Query 044572
Match_columns 457
No_of_seqs 308 out of 3102
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 04:37:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044572.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044572hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2265 TrmA SAM-dependent met 100.0 4.6E-60 1E-64 486.5 34.7 341 45-426 60-412 (432)
2 TIGR00479 rumA 23S rRNA (uraci 100.0 1E-57 2.2E-62 475.7 38.6 365 44-444 48-427 (431)
3 TIGR02085 meth_trns_rumB 23S r 100.0 1.3E-56 2.8E-61 458.0 38.6 353 53-444 1-363 (374)
4 PRK13168 rumA 23S rRNA m(5)U19 100.0 3E-50 6.5E-55 420.4 36.8 343 45-444 71-431 (443)
5 PRK05031 tRNA (uracil-5-)-meth 100.0 3.3E-49 7.2E-54 401.6 33.2 326 60-444 1-350 (362)
6 PF05958 tRNA_U5-meth_tr: tRNA 100.0 2E-45 4.3E-50 372.3 27.7 317 69-444 2-340 (352)
7 KOG2187 tRNA uracil-5-methyltr 100.0 2.1E-43 4.6E-48 357.2 31.4 356 50-431 126-511 (534)
8 PRK03522 rumB 23S rRNA methylu 100.0 1.4E-41 3.1E-46 340.1 31.8 300 107-444 2-303 (315)
9 TIGR02143 trmA_only tRNA (urac 100.0 2.1E-41 4.5E-46 343.1 32.8 310 76-444 11-341 (353)
10 COG1092 Predicted SAM-dependen 99.8 3.1E-19 6.6E-24 181.1 21.4 195 251-453 167-390 (393)
11 PRK15128 23S rRNA m(5)C1962 me 99.8 1.2E-18 2.6E-23 178.8 18.9 188 251-452 170-392 (396)
12 PF10672 Methyltrans_SAM: S-ad 99.8 4E-18 8.8E-23 166.8 13.6 171 249-430 72-259 (286)
13 PRK10909 rsmD 16S rRNA m(2)G96 99.7 4.8E-17 1E-21 152.0 16.0 134 266-404 21-158 (199)
14 PRK04338 N(2),N(2)-dimethylgua 99.7 2.2E-16 4.8E-21 161.5 13.6 124 275-405 31-158 (382)
15 TIGR03704 PrmC_rel_meth putati 99.7 6.7E-16 1.4E-20 149.8 15.2 119 251-381 42-164 (251)
16 PF02475 Met_10: Met-10+ like- 99.7 1.9E-15 4.1E-20 140.9 14.8 175 211-400 21-197 (200)
17 PRK11783 rlmL 23S rRNA m(2)G24 99.6 4.8E-15 1E-19 163.2 17.4 138 259-404 499-655 (702)
18 PRK14966 unknown domain/N5-glu 99.6 7.7E-15 1.7E-19 149.7 15.1 124 249-382 208-331 (423)
19 TIGR03533 L3_gln_methyl protei 99.6 1.2E-14 2.7E-19 143.4 15.7 121 252-381 78-200 (284)
20 PRK11805 N5-glutamine S-adenos 99.6 2E-14 4.3E-19 143.4 14.9 124 251-383 89-214 (307)
21 PF05175 MTS: Methyltransferas 99.6 5.4E-14 1.2E-18 128.5 16.6 107 268-381 2-109 (170)
22 TIGR00095 RNA methyltransferas 99.6 5.8E-14 1.2E-18 130.5 14.9 135 266-404 17-158 (189)
23 COG0742 N6-adenine-specific me 99.6 3E-14 6.5E-19 130.1 12.5 134 267-404 11-153 (187)
24 PF03602 Cons_hypoth95: Conser 99.5 1.1E-14 2.4E-19 134.4 7.7 135 266-404 9-152 (183)
25 COG2263 Predicted RNA methylas 99.5 3.8E-13 8.2E-18 121.8 16.3 122 282-422 28-154 (198)
26 COG2890 HemK Methylase of poly 99.5 7E-14 1.5E-18 137.6 11.2 109 264-380 77-186 (280)
27 TIGR00536 hemK_fam HemK family 99.5 2.5E-13 5.4E-18 134.3 14.7 120 252-381 71-193 (284)
28 COG2520 Predicted methyltransf 99.5 1.1E-12 2.4E-17 130.8 16.9 177 212-404 109-289 (341)
29 TIGR00308 TRM1 tRNA(guanine-26 99.4 8.8E-13 1.9E-17 134.4 14.1 136 266-406 4-148 (374)
30 PRK01544 bifunctional N5-gluta 99.4 3.6E-13 7.9E-18 142.9 11.4 122 251-382 71-218 (506)
31 COG4123 Predicted O-methyltran 99.4 9.6E-13 2.1E-17 125.6 12.8 123 298-428 44-187 (248)
32 TIGR00080 pimt protein-L-isoas 99.4 4.4E-12 9.6E-17 120.3 12.8 129 267-403 44-175 (215)
33 TIGR03534 RF_mod_PrmC protein- 99.4 2.1E-11 4.5E-16 117.8 16.9 111 265-382 55-166 (251)
34 PF13659 Methyltransf_26: Meth 99.4 2.3E-12 5E-17 109.6 8.7 81 299-382 1-82 (117)
35 PF12847 Methyltransf_18: Meth 99.3 7.7E-12 1.7E-16 105.4 11.0 104 298-404 1-110 (112)
36 KOG2904 Predicted methyltransf 99.3 6E-12 1.3E-16 119.5 10.4 122 252-381 103-233 (328)
37 PRK14967 putative methyltransf 99.3 3.9E-11 8.4E-16 114.5 16.1 106 267-381 6-112 (223)
38 PRK15001 SAM-dependent 23S rib 99.3 4E-11 8.7E-16 122.3 17.1 134 267-404 198-339 (378)
39 PRK09489 rsmC 16S ribosomal RN 99.3 5.8E-11 1.3E-15 120.1 17.0 142 265-421 164-314 (342)
40 COG2813 RsmC 16S RNA G1207 met 99.3 3.9E-11 8.4E-16 117.0 14.9 130 266-403 127-265 (300)
41 TIGR00446 nop2p NOL1/NOP2/sun 99.3 4.3E-11 9.4E-16 117.1 15.0 83 297-383 70-153 (264)
42 PRK09328 N5-glutamine S-adenos 99.3 2.5E-11 5.5E-16 119.0 13.4 111 265-382 75-187 (275)
43 PF09445 Methyltransf_15: RNA 99.3 4.4E-12 9.5E-17 114.1 7.1 80 300-383 1-82 (163)
44 PRK14902 16S rRNA methyltransf 99.3 4.5E-11 9.9E-16 125.5 15.0 84 297-383 249-333 (444)
45 PF06325 PrmA: Ribosomal prote 99.3 1.8E-11 3.9E-16 120.8 10.7 144 266-423 128-272 (295)
46 PLN02672 methionine S-methyltr 99.3 2.7E-11 5.8E-16 136.6 13.4 115 264-381 83-214 (1082)
47 COG2264 PrmA Ribosomal protein 99.3 5.5E-11 1.2E-15 116.5 13.5 133 266-404 129-262 (300)
48 PRK14901 16S rRNA methyltransf 99.3 3.1E-11 6.7E-16 126.3 11.6 84 297-383 251-338 (434)
49 PF13847 Methyltransf_31: Meth 99.2 7.8E-11 1.7E-15 105.4 11.6 104 298-404 3-109 (152)
50 COG2242 CobL Precorrin-6B meth 99.2 2.5E-10 5.5E-15 103.9 14.6 101 297-403 33-134 (187)
51 PRK14903 16S rRNA methyltransf 99.2 1E-10 2.2E-15 122.0 13.4 84 297-383 236-320 (431)
52 PRK00517 prmA ribosomal protei 99.2 3.8E-10 8.3E-15 109.6 16.5 126 266-404 86-212 (250)
53 KOG3420 Predicted RNA methylas 99.2 5.4E-11 1.2E-15 102.8 8.8 125 281-421 29-159 (185)
54 TIGR00406 prmA ribosomal prote 99.2 4E-10 8.7E-15 111.7 16.3 147 266-424 126-273 (288)
55 TIGR00138 gidB 16S rRNA methyl 99.2 3.3E-10 7.1E-15 104.6 14.3 100 298-404 42-141 (181)
56 PRK00121 trmB tRNA (guanine-N( 99.2 2.3E-10 5E-15 107.5 13.1 123 298-428 40-174 (202)
57 PRK14904 16S rRNA methyltransf 99.2 2.6E-10 5.6E-15 119.8 14.4 108 297-414 249-382 (445)
58 PRK00107 gidB 16S rRNA methylt 99.2 3.6E-10 7.7E-15 104.8 13.4 101 296-403 43-143 (187)
59 PRK00377 cbiT cobalt-precorrin 99.2 7.2E-10 1.6E-14 103.8 15.4 104 297-403 39-144 (198)
60 PRK08287 cobalt-precorrin-6Y C 99.2 1.2E-09 2.6E-14 101.2 16.3 101 297-404 30-130 (187)
61 PF01170 UPF0020: Putative RNA 99.2 2E-10 4.4E-15 105.8 10.9 104 297-404 27-149 (179)
62 TIGR02469 CbiT precorrin-6Y C5 99.2 1.2E-09 2.6E-14 93.3 14.7 103 298-404 19-121 (124)
63 TIGR00537 hemK_rel_arch HemK-r 99.1 1.2E-09 2.7E-14 100.5 15.6 75 298-381 19-93 (179)
64 PRK07402 precorrin-6B methylas 99.1 9.5E-10 2.1E-14 102.7 14.7 103 297-404 39-141 (196)
65 PRK10901 16S rRNA methyltransf 99.1 5.6E-10 1.2E-14 116.6 14.5 82 297-382 243-325 (427)
66 PRK13944 protein-L-isoaspartat 99.1 1.3E-09 2.8E-14 102.6 14.4 111 286-403 58-171 (205)
67 TIGR00091 tRNA (guanine-N(7)-) 99.1 6.4E-10 1.4E-14 103.8 12.2 121 298-426 16-148 (194)
68 PHA03412 putative methyltransf 99.1 8.2E-10 1.8E-14 104.8 12.5 74 298-381 49-125 (241)
69 TIGR01177 conserved hypothetic 99.1 9.2E-10 2E-14 111.2 13.8 102 297-404 181-294 (329)
70 smart00650 rADc Ribosomal RNA 99.1 1.1E-09 2.3E-14 100.0 12.7 98 298-404 13-112 (169)
71 TIGR00563 rsmB ribosomal RNA s 99.1 1E-09 2.2E-14 114.7 14.1 111 297-414 237-373 (426)
72 PTZ00338 dimethyladenosine tra 99.1 1.2E-09 2.7E-14 108.2 12.7 100 287-393 23-124 (294)
73 COG2226 UbiE Methylase involve 99.1 2E-09 4.4E-14 102.8 13.2 75 298-376 51-125 (238)
74 PRK13942 protein-L-isoaspartat 99.0 5.6E-09 1.2E-13 98.9 14.0 79 297-379 75-154 (212)
75 PLN02781 Probable caffeoyl-CoA 99.0 5.5E-09 1.2E-13 100.4 12.8 115 286-404 57-177 (234)
76 PHA03411 putative methyltransf 99.0 2.5E-09 5.5E-14 103.7 10.3 75 298-382 64-138 (279)
77 PRK14968 putative methyltransf 99.0 1.3E-08 2.7E-13 93.8 14.5 89 286-381 13-101 (188)
78 PRK00274 ksgA 16S ribosomal RN 99.0 7.9E-09 1.7E-13 101.6 13.3 102 280-393 26-127 (272)
79 PRK04457 spermidine synthase; 98.9 2.4E-08 5.3E-13 97.5 16.0 123 297-426 65-194 (262)
80 PRK00312 pcm protein-L-isoaspa 98.9 1.8E-08 3.8E-13 95.3 14.5 98 297-404 77-174 (212)
81 PRK13943 protein-L-isoaspartat 98.9 1.8E-08 3.8E-13 101.1 14.7 99 297-402 79-178 (322)
82 PRK12335 tellurite resistance 98.9 1.2E-08 2.7E-13 101.0 13.4 126 267-402 88-220 (287)
83 PRK11036 putative S-adenosyl-L 98.9 9.6E-09 2.1E-13 100.0 12.2 103 298-404 44-148 (255)
84 PRK15451 tRNA cmo(5)U34 methyl 98.9 2.5E-08 5.5E-13 96.6 14.2 105 295-404 53-163 (247)
85 COG0116 Predicted N6-adenine-s 98.9 5.3E-09 1.2E-13 105.3 9.4 96 282-380 173-309 (381)
86 PLN02476 O-methyltransferase 98.9 1.7E-08 3.6E-13 98.8 12.6 120 279-403 101-226 (278)
87 PLN02585 magnesium protoporphy 98.9 2.2E-08 4.8E-13 100.1 13.8 109 298-420 144-259 (315)
88 TIGR02752 MenG_heptapren 2-hep 98.9 7.1E-08 1.5E-12 92.2 16.8 103 297-403 44-149 (231)
89 PRK14896 ksgA 16S ribosomal RN 98.9 2E-08 4.3E-13 98.0 13.0 95 280-386 13-107 (258)
90 PLN02244 tocopherol O-methyltr 98.9 4.2E-08 9.1E-13 99.5 15.8 118 283-404 96-222 (340)
91 PRK11207 tellurite resistance 98.9 2.8E-08 6E-13 93.0 13.4 96 298-400 30-129 (197)
92 PRK04266 fibrillarin; Provisio 98.9 3.8E-08 8.1E-13 94.1 14.2 101 297-403 71-174 (226)
93 PRK00811 spermidine synthase; 98.9 3E-08 6.5E-13 98.0 13.9 128 297-426 75-211 (283)
94 PLN02233 ubiquinone biosynthes 98.9 3.1E-08 6.8E-13 96.8 13.6 79 297-376 72-151 (261)
95 COG2227 UbiG 2-polyprenyl-3-me 98.9 6.7E-09 1.5E-13 98.0 8.3 94 298-404 59-160 (243)
96 PRK11727 23S rRNA mA1618 methy 98.9 1E-08 2.3E-13 102.4 10.0 83 298-381 114-200 (321)
97 PF01209 Ubie_methyltran: ubiE 98.8 1.3E-08 2.7E-13 97.8 9.4 101 297-404 46-153 (233)
98 PRK10742 putative methyltransf 98.8 2.9E-08 6.2E-13 94.9 11.6 83 297-381 85-175 (250)
99 PLN02396 hexaprenyldihydroxybe 98.8 4.1E-08 8.9E-13 98.5 13.3 96 298-404 131-234 (322)
100 TIGR02021 BchM-ChlM magnesium 98.8 4E-08 8.6E-13 93.3 12.0 84 285-376 38-125 (219)
101 TIGR00477 tehB tellurite resis 98.8 7.6E-08 1.6E-12 89.9 12.8 98 298-403 30-132 (195)
102 KOG1270 Methyltransferases [Co 98.8 2.1E-08 4.5E-13 95.4 9.0 93 299-404 90-194 (282)
103 PRK05134 bifunctional 3-demeth 98.8 8.7E-08 1.9E-12 91.7 13.5 126 273-404 21-150 (233)
104 COG2518 Pcm Protein-L-isoaspar 98.8 1.1E-07 2.3E-12 88.6 13.5 107 289-404 61-169 (209)
105 KOG2730 Methylase [General fun 98.8 7.7E-09 1.7E-13 95.6 5.7 111 270-385 66-180 (263)
106 PRK14121 tRNA (guanine-N(7)-)- 98.8 6.7E-08 1.5E-12 98.5 12.9 104 298-404 122-234 (390)
107 TIGR03587 Pse_Me-ase pseudamin 98.8 3.9E-08 8.4E-13 92.6 10.1 74 293-376 38-111 (204)
108 PRK11933 yebU rRNA (cytosine-C 98.8 9E-08 2E-12 100.5 13.8 105 297-404 112-242 (470)
109 PRK10258 biotin biosynthesis p 98.8 1.5E-07 3.2E-12 91.3 14.4 96 298-404 42-139 (251)
110 PF01135 PCMT: Protein-L-isoas 98.8 3.9E-08 8.4E-13 92.7 9.8 111 287-404 59-172 (209)
111 TIGR00740 methyltransferase, p 98.8 2.3E-07 5E-12 89.3 15.4 104 296-404 51-160 (239)
112 PRK03612 spermidine synthase; 98.7 1E-07 2.2E-12 102.0 13.5 109 297-405 296-415 (521)
113 cd02440 AdoMet_MTases S-adenos 98.7 1.3E-07 2.8E-12 76.5 11.0 100 301-404 1-103 (107)
114 PRK01683 trans-aconitate 2-met 98.7 1.2E-07 2.6E-12 92.3 12.6 97 298-404 31-129 (258)
115 TIGR01983 UbiG ubiquinone bios 98.7 1.2E-07 2.6E-12 90.0 12.2 101 299-404 46-148 (224)
116 PRK11873 arsM arsenite S-adeno 98.7 1.8E-07 3.9E-12 91.8 13.3 104 296-404 75-182 (272)
117 PRK11783 rlmL 23S rRNA m(2)G24 98.7 1.8E-07 3.8E-12 103.6 14.7 83 297-381 189-314 (702)
118 PRK14103 trans-aconitate 2-met 98.7 1.1E-07 2.4E-12 92.5 11.5 95 298-404 29-125 (255)
119 COG2519 GCD14 tRNA(1-methylade 98.7 3.9E-07 8.5E-12 86.8 14.6 100 297-403 93-194 (256)
120 COG1041 Predicted DNA modifica 98.7 3.7E-08 8E-13 98.0 7.9 99 274-380 172-274 (347)
121 TIGR00755 ksgA dimethyladenosi 98.7 1.9E-07 4.1E-12 90.9 12.6 102 278-392 11-115 (253)
122 TIGR00417 speE spermidine synt 98.7 3.2E-07 7E-12 90.1 14.3 107 298-404 72-185 (270)
123 PRK01581 speE spermidine synth 98.7 3.5E-07 7.7E-12 92.2 14.0 109 296-404 148-267 (374)
124 PLN02336 phosphoethanolamine N 98.7 1.7E-07 3.6E-12 99.5 12.3 113 284-404 254-368 (475)
125 COG2521 Predicted archaeal met 98.7 1.2E-07 2.5E-12 88.7 9.6 159 262-428 103-270 (287)
126 PRK15068 tRNA mo(5)U34 methylt 98.7 2.9E-07 6.2E-12 92.7 13.2 101 298-404 122-225 (322)
127 PLN02366 spermidine synthase 98.6 6.5E-07 1.4E-11 89.4 15.0 129 297-427 90-227 (308)
128 PF13649 Methyltransf_25: Meth 98.6 1E-07 2.2E-12 79.0 7.8 70 302-376 1-73 (101)
129 TIGR00438 rrmJ cell division p 98.6 6.6E-07 1.4E-11 82.9 13.8 111 296-425 30-161 (188)
130 PRK11188 rrmJ 23S rRNA methylt 98.6 7.9E-07 1.7E-11 84.0 14.0 115 296-429 49-184 (209)
131 PTZ00098 phosphoethanolamine N 98.6 6.4E-07 1.4E-11 87.7 13.8 101 297-404 51-155 (263)
132 PF07021 MetW: Methionine bios 98.6 1.3E-07 2.7E-12 86.9 7.8 77 290-377 5-82 (193)
133 PLN02490 MPBQ/MSBQ methyltrans 98.6 5.9E-07 1.3E-11 90.6 13.3 99 298-403 113-213 (340)
134 KOG1540 Ubiquinone biosynthesi 98.6 9.2E-07 2E-11 83.9 12.7 100 298-403 100-213 (296)
135 PLN03075 nicotianamine synthas 98.6 1.3E-06 2.8E-11 86.2 14.3 104 298-404 123-232 (296)
136 TIGR02072 BioC biotin biosynth 98.5 1.6E-06 3.5E-11 82.5 14.5 114 283-404 18-134 (240)
137 PF02353 CMAS: Mycolic acid cy 98.5 5E-07 1.1E-11 88.8 11.1 113 285-404 47-165 (273)
138 PTZ00146 fibrillarin; Provisio 98.5 2.3E-06 4.9E-11 84.1 15.5 103 296-404 130-236 (293)
139 smart00828 PKS_MT Methyltransf 98.5 7.7E-07 1.7E-11 84.6 11.8 101 300-404 1-103 (224)
140 PF05401 NodS: Nodulation prot 98.5 4.4E-07 9.5E-12 83.6 9.4 69 299-376 44-112 (201)
141 PF08704 GCD14: tRNA methyltra 98.5 9.7E-07 2.1E-11 85.1 12.2 82 297-380 39-123 (247)
142 COG0030 KsgA Dimethyladenosine 98.5 1.5E-06 3.3E-11 83.9 13.3 102 286-394 16-119 (259)
143 PF03848 TehB: Tellurite resis 98.5 5.7E-07 1.2E-11 83.4 9.9 99 293-403 26-131 (192)
144 PRK11705 cyclopropane fatty ac 98.5 1.5E-06 3.2E-11 89.5 14.1 106 288-404 155-266 (383)
145 TIGR00452 methyltransferase, p 98.5 1.5E-06 3.3E-11 86.9 13.5 113 286-404 107-224 (314)
146 PF01596 Methyltransf_3: O-met 98.5 4.9E-07 1.1E-11 85.0 9.4 116 285-404 33-154 (205)
147 PRK07580 Mg-protoporphyrin IX 98.5 6.7E-07 1.4E-11 85.2 10.4 71 298-376 63-133 (230)
148 PF08241 Methyltransf_11: Meth 98.5 6.5E-07 1.4E-11 72.2 8.9 66 303-376 1-66 (95)
149 PRK11088 rrmA 23S rRNA methylt 98.5 1.5E-06 3.2E-11 85.4 13.0 84 284-376 70-157 (272)
150 TIGR03840 TMPT_Se_Te thiopurin 98.5 1.4E-06 3E-11 82.5 12.1 106 297-404 33-152 (213)
151 KOG1227 Putative methyltransfe 98.5 9.1E-08 2E-12 92.3 3.9 145 250-404 147-296 (351)
152 PRK06922 hypothetical protein; 98.5 1.5E-06 3.3E-11 93.3 13.3 78 298-379 418-496 (677)
153 KOG3191 Predicted N6-DNA-methy 98.5 3.8E-06 8.2E-11 75.9 13.4 76 299-380 44-120 (209)
154 COG0144 Sun tRNA and rRNA cyto 98.4 3.9E-06 8.4E-11 85.6 15.0 112 297-416 155-295 (355)
155 PRK00216 ubiE ubiquinone/menaq 98.4 4.6E-06 1E-10 79.5 14.6 103 298-403 51-156 (239)
156 COG2230 Cfa Cyclopropane fatty 98.4 1.8E-06 3.8E-11 84.3 11.5 81 289-376 61-143 (283)
157 PRK08317 hypothetical protein; 98.4 5.4E-06 1.2E-10 78.8 14.6 102 297-403 18-122 (241)
158 PRK05785 hypothetical protein; 98.4 1.5E-06 3.3E-11 83.1 10.6 79 287-378 40-118 (226)
159 smart00138 MeTrc Methyltransfe 98.4 1.4E-06 3.1E-11 85.2 10.7 129 271-404 67-241 (264)
160 TIGR02081 metW methionine bios 98.4 1.6E-06 3.5E-11 80.8 9.7 94 290-394 5-101 (194)
161 COG4122 Predicted O-methyltran 98.4 4.7E-06 1E-10 78.7 12.8 117 284-404 46-165 (219)
162 PF10294 Methyltransf_16: Puta 98.4 2.3E-06 4.9E-11 78.5 10.4 123 298-425 45-172 (173)
163 TIGR03438 probable methyltrans 98.4 6.7E-06 1.5E-10 82.1 14.5 111 291-404 56-176 (301)
164 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.4 1.9E-06 4.1E-11 85.2 10.3 131 275-415 64-225 (283)
165 KOG1271 Methyltransferases [Ge 98.4 3.3E-06 7.2E-11 76.3 10.5 77 284-362 47-129 (227)
166 PLN02823 spermine synthase 98.4 3.9E-06 8.5E-11 84.7 12.4 107 298-404 103-219 (336)
167 COG1867 TRM1 N2,N2-dimethylgua 98.4 2.2E-06 4.7E-11 85.6 10.2 121 279-406 35-155 (380)
168 PLN02336 phosphoethanolamine N 98.4 2.7E-06 5.8E-11 90.2 11.7 99 298-403 37-140 (475)
169 PF02005 TRM: N2,N2-dimethylgu 98.3 6.2E-07 1.3E-11 91.8 5.9 103 299-405 50-154 (377)
170 PRK00050 16S rRNA m(4)C1402 me 98.3 1.6E-06 3.5E-11 85.7 8.4 88 287-379 6-99 (296)
171 PRK13255 thiopurine S-methyltr 98.3 3.6E-06 7.8E-11 80.1 10.4 98 297-399 36-149 (218)
172 PLN02589 caffeoyl-CoA O-methyl 98.3 6.4E-06 1.4E-10 79.6 12.2 120 279-403 62-188 (247)
173 TIGR02716 C20_methyl_CrtF C-20 98.3 1.1E-05 2.3E-10 80.7 14.3 74 297-376 148-221 (306)
174 PRK06202 hypothetical protein; 98.3 2E-06 4.3E-11 82.4 8.4 75 298-379 60-138 (232)
175 KOG1499 Protein arginine N-met 98.3 1.7E-06 3.6E-11 85.9 7.8 74 298-376 60-133 (346)
176 PRK04148 hypothetical protein; 98.3 1.2E-05 2.6E-10 70.1 12.2 71 298-380 16-88 (134)
177 PF02390 Methyltransf_4: Putat 98.3 5.7E-06 1.2E-10 77.3 10.7 120 299-426 18-149 (195)
178 PF02384 N6_Mtase: N-6 DNA Met 98.3 2.6E-06 5.6E-11 85.3 8.8 105 275-383 26-138 (311)
179 COG4106 Tam Trans-aconitate me 98.3 3.5E-06 7.7E-11 78.2 8.8 97 298-404 30-128 (257)
180 TIGR02987 met_A_Alw26 type II 98.3 3.5E-06 7.5E-11 90.6 10.2 105 275-383 4-125 (524)
181 COG4076 Predicted RNA methylas 98.3 2E-06 4.2E-11 78.0 6.8 69 299-375 33-101 (252)
182 TIGR01934 MenG_MenH_UbiE ubiqu 98.2 2E-05 4.4E-10 74.2 13.3 99 298-403 39-141 (223)
183 PF08242 Methyltransf_12: Meth 98.2 3.1E-07 6.7E-12 75.7 0.1 72 303-377 1-73 (99)
184 KOG1500 Protein arginine N-met 98.2 5E-06 1.1E-10 81.5 8.2 76 298-379 177-252 (517)
185 KOG2078 tRNA modification enzy 98.1 4E-06 8.6E-11 84.7 6.7 130 229-364 181-312 (495)
186 KOG0820 Ribosomal RNA adenine 98.1 3E-05 6.5E-10 74.4 11.2 115 266-389 28-142 (315)
187 cd00315 Cyt_C5_DNA_methylase C 98.1 1.3E-05 2.8E-10 79.0 8.6 70 301-380 2-72 (275)
188 PF05185 PRMT5: PRMT5 arginine 98.0 2.9E-05 6.3E-10 81.4 10.9 98 299-400 187-292 (448)
189 PF00398 RrnaAD: Ribosomal RNA 98.0 4E-05 8.6E-10 75.0 11.1 103 281-393 15-119 (262)
190 KOG1661 Protein-L-isoaspartate 98.0 4.9E-05 1.1E-09 70.4 10.8 114 286-403 70-192 (237)
191 PF13489 Methyltransf_23: Meth 98.0 1.7E-05 3.8E-10 70.5 7.9 102 287-404 11-114 (161)
192 PF01564 Spermine_synth: Sperm 97.8 0.00012 2.5E-09 71.0 10.7 109 296-404 74-190 (246)
193 PF08123 DOT1: Histone methyla 97.8 6.7E-05 1.5E-09 70.6 8.6 112 297-412 41-163 (205)
194 PRK13256 thiopurine S-methyltr 97.8 9.3E-05 2E-09 70.5 9.5 102 298-404 43-163 (226)
195 COG0220 Predicted S-adenosylme 97.8 0.00027 5.8E-09 67.5 12.1 102 300-404 50-163 (227)
196 TIGR01444 fkbM_fam methyltrans 97.8 7.6E-05 1.6E-09 65.5 7.7 59 301-362 1-59 (143)
197 PF08003 Methyltransf_9: Prote 97.8 0.00014 3.1E-09 71.4 9.7 74 298-376 115-188 (315)
198 PF13679 Methyltransf_32: Meth 97.7 0.00033 7.1E-09 61.9 11.1 104 298-405 25-133 (141)
199 TIGR00478 tly hemolysin TlyA f 97.7 0.00038 8.2E-09 66.6 11.9 54 283-337 58-113 (228)
200 COG3897 Predicted methyltransf 97.7 0.00015 3.3E-09 66.5 8.5 95 298-404 79-178 (218)
201 PF04816 DUF633: Family of unk 97.7 0.00035 7.5E-09 65.8 11.2 87 302-395 1-87 (205)
202 PF05724 TPMT: Thiopurine S-me 97.7 5.9E-05 1.3E-09 71.7 6.0 77 297-375 36-121 (218)
203 COG4976 Predicted methyltransf 97.7 1.4E-05 3.1E-10 74.8 1.5 99 299-407 126-227 (287)
204 PF01861 DUF43: Protein of unk 97.7 0.00072 1.6E-08 64.4 12.9 114 298-422 44-162 (243)
205 PF05971 Methyltransf_10: Prot 97.7 0.00031 6.8E-09 69.4 10.6 82 299-382 103-189 (299)
206 KOG1663 O-methyltransferase [S 97.6 0.00077 1.7E-08 63.5 11.9 111 290-404 66-182 (237)
207 KOG2915 tRNA(1-methyladenosine 97.6 0.0007 1.5E-08 65.2 11.7 82 297-380 104-187 (314)
208 COG4262 Predicted spermidine s 97.6 0.00056 1.2E-08 68.2 11.4 141 286-427 277-428 (508)
209 KOG1541 Predicted protein carb 97.6 0.00024 5.2E-09 66.3 7.9 68 299-376 51-118 (270)
210 COG0421 SpeE Spermidine syntha 97.5 0.0015 3.2E-08 64.5 13.4 104 300-404 78-189 (282)
211 PRK01544 bifunctional N5-gluta 97.5 0.00095 2.1E-08 71.4 12.3 104 298-404 347-461 (506)
212 PHA01634 hypothetical protein 97.5 0.00042 9.1E-09 59.2 7.6 74 298-379 28-101 (156)
213 KOG2899 Predicted methyltransf 97.5 0.00016 3.4E-09 68.5 5.2 47 298-344 58-104 (288)
214 KOG1122 tRNA and rRNA cytosine 97.5 0.00091 2E-08 68.0 10.7 115 297-419 240-381 (460)
215 PF00145 DNA_methylase: C-5 cy 97.4 0.00044 9.6E-09 69.1 8.6 91 301-404 2-109 (335)
216 PF01555 N6_N4_Mtase: DNA meth 97.4 0.00033 7.1E-09 66.0 6.7 42 297-340 190-231 (231)
217 KOG4300 Predicted methyltransf 97.4 0.0021 4.6E-08 59.6 11.2 100 301-404 79-182 (252)
218 PRK11524 putative methyltransf 97.3 0.00054 1.2E-08 67.8 7.5 57 286-344 195-252 (284)
219 COG2384 Predicted SAM-dependen 97.3 0.0017 3.6E-08 61.0 10.1 98 290-394 8-105 (226)
220 TIGR00675 dcm DNA-methyltransf 97.3 0.0006 1.3E-08 68.6 7.6 68 302-379 1-68 (315)
221 PF04445 SAM_MT: Putative SAM- 97.2 0.00057 1.2E-08 65.2 6.1 77 300-379 77-160 (234)
222 TIGR00006 S-adenosyl-methyltra 97.2 0.0014 3E-08 65.2 9.1 90 286-379 6-101 (305)
223 KOG2671 Putative RNA methylase 97.2 0.00032 7E-09 69.4 4.1 82 295-380 205-294 (421)
224 KOG3010 Methyltransferase [Gen 97.2 0.001 2.2E-08 63.1 7.2 53 287-341 22-74 (261)
225 PF03291 Pox_MCEL: mRNA cappin 97.2 0.0013 2.8E-08 66.4 8.6 103 298-404 62-185 (331)
226 PF11599 AviRa: RRNA methyltra 97.2 0.0038 8.3E-08 58.3 10.7 123 282-404 33-213 (246)
227 PF02527 GidB: rRNA small subu 97.1 0.0015 3.3E-08 60.4 7.7 93 301-401 51-144 (184)
228 KOG1253 tRNA methyltransferase 97.1 0.00033 7.1E-09 72.5 3.4 103 298-405 109-216 (525)
229 COG0270 Dcm Site-specific DNA 97.1 0.0026 5.6E-08 64.4 9.6 94 300-404 4-115 (328)
230 PRK13699 putative methylase; P 97.0 0.0021 4.5E-08 61.6 7.9 56 287-344 151-207 (227)
231 PRK11760 putative 23S rRNA C24 96.9 0.0048 1E-07 61.9 9.7 69 297-378 210-278 (357)
232 PF00891 Methyltransf_2: O-met 96.9 0.012 2.6E-07 56.6 11.8 65 298-376 100-164 (241)
233 PRK10611 chemotaxis methyltran 96.8 0.0071 1.5E-07 59.8 9.6 130 270-404 89-261 (287)
234 COG0357 GidB Predicted S-adeno 96.7 0.0043 9.3E-08 58.6 7.1 73 299-376 68-141 (215)
235 COG0286 HsdM Type I restrictio 96.7 0.0077 1.7E-07 64.2 9.6 101 275-381 166-275 (489)
236 KOG1975 mRNA cap methyltransfe 96.7 0.0036 7.8E-08 61.8 6.3 83 292-375 111-201 (389)
237 COG3963 Phospholipid N-methylt 96.5 0.022 4.9E-07 51.2 9.9 111 283-403 35-154 (194)
238 PRK10458 DNA cytosine methylas 96.5 0.013 2.8E-07 61.9 9.7 75 299-379 88-178 (467)
239 PRK00536 speE spermidine synth 96.5 0.071 1.5E-06 52.1 14.1 99 297-404 71-170 (262)
240 PF12147 Methyltransf_20: Puta 96.4 0.029 6.4E-07 55.0 10.7 99 299-403 136-248 (311)
241 PF01269 Fibrillarin: Fibrilla 96.3 0.083 1.8E-06 50.0 12.6 102 297-404 72-177 (229)
242 KOG2361 Predicted methyltransf 96.2 0.013 2.7E-07 55.9 6.8 98 301-404 74-182 (264)
243 KOG2198 tRNA cytosine-5-methyl 96.2 0.042 9E-07 55.5 10.5 112 296-415 153-302 (375)
244 PF07091 FmrO: Ribosomal RNA m 96.1 0.037 8E-07 53.3 9.2 117 285-412 92-215 (251)
245 PF05219 DREV: DREV methyltran 96.0 0.078 1.7E-06 51.3 11.4 105 282-403 75-186 (265)
