BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044572
         (457 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6M9M7|Y1998_PARUW Uncharacterized RNA methyltransferase pc1998 OS=Protochlamydia
           amoebophila (strain UWE25) GN=pc1998 PE=3 SV=1
          Length = 383

 Score =  250 bits (638), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 144/407 (35%), Positives = 205/407 (50%), Gaps = 67/407 (16%)

Query: 51  ALQCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRG 110
           AL CPHF SC+GC+H+  +  PI  +   +F ++   L+       L GWRCRAKLAVRG
Sbjct: 9   ALSCPHFDSCAGCSHQLFVEPPIWREVIENFKET---LNPILHQGTLTGWRCRAKLAVRG 65

Query: 111 TSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRY 170
           T  +P+IGL+++G+H  ++IP C  HHPRIN AV +++  ++   + PY E  + GDLRY
Sbjct: 66  TKQNPIIGLFKKGSHEALNIPFCLVHHPRINQAVTMIQNWMERHQLNPYQEHSQAGDLRY 125

Query: 171 VQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREH 230
           +Q  V          ER  +GKVQI  V N ++  SP S     L   L       +   
Sbjct: 126 LQFVV----------ER-ASGKVQIVFVLNFKDFSSPESQIWRKLLLEL----AQETTNA 170

Query: 231 YIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLR 290
           + HS+W NF     N IF ++W  + GE   WE+  G+ I   PS+F QAN   F+ LL+
Sbjct: 171 FWHSIWVNFNPHATNTIFTDKWEKVWGEPYLWESFDGVKICFQPSNFAQANLDLFEKLLK 230

Query: 291 KLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVD 350
           K++ +V   A V + +AG G IGLS+AA  KC  +KC EIN  S+  F     +L   + 
Sbjct: 231 KVKSWVREKAKVVEFFAGVGTIGLSVAA--KCSWIKCEEINPHSKECFYYAKQQLSSEIS 288

Query: 351 GNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSS 410
             I ++   ++ E L+ L G+D ++VDPPRKGL    +  L                   
Sbjct: 289 QKIMFYTG-SADENLNLLQGADTVIVDPPRKGLSRKFIEGL------------------- 328

Query: 411 MVKEEKRPWILRAKEASVQIGSKTNSENQSLPQTLIYISCGWESFKE 457
                                       QS    LIY+SCGW+SFK+
Sbjct: 329 ---------------------------TQSSVDQLIYVSCGWDSFKK 348


>sp|Q9KF10|Y687_BACHD Uncharacterized RNA methyltransferase BH0687 OS=Bacillus halodurans
           (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153
           / C-125) GN=BH0687 PE=3 SV=1
          Length = 458

 Score =  110 bits (274), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 156/351 (44%), Gaps = 40/351 (11%)

Query: 54  CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDF-----TFDSCRLYGWRCRAK 105
           CP F  C GC  +   ++        +  D  + IG +       T      + +R +A+
Sbjct: 78  CPVFNQCGGCQLQHMSYDAQLRYKQKQVQDVLERIGKITAVTVRPTIGMNEPWRYRNKAQ 137

Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRT 165
           + V       + G YQE +H ++D+  C   H   +  +  +++  +EL +  YDE+   
Sbjct: 138 VPVGEREGGLIAGFYQERSHRIIDMDECMIQHEENDKVIRQVKELARELGIRGYDEEKHR 197

Query: 166 GDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRNGG 224
           G LR+V               RY     +I +V  +R E+ P+   L E + + +     
Sbjct: 198 GTLRHV-------------VARYGKNTGEIMVVLITRGEELPHKKTLIERIHKAI----- 239

Query: 225 SRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRA 284
                 ++ S+  N      NVIFG++ + L GE   ++ +G I  +++  SF Q N   
Sbjct: 240 -----PHVKSIVQNVNPKRTNVIFGDKTKVLWGEEYIYDTIGDIKFAISARSFYQVNPEQ 294

Query: 285 FDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTV 342
             +L  +  ++     S  V D Y G G I L L  A++ + V  VEI  E+ +S  K  
Sbjct: 295 TKVLYDQALEFANLTGSETVIDAYCGIGTISLFL--AQQAKHVYGVEIVPEA-ISDAKRN 351

Query: 343 SRLPKSVDGNISWHNADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHAL 391
           +RL    +   +  +A+  + P  +  G  +DV+VVDPPRKG D +L+  +
Sbjct: 352 ARLNGFANVQFAVGDAE-KVMPWWYAQGVRADVIVVDPPRKGCDEALLKTI 401


>sp|Q74D67|Y1452_GEOSL Uncharacterized RNA methyltransferase GSU1452 OS=Geobacter
           sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA)
           GN=GSU1452 PE=3 SV=1
          Length = 495

 Score =  109 bits (273), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 167/359 (46%), Gaps = 44/359 (12%)

Query: 54  CPHFQSCSGCTHEFNLHRPIIVDEATDF-------FKSIGLLDF--TFDSCRLYGWRCRA 104
           C    SC GC     +H P  ++    F       ++++G  +   T  S     +R  A
Sbjct: 88  CKRAGSCDGCP-LIVMHYPDQLNWKRTFTERQIRRYQTLGAAEVLATLPSPNQLHYRNSA 146

Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
           KL V GT   P+IG+Y+  +H V+DI  C  HHP IN  V  +++GI +  V+ Y+    
Sbjct: 147 KLVVSGTFRRPVIGIYRRNSHQVMDIGTCPLHHPLINRVVTAVKEGIAKCKVQVYNPRTG 206

Query: 165 TGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGG 224
           +G LRY+ + ++            R G      V   R     N +++  LA+ L ++  
Sbjct: 207 SGLLRYLVVRISE-----------RTGTAMAVFVTVER-----NYNEIHHLAKHLQQSVP 250

Query: 225 SRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRA 284
                     V  N  +S  NVI G R   L  +    E +GGI  +++P SF Q N+  
Sbjct: 251 QVE------VVVQNVNSSEGNVILGQRDYFLTRQHALTEELGGIRFTISPRSFFQVNSGG 304

Query: 285 FDILLRKLQKY--VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTV 342
             I+   ++++  +    SV DLY G G I L LA     R V  +E+  E+ ++  ++ 
Sbjct: 305 ARIIYETVRQWSSLTGKESVVDLYCGIGGIALFLAGT--AREVHGIEV-VEAAVNDAESN 361

Query: 343 SRLPKSVDGNISWHNADNSIEPLSWLVGS----DVLVVDPPRKGLDSSLVHALQSIGSA 397
           +RL +    N S+   D + E +  LV      D++V++PPRKG D+ +++ + + G A
Sbjct: 362 ARLNRI--HNCSFEAGD-AAELIEELVEEGERLDLVVLNPPRKGCDAGVLNKVAAAGPA 417


>sp|Q97LN4|Y523_CLOAB Uncharacterized RNA methyltransferase CA_C0523 OS=Clostridium
           acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /
           LMG 5710 / VKM B-1787) GN=CA_C0523 PE=3 SV=1
          Length = 460

 Score =  108 bits (269), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 155/371 (41%), Gaps = 78/371 (21%)

Query: 54  CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRL--------- 97
           C  ++ C GC       T +    +    ++  +  K IG LD +  S R+         
Sbjct: 77  CSIYKKCGGCQLQHLKYTEQLEFKK----NKVVECLKRIGKLDLS--SVRINETIGMEDP 130

Query: 98  YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
           Y +R + +L V  T+    IG Y+E +H ++++  C       N  + L+++ IKE N+E
Sbjct: 131 YFYRNKVQLPVGETAGEAKIGFYRERSHEIIEVDKCFIQDDSANEIILLIKRWIKEFNIE 190

Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
            Y+E    G LR++ +            + ++ G++ + LV N+ N   P+  +L  +  
Sbjct: 191 GYNEYSGKGTLRHIMI-----------RKAFKTGQIMLVLVTNTEN--VPHKKELIHMI- 236

Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
                    +    I  +  N      NVI G R   L GE+   + +G    +++  SF
Sbjct: 237 --------TTEIQGIKGIIQNINNKKTNVILGQREITLWGESTIEDYIGEFKFNISSKSF 288

Query: 278 GQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
            Q N    + L     KY        V D Y G G I L L  ++  + V  VEI     
Sbjct: 289 FQVNPIQTEKLYSAALKYAGLTGKEVVFDAYCGTGTISLFL--SQNAKKVYGVEI----- 341

Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPPR 380
                    +P++++ N   +   N IE   ++VG                +V+VVDPPR
Sbjct: 342 ---------IPEAIE-NAKINAKQNGIENTEFIVGKSEEEIPKLIEKGIAPEVVVVDPPR 391

Query: 381 KGLDSSLVHAL 391
           KG + SL+H++
Sbjct: 392 KGCEKSLLHSI 402


>sp|Q837V0|Y728_ENTFA Uncharacterized RNA methyltransferase EF_0728 OS=Enterococcus
           faecalis (strain ATCC 700802 / V583) GN=EF_0728 PE=3
           SV=1
          Length = 457

 Score =  107 bits (266), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 146/310 (47%), Gaps = 58/310 (18%)

Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
           +R +A++ VR        G +++ +H+++ + H     P I+AA+  +R  +++ +V+PY
Sbjct: 130 YRNKAQIPVRKIDNQLQTGFFRKNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPY 189

Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEK-SPNS----DKLES 214
           +E D TG+LR++ +              Y  G++ + L+  +R  K  P S    D LE+
Sbjct: 190 NESDNTGNLRHIVV-----------RRGYHTGEMMVVLI--TRTPKLFPISKIVPDILEA 236

Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
           + E +              S+  N      NVIFG+    L G     + +  +   ++ 
Sbjct: 237 IPEVV--------------SIVQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISA 282

Query: 275 SSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
            SF Q N +  +++ +K+++Y     +  V D Y G G IGL+L  A+  + V  +E+ +
Sbjct: 283 RSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTL--AQDAKQVYGIEVIE 340

Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSI-------EPLSWLVGS----DVLVVDPPRK 381
           E+            K  + N   +N +N+        E L  LV +    DV+VVDPPRK
Sbjct: 341 EA-----------VKDAENNAKLNNIENATFTAGLAEELLPKLVENGLQPDVVVVDPPRK 389

Query: 382 GLDSSLVHAL 391
           GLD  LV+ L
Sbjct: 390 GLDGQLVNTL 399


>sp|Q891A0|Y2481_CLOTE Uncharacterized RNA methyltransferase CTC_02481 OS=Clostridium
           tetani (strain Massachusetts / E88) GN=CTC_02481 PE=3
           SV=1
          Length = 460

 Score =  105 bits (263), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 94/392 (23%), Positives = 162/392 (41%), Gaps = 85/392 (21%)

Query: 33  PSSLPLDPPAANLPSLTCALQCPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSI 85
           PS+  ++PP            C  +  C GC         + N  R     +  D    +
Sbjct: 68  PSANRVEPP------------CDIYTKCGGCQLQHMSYKEQLNFKR----QKVKDALLRL 111

Query: 86  GLLDFTFDSC----RLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRIN 141
           G +D   +        Y +R + +L +        IG Y   +HN++D+  C     + +
Sbjct: 112 GGIDVEVEEVLGMENPYRYRNKVQLPIGKEKGKVNIGFYAPRSHNIIDLKSCFIQDEKAD 171

Query: 142 AAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNS 201
             +++L++ I++ NV  YDE +  G+LR++ +              +R G++ I LV  +
Sbjct: 172 KIIKILKEWIEKFNVSIYDEKEHKGNLRHIMVRTA-----------FRTGQIMIVLV--T 218

Query: 202 RNEKSPNSDKL-ESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETD 260
           +++K P+ ++L   L E L            + S+  N  +   NV+ G     L G+  
Sbjct: 219 KDKKLPHKEELINKLTEDL----------EGVVSIIQNMNSQKTNVVLGKESIVLWGKDK 268

Query: 261 FWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAA 318
             + +G    ++ P SF Q N    ++L  K  +Y        V D Y G G I L L  
Sbjct: 269 IIDYIGNFKFAITPLSFFQVNPIQTEVLYNKALEYADLKGDEVVFDAYCGTGTISLFL-- 326

Query: 319 ARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVG-------- 370
           ++K + V  VEI           V+   +S   N   +N DN    + ++VG        
Sbjct: 327 SQKAKKVYGVEI-----------VNEAIESAKLNARENNVDN----VDFIVGESEQIIPE 371

