|NP_721201.1| RNA methyltransferase [Streptococcus mutans UA159]
gi|449863153|ref|ZP_21778084.1| putative RNA methyltransferase [Streptococcus mutans U2B]
gi|449872208|ref|ZP_21781416.1| putative RNA methyltransferase [Streptococcus mutans 8ID3]
gi|449984603|ref|ZP_21819149.1| putative RNA methyltransferase [Streptococcus mutans NFSM2]
gi|50401575|sp|Q8DUV4.1|Y788_STRMU RecName: Full=Uncharacterized RNA methyltransferase SMU_788
gi|24377161|gb|AAN58507.1|AE014920_5 putative RNA methyltransferase [Streptococcus mutans UA159]
gi|449154673|gb|EMB58238.1| putative RNA methyltransferase [Streptococcus mutans 8ID3]
gi|449180021|gb|EMB82203.1| putative RNA methyltransferase [Streptococcus mutans NFSM2]
gi|449265136|gb|EMC62463.1| putative RNA methyltransferase [Streptococcus mutans U2B]
Length = 451
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 86/342 (25%), Positives = 153/342 (44%), Gaps = 46/342 (13%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A++ VR + G +++ +H ++ I I+ + R ++ +++P
Sbjct: 125 AYRNKAQVPVRRVNGQLETGFFRKNSHALMPIEDYYIQDKEIDRLINFTRDLLRRFDLKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R +L + G++ + LV +R++ ++E + E
Sbjct: 185 YDEKEQTGLIR-----------NLVVRRGHYTGQIMLVLV-TTRSKIF----RIEQMIEK 228
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ S + S+ N N IFG+ +R L GE + + G ++ SF
Sbjct: 229 II------SEFPAVKSIIQNINDRNTNAIFGSEFRTLYGEDTIEDTMLGNRYIISAQSFY 282
Query: 279 QANTRAFDILLRKL-QKYVPYG-----ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
Q NT ++ KL Q + + +V D Y+G G IGLS A+K + V VE+ +
Sbjct: 283 QVNT----VMAEKLYQTAIDFSDLTPDDTVIDAYSGIGTIGLSF--AKKVKDVYGVEVIE 336
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LSWL---VGSDVLVVDPPRKGLDSSL 387
+ EK +++ + H +S E SW + DV++VDPPRKGL S
Sbjct: 337 AAVRDAEKNA-----ALNNITNVHYVADSAEKAMASWSKRGIKPDVILVDPPRKGLTESF 391
Query: 388 VHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQ 429
+ A S RK +S + ++M ++ K L K VQ
Sbjct: 392 IEA--STAMQPRKITYISCAPATMARDVKLYEELGYKLVKVQ 431
>gi|449959267|ref|ZP_21810100.1| putative RNA methyltransferase [Streptococcus mutans 4VF1]
gi|450138035|ref|ZP_21871956.1| putative RNA methyltransferase [Streptococcus mutans NLML1]
gi|449169281|gb|EMB72060.1| putative RNA methyltransferase [Streptococcus mutans 4VF1]
gi|449234483|gb|EMC33489.1| putative RNA methyltransferase [Streptococcus mutans NLML1]
Length = 451
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 86/342 (25%), Positives = 153/342 (44%), Gaps = 46/342 (13%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A++ VR + G +++ +H ++ I I+ + R ++ +++P
Sbjct: 125 AYRNKAQVPVRRVNGQLETGFFRKNSHALMPIEDYYIQDKEIDRLINFTRDLLRRFDLKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R +L + G++ + LV +R++ ++E + E
Sbjct: 185 YDEKEQTGLIR-----------NLVVRRGHYTGQIMLVLV-TTRSKIF----RIEQMIEK 228
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ S + S+ N N IFG+ +R L GE + + G ++ SF
Sbjct: 229 IV------SEFPAVKSIIQNINDRNTNAIFGSEFRTLYGEDTIEDTMLGNRYVISAQSFY 282
Query: 279 QANTRAFDILLRKL-QKYVPYG-----ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
Q NT I+ KL Q + + +V D Y+G G IGLS A+K + V VE+ +
Sbjct: 283 QVNT----IMAEKLYQTAIDFSDLTPDDTVIDAYSGIGTIGLSF--AKKVKDVYGVEVIE 336
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LSWL---VGSDVLVVDPPRKGLDSSL 387
+ EK +++ + H +S E SW + DV+++DPPRKGL S
Sbjct: 337 AAVRDAEKNA-----ALNNITNVHYVADSAEKAMASWSKRGIKPDVILIDPPRKGLTESF 391
Query: 388 VHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQ 429
+ A S RK +S + ++M ++ K L K VQ
Sbjct: 392 IKA--STAMQPRKITYISCAPATMARDVKLYEELGYKLVKVQ 431
>gi|389819327|ref|ZP_10209257.1| RNA methyltransferase [Planococcus antarcticus DSM 14505]
gi|388463410|gb|EIM05767.1| RNA methyltransferase [Planococcus antarcticus DSM 14505]