246 COG1568 Predicted methyltransf 96.0 0.037 7.9E-07 53.7 8.7 117 298-424 152-273 (354)
247 KOG1501 Arginine N-methyltrans 95.9 0.012 2.6E-07 60.2 5.5 58 301-361 69-126 (636)
248 KOG4058 Uncharacterized conser 95.7 0.026 5.6E-07 49.7 6.0 78 281-363 57-134 (199)
249 PLN02232 ubiquinone biosynthes 95.7 0.043 9.4E-07 49.4 7.7 75 326-404 1-80 (160)
250 PF09243 Rsm22: Mitochondrial 95.6 0.051 1.1E-06 53.5 8.5 64 281-344 14-80 (274)
251 PF01728 FtsJ: FtsJ-like methy 95.6 0.0091 2E-07 54.7 2.8 79 286-378 7-99 (181)
252 PF13578 Methyltransf_24: Meth 95.4 0.005 1.1E-07 51.2 0.5 74 303-379 1-78 (106)
253 PF01795 Methyltransf_5: MraW 95.4 0.019 4.1E-07 57.2 4.6 89 287-379 7-102 (310)
254 COG1189 Predicted rRNA methyla 95.2 0.1 2.2E-06 49.8 8.6 103 283-395 62-168 (245)
255 COG0293 FtsJ 23S rRNA methylas 95.0 0.62 1.4E-05 43.7 13.2 71 296-380 43-121 (205)
256 COG1889 NOP1 Fibrillarin-like 95.0 0.61 1.3E-05 43.5 12.8 112 297-413 75-188 (231)
257 KOG3201 Uncharacterized conser 94.7 0.048 1E-06 48.9 4.7 127 298-429 29-160 (201)
258 PF05891 Methyltransf_PK: AdoM 94.6 0.09 1.9E-06 49.6 6.5 139 299-445 56-209 (218)
259 PF01739 CheR: CheR methyltran 94.3 0.14 3E-06 47.9 7.2 125 275-404 3-174 (196)
260 COG0500 SmtA SAM-dependent met 94.3 0.89 1.9E-05 38.0 11.8 99 302-404 52-154 (257)
261 PF06080 DUF938: Protein of un 94.2 0.23 5E-06 46.5 8.3 88 286-376 12-108 (204)
262 TIGR03439 methyl_EasF probable 94.2 0.38 8.1E-06 48.5 10.4 86 275-363 51-144 (319)
263 PF03059 NAS: Nicotianamine sy 94.1 0.7 1.5E-05 45.5 11.8 101 300-403 122-228 (276)
264 COG2961 ComJ Protein involved 93.8 1.1 2.5E-05 43.0 12.1 133 282-428 74-215 (279)
265 COG3129 Predicted SAM-dependen 93.8 0.23 5E-06 47.1 7.3 82 298-380 78-163 (292)
266 PF04378 RsmJ: Ribosomal RNA s 93.6 0.29 6.3E-06 47.3 8.0 130 284-427 45-183 (245)
267 TIGR00497 hsdM type I restrict 93.3 0.41 8.9E-06 51.3 9.5 106 274-381 194-304 (501)
268 PF02086 MethyltransfD12: D12 93.1 0.1 2.2E-06 50.5 4.1 51 287-339 7-59 (260)
269 KOG2940 Predicted methyltransf 92.7 0.22 4.7E-06 47.2 5.4 85 285-376 59-143 (325)
270 COG0275 Predicted S-adenosylme 92.7 0.59 1.3E-05 46.2 8.7 89 286-378 9-104 (314)
271 COG0863 DNA modification methy 92.6 0.4 8.6E-06 47.3 7.7 48 295-344 219-266 (302)
272 COG1064 AdhP Zn-dependent alco 92.5 0.86 1.9E-05 46.1 9.8 95 296-404 164-259 (339)
273 KOG3115 Methyltransferase-like 91.9 1.5 3.2E-05 41.1 9.6 106 299-404 61-182 (249)
274 KOG3924 Putative protein methy 91.8 0.49 1.1E-05 48.3 7.1 104 297-401 191-305 (419)
275 COG1352 CheR Methylase of chem 91.6 0.47 1E-05 46.5 6.5 130 270-404 64-240 (268)
276 PF10237 N6-adenineMlase: Prob 91.0 6.3 0.00014 35.7 12.8 107 282-404 9-123 (162)
277 PF07279 DUF1442: Protein of u 90.5 3.1 6.7E-05 39.3 10.6 102 298-404 41-147 (218)
278 KOG1924 RhoA GTPase effector D 89.4 0.42 9.1E-06 52.3 4.4 13 332-344 900-912 (1102)
279 KOG2651 rRNA adenine N-6-methy 89.3 0.85 1.9E-05 46.4 6.2 60 279-340 135-194 (476)
280 PF06962 rRNA_methylase: Putat 89.0 1 2.2E-05 39.7 5.8 54 324-379 1-55 (140)
281 KOG1596 Fibrillarin and relate 88.3 5.9 0.00013 38.1 10.6 82 296-382 154-238 (317)
282 COG1063 Tdh Threonine dehydrog 87.3 1.9 4.2E-05 43.9 7.6 98 298-404 168-269 (350)
283 KOG3987 Uncharacterized conser 87.0 0.18 3.8E-06 47.1 -0.2 58 281-340 94-152 (288)
284 KOG0024 Sorbitol dehydrogenase 86.3 1.4 3.1E-05 44.0 5.7 98 296-403 167-272 (354)
285 KOG2920 Predicted methyltransf 85.5 1 2.2E-05 44.2 4.1 38 298-336 116-153 (282)
286 PRK01747 mnmC bifunctional tRN 83.2 4.4 9.6E-05 45.0 8.6 106 299-404 58-205 (662)
287 PRK11524 putative methyltransf 82.6 1.6 3.5E-05 43.1 4.4 53 352-404 8-79 (284)
288 PRK13699 putative methylase; P 81.1 1.8 4E-05 41.3 4.0 28 354-381 3-31 (227)
289 COG1062 AdhC Zn-dependent alco 80.2 3.8 8.3E-05 41.3 5.9 44 297-340 184-228 (366)
290 KOG2352 Predicted spermine/spe 80.1 1.3 2.8E-05 46.5 2.7 102 299-403 296-414 (482)
291 KOG2793 Putative N2,N2-dimethy 79.9 5.5 0.00012 38.6 6.7 44 299-344 87-130 (248)
292 PF02254 TrkA_N: TrkA-N domain 79.5 9.9 0.00021 31.5 7.6 88 306-403 3-95 (116)
293 KOG2360 Proliferation-associat 79.4 4.1 8.8E-05 41.7 5.9 81 298-381 213-295 (413)
294 PF05050 Methyltransf_21: Meth 79.3 5.2 0.00011 35.1 6.1 55 304-360 1-61 (167)
295 KOG0919 C-5 cytosine-specific 78.8 0.98 2.1E-05 43.2 1.2 71 300-379 4-78 (338)
296 PRK09880 L-idonate 5-dehydroge 77.4 18 0.00039 36.3 10.1 96 298-404 169-266 (343)
297 KOG2912 Predicted DNA methylas 77.1 5.4 0.00012 39.8 5.8 74 303-380 107-188 (419)
298 KOG3178 Hydroxyindole-O-methyl 76.0 6.4 0.00014 39.8 6.1 88 300-404 179-275 (342)
299 PLN03209 translocon at the inn 75.5 33 0.00071 37.5 11.8 106 298-405 79-208 (576)
300 PF04989 CmcI: Cephalosporin h 75.2 7.5 0.00016 36.6 6.0 103 298-404 32-146 (206)
301 PF07757 AdoMet_MTase: Predict 74.5 3.9 8.4E-05 34.3 3.5 31 299-331 59-89 (112)
302 KOG0821 Predicted ribosomal RN 74.4 34 0.00073 32.6 10.0 115 284-403 34-163 (326)
303 cd08283 FDH_like_1 Glutathione 73.4 7.1 0.00015 40.0 6.1 45 297-341 183-228 (386)
304 KOG1709 Guanidinoacetate methy 73.3 21 0.00046 33.9 8.4 77 297-378 100-177 (271)
305 KOG0022 Alcohol dehydrogenase, 72.2 7.8 0.00017 38.8 5.6 45 296-340 190-235 (375)
306 KOG3350 Uncharacterized conser 72.1 75 0.0016 29.3 11.2 120 281-424 56-184 (217)
307 COG1743 Adenine-specific DNA m 71.1 4.2 9E-05 45.1 3.7 43 298-342 90-132 (875)
308 PF04672 Methyltransf_19: S-ad 70.3 15 0.00032 36.0 7.0 101 300-404 70-189 (267)
309 PRK15181 Vi polysaccharide bio 70.1 24 0.00053 35.5 9.0 107 298-406 14-142 (348)
310 KOG2352 Predicted spermine/spe 69.6 33 0.00071 36.4 9.7 75 295-376 44-120 (482)
311 KOG4589 Cell division protein 69.4 7.3 0.00016 36.1 4.3 69 296-378 67-144 (232)
312 PRK12826 3-ketoacyl-(acyl-carr 68.3 84 0.0018 29.3 11.9 75 299-379 6-92 (251)
313 PRK12429 3-hydroxybutyrate deh 67.3 94 0.002 29.1 12.1 75 299-378 4-89 (258)
314 PF10354 DUF2431: Domain of un 67.1 57 0.0012 29.5 9.8 129 307-442 3-159 (166)
315 PLN00141 Tic62-NAD(P)-related 65.4 69 0.0015 30.4 10.7 97 299-405 17-132 (251)
316 COG1086 Predicted nucleoside-d 65.3 85 0.0018 34.1 11.9 119 291-415 243-385 (588)
317 PF03141 Methyltransf_29: Puta 65.1 12 0.00026 39.7 5.5 20 300-319 119-138 (506)
318 TIGR03451 mycoS_dep_FDH mycoth 64.6 24 0.00053 35.6 7.7 96 297-404 175-276 (358)
319 PF00107 ADH_zinc_N: Zinc-bind 63.7 10 0.00023 31.9 4.1 84 308-404 1-89 (130)
320 PF02719 Polysacc_synt_2: Poly 63.5 28 0.00061 34.6 7.5 105 306-414 4-136 (293)
321 PLN02896 cinnamyl-alcohol dehy 63.3 81 0.0018 31.6 11.3 75 298-378 9-87 (353)
322 KOG3045 Predicted RNA methylas 62.6 26 0.00057 34.2 6.8 115 288-430 171-286 (325)
323 KOG1201 Hydroxysteroid 17-beta 62.6 61 0.0013 32.3 9.6 59 298-363 37-98 (300)
324 TIGR00571 dam DNA adenine meth 62.2 14 0.00029 36.2 5.1 46 287-336 13-59 (266)
325 PF02636 Methyltransf_28: Puta 61.8 15 0.00032 35.5 5.3 44 300-343 20-71 (252)
326 PF05575 V_cholerae_RfbT: Vibr 60.4 11 0.00024 34.1 3.7 58 288-345 69-126 (286)
327 cd08230 glucose_DH Glucose deh 59.8 61 0.0013 32.6 9.6 94 298-404 172-269 (355)
328 TIGR03589 PseB UDP-N-acetylglu 59.6 68 0.0015 31.9 9.8 100 299-406 4-126 (324)
329 COG3392 Adenine-specific DNA m 59.4 8.4 0.00018 37.5 2.9 35 298-334 27-61 (330)
330 PRK11908 NAD-dependent epimera 58.9 37 0.0008 34.0 7.8 94 301-406 3-119 (347)
331 KOG1269 SAM-dependent methyltr 58.3 11 0.00025 38.6 3.9 75 296-374 108-182 (364)
332 PLN02650 dihydroflavonol-4-red 57.9 76 0.0016 31.8 9.9 75 299-376 5-83 (351)
333 PLN02662 cinnamyl-alcohol dehy 57.4 82 0.0018 30.9 10.0 105 299-406 4-128 (322)
334 COG0338 Dam Site-specific DNA 57.2 15 0.00032 36.2 4.3 53 352-404 156-226 (274)
335 KOG1562 Spermidine synthase [A 57.0 12 0.00027 37.0 3.7 106 298-403 121-234 (337)
336 cd00423 Pterin_binding Pterin 56.5 10 0.00022 36.9 3.1 45 265-310 3-48 (258)
337 COG0541 Ffh Signal recognition 55.8 53 0.0011 34.5 8.2 74 325-404 133-220 (451)
338 PRK10669 putative cation:proto 55.2 46 0.001 36.1 8.3 87 306-402 422-513 (558)
339 COG0604 Qor NADPH:quinone redu 53.7 48 0.001 33.4 7.6 97 297-404 141-241 (326)
340 PRK07066 3-hydroxybutyryl-CoA 53.0 78 0.0017 31.9 8.9 96 300-404 8-118 (321)
341 KOG1098 Putative SAM-dependent 52.1 23 0.00051 38.5 5.0 39 295-333 41-80 (780)
342 PRK07904 short chain dehydroge 52.0 58 0.0013 31.0 7.6 79 296-378 5-95 (253)
343 PLN02214 cinnamoyl-CoA reducta 52.0 1.8E+02 0.0039 29.1 11.5 103 298-406 9-128 (342)
344 PRK08945 putative oxoacyl-(acy 50.4 76 0.0016 29.8 8.1 59 298-361 11-72 (247)
345 PRK09424 pntA NAD(P) transhydr 49.7 33 0.00072 36.9 5.9 42 298-340 164-206 (509)
346 PRK03659 glutathione-regulated 49.4 73 0.0016 35.0 8.7 87 306-402 405-496 (601)
347 TIGR00571 dam DNA adenine meth 48.9 23 0.00049 34.6 4.2 29 352-381 155-183 (266)
348 PF05148 Methyltransf_8: Hypot 48.7 25 0.00054 33.3 4.1 117 287-430 62-180 (219)
349 PRK12475 thiamine/molybdopteri 48.6 64 0.0014 32.7 7.5 76 298-376 23-122 (338)
350 PLN00198 anthocyanidin reducta 48.3 1.5E+02 0.0032 29.5 10.2 74 299-376 9-86 (338)
351 PRK10904 DNA adenine methylase 48.2 20 0.00043 35.2 3.7 46 287-336 16-61 (271)
352 PRK06125 short chain dehydroge 47.9 1.3E+02 0.0028 28.4 9.3 75 299-378 7-89 (259)
353 PRK06182 short chain dehydroge 47.6 2.3E+02 0.0049 27.0 11.1 70 299-379 3-83 (273)
354 PRK06196 oxidoreductase; Provi 47.3 2.4E+02 0.0052 27.7 11.4 72 298-379 25-108 (315)
355 PF01234 NNMT_PNMT_TEMT: NNMT/ 46.7 32 0.00069 33.6 4.8 44 298-342 56-99 (256)
356 TIGR02356 adenyl_thiF thiazole 46.6 66 0.0014 29.9 6.8 33 298-331 20-54 (202)
357 COG1565 Uncharacterized conser 46.1 86 0.0019 32.1 7.8 46 299-344 78-131 (370)
358 cd08237 ribitol-5-phosphate_DH 45.9 36 0.00077 34.2 5.2 42 297-340 162-207 (341)
359 PRK07102 short chain dehydroge 45.2 1E+02 0.0022 28.8 8.1 73 301-378 3-84 (243)
360 PRK09496 trkA potassium transp 45.0 1.1E+02 0.0024 31.8 9.0 89 306-403 5-98 (453)
361 PRK06138 short chain dehydroge 45.0 2.6E+02 0.0056 26.0 11.4 74 299-379 5-90 (252)
362 PRK13753 dihydropteroate synth 44.4 20 0.00043 35.4 3.0 41 270-310 8-49 (279)
363 COG0569 TrkA K+ transport syst 44.3 1E+02 0.0022 29.3 7.8 67 306-380 5-76 (225)
364 COG1748 LYS9 Saccharopine dehy 44.3 1.8E+02 0.0038 30.3 9.9 90 300-404 2-97 (389)
365 PRK08324 short chain dehydroge 44.0 1.7E+02 0.0036 32.7 10.6 74 299-379 422-507 (681)
366 PRK11613 folP dihydropteroate 43.6 19 0.00042 35.6 2.8 41 270-310 21-62 (282)
367 CHL00194 ycf39 Ycf39; Provisio 43.0 1.9E+02 0.0042 28.4 10.0 89 305-405 5-110 (317)
368 PF05206 TRM13: Methyltransfer 42.8 57 0.0012 31.8 5.9 126 287-416 5-151 (259)
369 PRK05650 short chain dehydroge 42.8 2.8E+02 0.006 26.3 10.9 73 301-379 2-86 (270)
370 PLN02657 3,8-divinyl protochlo 42.6 1.2E+02 0.0025 31.3 8.5 102 298-405 59-182 (390)
371 TIGR01963 PHB_DH 3-hydroxybuty 42.6 2.8E+02 0.0061 25.7 11.9 72 301-378 3-86 (255)
372 TIGR01496 DHPS dihydropteroate 42.5 64 0.0014 31.4 6.2 38 270-307 6-44 (257)
373 PRK06197 short chain dehydroge 42.5 1.6E+02 0.0035 28.7 9.3 77 298-378 15-103 (306)
374 PF07942 N2227: N2227-like pro 42.4 71 0.0015 31.4 6.4 40 299-340 57-96 (270)
375 COG0338 Dam Site-specific DNA 42.2 14 0.00031 36.3 1.6 49 287-338 14-62 (274)
376 PRK08251 short chain dehydroge 41.9 1.8E+02 0.004 27.0 9.3 75 300-378 3-89 (248)
377 PLN02740 Alcohol dehydrogenase 41.5 48 0.0011 33.8 5.5 96 297-404 197-300 (381)
378 PF13460 NAD_binding_10: NADH( 41.4 1.5E+02 0.0034 26.1 8.3 88 305-406 3-99 (183)
379 PRK07109 short chain dehydroge 41.2 3.8E+02 0.0082 26.8 12.2 75 299-379 8-94 (334)
380 PRK09496 trkA potassium transp 41.1 3E+02 0.0065 28.6 11.6 115 278-403 210-329 (453)
381 TIGR01202 bchC 2-desacetyl-2-h 41.0 57 0.0012 32.2 5.8 87 298-404 144-231 (308)
382 TIGR02818 adh_III_F_hyde S-(hy 40.6 56 0.0012 33.1 5.8 44 297-340 184-228 (368)
383 PRK10309 galactitol-1-phosphat 40.6 1.2E+02 0.0025 30.3 8.1 97 297-404 159-260 (347)
384 cd01487 E1_ThiF_like E1_ThiF_l 40.3 1E+02 0.0023 27.9 6.9 30 302-332 2-33 (174)
385 PRK05565 fabG 3-ketoacyl-(acyl 39.9 3E+02 0.0066 25.3 11.3 75 299-379 5-92 (247)
386 PRK03562 glutathione-regulated 39.6 1.2E+02 0.0027 33.4 8.6 86 307-403 406-496 (621)
387 COG3087 FtsN Cell division pro 39.2 1.2E+02 0.0025 29.6 7.2 34 49-88 184-217 (264)
388 TIGR03366 HpnZ_proposed putati 38.8 60 0.0013 31.4 5.5 93 298-404 120-218 (280)
389 PRK05398 formyl-coenzyme A tra 38.4 80 0.0017 33.0 6.6 95 298-404 6-123 (416)
390 cd08281 liver_ADH_like1 Zinc-d 38.4 60 0.0013 32.9 5.6 96 297-404 190-290 (371)
391 PRK07832 short chain dehydroge 38.4 3.5E+02 0.0076 25.7 10.8 71 305-379 5-87 (272)
392 cd00739 DHPS DHPS subgroup of 38.3 69 0.0015 31.2 5.7 38 270-307 7-45 (257)
393 TIGR02632 RhaD_aldol-ADH rhamn 38.2 4E+02 0.0088 29.7 12.5 77 299-379 414-502 (676)
394 PRK08125 bifunctional UDP-gluc 38.0 1.2E+02 0.0027 33.6 8.4 96 298-405 314-432 (660)
395 PF05430 Methyltransf_30: S-ad 37.8 21 0.00045 30.8 1.7 52 352-403 32-88 (124)
396 cd01078 NAD_bind_H4MPT_DH NADP 37.4 2.6E+02 0.0057 25.4 9.3 43 298-342 27-72 (194)
397 KOG2675 Adenylate cyclase-asso 36.8 28 0.00061 36.2 2.7 12 114-125 333-344 (480)
398 TIGR02622 CDP_4_6_dhtase CDP-g 36.6 2.3E+02 0.005 28.3 9.5 101 299-405 4-127 (349)
399 PLN02583 cinnamoyl-CoA reducta 36.5 3.9E+02 0.0085 26.0 11.0 106 298-406 5-129 (297)
400 PRK07688 thiamine/molybdopteri 36.3 1.1E+02 0.0023 31.2 6.9 76 298-376 23-122 (339)
401 KOG1923 Rac1 GTPase effector F 35.8 65 0.0014 36.0 5.4 7 50-56 326-332 (830)
402 cd00757 ThiF_MoeB_HesA_family 35.8 92 0.002 29.5 6.1 75 299-376 21-117 (228)
403 PRK06194 hypothetical protein; 35.8 1.8E+02 0.0038 27.9 8.3 75 299-379 6-92 (287)
404 PF00809 Pterin_bind: Pterin b 35.5 46 0.00099 31.2 3.9 40 270-309 2-42 (210)
405 PLN02827 Alcohol dehydrogenase 34.9 76 0.0016 32.4 5.7 96 297-404 192-295 (378)
406 PRK05854 short chain dehydroge 34.7 2.6E+02 0.0056 27.6 9.4 77 298-378 13-101 (313)
407 PF01073 3Beta_HSD: 3-beta hyd 34.7 66 0.0014 31.6 5.0 94 306-407 3-118 (280)
408 PRK06129 3-hydroxyacyl-CoA deh 34.2 80 0.0017 31.3 5.6 90 308-404 9-116 (308)
409 PRK12939 short chain dehydroge 34.1 2.1E+02 0.0046 26.5 8.3 74 299-378 7-92 (250)
410 TIGR03201 dearomat_had 6-hydro 33.7 89 0.0019 31.3 6.0 43 297-340 165-208 (349)
411 PRK05867 short chain dehydroge 33.7 2.6E+02 0.0056 26.2 8.9 76 298-379 8-95 (253)
412 PRK07326 short chain dehydroge 33.4 2E+02 0.0042 26.6 7.9 73 299-378 6-90 (237)
413 PRK08293 3-hydroxybutyryl-CoA 33.3 85 0.0018 30.8 5.6 96 301-403 5-118 (287)
414 TIGR00518 alaDH alanine dehydr 33.0 2.2E+02 0.0047 29.3 8.7 41 299-340 167-208 (370)
415 PF04834 Adeno_E3_14_5: Early 33.0 28 0.00061 28.5 1.7 16 47-62 80-95 (97)
416 PRK08339 short chain dehydroge 32.8 2.4E+02 0.0051 26.9 8.5 76 298-378 7-93 (263)
417 PLN02668 indole-3-acetate carb 32.7 28 0.00061 36.0 2.1 20 299-318 64-83 (386)
418 PRK12828 short chain dehydroge 32.7 3.9E+02 0.0083 24.4 10.1 73 299-379 7-91 (239)
419 PLN02989 cinnamyl-alcohol dehy 32.4 1.8E+02 0.0039 28.6 7.8 78 298-378 4-85 (325)
420 PF01210 NAD_Gly3P_dh_N: NAD-d 32.3 97 0.0021 27.4 5.3 93 305-403 5-101 (157)
421 PRK08762 molybdopterin biosynt 32.2 1.2E+02 0.0026 31.1 6.7 33 298-331 134-168 (376)
422 COG5178 PRP8 U5 snRNP spliceos 32.1 37 0.0008 39.6 2.9 9 153-161 186-194 (2365)
423 TIGR03206 benzo_BadH 2-hydroxy 32.1 2.3E+02 0.005 26.3 8.3 76 299-379 3-89 (250)
424 cd08254 hydroxyacyl_CoA_DH 6-h 32.0 90 0.0019 30.6 5.6 43 297-340 164-207 (338)
425 PRK08328 hypothetical protein; 31.9 1.7E+02 0.0037 27.8 7.3 32 299-331 27-60 (231)
426 PRK07814 short chain dehydroge 31.9 2.5E+02 0.0053 26.6 8.5 75 298-378 9-95 (263)
427 PF10650 zf-C3H1: Putative zin 31.4 26 0.00057 20.9 0.9 16 52-67 1-21 (23)
428 cd05278 FDH_like Formaldehyde 31.3 1.1E+02 0.0024 30.2 6.2 44 297-340 166-210 (347)
429 cd08232 idonate-5-DH L-idonate 31.2 97 0.0021 30.6 5.7 42 298-339 165-207 (339)
430 PRK10904 DNA adenine methylase 31.2 66 0.0014 31.5 4.3 29 351-380 156-184 (271)
431 KOG0822 Protein kinase inhibit 31.1 99 0.0021 33.4 5.7 97 300-401 369-474 (649)
432 KOG2782 Putative SAM dependent 31.1 51 0.0011 31.4 3.2 56 287-342 30-87 (303)
433 PF00106 adh_short: short chai 31.0 3.1E+02 0.0067 23.5 8.4 72 305-380 5-90 (167)
434 PLN02427 UDP-apiose/xylose syn 30.9 1.2E+02 0.0026 30.8 6.5 74 299-376 14-92 (386)
435 PF03721 UDPG_MGDP_dh_N: UDP-g 30.8 47 0.001 30.5 3.0 32 308-339 7-40 (185)
436 PRK05993 short chain dehydroge 30.6 4.8E+02 0.01 24.9 11.4 68 299-378 4-84 (277)
437 PRK09291 short chain dehydroge 30.2 4.5E+02 0.0098 24.4 11.7 73 300-378 3-81 (257)
438 PRK07890 short chain dehydroge 30.0 2.4E+02 0.0051 26.4 7.9 74 299-378 5-90 (258)
439 cd01492 Aos1_SUMO Ubiquitin ac 29.9 2.3E+02 0.0051 26.1 7.6 75 299-377 21-117 (197)
440 cd08300 alcohol_DH_class_III c 29.8 1.1E+02 0.0024 30.8 6.0 43 297-339 185-228 (368)
441 PRK07666 fabG 3-ketoacyl-(acyl 29.8 3.1E+02 0.0066 25.3 8.6 75 299-379 7-93 (239)
442 PRK05599 hypothetical protein; 29.8 2.5E+02 0.0055 26.3 8.1 74 302-379 3-86 (246)
443 PLN00016 RNA-binding protein; 29.7 1E+02 0.0022 31.4 5.7 102 299-405 52-165 (378)
444 PRK06949 short chain dehydroge 29.6 3E+02 0.0064 25.7 8.6 76 298-379 8-95 (258)
445 cd08239 THR_DH_like L-threonin 29.6 1.1E+02 0.0024 30.3 5.8 44 297-340 162-206 (339)
446 cd08301 alcohol_DH_plants Plan 29.4 1.1E+02 0.0023 31.0 5.7 42 297-340 186-230 (369)
447 KOG2098 Predicted N6-adenine R 29.4 33 0.00072 35.8 1.9 28 353-380 372-399 (591)
448 PF02086 MethyltransfD12: D12 29.4 40 0.00086 32.2 2.4 31 352-382 159-189 (260)
449 PRK08217 fabG 3-ketoacyl-(acyl 29.3 2.8E+02 0.006 25.7 8.3 75 299-379 5-91 (253)
450 PRK05597 molybdopterin biosynt 29.2 1.6E+02 0.0035 30.0 7.0 76 298-376 27-124 (355)
451 PF05063 MT-A70: MT-A70 ; Int 29.2 29 0.00063 31.5 1.3 9 371-379 1-9 (176)
452 COG0771 MurD UDP-N-acetylmuram 28.8 2.1E+02 0.0046 30.3 7.8 111 299-423 7-131 (448)
453 cd05188 MDR Medium chain reduc 28.7 1.2E+02 0.0027 28.2 5.7 43 297-340 133-176 (271)
454 TIGR03253 oxalate_frc formyl-C 28.6 1.5E+02 0.0033 30.9 6.8 95 298-404 5-122 (415)
455 cd08285 NADP_ADH NADP(H)-depen 28.5 1.3E+02 0.0029 29.9 6.2 44 297-340 165-209 (351)
456 PRK07533 enoyl-(acyl carrier p 28.5 2.7E+02 0.0059 26.4 8.1 75 298-378 9-96 (258)
457 PRK13394 3-hydroxybutyrate deh 28.3 2.8E+02 0.006 25.9 8.1 74 299-378 7-92 (262)
458 PF03435 Saccharop_dh: Sacchar 28.2 3.5E+02 0.0076 27.6 9.3 83 310-404 7-96 (386)
459 PF01555 N6_N4_Mtase: DNA meth 28.1 62 0.0013 29.7 3.4 34 371-404 1-55 (231)
460 PF11899 DUF3419: Protein of u 28.1 1.3E+02 0.0028 31.2 6.0 43 297-341 34-76 (380)
461 PRK08644 thiamine biosynthesis 28.0 2.8E+02 0.0062 25.9 7.9 33 298-331 27-61 (212)
462 PRK03525 crotonobetainyl-CoA:c 27.7 1.1E+02 0.0025 31.8 5.6 95 298-404 13-122 (405)
463 cd08277 liver_alcohol_DH_like 27.7 1.2E+02 0.0027 30.5 5.8 42 297-340 183-227 (365)
464 TIGR02822 adh_fam_2 zinc-bindi 27.6 1.2E+02 0.0025 30.3 5.5 43 297-340 164-207 (329)
465 PRK06181 short chain dehydroge 27.5 3.1E+02 0.0067 25.8 8.3 73 300-378 2-86 (263)
466 PRK11430 putative CoA-transfer 27.4 1.7E+02 0.0037 30.2 6.8 95 298-404 11-127 (381)
467 PHA02518 ParA-like protein; Pr 27.3 2E+02 0.0043 26.1 6.7 12 323-334 30-41 (211)
468 PTZ00357 methyltransferase; Pr 26.9 1.8E+02 0.004 32.6 6.9 94 301-394 703-820 (1072)
469 KOG1099 SAM-dependent methyltr 26.8 63 0.0014 31.1 3.1 74 298-385 41-132 (294)
470 PF11058 Ral: Antirestriction 26.7 20 0.00044 25.8 -0.1 16 52-67 9-24 (66)
471 COG3392 Adenine-specific DNA m 26.6 83 0.0018 30.9 3.9 75 354-430 189-273 (330)
472 PRK08213 gluconate 5-dehydroge 26.2 3.5E+02 0.0076 25.4 8.4 76 298-379 11-98 (259)
473 KOG2356 Transcriptional activa 26.2 25 0.00055 34.8 0.4 29 352-380 163-194 (366)
474 PRK06172 short chain dehydroge 25.8 3.7E+02 0.0081 25.0 8.5 75 298-378 6-92 (253)
475 PF07669 Eco57I: Eco57I restri 25.7 42 0.00092 27.7 1.6 13 370-382 2-14 (106)
476 PRK09186 flagellin modificatio 25.7 3.3E+02 0.0071 25.4 8.1 76 299-378 4-91 (256)
477 PRK06139 short chain dehydroge 25.6 4E+02 0.0086 26.7 9.0 75 299-379 7-93 (330)
478 PLN02240 UDP-glucose 4-epimera 25.6 4.9E+02 0.011 25.7 9.7 76 299-377 5-88 (352)
479 cd08255 2-desacetyl-2-hydroxye 25.4 1.4E+02 0.0031 28.4 5.5 44 297-340 96-140 (277)
480 PRK07523 gluconate 5-dehydroge 25.3 3.5E+02 0.0075 25.3 8.2 76 298-379 9-96 (255)
481 PRK08703 short chain dehydroge 24.8 2.9E+02 0.0063 25.5 7.5 59 298-361 5-66 (239)
482 PRK07774 short chain dehydroge 24.5 3.9E+02 0.0084 24.7 8.3 74 299-378 6-91 (250)
483 PRK08267 short chain dehydroge 24.5 2.1E+02 0.0046 26.9 6.5 71 301-379 3-86 (260)
484 PRK07424 bifunctional sterol d 24.2 2.7E+02 0.006 29.0 7.6 73 298-378 177-253 (406)
485 PLN02586 probable cinnamyl alc 24.1 4.1E+02 0.0088 26.8 8.8 37 297-334 182-219 (360)
486 TIGR01771 L-LDH-NAD L-lactate 24.1 3.8E+02 0.0083 26.6 8.4 91 308-404 3-112 (299)
487 PF06690 DUF1188: Protein of u 24.0 6.7E+02 0.014 24.3 9.8 55 283-338 24-80 (252)
488 PF00072 Response_reg: Respons 24.0 3.6E+02 0.0077 21.1 8.7 75 325-404 1-78 (112)
489 PF01488 Shikimate_DH: Shikima 23.9 4.3E+02 0.0092 22.6 7.7 74 298-380 11-85 (135)
490 PRK10840 transcriptional regul 23.9 5.5E+02 0.012 23.3 9.1 78 324-404 5-87 (216)
491 cd01488 Uba3_RUB Ubiquitin act 23.9 1.9E+02 0.004 28.8 6.0 71 302-376 2-94 (291)
492 PRK07478 short chain dehydroge 23.8 3.9E+02 0.0084 24.9 8.2 75 299-379 6-92 (254)
493 PRK07825 short chain dehydroge 23.8 6.2E+02 0.013 23.9 11.4 71 299-379 5-87 (273)
494 PRK06484 short chain dehydroge 23.6 8.1E+02 0.017 25.8 11.4 72 298-378 4-87 (520)
495 PRK07063 short chain dehydroge 23.5 4.4E+02 0.0096 24.6 8.6 76 299-378 7-94 (260)
496 cd08293 PTGR2 Prostaglandin re 23.1 1.6E+02 0.0035 29.0 5.6 41 300-340 156-198 (345)
497 PRK14106 murD UDP-N-acetylmura 22.8 8.6E+02 0.019 25.2 13.4 112 299-426 5-132 (450)
498 PRK12743 oxidoreductase; Provi 22.7 4.9E+02 0.011 24.4 8.7 75 299-378 2-88 (256)
499 PRK05786 fabG 3-ketoacyl-(acyl 22.6 4.4E+02 0.0095 24.2 8.2 59 298-362 4-64 (238)
500 cd08238 sorbose_phosphate_red 22.5 1.6E+02 0.0036 30.3 5.7 45 296-340 173-221 (410)
No 1
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.6e-60 Score=486.49 Aligned_cols=341 Identities=28% Similarity=0.457 Sum_probs=291.1
Q ss_pred CCCCCccCCCCCCCcCccCccCc-cCCchHHH--HHHHHHHHhcCC-C---ceecccCCCccceeeeeEEeeecC-CCce
Q 044572 45 LPSLTCALQCPHFQSCSGCTHEF-NLHRPIIV--DEATDFFKSIGL-L---DFTFDSCRLYGWRCRAKLAVRGTS-TSPL 116 (457)
Q Consensus 45 ~~~~Rv~p~C~~f~~CGGC~lqh-~~~~~~~~--~~~~~~l~r~g~-~---~~~~~s~~~~~YRnR~~l~v~~~~-g~~~ 116 (457)
.||+|+.|+|+||+.||||+||| .|+.|+.. +.+.++|++++. . +.++.++.+||||||++|+++... +...