Query: 371 -------SDVLVVDPPRKGLDSSLVHALQSIG 395
                  +DV+VVDPPRKG + SL+ A+  + 
Sbjct: 372 LIEKGIKADVVVVDPPRKGCEKSLLEAMAKMA 403


>sp|Q9KEF5|Y897_BACHD Uncharacterized RNA methyltransferase BH0897 OS=Bacillus halodurans
           (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153
           / C-125) GN=BH0897 PE=3 SV=1
          Length = 463

 Score =  105 bits (261), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 149/363 (41%), Gaps = 58/363 (15%)

Query: 54  CPHFQSCSGC------------------THEFNLHRPIIVDEATDFFKSIGLLDFTFDSC 95
           CP +  C GC                     F  H  +  D  T    +IG+ D      
Sbjct: 80  CPVYDQCGGCQLQHLSYEATLKEKREIVKQAFERHTTLRADTLT-ILPTIGMED------ 132

Query: 96  RLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELN 155
             + +R +++L ++        GLY   TH +VD+  C   H   N A E+++Q +++L 
Sbjct: 133 -PWAYRNKSQLQLKTEKGQVKAGLYVMNTHKLVDLSSCLVQHDATNEASEVVKQIVQDLQ 191

Query: 156 VEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESL 215
           +  Y+E  RTG LR V   V            +  G++Q+ LV   ++   P  D L  +
Sbjct: 192 IPTYNERKRTGILRSVVSRVG-----------FETGELQVILVTTKKD--FPKKDLL--V 236

Query: 216 AEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPS 275
            E        +SR  ++ S+  N      ++I G+    L GE    E +G I  SL+  
Sbjct: 237 EEI-------KSRLPHVKSLQQNINPKKTSLIMGDETISLFGEETIEETLGDISFSLSAR 289

Query: 276 SFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
           +F Q N +    L  ++++         V D Y G G IGL LA   + R V+ +++  E
Sbjct: 290 AFFQLNPKQTVKLYNEVKRAAALTGKEKVIDAYCGVGTIGLWLAD--QAREVRGMDVIAE 347

Query: 334 SQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHA 390
              + E       +    N+ +          SW+  S   DV+VVDPPR G D  L+  
Sbjct: 348 ---AIEDAKENAKRQGITNVQYEVGKAEKIIPSWVRSSWIPDVIVVDPPRTGCDDQLLKT 404

Query: 391 LQS 393
           ++ 
Sbjct: 405 IKQ 407


>sp|Q73E18|Y542_BACC1 Uncharacterized RNA methyltransferase BCE_0542 OS=Bacillus cereus
           (strain ATCC 10987) GN=BCE_0542 PE=3 SV=1
          Length = 459

 Score =  104 bits (259), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 159/358 (44%), Gaps = 47/358 (13%)

Query: 54  CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRL---YGWRCR 103
           CP ++ C GC         + N  R I+V +A   + + GL +    +  +   + +R +
Sbjct: 80  CPVYEECGGCQLQHLDYKEQLNQKRDIVV-QAFQKYMNNGLEEKIRPTLGMENPWHYRNK 138

Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
           ++L V       + GLY++ +H ++DI HC   H   N A +++R+ +++LNV  Y+E  
Sbjct: 139 SQLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKK 198

Query: 164 RTGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
           + G +R +  + AV T             G+VQ+TL+  +  E+ PN ++   +AE    
Sbjct: 199 QKGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--IAEV--- 238

Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
               + +   + S+  N      +VIFG++   L G+    E +G +   L+  +F Q N
Sbjct: 239 ----QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLN 294

Query: 282 TRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
                +L  + +K      +  + D Y G G IGL L  A     V+ +++  E+     
Sbjct: 295 PEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIADAR 352

Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
           K   R   +   N  +           W+      DV+VVDPPR G D  L+  +  +
Sbjct: 353 KNAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407


>sp|Q81Z48|Y426_BACAN Uncharacterized RNA methyltransferase BA_0426/GBAA_0426/BAS0414
           OS=Bacillus anthracis GN=BA_0426 PE=3 SV=1
          Length = 459

 Score =  103 bits (258), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 154/357 (43%), Gaps = 45/357 (12%)

Query: 54  CPHFQSCSGC-------THEFNLHRPIIVDEATDFFKSIGLLDF--TFDSCRLYGWRCRA 104
           CP ++ C GC         + N  R I+V     + K+        T      + +R ++
Sbjct: 80  CPVYEECGGCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKS 139

Query: 105 KLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
           +L V       + GLY++ +H ++DI HC   H   N A +++R+ +++LNV  Y+E  +
Sbjct: 140 QLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQ 199

Query: 165 TGDLRYV--QMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
            G +R +  + AV T             G+VQ+TL+  +  E+ PN ++   +AE     
Sbjct: 200 KGLVRTIVTRTAVQT-------------GEVQVTLI--TTKEELPNKEQF--IAEV---- 238

Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
              + +   + S+  N      +VIFG++   L G+    E +G +   L+  +F Q N 
Sbjct: 239 ---QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELSARAFFQLNP 295

Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
               +L  + +K      +  + D Y G G IGL L  A     V+ +++  E+     K
Sbjct: 296 EQTVVLYNEAKKAAALTGNEKIVDAYCGVGTIGLWL--ANDAAEVRGMDVIPEAIADARK 353

Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSSLVHALQSI 394
              R   +   N  +           W+      DV+VVDPPR G D  L+  +  +
Sbjct: 354 NAKRHGFT---NTKYEAGKAEQWLPKWVKEGWRPDVIVVDPPRTGCDDKLLETILKV 407


>sp|O31503|RLMCD_BACSU 23S rRNA (uracil-C(5))-methyltransferase RlmCD OS=Bacillus subtilis
           (strain 168) GN=rlmCD PE=1 SV=1
          Length = 459

 Score =  102 bits (255), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 155/355 (43%), Gaps = 46/355 (12%)

Query: 54  CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDF-------TFDSCRLYGWRCR 103
           CP ++ C GC  +   +   ++    +  D  + IG LD        T      + +R +
Sbjct: 77  CPIYKQCGGCQLQHMTYEGQLLFKQKQVKDVLERIGKLDLSKVTVHPTLGMEDPWNYRNK 136

Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
           A++ V       + G YQ+ +H+++D+  C     + + AV+ ++       V+ Y+E+ 
Sbjct: 137 AQVPVGEREGGLVAGFYQQRSHDIIDMSACLIQQSKNDEAVQAVKDICANYGVKAYNEER 196

Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL--ESLAEFLWR 221
             G LR++ +             RY     ++ +V+ +R    P+  K+  +  A+F   
Sbjct: 197 HKGWLRHIMV-------------RYGVVTGEMMIVFITRTSDFPHKAKIIEDITAQF--- 240

Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
                    ++ S+  N   +  NVIFGN    + GE   ++ +G +  +++  SF Q N
Sbjct: 241 --------PHVKSIVQNINPNKTNVIFGNETNVIWGEEYIYDLIGDVKFAISARSFYQVN 292

Query: 282 TRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339
                +L  K  +Y       +V D Y G G I L L  A++ + V  VEI  E+ +   
Sbjct: 293 PEQTKVLYDKALEYAELQGEETVIDAYCGIGTISLFL--AKQAKKVYGVEIVPEA-IEDA 349

Query: 340 KTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
           K  + L  + +   +   A+  I    W    + +D LVVDPPRKG D +L+  +
Sbjct: 350 KRNAELNGNTNAEFAVGEAETVIP--KWYEEGITADTLVVDPPRKGCDEALLRTI 402


>sp|Q8XNG6|Y367_CLOPE Uncharacterized RNA methyltransferase CPE0367 OS=Clostridium
           perfringens (strain 13 / Type A) GN=CPE0367 PE=3 SV=1
          Length = 455

 Score =  101 bits (252), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 161/374 (43%), Gaps = 69/374 (18%)

Query: 54  CPHFQSCSGCTHEFNLHRPIIV---DEATDFFKSIGLLDFTFDSCRL-----YGWRCRAK 105
           C  ++ C GC  +   ++  +    D   D    IG LD +     L     + +R + +
Sbjct: 73  CAIYKRCGGCKLQHASYKAQLDFKWDRVKDCVSKIGKLDPSIVKYPLGMENPWRYRNKVQ 132

Query: 106 LAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED--- 162
           L +   +    IG +   +H+++D+  C       +  V+L R+ I++ N+ PY+ D   
Sbjct: 133 LPIGLINGEVKIGFFAPRSHDIIDMESCLIQDEIGDKVVKLTREWIEKFNIRPYNVDGEY 192

Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
           D  G +R++ +              +   +V + LV N   EK P+    E   + + +N
Sbjct: 193 DEKGIVRHIMI-----------RRGFTTNEVMVVLVTNG--EKLPHK---EEFVDLMVKN 236

Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
                    I SV  N  +   NVI G   + L GE    + +G    +++P SF Q N 
Sbjct: 237 IPG------IKSVIQNINSKKTNVILGLESKTLWGEDTISDYIGDFRFNISPLSFFQVNP 290

Query: 283 RAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
              ++L  K  +Y     +  V D Y G G I L L  ++K + V  VEI          
Sbjct: 291 IQTEVLYGKALEYANLTGNEEVFDAYCGTGTITLFL--SQKAKKVYGVEI---------- 338

Query: 341 TVSRLPKSVDGNISWHNA-DNSIEPLSWLVG---------------SDVLVVDPPRKGLD 384
               +P+++D   +W NA +N +E + + VG               +DV+VVDPPRKG D
Sbjct: 339 ----IPQAIDN--AWINAKENKVENVEFFVGESEVVIPDLINKGVKADVVVVDPPRKGCD 392

Query: 385 SSLVHALQSIGSAE 398
             L+ A+ +I + +
Sbjct: 393 KKLLDAITNIDAKK 406


>sp|O31545|YFJO_BACSU Uncharacterized RNA methyltransferase YfjO OS=Bacillus subtilis
           (strain 168) GN=yfjO PE=3 SV=1
          Length = 466

 Score =  101 bits (252), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 156/369 (42%), Gaps = 67/369 (18%)

Query: 54  CPHFQSCSGC-------THEFNLHRPIIV---DEATDFFKSIGLLDFTFDSCRLYGWRCR 103
           CP ++ C GC       + +    R I++   +  T F      +  T      + +R +
Sbjct: 82  CPVYEQCGGCQLQHLAYSQQLREKRDIVIQSLERHTKFKVENMEIKETIGMDNPWNYRNK 141

Query: 104 AKLAV-RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
           ++  + R  S S + GLY   +H++V I  C   HP  N    ++R+ +++ NV  Y+E 
Sbjct: 142 SQFQIGRSQSGSIIAGLYGLDSHDIVPIKDCIVQHPATNKTTGIVRRILEDFNVSVYNER 201

Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRN 222
            R GD+R +   V            +  G+VQ+ LV  +  E  P+ +++    +     
Sbjct: 202 KRKGDVRTIVTRVG-----------FETGEVQVVLV--TAKETLPHKEEIVKAIQ----- 243

Query: 223 GGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANT 282
                R   + S+  N   +  +VIFG + + L G+T   E +G +   L+  +F Q N 
Sbjct: 244 ----KRLPEVKSIIQNVNGAKTSVIFGEKTKQLAGKTVIQEVLGDVSFELSARAFFQLNP 299

Query: 283 RAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
                L  +++K         V D Y G G IG+ +A   K   V+ +++ KES    +K
Sbjct: 300 EQTVKLYDEVKKAAQLTGKEKVVDAYCGVGTIGMWVADGAK--EVRGMDVIKESIDDAKK 357

Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLVVDPPRKGLDS 385
                      N   H   N+    +++ G+               DV++VDPPR G DS
Sbjct: 358 -----------NAKKHGMANA----TYVTGTAEHWLPKWTKEGFRPDVVIVDPPRTGCDS 402

Query: 386 SLVHALQSI 394
           + +  ++ +
Sbjct: 403 TFLDTIKKV 411


>sp|Q92AQ7|Y1863_LISIN Uncharacterized RNA methyltransferase lin1863 OS=Listeria innocua
           serovar 6a (strain CLIP 11262) GN=lin1863 PE=3 SV=1
          Length = 453

 Score =  100 bits (248), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 163/377 (43%), Gaps = 52/377 (13%)

Query: 54  CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDFTF-DSCRLYG-WRCRAKLAV 108
           C  +  C GC+ +   ++       ++  +  K IG L+    D+  +   WR R K  V
Sbjct: 76  CAVYSKCGGCSLQHLSYDGQLAFKRNQVEETMKRIGKLNVEVPDTLGMENPWRYRNKSQV 135