Length = 454
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 81/359 (22%), Positives = 146/359 (40%), Gaps = 51/359 (14%)
Query: 54 CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGL-LDFTFDSCRLYGWRCRAK 105
CP +++C GC + R +++ + K + ++ T + +R +++
Sbjct: 77 CPIYEACGGCQLQHMTYNQQLVEKRDLVLQALERYLKGTKVRVEKTIGMEDPWRYRNKSQ 136
Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
R + + GL+ EG+H ++DI C HP +++ ++EL + YD
Sbjct: 137 FQTRLKGSKVIAGLFAEGSHQLLDIDECIVQHPDTTVITNAVKRILEELKMPIYDGKTMK 196
Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGS 225
G +R ++ + G++Q+ LV + K P E L E L
Sbjct: 197 GIIR-----------TIVVRTGVKTGEIQLVLV--TTRSKIPQK---ELLMERL------ 234
Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN---- 281
+ + + S+ N +++FG+ L G+ E +G + L+ +F Q N
Sbjct: 235 KKIDTNLVSIVQNINKEKTSLVFGDETVTLFGKDTIHEELGELAFDLSARAFFQLNPTQT 294
Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLA-AARKCRSVKCVEINKESQLSFEK 340
+ +D + R + + +V D Y G G IGL LA +A++ R + + + + K
Sbjct: 295 VKLYDEIKRAAE--LTGKETVVDAYCGVGTIGLWLADSAKEVRGMDVLHESVVDAKANAK 352
Query: 341 TVSRLPKSVDGNIS-----WHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSI 394
K V G W N P DVL VDPPR GL SL+ + +
Sbjct: 353 AQGYTAKYVTGTAEKWLELWSN--EGFVP-------DVLTVDPPRTGLTDSLLQTILKV 402
>gi|449990523|ref|ZP_21821591.1| putative RNA methyltransferase [Streptococcus mutans NVAB]
gi|449181612|gb|EMB83687.1| putative RNA methyltransferase [Streptococcus mutans NVAB]
Length = 454
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 86/342 (25%), Positives = 153/342 (44%), Gaps = 46/342 (13%)
Query: 99 GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
+R +A++ VR + G +++ +H ++ I I+ + R ++ +++P
Sbjct: 125 AYRNKAQVPVRRVNGQLETGFFRKNSHALMPIEDYYIQDKEIDRLINFTRDLLRRFDLKP 184
Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
YDE ++TG +R +L + G++ + LV +R++ ++E + E
Sbjct: 185 YDEKEQTGLIR-----------NLVVRRGHYTGQIMLVLV-TTRSKIF----RIEQMVEK 228
Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
+ S + S+ N N IFG+ +R L GE + + G ++ SF
Sbjct: 229 IV------SEFPAVKSIIQNINDRNTNAIFGSEFRTLYGEDTIEDTMLGNRYIISAQSFY 282
Query: 279 QANTRAFDILLRKL-QKYVPYG-----ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
Q NT ++ KL Q + + +V D Y+G G IGLS A+K + V VE+ +
Sbjct: 283 QVNT----VMAEKLYQTAIDFSDLTPDDTVIDAYSGIGTIGLSF--AKKVKDVYGVEVIE 336
Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LSWL---VGSDVLVVDPPRKGLDSSL 387
+ EK +++ + H +S E SW + DV++VDPPRKGL S
Sbjct: 337 AAVRDAEKNA-----ALNNITNVHYVADSAEKAMASWSKRGIKPDVILVDPPRKGLTESF 391
Query: 388 VHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQ 429
+ A S RK +S + ++M ++ K L K VQ
Sbjct: 392 IEA--STAMQPRKITYISCAPATMARDVKLYEELGYKLVKVQ 431
>gi|334119702|ref|ZP_08493787.1| RNA methyltransferase, TrmA family [Microcoleus vaginatus FGP-2]
gi|333457864|gb|EGK86485.1| RNA methyltransferase, TrmA family [Microcoleus vaginatus FGP-2]
Length = 470
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 137/305 (44%), Gaps = 36/305 (11%)
Query: 96 RLYGWRCRAKLAVRGTSTSPL-IGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKEL 154
+ G+R +A V ++T + G YQ+ TH +V++ C PR+N ++ +++ I
Sbjct: 143 QFLGYRNKATYPVAISATGQVQAGYYQKSTHKLVNLNQCPVQDPRLNPLLKEVKEDIHWR 202
Query: 155 NVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLES 214
+ + YDE TG+LR++ + + R G++ +TL+ + + E
Sbjct: 203 DWQVYDEKKHTGELRHLSLRIGR-----------RTGEMLLTLIVRTGDLPGIEEQASEW 251
Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
L ++ G V N + NVIFG R + G + E+ G+ L
Sbjct: 252 LKQYPQLAG-----------VCLNINPAQTNVIFGTETRCIAGRSYLRESFAGLKFQLRA 300
Query: 275 SSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
+F Q NT A + LL + + + + D + G G L LA K + I
Sbjct: 301 DTFFQVNTEAAEALLEVMVGELNLQGNEILVDAFCGIGTFTLPLAKQVK------IAIGL 354