T Consensus 60 ~Sp~R~~~~c~~~g~cggC~lqhl~y~~QL~~K~~~l~~~l~~~~~~~~~~~~~~~~~~~~~yR~ka~~~v~~~~~~~l~ 139 (432)
T COG2265 60 ASPDRVDPPCPHFGRCGGCQLQHLSYEAQLEFKREQLKELLKRIGGSEVEIDPTVGMSPPWGYRNRARFSVRGSGKGQLL 139 (432)
T ss_pred CChhhcCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhcCCCcccccccCCCCCcCceeEEEEEEEEcCCCcEE
Confidence 67999999999999999999999 34344432 457889999763 2 235678999999999999998643 4578
Q ss_pred EEEeecCccceEeCCCCccCChhHHHHHHHHHHHHHhcCCCCcccCCCCCceeEEEEEEEeccCCCCccccccCCcEEEE
Q 044572 117 IGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQIT 196 (457)
Q Consensus 117 vGf~~~~s~~iv~i~~C~i~~p~i~~~l~~l~~~l~~~~~~~y~~~~~~G~lr~l~l~vr~~~~~~~~~~~~~~~~v~v~ 196 (457)
+|||+++||+||++.+|++.+|.+++++..++++++..+.++||+.++.|.++++. +|. .. ++|++
T Consensus 140 ~Gf~~~~s~~iv~i~~C~v~~~~~~~il~~l~~~l~~~~~~~y~~~~~~g~l~~~~--~~~-----------g~-~~~i~ 205 (432)
T COG2265 140 AGFFRQGSHEIVDIDECPVFPPRSNEILPLLRELLAKLGLPPYNEKKKKGILRLIV--LRE-----------GQ-EVMVR 205 (432)
T ss_pred EEeeccCCCceecccccCccCHhHHHHHHHHHHHHHHcCCCccchhhccceEEEEE--ecc-----------Cc-eEEEE
Confidence 99999999999999999999999999999999999999999999999999999863 331 11 68998
Q ss_pred EEeCCCCCCCCCchhHHHHHHHHHHcCCCCCCCceeEEEEEEeecCCCCcccCCeEEEeeccCeEEEeeeeEEEEECCCC
Q 044572 197 LVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSS 276 (457)
Q Consensus 197 lv~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~si~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~g~~~~i~~~~ 276 (457)
+++++. +.+++..+.+.. .++.+.+++++++.+..+.+.+.+...++|...+.+ +..|.+++.+
T Consensus 206 ~v~~~~-------~~~~~~~~~~~~------~~~~~~~i~~~i~~~~~~~i~g~~~~~~~~~~~i~e---~~~~~~~~~s 269 (432)
T COG2265 206 LVTKHL-------PELEQALRELLE------AFPEIKGIVQNINRAKTNVIEGDEEITLYGLESIRE---GVSFQISPRS 269 (432)
T ss_pred EEeccc-------hhHHHHHHHHHH------hhhhcceEEEEecCCCCceEEcceeEEEeccccccc---ceEEEeCCCC
Confidence 888751 233444444432 356678999999999999999999999999884444 9999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEE
Q 044572 277 FGQANTRAFDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNIS 354 (457)
Q Consensus 277 FfQ~n~~~~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~ 354 (457)
|||+|..+++.|++++.+++. ++++|||||||+|+||+++|+. +++|+|||++++|++.|++||+. |+.+|++
T Consensus 270 F~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~---n~i~N~~ 344 (432)
T COG2265 270 FFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAA---NGIDNVE 344 (432)
T ss_pred ceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHH---cCCCcEE
Confidence 999999999999999999986 5689999999999999999965 66999999999999999999998 4567899
Q ss_pred EEEccCCcCccccc--CCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHh
Q 044572 355 WHNADNSIEPLSWL--VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEA 426 (457)
Q Consensus 355 ~~~~d~~~~~~~~~--~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~ 426 (457)
|+.+|++++...+. ..+|+||+||||+|+++++++.|.++. +.+||||| ||+.++.||...+....
T Consensus 345 f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~-p~~IvYVS-----CNP~TlaRDl~~L~~~g 412 (432)
T COG2265 345 FIAGDAEEFTPAWWEGYKPDVVVVDPPRAGADREVLKQLAKLK-PKRIVYVS-----CNPATLARDLAILASTG 412 (432)
T ss_pred EEeCCHHHHhhhccccCCCCEEEECCCCCCCCHHHHHHHHhcC-CCcEEEEe-----CCHHHHHHHHHHHHhCC
Confidence 99999999877653 478999999999999999999999997 99999999 99999999988876654
No 2
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=100.00 E-value=1e-57 Score=475.71 Aligned_cols=365 Identities=23% Similarity=0.329 Sum_probs=296.8
Q ss_pred CCCCCCccCCCCCCCcCccCccCc-cCCchHHH--HHHHHHHHhcC-CC--cee---cccCCCccceeeeeEEeeec-CC
Q 044572 44 NLPSLTCALQCPHFQSCSGCTHEF-NLHRPIIV--DEATDFFKSIG-LL--DFT---FDSCRLYGWRCRAKLAVRGT-ST 113 (457)
Q Consensus 44 ~~~~~Rv~p~C~~f~~CGGC~lqh-~~~~~~~~--~~~~~~l~r~g-~~--~~~---~~s~~~~~YRnR~~l~v~~~-~g 113 (457)
..||+|++|+||||+.||||+||| .|+.|+.. +.+.++|+|++ +. +++ +..+.+||||||++|+++.. .|
T Consensus 48 ~~S~~Rv~p~C~~~~~CGGC~~qh~~y~~Ql~~K~~~v~~~l~r~~~~~~~~~~~~~~~~~~~~~YRnr~~~~v~~~~~g 127 (431)
T TIGR00479 48 EPSPERTRPPCPVFDQCGGCQLQHLDYEFQLRSKQQQVIALLERIGKFTSEPIEPLPTIGGDPWGYRNKARLSLGRSPSG 127 (431)
T ss_pred CCCcCcCCCCCCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHhcCCCcCCceecCCcCCCCCcccceeEEEeeecCCC
Confidence 367999999999999999999999 34444433 45788999876 32 221 11257899999999999643 46
Q ss_pred CceEEEeecCccceEeCCCCccCChhHHHHHHHHHHHHHhcCCCCcccCCCCCceeEEEEEEEeccCCCCccccccCCcE
Q 044572 114 SPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKV 193 (457)
Q Consensus 114 ~~~vGf~~~~s~~iv~i~~C~i~~p~i~~~l~~l~~~l~~~~~~~y~~~~~~G~lr~l~l~vr~~~~~~~~~~~~~~~~v 193 (457)
+..+|||+++||++|++++|++++|.+++++..+++++++.++++|+..+++|.||++.++.. ..++++
T Consensus 128 ~~~~G~~~~~s~~vv~i~~C~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~lr~i~ir~~-----------~~~~~~ 196 (431)
T TIGR00479 128 QIQAGFYQKGSHDIVPIKQCPVQDPALNLLLPKVKAILENFGASIYLEHKELGKARHGVLRIG-----------RRTGEL 196 (431)
T ss_pred CEEEeeecCCCcceEcCCCCCCCCHHHHHHHHHHHHHHHHcCCCccccccCcccceEEEEEEe-----------ccCCCE
Confidence 678999999999999999999999999999999999999999999999999999999765432 146788
Q ss_pred EEEEEeCCCCCCCCCchhHHHHHHHHHHcCCCCCCCceeEEEEEEeecCCCCcccCCeEEEeeccCeEEEeeeeEEEEEC
Q 044572 194 QITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLA 273 (457)
Q Consensus 194 ~v~lv~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~si~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~g~~~~i~ 273 (457)
|+++++..... ...+.+++.+.. ..+.+.++++++++...+.+++.++.+++|..+++++++|.+|.++
T Consensus 197 ~v~~~~~~~~~-----~~~~~~~~~l~~------~~~~v~~v~~~~~~~~~~~~~g~~~~~l~G~~~~~~~~~~~~~~~~ 265 (431)
T TIGR00479 197 LLVLRTALEGF-----PHKEELALELQE------RYPDVKSICQNINPEKTNVIFGEETEQIAGEGPIYEKSGDLSFSLS 265 (431)
T ss_pred EEEEEECCCcc-----ccHHHHHHHHHH------hCCCceEEEEEeCCCCCCeeeCCceEEEeCCCeEEEEECCEEEEEC
Confidence 98887654321 123345554432 2456889999999988888889889999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCC
Q 044572 274 PSSFGQANTRAFDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDG 351 (457)
Q Consensus 274 ~~~FfQ~n~~~~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~ 351 (457)
+++|||+|+.+++.|++.+.+++. ++++|||+|||+|.+++.+|+. +.+|+|||++++|++.|++|++.+ +.+
T Consensus 266 ~~~F~Q~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~---~~~ 340 (431)
T TIGR00479 266 ARDFFQVNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELN---GIA 340 (431)
T ss_pred CCceeecCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHh---CCC
Confidence 999999999999999999988764 5689999999999999999975 469999999999999999999874 357
Q ss_pred cEEEEEccCCcCcccc---cCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhcc
Q 044572 352 NISWHNADNSIEPLSW---LVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASV 428 (457)
Q Consensus 352 nv~~~~~d~~~~~~~~---~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~~ 428 (457)
|++|+++|+.+.+..+ ...||+|++||||.|+..++++.+..+. +++++|+| |++.++.+++..+....
T Consensus 341 nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~G~~~~~l~~l~~l~-~~~ivyvs-----c~p~tlard~~~l~~~g-- 412 (431)
T TIGR00479 341 NVEFLAGTLETVLPKQPWAGQIPDVLLLDPPRKGCAAEVLRTIIELK-PERIVYVS-----CNPATLARDLEFLCKEG-- 412 (431)
T ss_pred ceEEEeCCHHHHHHHHHhcCCCCCEEEECcCCCCCCHHHHHHHHhcC-CCEEEEEc-----CCHHHHHHHHHHHHHCC--
Confidence 8999999997654332 2369999999999999999999998886 78999999 99999999988775431
Q ss_pred ccccccCCCCCCCCCc
Q 044572 429 QIGSKTNSENQSLPQT 444 (457)
Q Consensus 429 ~~~~~~~~~~~~~p~~ 444 (457)
+........+.+|+|
T Consensus 413 -y~~~~~~~~DmFP~T 427 (431)
T TIGR00479 413 -YGITWVQPVDMFPHT 427 (431)
T ss_pred -eeEEEEEEeccCCCC
Confidence 212222356788887
No 3
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=100.00 E-value=1.3e-56 Score=457.97 Aligned_cols=353 Identities=17% Similarity=0.292 Sum_probs=283.6
Q ss_pred CCCCC--CcCccCccCc-cCCchHHH--HHHHHHHHhcCCCc--ee-cccCCCccceeeeeEEeeecCCCceEEEeecCc
Q 044572 53 QCPHF--QSCSGCTHEF-NLHRPIIV--DEATDFFKSIGLLD--FT-FDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGT 124 (457)
Q Consensus 53 ~C~~f--~~CGGC~lqh-~~~~~~~~--~~~~~~l~r~g~~~--~~-~~s~~~~~YRnR~~l~v~~~~g~~~vGf~~~~s 124 (457)
.|||| +.||||+||| .|+.|+.. +.++++|+| ++.+ +. ...+.+||||||++|+++...++..+||+.++
T Consensus 1 ~C~~~~~~~CGGC~~qhl~y~~Ql~~K~~~v~~~l~r-~~~~~~~~~~i~~~~~~YRnr~~l~v~~~~~~~~~G~~~~~- 78 (374)
T TIGR02085 1 QCAFYIQGRCRSCQWLAQPYSEQLTNKQQHLKELLAP-NATVVQWLAPVTSAEQAFRNKAKMVVSGSVERPILGILHRD- 78 (374)
T ss_pred CCCCCCCCCCCCCcccCCCHHHHHHHHHHHHHHHHhh-cCCCccccCCcCCCCccccceEEEEEEEcCCcEEEeEecCC-
Confidence 59999 6999999999 34444433 458899998 6522 21 22335899999999999755566789988776
Q ss_pred cceEeCCCCccCChhHHHHHHHHHHHHHhcCCCCcccCCCCCceeEEEEEEEeccCCCCccccccCCcEEEEEEeCCCCC
Q 044572 125 HNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNE 204 (457)
Q Consensus 125 ~~iv~i~~C~i~~p~i~~~l~~l~~~l~~~~~~~y~~~~~~G~lr~l~l~vr~~~~~~~~~~~~~~~~v~v~lv~~~~~~ 204 (457)
|.+|+|++|++++|.+++++..+++++++.++++|++.+++|.||++.++.. ..++++|+++++.....
T Consensus 79 ~~~v~i~~C~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lr~i~ir~~-----------~~~~~~~v~l~~~~~~~ 147 (374)
T TIGR02085 79 GTPLDLCDCPLYPQSFQPVFAYLKNFIARAGLTPYNVAKKKGELKFILLTES-----------ENSGQLMLRFVLRSETK 147 (374)
T ss_pred CcEEcCccCCCCCHhHHHHHHHHHHHHHHcCCCCccccCCCccceEEEEEEe-----------ccCCCEEEEEEECCCcc
Confidence 7799999999999999999999999999999999999999999999866542 14688999887654211
Q ss_pred CCCCchhHHHHHHHHHHcCCCCCCCceeEEEEEEeecCCCCcccCCeEEEeeccCeEEEeeeeEEEEECCCCCCCCCHHH
Q 044572 205 KSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRA 284 (457)
Q Consensus 205 ~~~~~~~~~~l~~~l~~~~~~~~~~~~i~si~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~g~~~~i~~~~FfQ~n~~~ 284 (457)
.+.++++.+.+.. ..+.+.+++++.++...+.+++.+..+++|+.++.++++|++|++++++|||+|..+
T Consensus 148 ----~~~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~~g~~~~~l~G~~~i~e~~~g~~~~~~~~~F~Q~n~~~ 217 (374)
T TIGR02085 148 ----LAQIRRALPWLIE------QLPQLEVISVNIQPVHMAILEGEEEIFLTEQQALPERFNDVPLVIRPQSFFQTNPKV 217 (374)
T ss_pred ----chhHHHHHHHHHH------HCCCcEEEEEEECCCCCCceECceEEEEcCCCeeEEEECCEEEEECCCccccCCHHH
Confidence 1223344333321 235678888888988888888877888999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCc
Q 044572 285 FDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSI 362 (457)
Q Consensus 285 ~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~ 362 (457)
++.|++.+.+++. .+.+|||||||+|++|+.+|.. +.+|+|||+++.|++.|++|++.+ ..+|++|+++|+.+
T Consensus 218 ~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~---~~~~~~~~~~d~~~ 292 (374)
T TIGR02085 218 AAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQML---GLDNLSFAALDSAK 292 (374)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHc---CCCcEEEEECCHHH
Confidence 9999999888753 5689999999999999999964 369999999999999999999984 34689999999977
Q ss_pred CcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhccccccccCCCCCCCC
Q 044572 363 EPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQIGSKTNSENQSLP 442 (457)
Q Consensus 363 ~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 442 (457)
.+......||+||+||||.|++.++++.+..+. ++++||+| |++.++.||+..+ .+ +.-+.....+.+|
T Consensus 293 ~~~~~~~~~D~vi~DPPr~G~~~~~l~~l~~~~-p~~ivyvs-----c~p~TlaRDl~~L---~g--y~l~~~~~~DmFP 361 (374)
T TIGR02085 293 FATAQMSAPELVLVNPPRRGIGKELCDYLSQMA-PKFILYSS-----CNAQTMAKDIAEL---SG--YQIERVQLFDMFP 361 (374)
T ss_pred HHHhcCCCCCEEEECCCCCCCcHHHHHHHHhcC-CCeEEEEE-----eCHHHHHHHHHHh---cC--ceEEEEEEeccCC
Confidence 654333469999999999999999999999886 89999999 9999999999887 11 2222223668888
Q ss_pred Cc
Q 044572 443 QT 444 (457)
Q Consensus 443 ~~ 444 (457)
+|
T Consensus 362 qT 363 (374)
T TIGR02085 362 HT 363 (374)
T ss_pred CC
Confidence 87
No 4
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=100.00 E-value=3e-50 Score=420.36 Aligned_cols=343 Identities=22% Similarity=0.348 Sum_probs=251.4
Q ss_pred CCCCCccCCCCCCCcCccCccCc-cCCchHHH--HHHHHHHHhcC-CCc--ee-cccCCCccceeeeeEEeee--cCCCc
Q 044572 45 LPSLTCALQCPHFQSCSGCTHEF-NLHRPIIV--DEATDFFKSIG-LLD--FT-FDSCRLYGWRCRAKLAVRG--TSTSP 115 (457)
Q Consensus 45 ~~~~Rv~p~C~~f~~CGGC~lqh-~~~~~~~~--~~~~~~l~r~g-~~~--~~-~~s~~~~~YRnR~~l~v~~--~~g~~ 115 (457)
.+|+|++|+|+||+.||||+||| .|++|+.. +.++++|+|++ +.. +. ...+.+||||||++|+++. ..|++
T Consensus 71 ~sp~Rv~p~C~~~~~CGGC~~qh~~y~~Ql~~K~~~v~~~l~r~~~~~~~~~~~~i~~~~~~YRnk~~~~~~~~~~~g~~ 150 (443)
T PRK13168 71 PSPERVTPRCPHFGVCGGCQLQHLSIDAQIASKQRALEDLLKHLAGVEPEEVLPPIAGPPWGYRRRARLSVRYVPKKGQL 150 (443)
T ss_pred CCcccCCCCCCcCCcCcCchhcCCCHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcCCCCCCCceEEEEeeeecCCCCE
Confidence 67999999999999999999999 44444443 45789999986 322 21 2233689999999999964 24667
Q ss_pred eEEEeecCccceEeCCCCccCChhHHHHHHHHHHHHHhcCCCCcccCCCCCceeEEEEEEEeccCCCCccccccCCcEEE
Q 044572 116 LIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQI 195 (457)
Q Consensus 116 ~vGf~~~~s~~iv~i~~C~i~~p~i~~~l~~l~~~l~~~~~~~y~~~~~~G~lr~l~l~vr~~~~~~~~~~~~~~~~v~v 195 (457)
.+|||+++||+||++++|++++|.+++++..++++++..+. . |.++++.++.+ .++..++
T Consensus 151 ~~G~~~~~s~~vv~i~~C~l~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~l~~~~~------------~~~~~~~ 210 (443)
T PRK13168 151 LVGFREKNSSDIVDIDQCPVLVPPLSALLPPLRALLSSLSA-----K---RRLGHVELAQG------------DNGTALV 210 (443)
T ss_pred EEEEecCCCceeEECCCCccCCHhHHHHHHHHHHHHHHcCC-----C---ccccEEEEEEe------------CCceEEE
Confidence 89999999999999999999999999999999998876432 1 34566544432 2444443
Q ss_pred EEEeCCCCCCCCCchhHHHHHHHHHHcCCCCCCCceeEEEEEEeecCCCCcccCCeEEEeecc----CeEEEeeeeEEEE
Q 044572 196 TLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGE----TDFWENVGGIDIS 271 (457)
Q Consensus 196 ~lv~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~si~~~~~~~~~~~~~~~~~~~l~G~----~~~~~~~~g~~~~ 271 (457)
...... .. ....+.+.+ +.. ...+ ++++ +... .+...++|. ..+.++++|++|+
T Consensus 211 ~~~~~~--~~---~~~~~~~~~-~~~-------~~~~-~i~~--~~~~------~~~~~i~g~~~~~~~~~~~~~g~~f~ 268 (443)
T PRK13168 211 LRHLEP--LS---EADRAKLRA-FAE-------QHGL-QLYL--QPKG------PDLVHLLGPADAQLSYYLPEFGLRLA 268 (443)
T ss_pred EEEcCC--CC---hHHHHHHHH-Hhh-------cccE-EEEE--ECCC------CcceeecccccCCcceEEEcCCeEEE
Confidence 322121 11 112223322 221 1233 5543 3321 223344554 2344458999999
Q ss_pred ECCCCCCCCCHHHHHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCC
Q 044572 272 LAPSSFGQANTRAFDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSV 349 (457)
Q Consensus 272 i~~~~FfQ~n~~~~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~ 349 (457)
++|++|||+|+.+++.|++.+.+++. ++.+|||+|||+|.+++.+|.. +.+|+|||+|++|++.|++|++.+ +
T Consensus 269 ~~~~~F~q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~--~~~V~gvD~s~~al~~A~~n~~~~---~ 343 (443)
T PRK13168 269 FSPRDFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ--AAEVVGVEGVEAMVERARENARRN---G 343 (443)
T ss_pred ECCCCeEEcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHc---C
Confidence 99999999999999999999998764 6789999999999999999976 369999999999999999999874 3
Q ss_pred CCcEEEEEccCCcCccc--c-cCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHh
Q 044572 350 DGNISWHNADNSIEPLS--W-LVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEA 426 (457)
Q Consensus 350 ~~nv~~~~~d~~~~~~~--~-~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~ 426 (457)
.+|++|+++|+.+.+.. + ...||+|++||||.|+. ++++.+.++. +++++|+| |++.++.||+..+...
T Consensus 344 ~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g~~-~~~~~l~~~~-~~~ivyvS-----Cnp~tlaRDl~~L~~~- 415 (443)
T PRK13168 344 LDNVTFYHANLEEDFTDQPWALGGFDKVLLDPPRAGAA-EVMQALAKLG-PKRIVYVS-----CNPATLARDAGVLVEA- 415 (443)
T ss_pred CCceEEEEeChHHhhhhhhhhcCCCCEEEECcCCcChH-HHHHHHHhcC-CCeEEEEE-----eChHHhhccHHHHhhC-
Confidence 46899999999765432 1 24699999999999986 5778998886 89999999 9999999998887532
Q ss_pred ccccccccCCCCCCCCCc
Q 044572 427 SVQIGSKTNSENQSLPQT 444 (457)
Q Consensus 427 ~~~~~~~~~~~~~~~p~~ 444 (457)
+.++ ......+.+|+|
T Consensus 416 gY~l--~~i~~~DmFP~T 431 (443)
T PRK13168 416 GYRL--KRAGMLDMFPHT 431 (443)
T ss_pred CcEE--EEEEEeccCCCC
Confidence 2222 222356788876
No 5
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=100.00 E-value=3.3e-49 Score=401.57 Aligned_cols=326 Identities=16% Similarity=0.149 Sum_probs=243.3
Q ss_pred CccCccCccCCchHH--H--HHHHHHHHhcCCCceecccCCCccceeeeeEEeeecCCCceEEEeecCccceEeCCCCcc
Q 044572 60 CSGCTHEFNLHRPII--V--DEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKA 135 (457)
Q Consensus 60 CGGC~lqh~~~~~~~--~--~~~~~~l~r~g~~~~~~~s~~~~~YRnR~~l~v~~~~g~~~vGf~~~~s~~iv~i~~C~i 135 (457)
||||+||| ++|+.| . +.+.++|+|+|....++....+||||||++|++....|+..+|||+++||++|+|++|++
T Consensus 1 CGGC~~qh-l~y~~Ql~~K~~~v~~~l~r~~~~~~~i~~s~~~~YRnr~~~~v~~~~g~~~~G~~~~~s~~vv~i~~C~i 79 (362)
T PRK05031 1 MTPECLPP-EQYEAQLAEKVARLKELFAPFSAPEPEVFRSPPSHYRMRAEFRIWHEGDDLYYAMFDQQTKQRIRIDQFPI 79 (362)
T ss_pred CCCccCCC-CCHHHHHHHHHHHHHHHHHhcCCCCCCcccCCcccccceEEEEEEEeCCCEEEEEEeCCCCCeEECccCcC
Confidence 99999999 555444 3 458899999874222332224799999999999653366789999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHhcCCCCcccCCCCCceeEEEEEEEeccCCCCccccccCCcEEEEEEeCCCCCCCCCchhHHHH
Q 044572 136 HHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESL 215 (457)
Q Consensus 136 ~~p~i~~~l~~l~~~l~~~~~~~y~~~~~~G~lr~l~l~vr~~~~~~~~~~~~~~~~v~v~lv~~~~~~~~~~~~~~~~l 215 (457)
++|.+++++..++++++..+. ..+. ++++ ..+. . .+|++|+++++... .. +.++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~--~~~~---------~-~~g~~~v~l~~~~~-~~----~~~~~~ 135 (362)
T PRK05031 80 ASELINALMPALLAALRANPV-----LRHK--LFQV--DFLS---------T-LSGEILVSLLYHKK-LD----EEWEQA 135 (362)
T ss_pred CCHHHHHHHHHHHHHHHhcCc-----hheE--EEEE--EEEe---------c-CCCCEEEEEEECCC-CC----hHHHHH
Confidence 999999999999998765432 1111 2232 1111 0 36788988876422 11 123344
Q ss_pred HHHHHHcCCCCCCCceeEEEEEEeecCCCCcccCCeEEEeeccCeEEEee--ee--EEEEECCCCCCCCCHHHHHHHHHH
Q 044572 216 AEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENV--GG--IDISLAPSSFGQANTRAFDILLRK 291 (457)
Q Consensus 216 ~~~l~~~~~~~~~~~~i~si~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~--~g--~~~~i~~~~FfQ~n~~~~~~l~~~ 291 (457)
++.+.. +.+.+ ++ .+. +....+++|..++.+++ +| +.|++++++|||+|+.+++.|+++
T Consensus 136 ~~~l~~------~~~~~-~i---~~~-------~~~~~~~~G~~~i~e~l~~~~~~~~~~~~~~sF~Q~N~~~~e~l~~~ 198 (362)
T PRK05031 136 AKALRD------ALFNV-HL---IGR-------SRKQKIVLDQDYVDERLPVAGREFIYRQVENSFTQPNAAVNEKMLEW 198 (362)
T ss_pred HHHHHH------HCCCc-EE---Eec-------CCCcEEEcCCCEEEEEEecCCcEEEEEeCCCCeeccCHHHHHHHHHH
Confidence 444432 12333 33 111 12235678999999988 56 899999999999999999999999
Q ss_pred HHhhCC-CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc--
Q 044572 292 LQKYVP-YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL-- 368 (457)
Q Consensus 292 i~~~~~-~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~-- 368 (457)
+.+++. .+.+|||||||+|+||+.+|+. +++|+|||+++.|++.|++|++.+ +.+|++|+++|+.+.+..+.