Query: 109 -RGTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTG 166
             G     L  G YQ+ +H+++D+  C  H+ + + AV+  R+ + +   EPYDE    G
Sbjct: 136 PVGFVNGKLTAGFYQKRSHDIIDMSTCLIHNEKGDVAVQKTREILAKYGTEPYDEKTGKG 195

Query: 167 DLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSR 226
           D+R++               R+ +   Q+ +V  +  E+ P   K E + +         
Sbjct: 196 DIRHIMT-------------RFAHTTGQLMIVLVTTKERLPF--KAEIIQDL-------- 232

Query: 227 SREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFD 286
           + +  + S+  N      NVIFG+R + L G     + + GI  +++  SF Q N    +
Sbjct: 233 TNQLEVTSIVQNINPQKTNVIFGDRTKTLWGSDIIEDTIHGIRFAISARSFYQVNPLQTE 292

Query: 287 ILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR 344
           +L ++           +V D Y G G I L L  A+K + V  VEI  ++ +   +  + 
Sbjct: 293 VLYQQAIDSAELTGEETVIDAYCGIGSISLCL--AKKAKHVYGVEIVDQA-IQDARANAE 349

Query: 345 LPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI------- 394
           L    +       A+  I    W    + +DVLVVDPPRKG D +L+  + ++       
Sbjct: 350 LNNLTNTTFETGKAEEVIP--QWYKNGIVADVLVVDPPRKGCDETLLETILAMKPKKVVY 407

Query: 395 -----GSAERKAKSLSE 406
                G+  R  K L+E
Sbjct: 408 VSCNPGTLARDMKILTE 424


>sp|Q8Y6D6|Y1751_LISMO Uncharacterized RNA methyltransferase lmo1751 OS=Listeria
           monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
           GN=lmo1751 PE=3 SV=1
          Length = 453

 Score = 99.8 bits (247), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 157/354 (44%), Gaps = 42/354 (11%)

Query: 54  CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKL 106
           C  +  C GC+ +   ++       ++  +  K IG L+     T      + +R ++++
Sbjct: 76  CAVYSKCGGCSLQHLSYDGQLEFKRNQVEETMKRIGKLNVEVPETLGMENPWRYRNKSQV 135

Query: 107 AVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTG 166
            V   +     G YQ+ +H ++D+  C  H+ + + AV+  R+ + +   EPYDE    G
Sbjct: 136 PVGFVNGKLTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDEQTGKG 195

Query: 167 DLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRNGGS 225
           D+R++               R+ +   Q+ +V  +  E+ P  +++   L E L      
Sbjct: 196 DIRHIMT-------------RFAHTTGQLMIVLVTTKERMPFKEEIVRDLVEQLE----- 237

Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
                 + S+  N      NVIFG+R + L G+    + + GI  +++  SF Q N    
Sbjct: 238 ------LTSIVQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPLQT 291

Query: 286 DILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
           ++L ++           +V D Y G G I L L  A+K + V  VEI  ++ +   +  +
Sbjct: 292 EVLYQQAIDAAELTGEETVIDAYCGIGSISLCL--AKKAKHVYGVEIVDQA-IQDARANA 348

Query: 344 RLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
            L +  +       A+  I   SW    + +DVLVVDPPRKG D  L+  + ++
Sbjct: 349 ELNELANTTFETGKAEEVIP--SWYKAGIVADVLVVDPPRKGCDEKLLETILAM 400


>sp|Q71YR7|Y1776_LISMF Uncharacterized RNA methyltransferase LMOf2365_1776 OS=Listeria
           monocytogenes serotype 4b (strain F2365)
           GN=LMOf2365_1776 PE=3 SV=1
          Length = 453

 Score = 99.4 bits (246), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 157/353 (44%), Gaps = 40/353 (11%)

Query: 54  CPHFQSCSGCTHE---FNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWRCRAKL 106
           C  +  C GC+ +   ++       ++  +  K IG L+     T      + +R ++++
Sbjct: 76  CAVYSKCGGCSLQHLSYDGQLEFKRNQVEETMKRIGKLNVEVPETLGMENPWRYRNKSQV 135

Query: 107 AVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTG 166
            V   +     G YQ+ +H ++D+  C  H+ + + AV+  R+ + +   EPYDE    G
Sbjct: 136 PVGFVNGKLTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDEQTGKG 195

Query: 167 DLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWRNGGS 225
           D+R++               R+ +   Q+ +V  +  E+ P  +++   L E L      
Sbjct: 196 DIRHIMT-------------RFAHTTGQLMIVLVTTKERMPFKEEIVRELVEQLE----- 237

Query: 226 RSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAF 285
                 + S+  N      NVIFG+R + L G+    + + GI  +++  SF Q N    
Sbjct: 238 ------LTSIVQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPIQT 291

Query: 286 DILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343
           ++L ++           +V D Y G G I L L  A+K + V  VEI  ++ +   +  +
Sbjct: 292 EVLYQQAIDAAELTGEETVIDAYCGIGSISLCL--AKKAKHVYGVEIVDQA-IQDARANA 348

Query: 344 RLPKSVDGNISWHNADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHALQSI 394
            L +  +       A+  I P  +  G  +DVLVVDPPRKG D  L+  + ++
Sbjct: 349 ELNELANTTFETGKAEEVI-PAWYKAGIVADVLVVDPPRKGCDEKLLETILAM 400


>sp|Q97R12|Y1029_STRPN Uncharacterized RNA methyltransferase SP_1029 OS=Streptococcus
           pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
           GN=SP_1029 PE=3 SV=1
          Length = 543

 Score = 98.2 bits (243), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 139/302 (46%), Gaps = 32/302 (10%)

Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
           +R +A++ VR  +     G +++ +HN++ +       P I+  V  LR  ++  +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPY 185

Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
           DE +++G +R           +L     + +G++ + LV        P   +++ L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVVLVTTR-----PKVFRVDQLIEQV 229

Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
            +          I SV  N      N IFG  WR L G+    + + G D  +A  +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQ 283

Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
            NT   + L +    +        + D Y+G G IGLS+  A+  + V  VE+  E+  +
Sbjct: 284 VNTEMAEKLYQTAIDFAELKKDDVIIDAYSGIGTIGLSV--AKHVKEVYGVELIPEAVEN 341

Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
            +K  S L K  + +     A+N+++   WL   +   V++VDPPRKGL  S + A    
Sbjct: 342 SQKNAS-LNKITNAHYVCDTAENAMK--KWLKEGIQPTVILVDPPRKGLTESFIKASAQT 398

Query: 395 GS 396
           G+
Sbjct: 399 GA 400


>sp|Q814A6|Y364_BACCR Uncharacterized RNA methyltransferase BC_0364 OS=Bacillus cereus
           (strain ATCC 14579 / DSM 31) GN=BC_0364 PE=3 SV=1
          Length = 458

 Score = 95.5 bits (236), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 154/353 (43%), Gaps = 42/353 (11%)

Query: 53  QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIG-LLDF----TFDSCRLYGWRC 102
           +CP +  C GC     T+E  L       +  D  + IG L D            + +R 
Sbjct: 78  ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLADVPVHPVLGMKNPWVYRN 135

Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
           +A++ +       + G Y++GTH+++++  C       +  ++ +++  ++  +  Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEE 195

Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
              G LR+V MA            RY     +I LV+ +R  + PN   + E +A     
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237

Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
                ++   + S+  N  T   NVIFG++   L G    ++ +G I  +++  SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292

Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
                +L  K  +Y     + T + A  G+  +SL  A+K + V  VEI  E+     + 
Sbjct: 293 PEQTKVLYDKTLEYAKLNGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRN 352

Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
            + L    +       A+  I    W    V +D +VVDPPRKG D +L++ +
Sbjct: 353 AA-LNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402


>sp|Q8DPY7|Y932_STRR6 Uncharacterized RNA methyltransferase spr0932 OS=Streptococcus
           pneumoniae (strain ATCC BAA-255 / R6) GN=spr0932 PE=3
           SV=1
          Length = 543

 Score = 94.7 bits (234), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 139/302 (46%), Gaps = 32/302 (10%)

Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
           +R +A++ VR  +     G +++ +HN++ +       P I+  V  LR  ++  +++PY
Sbjct: 126 YRNKAQVPVRRVNGVLETGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPY 185

Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
           DE +++G +R           +L     + +G++ + LV        P   +++ L E +
Sbjct: 186 DEKEQSGLIR-----------NLVVRRGHYSGQIMVVLVTTR-----PKVFRVDQLIEQV 229

Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
            +          I SV  N      N IFG  WR L G+    + + G D  +A  +F Q
Sbjct: 230 IKQFPE------IVSVMQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGLAFYQ 283

Query: 280 ANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
            NT   + L +    +        V D Y+G G IGLS+  A+  + V  VE+  E+ + 
Sbjct: 284 VNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGLSV--AKHVKEVYGVELIPEA-VE 340

Query: 338 FEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHALQSI 394
             K  ++L    + +     A+N+++  +WL   +   V++VDPPRKGL  S + A    
Sbjct: 341 NSKKNAQLNNISNAHYVCDTAENAMK--NWLKDGIQPTVILVDPPRKGLTESFIKASAQT 398

Query: 395 GS 396
           G+
Sbjct: 399 GA 400


>sp|Q830R6|Y2706_ENTFA Uncharacterized RNA methyltransferase EF_2706 OS=Enterococcus
           faecalis (strain ATCC 700802 / V583) GN=EF_2706 PE=3
           SV=1
          Length = 456

 Score = 94.4 bits (233), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 148/361 (40%), Gaps = 58/361 (16%)

Query: 54  CPHFQSCSGCTHEFNLHRPII------VDEATDFFKSIGLLDF----TFDSCRLYGWRCR 103
           CP +++C GC  +   ++  +      + +A + FK     ++    T      + +R +
Sbjct: 76  CPVYETCGGCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMDNPWNYRNK 135

Query: 104 AKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDD 163
           A+  +R        GLYQ  +H +V I +C    P     +  L   + +  +  YDE  
Sbjct: 136 AQFQLRQIDGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERK 195

Query: 164 RTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-----ESLAEF 218
            +G  R + + V             + G+VQ+  +  ++++K P  +K+     E L E 
Sbjct: 196 NSGIFRTLMVRVGI-----------QTGEVQVVFI--TQSQKFPQKEKMVRAINEQLPEV 242

Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
           +              S+  N Q    +++ G+   HL G+    E++  +   L+P +F 
Sbjct: 243 V--------------SIMQNVQNKKTSLVMGDDTLHLWGKESIEEHINDVVFDLSPRAFF 288

Query: 279 QANTRAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAA-ARKCRSVKCVEINKESQ 335
           Q N    ++L  +  K +      +V D Y G G IGLSLA  A + R +  +    +  
Sbjct: 289 QLNPEQTEVLYNEGIKALDLQPNETVVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDD- 347

Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWL---VGSDVLVVDPPRKGLDSSLVHA 390
                  +R      G  + H A  + E L   W       D +VVDPPR GLD  L+ A
Sbjct: 348 -------ARFNAKRLGVTNTHYAVGTAEDLLPKWFKEGFKPDAIVVDPPRTGLDRKLLTA 400

Query: 391 L 391
           L
Sbjct: 401 L 401


>sp|Q73EJ5|Y363_BACC1 Uncharacterized RNA methyltransferase BCE_0363 OS=Bacillus cereus
           (strain ATCC 10987) GN=BCE_0363 PE=3 SV=1
          Length = 460

 Score = 94.0 bits (232), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)

Query: 53  QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
           +CP +  C GC     T+E  L       +  D  + IG L              + +R 
Sbjct: 78  ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRN 135

Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
           +A++ +       + G Y++GTH+++++  C       +  ++ +++  ++  +  Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEE 195

Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
              G LR+V MA            RY     +I LV+ +R  + PN   + E +A     
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237

Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
                ++   + S+  N      NVIFG++   L G    ++ +G I  +++  SF Q N
Sbjct: 238 -----TKFPEVKSIVQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292

Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
                +L  K  +Y     + T + A  G+  +SL  A+K + V  VEI  E+ +   K 
Sbjct: 293 PEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEA-IEDAKR 351

Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
            + L    +       A+  I    W    V +D +VVDPPRKG D +L++ +
Sbjct: 352 NAALNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402


>sp|Q81ZD6|Y333_BACAN Uncharacterized RNA methyltransferase BA_0333/GBAA_0333/BAS0318
           OS=Bacillus anthracis GN=BA_0333 PE=3 SV=1
          Length = 458

 Score = 93.2 bits (230), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 42/353 (11%)