Query: 333 ESQ-LSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWLVGSDVLVVDPPRKGLDSSLVH 389
E Q + E+ +RL ++ + ++E L S + D++++DPPRKG D +++
Sbjct: 355 EVQPAAIEQ--ARLNGELNDVRNVEFQAGTVESLLPSLGLTPDIVLLDPPRKGCDRAVLE 412
Query: 390 ALQSI 394
A++ I
Sbjct: 413 AIKEI 417
>gi|357636080|ref|ZP_09133955.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus macacae
NCTC 11558]
gi|357584534|gb|EHJ51737.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus macacae
NCTC 11558]
Length = 451
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 139/302 (46%), Gaps = 40/302 (13%)
Query: 98 YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
+ +R +A++ VR G +++ +H++V I I+ + +R + +++
Sbjct: 124 FAYRNKAQVPVRRIKGQLETGFFRKNSHDLVPIEDFWIQDKEIDRLILYVRDLFRRFDLK 183
Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
PYDE ++TG +R++ + Y G++ + LV SR P ++E + E
Sbjct: 184 PYDEKEQTGLIRHILVRRGHYT-----------GQLMLVLV-TSR----PKIFRIEQMIE 227
Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
+ + + S+ N N I G +R L G + + G +++ SF
Sbjct: 228 KIVEAFPA------VKSIIQNINDQNTNTILGEEFRTLYGNDRIEDIMLGNRYAISAQSF 281
Query: 278 GQANTRAFDILLRKLQKY--VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKES- 334
Q NT + L K ++ V A V D Y+G G IGLS A++ ++V VEI KE+
Sbjct: 282 YQVNTAMAEKLYEKAIEFADVSEDAVVIDAYSGIGTIGLSF--AKQVKAVYGVEIVKEAV 339
Query: 335 QLSFEKTV-SRLPKSVDGNISWHNA-----DNSIEPLSWLVGSDVLVVDPPRKGLDSSLV 388
Q + E V + + +V S A + +I+P D++VVDPPRKGL S +
Sbjct: 340 QDARENAVLNGISNAVYTANSAEKAMAQWSNENIQP-------DLVVVDPPRKGLTESFI 392
Query: 389 HA 390
A
Sbjct: 393 KA 394
>gi|170016553|ref|YP_001727472.1| 23S rRNA (uracil-5-)-methyltransferase [Leuconostoc citreum KM20]
gi|169803410|gb|ACA82028.1| 23S rRNA (uracil-5-)-methyltransferase [Leuconostoc citreum KM20]
Length = 498
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 146/344 (42%), Gaps = 78/344 (22%)
Query: 74 IVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVD 129
++ ++ + F+ G D+ T Y +R +A+ VR +G+Y+ G+H +VD
Sbjct: 143 VIAQSLEKFQPKGWSDYDLRDTIGMANPYEYRNKAQFPVRKIDDVLSVGMYKRGSHELVD 202
Query: 130 IPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYR 189
+P P + +R + +L+V Y+ED G ++ ++ A +
Sbjct: 203 LPIVHTQSPATMKVLRTVRDLLDKLSVSIYNEDKNRGTVK-----------TIVARVSHT 251
Query: 190 NGKVQITLVWNSRNEKSPNSDKL-----ESLAEFLWRNGGSRSREHYIHSVWANFQTSTN 244
G VQ+T V N+ + P L ++L E ++ ++ NF
Sbjct: 252 TGDVQLTFVTNT--DGFPGDVALIAAINQALPE--------------VNGIFQNFNPGRT 295
Query: 245 NVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN----TRAFDILLRKLQKYVPYGA 300
++++G L G+ E V G L+P +F Q N T ++ L L + +
Sbjct: 296 SLVWGEETIKLWGKDYIEETVMGKTFQLSPRAFMQLNHTQMTVVYNEALSALN--LTHAD 353
Query: 301 SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSV-DGNISWHNAD 359
+ D YAG G IGLSL A K V+ +EI +P++V D NI NA
Sbjct: 354 KLVDAYAGVGTIGLSL--ADKAGEVRGMEI--------------IPEAVDDANI---NAK 394
Query: 360 -NSIEPLSWLVGS---------------DVLVVDPPRKGLDSSL 387
N I + VG+ D LVVDPPR GLD++L
Sbjct: 395 INHISNAKYEVGTAEVLFPKWQAEGWLADALVVDPPRTGLDTAL 438
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.132 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,590,340,355
Number of Sequences: 23463169
Number of extensions: 323943716
Number of successful extensions: 1461038
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1630
Number of HSP's successfully gapped in prelim test: 2388
Number of HSP's that attempted gapping in prelim test: 1449451
Number of HSP's gapped (non-prelim): 6095
length of query: 457
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 311
effective length of database: 8,933,572,693
effective search space: 2778341107523
effective search space used: 2778341107523
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 79 (35.0 bits)