T Consensus 199 v~~~~~~~~~~vLDl~~G~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~~~---~~~~v~~~~~d~~~~l~~~~~~ 273 (362)
T PRK05031 199 ALDATKGSKGDLLELYCGNGNFTLALARN--FRRVLATEISKPSVAAAQYNIAAN---GIDNVQIIRMSAEEFTQAMNGV 273 (362)
T ss_pred HHHHhhcCCCeEEEEeccccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHHh---CCCcEEEEECCHHHHHHHHhhc
Confidence 999875 2357999999999999999964 569999999999999999999884 34689999999987653321
Q ss_pred -------------CCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhccccccccC
Q 044572 369 -------------VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQIGSKTN 435 (457)
Q Consensus 369 -------------~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (457)
..||+||+||||.|+++++++.|.+ ++++|||| |++.+..||+..+.. + +.-...
T Consensus 274 ~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~---~~~ivyvS-----C~p~tlarDl~~L~~--g--Y~l~~v 341 (362)
T PRK05031 274 REFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQA---YERILYIS-----CNPETLCENLETLSQ--T--HKVERF 341 (362)
T ss_pred ccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHc---cCCEEEEE-----eCHHHHHHHHHHHcC--C--cEEEEE
Confidence 1489999999999999999999976 58999999 999999999998752 2 222223
Q ss_pred CCCCCCCCc
Q 044572 436 SENQSLPQT 444 (457)
Q Consensus 436 ~~~~~~p~~ 444 (457)
...+.+|+|
T Consensus 342 ~~~DmFPqT 350 (362)
T PRK05031 342 ALFDQFPYT 350 (362)
T ss_pred EEcccCCCC
Confidence 366888887
No 6
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=100.00 E-value=2e-45 Score=372.33 Aligned_cols=317 Identities=22% Similarity=0.344 Sum_probs=208.7
Q ss_pred CCchHHH--HHHHHHHHhcCCCceecccCCCccceeeeeEEeeecCCCceEEEeecCccceEeCCCCccCChhHHHHHHH
Q 044572 69 LHRPIIV--DEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVEL 146 (457)
Q Consensus 69 ~~~~~~~--~~~~~~l~r~g~~~~~~~s~~~~~YRnR~~l~v~~~~g~~~vGf~~~~s~~iv~i~~C~i~~p~i~~~l~~ 146 (457)
|++|+.. +.+.++|++++..+.++....+|+||||++|+|+...++..+|||+++||++|+|++|++++|.||++++.
T Consensus 2 Y~~QL~~K~~~l~~~l~~~~~~~~~i~~s~~~~YRnKa~~~v~~~~~~~~~g~~~~~s~~iv~i~~C~i~~~~In~~l~~ 81 (352)
T PF05958_consen 2 YEKQLEFKQQILKELLRRIGKLEIEIIASPPWGYRNKARFPVRKDKGKLILGFFRRGSHEIVDIEECPIADPEINKLLPA 81 (352)
T ss_dssp HHHHHHHHHHHHHHHHTTT-----EEE---SSS-BSEEEEEEEECTTCEEEEEEECTTS-EEE-S--TTB-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCceecCCChhcccEEEEEEEEcCCcEEEEEEecCCCceEECCCCccccHHHHHHHHH
Confidence 3444432 45888999987655555555579999999999988777888999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcccCCCCCceeEEEEEEEeccCCCCccccccCCcEEEEEEeCCCCCCCCCchhHHHHHHHHHHcCCCC
Q 044572 147 LRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSR 226 (457)
Q Consensus 147 l~~~l~~~~~~~y~~~~~~G~lr~l~l~vr~~~~~~~~~~~~~~~~v~v~lv~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 226 (457)
++++++... .-...++++.+. .+ .++++||+|+++.. . .+........+...
T Consensus 82 l~~~l~~~~-------~l~~~l~~i~~~--~~----------~~~ei~V~lv~~~~-l----~~~~~~~~~~L~~~---- 133 (352)
T PF05958_consen 82 LRELLKKNE-------KLKNKLFHIEFL--ST----------LSGEIMVTLVTHKP-L----DDEWKEALEALAQN---- 133 (352)
T ss_dssp HHHHHTTSH-------HHHTCEEEEEEE--EE----------TTCEEEEEEEESS--------HHHHHHHHHHHHT----
T ss_pred HHHHHhhhh-------hhhceeeEEEEE--Ee----------cCCCEEEEEEeCCc-C----CHHHHHHHHhhhhc----
Confidence 999985321 011235555332 11 46889999888643 1 12333444444421
Q ss_pred CCCceeEEEEEEeecCCCCcccCCeEEEeeccCeEEEee----eeEEEEECCCCCCCCCHHHHHHHHHHHHhhCCC-CCe
Q 044572 227 SREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENV----GGIDISLAPSSFGQANTRAFDILLRKLQKYVPY-GAS 301 (457)
Q Consensus 227 ~~~~~i~si~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~----~g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~~~-~~~ 301 (457)
..++...+. .....++|..++.+.+ .+++|+++|++|||+|+.+++.|++.+.+++.. +..
T Consensus 134 ------~~~~ii~~~--------~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~sFfQvN~~~~~~l~~~~~~~l~~~~~~ 199 (352)
T PF05958_consen 134 ------LNVNIIGRS--------KKTKIVLGQDYVEERLEIQDKGLSFRISPGSFFQVNPEQNEKLYEQALEWLDLSKGD 199 (352)
T ss_dssp ------EEEEEECCC--------TCEEEECS-CEEECE--ECCCTEEEEEETTS---SBHHHHHHHHHHHHHHCTT-TTE
T ss_pred ------ceEEEEEcC--------CccEEEccCcEEeeEeeeeccceEEEECCCcCccCcHHHHHHHHHHHHHHhhcCCCc
Confidence 122211111 2233445555554433 478999999999999999999999999999862 348
Q ss_pred EEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc--------------
Q 044572 302 VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW-------------- 367 (457)
Q Consensus 302 vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~-------------- 367 (457)
|||||||+|+||+++|.. +++|+|||++++|+++|++|++. |+.+|++|++++++++...+
T Consensus 200 vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~---N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~ 274 (352)
T PF05958_consen 200 VLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKL---NGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDL 274 (352)
T ss_dssp EEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHH---TT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-G
T ss_pred EEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHH---cCCCcceEEEeeccchhHHHHhhHHHHhhhhhhh
Confidence 999999999999999965 66999999999999999999998 45689999999886543211
Q ss_pred -cCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhccccccccCCCCCCCCCc
Q 044572 368 -LVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQIGSKTNSENQSLPQT 444 (457)
Q Consensus 368 -~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 444 (457)
...+|+||+||||+|+++.+++.+.+. ++||||| |+|.++.||+..+.. + +.-......+.+|+|
T Consensus 275 ~~~~~d~vilDPPR~G~~~~~~~~~~~~---~~ivYvS-----CnP~tlaRDl~~L~~--~--y~~~~v~~~DmFP~T 340 (352)
T PF05958_consen 275 KSFKFDAVILDPPRAGLDEKVIELIKKL---KRIVYVS-----CNPATLARDLKILKE--G--YKLEKVQPVDMFPQT 340 (352)
T ss_dssp GCTTESEEEE---TT-SCHHHHHHHHHS---SEEEEEE-----S-HHHHHHHHHHHHC--C--EEEEEEEEE-SSTTS
T ss_pred hhcCCCEEEEcCCCCCchHHHHHHHhcC---CeEEEEE-----CCHHHHHHHHHHHhh--c--CEEEEEEEeecCCCC
Confidence 125799999999999999999988653 7999999 999999999988753 2 222222356788876
No 7
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-43 Score=357.24 Aligned_cols=356 Identities=18% Similarity=0.212 Sum_probs=269.6
Q ss_pred ccCCCCCCCcCccCccCccCCchHHHHHHHH---HHHhcC---------CCc----eecccCCCccceeeeeEEeee-cC
Q 044572 50 CALQCPHFQSCSGCTHEFNLHRPIIVDEATD---FFKSIG---------LLD----FTFDSCRLYGWRCRAKLAVRG-TS 112 (457)
Q Consensus 50 v~p~C~~f~~CGGC~lqh~~~~~~~~~~~~~---~l~r~g---------~~~----~~~~s~~~~~YRnR~~l~v~~-~~ 112 (457)
+..||.+..-|+||-++. ..+..+++.+.. .+.+.- +.+ ..++||...|||||++|.++. ..
T Consensus 126 ~Vtpl~~~Sy~~qL~lk~-~~~~~vl~kl~~~~~~li~~kv~~~~~~~~~~d~~Le~I~pSp~~~~yrnKceFsvg~~~~ 204 (534)
T KOG2187|consen 126 VVTPLEYLSYGEQLELKQ-LSQEAVLQKLERLIGDLIRAKVAFLGPQYHLHDRVLEVIIPSPIQNGYRNKCEFSVGQLLD 204 (534)
T ss_pred hcceeeeeccccchhhhh-ccHHHHHHHHHHHHHHHHhheeecccccchhhcccccccccCccccCchhcceeecccccc
Confidence 557888888999999876 333323322222 222211 111 246799999999999999974 34
Q ss_pred CCc-eEEEee----cCccceEeCCCCccCChhHHHHHHHHHHHHHhcCCCCcccCCCCCceeEEEEEEEeccCCCCcccc
Q 044572 113 TSP-LIGLYQ----EGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASER 187 (457)
Q Consensus 113 g~~-~vGf~~----~~s~~iv~i~~C~i~~p~i~~~l~~l~~~l~~~~~~~y~~~~~~G~lr~l~l~vr~~~~~~~~~~~ 187 (457)
|+. .+||+. .|.+.++.--+|.++++..+.++..++++++++.+.||++..++|+||+| +||+.
T Consensus 205 g~~~~vgf~lg~~~~g~~~~~~pvd~~llp~~~~~V~s~~Q~f~R~t~l~P~~~~~~~G~wk~L--tVRt~--------- 273 (534)
T KOG2187|consen 205 GEDDTVGFVLGRFSKGAFAVVAPVDVKLLPEIMSQVASAVQEFYRETKLSPYDDFPKGGFWKQL--TVRTE--------- 273 (534)
T ss_pred CCcCceeeeeeeeecCceEEeccccccccChHHHHHHHHHHHHHhcCCCccccccCCCCceeee--EEEec---------
Confidence 444 666664 45667776667778889999999999999999999999999999999996 55643
Q ss_pred ccCCcEEEEEEeCCCCCCCCCc-hhHHHHHHHHHHcCCCCCCCceeEEEEEEeecCCCCcccCCeEEEeeccCeEEEeee
Q 044572 188 YRNGKVQITLVWNSRNEKSPNS-DKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVG 266 (457)
Q Consensus 188 ~~~~~v~v~lv~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~i~si~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~ 266 (457)
..+..|.++.+..-.+..... +..+.+.+++....+ ....+..+|+.-.....+.-.+....++.|+.+++|.++
T Consensus 274 -~~~~~~~il~i~~~~l~~e~l~e~~~ki~~~f~~~~~---~a~~l~~l~~q~~~~ts~~~~~~~~~l~~~~~~I~E~l~ 349 (534)
T KOG2187|consen 274 -FRGGAMAILTIHPCKLATEELTELKKKIEQRFLSGPG---FASGLRVLYLQESGHTSDGQEGKPLQLVGGDPYITESLL 349 (534)
T ss_pred -ccCceEEEEEEEeecccHHHHHHHHHHHHHHHhcccc---cccceeEEEEecccccccCCCCCCeEEEccccEEEeecC
Confidence 456667776655432221111 223334444432211 122355545432222223234567889999999999999
Q ss_pred eEEEEECCCCCCCCCHHHHHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572 267 GIDISLAPSSFGQANTRAFDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR 344 (457)
Q Consensus 267 g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~ 344 (457)
|++|+|+|++|||+|+.++|.||+.|.+++. .++.++|+|||||+||+.+|+. +++|+|||++++|+++|++||+.
T Consensus 350 ~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~ 427 (534)
T KOG2187|consen 350 GLTFRISPGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQI 427 (534)
T ss_pred CeEEEECCchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchh
Confidence 9999999999999999999999999999864 6788999999999999999964 67999999999999999999998
Q ss_pred CCCCCCCcEEEEEccCCcCcccccC----Ccc-EEEECCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhH
Q 044572 345 LPKSVDGNISWHNADNSIEPLSWLV----GSD-VLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPW 419 (457)
Q Consensus 345 ~~~~~~~nv~~~~~d~~~~~~~~~~----~~D-~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~ 419 (457)
|+++|++|++|-+++.+..+.. .-+ ++|+||||+|++..++++|+.+..+.+++|+| |++++..+++
T Consensus 428 ---NgisNa~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyvS-----Cn~~t~ar~v 499 (534)
T KOG2187|consen 428 ---NGISNATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYVS-----CNPHTAARNV 499 (534)
T ss_pred ---cCccceeeeecchhhccchhcccCCCCCceEEEECCCcccccHHHHHHHHhccCccceEEEE-----cCHHHhhhhH
Confidence 5679999999988887655432 235 89999999999999999999998899999999 9999999999
Q ss_pred HHHHHHhccccc
Q 044572 420 ILRAKEASVQIG 431 (457)
Q Consensus 420 ~~~~~~~~~~~~ 431 (457)
+++|+....+..
T Consensus 500 ~~lc~~~~~~~~ 511 (534)
T KOG2187|consen 500 IDLCSSPKYRLK 511 (534)
T ss_pred HHhhcCcccccc
Confidence 999998775443
No 8
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=100.00 E-value=1.4e-41 Score=340.13 Aligned_cols=300 Identities=19% Similarity=0.290 Sum_probs=243.8
Q ss_pred EeeecCCCceEEEeecCccceEeCCCCccCChhHHHHHHHHHHHHHhcCCCCcccCCCCCceeEEEEEEEeccCCCCccc
Q 044572 107 AVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASE 186 (457)
Q Consensus 107 ~v~~~~g~~~vGf~~~~s~~iv~i~~C~i~~p~i~~~l~~l~~~l~~~~~~~y~~~~~~G~lr~l~l~vr~~~~~~~~~~ 186 (457)
.|++..++..+|||++++ .+|+|++||+++|.++++++.+++++++.++++|++..++|.||++.++..
T Consensus 2 ~~~~~~~~~~~G~~~~~~-~~v~i~~C~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~lr~~~ir~~---------- 70 (315)
T PRK03522 2 VVSGSVERPLLGILHRDG-TPVDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTES---------- 70 (315)
T ss_pred eeccccCccEEeEEcCCC-cEEcCCCCcCCCHHHHHHHHHHHHHHHHcCCCCCcCCCCCceeeEEEEEee----------
Confidence 345566778899999866 679999999999999999999999999999999999999999999765431
Q ss_pred cccCCcEEEEEEeCCCCCCCCCchhHHHHHHHHHHcCCCCCCCceeEEEEEEeecCCCCcccCCeEEEeeccCeEEEeee
Q 044572 187 RYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVG 266 (457)
Q Consensus 187 ~~~~~~v~v~lv~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~si~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~ 266 (457)
..++++|++++++.... .+....+.+.+.. ..+.+.+++++++++..+.+++.+...++|..++.++++
T Consensus 71 -~~~~~~~v~l~~~~~~~----~~~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~~g~~~~~l~g~~~~~~~~~ 139 (315)
T PRK03522 71 -QSDGELMLRFVLRSETK----LARLRRALPWLQA------QLPQLKVISVNIQPVHMAILEGEEEIFLTEQQALPERFN 139 (315)
T ss_pred -cCCCCEEEEEEECCCcc----chhHHHHHHHHHH------HCCCCEEEEEEECCCCCCcccCCceEEEeCCCeEEEEEC
Confidence 14688999887654211 0112233332321 235678888899998888888888888999999999999
Q ss_pred eEEEEECCCCCCCCCHHHHHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572 267 GIDISLAPSSFGQANTRAFDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR 344 (457)
Q Consensus 267 g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~ 344 (457)
|..|.+++.+|||+|..+++.|++.+.+++. ++.+|||+|||+|.+++.+|.. ..+|+|||+++.|++.|++|++.
T Consensus 140 ~~~~~~~~~sF~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~ 217 (315)
T PRK03522 140 GVPLFIRPQSFFQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAE 217 (315)
T ss_pred CEEEEECCCeeeecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999888764 5789999999999999999975 35999999999999999999988
Q ss_pred CCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHH
Q 044572 345 LPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAK 424 (457)
Q Consensus 345 ~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~ 424 (457)
+ +.+|++|+++|+.++.......||+||+||||.|+.+++++.|.... +++++|+| |++.++.|++..+
T Consensus 218 ~---~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~G~~~~~~~~l~~~~-~~~ivyvs-----c~p~t~~rd~~~l-- 286 (315)
T PRK03522 218 L---GLTNVQFQALDSTQFATAQGEVPDLVLVNPPRRGIGKELCDYLSQMA-PRFILYSS-----CNAQTMAKDLAHL-- 286 (315)
T ss_pred c---CCCceEEEEcCHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHcC-CCeEEEEE-----CCcccchhHHhhc--
Confidence 4 34689999999987543333469999999999999999999999986 89999999 9999999998776
Q ss_pred HhccccccccCCCCCCCCCc
Q 044572 425 EASVQIGSKTNSENQSLPQT 444 (457)
Q Consensus 425 ~~~~~~~~~~~~~~~~~p~~ 444 (457)
.+ +.-......+.+|+|
T Consensus 287 -~~--y~~~~~~~~DmFP~T 303 (315)
T PRK03522 287 -PG--YRIERVQLFDMFPHT 303 (315)
T ss_pred -cC--cEEEEEEEeccCCCC
Confidence 11 222222356788887
No 9
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=100.00 E-value=2.1e-41 Score=343.13 Aligned_cols=310 Identities=19% Similarity=0.190 Sum_probs=228.9
Q ss_pred HHHHHHHHhcCCCc-eecccCCCccceeeeeEEeeecCCCceEEEeecCccceEeCCCCccCChhHHHHHHHHHHHHHhc
Q 044572 76 DEATDFFKSIGLLD-FTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKEL 154 (457)
Q Consensus 76 ~~~~~~l~r~g~~~-~~~~s~~~~~YRnR~~l~v~~~~g~~~vGf~~~~s~~iv~i~~C~i~~p~i~~~l~~l~~~l~~~ 154 (457)
+.+.++|+|+|... ..++++ +||||||++|++....|++.+|||+++||.+|++++|++++|.+++++..++++++..
T Consensus 11 ~~v~~~l~r~~~~~~~v~~s~-~~~YRnr~~~~~~~~~g~~~~G~~~~~s~~iv~i~~C~i~~~~i~~~~~~~~~~l~~~ 89 (353)
T TIGR02143 11 SRLKDLFAPFDAPEPEVFESP-DKHYRMRAEFRIWHEGDDLYYAMFDQQTKSKIRVDQFPAASELINRLMPALIAALRQN 89 (353)
T ss_pred HHHHHHHHhcCCCcCCCcCCc-cccccceEEEEEEecCCcEEEEEEeCCCCCeEECCCCcCCCHHHHHHHHHHHHHHHhC
Confidence 45788999987421 123455 8999999999996435667899999999999999999999999999999999987654
Q ss_pred CCCCcccCCCCCceeEEEEEEEeccCCCCccccccCCcEEEEEEeCCCCCCCCCchhHHHHHHHHHHcCCCCCCCceeEE
Q 044572 155 NVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHS 234 (457)
Q Consensus 155 ~~~~y~~~~~~G~lr~l~l~vr~~~~~~~~~~~~~~~~v~v~lv~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~s 234 (457)
+. ..++ .+++.+..+ .++++|+++++.. .. .+.+..+...+... ...+
T Consensus 90 ~~-----~~~~--~~~~~~~~~------------~~~~~~v~l~~~~-~~----~~~~~~~~~~~~~~------~~~~-- 137 (353)
T TIGR02143 90 PA-----LRHK--LFQVDFLTT------------LSGEALVSLLYHK-QL----DDEWRQAAEALKDI------KLNV-- 137 (353)
T ss_pred Cc-----ccce--eEEEEEEec------------CCCCEEEEEEeCC-cc----cHHHHHHHHHHHHh------CCce--
Confidence 32 2222 223321111 3678888887431 11 11122222222110 0011
Q ss_pred EEEEeecCCCCcccCCeEEEeeccCeEEEee--ee--EEEEECCCCCCCCCHHHHHHHHHHHHhhCC-CCCeEEEEcccc
Q 044572 235 VWANFQTSTNNVIFGNRWRHLLGETDFWENV--GG--IDISLAPSSFGQANTRAFDILLRKLQKYVP-YGASVTDLYAGA 309 (457)
Q Consensus 235 i~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~--~g--~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~~-~~~~vLDl~cG~ 309 (457)
+++.. +.+..+++|..++.+++ +| ++|.+++++|||+|..+++.|++.+.+++. .+.+|||||||+
T Consensus 138 ---~~~~~------~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~F~Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~ 208 (353)
T TIGR02143 138 ---NLIGR------ARKKKIVLDQDYVDETLPVAGREFIYRQVENSFTQPNAAVNIKMLEWACEVTQGSKGDLLELYCGN 208 (353)
T ss_pred ---EEEEc------CCCcEEEcCCCEEEEEEecCCeEEEEEECCCCcccCCHHHHHHHHHHHHHHhhcCCCcEEEEeccc
Confidence 11211 12346678998888877 56 899999999999999999999999999875 345799999999
Q ss_pred cHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc---------c------CCccEE
Q 044572 310 GVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW---------L------VGSDVL 374 (457)
Q Consensus 310 G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~---------~------~~~D~v 374 (457)
|+||+.+|+. +++|+|||++++|++.|++|++.+ +.+|++|+++|+.+++... . ..||+|
T Consensus 209 G~~sl~la~~--~~~v~~vE~~~~av~~a~~n~~~~---~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 283 (353)
T TIGR02143 209 GNFSLALAQN--FRRVLATEIAKPSVNAAQYNIAAN---NIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTI 283 (353)
T ss_pred cHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHc---CCCcEEEEEcCHHHHHHHHhhccccccccccccccCCCCEE
Confidence 9999999975 469999999999999999999983 3568999999998765421 0 137999
Q ss_pred EECCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhccccccccCCCCCCCCCc
Q 044572 375 VVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQIGSKTNSENQSLPQT 444 (457)
Q Consensus 375 i~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 444 (457)
|+||||.|+.+++++.|.+ ++++|||| |++.++.||...+... +.-......+.+|+|
T Consensus 284 ~lDPPR~G~~~~~l~~l~~---~~~ivYvs-----C~p~tlaRDl~~L~~~----Y~l~~v~~~DmFP~T 341 (353)
T TIGR02143 284 FVDPPRAGLDPDTCKLVQA---YERILYIS-----CNPETLKANLEQLSET----HRVERFALFDQFPYT 341 (353)
T ss_pred EECCCCCCCcHHHHHHHHc---CCcEEEEE-----cCHHHHHHHHHHHhcC----cEEEEEEEcccCCCC
Confidence 9999999999999999876 58999999 9999999999887521 322223356788877
No 10
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.83 E-value=3.1e-19 Score=181.10 Aligned_cols=195 Identities=15% Similarity=0.095 Sum_probs=134.9
Q ss_pred eEEEeecc---CeEEEeeeeEEEEECC-----CCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCC
Q 044572 251 RWRHLLGE---TDFWENVGGIDISLAP-----SSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKC 322 (457)
Q Consensus 251 ~~~~l~G~---~~~~~~~~g~~~~i~~-----~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~ 322 (457)
...+++|. ..+...++|.+|.++. ++||.+++..- .++.+++. |++|||+||.||+||+++|. +||
T Consensus 167 ~~~~~~g~~~~~~~~i~E~g~kf~v~~~~g~kTGfFlDqR~~R----~~l~~~~~-GkrvLNlFsYTGgfSv~Aa~-gGA 240 (393)
T COG1092 167 RSQYLKGEEAPEEVVIEENGVKFLVDLVDGLKTGFFLDQRDNR----RALGELAA-GKRVLNLFSYTGGFSVHAAL-GGA 240 (393)
T ss_pred cccccccccCCCcEEEEeCCeEEEEecCCcccceeeHHhHHHH----HHHhhhcc-CCeEEEecccCcHHHHHHHh-cCC
Confidence 34456663 2455677899999984 79998877654 34445565 99999999999999999996 788
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc---CCccEEEECCCCCCccH-----------HHH
Q 044572 323 RSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDS-----------SLV 388 (457)
Q Consensus 323 ~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~---~~~D~vi~DPPR~Gl~~-----------~v~ 388 (457)
++|++||+|..+++.|++|++.|+. ..+.+.|+++|+++++.... .+||+||+|||..+-++ +++
T Consensus 241 ~~vt~VD~S~~al~~a~~N~~LNg~-~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~ 319 (393)
T COG1092 241 SEVTSVDLSKRALEWARENAELNGL-DGDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLN 319 (393)
T ss_pred CceEEEeccHHHHHHHHHHHHhcCC-CccceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHH
Confidence 9999999999999999999998532 23568999999999876553 37999999999543222 233
Q ss_pred HHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhccccc----cccCCCCC---CCCCceeeeecccc
Q 044572 389 HALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQIG----SKTNSENQ---SLPQTLIYISCGWE 453 (457)
Q Consensus 389 ~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~~p~~~~yl~~~~~ 453 (457)
....++..+++++++|+|++.-....+.+..+..+........ ..+..||+ ..|++. |||+.|-
T Consensus 320 ~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~~~~~~~~D~p~~~~~~~~~-ylk~~f~ 390 (393)
T COG1092 320 DLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEIEGEGQPPDHPRNAQIPETL-YLKALFL 390 (393)
T ss_pred HHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEeeccCCCCCccccccCcchh-eeeeeeE
Confidence 3333433477777777544444444444444444444433332 22234664 567777 9998764
No 11
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.80 E-value=1.2e-18 Score=178.84 Aligned_cols=188 Identities=15% Similarity=0.128 Sum_probs=131.4
Q ss_pred eEEEeeccC---eEEEeeeeEEEEECC-----CCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCC
Q 044572 251 RWRHLLGET---DFWENVGGIDISLAP-----SSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKC 322 (457)
Q Consensus 251 ~~~~l~G~~---~~~~~~~g~~~~i~~-----~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~ 322 (457)
....++|+. .+..+++|++|.++. ++||-.++..-. ++ ..+ .++++|||+|||+|.|++.++. .++
T Consensus 170 ~~~~~~G~~~~~~~~v~E~g~~f~vdl~~g~ktG~flDqr~~R~-~~---~~~-~~g~rVLDlfsgtG~~~l~aa~-~ga 243 (396)
T PRK15128 170 TQGPVTGELPPALLPIEEHGMKLLVDIQGGHKTGYYLDQRDSRL-AT---RRY-VENKRVLNCFSYTGGFAVSALM-GGC 243 (396)
T ss_pred cceEEecCCCCccEEEEECCEEEEEecccccccCcChhhHHHHH-HH---HHh-cCCCeEEEeccCCCHHHHHHHh-CCC
Confidence 456788874 356678999999985 578877654332 22 222 3588999999999999998775 567
Q ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCCC-CcEEEEEccCCcCcccc---cCCccEEEECCCCCCccHH-----------H
Q 044572 323 RSVKCVEINKESQLSFEKTVSRLPKSVD-GNISWHNADNSIEPLSW---LVGSDVLVVDPPRKGLDSS-----------L 387 (457)
Q Consensus 323 ~~V~gVE~~~~av~~A~~Na~~~~~~~~-~nv~~~~~d~~~~~~~~---~~~~D~vi~DPPR~Gl~~~-----------v 387 (457)
.+|++||+|+.+++.|++|++.|+ .. ++++++++|+++++..+ ...||+||+|||+.--++. +
T Consensus 244 ~~V~~VD~s~~al~~a~~N~~~Ng--l~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l 321 (396)
T PRK15128 244 SQVVSVDTSQEALDIARQNVELNK--LDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDI 321 (396)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcC--CCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHH
Confidence 899999999999999999999843 22 47999999998876443 2479999999997433221 1
Q ss_pred H-HHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhccccc--------cccCCCC---CCCCCceeeeeccc
Q 044572 388 V-HALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQIG--------SKTNSEN---QSLPQTLIYISCGW 452 (457)
Q Consensus 388 ~-~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~---~~~p~~~~yl~~~~ 452 (457)
. .++..+++.+.+++.| |+++....+|.+...+++.+.+ ..+..|| .++||+. |||+.+
T Consensus 322 ~~~a~~lLk~gG~lv~~s-----cs~~~~~~~f~~~v~~aa~~~~~~~~~l~~~~~~~DhP~~~~~pe~~-YLK~~~ 392 (396)
T PRK15128 322 NMLAIQLLNPGGILLTFS-----CSGLMTSDLFQKIIADAAIDAGRDVQFIEQFRQAADHPVIATYPEGL-YLKGFA 392 (396)
T ss_pred HHHHHHHcCCCeEEEEEe-----CCCcCCHHHHHHHHHHHHHHcCCeEEEEEEcCCCCCCCCCCCCCCcC-CceEEE
Confidence 1 2233445445555565 7777666667776666554432 2223477 4678888 999865
No 12
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.76 E-value=4e-18 Score=166.77 Aligned_cols=171 Identities=16% Similarity=0.109 Sum_probs=113.5
Q ss_pred CCeEEEeeccC--eEEEeeeeEEEEECC-----CCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCC
Q 044572 249 GNRWRHLLGET--DFWENVGGIDISLAP-----SSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARK 321 (457)
Q Consensus 249 ~~~~~~l~G~~--~~~~~~~g~~~~i~~-----~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~ 321 (457)
+.....++|+. .+...++|++|.++. ++||-..++.-. ++.++. .|++||||||.||+||+.++. +|
T Consensus 72 ~~~~~~l~G~~~~~~~v~E~gl~f~v~l~~gqktGlFlDqR~nR~----~v~~~~-~gkrvLnlFsYTGgfsv~Aa~-gG 145 (286)
T PF10672_consen 72 GAPSEVLYGEPPEFFTVEENGLKFRVDLTDGQKTGLFLDQRENRK----WVRKYA-KGKRVLNLFSYTGGFSVAAAA-GG 145 (286)
T ss_dssp T-EEEEEESS-SSEEEEEETTEEEEEESSSSSSTSS-GGGHHHHH----HHHHHC-TTCEEEEET-TTTHHHHHHHH-TT
T ss_pred CCCceEEecCCCCceEEEECCEEEEEEcCCCCcceEcHHHHhhHH----HHHHHc-CCCceEEecCCCCHHHHHHHH-CC
Confidence 34566788874 455678999999984 799998877643 233344 589999999999999999886 78
Q ss_pred CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc--cCCccEEEECCCCC-----CccH---HHHHHH
Q 044572 322 CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW--LVGSDVLVVDPPRK-----GLDS---SLVHAL 391 (457)
Q Consensus 322 ~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~--~~~~D~vi~DPPR~-----Gl~~---~v~~~l 391 (457)
+++|+.||.|+.+++.|++|++.|+. ..++++|+++|+++++... ..+||+||+|||.. .+.. +++..+
T Consensus 146 A~~v~~VD~S~~al~~a~~N~~lNg~-~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a 224 (286)
T PF10672_consen 146 AKEVVSVDSSKRALEWAKENAALNGL-DLDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRA 224 (286)
T ss_dssp ESEEEEEES-HHHHHHHHHHHHHTT--CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCC-CccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHH
Confidence 89999999999999999999998542 2368999999999876542 35899999999942 2222 233333
Q ss_pred HhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhcccc
Q 044572 392 QSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQI 430 (457)
Q Consensus 392 ~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~~~~ 430 (457)
.++-.+++++++++ |+++.....|++.++.++.+.