Query: 53  QCPHFQSCSGC-----THEFNLHRPIIVDEATDFFKSIGLLDFT-----FDSCRLYGWRC 102
           +CP +  C GC     T+E  L       +  D  + IG L              + +R 
Sbjct: 78  ECPVYNQCGGCQLQHLTYEGQLQAK--EKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRN 135

Query: 103 RAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDED 162
           +A++ +       + G Y++GTH+++++  C       +  ++ +++  ++  +  Y+E+
Sbjct: 136 KAQVPIGEREGGLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEE 195

Query: 163 DRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEFLWR 221
              G LR+V MA            RY     +I LV+ +R  + PN   + E +A     
Sbjct: 196 RNKGTLRHV-MA------------RYGQVTGEIMLVFITRTAELPNKKAIIEEIA----- 237

Query: 222 NGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQAN 281
                ++   + S+  N      NVIFG++   L G    ++ +G I  +++  SF Q N
Sbjct: 238 -----AKFPEVKSIVQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVN 292

Query: 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341
                +L  K  +Y     + T + A  G+  +SL  A+K + V  VEI  E+ +   K 
Sbjct: 293 PEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEA-IEDAKR 351

Query: 342 VSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDSSLVHAL 391
            + L    +       A+  I    W    V +D +VVDPPRKG D +L++ +
Sbjct: 352 NAALNNMTNAEFGVGEAEVVIP--KWYKEGVIADTMVVDPPRKGCDEALLNTI 402


>sp|Q8E0T7|Y633_STRA5 Uncharacterized RNA methyltransferase SAG0633 OS=Streptococcus
           agalactiae serotype V (strain ATCC BAA-611 / 2603 V/R)
           GN=SAG0633 PE=3 SV=1
          Length = 451

 Score = 92.8 bits (229), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 153/330 (46%), Gaps = 48/330 (14%)

Query: 99  GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
            +R +A++ VR        G +++ +H +V I         I+A +   R  +++ +V+P
Sbjct: 125 AYRNKAQVPVRRVDGQLETGFFRKNSHTLVSIEDYLIQEKEIDALINFTRDLLRKFDVKP 184

Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
           YDE+ ++G +R           +L     +  G++ + LV        P   +++ + E 
Sbjct: 185 YDEEQQSGLIR-----------NLVVRRGHYTGQLMLVLVTTR-----PKIFRIDQMIEK 228

Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
           L     S      + S+  N     +NVIFG  +R L G     + + G   +++  SF 
Sbjct: 229 LVSAFPS------VVSIMQNINDRNSNVIFGKEFRTLYGSDTIEDQMLGNTYAISAQSFY 282

Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
           Q NT   + L +K   +    +   V D Y+G G IGLS+  A++ + V  VE+      
Sbjct: 283 QVNTEMAEKLYQKAIDFSDLNSEDIVIDAYSGIGTIGLSV--AKQVKHVYGVEV------ 334

Query: 337 SFEKTVSRLPKSVDGN---ISWHNADNSIEPLS-WL---VGSDVLVVDPPRKGLDSSLVH 389
             EK VS   ++   N    S + AD++   ++ WL   +   V++VDPPRKGL  S V+
Sbjct: 335 -VEKAVSDAKENATRNGITNSTYVADSAENAMAKWLKEGIKPTVIMVDPPRKGLTESFVY 393

Query: 390 ALQSIGSAERKAKSLSE---SSSSMVKEEK 416
           +     +A+ KA  ++    +S++M ++ K
Sbjct: 394 S-----AAQTKADKITYISCNSATMARDIK 418


>sp|Q8E6F5|Y613_STRA3 Uncharacterized RNA methyltransferase gbs0613 OS=Streptococcus
           agalactiae serotype III (strain NEM316) GN=gbs0613 PE=3
           SV=1
          Length = 451

 Score = 92.8 bits (229), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 153/330 (46%), Gaps = 48/330 (14%)

Query: 99  GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
            +R +A++ VR        G +++ +H +V I         I+A +   R  +++ +V+P
Sbjct: 125 AYRNKAQVPVRRVDGQLETGFFRKNSHTLVSIEDYLIQEKEIDALINFTRDLLRKFDVKP 184

Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
           YDE+ ++G +R           +L     +  G++ + LV        P   +++ + E 
Sbjct: 185 YDEEQQSGLIR-----------NLVVRRGHYTGQLMLVLVTTR-----PKIFRIDQMIEK 228

Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
           L     S      + S+  N     +NVIFG  +R L G     + + G   +++  SF 
Sbjct: 229 LVSAFPS------VVSIMQNINDRNSNVIFGKEFRTLYGSDTIEDQMLGNTYAISAQSFY 282

Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
           Q NT   + L +K   +    +   V D Y+G G IGLS+  A++ + V  VE+      
Sbjct: 283 QVNTEMAEKLYQKAIDFSDLNSEDIVIDAYSGIGTIGLSV--AKQVKHVYGVEV------ 334

Query: 337 SFEKTVSRLPKSVDGN---ISWHNADNSIEPLS-WL---VGSDVLVVDPPRKGLDSSLVH 389
             EK VS   ++   N    S + AD++   ++ WL   +   V++VDPPRKGL  S V+
Sbjct: 335 -VEKAVSDAKENATRNGITNSTYVADSAENAMAKWLKEGIKPTVIMVDPPRKGLTESFVY 393

Query: 390 ALQSIGSAERKAKSLSE---SSSSMVKEEK 416
           +     +A+ KA  ++    +S++M ++ K
Sbjct: 394 S-----AAQTKADKITYISCNSATMARDIK 418


>sp|Q88SY9|Y3226_LACPL Uncharacterized RNA methyltransferase lp_3226 OS=Lactobacillus
           plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1)
           GN=lp_3226 PE=3 SV=1
          Length = 481

 Score = 91.3 bits (225), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 148/328 (45%), Gaps = 46/328 (14%)

Query: 98  YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGI---KEL 154
           Y +R +A+  VR        GLY+E +H++VD+P C    P   A + ++RQ +   +EL
Sbjct: 154 YEYRNKAQFQVRLIDGHVAAGLYKENSHDLVDLPTCSVQMP---ATMTVMRQVVAWLEEL 210

Query: 155 NVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDK-LE 213
            V  YDE+  +G ++           ++   E    G++Q+  + N+   K P   + L 
Sbjct: 211 QVPIYDEEHNSGIVK-----------TIVVREAAATGEIQLVFITNT--PKLPKKHQLLM 257

Query: 214 SLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLA 273
            +AE L            + SV  N      ++I+G++   L G+    E + G+   L+
Sbjct: 258 KIAEKL----------PMVVSVMQNINAGKTSLIWGDQTTLLAGKPTITEELDGLVFDLS 307

Query: 274 PSSFGQAN---TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLA-AARKCRSVKCVE 329
             +F Q N   T+    L R+     P   ++ D Y+G G IGLSLA  A++ R +  + 
Sbjct: 308 ARAFFQLNPQQTKKLYRLAREALNLAP-NETLVDAYSGVGTIGLSLADVAKEVRGMDTIP 366

Query: 330 INKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---DVLVVDPPRKGLDSS 386
                  +  +      ++   N  +   +  +    WL      D +VVDPPR GLD+ 
Sbjct: 367 AAVADANANAQ------RNQITNAHYEVGEAEVLLPQWLASGFAPDAMVVDPPRTGLDNV 420

Query: 387 LVHALQSIGSAERKAKSLSESSSSMVKE 414
           L+ A+  + SA  K   +S + S++ ++
Sbjct: 421 LIDAI--LQSAPEKLVYISCNPSTLAQD 446


>sp|Q7VBX7|Y965_PROMA Uncharacterized RNA methyltransferase Pro_0965 OS=Prochlorococcus
           marinus (strain SARG / CCMP1375 / SS120) GN=Pro_0965
           PE=3 SV=1
          Length = 419

 Score = 91.3 bits (225), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 159/360 (44%), Gaps = 51/360 (14%)

Query: 53  QCPHFQSCSGCT-------HEFNLHRPIIVDEATDFFKSIGLLDF----TFDSCRLYGWR 101
           +C  +  C GC+       ++F + + ++++  +   K   L DF    +    + + +R
Sbjct: 37  KCSFYSDCGGCSMQEIEPHYQFAIKKKLLINALSRIGK---LNDFPEPISITPSQFFHYR 93

Query: 102 CRAKLAVRGTST-SPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYD 160
            ++   V   S  + +IG YQ  +H +VDI +C     +IN A+  +R  +K+ ++    
Sbjct: 94  NKSTFPVYNESYGNTIIGYYQRNSHKIVDIDNCPVLDHKINKALSDIRLILKDNHINADH 153

Query: 161 EDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEK--SPNSDKLESLAEF 218
           +  R G LR++ +  +  NT+          +V IT V N   +K   P ++KL      
Sbjct: 154 DIRRKGGLRHISIR-SGINTN----------EVLITFVSNFSIKKLLFPITNKL------ 196

Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
                GS S    +  +  N Q   NN IFG     L G    ++    +DI +  +SF 
Sbjct: 197 ----NGSESN---VVGILNNIQPKPNNKIFGATTEILTGRDYIYDKFCHMDILIGSTSFF 249

Query: 279 QANT----RAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
           Q N     +A +  +R +         + D Y+G G + + LA+      V  +EIN E+
Sbjct: 250 QVNLVEAEKAIN-CIRNIISNTNKIVRIIDAYSGIGTMSIPLAS--DGYRVIGIEINNEA 306

Query: 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSI 394
               E  +     +    I++ N D +      L+ +D L++DPPRKGLD SL+  +  +
Sbjct: 307 H---EIAIRNAEINNIKTITFENQDVTKYLPKILLPNDFLILDPPRKGLDPSLIDVITKL 363


>sp|Q8ES75|Y768_OCEIH Uncharacterized RNA methyltransferase OB0768 OS=Oceanobacillus
           iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 /
           HTE831) GN=OB0768 PE=3 SV=1
          Length = 459

 Score = 90.9 bits (224), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 132/308 (42%), Gaps = 53/308 (17%)

Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVV-DIPHCKAHHPRINAAVELLRQGIKELNVEP 158
           +R + ++ V   +   ++G YQ+ +H ++ +   C      IN  +   RQ + +  ++ 
Sbjct: 130 YRNKVQIPVGEKNGEVIVGFYQKRSHRILQNQDTCHIQDEAINEVLPFTRQLMNKYGIQA 189

Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAE 217
           YDE    G LR++ + V  Y                I +V+ ++  K P  D++ + L E
Sbjct: 190 YDEKSHRGQLRHIMVRVGHYTKD-------------IMIVFVTKTSKFPEKDRIIKELTE 236

Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
              +          + S+  N      NV+ G + + L GE   ++ +G +  +++P SF
Sbjct: 237 QFPQ----------VKSIVQNVNDQRTNVVLGKKTKVLWGENYIYDKIGDLTFAISPKSF 286

Query: 278 GQANTRAFDILLRKLQKY--VPYGASVTDLYAGAGVIGLSLA-AARKCRSVKCV------ 328
            Q N     +L  K  +Y  +     V D Y G G I L LA  A+K   ++ V      
Sbjct: 287 FQVNPVQTKVLYDKALEYANIDKDDVVIDAYCGIGSISLFLAQKAKKVYGIEVVPEAIED 346

Query: 329 -----EINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGL 383
                EIN  + + F  +V +  K +     W   +  ++P       DV+VVDPPRKG 
Sbjct: 347 AKMNAEINGMNNVEF--SVGQAEKVMP---KW--KEQGLDP-------DVIVVDPPRKGC 392

Query: 384 DSSLVHAL 391
           D   + A+
Sbjct: 393 DVDFLEAM 400


>sp|Q8DKB7|Y942_THEEB Uncharacterized RNA methyltransferase tlr0942
           OS=Thermosynechococcus elongatus (strain BP-1)
           GN=tlr0942 PE=3 SV=1
          Length = 449

 Score = 89.4 bits (220), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 131/300 (43%), Gaps = 39/300 (13%)

Query: 98  YGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
           +G+R +    +     + + G YQ+G+H++V++  C    PR+N  +  L+Q ++   + 
Sbjct: 126 FGYRNKVTYPLGRRHGAVVAGYYQKGSHHLVNLNQCPVQDPRLNPLLAALKQALQPWPI- 184

Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
            Y E       R++ + +             R G+  ITLV        P    L + AE
Sbjct: 185 -YREQTHEPGFRHLGLRIGQ-----------RTGEQLITLVL-----AGPLPAGLAAEAE 227

Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
                 G   R   +  V  NF     N IFG+  + L G    WE + G+   +A ++F
Sbjct: 228 ------GWLQRFQGVIGVCVNFNHHVGNRIFGDETQVLAGRPYLWEEMAGVRFQIASTTF 281

Query: 278 GQANTRAFDILLRKLQKYV-PYGAS-VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQ 335
            Q NT   + L+  L+ ++ P G   + DLY G G + L LA A     V  VE++    
Sbjct: 282 FQVNTAQAEQLVTTLRDWIAPTGQERLVDLYCGVGTLSLPLAGA--VAEVIGVEVHSA-- 337

Query: 336 LSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL----VGSDVLVVDPPRKGLDSSLVHAL 391
            S ++ ++    +   N  +  A        WL       DVL++DPPRKG D +++ A+
Sbjct: 338 -SVQQAIANAQHNGINNAHFVCAKAE----EWLPRYDQAVDVLILDPPRKGCDRAVLDAI 392


>sp|P73374|Y1967_SYNY3 Uncharacterized RNA methyltransferase sll1967 OS=Synechocystis sp.
           (strain PCC 6803 / Kazusa) GN=sll1967 PE=3 SV=1
          Length = 463

 Score = 88.2 bits (217), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 134/290 (46%), Gaps = 38/290 (13%)

Query: 104 AKLAVRGTSTSPL---------IGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKEL 154
           A L  R  +T PL          G Y++G+H +V+I  C     R+N  +  +++ I+  
Sbjct: 133 ASLGYRNKATYPLSRSKTGQVQAGYYRKGSHRLVNINQCPVQDDRLNLLLTEVKKDIENR 192

Query: 155 NVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLES 214
               YDE+ + G LR++ + +             R G++ +TL+  S ++  P+ +  E 
Sbjct: 193 GWSIYDEEKKQGKLRHLSLRIGQ-----------RTGEMLLTLI--SAHKGLPDLE--EQ 237

Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
             E+L        R   +  +  N Q   NN IFG+    + G     E    +  SL  
Sbjct: 238 AGEWL-------ERYPDLGGICLNIQPEPNNRIFGDETVVIAGRGICREKFADLSFSLGA 290

Query: 275 SSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
           ++F Q N+ A ++LL +LQ+ +    +  + D YAG G   L L  AR+ R    +E+N+
Sbjct: 291 NTFFQVNSGAAELLLTRLQQALNLQGAELLVDAYAGVGTFTLPL--ARQVRQAIAIEVNQ 348

Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKG 382
           +S    ++  + + +  + +      +  +  LS +   DVL++DPPRKG
Sbjct: 349 DSVHQGQRN-AEINQIANVDFLAGTVETVLPTLSEI--PDVLLLDPPRKG 395


>sp|Q7NGN4|Y3134_GLOVI Uncharacterized RNA methyltransferase gll3134 OS=Gloeobacter
           violaceus (strain PCC 7421) GN=gll3134 PE=3 SV=1
          Length = 457

 Score = 88.2 bits (217), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 145/325 (44%), Gaps = 34/325 (10%)

Query: 96  RLYGWRCRAKLAV-RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKEL 154
           R +G+R ++   + R     P+IG YQ+ +H +V +  C     R++  +   R+ I+  
Sbjct: 132 RPFGYRNKSTFPIGRDARGEPVIGYYQKDSHRIVPLDACPVQDSRLDPLLAAARELIRTQ 191

Query: 155 NVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLES 214
               YDE    G LR++ + +             R G+  +T V N +         ++ 
Sbjct: 192 GWSIYDEKHHRGALRHLGLRIGE-----------RTGQRLLTFVVNGQTLSG-----IKP 235

Query: 215 LAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 274
            A+ L        R   +  V  N  T   N IFG + R L G+    E + G    + P
Sbjct: 236 AAQALM------DRFADLVGVCLNTHTERGNTIFGPQTRCLAGQDFIEEVLDGFRFRIEP 289

Query: 275 SSFGQANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
           ++F Q  T   +IL R + +     A  +V D Y G G   LSL  AR  R+V  +E + 
Sbjct: 290 TTFFQICTSQAEILARLVARGADATAEQTVVDAYCGIGT--LSLPLARAARAVVGIESHV 347

Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQ 392
               S E+  +R    ++G  +      ++E L   + +D++VVDPPRKG D  ++ A+ 
Sbjct: 348 R---SVEQ--ARQNARINGIENCRFLAGTVEALLPDLRADIVVVDPPRKGCDPEVLEAI- 401

Query: 393 SIGSAERKAKSLSESSSSMVKEEKR 417
            + +   +   +S + +++ ++ KR
Sbjct: 402 -LHAVPMRVVYVSCNPATLARDLKR 425


>sp|Q8R918|Y1812_THETN Uncharacterized RNA methyltransferase TTE1812 OS=Thermoanaerobacter
           tengcongensis (strain DSM 15242 / JCM 11007 / NBRC
           100824 / MB4) GN=TTE1812 PE=3 SV=1
          Length = 452

 Score = 87.8 bits (216), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 131/299 (43%), Gaps = 30/299 (10%)

Query: 100 WRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
           +R + +  V       + G Y   +H +V + +C   HP  N  V ++++ + E ++  Y
Sbjct: 127 YRNKGQFVVGEIGREKITGFYSFHSHEIVPVDNCLIQHPLSNKVVSVVKEWLNECDISVY 186

Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL-ESLAEF 218
           D     G +R+V   V            ++ G+V   +V N   E  P  ++L E+L E 
Sbjct: 187 DRKKGKGLIRHVVAKVA-----------FKTGEVMAIIVING--EDIPCKEELIEALKE- 232

Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
                    +   + SV  N  T    +I GN+   + G+    + +  +   ++P SF 
Sbjct: 233 ---------KVPGLKSVILNINTRRTKMILGNKNIVIYGKNTIEDFIKDLRFEISPLSFF 283

Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
           Q N    +IL  K  +Y        V D+Y+G G I  SL AA+K   V  +E  KE+  
Sbjct: 284 QVNPIQTEILYDKAIEYAGLTGKEVVIDVYSGIGTI--SLFAAKKASFVYGIESVKEAVE 341

Query: 337 SFEKTVSRLPKSVDGNISWHNADNSIEPL-SWLVGSDVLVVDPPRKGLDSSLVHALQSI 394
             EK  +++    +    W  A+  I  L    V ++V++VDPPR G D  ++ A+  I
Sbjct: 342 DAEKN-AQVNGVKNVKFIWGKAEREIAKLYKEGVKAEVVIVDPPRDGCDKEVIRAIVGI 399


>sp|Q8DUV4|Y788_STRMU Uncharacterized RNA methyltransferase SMU_788 OS=Streptococcus
           mutans serotype c (strain ATCC 700610 / UA159)
           GN=SMU_788 PE=3 SV=1
          Length = 451

 Score = 86.7 bits (213), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 153/342 (44%), Gaps = 46/342 (13%)

Query: 99  GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
            +R +A++ VR  +     G +++ +H ++ I         I+  +   R  ++  +++P
Sbjct: 125 AYRNKAQVPVRRVNGQLETGFFRKNSHALMPIEDYYIQDKEIDRLINFTRDLLRRFDLKP 184

Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
           YDE ++TG +R           +L     +  G++ + LV  +R++      ++E + E 
Sbjct: 185 YDEKEQTGLIR-----------NLVVRRGHYTGQIMLVLV-TTRSKIF----RIEQMIEK 228

Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
           +       S    + S+  N      N IFG+ +R L GE    + + G    ++  SF 
Sbjct: 229 II------SEFPAVKSIIQNINDRNTNAIFGSEFRTLYGEDTIEDTMLGNRYIISAQSFY 282

Query: 279 QANTRAFDILLRKL-QKYVPYG-----ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINK 332
           Q NT    ++  KL Q  + +       +V D Y+G G IGLS   A+K + V  VE+ +
Sbjct: 283 QVNT----VMAEKLYQTAIDFSDLTPDDTVIDAYSGIGTIGLSF--AKKVKDVYGVEVIE 336

Query: 333 ESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LSWL---VGSDVLVVDPPRKGLDSSL 387
            +    EK       +++   + H   +S E    SW    +  DV++VDPPRKGL  S 
Sbjct: 337 AAVRDAEKNA-----ALNNITNVHYVADSAEKAMASWSKRGIKPDVILVDPPRKGLTESF 391

Query: 388 VHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQ 429
           + A  S     RK   +S + ++M ++ K    L  K   VQ
Sbjct: 392 IEA--STAMQPRKITYISCAPATMARDVKLYEELGYKLVKVQ 431


>sp|Q7V7K6|Y737_PROMM Uncharacterized RNA methyltransferase PMT_0737 OS=Prochlorococcus
           marinus (strain MIT 9313) GN=PMT_0737 PE=3 SV=1
          Length = 465

 Score = 85.9 bits (211), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 157/354 (44%), Gaps = 41/354 (11%)

Query: 54  CPHFQSCSGCT-HEFNLHRPIIVDEA--TDFFKSIGLLDFTF-----DSCRLYGWRCRAK 105
           C   + C GC+    + H   ++ +         +G LD        D  R  G+R RA 
Sbjct: 83  CKIAKECGGCSIQHLSDHGQTLLKQGHLRQILLRLGQLDHKIEPIMTDYNRALGYRNRAL 142

Query: 106 LAVRGTSTSPL-IGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDR 164
           + +   S   L +G Y+ G+H ++D+  C      I+  +  ++  +++ N  P D D  
Sbjct: 143 IPLYRNSEGQLHMGYYRRGSHQIIDLNRCPVLDRGIDQYLASIKDDLQQQN-WPADSDLS 201

Query: 165 TGD-LRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNG 223
           +G+ LR++ + +             +  +V ITLV ++      +    E      W   
Sbjct: 202 SGEGLRHLGIRIGQ-----------KTKQVLITLVSSTTQLSGLHQQAKE------WY-- 242

Query: 224 GSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTR 283
              SR   +  +  N Q   NN++ G     L G+ +  E+   + + L+ ++F Q NT 
Sbjct: 243 ---SRWPEVRGITLNIQRQRNNLVLGQETILLAGDLEIEEHFYNLSLLLSTTTFFQVNTL 299

Query: 284 AFDILLRKLQKYVPYGA---SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340
             + ++ KL +++   +   ++ D Y G G I L +AA      V  +E++ E+     K
Sbjct: 300 QAERIVSKLIEWLSTASLDINIIDAYCGIGTISLPIAAT--GYHVIGLELHAEAITQANK 357

Query: 341 TVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSI 394
              R   S+D N+S+   D S+     L  +DVLV+DPPRKGLD  ++  + SI
Sbjct: 358 NALR--NSLD-NVSFLCGDVSLLLAKKLQRNDVLVLDPPRKGLDQMVIKTILSI 408


>sp|Q9CGB9|YLJE_LACLA Uncharacterized RNA methyltransferase YljE OS=Lactococcus lactis
           subsp. lactis (strain IL1403) GN=yljE PE=3 SV=1
          Length = 460

 Score = 85.9 bits (211), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 135/315 (42%), Gaps = 55/315 (17%)

Query: 93  DSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIK 152
           ++ +   +R +A++ V+        G Y++ +H ++ +      HP I+A V  LR   +
Sbjct: 127 EAIKTINYRNKAQIPVQMVDGLLTTGFYRKNSHTLIPVEDFYIQHPEIDAVVLFLRDEFR 186

Query: 153 ELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKL 212
           ++N++ YDE  R G LR           ++     +  G++ ITLV  S+  K P  +K+
Sbjct: 187 KINLQAYDEKTRKGWLR-----------NIVVRRAFHTGEMMITLVVTSK--KLP--EKV 231

Query: 213 ESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISL 272
           E + + L        R   I SV  N  + T + I G  +  L G+    + +      +
Sbjct: 232 ELVIDHLV------ERFTNIKSVQLNINSGTGSFILGKEFILLYGKDFITDLMLDKTYQI 285

Query: 273 APSSFGQANTRAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAAARKCRSVKCVEI 330
           +  +F Q NT   + L     ++     G  V D Y+G G IG+S+  A +   V  +E+
Sbjct: 286 SAPAFYQVNTPQAEKLYETAYEFAGLKPGDVVIDAYSGIGTIGISM--ADRVAKVYGMEV 343

Query: 331 NKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS---------------DVLV 375
                         +P +V+ N   +   N +E   + VG+               DV+ 
Sbjct: 344 --------------VPAAVE-NAKRNAQLNELENTHYEVGTAEKIMPKWLSEGIKPDVIF 388

Query: 376 VDPPRKGLDSSLVHA 390
           VDPPRKGLD   + A
Sbjct: 389 VDPPRKGLDEGFIKA 403


>sp|Q9CDP0|YWFF_LACLA Uncharacterized RNA methyltransferase YwfF OS=Lactococcus lactis
           subsp. lactis (strain IL1403) GN=ywfF PE=3 SV=1
          Length = 513

 Score = 85.1 bits (209), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 136/313 (43%), Gaps = 40/313 (12%)

Query: 99  GWRCRAKLAVRGTSTSPLI-GLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
           G+R + +  VR  +   +I GLYQEGTH++V++ +C    P+    +  + + I++ ++ 
Sbjct: 129 GYRNKLQFQVRRLNDGTVIAGLYQEGTHHLVNLDNCLVQDPKTQEIINHICRLIEKFDLP 188

Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITL-----------VWNSRNEKS 206
            YDE  + G +R V +  +            + G+VQI             VW    E+ 
Sbjct: 189 VYDE-RKIGGIRTVMVRRSQ-----------KTGEVQIIFVTSTPIILDGQVWPELREE- 235

Query: 207 PNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETD-FWENV 265
           P+  +  S  +F             I +V  NF     + I+G R + L  E +   E V
Sbjct: 236 PSKRQKNSFVKFDKMLSALTEEFEEIVTVAVNFHPRKTSEIYGERTQILFNEKETITEGV 295

Query: 266 GGIDISLAPSSFGQANTRAFDILLRKLQKYV--PYGASVTDLYAGAGVIGLSLAAARKCR 323
              +  L+P +F Q N+   ++L  +  K +       V D Y G G IG   A A+K +
Sbjct: 296 LDYEFELSPRAFYQLNSEQANVLYGEAVKALNPKKDDRVIDAYCGVGTIG--FAVAKKVK 353

Query: 324 SVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWLVG---SDVLVVDP 378
           SV  ++I  ES     +   RL     G  + H      E +  +W      +  ++VDP
Sbjct: 354 SVHGMDITPESIFDARENAKRL-----GLKNCHYEIGKAERIIPNWNKSGHRATAMIVDP 408

Query: 379 PRKGLDSSLVHAL 391
           PR GLD +L+  +
Sbjct: 409 PRTGLDDALLETI 421


>sp|Q8P0H4|Y1360_STRP8 Uncharacterized RNA methyltransferase spyM18_1360 OS=Streptococcus
           pyogenes serotype M18 (strain MGAS8232) GN=spyM18_1360
           PE=3 SV=1
          Length = 462

 Score = 84.0 bits (206), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 160/358 (44%), Gaps = 38/358 (10%)

Query: 81  FFKSIGLLDFTFDSC----RLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAH 136
            +K  G+ D T +S         +R +A++ VR  +     G +++ +H+++ I      
Sbjct: 114 LYKIAGISDVTVESTIGMTEPLAYRNKAQVPVRRVNGQLETGFFRKHSHDLIPISDYYIQ 173

Query: 137 HPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQIT 196
              I+  +   R  ++  +++PYDE ++TG LR           ++     + +G++ + 
Sbjct: 174 DKEIDRLINFTRDLLRRFDIKPYDETEQTGLLR-----------NIVVRRGHYSGEMMVV 222

Query: 197 LVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLL 256
           LV        P   +++ + E +     +      + S+  N      N IFG  ++ L 
Sbjct: 223 LVTT-----RPKVFRVDQVIEKIVEAFPA------VVSIIQNINDENTNAIFGKDFKTLY 271

Query: 257 GETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGL 314
           G+    +++ G + +++  SF Q NT   + L +    +        V D Y+G G IGL
Sbjct: 272 GKDTITDSMLGNNYAISAQSFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGL 331

Query: 315 SLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGS 371
           S   A+  ++V  VE+  E+ +   +  + L    +       A++++   +W    +  
Sbjct: 332 SF--AKTVKAVYGVEV-IEAAVRDAQQNAALNGITNAYFVADTAEHAMA--TWAKDGIKP 386

Query: 372 DVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQ 429
            V++VDPPRKGL  S + A  S+    +K   +S + ++M ++ KR   L  K A VQ
Sbjct: 387 SVILVDPPRKGLTESFIQA--SVAMGPQKITYVSCNPATMARDIKRYQELGYKLAKVQ 442


>sp|Q99Z86|Y1346_STRP1 Uncharacterized RNA methyltransferase SPy_1346/M5005_Spy1098
           OS=Streptococcus pyogenes serotype M1 GN=SPy_1346 PE=3
           SV=1
          Length = 462

 Score = 82.8 bits (203), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 160/358 (44%), Gaps = 38/358 (10%)

Query: 81  FFKSIGLLDFTFDSC----RLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAH 136
            +K  G+ D T +S         +R +A++ VR  +     G +++ +H+++ I      
Sbjct: 114 LYKIAGISDVTVESTIGMTEPLAYRNKAQVPVRRVNGQLETGFFRKHSHDLIPISDYYIQ 173

Query: 137 HPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQIT 196
              I+  +   R  ++  +++PYDE ++TG LR           ++     + +G++ + 
Sbjct: 174 DKEIDRLINFTRDLLRRFDIKPYDETEQTGLLR-----------NIVVRRGHYSGEMMLV 222

Query: 197 LVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLL 256
           LV        P   +++ + E +     +      + S+  N      N IFG  ++ L 
Sbjct: 223 LVTT-----RPKVFRVDQVIEKIVEAFPA------VVSIIQNINDKNTNAIFGKDFKTLY 271

Query: 257 GETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGL 314
           G+    +++ G + +++  SF Q NT   + L +    +        V D Y+G G IGL
Sbjct: 272 GKDTITDSMLGNNYAISAQSFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGL 331

Query: 315 SLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGS 371
           S   A+  ++V  VE+  E+ +   +  + L    +       A++++   +W    +  
Sbjct: 332 SF--AKTVKAVYGVEV-IEAAVRDAQQNAALNGITNAYFVADTAEHAMA--TWAKDGIKP 386

Query: 372 DVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQ 429
            V++VDPPRKGL  S + A  S+    +K   +S + ++M ++ KR   L  K A VQ
Sbjct: 387 SVILVDPPRKGLTESFIQA--SVAMGPQKITYVSCNPATMARDIKRYQELGYKLAKVQ 442


>sp|Q5XBK8|Y1070_STRP6 Uncharacterized RNA methyltransferase M6_Spy1070 OS=Streptococcus
           pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394)
           GN=M6_Spy1070 PE=3 SV=1
          Length = 462

 Score = 82.4 bits (202), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 160/358 (44%), Gaps = 38/358 (10%)

Query: 81  FFKSIGLLDFTFDSC----RLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAH 136
            +K  G+ D T +S         +R +A++ VR  +     G +++ +H+++ I      
Sbjct: 114 LYKIAGISDVTVESTIGMTEPLAYRNKAQVPVRRVNGQLETGFFRKHSHDLIPISDYYIQ 173

Query: 137 HPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQIT 196
              I+  +   R  ++  +++PYDE ++TG LR           ++     + +G++ + 
Sbjct: 174 DKEIDRLINFTRDLLRRFDIKPYDETEQTGLLR-----------NIVVRRGHYSGEMMLV 222

Query: 197 LVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLL 256
           LV        P   +++ + E +     +      + S+  N      N IFG  ++ L 
Sbjct: 223 LVTT-----RPKVFRVDQVIEKIVEAFPA------VVSIIQNINDKNTNAIFGKDFKTLY 271

Query: 257 GETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGL 314
           G+    +++ G + +++  SF Q NT   + L +    +        V D Y+G G IGL
Sbjct: 272 GKDTITDSMLGNNYAISAQSFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGL 331

Query: 315 SLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGS 371
           S   A+  ++V  VE+  E+ +   +  + L    +       A++++   +W    +  
Sbjct: 332 SF--AKTVKAVYGVEV-IEAAVRDAQHNAALNGITNAYFVADTAEHAMA--TWAKDGIKP 386

Query: 372 DVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQ 429
            V++VDPPRKGL  S + A  S+    +K   +S + ++M ++ KR   L  K A VQ
Sbjct: 387 SVILVDPPRKGLTESFIQA--SVAMGPQKITYVSCNPATMARDIKRYQELGYKLAKVQ 442


>sp|P0DG15|Y1024_STRPQ Uncharacterized RNA methyltransferase SPs0836 OS=Streptococcus
           pyogenes serotype M3 (strain SSI-1) GN=SPs0836 PE=3 SV=1
          Length = 462

 Score = 82.4 bits (202), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 160/358 (44%), Gaps = 38/358 (10%)

Query: 81  FFKSIGLLDFTFDSC----RLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAH 136
            +K  G+ D T +S         +R +A++ VR  +     G +++ +H+++ I      
Sbjct: 114 LYKIAGISDVTVESTIGMTEPLAYRNKAQVPVRRVNGQLETGFFRKHSHDLIPISDYYIQ 173

Query: 137 HPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQIT 196
              I+  +   R  ++  +++PYDE ++TG LR           ++     + +G++ + 
Sbjct: 174 DKEIDRLINFTRDLLRRFDIKPYDETEQTGLLR-----------NIVVRRGHYSGEMMLV 222

Query: 197 LVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLL 256
           LV        P   +++ + E +     +      + S+  N      N IFG  ++ L 
Sbjct: 223 LVTT-----RPKVFRVDQVIEKIVEAFPA------VVSIIQNINDKNTNAIFGKDFKTLY 271

Query: 257 GETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGL 314
           G+    +++ G + +++  SF Q NT   + L +    +        V D Y+G G IGL
Sbjct: 272 GKDTITDSMLGNNYAISAQSFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGL 331

Query: 315 SLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGS 371
           S   A+  ++V  VE+  E+ +   +  + L    +       A++++   +W    +  
Sbjct: 332 SF--AKTVKAVYGVEV-IEAAVRDAQHNAALNGITNAYFVADTAEHAMA--TWAKDGIKP 386

Query: 372 DVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQ 429
            V++VDPPRKGL  S + A  S+    +K   +S + ++M ++ KR   L  K A VQ
Sbjct: 387 SVILVDPPRKGLTESFIQA--SVAMGPQKITYVSCNPATMARDIKRYQELGYKLAKVQ 442


>sp|P0DG14|Y1024_STRP3 Uncharacterized RNA methyltransferase SpyM3_1024 OS=Streptococcus
           pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315)
           GN=SpyM3_1024 PE=3 SV=1
          Length = 462

 Score = 82.4 bits (202), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 160/358 (44%), Gaps = 38/358 (10%)

Query: 81  FFKSIGLLDFTFDSC----RLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAH 136
            +K  G+ D T +S         +R +A++ VR  +     G +++ +H+++ I      
Sbjct: 114 LYKIAGISDVTVESTIGMTEPLAYRNKAQVPVRRVNGQLETGFFRKHSHDLIPISDYYIQ 173

Query: 137 HPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQIT 196
              I+  +   R  ++  +++PYDE ++TG LR           ++     + +G++ + 
Sbjct: 174 DKEIDRLINFTRDLLRRFDIKPYDETEQTGLLR-----------NIVVRRGHYSGEMMLV 222

Query: 197 LVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLL 256
           LV        P   +++ + E +     +      + S+  N      N IFG  ++ L 
Sbjct: 223 LVTT-----RPKVFRVDQVIEKIVEAFPA------VVSIIQNINDKNTNAIFGKDFKTLY 271

Query: 257 GETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGL 314
           G+    +++ G + +++  SF Q NT   + L +    +        V D Y+G G IGL
Sbjct: 272 GKDTITDSMLGNNYAISAQSFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGL 331

Query: 315 SLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGS 371
           S   A+  ++V  VE+  E+ +   +  + L    +       A++++   +W    +  
Sbjct: 332 SF--AKTVKAVYGVEV-IEAAVRDAQHNAALNGITNAYFVADTAEHAMA--TWAKDGIKP 386

Query: 372 DVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQ 429
            V++VDPPRKGL  S + A  S+    +K   +S + ++M ++ KR   L  K A VQ
Sbjct: 387 SVILVDPPRKGLTESFIQA--SVAMGPQKITYVSCNPATMARDIKRYQELGYKLAKVQ 442


>sp|Q8YR05|Y3654_NOSS1 Uncharacterized RNA methyltransferase alr3654 OS=Nostoc sp. (strain
           PCC 7120 / UTEX 2576) GN=alr3654 PE=3 SV=1
          Length = 460