T Consensus 225 ~~ll~~gG~l~~~s----cs~~i~~~~l~~~~~~~a~~~ 259 (286)
T PF10672_consen 225 MKLLKPGGLLLTCS----CSHHISPDFLLEAVAEAAREV 259 (286)
T ss_dssp HHTEEEEEEEEEEE------TTS-HHHHHHHHHHHHHHC
T ss_pred HHhcCCCCEEEEEc----CCcccCHHHHHHHHHHhCccc
Confidence 33333666655554 555555556666666555444
No 13
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.74 E-value=4.8e-17 Score=151.96 Aligned_cols=134 Identities=22% Similarity=0.223 Sum_probs=100.6
Q ss_pred eeEEEEECCCCCCCCCHH-HHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572 266 GGIDISLAPSSFGQANTR-AFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR 344 (457)
Q Consensus 266 ~g~~~~i~~~~FfQ~n~~-~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~ 344 (457)
.|.++.+.++..+....+ ..+.+++.+... .++.+|||||||+|.+++.++.+ ++.+|++||+++++++.|++|++.
T Consensus 21 ~g~~l~~~~~~~~Rp~~d~v~e~l~~~l~~~-~~~~~vLDl~~GsG~l~l~~lsr-~a~~V~~vE~~~~a~~~a~~Nl~~ 98 (199)
T PRK10909 21 RGRKLPVPDSPGLRPTTDRVRETLFNWLAPV-IVDARCLDCFAGSGALGLEALSR-YAAGATLLEMDRAVAQQLIKNLAT 98 (199)
T ss_pred CCCEeCCCCCCCcCcCCHHHHHHHHHHHhhh-cCCCEEEEcCCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHH
Confidence 577787766544433322 223344443322 25789999999999999975543 467999999999999999999998
Q ss_pred CCCCCCCcEEEEEccCCcCcccccCCccEEEECCC-CCCccHHHHHHHHhc--CCCCcEEEEe
Q 044572 345 LPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPP-RKGLDSSLVHALQSI--GSAERKAKSL 404 (457)
Q Consensus 345 ~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPP-R~Gl~~~v~~~l~~~--~~~~~ivyvs 404 (457)
+ +.++++++++|+.+.+......||+||+||| +.|+..++++.|... -.+++++|++
T Consensus 99 ~---~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve 158 (199)
T PRK10909 99 L---KAGNARVVNTNALSFLAQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVE 158 (199)
T ss_pred h---CCCcEEEEEchHHHHHhhcCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEE
Confidence 4 2458999999998755332346999999999 789999999999874 1479999999
No 14
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.69 E-value=2.2e-16 Score=161.45 Aligned_cols=124 Identities=16% Similarity=0.096 Sum_probs=103.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCC---CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCC
Q 044572 275 SSFGQANTRAFDILLRKLQKYVP---YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDG 351 (457)
Q Consensus 275 ~~FfQ~n~~~~~~l~~~i~~~~~---~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~ 351 (457)
..|||.|...++.|...+.+.+. ++.+|||+|||+|.+|+.+|...++.+|+++|+|+.|++.+++|++.| +.+
T Consensus 31 ~vFyqp~~~~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N---~~~ 107 (382)
T PRK04338 31 PVFYNPRMELNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELN---GLE 107 (382)
T ss_pred CeeeCccccchhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh---CCC
Confidence 58999999999998888877654 236899999999999999998766779999999999999999999984 346
Q ss_pred cEEEEEccCCcCcccccCCccEEEECCCCCCccHHHHHH-HHhcCCCCcEEEEec
Q 044572 352 NISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHA-LQSIGSAERKAKSLS 405 (457)
Q Consensus 352 nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~-l~~~~~~~~ivyvs~ 405 (457)
+++++++|+...+.. ...||+|++||| |....+++. +..++ +++++|+|+
T Consensus 108 ~~~v~~~Da~~~l~~-~~~fD~V~lDP~--Gs~~~~l~~al~~~~-~~gilyvSA 158 (382)
T PRK04338 108 NEKVFNKDANALLHE-ERKFDVVDIDPF--GSPAPFLDSAIRSVK-RGGLLCVTA 158 (382)
T ss_pred ceEEEhhhHHHHHhh-cCCCCEEEECCC--CCcHHHHHHHHHHhc-CCCEEEEEe
Confidence 788999999775532 356999999998 776777777 66665 899999983
No 15
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.68 E-value=6.7e-16 Score=149.81 Aligned_cols=119 Identities=21% Similarity=0.283 Sum_probs=96.3
Q ss_pred eEEEeeccCeEEEeeeeEEEEECCCCCCCCCHHHHHHHHHHHHhhCC---CCCeEEEEcccccHHHHHHHhhCCCCEEEE
Q 044572 251 RWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVP---YGASVTDLYAGAGVIGLSLAAARKCRSVKC 327 (457)
Q Consensus 251 ~~~~l~G~~~~~~~~~g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~~---~~~~vLDl~cG~G~~sl~lA~~~~~~~V~g 327 (457)
+.++|.|... +.|++|.+++++|+ |+..++.|++.+.+++. ...+|||+|||+|.+++.++...+..+|+|
T Consensus 42 Pl~yi~g~~~----f~g~~~~v~~~vf~--pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~ 115 (251)
T TIGR03704 42 PLEHVLGWAE----FCGLRIAVDPGVFV--PRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHA 115 (251)
T ss_pred CHHHhcccCe----EcCeEEEECCCCcC--CCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEE
Confidence 4555666654 57899999999998 78889999999887654 235899999999999999997654568999
Q ss_pred EeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccc-ccCCccEEEECCCCC
Q 044572 328 VEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS-WLVGSDVLVVDPPRK 381 (457)
Q Consensus 328 VE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~-~~~~~D~vi~DPPR~ 381 (457)
+|+|+.|++.|++|++.+ + ++++++|+.+.+.. ..+.||+||+|||+.
T Consensus 116 vDis~~al~~A~~N~~~~--~----~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 116 ADIDPAAVRCARRNLADA--G----GTVHEGDLYDALPTALRGRVDILAANAPYV 164 (251)
T ss_pred EECCHHHHHHHHHHHHHc--C----CEEEEeechhhcchhcCCCEeEEEECCCCC
Confidence 999999999999999873 1 37899998765432 225799999999975
No 16
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.66 E-value=1.9e-15 Score=140.92 Aligned_cols=175 Identities=19% Similarity=0.216 Sum_probs=111.8
Q ss_pred hHHHHHHHHHHcCCCCCCCceeEEEEEEeecCCCCcccCCeEEEeeccC-e-EEEeeeeEEEEECCCCCCCCCHHHHHHH
Q 044572 211 KLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGET-D-FWENVGGIDISLAPSSFGQANTRAFDIL 288 (457)
Q Consensus 211 ~~~~l~~~l~~~~~~~~~~~~i~si~~~~~~~~~~~~~~~~~~~l~G~~-~-~~~~~~g~~~~i~~~~FfQ~n~~~~~~l 288 (457)
..+.+++.++.. .+.+.+++.....-.+. .....+++|+|+. . ...+++|++|.+|..--|...+-..|+
T Consensus 21 ~~~~I~~~i~~~------~~~vktV~~k~~~v~g~-~R~~~~~~LaG~~~~~t~~~E~G~~f~~D~~kvyfs~rl~~Er- 92 (200)
T PF02475_consen 21 YKELIAEAILEK------NPNVKTVYNKIGIVEGE-FRTPDLEVLAGEPRTETIHKENGIRFKVDLSKVYFSPRLSTER- 92 (200)
T ss_dssp HHHHHHHHHHHH------C-T-SEEEEE-S-SBTT-TTB--EEEEEES--SEEEEEETTEEEEEETTTS---GGGHHHH-
T ss_pred HHHHHHHHHHHh------ccCceEEEEecCcCCCC-cccccEEEEeCCCceEEEEEeCCEEEEEccceEEEccccHHHH-
Confidence 445677777653 44677887654332222 2335689999987 3 334789999999976544444555665
Q ss_pred HHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc
Q 044572 289 LRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL 368 (457)
Q Consensus 289 ~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~ 368 (457)
..+.+.+.+|++|+|+|||.|.|++.+|+..+++.|+|+|+||+|++.+++|++.| +..+++..+++|+.+++. .
T Consensus 93 -~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lN--kv~~~i~~~~~D~~~~~~--~ 167 (200)
T PF02475_consen 93 -RRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLN--KVENRIEVINGDAREFLP--E 167 (200)
T ss_dssp -HHHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHT--T-TTTEEEEES-GGG-----T
T ss_pred -HHHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHc--CCCCeEEEEcCCHHHhcC--c
Confidence 45566667899999999999999999998666789999999999999999999995 455679999999988765 4
Q ss_pred CCccEEEECCCCCCccHHHHHHHHhcCCCCcE
Q 044572 369 VGSDVLVVDPPRKGLDSSLVHALQSIGSAERK 400 (457)
Q Consensus 369 ~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~i 400 (457)
..+|.|+++.|.... +.+.....+.+.+++
T Consensus 168 ~~~drvim~lp~~~~--~fl~~~~~~~~~~g~ 197 (200)
T PF02475_consen 168 GKFDRVIMNLPESSL--EFLDAALSLLKEGGI 197 (200)
T ss_dssp T-EEEEEE--TSSGG--GGHHHHHHHEEEEEE
T ss_pred cccCEEEECChHHHH--HHHHHHHHHhcCCcE
Confidence 679999999997654 355555444333433
No 17
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.63 E-value=4.8e-15 Score=163.17 Aligned_cols=138 Identities=12% Similarity=0.049 Sum_probs=102.2
Q ss_pred CeEEEeeeeEEEEECC-----CCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHH
Q 044572 259 TDFWENVGGIDISLAP-----SSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKE 333 (457)
Q Consensus 259 ~~~~~~~~g~~~~i~~-----~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~ 333 (457)
..+...++|++|.++. ++||-.++..- .++.++. .+.+|||+|||+|.||+.+|. .|+++|++||+|+.
T Consensus 499 ~~~~v~e~g~~f~v~~~~~~~tG~flDqr~~R----~~~~~~~-~g~rVLDlf~gtG~~sl~aa~-~Ga~~V~~vD~s~~ 572 (702)
T PRK11783 499 EFLEVTEYGAKLLVNLTDYLDTGLFLDHRPTR----RMIGQMA-KGKDFLNLFAYTGTASVHAAL-GGAKSTTTVDMSNT 572 (702)
T ss_pred ceEEEEECCEEEEEEcCCCCcceECHHHHHHH----HHHHHhc-CCCeEEEcCCCCCHHHHHHHH-CCCCEEEEEeCCHH
Confidence 3455677999999984 46776655432 2233333 588999999999999999997 56789999999999
Q ss_pred HHHHHHHHHhhCCCCCC-CcEEEEEccCCcCcccccCCccEEEECCCCCCcc-------------HHHHHHHHhcCCCCc
Q 044572 334 SQLSFEKTVSRLPKSVD-GNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLD-------------SSLVHALQSIGSAER 399 (457)
Q Consensus 334 av~~A~~Na~~~~~~~~-~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~-------------~~v~~~l~~~~~~~~ 399 (457)
|++.|++|++.|+ .. ++++++++|+.+++......||+||+|||+.+-+ .+++..+.++-.+++
T Consensus 573 al~~a~~N~~~ng--~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG 650 (702)
T PRK11783 573 YLEWAERNFALNG--LSGRQHRLIQADCLAWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGG 650 (702)
T ss_pred HHHHHHHHHHHhC--CCccceEEEEccHHHHHHHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999853 32 4799999999886544345799999999975422 123444333334777
Q ss_pred EEEEe
Q 044572 400 KAKSL 404 (457)
Q Consensus 400 ivyvs 404 (457)
+++++
T Consensus 651 ~l~~~ 655 (702)
T PRK11783 651 TLYFS 655 (702)
T ss_pred EEEEE
Confidence 77776
No 18
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.61 E-value=7.7e-15 Score=149.70 Aligned_cols=124 Identities=18% Similarity=0.241 Sum_probs=101.5
Q ss_pred CCeEEEeeccCeEEEeeeeEEEEECCCCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEE
Q 044572 249 GNRWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCV 328 (457)
Q Consensus 249 ~~~~~~l~G~~~~~~~~~g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gV 328 (457)
+.+.+++.|... +.|.+|.++++.|+ ++..++.+++.+.+.+.++.+|||+|||+|.+++.++......+|+|+
T Consensus 208 gePlqYIlG~~~----F~G~~f~V~p~vLI--PRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAV 281 (423)
T PRK14966 208 GEPVAYILGVRE----FYGRRFAVNPNVLI--PRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRAS 281 (423)
T ss_pred CCCceeEeeeee----ecCcEEEeCCCccC--CCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEE
Confidence 345666777654 56899999999999 688999999999887766789999999999999999976555699999
Q ss_pred eCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCC
Q 044572 329 EINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKG 382 (457)
Q Consensus 329 E~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~G 382 (457)
|+|++|++.|++|++.+ + .+++++++|+.+........||+||.|||+..
T Consensus 282 DiS~~ALe~AreNa~~~--g--~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 282 DISPPALETARKNAADL--G--ARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred ECCHHHHHHHHHHHHHc--C--CcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 99999999999999873 2 37999999986542111246999999999843
No 19
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.61 E-value=1.2e-14 Score=143.44 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=93.4
Q ss_pred EEEeeccCeEEEeeeeEEEEECCCCCCCCCHHHHHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEe
Q 044572 252 WRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVE 329 (457)
Q Consensus 252 ~~~l~G~~~~~~~~~g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE 329 (457)
..++.|... +.|++|.+++++|+ .+++..+.+...+.+++. ++.+|||+|||+|.+++.+|......+|+|+|
T Consensus 78 l~yi~g~~~----f~g~~f~v~~~vli-pr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avD 152 (284)
T TIGR03533 78 VAYLTNEAW----FAGLEFYVDERVLI-PRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVD 152 (284)
T ss_pred HHHHcCCCe----ecCcEEEECCCCcc-CCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEE
Confidence 445556665 46899999999999 566554444444444442 45789999999999999999865446899999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCC
Q 044572 330 INKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRK 381 (457)
Q Consensus 330 ~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~ 381 (457)
+|+.|++.|++|++.+ +..++++++++|+.+.+. ...||+||.||||.
T Consensus 153 is~~al~~A~~n~~~~--~~~~~i~~~~~D~~~~~~--~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 153 ISPDALAVAEINIERH--GLEDRVTLIQSDLFAALP--GRKYDLIVSNPPYV 200 (284)
T ss_pred CCHHHHHHHHHHHHHc--CCCCcEEEEECchhhccC--CCCccEEEECCCCC
Confidence 9999999999999874 333579999999876432 24699999999985
No 20
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.59 E-value=2e-14 Score=143.38 Aligned_cols=124 Identities=16% Similarity=0.197 Sum_probs=94.5
Q ss_pred eEEEeeccCeEEEeeeeEEEEECCCCCCCCCHHHHHHHHHHHHhhCCC-C-CeEEEEcccccHHHHHHHhhCCCCEEEEE
Q 044572 251 RWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPY-G-ASVTDLYAGAGVIGLSLAAARKCRSVKCV 328 (457)
Q Consensus 251 ~~~~l~G~~~~~~~~~g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~~~-~-~~vLDl~cG~G~~sl~lA~~~~~~~V~gV 328 (457)
+..++.|..+ +.|++|.+++++|+ .+++..+.+...+.+++.. + .+|||+|||+|.+++.++......+|+|+
T Consensus 89 Pl~yi~g~~~----F~g~~f~v~~~vli-pr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~av 163 (307)
T PRK11805 89 PAAYLTNEAW----FCGLEFYVDERVLV-PRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAV 163 (307)
T ss_pred cHHHHcCcce----EcCcEEEECCCCcC-CCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEE
Confidence 3445666665 46899999999999 5655544444443334432 2 68999999999999999986555699999
Q ss_pred eCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCCc
Q 044572 329 EINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGL 383 (457)
Q Consensus 329 E~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl 383 (457)
|+|+.|++.|++|++.+ +..++++++++|+.+.+. ...||+||.||||.+.
T Consensus 164 Dis~~al~~A~~n~~~~--~l~~~i~~~~~D~~~~l~--~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 164 DISPDALAVAEINIERH--GLEDRVTLIESDLFAALP--GRRYDLIVSNPPYVDA 214 (307)
T ss_pred eCCHHHHHHHHHHHHHh--CCCCcEEEEECchhhhCC--CCCccEEEECCCCCCc
Confidence 99999999999999874 333579999999876442 2469999999998653
No 21
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.59 E-value=5.4e-14 Score=128.53 Aligned_cols=107 Identities=26% Similarity=0.285 Sum_probs=84.5
Q ss_pred EEEEECCCCCCCCCHH-HHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCC
Q 044572 268 IDISLAPSSFGQANTR-AFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLP 346 (457)
Q Consensus 268 ~~~~i~~~~FfQ~n~~-~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~ 346 (457)
++|...|+.|.+.... .++.|++.+... .+.+|||+|||+|.+|+.+++.....+|+++|+++.|++.|++|++.+
T Consensus 2 ~~~~~~~gvFs~~~~d~~t~lL~~~l~~~--~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n- 78 (170)
T PF05175_consen 2 LEFITHPGVFSPPRLDAGTRLLLDNLPKH--KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERN- 78 (170)
T ss_dssp EEEEEETTSTTTTSHHHHHHHHHHHHHHH--TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHT-
T ss_pred EEEEECCCeeCCCCCCHHHHHHHHHHhhc--cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc-
Confidence 5788899999987764 455666665554 578999999999999999998655447999999999999999999984
Q ss_pred CCCCCcEEEEEccCCcCcccccCCccEEEECCCCC
Q 044572 347 KSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRK 381 (457)
Q Consensus 347 ~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~ 381 (457)
..++++++..|+.+... ..+||+|+.|||..
T Consensus 79 --~~~~v~~~~~d~~~~~~--~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 79 --GLENVEVVQSDLFEALP--DGKFDLIVSNPPFH 109 (170)
T ss_dssp --TCTTEEEEESSTTTTCC--TTCEEEEEE---SB
T ss_pred --Ccccccccccccccccc--ccceeEEEEccchh
Confidence 33449999999987654 36899999999963
No 22
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.56 E-value=5.8e-14 Score=130.50 Aligned_cols=135 Identities=16% Similarity=0.193 Sum_probs=97.2
Q ss_pred eeEEEEECCCCCCCC-CHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572 266 GGIDISLAPSSFGQA-NTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR 344 (457)
Q Consensus 266 ~g~~~~i~~~~FfQ~-n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~ 344 (457)
.|.++..+++.+--. ....-+.+++.+...+ ++.+|||||||+|++|+.++. +++++|++||.++.+++.+++|++.
T Consensus 17 kg~~l~~p~~~~~rpt~~~vrea~f~~l~~~~-~g~~vLDLfaGsG~lglea~s-rga~~v~~vE~~~~a~~~~~~N~~~ 94 (189)
T TIGR00095 17 GGRLLKLPPGGSTRPTTRVVRELFFNILRPEI-QGAHLLDVFAGSGLLGEEALS-RGAKVAFLEEDDRKANQTLKENLAL 94 (189)
T ss_pred CCcccCCCCCCCCCCchHHHHHHHHHHHHHhc-CCCEEEEecCCCcHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 456666665554322 2333445556554444 588999999999999999997 4678999999999999999999998
Q ss_pred CCCCCCCcEEEEEccCCcCccccc---CCccEEEECCCCC-CccHHHHHHHHhc--CCCCcEEEEe
Q 044572 345 LPKSVDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRK-GLDSSLVHALQSI--GSAERKAKSL 404 (457)
Q Consensus 345 ~~~~~~~nv~~~~~d~~~~~~~~~---~~~D~vi~DPPR~-Gl~~~v~~~l~~~--~~~~~ivyvs 404 (457)
+ +..++++++++|+.+.+..+. ..+|+|++|||+. ....++++.+... ...+.++++.
T Consensus 95 ~--~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E 158 (189)
T TIGR00095 95 L--KSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVE 158 (189)
T ss_pred h--CCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEE
Confidence 4 333579999999977543321 2389999999985 4445666666553 2467777776
No 23
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.56 E-value=3e-14 Score=130.06 Aligned_cols=134 Identities=21% Similarity=0.240 Sum_probs=100.4
Q ss_pred eEEEEECCCCCC-CCCHHHHHHHHHHHHh-hCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572 267 GIDISLAPSSFG-QANTRAFDILLRKLQK-YVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR 344 (457)
Q Consensus 267 g~~~~i~~~~Ff-Q~n~~~~~~l~~~i~~-~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~ 344 (457)
|.++.+.++.-. .+--.+-|.+++++.. ++ .|.++||||+|||++|+.++. +|+++|+.||.|..++..+++|++.
T Consensus 11 gr~L~~p~~~~~RPT~drVREalFNil~~~~i-~g~~~LDlFAGSGaLGlEAlS-RGA~~~~~vE~~~~a~~~l~~N~~~ 88 (187)
T COG0742 11 GRKLKTPDGPGTRPTTDRVREALFNILAPDEI-EGARVLDLFAGSGALGLEALS-RGAARVVFVEKDRKAVKILKENLKA 88 (187)
T ss_pred CCcccCCCCCCcCCCchHHHHHHHHhcccccc-CCCEEEEecCCccHhHHHHHh-CCCceEEEEecCHHHHHHHHHHHHH
Confidence 555555553222 2234566788888777 35 589999999999999999996 6799999999999999999999998
Q ss_pred CCCCCCCcEEEEEccCCcCcccccCC--ccEEEECCCCC-CccHHHHHHHH--h--cCCCCcEEEEe
Q 044572 345 LPKSVDGNISWHNADNSIEPLSWLVG--SDVLVVDPPRK-GLDSSLVHALQ--S--IGSAERKAKSL 404 (457)
Q Consensus 345 ~~~~~~~nv~~~~~d~~~~~~~~~~~--~D~vi~DPPR~-Gl~~~v~~~l~--~--~~~~~~ivyvs 404 (457)
++ ...+++++..|+...+...... ||+|++|||+. |+.......+. . +..++.++|+.
T Consensus 89 l~--~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E 153 (187)
T COG0742 89 LG--LEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVE 153 (187)
T ss_pred hC--CccceEEEeecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEE
Confidence 53 3467899999998665544444 99999999986 66543333333 2 23589999998
No 24
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.54 E-value=1.1e-14 Score=134.43 Aligned_cols=135 Identities=25% Similarity=0.322 Sum_probs=94.3
Q ss_pred eeEEEEECCCCCCCC-CHHHHHHHHHHHHhh-CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHh
Q 044572 266 GGIDISLAPSSFGQA-NTRAFDILLRKLQKY-VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343 (457)
Q Consensus 266 ~g~~~~i~~~~FfQ~-n~~~~~~l~~~i~~~-~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~ 343 (457)
.|.++...++..... -...-|.+++++... + +|.++||||||||.+|+++.. +||++|+.||.|+.+++..++|++
T Consensus 9 kgr~l~~p~~~~~RPT~drvrealFniL~~~~~-~g~~vLDLFaGSGalGlEALS-RGA~~v~fVE~~~~a~~~i~~N~~ 86 (183)
T PF03602_consen 9 KGRKLKTPKGDNTRPTTDRVREALFNILQPRNL-EGARVLDLFAGSGALGLEALS-RGAKSVVFVEKNRKAIKIIKKNLE 86 (183)
T ss_dssp TT-EEE-TT--TS-SSSHHHHHHHHHHHHCH-H-TT-EEEETT-TTSHHHHHHHH-TT-SEEEEEES-HHHHHHHHHHHH
T ss_pred CCCEecCCCCCCcCCCcHHHHHHHHHHhccccc-CCCeEEEcCCccCccHHHHHh-cCCCeEEEEECCHHHHHHHHHHHH
Confidence 355666655433322 234667888887766 4 589999999999999999886 679999999999999999999999
Q ss_pred hCCCCCCCcEEEEEccCCcCcccc---cCCccEEEECCCCC-Ccc-HHHHHHHHhcC--CCCcEEEEe
Q 044572 344 RLPKSVDGNISWHNADNSIEPLSW---LVGSDVLVVDPPRK-GLD-SSLVHALQSIG--SAERKAKSL 404 (457)
Q Consensus 344 ~~~~~~~~nv~~~~~d~~~~~~~~---~~~~D~vi~DPPR~-Gl~-~~v~~~l~~~~--~~~~ivyvs 404 (457)
.++ ..++++.++.|+...+.+. ...||+|++|||+. +.. .++++.|.... ..+.++++.
T Consensus 87 ~l~--~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E 152 (183)
T PF03602_consen 87 KLG--LEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIE 152 (183)
T ss_dssp HHT---GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEE
T ss_pred HhC--CCcceeeeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEE
Confidence 853 3346899999988766543 36799999999986 443 67888887432 468889987
No 25
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=3.8e-13 Score=121.82 Aligned_cols=122 Identities=22% Similarity=0.243 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHhhCC-CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccC
Q 044572 282 TRAFDILLRKLQKYVP-YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADN 360 (457)
Q Consensus 282 ~~~~~~l~~~i~~~~~-~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~ 360 (457)
...+..++..+...-. +|.+|+|||||||.+++.++. .|+.+|+|||++++|++.+++|++.+ ..++.|+.+|+
T Consensus 28 ~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~-lGa~~V~~vdiD~~a~ei~r~N~~~l----~g~v~f~~~dv 102 (198)
T COG2263 28 APLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAAL-LGASRVLAVDIDPEALEIARANAEEL----LGDVEFVVADV 102 (198)
T ss_pred hHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHh-cCCcEEEEEecCHHHHHHHHHHHHhh----CCceEEEEcch
Confidence 3445555444432111 688999999999999999987 57899999999999999999999872 35799999999
Q ss_pred CcCcccccCCccEEEECCC----CCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHH
Q 044572 361 SIEPLSWLVGSDVLVVDPP----RKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILR 422 (457)
Q Consensus 361 ~~~~~~~~~~~D~vi~DPP----R~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~ 422 (457)
.+. ...+|+||+||| +.+.+..+++...+. ..+||.- ++...++|+..
T Consensus 103 ~~~----~~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~---s~vVYsi-------H~a~~~~f~~~ 154 (198)
T COG2263 103 SDF----RGKFDTVIMNPPFGSQRRHADRPFLLKALEI---SDVVYSI-------HKAGSRDFVEK 154 (198)
T ss_pred hhc----CCccceEEECCCCccccccCCHHHHHHHHHh---hheEEEe-------eccccHHHHHH
Confidence 875 357899999999 567777777655554 4788864 33345666654
No 26
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=7e-14 Score=137.56 Aligned_cols=109 Identities=17% Similarity=0.201 Sum_probs=89.2
Q ss_pred eeeeEEEEECCCCCCCCCHHHHHHHHHHHHhhCCCCC-eEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHH
Q 044572 264 NVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGA-SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTV 342 (457)
Q Consensus 264 ~~~g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~~~~~-~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na 342 (457)
.+.|++|.++++.+.. ++.++.|++.+...+.... +|||+|||||.+++.+|......+|+|+|+|++|++.|++|+
T Consensus 77 ~f~gl~~~v~~~vliP--r~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na 154 (280)
T COG2890 77 EFGGLRFKVDEGVLIP--RPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENA 154 (280)
T ss_pred eecceeeeeCCCceec--CCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHH
Confidence 3679999999999986 6677888887664333233 799999999999999998765569999999999999999999
Q ss_pred hhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCC
Q 044572 343 SRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPR 380 (457)
Q Consensus 343 ~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR 380 (457)
+.+ +. .++.++.+|.++.+. ++||+||.|||+
T Consensus 155 ~~~--~l-~~~~~~~~dlf~~~~---~~fDlIVsNPPY 186 (280)
T COG2890 155 ERN--GL-VRVLVVQSDLFEPLR---GKFDLIVSNPPY 186 (280)
T ss_pred HHc--CC-ccEEEEeeecccccC---CceeEEEeCCCC
Confidence 984 33 677788888776543 489999999997
No 27
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.51 E-value=2.5e-13 Score=134.30 Aligned_cols=120 Identities=18% Similarity=0.195 Sum_probs=95.2
Q ss_pred EEEeeccCeEEEeeeeEEEEECCCCCCCCCHHHHHHHHHHHHhhCC--C-CCeEEEEcccccHHHHHHHhhCCCCEEEEE
Q 044572 252 WRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVP--Y-GASVTDLYAGAGVIGLSLAAARKCRSVKCV 328 (457)
Q Consensus 252 ~~~l~G~~~~~~~~~g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~~--~-~~~vLDl~cG~G~~sl~lA~~~~~~~V~gV 328 (457)
..++.|... +.|++|.++++.|+ ++..++.|+..+.+.+. . ..+|||+|||+|.+++.++......+|+|+
T Consensus 71 l~yi~g~~~----f~g~~f~v~~~vli--Pr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~av 144 (284)
T TIGR00536 71 VAYLLGSKE----FYGLEFFVNEHVLI--PRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAV 144 (284)
T ss_pred HHHHhCcce----EcCeEEEECCCCcC--CCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEE
Confidence 344556544 56899999999998 57788888888876542 2 268999999999999999986544689999
Q ss_pred eCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCC
Q 044572 329 EINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRK 381 (457)
Q Consensus 329 E~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~ 381 (457)
|+|++|++.|++|++.++ ..++++|+++|+.+.+. ...||+||.|||+.
T Consensus 145 Dis~~al~~a~~n~~~~~--~~~~v~~~~~d~~~~~~--~~~fDlIvsNPPyi 193 (284)
T TIGR00536 145 DISPDALAVAEENAEKNQ--LEHRVEFIQSNLFEPLA--GQKIDIIVSNPPYI 193 (284)
T ss_pred ECCHHHHHHHHHHHHHcC--CCCcEEEEECchhccCc--CCCccEEEECCCCC
Confidence 999999999999998743 23469999999876432 13799999999975
No 28
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.48 E-value=1.1e-12 Score=130.79 Aligned_cols=177 Identities=16% Similarity=0.169 Sum_probs=120.8
Q ss_pred HHHHHHHHHHcCCCCCCCceeEEEEEEeecCCCCcccCCeEEEeeccC-eEE-EeeeeEEEEECCC-CCC-CCCHHHHHH
Q 044572 212 LESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGET-DFW-ENVGGIDISLAPS-SFG-QANTRAFDI 287 (457)
Q Consensus 212 ~~~l~~~l~~~~~~~~~~~~i~si~~~~~~~~~~~~~~~~~~~l~G~~-~~~-~~~~g~~~~i~~~-~Ff-Q~n~~~~~~ 287 (457)
...+++.++.. .+.+.++|.....-.+... -..+++|+|+. ..+ .+.+|+.|++|.. .|| .-| .+|+
T Consensus 109 ~~~i~~ai~~~------~~~vk~V~~k~~~v~G~~R-~~~le~laGe~~teTihrE~G~~f~vD~~Kv~Fsprl--~~ER 179 (341)
T COG2520 109 KREIAEAILRV------HGKVKAVLLKEGPVAGEFR-VPRLEVLAGERRTETIHRENGCRFKVDVAKVYFSPRL--STER 179 (341)
T ss_pred HHHHHHHHHhh------ccCeeEEEEecCccCCeEe-ccceEEeecCCCceEEEecCCEEEEEchHHeEECCCc--hHHH
Confidence 34566666532 3457788765442222222 23589999998 333 4678999999963 444 434 3443
Q ss_pred HHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc
Q 044572 288 LLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW 367 (457)
Q Consensus 288 l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~ 367 (457)
..+.+.+.+|++|+|+|||.|-|++++|+.+. .+|+|+|+||.|++.+++|+++|+ ....+..++||+.+...+.
T Consensus 180 --~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~-~~V~A~diNP~A~~~L~eNi~LN~--v~~~v~~i~gD~rev~~~~ 254 (341)
T COG2520 180 --ARVAELVKEGETVLDMFAGVGPFSIPIAKKGR-PKVYAIDINPDAVEYLKENIRLNK--VEGRVEPILGDAREVAPEL 254 (341)
T ss_pred --HHHHhhhcCCCEEEEccCCcccchhhhhhcCC-ceEEEEecCHHHHHHHHHHHHhcC--ccceeeEEeccHHHhhhcc
Confidence 34445556799999999999999999998644 449999999999999999999843 3344999999998876553
Q ss_pred cCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 368 LVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 368 ~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
..+|-|+++=|-.. +.-+-.++..++..+.+.|-.
T Consensus 255 -~~aDrIim~~p~~a-~~fl~~A~~~~k~~g~iHyy~ 289 (341)
T COG2520 255 -GVADRIIMGLPKSA-HEFLPLALELLKDGGIIHYYE 289 (341)
T ss_pred -ccCCEEEeCCCCcc-hhhHHHHHHHhhcCcEEEEEe
Confidence 67999999888532 222333444444455665654
No 29
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.45 E-value=8.8e-13 Score=134.39 Aligned_cols=136 Identities=16% Similarity=0.115 Sum_probs=99.8
Q ss_pred eeEEEEEC--CCCCCC----CCHHHHHHHHHHHHhhCCC--CCeEEEEcccccHHHHHHHhhC-CCCEEEEEeCCHHHHH
Q 044572 266 GGIDISLA--PSSFGQ----ANTRAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAAAR-KCRSVKCVEINKESQL 336 (457)
Q Consensus 266 ~g~~~~i~--~~~FfQ----~n~~~~~~l~~~i~~~~~~--~~~vLDl~cG~G~~sl~lA~~~-~~~~V~gVE~~~~av~ 336 (457)
+..+|.++ ...||- .||...-.+++...+...+ +-+|||+|||+|.+|+.++... ++++|+++|+|++|++
T Consensus 4 G~~~i~~p~~~~vFYNP~~~~nRDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~ 83 (374)
T TIGR00308 4 GKAEILVPKKETVFYNPRMQFNRDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVE 83 (374)
T ss_pred ceEEEEecCCCCcccCchhhccccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHH
Confidence 44555553 357873 3555554444443332211 2489999999999999999863 6789999999999999
Q ss_pred HHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEecc
Q 044572 337 SFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSE 406 (457)
Q Consensus 337 ~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~ 406 (457)
.+++|++.| ...+++++++|+...+......||+|++||+ |.....++.+......++++|++++
T Consensus 84 ~i~~N~~~N---~~~~~~v~~~Da~~~l~~~~~~fDvIdlDPf--Gs~~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 84 SIKNNVEYN---SVENIEVPNEDAANVLRYRNRKFHVIDIDPF--GTPAPFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred HHHHHHHHh---CCCcEEEEchhHHHHHHHhCCCCCEEEeCCC--CCcHHHHHHHHHhcccCCEEEEEec
Confidence 999999984 3457899999998876543457999999995 6655677666655457889999853
No 30
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.45 E-value=3.6e-13 Score=142.93 Aligned_cols=122 Identities=13% Similarity=0.110 Sum_probs=97.7
Q ss_pred eEEEeeccCeEEEeeeeEEEEECCCCCCCCCHHHHHHHHHHHHhhCC--------------------------CCCeEEE
Q 044572 251 RWRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVP--------------------------YGASVTD 304 (457)
Q Consensus 251 ~~~~l~G~~~~~~~~~g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~~--------------------------~~~~vLD 304 (457)
+..+|.|... +.|++|.|+++.+.. +..+|.|++.+++.+. ++.+|||
T Consensus 71 PlqYI~G~~~----F~g~~f~V~~~VLIP--RpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLD 144 (506)
T PRK01544 71 PIAYITGVKE----FYSREFIVNKHVLIP--RSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILE 144 (506)
T ss_pred CHHHHhCcCE----EcCcEEEeCCCcccC--CCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEE
Confidence 4455667665 579999999999996 7788999988865431 2358999
Q ss_pred EcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCC
Q 044572 305 LYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKG 382 (457)
Q Consensus 305 l~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~G 382 (457)
+|||+|.+++.++......+|+|+|+|+.|++.|++|++.+ +..++++++++|+.+.+. ...||+||.|||+..
T Consensus 145 lG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~--~l~~~v~~~~~D~~~~~~--~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 145 LGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKY--EVTDRIQIIHSNWFENIE--KQKFDFIVSNPPYIS 218 (506)
T ss_pred ccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHc--CCccceeeeecchhhhCc--CCCccEEEECCCCCC
Confidence 99999999999987655569999999999999999999874 334579999999865432 247999999999753
No 31
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.44 E-value=9.6e-13 Score=125.62 Aligned_cols=123 Identities=20% Similarity=0.177 Sum_probs=94.1
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc-CCccEEEE
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL-VGSDVLVV 376 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~-~~~D~vi~ 376 (457)
...+|||+|||+|.+++.+|++....+|+|||+++++++.|++|++.| ...++++++++|+..+..... .+||+||+
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln--~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALN--PLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhC--cchhceeEehhhHHHhhhcccccccCEEEe
Confidence 478999999999999999998644479999999999999999999984 466899999999988755433 45999999
Q ss_pred CCCCCCc--------------------cHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhcc
Q 044572 377 DPPRKGL--------------------DSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASV 428 (457)
Q Consensus 377 DPPR~Gl--------------------~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~~ 428 (457)
|||+.-. ..++++....+-.+++.+++ |.+.....+|+++++...-
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~------V~r~erl~ei~~~l~~~~~ 187 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF------VHRPERLAEIIELLKSYNL 187 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE------EecHHHHHHHHHHHHhcCC
Confidence 9996321 11344444444345555555 4577788899999888543
No 32
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.38 E-value=4.4e-12 Score=120.28 Aligned_cols=129 Identities=16% Similarity=0.092 Sum_probs=94.5
Q ss_pred eEEEEECCCCCCCCCHHHHHHHHHHHHhhC--CCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHh
Q 044572 267 GIDISLAPSSFGQANTRAFDILLRKLQKYV--PYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVS 343 (457)
Q Consensus 267 g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~--~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~ 343 (457)
+..|.-.+..|.+.+......++..+.+++ .++.+|||+|||+|.++..+|+..+ ..+|++||+++++++.|++|++
T Consensus 44 ~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~ 123 (215)
T TIGR00080 44 EYAYVDTPLEIGYGQTISAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLR 123 (215)
T ss_pred hhCcCCCCcccCCCCEechHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 344555566777666555556666666654 3789999999999999999998644 2469999999999999999998
Q ss_pred hCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEE
Q 044572 344 RLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKS 403 (457)
Q Consensus 344 ~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyv 403 (457)
.+ +.+|++++++|+.+.... ...||+|++|++...+...+.+ .++ +++.+++
T Consensus 124 ~~---g~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~~~~~~~~~~~~---~L~-~gG~lv~ 175 (215)
T TIGR00080 124 KL---GLDNVIVIVGDGTQGWEP-LAPYDRIYVTAAGPKIPEALID---QLK-EGGILVM 175 (215)
T ss_pred HC---CCCCeEEEECCcccCCcc-cCCCCEEEEcCCcccccHHHHH---hcC-cCcEEEE
Confidence 74 346899999999765432 3579999999987776654433 355 4444444
No 33
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.37 E-value=2.1e-11 Score=117.85 Aligned_cols=111 Identities=24% Similarity=0.252 Sum_probs=88.4
Q ss_pred eeeEEEEECCCCCCCCCHHHHHHHHHHHHhhCC-CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHh
Q 044572 265 VGGIDISLAPSSFGQANTRAFDILLRKLQKYVP-YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343 (457)
Q Consensus 265 ~~g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~~-~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~ 343 (457)
+.+..|.+++..|.. +..++.++..+.+.+. .+.+|||+|||+|.+++.++......+|+|+|+++.+++.|++|++
T Consensus 55 ~~~~~~~~~~~~~~p--~~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~ 132 (251)
T TIGR03534 55 FYGLDFKVSPGVLIP--RPDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAA 132 (251)
T ss_pred EeceEEEECCCcccC--CCChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence 456778888888864 4456677777776654 3568999999999999999986545699999999999999999998
Q ss_pred hCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCC
Q 044572 344 RLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKG 382 (457)
Q Consensus 344 ~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~G 382 (457)
.+ ...+++++++|+.+... .+.||+|+.|||+..
T Consensus 133 ~~---~~~~~~~~~~d~~~~~~--~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 133 RL---GLDNVTFLQSDWFEPLP--GGKFDLIVSNPPYIP 166 (251)
T ss_pred Hc---CCCeEEEEECchhccCc--CCceeEEEECCCCCc
Confidence 74 33579999999876432 357999999999764
No 34
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.36 E-value=2.3e-12 Score=109.63 Aligned_cols=81 Identities=22% Similarity=0.230 Sum_probs=66.3
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc-cCCccEEEEC
Q 044572 299 GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW-LVGSDVLVVD 377 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~-~~~~D~vi~D 377 (457)
|.+|||+|||+|.+.+.+++.. ..+++|+|+++.+++.|++|+..+ ...++++++++|+.+..... ..+||+|+.|
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRN--GLDDRVEVIVGDARDLPEPLPDGKFDLIVTN 77 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHC--TTTTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHc--cCCceEEEEECchhhchhhccCceeEEEEEC
Confidence 5689999999999999999875 579999999999999999999884 34468999999997765222 3679999999
Q ss_pred CCCCC
Q 044572 378 PPRKG 382 (457)
Q Consensus 378 PPR~G 382 (457)
||+..
T Consensus 78 pP~~~ 82 (117)
T PF13659_consen 78 PPYGP 82 (117)
T ss_dssp -STTS
T ss_pred CCCcc
Confidence 99864
No 35
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.35 E-value=7.7e-12 Score=105.43 Aligned_cols=104 Identities=16% Similarity=0.139 Sum_probs=76.1
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD 377 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D 377 (457)
++.+|||+|||+|.+++.+++.....+|+|||+|+++++.|++|+... ...++++++++|+ .........||+|+++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~ 77 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEE--GLSDRITFVQGDA-EFDPDFLEPFDLVICS 77 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHT--TTTTTEEEEESCC-HGGTTTSSCEEEEEEC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhc--CCCCCeEEEECcc-ccCcccCCCCCEEEEC
Confidence 478999999999999999998434568999999999999999999542 3558999999999 3333345679999998
Q ss_pred C-CCCCcc-----HHHHHHHHhcCCCCcEEEEe
Q 044572 378 P-PRKGLD-----SSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 378 P-PR~Gl~-----~~v~~~l~~~~~~~~ivyvs 404 (457)
- --..+- .++++.+.+.-.+++.+.++
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 7 211111 13455555443456666654
No 36
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.33 E-value=6e-12 Score=119.46 Aligned_cols=122 Identities=22% Similarity=0.279 Sum_probs=95.9
Q ss_pred EEEeeccCeEEEeeeeEEEEECCCCCCCCCHHHHHHHHHHHHhhCC-----CCCeEEEEcccccHHHHHHHhhCCCCEEE
Q 044572 252 WRHLLGETDFWENVGGIDISLAPSSFGQANTRAFDILLRKLQKYVP-----YGASVTDLYAGAGVIGLSLAAARKCRSVK 326 (457)
Q Consensus 252 ~~~l~G~~~~~~~~~g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~~-----~~~~vLDl~cG~G~~sl~lA~~~~~~~V~ 326 (457)
.+++.|... ++++++...|+.|+. +..+|.+++++.+.+. .+..+||+|||+|.+++.++..-+-..|+
T Consensus 103 lQYIlg~~~----F~~l~l~~~pgVlIP--RpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~ 176 (328)
T KOG2904|consen 103 LQYILGSQP----FGDLDLVCKPGVLIP--RPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVT 176 (328)
T ss_pred hhheeccCc----cCCceEEecCCeeec--CccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEE
Confidence 344555543 689999999999996 7788999999988764 46689999999999999999765556899
Q ss_pred EEeCCHHHHHHHHHHHhhCCCCCCCcEEEE----EccCCcCcccccCCccEEEECCCCC
Q 044572 327 CVEINKESQLSFEKTVSRLPKSVDGNISWH----NADNSIEPLSWLVGSDVLVVDPPRK 381 (457)
Q Consensus 327 gVE~~~~av~~A~~Na~~~~~~~~~nv~~~----~~d~~~~~~~~~~~~D~vi~DPPR~ 381 (457)
|||.|+.|+..|.+|++++. ....+..+ .+|+........+..|+++.|||+.
T Consensus 177 AiD~S~~Ai~La~eN~qr~~--l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI 233 (328)
T KOG2904|consen 177 AIDVSKAAIKLAKENAQRLK--LSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYI 233 (328)
T ss_pred EEeccHHHHHHHHHHHHHHh--hcCceEEEecccccccccccccccCceeEEecCCCcc
Confidence 99999999999999999854 34566666 4454443322346799999999973
No 37
>PRK14967 putative methyltransferase; Provisional
Probab=99.33 E-value=3.9e-11 Score=114.48 Aligned_cols=106 Identities=23% Similarity=0.245 Sum_probs=80.2
Q ss_pred eEEEEECCCCCCCCCHHHHHHHHHHHHhh-CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhC
Q 044572 267 GIDISLAPSSFGQANTRAFDILLRKLQKY-VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRL 345 (457)
Q Consensus 267 g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~-~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~ 345 (457)
+..+..+++.|.... .++.+.+.+... +.++.+|||+|||+|.+++.+++. ++.+|+++|+++.+++.|++|++.+
T Consensus 6 ~~~~~~~~g~~~p~~--ds~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~ 82 (223)
T PRK14967 6 PDALLRAPGVYRPQE--DTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLA 82 (223)
T ss_pred CceeecCCCCcCCCC--cHHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHh
Confidence 566777777775432 334455554432 346789999999999999999974 4569999999999999999999873
Q ss_pred CCCCCCcEEEEEccCCcCcccccCCccEEEECCCCC
Q 044572 346 PKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRK 381 (457)
Q Consensus 346 ~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~ 381 (457)
+ .+++++.+|+.+.+. ...||+|++|||+.
T Consensus 83 ~----~~~~~~~~d~~~~~~--~~~fD~Vi~npPy~ 112 (223)
T PRK14967 83 G----VDVDVRRGDWARAVE--FRPFDVVVSNPPYV 112 (223)
T ss_pred C----CeeEEEECchhhhcc--CCCeeEEEECCCCC
Confidence 2 258899999876432 25799999999964
No 38
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.33 E-value=4e-11 Score=122.27 Aligned_cols=134 Identities=15% Similarity=0.145 Sum_probs=93.0
Q ss_pred eEEEEECCCCCCCCCHHH-HHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhC
Q 044572 267 GIDISLAPSSFGQANTRA-FDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRL 345 (457)
Q Consensus 267 g~~~~i~~~~FfQ~n~~~-~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~ 345 (457)
++++.-.++.|....-.. ++.|++.+-. ..+.+|||+|||+|.+++.+++.....+|++||+|+.|++.|++|++.|
T Consensus 198 ~~~~~~~~gVFs~~~LD~GtrllL~~lp~--~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n 275 (378)
T PRK15001 198 DWTIHNHANVFSRTGLDIGARFFMQHLPE--NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETN 275 (378)
T ss_pred eEEEEecCCccCCCCcChHHHHHHHhCCc--ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence 455666689999876543 4444443222 1246999999999999999998755579999999999999999999875
Q ss_pred CCCCCCcEEEEEccCCcCcccccCCccEEEECCCCC-C--ccH----HHHHHHHhcCCCCcEEEEe
Q 044572 346 PKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRK-G--LDS----SLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 346 ~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~-G--l~~----~v~~~l~~~~~~~~ivyvs 404 (457)
+.....+++++.+|+.+... ..+||+|+.|||.. | ... .+++...+.-.+++.+|+.
T Consensus 276 ~~~~~~~v~~~~~D~l~~~~--~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 276 MPEALDRCEFMINNALSGVE--PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred CcccCceEEEEEccccccCC--CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 32223478999999865432 24799999999953 3 222 2333333333466667765
No 39
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.31 E-value=5.8e-11 Score=120.12 Aligned_cols=142 Identities=15% Similarity=0.170 Sum_probs=99.7
Q ss_pred eeeEEEEECCCCCCCCCHHHH-HHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHh
Q 044572 265 VGGIDISLAPSSFGQANTRAF-DILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343 (457)
Q Consensus 265 ~~g~~~~i~~~~FfQ~n~~~~-~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~ 343 (457)
+.++.+...|+.|+|.+.... +.|++.+... ...+|||+|||+|.+++.++++....+|+++|+|+.|++.|++|++
T Consensus 164 ~~~l~i~~~pgvFs~~~lD~gt~lLl~~l~~~--~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~ 241 (342)
T PRK09489 164 VDGLTVKTLPGVFSRDGLDVGSQLLLSTLTPH--TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLA 241 (342)
T ss_pred cCCEEEEeCCCCCCCCCCCHHHHHHHHhcccc--CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH
Confidence 467889999999999887544 5555544332 2458999999999999999986545689999999999999999998
Q ss_pred hCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCC-Ccc------HHHHHHHHh-cCCCCcEEEEeccCCCCCchhc
Q 044572 344 RLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRK-GLD------SSLVHALQS-IGSAERKAKSLSESSSSMVKEE 415 (457)
Q Consensus 344 ~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~-Gl~------~~v~~~l~~-~~~~~~ivyvs~~~~~c~~~~~ 415 (457)
.++ . ..+++.+|+.... .+.||+||.|||.. |.. ..++....+ ++ +++.+++- .+....
T Consensus 242 ~n~---l-~~~~~~~D~~~~~---~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~Lk-pgG~L~iV-----an~~l~ 308 (342)
T PRK09489 242 ANG---L-EGEVFASNVFSDI---KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLN-SGGELRIV-----ANAFLP 308 (342)
T ss_pred HcC---C-CCEEEEccccccc---CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcC-cCCEEEEE-----EeCCCC
Confidence 842 2 3477888876532 36799999999953 322 234444433 45 55555444 444444
Q ss_pred hhhHHH
Q 044572 416 KRPWIL 421 (457)
Q Consensus 416 ~~~~~~ 421 (457)
..++++
T Consensus 309 y~~~l~ 314 (342)
T PRK09489 309 YPDLLD 314 (342)
T ss_pred hHHHHH
Confidence 555554
No 40
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=3.9e-11 Score=116.97 Aligned_cols=130 Identities=20% Similarity=0.226 Sum_probs=93.6
Q ss_pred eeEEEEECCCCCCCCCHHH-HHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572 266 GGIDISLAPSSFGQANTRA-FDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR 344 (457)
Q Consensus 266 ~g~~~~i~~~~FfQ~n~~~-~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~ 344 (457)
.+++|.=.|+.|.-..... ++.|++.+.. ..+.+|||+|||.|.+|+.+|+..+-.+|+.+|+|..||+.|++|++.
T Consensus 127 ~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~--~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~ 204 (300)
T COG2813 127 HELTFKTLPGVFSRDKLDKGSRLLLETLPP--DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAA 204 (300)
T ss_pred CceEEEeCCCCCcCCCcChHHHHHHHhCCc--cCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHH
Confidence 4677888899998776544 4444443322 134599999999999999999987678999999999999999999998
Q ss_pred CCCCCCCcEEEEEccCCcCcccccCCccEEEECCC-CCCccH------HH-HHHHHhcCCCCcEEEE
Q 044572 345 LPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPP-RKGLDS------SL-VHALQSIGSAERKAKS 403 (457)
Q Consensus 345 ~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPP-R~Gl~~------~v-~~~l~~~~~~~~ivyv 403 (457)
| ..++..+...|+.+-.. .+||+||.||| +.|..- ++ .++...+.+.+.+-.|
T Consensus 205 N---~~~~~~v~~s~~~~~v~---~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iV 265 (300)
T COG2813 205 N---GVENTEVWASNLYEPVE---GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIV 265 (300)
T ss_pred c---CCCccEEEEeccccccc---ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEE
Confidence 3 34555677788766543 48999999999 555432 22 3333345555555555
No 41
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.30 E-value=4.3e-11 Score=117.10 Aligned_cols=83 Identities=19% Similarity=0.142 Sum_probs=68.8
Q ss_pred CCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV 375 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi 375 (457)
.+|++|||+|||+|..++.+|...+ ...|+++|+++.+++.+++|++.+ +..+++++++|+..... ....||+|+
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~---g~~~v~~~~~D~~~~~~-~~~~fD~Vl 145 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRC---GVLNVAVTNFDGRVFGA-AVPKFDAIL 145 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc---CCCcEEEecCCHHHhhh-hccCCCEEE
Confidence 4789999999999999999987542 358999999999999999999984 34679999999865432 234699999
Q ss_pred ECCCCCCc
Q 044572 376 VDPPRKGL 383 (457)
Q Consensus 376 ~DPPR~Gl 383 (457)
+|||.+|.
T Consensus 146 ~D~Pcsg~ 153 (264)
T TIGR00446 146 LDAPCSGE 153 (264)
T ss_pred EcCCCCCC
Confidence 99998764
No 42
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.30 E-value=2.5e-11 Score=119.04 Aligned_cols=111 Identities=21% Similarity=0.232 Sum_probs=88.4
Q ss_pred eeeEEEEECCCCCCCCCHHHHHHHHHHHHhhC--CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHH
Q 044572 265 VGGIDISLAPSSFGQANTRAFDILLRKLQKYV--PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTV 342 (457)
Q Consensus 265 ~~g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~--~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na 342 (457)
+.+..|.++++.|.. +..++.+++.+.... .++.+|||+|||+|.+++.++......+|+|+|+++.+++.|++|+
T Consensus 75 f~~~~~~~~~~~lip--r~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~ 152 (275)
T PRK09328 75 FWGLDFKVSPGVLIP--RPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNA 152 (275)
T ss_pred EcCcEEEECCCceeC--CCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 457789999888864 556677777776443 2567999999999999999998754569999999999999999999
Q ss_pred hhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCC
Q 044572 343 SRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKG 382 (457)
Q Consensus 343 ~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~G 382 (457)
+. ....+++++.+|+.+... ...||+|+.|||+..
T Consensus 153 ~~---~~~~~i~~~~~d~~~~~~--~~~fD~Iv~npPy~~ 187 (275)
T PRK09328 153 KH---GLGARVEFLQGDWFEPLP--GGRFDLIVSNPPYIP 187 (275)
T ss_pred Hh---CCCCcEEEEEccccCcCC--CCceeEEEECCCcCC
Confidence 82 234689999999865432 257999999999753
No 43
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.30 E-value=4.4e-12 Score=114.10 Aligned_cols=80 Identities=21% Similarity=0.239 Sum_probs=59.8
Q ss_pred CeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc-CC-ccEEEEC
Q 044572 300 ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL-VG-SDVLVVD 377 (457)
Q Consensus 300 ~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~-~~-~D~vi~D 377 (457)
+.|+|+|||.|.-++.+|+. +.+|+|||+++.-++.|++|++.. +..+||+|+++|+.+.+.... .. +|+|++|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~--~~~Viaidid~~~~~~a~hNa~vY--Gv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART--FDRVIAIDIDPERLECAKHNAEVY--GVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT--T-EEEEEES-HHHHHHHHHHHHHT--T-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHc--CCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 46999999999999999986 569999999999999999999985 356799999999988665432 22 8999999
Q ss_pred CCCCCc
Q 044572 378 PPRKGL 383 (457)
Q Consensus 378 PPR~Gl 383 (457)
||..|.
T Consensus 77 PPWGGp 82 (163)
T PF09445_consen 77 PPWGGP 82 (163)
T ss_dssp --BSSG
T ss_pred CCCCCc
Confidence 997663
No 44
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.28 E-value=4.5e-11 Score=125.46 Aligned_cols=84 Identities=24% Similarity=0.219 Sum_probs=69.9
Q ss_pred CCCCeEEEEcccccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAAR-KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV 375 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~-~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi 375 (457)
.++++|||+|||+|.+++.+|... +..+|+|+|+++.+++.+++|++.+ +..+++++++|+.+....+.+.||+|+
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~---g~~~v~~~~~D~~~~~~~~~~~fD~Vl 325 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRL---GLTNIETKALDARKVHEKFAEKFDKIL 325 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc---CCCeEEEEeCCcccccchhcccCCEEE
Confidence 468899999999999999999764 3469999999999999999999884 335699999999775432335799999
Q ss_pred ECCCCCCc
Q 044572 376 VDPPRKGL 383 (457)
Q Consensus 376 ~DPPR~Gl 383 (457)
+|||..|.
T Consensus 326 ~D~Pcsg~ 333 (444)
T PRK14902 326 VDAPCSGL 333 (444)
T ss_pred EcCCCCCC
Confidence 99998764
No 45
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.28 E-value=1.8e-11 Score=120.79 Aligned_cols=144 Identities=19% Similarity=0.196 Sum_probs=97.3
Q ss_pred eeEEEEECCC-CCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572 266 GGIDISLAPS-SFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR 344 (457)
Q Consensus 266 ~g~~~~i~~~-~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~ 344 (457)
+...+.++|+ +|-..+.+.+...++.+.++..+|++|||+|||||.+++.+++ .|+++|+|+|+++.|++.|++|++.
T Consensus 128 ~~~~I~idPg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~k-lGA~~v~a~DiDp~Av~~a~~N~~~ 206 (295)
T PF06325_consen 128 DEIVIEIDPGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAK-LGAKKVVAIDIDPLAVEAARENAEL 206 (295)
T ss_dssp TSEEEEESTTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHH-TTBSEEEEEESSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCcccCCCCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHH-cCCCeEEEecCCHHHHHHHHHHHHH
Confidence 4667899995 7777778888888888888877899999999999999999998 4789999999999999999999998
Q ss_pred CCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHH
Q 044572 345 LPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRA 423 (457)
Q Consensus 345 ~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~ 423 (457)
| +..+++.+. ...+.. ..+||+|+.|==..-+- .+...+..+-.+++.+.+| =........+....
T Consensus 207 N--~~~~~~~v~--~~~~~~---~~~~dlvvANI~~~vL~-~l~~~~~~~l~~~G~lIlS-----GIl~~~~~~v~~a~ 272 (295)
T PF06325_consen 207 N--GVEDRIEVS--LSEDLV---EGKFDLVVANILADVLL-ELAPDIASLLKPGGYLILS-----GILEEQEDEVIEAY 272 (295)
T ss_dssp T--T-TTCEEES--CTSCTC---CS-EEEEEEES-HHHHH-HHHHHCHHHEEEEEEEEEE-----EEEGGGHHHHHHHH
T ss_pred c--CCCeeEEEE--Eecccc---cccCCEEEECCCHHHHH-HHHHHHHHhhCCCCEEEEc-----cccHHHHHHHHHHH
Confidence 5 344455442 222222 26899999876432111 2233333333366666666 23334445555544
No 46
>PLN02672 methionine S-methyltransferase
Probab=99.27 E-value=2.7e-11 Score=136.57 Aligned_cols=115 Identities=17% Similarity=0.055 Sum_probs=91.8
Q ss_pred eeeeEEEEECCCCCCCCCHHHHHHHHHHHHhhCC----CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHH
Q 044572 264 NVGGIDISLAPSSFGQANTRAFDILLRKLQKYVP----YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339 (457)
Q Consensus 264 ~~~g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~~----~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~ 339 (457)
.+.|++|.+.|+.|.. ++.++.+++.+ +..+ ++.+|||+|||+|.+++.+|......+|+|+|+|++|++.|+
T Consensus 83 ~F~~l~~~V~p~VLIP--RpeTE~lve~L-~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~ 159 (1082)
T PLN02672 83 NRKKLTMMEIPSIFIP--EDWSFTFYEGL-NRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAW 159 (1082)
T ss_pred EecCCceeeCCCcccC--chhHHHHHHHH-HhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence 4679999999999986 68888888874 3322 246899999999999999998765569999999999999999
Q ss_pred HHHhhCCC-------------CCCCcEEEEEccCCcCcccccCCccEEEECCCCC
Q 044572 340 KTVSRLPK-------------SVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRK 381 (457)
Q Consensus 340 ~Na~~~~~-------------~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~ 381 (457)
+|++.|+. +..++++|+++|+.+........||+||.|||+-
T Consensus 160 ~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI 214 (1082)
T PLN02672 160 INLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQI 214 (1082)
T ss_pred HHHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcC
Confidence 99987531 1235799999999875532113699999999974
No 47
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=5.5e-11 Score=116.47 Aligned_cols=133 Identities=17% Similarity=0.185 Sum_probs=94.8
Q ss_pred eeEEEEECCC-CCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572 266 GGIDISLAPS-SFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR 344 (457)
Q Consensus 266 ~g~~~~i~~~-~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~ 344 (457)
+...++++|+ +|-+.+...+..-++++-+++.++.+|||+|||||.+++.+++ -|+++|+|+|+++.|++.|+.|+++
T Consensus 129 ~~~~i~lDPGlAFGTG~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~k-LGA~~v~g~DiDp~AV~aa~eNa~~ 207 (300)
T COG2264 129 DELNIELDPGLAFGTGTHPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAK-LGAKKVVGVDIDPQAVEAARENARL 207 (300)
T ss_pred CceEEEEccccccCCCCChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHH-cCCceEEEecCCHHHHHHHHHHHHH
Confidence 4667888885 7778777777777777777777899999999999999999998 4789999999999999999999998
Q ss_pred CCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 345 LPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 345 ~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
|+ ....++.-..+..+... ...||+||.|= -++....+...+...-.+++.+..|
T Consensus 208 N~--v~~~~~~~~~~~~~~~~--~~~~DvIVANI-LA~vl~~La~~~~~~lkpgg~lIlS 262 (300)
T COG2264 208 NG--VELLVQAKGFLLLEVPE--NGPFDVIVANI-LAEVLVELAPDIKRLLKPGGRLILS 262 (300)
T ss_pred cC--Cchhhhcccccchhhcc--cCcccEEEehh-hHHHHHHHHHHHHHHcCCCceEEEE
Confidence 42 22112222222222111 24799999876 3443344555555544466666666
No 48
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.25 E-value=3.1e-11 Score=126.30 Aligned_cols=84 Identities=20% Similarity=0.177 Sum_probs=69.6
Q ss_pred CCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc---cccCCcc
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL---SWLVGSD 372 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~---~~~~~~D 372 (457)
.+|++|||+|||+|..++.+|...+ ..+|+++|+++.+++.+++|++.+ +..|++++++|+.+... ...+.||
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~---g~~~v~~~~~D~~~~~~~~~~~~~~fD 327 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL---GLKSIKILAADSRNLLELKPQWRGYFD 327 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc---CCCeEEEEeCChhhcccccccccccCC
Confidence 3689999999999999999997632 358999999999999999999984 34679999999976532 1235799
Q ss_pred EEEECCCCCCc
Q 044572 373 VLVVDPPRKGL 383 (457)
Q Consensus 373 ~vi~DPPR~Gl 383 (457)
.|++|||.+|.