 Score = 82.4 bits (202), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 130/295 (44%), Gaps = 28/295 (9%)

Query: 99  GWRCRAKLAVRGTSTSPL-IGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVE 157
           G+R +A   +  ++T  +  G YQ+G+H+VV++  C    PR+N  +  ++Q I++ +  
Sbjct: 129 GYRNKATYPLDVSATGQVQAGYYQKGSHHVVNLNQCPVQDPRLNPLLAQVKQDIQQRDWP 188

Query: 158 PYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAE 217
            YDE    G +R++ + +             R G++ +TLV    N         E L  
Sbjct: 189 IYDEKRHQGQIRHLGLRIGR-----------RTGEILLTLVVKDGNLPGIEQQAQEWLQR 237

Query: 218 FLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSF 277
           +    G S +R                N IFG   R + G     E   G++  + P +F
Sbjct: 238 YPQLVGVSLNRN-----------PERTNAIFGRETRCIAGVPYLREIFAGLEFQVRPDTF 286

Query: 278 GQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
            Q  T   + LL+ ++  +      T + A  G+  L+L  +++ R    +E+  E   +
Sbjct: 287 FQVFTETAEALLQVIESQLNLQGHETLIDAYCGIGTLTLPLSKQVRQAIGLELQPE---A 343

Query: 338 FEKTVSRLPKSVDGNISWH-NADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHAL 391
            ++ +     +   N+ +   A   + P   ++  DV+++DPPRKG D  ++ +L
Sbjct: 344 VQQAIVNAQHNGINNVEFQVGAVEKLLPKMGII-PDVVLLDPPRKGCDRIVIESL 397


>sp|Q8R5Z8|Y1713_FUSNN Uncharacterized RNA methyltransferase FN1713 OS=Fusobacterium
           nucleatum subsp. nucleatum (strain ATCC 25586 / CIP
           101130 / JCM 8532 / LMG 13131) GN=FN1713 PE=3 SV=1
          Length = 464

 Score = 82.4 bits (202), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 140/317 (44%), Gaps = 52/317 (16%)

Query: 97  LYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNV 156
           +Y +R +        +   + G ++  +H V ++     +    N  ++ L++ + +  +
Sbjct: 135 IYNYRNKIIEPFSVYANKIITGFFKRKSHEVFEVDENILNSKLGNKIIKELKEILNKNKI 194

Query: 157 EPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLA 216
             YDE+   G LR + +   + N ++            + L+ NS N+ + N  KL    
Sbjct: 195 SVYDENTHKGILRNIMIRTNSNNEAM------------VVLIINS-NKITENIKKL---- 237

Query: 217 EFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276
             L++    R     I S++ +  +   N + G +   + GE    EN+  I+  ++P+S
Sbjct: 238 --LFK---LRENIEEIKSIYISLNSKKTNTVIGEKNILIYGEKSIKENINRIEFHISPTS 292

Query: 277 FGQANT----RAFDILLRKL----QKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCV 328
           F Q N     R +DI +        KY      + D Y+G G IG+ +  A+K + V  +
Sbjct: 293 FFQINVKQAKRLYDIAISFFDNIDNKY------IVDAYSGTGTIGMII--AKKAKKVYAI 344

Query: 329 EINKESQLSFEKTVSRLPKSVDG--NISWHNADNSIEP-LSWLVGS----DVLVVDPPRK 381
           EI K +    EKT        +G  NI + N   ++E  L  LV +    D ++ DPPRK
Sbjct: 345 EIVKSASEDGEKTAKE-----NGIENIEFING--AVEKELVKLVNNNQKIDTIIFDPPRK 397

Query: 382 GLDSSLVHALQSIGSAE 398
           GL++S++  +  +   E
Sbjct: 398 GLETSIIDKVAELNLKE 414


>sp|Q8CRU6|Y1582_STAES Uncharacterized RNA methyltransferase SE_1582 OS=Staphylococcus
           epidermidis (strain ATCC 12228) GN=SE_1582 PE=3 SV=2
          Length = 456

 Score = 82.0 bits (201), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 152/368 (41%), Gaps = 73/368 (19%)

Query: 54  CPHFQSCSGCT-------HEFNLHRPIIVD--------EATDFFKSIGLLDFTFDSCRLY 98
           C ++  C GC         + ++ R  +V+        E T   ++IG+++         
Sbjct: 74  CIYYAKCGGCQLQHMTYRAQLDMKREQVVNLFHRKGPFENTVIKETIGMVN--------- 124

Query: 99  GWRCRAKLAV---RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELN 155
            WR R K  +   +  S   ++G Y++ +H+++D+  C     +    +  ++  + ELN
Sbjct: 125 PWRYRNKSQIPVGQSNSNQVIMGFYRQRSHDIIDMDSCLIQDRQHQEVMNRVKYWLNELN 184

Query: 156 VEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKV--QITLVWNSRNEKSPNSDKLE 213
           +  Y+E  +TG +R++ +  T Y+T         NG    Q  L+ N   ++ PN     
Sbjct: 185 ISIYNEKTKTGLIRHL-VVRTGYHTDEMMVIFVTNGATFKQSELLVNKLKKEFPN----- 238

Query: 214 SLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLA 273
                             I S+  N   S +NVI G +   L G+    + +  +   ++
Sbjct: 239 ------------------ITSIKQNINNSHSNVIMGRQSMTLYGKDKIEDQLSEVTYHIS 280

Query: 274 PSSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKC--------R 323
             SF Q N+   + L ++   Y        V D Y G G IGL +A   K         +
Sbjct: 281 DLSFYQINSSQTEKLYQQALNYAQLTGKEIVLDTYCGIGTIGLYMAPLAKHVYGVEVVPQ 340

Query: 324 SVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGL 383
           ++K  E N  ++   + T     K+ D  ++W +    I+P       DV++VDPPRKG 
Sbjct: 341 AIKDAEDNA-TKNQLKNTTFECGKAEDVILTWKS--QGIKP-------DVVMVDPPRKGC 390

Query: 384 DSSLVHAL 391
           D + +  L
Sbjct: 391 DETFLTTL 398


>sp|Q71YW4|Y1727_LISMF Uncharacterized RNA methyltransferase LMOf2365_1727 OS=Listeria
           monocytogenes serotype 4b (strain F2365)
           GN=LMOf2365_1727 PE=3 SV=1
          Length = 459

 Score = 80.1 bits (196), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 84/381 (22%), Positives = 156/381 (40%), Gaps = 83/381 (21%)

Query: 54  CPHFQSCSGC-------THEFNLHRPIIVDEATDFFK----------SIGLLDFTFDSCR 96
           CP +++C GC       + +  L R I++       K          +IG+ D       
Sbjct: 76  CPVYEACGGCQLQHVAYSAQLELKRDIVIQSIEKHTKIDPTKLKIRPTIGMED------- 128

Query: 97  LYGWRCRAKLAVRGTSTSPL-IGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELN 155
            + +R +++   R   +  +  GL+   +H +V I  C    P        +R  +++  
Sbjct: 129 PWRYRNKSQFQTRMVGSGQVETGLFGANSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYG 188

Query: 156 VEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESL 215
           V  YDE   +G +R + +               + G+ Q+  + NS+  K P   K E L
Sbjct: 189 VPIYDEKAGSGIVRTIVVRTGV-----------KTGETQLVFITNSK--KLPK--KREML 233

Query: 216 AEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPS 275
           AE         +    + S+  N   + +++IFG+    L G+    E +  ++  L+  
Sbjct: 234 AEI-------EAALPEVTSIMQNVNQAKSSLIFGDETFLLAGKESIEEKLMELEFDLSAR 286

Query: 276 SFGQANTRAFDILLRKLQKYVPYGASVT--DLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
           +F Q N    + L ++++K +    S T  D Y G G IG + A   K + V+ ++I   
Sbjct: 287 AFFQLNPFQTERLYQEVEKALVLTGSETLVDAYCGVGTIGQAFAG--KVKEVRGMDI--- 341

Query: 334 SQLSFEKTVSRLPKSVDGNISWHNAD-NSIEPLSWLVGS---------------DVLVVD 377
                      +P+S++   +  NA+ N IE + + VG                D ++VD
Sbjct: 342 -----------IPESIED--AKRNAEKNGIENVYYEVGKAEDVLPKWVNEGFRPDAVIVD 388

Query: 378 PPRKGLDSSLVHALQSIGSAE 398
           PPR G D  L+ +L  + + +
Sbjct: 389 PPRSGCDQGLIKSLLDVEAKQ 409


>sp|Q8Y6I1|Y1703_LISMO Uncharacterized RNA methyltransferase lmo1703 OS=Listeria
           monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
           GN=lmo1703 PE=3 SV=1
          Length = 459

 Score = 80.1 bits (196), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 84/381 (22%), Positives = 156/381 (40%), Gaps = 83/381 (21%)

Query: 54  CPHFQSCSGC-------THEFNLHRPIIVDEATDFFK----------SIGLLDFTFDSCR 96
           CP +++C GC       + +  L R I++       K          +IG+ D       
Sbjct: 76  CPVYEACGGCQLQHVAYSAQLELKRDIVIQSIEKHTKIDPTKLKIRPTIGMED------- 128

Query: 97  LYGWRCRAKLAVRGTSTSPL-IGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELN 155
            + +R +++   R   +  +  GL+   +H +V I  C    P        +R  +++  
Sbjct: 129 PWRYRNKSQFQTRMVGSGQVETGLFGANSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYG 188

Query: 156 VEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESL 215
           V  YDE   +G +R + +               + G+ Q+  + NS+  K P   K E L
Sbjct: 189 VPIYDEKAGSGIVRTIVVRTGV-----------KTGETQLVFITNSK--KLPK--KREML 233

Query: 216 AEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPS 275
           AE         +    + S+  N   + +++IFG+    L G+    E +  ++  L+  
Sbjct: 234 AEI-------EAALPEVTSIMQNVNQAKSSLIFGDETFLLAGKESIEEKLMELEFDLSAR 286

Query: 276 SFGQANTRAFDILLRKLQKYVPYGASVT--DLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
           +F Q N    + L ++++K +    S T  D Y G G IG + A   K + V+ ++I   
Sbjct: 287 AFFQLNPFQTERLYQEVEKALVLTGSETLVDAYCGVGTIGQAFAG--KVKEVRGMDI--- 341

Query: 334 SQLSFEKTVSRLPKSVDGNISWHNAD-NSIEPLSWLVGS---------------DVLVVD 377
                      +P+S++   +  NA+ N IE + + VG                D ++VD
Sbjct: 342 -----------IPESIED--AKRNAEKNGIENVYYEVGKAEDVLPKWVKEGFRPDAVIVD 388

Query: 378 PPRKGLDSSLVHALQSIGSAE 398
           PPR G D  L+ +L  + + +
Sbjct: 389 PPRSGCDQGLIKSLLDVEAKQ 409


>sp|Q8DSK3|Y1779_STRMU Uncharacterized RNA methyltransferase SMU_1779c OS=Streptococcus
           mutans serotype c (strain ATCC 700610 / UA159)
           GN=SMU_1779c PE=3 SV=1
          Length = 459

 Score = 79.3 bits (194), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 143/357 (40%), Gaps = 52/357 (14%)

Query: 54  CPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLDF------TFDSCRLYG------WR 101
           CP ++ C GC    +L     +D   D  K   L  F      T+D     G      +R
Sbjct: 73  CPIYEECGGC-QIMHLRYDKQLDFKKDLLKQ-ALKKFKPQGYETYDIRATIGMEHPQHYR 130

Query: 102 CRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDE 161
            + +   R    S   GL++E +H++VDI  C          V  + Q + + N+  YDE
Sbjct: 131 AKLQFQTRKFGGSVRAGLFKEQSHHLVDIKDCLIQDELTQKIVNRVCQLLDDYNIPVYDE 190

Query: 162 DDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWR 221
                 +R + +             R      Q+ L++ +  E +               
Sbjct: 191 RRHFAGVRTIMV-------------RKSQATNQVQLIFVTSKEVNLV------------- 224

Query: 222 NGGSRSREHY---IHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
            G  R    Y   I +V  NF +S ++ I+G +   L G     E V     SL+P +F 
Sbjct: 225 -GIIRDLTGYFPEIKTVAVNFNSSKSSAIYGQKTEILWGIDSISEEVLDYSFSLSPRAFY 283

Query: 279 QANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336
           Q N +   +L  +  + +   A   + D Y G G IG  LA A K +SV+ ++I  E+  
Sbjct: 284 QLNPQQTQVLYHQALQALDVTAEDHLIDAYCGVGSIG--LAFANKVKSVRGMDIIPEAIT 341