T Consensus 328 ~Vl~DaPCSg~ 338 (434)
T PRK14901 328 RILLDAPCSGL 338 (434)
T ss_pred EEEEeCCCCcc
Confidence 99999998764
No 49
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.23 E-value=7.8e-11 Score=105.41 Aligned_cols=104 Identities=15% Similarity=0.085 Sum_probs=78.7
Q ss_pred CCCeEEEEcccccHHHHHHHh-hCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572 298 YGASVTDLYAGAGVIGLSLAA-ARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV 376 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~-~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~ 376 (457)
++.+|||+|||+|.+++.++. .....+|+|||+|+++++.|+++++.+ ..+|++|+++|+.+....+...||+|+.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~---~~~ni~~~~~d~~~l~~~~~~~~D~I~~ 79 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKEL---GLDNIEFIQGDIEDLPQELEEKFDIIIS 79 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHT---TSTTEEEEESBTTCGCGCSSTTEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccc---cccccceEEeehhccccccCCCeeEEEE
Confidence 578999999999999999994 333568999999999999999999874 3458999999999832111268999999
Q ss_pred CCCCC--CccHHHHHHHHhcCCCCcEEEEe
Q 044572 377 DPPRK--GLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 377 DPPR~--Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
+.+.. .-...+++.+.++..++++++++
T Consensus 80 ~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~ 109 (152)
T PF13847_consen 80 NGVLHHFPDPEKVLKNIIRLLKPGGILIIS 109 (152)
T ss_dssp ESTGGGTSHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCchhhccCHHHHHHHHHHHcCCCcEEEEE
Confidence 98743 22335666666655567777765
No 50
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.23 E-value=2.5e-10 Score=103.91 Aligned_cols=101 Identities=18% Similarity=0.195 Sum_probs=81.6
Q ss_pred CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV 376 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~ 376 (457)
.+|++++|+|||||++++.+|......+|+|||.++++++..++|++++ +.+|++.+.||+.+.+... ..+|.||+
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~f---g~~n~~vv~g~Ap~~L~~~-~~~daiFI 108 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARF---GVDNLEVVEGDAPEALPDL-PSPDAIFI 108 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHh---CCCcEEEEeccchHhhcCC-CCCCEEEE
Confidence 4799999999999999999996655679999999999999999999984 3689999999999887654 37999999
Q ss_pred CCCCCCccHHHHHHHHhc-CCCCcEEEE
Q 044572 377 DPPRKGLDSSLVHALQSI-GSAERKAKS 403 (457)
Q Consensus 377 DPPR~Gl~~~v~~~l~~~-~~~~~ivyv 403 (457)
.=- .+++ ++++..... ++.+++|.=
T Consensus 109 GGg-~~i~-~ile~~~~~l~~ggrlV~n 134 (187)
T COG2242 109 GGG-GNIE-EILEAAWERLKPGGRLVAN 134 (187)
T ss_pred CCC-CCHH-HHHHHHHHHcCcCCeEEEE
Confidence 776 4444 566666654 444455443
No 51
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.22 E-value=1e-10 Score=122.03 Aligned_cols=84 Identities=25% Similarity=0.187 Sum_probs=69.2
Q ss_pred CCCCeEEEEcccccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAAR-KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV 375 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~-~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi 375 (457)
.+|.+|||+|||+|..++++|... +..+|+++|+++.+++.+++|++..+ .++++++++|+.+......+.||.|+
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g---~~~v~~~~~Da~~l~~~~~~~fD~Vl 312 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK---LSSIEIKIADAERLTEYVQDTFDRIL 312 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC---CCeEEEEECchhhhhhhhhccCCEEE
Confidence 478899999999999999999764 24599999999999999999999843 35799999998764322235799999
Q ss_pred ECCCCCCc
Q 044572 376 VDPPRKGL 383 (457)
Q Consensus 376 ~DPPR~Gl 383 (457)
+|||..|.
T Consensus 313 ~DaPCsg~ 320 (431)
T PRK14903 313 VDAPCTSL 320 (431)
T ss_pred ECCCCCCC
Confidence 99998654
No 52
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.22 E-value=3.8e-10 Score=109.56 Aligned_cols=126 Identities=22% Similarity=0.292 Sum_probs=89.6
Q ss_pred eeEEEEECCC-CCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572 266 GGIDISLAPS-SFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR 344 (457)
Q Consensus 266 ~g~~~~i~~~-~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~ 344 (457)
+...+.++|+ +|-....+.+..+++.+.....++.+|||+|||+|.+++.+++ .++.+|+|+|+|+.+++.|++|++.
T Consensus 86 ~~~~i~i~p~~afgtg~h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~-~g~~~v~giDis~~~l~~A~~n~~~ 164 (250)
T PRK00517 86 DEINIELDPGMAFGTGTHPTTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAK-LGAKKVLAVDIDPQAVEAARENAEL 164 (250)
T ss_pred CeEEEEECCCCccCCCCCHHHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHH
Confidence 3456788875 6666666777777777776666789999999999999998876 4566899999999999999999987
Q ss_pred CCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 345 LPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 345 ~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
+ +..+++.+..+|. .||+|+.|.-...+. .+++.+.+.-.+++.++++
T Consensus 165 ~--~~~~~~~~~~~~~---------~fD~Vvani~~~~~~-~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 165 N--GVELNVYLPQGDL---------KADVIVANILANPLL-ELAPDLARLLKPGGRLILS 212 (250)
T ss_pred c--CCCceEEEccCCC---------CcCEEEEcCcHHHHH-HHHHHHHHhcCCCcEEEEE
Confidence 4 2224454444332 699999986533222 3444444443467777776
No 53
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=5.4e-11 Score=102.84 Aligned_cols=125 Identities=22% Similarity=0.255 Sum_probs=95.4
Q ss_pred CHHHHHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEc
Q 044572 281 NTRAFDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNA 358 (457)
Q Consensus 281 n~~~~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~ 358 (457)
.+..+..|+..|.+-.. +|++++|||||+|.+++..+. -+...|+|+|++++|++.+.+|++... -++.+++.
T Consensus 29 ~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNaeEfE----vqidlLqc 103 (185)
T KOG3420|consen 29 RPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNAEEFE----VQIDLLQC 103 (185)
T ss_pred cHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhchHHhh----hhhheeee
Confidence 46778888888877544 689999999999999987775 567899999999999999999998742 35689999
Q ss_pred cCCcCcccccCCccEEEECCCC----CCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHH
Q 044572 359 DNSIEPLSWLVGSDVLVVDPPR----KGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWIL 421 (457)
Q Consensus 359 d~~~~~~~~~~~~D~vi~DPPR----~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~ 421 (457)
|..+.... .+.||.+|+|||- .|.+-+.+++..++. +.||. .++++.|+.+.
T Consensus 104 dildle~~-~g~fDtaviNppFGTk~~~aDm~fv~~al~~~---~~VyS-------LHKtSTRey~~ 159 (185)
T KOG3420|consen 104 DILDLELK-GGIFDTAVINPPFGTKKKGADMEFVSAALKVA---SAVYS-------LHKTSTREYRY 159 (185)
T ss_pred eccchhcc-CCeEeeEEecCCCCcccccccHHHHHHHHHHH---HHHHH-------HhcccHHHHHH
Confidence 98775443 2679999999993 467777776666553 14443 25666666554
No 54
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.21 E-value=4e-10 Score=111.69 Aligned_cols=147 Identities=14% Similarity=0.060 Sum_probs=99.5
Q ss_pred eeEEEEECCCCCCCCCHHHHHHH-HHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572 266 GGIDISLAPSSFGQANTRAFDIL-LRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR 344 (457)
Q Consensus 266 ~g~~~~i~~~~FfQ~n~~~~~~l-~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~ 344 (457)
+...+.++|+..|......+..+ ++.+..+..++++|||+|||+|.+++.+++ .++.+|+|||+++.|++.|++|++.
T Consensus 126 ~~~~i~ldpg~aFgtG~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~-~g~~~V~avDid~~al~~a~~n~~~ 204 (288)
T TIGR00406 126 DALIIMLDPGLAFGTGTHPTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALK-LGAAKVVGIDIDPLAVESARKNAEL 204 (288)
T ss_pred CcEEEEECCCCcccCCCCHHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHH
Confidence 56778999988776544444444 344444445789999999999999999887 4567999999999999999999987
Q ss_pred CCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHH
Q 044572 345 LPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAK 424 (457)
Q Consensus 345 ~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~ 424 (457)
+ +...++.+..++.... ...+||+|+.|.-...+. .++..+.+.-.+++.+++| .........+.....
T Consensus 205 n--~~~~~~~~~~~~~~~~---~~~~fDlVvan~~~~~l~-~ll~~~~~~LkpgG~li~s-----gi~~~~~~~v~~~~~ 273 (288)
T TIGR00406 205 N--QVSDRLQVKLIYLEQP---IEGKADVIVANILAEVIK-ELYPQFSRLVKPGGWLILS-----GILETQAQSVCDAYE 273 (288)
T ss_pred c--CCCcceEEEecccccc---cCCCceEEEEecCHHHHH-HHHHHHHHHcCCCcEEEEE-----eCcHhHHHHHHHHHH
Confidence 4 3334567777663322 135799999987533222 3444444444577778876 333344444444443
No 55
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.20 E-value=3.3e-10 Score=104.62 Aligned_cols=100 Identities=20% Similarity=0.140 Sum_probs=76.5
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD 377 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D 377 (457)
.+.+|||+|||+|.+++.+|......+|+|||.|+.+++.+++|++.+ +.+|++++++|+.+.. ..+.||+|+++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~---~~~~i~~i~~d~~~~~--~~~~fD~I~s~ 116 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAEL---GLNNVEIVNGRAEDFQ--HEEQFDVITSR 116 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHh---CCCCeEEEecchhhcc--ccCCccEEEeh
Confidence 488999999999999999987654568999999999999999999874 2357999999998752 23689999998
Q ss_pred CCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 378 PPRKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 378 PPR~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
. -..+ .++.+.+.++-.+++.+++.
T Consensus 117 ~-~~~~-~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 117 A-LASL-NVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred h-hhCH-HHHHHHHHHhcCCCCEEEEE
Confidence 6 2222 34556655543466666664
No 56
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.19 E-value=2.3e-10 Score=107.50 Aligned_cols=123 Identities=9% Similarity=-0.054 Sum_probs=92.0
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccC-CcCcccc-cCCccEEE
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADN-SIEPLSW-LVGSDVLV 375 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~-~~~~~~~-~~~~D~vi 375 (457)
++.+|||+|||+|.+++.+|......+|+|||+|+++++.|++|++.+ ...|++++++|+ ....... ...||+|+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~---~~~~v~~~~~d~~~~l~~~~~~~~~D~V~ 116 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEE---GLTNLRLLCGDAVEVLLDMFPDGSLDRIY 116 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHc---CCCCEEEEecCHHHHHHHHcCccccceEE
Confidence 578999999999999999987644468999999999999999999873 346899999998 4322112 25699999
Q ss_pred ECCCC---C-------CccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhcc
Q 044572 376 VDPPR---K-------GLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASV 428 (457)
Q Consensus 376 ~DPPR---~-------Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~~ 428 (457)
++.|. . .....+++.+.+.-++++.++++ +......+.+++.+.+.+.
T Consensus 117 ~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~-----~~~~~~~~~~~~~~~~~g~ 174 (202)
T PRK00121 117 LNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA-----TDWEGYAEYMLEVLSAEGG 174 (202)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE-----cCCHHHHHHHHHHHHhCcc
Confidence 86432 1 12345777777655688888887 7777777777877777653
No 57
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.18 E-value=2.6e-10 Score=119.76 Aligned_cols=108 Identities=16% Similarity=0.106 Sum_probs=82.8
Q ss_pred CCCCeEEEEcccccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAAR-KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV 375 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~-~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi 375 (457)
.+|++|||+|||+|..++.++... +..+|+|+|+++.+++.+++|++.+ +..+++++++|+.+... ...||+|+
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~---g~~~v~~~~~Da~~~~~--~~~fD~Vl 323 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL---GITIIETIEGDARSFSP--EEQPDAIL 323 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh---CCCeEEEEeCccccccc--CCCCCEEE
Confidence 368899999999999999988643 2358999999999999999999884 33579999999977542 24799999
Q ss_pred ECCCCCCccH------------------------HHHHHH-HhcCCCCcEEEEeccCCCCCchh
Q 044572 376 VDPPRKGLDS------------------------SLVHAL-QSIGSAERKAKSLSESSSSMVKE 414 (457)
Q Consensus 376 ~DPPR~Gl~~------------------------~v~~~l-~~~~~~~~ivyvs~~~~~c~~~~ 414 (457)
+|||..|... +++... ..+++.+.++|.+ |+...
T Consensus 324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst-----cs~~~ 382 (445)
T PRK14904 324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT-----CSIEP 382 (445)
T ss_pred EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe-----CCCCh
Confidence 9999877431 123322 2346778888887 77653
No 58
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.18 E-value=3.6e-10 Score=104.83 Aligned_cols=101 Identities=21% Similarity=0.130 Sum_probs=76.3
Q ss_pred CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572 296 VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV 375 (457)
Q Consensus 296 ~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi 375 (457)
++++.+|||+|||+|.+++.+|+.....+|+|||+++++++.|++|++.++ .++++++++|+.+... .+.||+|+
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~---l~~i~~~~~d~~~~~~--~~~fDlV~ 117 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELG---LKNVTVVHGRAEEFGQ--EEKFDVVT 117 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcC---CCCEEEEeccHhhCCC--CCCccEEE
Confidence 445899999999999999999975556799999999999999999998843 3569999999987543 45899999
Q ss_pred ECCCCCCccHHHHHHHHhcCCCCcEEEE
Q 044572 376 VDPPRKGLDSSLVHALQSIGSAERKAKS 403 (457)
Q Consensus 376 ~DPPR~Gl~~~v~~~l~~~~~~~~ivyv 403 (457)
++- .+--..+++.+.++-.+++.+++
T Consensus 118 ~~~--~~~~~~~l~~~~~~LkpGG~lv~ 143 (187)
T PRK00107 118 SRA--VASLSDLVELCLPLLKPGGRFLA 143 (187)
T ss_pred Ecc--ccCHHHHHHHHHHhcCCCeEEEE
Confidence 863 11123566665544345555554
No 59
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.17 E-value=7.2e-10 Score=103.78 Aligned_cols=104 Identities=13% Similarity=0.129 Sum_probs=76.9
Q ss_pred CCCCeEEEEcccccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAAR-KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV 375 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~-~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi 375 (457)
.++.+|||+|||+|.+++.+|+.. ...+|++||+++++++.|++|++.+ +..++++++.+|+.+.+......||.|+
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~--g~~~~v~~~~~d~~~~l~~~~~~~D~V~ 116 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF--GVLNNIVLIKGEAPEILFTINEKFDRIF 116 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh--CCCCCeEEEEechhhhHhhcCCCCCEEE
Confidence 368999999999999999998753 3468999999999999999999874 2346899999998775443336799999
Q ss_pred ECCCCCCccHHHHHHHH-hcCCCCcEEEE
Q 044572 376 VDPPRKGLDSSLVHALQ-SIGSAERKAKS 403 (457)
Q Consensus 376 ~DPPR~Gl~~~v~~~l~-~~~~~~~ivyv 403 (457)
++.....+. .+++.+. .+++.+++++.
T Consensus 117 ~~~~~~~~~-~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 117 IGGGSEKLK-EIISASWEIIKKGGRIVID 144 (198)
T ss_pred ECCCcccHH-HHHHHHHHHcCCCcEEEEE
Confidence 976433333 3455444 45544555543
No 60
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.16 E-value=1.2e-09 Score=101.21 Aligned_cols=101 Identities=16% Similarity=0.147 Sum_probs=74.9
Q ss_pred CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV 376 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~ 376 (457)
.++.+|||+|||+|.+++.+++.....+|+++|+++++++.|++|++.+ ...+++++++|+...+ ...||+|++
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~---~~~~i~~~~~d~~~~~---~~~~D~v~~ 103 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRF---GCGNIDIIPGEAPIEL---PGKADAIFI 103 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh---CCCCeEEEecCchhhc---CcCCCEEEE
Confidence 3678999999999999999998654469999999999999999999874 2357999999975322 357999999
Q ss_pred CCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 377 DPPRKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 377 DPPR~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
+-....+ .++++.+.+.-.+++.+++.
T Consensus 104 ~~~~~~~-~~~l~~~~~~Lk~gG~lv~~ 130 (187)
T PRK08287 104 GGSGGNL-TAIIDWSLAHLHPGGRLVLT 130 (187)
T ss_pred CCCccCH-HHHHHHHHHhcCCCeEEEEE
Confidence 8654333 34555444433356665553
No 61
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.16 E-value=2e-10 Score=105.82 Aligned_cols=104 Identities=18% Similarity=0.204 Sum_probs=71.1
Q ss_pred CCCCeEEEEcccccHHHHHHHhhCCCCE---------EEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAARKCRS---------VKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW 367 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~---------V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~ 367 (457)
.+++.|||.+||+|+|-+++|....... ++|+|+++++++.|++|++.. +....+.+.+.|+.+.. ..
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~a--g~~~~i~~~~~D~~~l~-~~ 103 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAA--GVEDYIDFIQWDARELP-LP 103 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHT--T-CGGEEEEE--GGGGG-GT
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhc--ccCCceEEEecchhhcc-cc
Confidence 4688999999999999999987644333 889999999999999999985 34467899999998765 12
Q ss_pred cCCccEEEECCCCC---CccH-------HHHHHHHhcCCCCcEEEEe
Q 044572 368 LVGSDVLVVDPPRK---GLDS-------SLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 368 ~~~~D~vi~DPPR~---Gl~~-------~v~~~l~~~~~~~~ivyvs 404 (457)
.+.+|+||.|||+. |... .+.+.+.+.- .++.+++.
T Consensus 104 ~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l-~~~~v~l~ 149 (179)
T PF01170_consen 104 DGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVL-KPRAVFLT 149 (179)
T ss_dssp TSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHS-TTCEEEEE
T ss_pred cCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHC-CCCEEEEE
Confidence 35799999999953 3322 2344555533 33777775
No 62
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.15 E-value=1.2e-09 Score=93.31 Aligned_cols=103 Identities=19% Similarity=0.115 Sum_probs=77.3
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD 377 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D 377 (457)
.+.+|||+|||+|.++..+++..+..+|+++|.++.+++.|++|++.+ ...+++++.+|+..........||+|+++
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~D~v~~~ 95 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRF---GVSNIVIVEGDAPEALEDSLPEPDRVFIG 95 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHh---CCCceEEEeccccccChhhcCCCCEEEEC
Confidence 578999999999999999998654468999999999999999998873 23578999999875433334689999998
Q ss_pred CCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 378 PPRKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 378 PPR~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
-+.... .++++.+.+.-.+++.++++
T Consensus 96 ~~~~~~-~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 96 GSGGLL-QEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CcchhH-HHHHHHHHHHcCCCCEEEEE
Confidence 653333 24555555544466666654
No 63
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.15 E-value=1.2e-09 Score=100.45 Aligned_cols=75 Identities=17% Similarity=0.179 Sum_probs=63.6
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD 377 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D 377 (457)
++.+|||+|||+|.+++.++.... +|+++|+++++++.|++|++.+ + .+++++.+|+.+.. ...||+|+.|
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~--~--~~~~~~~~d~~~~~---~~~fD~Vi~n 89 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLN--N--VGLDVVMTDLFKGV---RGKFDVILFN 89 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc--C--CceEEEEccccccc---CCcccEEEEC
Confidence 467899999999999999997543 8999999999999999999873 2 26899999987643 2479999999
Q ss_pred CCCC
Q 044572 378 PPRK 381 (457)
Q Consensus 378 PPR~ 381 (457)
||..
T Consensus 90 ~p~~ 93 (179)
T TIGR00537 90 PPYL 93 (179)
T ss_pred CCCC
Confidence 9963
No 64
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.14 E-value=9.5e-10 Score=102.73 Aligned_cols=103 Identities=13% Similarity=0.085 Sum_probs=74.2
Q ss_pred CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV 376 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~ 376 (457)
.++.+|||+|||+|.+++.+|+..+..+|++||+|+++++.|++|++.+ ...+++++.+|+.+.+......+|.+++
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~---~~~~v~~~~~d~~~~~~~~~~~~d~v~~ 115 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRF---GVKNVEVIEGSAPECLAQLAPAPDRVCI 115 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh---CCCCeEEEECchHHHHhhCCCCCCEEEE
Confidence 3688999999999999999987544569999999999999999999874 2357999999987643333345788888
Q ss_pred CCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 377 DPPRKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 377 DPPR~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
|... .+ .++++.+.+.-.+++.+++.
T Consensus 116 ~~~~-~~-~~~l~~~~~~LkpgG~li~~ 141 (196)
T PRK07402 116 EGGR-PI-KEILQAVWQYLKPGGRLVAT 141 (196)
T ss_pred ECCc-CH-HHHHHHHHHhcCCCeEEEEE
Confidence 7532 22 34555554433345444443
No 65
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.14 E-value=5.6e-10 Score=116.63 Aligned_cols=82 Identities=17% Similarity=0.161 Sum_probs=67.1
Q ss_pred CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc-cCCccEEE
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW-LVGSDVLV 375 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~-~~~~D~vi 375 (457)
.+|++|||+|||+|..++.++...+..+|+|+|+++.+++.+++|++.++ . +++++++|+.+..... ...||.|+
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g---~-~~~~~~~D~~~~~~~~~~~~fD~Vl 318 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLG---L-KATVIVGDARDPAQWWDGQPFDRIL 318 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcC---C-CeEEEEcCcccchhhcccCCCCEEE
Confidence 46899999999999999999986533599999999999999999998843 2 3689999997642211 24699999
Q ss_pred ECCCCCC
Q 044572 376 VDPPRKG 382 (457)
Q Consensus 376 ~DPPR~G 382 (457)
+|||..|
T Consensus 319 ~D~Pcs~ 325 (427)
T PRK10901 319 LDAPCSA 325 (427)
T ss_pred ECCCCCc
Confidence 9999765
No 66
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.12 E-value=1.3e-09 Score=102.65 Aligned_cols=111 Identities=17% Similarity=0.162 Sum_probs=79.2
Q ss_pred HHHHHHHHhhC--CCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCc
Q 044572 286 DILLRKLQKYV--PYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSI 362 (457)
Q Consensus 286 ~~l~~~i~~~~--~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~ 362 (457)
..++..+.+.+ .++++|||+|||+|.++..++...+ ..+|+++|+++++++.|++|++.+ +..++++++.+|+.+
T Consensus 58 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~--~~~~~v~~~~~d~~~ 135 (205)
T PRK13944 58 PHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERL--GYWGVVEVYHGDGKR 135 (205)
T ss_pred HHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc--CCCCcEEEEECCccc
Confidence 34445555544 3678999999999999999987542 358999999999999999999874 233469999999976
Q ss_pred CcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEE
Q 044572 363 EPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKS 403 (457)
Q Consensus 363 ~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyv 403 (457)
.+.. ...||+|+++-.-..+.+++ +..++ +++.+.+
T Consensus 136 ~~~~-~~~fD~Ii~~~~~~~~~~~l---~~~L~-~gG~lvi 171 (205)
T PRK13944 136 GLEK-HAPFDAIIVTAAASTIPSAL---VRQLK-DGGVLVI 171 (205)
T ss_pred CCcc-CCCccEEEEccCcchhhHHH---HHhcC-cCcEEEE
Confidence 5432 35799999997644443332 23455 4444444
No 67
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.11 E-value=6.4e-10 Score=103.84 Aligned_cols=121 Identities=9% Similarity=0.000 Sum_probs=89.0
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc--cCCccEEE
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW--LVGSDVLV 375 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~--~~~~D~vi 375 (457)
...++||+|||+|.+++.+|.......|+|||+++++++.|++|++.. ...|++++++|+.+..... ...+|.|+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~---~l~ni~~i~~d~~~~~~~~~~~~~~d~v~ 92 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKL---GLKNLHVLCGDANELLDKFFPDGSLSKVF 92 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHh---CCCCEEEEccCHHHHHHhhCCCCceeEEE
Confidence 457899999999999999998755568999999999999999998873 3468999999997654322 23699999
Q ss_pred ECCCC----------CCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHh
Q 044572 376 VDPPR----------KGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEA 426 (457)
Q Consensus 376 ~DPPR----------~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~ 426 (457)
++.|- ..+...+++.+.+.-.+++.++++ .........+.+.+...
T Consensus 93 ~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~-----td~~~~~~~~~~~~~~~ 148 (194)
T TIGR00091 93 LNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK-----TDNEPLFEDMLKVLSEN 148 (194)
T ss_pred EECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE-----eCCHHHHHHHHHHHHhC
Confidence 98651 122346777776655578888886 55555555555555443
No 68
>PHA03412 putative methyltransferase; Provisional
Probab=99.11 E-value=8.2e-10 Score=104.84 Aligned_cols=74 Identities=28% Similarity=0.407 Sum_probs=60.7
Q ss_pred CCCeEEEEcccccHHHHHHHhhC---CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEE
Q 044572 298 YGASVTDLYAGAGVIGLSLAAAR---KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVL 374 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~---~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~v 374 (457)
.+.+|||+|||+|.+++.++++. +..+|+|||+++.|++.|++|.. ++.++++|+.... ...+||+|
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~--------~~~~~~~D~~~~~--~~~~FDlI 118 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP--------EATWINADALTTE--FDTLFDMA 118 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc--------CCEEEEcchhccc--ccCCccEE
Confidence 46899999999999999998742 23589999999999999998753 3689999987543 23579999
Q ss_pred EECCCCC
Q 044572 375 VVDPPRK 381 (457)
Q Consensus 375 i~DPPR~ 381 (457)
|.|||+.
T Consensus 119 IsNPPY~ 125 (241)
T PHA03412 119 ISNPPFG 125 (241)
T ss_pred EECCCCC
Confidence 9999964
No 69
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.11 E-value=9.2e-10 Score=111.15 Aligned_cols=102 Identities=16% Similarity=0.149 Sum_probs=76.8
Q ss_pred CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV 376 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~ 376 (457)
.++++|||+|||+|++.+.++.. ..+|+|+|+++.|++.|++|++.. +..+++++++|+.+.... .+.||+|++
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~---g~~~i~~~~~D~~~l~~~-~~~~D~Iv~ 254 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHY---GIEDFFVKRGDATKLPLS-SESVDAIAT 254 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHh---CCCCCeEEecchhcCCcc-cCCCCEEEE
Confidence 47889999999999999998875 358999999999999999999874 234588999999875322 357999999
Q ss_pred CCCCC---Cc--------cHHHHHHHHh-cCCCCcEEEEe
Q 044572 377 DPPRK---GL--------DSSLVHALQS-IGSAERKAKSL 404 (457)
Q Consensus 377 DPPR~---Gl--------~~~v~~~l~~-~~~~~~ivyvs 404 (457)
|||+. +. ..++++.+.+ +++.++++++.
T Consensus 255 dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 255 DPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred CCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 99963 11 1234444443 45566677775
No 70
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.10 E-value=1.1e-09 Score=100.01 Aligned_cols=98 Identities=14% Similarity=0.135 Sum_probs=73.9
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD 377 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D 377 (457)
++.+|||+|||+|.++..++.+ +.+|++||+++.+++.+++|+.. ..+++++++|+.+.... ...+|.|+.|
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~-----~~~v~ii~~D~~~~~~~-~~~~d~vi~n 84 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA-----ADNLTVIHGDALKFDLP-KLQPYKVVGN 84 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc-----CCCEEEEECchhcCCcc-ccCCCEEEEC
Confidence 5789999999999999999986 46999999999999999998753 25789999999876432 1358999999
Q ss_pred CCCCCccHHHHHHHHhcCC--CCcEEEEe
Q 044572 378 PPRKGLDSSLVHALQSIGS--AERKAKSL 404 (457)
Q Consensus 378 PPR~Gl~~~v~~~l~~~~~--~~~ivyvs 404 (457)
||+.-. ..++..+..... .+.++.+.
T Consensus 85 ~Py~~~-~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 85 LPYNIS-TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred CCcccH-HHHHHHHHhcCCCcceEEEEEE
Confidence 998643 345554444321 34444443
No 71
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.10 E-value=1e-09 Score=114.68 Aligned_cols=111 Identities=13% Similarity=0.070 Sum_probs=81.4
Q ss_pred CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccc-ccCCccEEE
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS-WLVGSDVLV 375 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~-~~~~~D~vi 375 (457)
.+|++|||+|||+|..++.+|...+..+|+|+|+++++++.+++|++.++. ..++.++.+|....... ....||.|+
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~--~~~v~~~~~d~~~~~~~~~~~~fD~Vl 314 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL--TIKAETKDGDGRGPSQWAENEQFDRIL 314 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEeccccccccccccccccCEEE
Confidence 368999999999999999999865446999999999999999999998532 22455577776543210 125699999
Q ss_pred ECCCCCCcc------------------------HHHHHHH-HhcCCCCcEEEEeccCCCCCchh
Q 044572 376 VDPPRKGLD------------------------SSLVHAL-QSIGSAERKAKSLSESSSSMVKE 414 (457)
Q Consensus 376 ~DPPR~Gl~------------------------~~v~~~l-~~~~~~~~ivyvs~~~~~c~~~~ 414 (457)
+|||.+|.. .++++.. ..+++.+.++|++ |+-..
T Consensus 315 lDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst-----cs~~~ 373 (426)
T TIGR00563 315 LDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT-----CSVLP 373 (426)
T ss_pred EcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe-----CCCCh
Confidence 999977642 1233333 3356788899987 77543
No 72
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.07 E-value=1.2e-09 Score=108.19 Aligned_cols=100 Identities=16% Similarity=0.180 Sum_probs=78.8
Q ss_pred HHHHHHHhhC--CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc
Q 044572 287 ILLRKLQKYV--PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP 364 (457)
Q Consensus 287 ~l~~~i~~~~--~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~ 364 (457)
.+++.+.+.+ .++++|||+|||+|.++..++.. +.+|+|||+|+.+++.+++|++.. +...+++++++|+.+..
T Consensus 23 ~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~--~~~~~v~ii~~Dal~~~ 98 (294)
T PTZ00338 23 LVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNS--PLASKLEVIEGDALKTE 98 (294)
T ss_pred HHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhc--CCCCcEEEEECCHhhhc
Confidence 3444444433 36889999999999999999975 458999999999999999998753 22468999999997643
Q ss_pred ccccCCccEEEECCCCCCccHHHHHHHHh
Q 044572 365 LSWLVGSDVLVVDPPRKGLDSSLVHALQS 393 (457)
Q Consensus 365 ~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~ 393 (457)
...+|+||.|+|+...++.+.+.+..