Query: 337 SFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVG--SDVLVVDPPRKGLDSSLVHAL 391
             ++   R+  + +       A+N I P  +  G  +  L+VDPPR GLD  L+  L
Sbjct: 342 DAKRNAERMGYT-NTYYEMGKAENVI-PKWYKDGYQASALIVDPPRTGLDEKLLKTL 396


>sp|Q5HN37|Y1435_STAEQ Uncharacterized RNA methyltransferase SERP1435 OS=Staphylococcus
           epidermidis (strain ATCC 35984 / RP62A) GN=SERP1435 PE=3
           SV=1
          Length = 456

 Score = 79.0 bits (193), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 151/368 (41%), Gaps = 73/368 (19%)

Query: 54  CPHFQSCSGCT-------HEFNLHRPIIVD--------EATDFFKSIGLLDFTFDSCRLY 98
           C ++  C GC         + ++ R  +V+        E T   ++IG+++         
Sbjct: 74  CIYYAKCGGCQLQHMTYRAQLDMKREQVVNLFHRKGPFENTVIKETIGMVN--------- 124

Query: 99  GWRCRAKLAV---RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELN 155
            WR R K  +   +  S   ++G Y++ +H+++D+  C     +    +  ++  + ELN
Sbjct: 125 PWRYRNKSQIPVGQSNSNQVIMGFYRQRSHDIIDMDSCLIQDRQHQEVMNRVKYWLNELN 184

Query: 156 VEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKV--QITLVWNSRNEKSPNSDKLE 213
           +  Y+E  +TG +R++ +  T Y+T         NG    Q  L+ N   ++ PN     
Sbjct: 185 ISIYNEKTKTGLIRHL-VVRTGYHTDEMMVIFVTNGATFKQSELLVNKLKKEFPN----- 238

Query: 214 SLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLA 273
                             I S+  N   S +NVI G +   L G+    + +  +   ++
Sbjct: 239 ------------------ITSIKQNINNSHSNVIMGRQSMTLYGKDKIEDQLSEVTYHIS 280

Query: 274 PSSFGQANTRAFDILLRKLQKYVPYGAS--VTDLYAGAGVIGLSLAAARKC--------R 323
             SF Q N+   + L ++   Y        V D Y G G IGL +A   K         +
Sbjct: 281 DLSFYQINSSQTEKLYQQALNYAQLTGKEIVLDTYCGIGTIGLYMAPLAKHVYGVEVVPQ 340

Query: 324 SVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGL 383
           ++K  E N  ++   + T     K+ D  ++W +    I+P        V++VDPPRKG 
Sbjct: 341 AIKDAEDNA-TKNQLKNTTFECGKAEDVILTWKS--QGIKP-------GVVMVDPPRKGC 390

Query: 384 DSSLVHAL 391
           D + +  L
Sbjct: 391 DETFLTTL 398


>sp|Q74I68|Y1698_LACJO Uncharacterized RNA methyltransferase LJ_1698 OS=Lactobacillus
           johnsonii (strain CNCM I-12250 / La1 / NCC 533)
           GN=LJ_1698 PE=3 SV=1
          Length = 450

 Score = 78.6 bits (192), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 150/336 (44%), Gaps = 65/336 (19%)

Query: 99  GWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEP 158
           G+R +A++ VR  +    IG +++ +H++V +       P I+  +  +R  +++ +V  
Sbjct: 123 GYRNKAQVPVREVNGKLDIGFFRKHSHDLVPLTSFFTTDPEIDRVLIKVRDILRKNHVPA 182

Query: 159 YDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEF 218
           YDE    G++RY+++                 G++ + LV   ++       +L+ + + 
Sbjct: 183 YDEIHNKGEVRYLEV-----------RRSKATGEIMVILVCLHKD-----FPQLKEVTKE 226

Query: 219 LWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFG 278
           +    G       + SV  N      NVI G +   L GE    + +G +   ++P SF 
Sbjct: 227 ISEIKG-------VTSVVLNHNPKKTNVILGKKDYLLWGEPQITDKIGDVSFKISPQSFF 279

Query: 279 QANT----RAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334
           Q N+    R +D+ ++K    +     V D Y+G G IGLS+  A+  ++V+ +E+ +  
Sbjct: 280 QINSLQTPRLYDLAIQKAD--LKPDDVVIDAYSGIGTIGLSV--AKHVKAVRGMEVIE-- 333

Query: 335 QLSFEKTVSRLPKSVDGNISWHNAD-NSIEPLSWLVG---------------SDVLVVDP 378
                      P   D N    NA  N I    ++VG               +DV+ VDP
Sbjct: 334 -----------PAVEDAN---ANAKLNGITNAEYVVGKAEEVMPRWAKEGLKTDVIFVDP 379

Query: 379 PRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKE 414
           PRKGL    + A  ++ +  +K   +S + ++MV++
Sbjct: 380 PRKGLTPEFIDA--AVETNPKKIVYISCNPATMVRD 413


>sp|Q92AV4|Y1815_LISIN Uncharacterized RNA methyltransferase lin1815 OS=Listeria innocua
           serovar 6a (strain CLIP 11262) GN=lin1815 PE=3 SV=1
          Length = 457

 Score = 78.6 bits (192), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/381 (21%), Positives = 155/381 (40%), Gaps = 83/381 (21%)

Query: 54  CPHFQSCSGC-------THEFNLHRPIIVDEATDFFK----------SIGLLDFTFDSCR 96
           CP +++C GC         +  L R I++       K          +IG+ D       
Sbjct: 76  CPVYEACGGCQLQHVAYNAQLELKRDIVIQSIEKHTKIDPAKLKIRPTIGMED------- 128

Query: 97  LYGWRCRAKLAVRGTSTSPL-IGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELN 155
            + +R +++   R   +  +  GL+   +H +V I  C    P        +R  +++  
Sbjct: 129 PWRYRNKSQFQTRMVGSGQVETGLFGANSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYG 188

Query: 156 VEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESL 215
           V  YDE   +G +R + +               + G+ Q+  + NS+  K P   K E L
Sbjct: 189 VPIYDEKAGSGIIRTIVVRTGV-----------KTGETQLVFITNSK--KLPK--KREML 233

Query: 216 AEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPS 275
           AE         +    + S+  N   + +++IFG+    L G+    E +  ++  L+  
Sbjct: 234 AEI-------EAALPEVTSIMQNVNQAKSSLIFGDETFLLAGKESIEEKLMELEFDLSAR 286

Query: 276 SFGQANTRAFDILLRKLQKYVPYGASVT--DLYAGAGVIGLSLAAARKCRSVKCVEINKE 333
           +F Q N    + L ++++K +    S T  D Y G G IG + A   K + V+ ++I   
Sbjct: 287 AFFQLNPFQTERLYQEVEKALVLTGSETLVDAYCGVGTIGQAFAG--KVKEVRGMDI--- 341

Query: 334 SQLSFEKTVSRLPKSVDGNISWHNAD-NSIEPLSWLVGS---------------DVLVVD 377
                      +P+S++   +  NA+ N I+ + + VG                D ++VD
Sbjct: 342 -----------IPESIED--AKRNAEKNGIDNVYYEVGKAEDVLPKWVKEGFRPDAVIVD 388

Query: 378 PPRKGLDSSLVHALQSIGSAE 398
           PPR G D  L+ +L  + + +
Sbjct: 389 PPRSGCDQGLIKSLLQVEAKQ 409


>sp|Q7U6V8|Y1228_SYNPX Uncharacterized RNA methyltransferase SYNW1228 OS=Synechococcus sp.
           (strain WH8102) GN=SYNW1228 PE=3 SV=1
          Length = 465

 Score = 77.4 bits (189), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 146/361 (40%), Gaps = 58/361 (16%)

Query: 54  CPHFQSCSGCTHEF------------NLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWR 101
           C   Q C GCT +              LH+ ++     D  ++  L D      R  G+R
Sbjct: 84  CILAQDCGGCTLQHLEESAQRNWKQNQLHQTMLRLGGIDHPQAPALTDQ-----RGLGYR 138

Query: 102 CRAKLAVR-GTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYD 160
            R  + +R G      +G ++ G+H +V++  C    PR++A VE L+Q +    +    
Sbjct: 139 NRGLIPLRRGEDDRLRMGYFRRGSHRIVNLSRCPVLDPRLDALVEPLKQDLDTSGLSADH 198

Query: 161 EDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLW 220
           +   +  LR++ + +            +  G+V IT+V       S     L+ LA+  W
Sbjct: 199 DLSHSQGLRHLGLRIG-----------HHTGEVLITVV------SSQQLPALQRLAQQ-W 240

Query: 221 RNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQA 280
                  R   +  V  N Q    N I G     L G     E   G+ + L+ ++F Q 
Sbjct: 241 IE-----RWDPVKGVTLNLQPRRTNQILGATTTVLAGAPTIRELFCGLQLQLSTTTFFQI 295

Query: 281 NTRAFDILLRKLQKYV---PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337
           NT   + ++  +  ++        + D Y G G I L LAA  +   V  +EIN +S   
Sbjct: 296 NTPQAERIVACIVSWLSQAELAGPIVDAYCGIGTISLPLAA--QGHHVVGLEINPDS--- 350

Query: 338 FEKTVSRLPKSVDGN-----ISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQ 392
               + +   + D N       +   D +      L     LVVDPPR+GL+SS++ A+ 
Sbjct: 351 ----IDQARSNADANGLGARTEFQAGDVANLLKETLATCSALVVDPPRRGLESSVIEAIL 406

Query: 393 S 393
           S
Sbjct: 407 S 407


>sp|B3GXZ9|RLMC_ACTP7 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC
           OS=Actinobacillus pleuropneumoniae serotype 7 (strain
           AP76) GN=rlmC PE=3 SV=1
          Length = 391

 Score = 76.6 bits (187), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 83/364 (22%), Positives = 152/364 (41%), Gaps = 44/364 (12%)

Query: 52  LQCPHFQS--CSGCTHEFNLHRPIIVDEATDFFKSIG---LLDFT-----FDSCRLYGWR 101
           L CPHFQ   C  C      +   + D+  D  + I    L +FT       S +   +R
Sbjct: 3   LNCPHFQQQDCVSCQWLEKPYATQLTDKEIDLKRLISPFILQNFTEILPPVQSSQ-KQFR 61

Query: 102 CRAKLAVRGTSTSPLIGLYQEGT--HNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPY 159
            +AK+ V G+   P++G+ ++ T   + +D+  C  +     A   +L+  I    + PY
Sbjct: 62  NKAKMVVSGSVERPILGILKDQTDPQSGIDLCDCPLYPTEFEALFPILKDFIARAGLVPY 121

Query: 160 DEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFL 219
           +   + G+L+Y+ +  + YN S           + +  V  S  ++     +L +L   L
Sbjct: 122 NIAKKKGELKYILLTQSRYNQS-----------IMLRFVLKSEQKRPLVERELPNLLAKL 170

Query: 220 WRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQ 279
            ++            V  N Q     ++ G     L  +T   EN   I + + P  F Q
Sbjct: 171 PKDS----------VVSLNIQPQHAAILEGETEIFLTEKTTIEENFNDIPLFIRPQGFFQ 220

Query: 280 ANTRAFDILLRKLQKYVPYGA--SVTDLYAGAGVIGLSLAAARKCRS----VKCVEINKE 333
            N      L    Q ++   A     DL+ G G  GL  A A + ++    +  +EI+  
Sbjct: 221 TNPNVASQLYATAQNWIKDLAIQQFWDLFCGVGGFGLHCAKALQEKNENVQLTSIEISAS 280

Query: 334 SQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS-DVLVVDPPRKGLDSSLVHALQ 392
           +  S  K+  +L      NI++ + D++   L+    + D+++V+PPR+G+   L   L 
Sbjct: 281 AIASATKSAEQLQLK---NITFASLDSAQFALNEKSATPDLVIVNPPRRGIGKPLAEFLN 337

Query: 393 SIGS 396
            +G+
Sbjct: 338 QLGT 341


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.132    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 177,404,409
Number of Sequences: 539616
Number of extensions: 7563904
Number of successful extensions: 36414
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 297
Number of HSP's that attempted gapping in prelim test: 34863
Number of HSP's gapped (non-prelim): 1278
length of query: 457
length of database: 191,569,459
effective HSP length: 121
effective length of query: 336
effective length of database: 126,275,923
effective search space: 42428710128
effective search space used: 42428710128
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)