T Consensus 99 ---~~~~d~VvaNlPY~Istpil~~ll~~ 124 (294)
T PTZ00338 99 ---FPYFDVCVANVPYQISSPLVFKLLAH 124 (294)
T ss_pred ---ccccCEEEecCCcccCcHHHHHHHhc
Confidence 24689999999999888776666643
No 73
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.06 E-value=2e-09 Score=102.82 Aligned_cols=75 Identities=19% Similarity=0.206 Sum_probs=64.9
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV 376 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~ 376 (457)
+|.+|||++||||-+++.+++..+..+|+|+|+|+.|++.|++.+...+ ..+++|+.+||+..... .+.||+|.+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~---~~~i~fv~~dAe~LPf~-D~sFD~vt~ 125 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKG---VQNVEFVVGDAENLPFP-DNSFDAVTI 125 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccC---ccceEEEEechhhCCCC-CCccCEEEe
Confidence 6899999999999999999998877899999999999999999887632 24599999999987643 468998866
No 74
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.01 E-value=5.6e-09 Score=98.86 Aligned_cols=79 Identities=19% Similarity=0.113 Sum_probs=65.0
Q ss_pred CCCCeEEEEcccccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAARKC-RSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV 375 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~~~-~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi 375 (457)
.++.+|||+|||+|.++..+++..+. .+|++||+++++++.|++|++.+ +..|++++++|+...... ...||+|+
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~---g~~~v~~~~gd~~~~~~~-~~~fD~I~ 150 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKL---GYDNVEVIVGDGTLGYEE-NAPYDRIY 150 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc---CCCCeEEEECCcccCCCc-CCCcCEEE
Confidence 47899999999999999999876432 59999999999999999999874 346899999998765432 35799999
Q ss_pred ECCC
Q 044572 376 VDPP 379 (457)
Q Consensus 376 ~DPP 379 (457)
++=-
T Consensus 151 ~~~~ 154 (212)
T PRK13942 151 VTAA 154 (212)
T ss_pred ECCC
Confidence 8743
No 75
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.98 E-value=5.5e-09 Score=100.44 Aligned_cols=115 Identities=16% Similarity=0.084 Sum_probs=83.9
Q ss_pred HHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc
Q 044572 286 DILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAAR-KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP 364 (457)
Q Consensus 286 ~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~-~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~ 364 (457)
..++..+.... +.++|||+|||+|.-++.+|... +..+|+++|+++++++.|++|++.+ +..++++++.+|+.+.+
T Consensus 57 g~~L~~l~~~~-~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~--gl~~~i~~~~gda~~~L 133 (234)
T PLN02781 57 GLFLSMLVKIM-NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA--GVDHKINFIQSDALSAL 133 (234)
T ss_pred HHHHHHHHHHh-CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CCCCcEEEEEccHHHHH
Confidence 34445555543 57899999999999888887642 2469999999999999999999985 34468999999998865
Q ss_pred ccc-----cCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 365 LSW-----LVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 365 ~~~-----~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
..+ .+.||+|++|....... +.++.+..+-.+++++.+.
T Consensus 134 ~~l~~~~~~~~fD~VfiDa~k~~y~-~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 134 DQLLNNDPKPEFDFAFVDADKPNYV-HFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred HHHHhCCCCCCCCEEEECCCHHHHH-HHHHHHHHhcCCCeEEEEE
Confidence 443 24799999998754433 3445444443467776653
No 76
>PHA03411 putative methyltransferase; Provisional
Probab=98.98 E-value=2.5e-09 Score=103.73 Aligned_cols=75 Identities=24% Similarity=0.294 Sum_probs=61.9
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD 377 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D 377 (457)
.+.+|||+|||+|.+++.++.+.+..+|+|||+++.|++.|++|. .+++++++|+.+... ...||+||.|
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~--------~~v~~v~~D~~e~~~--~~kFDlIIsN 133 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL--------PEAEWITSDVFEFES--NEKFDVVISN 133 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC--------cCCEEEECchhhhcc--cCCCcEEEEc
Confidence 457899999999999999987643469999999999999998863 257899999987542 3579999999
Q ss_pred CCCCC
Q 044572 378 PPRKG 382 (457)
Q Consensus 378 PPR~G 382 (457)
||+..
T Consensus 134 PPF~~ 138 (279)
T PHA03411 134 PPFGK 138 (279)
T ss_pred CCccc
Confidence 99753
No 77
>PRK14968 putative methyltransferase; Provisional
Probab=98.97 E-value=1.3e-08 Score=93.80 Aligned_cols=89 Identities=17% Similarity=0.148 Sum_probs=67.9
Q ss_pred HHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc
Q 044572 286 DILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL 365 (457)
Q Consensus 286 ~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~ 365 (457)
..|.+.+.. .++.+|||+|||+|.+++.++.. ..+|+|+|+++++++.+++|++.++.. ..++.++.+|+.+...
T Consensus 13 ~~l~~~~~~--~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~~d~~~~~~ 87 (188)
T PRK14968 13 FLLAENAVD--KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIR-NNGVEVIRSDLFEPFR 87 (188)
T ss_pred HHHHHhhhc--cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCC-CcceEEEecccccccc
Confidence 444444332 46789999999999999999986 369999999999999999999874211 1128899999866432
Q ss_pred cccCCccEEEECCCCC
Q 044572 366 SWLVGSDVLVVDPPRK 381 (457)
Q Consensus 366 ~~~~~~D~vi~DPPR~ 381 (457)
. ..||+|+.|||..
T Consensus 88 ~--~~~d~vi~n~p~~ 101 (188)
T PRK14968 88 G--DKFDVILFNPPYL 101 (188)
T ss_pred c--cCceEEEECCCcC
Confidence 2 3799999999964
No 78
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.96 E-value=7.9e-09 Score=101.62 Aligned_cols=102 Identities=19% Similarity=0.210 Sum_probs=73.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEcc
Q 044572 280 ANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNAD 359 (457)
Q Consensus 280 ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d 359 (457)
.|....+.+++.+. +.++.+|||+|||+|.++..++... .+|+|||+++++++.+++|... .+++++++|
T Consensus 26 ~~~~i~~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~~------~~v~~i~~D 95 (272)
T PRK00274 26 IDENILDKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFAE------DNLTIIEGD 95 (272)
T ss_pred CCHHHHHHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhcc------CceEEEECh
Confidence 34445544444321 2367899999999999999999864 4999999999999999887632 579999999
Q ss_pred CCcCcccccCCccEEEECCCCCCccHHHHHHHHh
Q 044572 360 NSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQS 393 (457)
Q Consensus 360 ~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~ 393 (457)
+.+..... ..++.||.|||+.-.. .++..+..
T Consensus 96 ~~~~~~~~-~~~~~vv~NlPY~iss-~ii~~~l~ 127 (272)
T PRK00274 96 ALKVDLSE-LQPLKVVANLPYNITT-PLLFHLLE 127 (272)
T ss_pred hhcCCHHH-cCcceEEEeCCccchH-HHHHHHHh
Confidence 98753211 0158999999975544 45554544
No 79
>PRK04457 spermidine synthase; Provisional
Probab=98.94 E-value=2.4e-08 Score=97.55 Aligned_cols=123 Identities=13% Similarity=0.056 Sum_probs=88.9
Q ss_pred CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV 376 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~ 376 (457)
+...+|||+|||+|.++..++...+..+|++||+++++++.|+++.... ...++++++.+|+.+++.....+||+|++
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~--~~~~rv~v~~~Da~~~l~~~~~~yD~I~~ 142 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELP--ENGERFEVIEADGAEYIAVHRHSTDVILV 142 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCC--CCCCceEEEECCHHHHHHhCCCCCCEEEE
Confidence 3568899999999999999987665678999999999999999997642 22468999999998766544467999999
Q ss_pred CCCCC-C-----ccHHHHHHHHhcCCCCcEEEEeccCCCCCc-hhchhhHHHHHHHh
Q 044572 377 DPPRK-G-----LDSSLVHALQSIGSAERKAKSLSESSSSMV-KEEKRPWILRAKEA 426 (457)
Q Consensus 377 DPPR~-G-----l~~~v~~~l~~~~~~~~ivyvs~~~~~c~~-~~~~~~~~~~~~~~ 426 (457)
|.-.. + ...++++.+.+.-.+++++.+. ... ......++..++..
T Consensus 143 D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin-----~~~~~~~~~~~l~~l~~~ 194 (262)
T PRK04457 143 DGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN-----LWSRDKRYDRYLERLESS 194 (262)
T ss_pred eCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE-----cCCCchhHHHHHHHHHHh
Confidence 96322 2 1246777776655577777775 222 22345555555544
No 80
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.94 E-value=1.8e-08 Score=95.29 Aligned_cols=98 Identities=20% Similarity=0.143 Sum_probs=73.8
Q ss_pred CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV 376 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~ 376 (457)
.++.+|||+|||+|.++..++... .+|++||+++++++.|++|++.+ ...+++++.+|+.+.+.. .+.||+|++
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~---~~~~v~~~~~d~~~~~~~-~~~fD~I~~ 150 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQL---GLHNVSVRHGDGWKGWPA-YAPFDRILV 150 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHC---CCCceEEEECCcccCCCc-CCCcCEEEE
Confidence 367899999999999999888764 48999999999999999999874 345799999998654322 357999999
Q ss_pred CCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 377 DPPRKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 377 DPPR~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
+.+...+...+ ...++ +++.+.+.
T Consensus 151 ~~~~~~~~~~l---~~~L~-~gG~lv~~ 174 (212)
T PRK00312 151 TAAAPEIPRAL---LEQLK-EGGILVAP 174 (212)
T ss_pred ccCchhhhHHH---HHhcC-CCcEEEEE
Confidence 98765443332 23344 45555554
No 81
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.93 E-value=1.8e-08 Score=101.09 Aligned_cols=99 Identities=18% Similarity=0.151 Sum_probs=72.6
Q ss_pred CCCCeEEEEcccccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAARKC-RSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV 375 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~~~-~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi 375 (457)
.++++|||+|||+|.+++.+|+..+. .+|++||+++++++.|++|++.+ +.+|+.++++|+.+..... ..||+|+
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~---g~~nV~~i~gD~~~~~~~~-~~fD~Ii 154 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRL---GIENVIFVCGDGYYGVPEF-APYDVIF 154 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc---CCCcEEEEeCChhhccccc-CCccEEE
Confidence 46889999999999999999986542 37999999999999999999874 3468999999987654332 5699999
Q ss_pred ECCCCCCccHHHHHHHHhcCCCCcEEE
Q 044572 376 VDPPRKGLDSSLVHALQSIGSAERKAK 402 (457)
Q Consensus 376 ~DPPR~Gl~~~v~~~l~~~~~~~~ivy 402 (457)
++- |+..-....+..+++.++++.
T Consensus 155 ~~~---g~~~ip~~~~~~LkpgG~Lvv 178 (322)
T PRK13943 155 VTV---GVDEVPETWFTQLKEGGRVIV 178 (322)
T ss_pred ECC---chHHhHHHHHHhcCCCCEEEE
Confidence 974 332222233445554444443
No 82
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.93 E-value=1.2e-08 Score=101.01 Aligned_cols=126 Identities=17% Similarity=0.104 Sum_probs=85.3
Q ss_pred eEEEEECCCCCCCCCHH---HHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHh
Q 044572 267 GIDISLAPSSFGQANTR---AFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS 343 (457)
Q Consensus 267 g~~~~i~~~~FfQ~n~~---~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~ 343 (457)
.++|...+..||+.+.. ....++.. ...+ ++.+|||+|||+|.+++.+|..+ .+|+|||+|+.|++.+++|++
T Consensus 88 ~l~fy~~~~~~f~~~~~~~~~~~~~~~~-~~~~-~~~~vLDlGcG~G~~~~~la~~g--~~V~avD~s~~ai~~~~~~~~ 163 (287)
T PRK12335 88 QLSFYCKPEDYFHKKYNLTATHSEVLEA-VQTV-KPGKALDLGCGQGRNSLYLALLG--FDVTAVDINQQSLENLQEIAE 163 (287)
T ss_pred EEEEEEcchhhHhhhhccccccHHHHHH-hhcc-CCCCEEEeCCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHH
Confidence 56688888888876642 12223332 2223 35599999999999999999853 499999999999999999988
Q ss_pred hCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCCc----cHHHHHHHHhcCCCCcEEE
Q 044572 344 RLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGL----DSSLVHALQSIGSAERKAK 402 (457)
Q Consensus 344 ~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl----~~~v~~~l~~~~~~~~ivy 402 (457)
.+ + . ++++...|+.... ..+.||+|+..---.-+ -..+++.+.++..++++++
T Consensus 164 ~~--~-l-~v~~~~~D~~~~~--~~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l 220 (287)
T PRK12335 164 KE--N-L-NIRTGLYDINSAS--IQEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNL 220 (287)
T ss_pred Hc--C-C-ceEEEEechhccc--ccCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEE
Confidence 73 2 2 6888888886532 24679999875421111 1245666555444555533
No 83
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.92 E-value=9.6e-09 Score=99.96 Aligned_cols=103 Identities=14% Similarity=0.108 Sum_probs=74.5
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD 377 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D 377 (457)
.+.+|||+|||+|.+++.++... .+|+|||+|+++++.|+++++.. +...+++++++|+.+......+.||+|++.
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g--~~v~~vD~s~~~l~~a~~~~~~~--g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~ 119 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELG--HQVILCDLSAEMIQRAKQAAEAK--GVSDNMQFIHCAAQDIAQHLETPVDLILFH 119 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhc--CCccceEEEEcCHHHHhhhcCCCCCEEEeh
Confidence 56799999999999999999863 59999999999999999998763 334689999999876532223579999864
Q ss_pred CCCCCc--cHHHHHHHHhcCCCCcEEEEe
Q 044572 378 PPRKGL--DSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 378 PPR~Gl--~~~v~~~l~~~~~~~~ivyvs 404 (457)
-.-.-+ ...+++.+.++-.+++++.+.
T Consensus 120 ~vl~~~~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 120 AVLEWVADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred hHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence 331100 124556665544466666553
No 84
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.90 E-value=2.5e-08 Score=96.62 Aligned_cols=105 Identities=11% Similarity=0.084 Sum_probs=75.4
Q ss_pred hCCCCCeEEEEcccccHHHHHHHhh--CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCcc
Q 044572 295 YVPYGASVTDLYAGAGVIGLSLAAA--RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSD 372 (457)
Q Consensus 295 ~~~~~~~vLDl~cG~G~~sl~lA~~--~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D 372 (457)
.+.++.+|||+|||+|.+++.+++. ....+|+|||+|+.|++.|++|++.. +...+++++++|+.+... ..+|
T Consensus 53 ~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~--~~~~~v~~~~~d~~~~~~---~~~D 127 (247)
T PRK15451 53 FVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY--KAPTPVDVIEGDIRDIAI---ENAS 127 (247)
T ss_pred hCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc--CCCCCeEEEeCChhhCCC---CCCC
Confidence 3457889999999999999988863 22358999999999999999998763 234579999999876532 3588
Q ss_pred EEEECCCCCCcc----HHHHHHHHhcCCCCcEEEEe
Q 044572 373 VLVVDPPRKGLD----SSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 373 ~vi~DPPR~Gl~----~~v~~~l~~~~~~~~ivyvs 404 (457)
+|++.-.-.-++ ..+++.+.+.-.+++.++++
T Consensus 128 ~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 128 MVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred EEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 888754321111 24566665554567776664
No 85
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.89 E-value=5.3e-09 Score=105.30 Aligned_cols=96 Identities=16% Similarity=0.147 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCC---------------------------------CC---
Q 044572 282 TRAFDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARK---------------------------------CR--- 323 (457)
Q Consensus 282 ~~~~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~---------------------------------~~--- 323 (457)
....+.|...++.+.. +++.++|-.||+|+|.+.+|..+. +.
T Consensus 173 ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~ 252 (381)
T COG0116 173 APLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGK 252 (381)
T ss_pred CCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcC
Confidence 3445566666655443 567899999999999999998642 00
Q ss_pred ---EEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCC
Q 044572 324 ---SVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPR 380 (457)
Q Consensus 324 ---~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR 380 (457)
.++|+|+++.+++.|+.|++.. +..+-|+|.++|+.++.... ..+|+||.|||+
T Consensus 253 ~~~~~~G~Did~r~i~~Ak~NA~~A--Gv~d~I~f~~~d~~~l~~~~-~~~gvvI~NPPY 309 (381)
T COG0116 253 ELPIIYGSDIDPRHIEGAKANARAA--GVGDLIEFKQADATDLKEPL-EEYGVVISNPPY 309 (381)
T ss_pred ccceEEEecCCHHHHHHHHHHHHhc--CCCceEEEEEcchhhCCCCC-CcCCEEEeCCCc
Confidence 3779999999999999999985 45678999999998765443 679999999995
No 86
>PLN02476 O-methyltransferase
Probab=98.89 E-value=1.7e-08 Score=98.80 Aligned_cols=120 Identities=13% Similarity=0.028 Sum_probs=87.8
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044572 279 QANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHN 357 (457)
Q Consensus 279 Q~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~ 357 (457)
+....+. .++..+.... ..++|||+|+|+|..++.+|...+ ..+|+++|.++++++.|++|++.+ +..++|+++.
T Consensus 101 ~v~~~~g-~lL~~L~~~~-~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~a--Gl~~~I~li~ 176 (278)
T PLN02476 101 QVSPDQA-QLLAMLVQIL-GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELA--GVSHKVNVKH 176 (278)
T ss_pred ccCHHHH-HHHHHHHHhc-CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CCCCcEEEEE
Confidence 3334443 4445555544 578999999999999999997422 348999999999999999999985 3446899999
Q ss_pred ccCCcCcccc-----cCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEE
Q 044572 358 ADNSIEPLSW-----LVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKS 403 (457)
Q Consensus 358 ~d~~~~~~~~-----~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyv 403 (457)
||+.+.+..+ .+.||+||+|.+...... ..+.+..+-.+++++.+
T Consensus 177 GdA~e~L~~l~~~~~~~~FD~VFIDa~K~~Y~~-y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 177 GLAAESLKSMIQNGEGSSYDFAFVDADKRMYQD-YFELLLQLVRVGGVIVM 226 (278)
T ss_pred cCHHHHHHHHHhcccCCCCCEEEECCCHHHHHH-HHHHHHHhcCCCcEEEE
Confidence 9998876543 247999999999765544 44444444346777665
No 87
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.89 E-value=2.2e-08 Score=100.11 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=76.4
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCC--CCCCcEEEEEccCCcCcccccCCccEEE
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPK--SVDGNISWHNADNSIEPLSWLVGSDVLV 375 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~--~~~~nv~~~~~d~~~~~~~~~~~~D~vi 375 (457)
++.+|||+|||+|.+++.+++.+ .+|+|+|+|+.|++.|++|++.... +...+++|..+|+.+. .+.||+|+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g--~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----~~~fD~Vv 217 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEG--AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----SGKYDTVT 217 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----CCCcCEEE
Confidence 47899999999999999999753 4899999999999999999875311 1134688999997543 35789775
Q ss_pred -----ECCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHH
Q 044572 376 -----VDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWI 420 (457)
Q Consensus 376 -----~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~ 420 (457)
...|+.... .+++.+..+. ++.++++ |.+......+.
T Consensus 218 ~~~vL~H~p~~~~~-~ll~~l~~l~--~g~liIs-----~~p~~~~~~~l 259 (315)
T PLN02585 218 CLDVLIHYPQDKAD-GMIAHLASLA--EKRLIIS-----FAPKTLYYDIL 259 (315)
T ss_pred EcCEEEecCHHHHH-HHHHHHHhhc--CCEEEEE-----eCCcchHHHHH
Confidence 345554332 4566666654 3455777 66665544443
No 88
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.89 E-value=7.1e-08 Score=92.16 Aligned_cols=103 Identities=13% Similarity=0.075 Sum_probs=73.2
Q ss_pred CCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV 375 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi 375 (457)
.++.+|||+|||+|.++..++...+ ..+|+|+|+++.+++.|++|++.. ..++++++++|+.+.... .+.||+|+
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~~~v~~~~~d~~~~~~~-~~~fD~V~ 119 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA---GLHNVELVHGNAMELPFD-DNSFDYVT 119 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc---CCCceEEEEechhcCCCC-CCCccEEE
Confidence 3688999999999999999997533 358999999999999999998763 236899999999775321 35799998
Q ss_pred ECCCCCCc--cHHHHHHHHhcCCCCcEEEE
Q 044572 376 VDPPRKGL--DSSLVHALQSIGSAERKAKS 403 (457)
Q Consensus 376 ~DPPR~Gl--~~~v~~~l~~~~~~~~ivyv 403 (457)
++-.-.-+ ...+++.+.+...+++.+.+
T Consensus 120 ~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 120 IGFGLRNVPDYMQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred EecccccCCCHHHHHHHHHHHcCcCeEEEE
Confidence 86442111 12345544443335554444
No 89
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.89 E-value=2e-08 Score=98.04 Aligned_cols=95 Identities=17% Similarity=0.184 Sum_probs=73.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEcc
Q 044572 280 ANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNAD 359 (457)
Q Consensus 280 ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d 359 (457)
.+....+.+++.+. +.++++|||+|||+|.+++.+++. +.+|+|||+++.+++.+++++.. ..|++++++|
T Consensus 13 ~d~~~~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~-----~~~v~ii~~D 83 (258)
T PRK14896 13 IDDRVVDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA-----AGNVEIIEGD 83 (258)
T ss_pred CCHHHHHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc-----CCCEEEEEec
Confidence 44555555554321 236889999999999999999986 45999999999999999988753 2589999999
Q ss_pred CCcCcccccCCccEEEECCCCCCccHH
Q 044572 360 NSIEPLSWLVGSDVLVVDPPRKGLDSS 386 (457)
Q Consensus 360 ~~~~~~~~~~~~D~vi~DPPR~Gl~~~ 386 (457)
+.+.. ...+|.||.|||+.-.++.
T Consensus 84 ~~~~~---~~~~d~Vv~NlPy~i~s~~ 107 (258)
T PRK14896 84 ALKVD---LPEFNKVVSNLPYQISSPI 107 (258)
T ss_pred cccCC---chhceEEEEcCCcccCcHH
Confidence 97743 2358999999998654443
No 90
>PLN02244 tocopherol O-methyltransferase
Probab=98.89 E-value=4.2e-08 Score=99.53 Aligned_cols=118 Identities=13% Similarity=0.100 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHhhC-------CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEE
Q 044572 283 RAFDILLRKLQKYV-------PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISW 355 (457)
Q Consensus 283 ~~~~~l~~~i~~~~-------~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~ 355 (457)
.....+++.+.+++ .++.+|||+|||+|.+++.+++..+ .+|+|||+|+.+++.|+++++.. +..++++|
T Consensus 96 ~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g-~~v~gvD~s~~~i~~a~~~~~~~--g~~~~v~~ 172 (340)
T PLN02244 96 QAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYG-ANVKGITLSPVQAARANALAAAQ--GLSDKVSF 172 (340)
T ss_pred HHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHhc--CCCCceEE
Confidence 33344555555543 3578999999999999999998643 48999999999999999998763 33467999
Q ss_pred EEccCCcCcccccCCccEEEECCCC--CCccHHHHHHHHhcCCCCcEEEEe
Q 044572 356 HNADNSIEPLSWLVGSDVLVVDPPR--KGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 356 ~~~d~~~~~~~~~~~~D~vi~DPPR--~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
+.+|+.+.... .+.||+|+..=-- ..-...+++.+.+...+++.+++.
T Consensus 173 ~~~D~~~~~~~-~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~ 222 (340)
T PLN02244 173 QVADALNQPFE-DGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIV 222 (340)
T ss_pred EEcCcccCCCC-CCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEE
Confidence 99999775322 3579999873211 001124555555443455555553
No 91
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.88 E-value=2.8e-08 Score=93.04 Aligned_cols=96 Identities=19% Similarity=0.061 Sum_probs=69.5
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD 377 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D 377 (457)
++.+|||+|||+|.+++.+|+.+ .+|+|+|+|+.|++.|+++++.. ...+++++.+|+.+.. +...||+|+..
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g--~~V~gvD~S~~~i~~a~~~~~~~---~~~~v~~~~~d~~~~~--~~~~fD~I~~~ 102 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANG--FDVTAWDKNPMSIANLERIKAAE---NLDNLHTAVVDLNNLT--FDGEYDFILST 102 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHHc---CCCcceEEecChhhCC--cCCCcCEEEEe
Confidence 46899999999999999999853 49999999999999999998763 3357899999987642 23569999865
Q ss_pred CCCCCcc----HHHHHHHHhcCCCCcE
Q 044572 378 PPRKGLD----SSLVHALQSIGSAERK 400 (457)
Q Consensus 378 PPR~Gl~----~~v~~~l~~~~~~~~i 400 (457)
-.-.-++ ..+++.+.++-.+++.
T Consensus 103 ~~~~~~~~~~~~~~l~~i~~~LkpgG~ 129 (197)
T PRK11207 103 VVLMFLEAKTIPGLIANMQRCTKPGGY 129 (197)
T ss_pred cchhhCCHHHHHHHHHHHHHHcCCCcE
Confidence 3321111 2345555544345554
No 92
>PRK04266 fibrillarin; Provisional
Probab=98.88 E-value=3.8e-08 Score=94.06 Aligned_cols=101 Identities=15% Similarity=0.014 Sum_probs=71.3
Q ss_pred CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc--ccccCCccEE
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LSWLVGSDVL 374 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~--~~~~~~~D~v 374 (457)
.++.+|||+|||+|.+++.+|...+..+|+|+|++++|++.+.++++.. .|+.++.+|+.... ......+|+|
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-----~nv~~i~~D~~~~~~~~~l~~~~D~i 145 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-----KNIIPILADARKPERYAHVVEKVDVI 145 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-----CCcEEEECCCCCcchhhhccccCCEE
Confidence 4789999999999999999998754458999999999999988887651 57899999986521 1123469999
Q ss_pred EECCCCCCccHHHHHHHH-hcCCCCcEEEE
Q 044572 375 VVDPPRKGLDSSLVHALQ-SIGSAERKAKS 403 (457)
Q Consensus 375 i~DPPR~Gl~~~v~~~l~-~~~~~~~ivyv 403 (457)
+.|-+-......+++.+. .++ +++.+.+
T Consensus 146 ~~d~~~p~~~~~~L~~~~r~LK-pGG~lvI 174 (226)
T PRK04266 146 YQDVAQPNQAEIAIDNAEFFLK-DGGYLLL 174 (226)
T ss_pred EECCCChhHHHHHHHHHHHhcC-CCcEEEE
Confidence 987552111112344444 455 5555444
No 93
>PRK00811 spermidine synthase; Provisional
Probab=98.87 E-value=3e-08 Score=98.05 Aligned_cols=128 Identities=16% Similarity=0.090 Sum_probs=87.4
Q ss_pred CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCC--CCCcEEEEEccCCcCcccccCCccEE
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKS--VDGNISWHNADNSIEPLSWLVGSDVL 374 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~--~~~nv~~~~~d~~~~~~~~~~~~D~v 374 (457)
+..++|||+|||.|.++..+++..+..+|++||+++++++.|+++......+ ...+++++.+|+.+++....++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 3568999999999999999987656779999999999999999987643211 24689999999987665434679999
Q ss_pred EECC--CCCCc-----cHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHh
Q 044572 375 VVDP--PRKGL-----DSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEA 426 (457)
Q Consensus 375 i~DP--PR~Gl-----~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~ 426 (457)
|+|. |. +. ..++.+.+.+.-.+++++.+.+.+.. ........+...+++.
T Consensus 155 i~D~~dp~-~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~-~~~~~~~~i~~tl~~~ 211 (283)
T PRK00811 155 IVDSTDPV-GPAEGLFTKEFYENCKRALKEDGIFVAQSGSPF-YQADEIKDMHRKLKEV 211 (283)
T ss_pred EECCCCCC-CchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcc-cCHHHHHHHHHHHHHH
Confidence 9995 33 22 23455555555457777666422211 1122344444454444
No 94
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.87 E-value=3.1e-08 Score=96.78 Aligned_cols=79 Identities=22% Similarity=0.245 Sum_probs=60.9
Q ss_pred CCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV 375 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi 375 (457)
.++.+|||+|||+|.++..++...+ ..+|+|||+|++|++.|++++.........+++++++|+.+.... .+.||+|+
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~-~~sfD~V~ 150 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFD-DCYFDAIT 150 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCC-CCCEeEEE
Confidence 4688999999999999999987533 258999999999999998775421112345899999999875422 35799987
Q ss_pred E
Q 044572 376 V 376 (457)
Q Consensus 376 ~ 376 (457)
+
T Consensus 151 ~ 151 (261)
T PLN02233 151 M 151 (261)
T ss_pred E
Confidence 6
No 95
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.86 E-value=6.7e-09 Score=98.00 Aligned_cols=94 Identities=19% Similarity=0.126 Sum_probs=75.7
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE-
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV- 376 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~- 376 (457)
.|.+|||+|||-|.++..+|+.+ .+|+|+|+++++|+.|+..+...+ -++.|.+.++++.... .++||+|+.
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~g----v~i~y~~~~~edl~~~-~~~FDvV~cm 131 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESG----VNIDYRQATVEDLASA-GGQFDVVTCM 131 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhcc----ccccchhhhHHHHHhc-CCCccEEEEh
Confidence 58999999999999999999864 599999999999999999988732 2467888888775432 268999975
Q ss_pred -------CCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 377 -------DPPRKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 377 -------DPPR~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
|| ..++..+.++-+|++++++|
T Consensus 132 EVlEHv~dp------~~~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 132 EVLEHVPDP------ESFLRACAKLVKPGGILFLS 160 (243)
T ss_pred hHHHccCCH------HHHHHHHHHHcCCCcEEEEe
Confidence 44 24677777766788999998
No 96
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.86 E-value=1e-08 Score=102.38 Aligned_cols=83 Identities=18% Similarity=0.143 Sum_probs=62.3
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEE-ccCCcCccc---ccCCccE
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHN-ADNSIEPLS---WLVGSDV 373 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~-~d~~~~~~~---~~~~~D~ 373 (457)
.+.++||+|||+|.+...++.+....+++|+|+++.|++.|++|++.|. +..++++++. .|....... ..+.||+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np-~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANP-GLNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcc-CCcCcEEEEEccchhhhhhcccccCCceEE
Confidence 3578999999999998888765444589999999999999999999841 2446788754 443332221 1347999
Q ss_pred EEECCCCC
Q 044572 374 LVVDPPRK 381 (457)
Q Consensus 374 vi~DPPR~ 381 (457)
|+.|||+.
T Consensus 193 ivcNPPf~ 200 (321)
T PRK11727 193 TLCNPPFH 200 (321)
T ss_pred EEeCCCCc
Confidence 99999974
No 97
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.83 E-value=1.3e-08 Score=97.81 Aligned_cols=101 Identities=21% Similarity=0.154 Sum_probs=65.1
Q ss_pred CCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV 375 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi 375 (457)
.+|.+|||++||||.++..+++..+ ..+|+|+|+|+.|++.|++.++.. ...+|+|+++|+++.... .+.||+|+
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~---~~~~i~~v~~da~~lp~~-d~sfD~v~ 121 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKRE---GLQNIEFVQGDAEDLPFP-DNSFDAVT 121 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHT---T--SEEEEE-BTTB--S--TT-EEEEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhh---CCCCeeEEEcCHHHhcCC-CCceeEEE
Confidence 4689999999999999999997643 358999999999999999998873 235899999999886533 36799987
Q ss_pred ECCCCCCc------cHHHHHHHHhcCCCCcEEEEe
Q 044572 376 VDPPRKGL------DSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 376 ~DPPR~Gl------~~~v~~~l~~~~~~~~ivyvs 404 (457)
+ ..|+ ...+.+..+-+++.++++.+.
T Consensus 122 ~---~fglrn~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 122 C---SFGLRNFPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp E---ES-GGG-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred H---HhhHHhhCCHHHHHHHHHHHcCCCeEEEEee
Confidence 6 1222 122334444455555566655
No 98
>PRK10742 putative methyltransferase; Provisional
Probab=98.83 E-value=2.9e-08 Score=94.89 Aligned_cols=83 Identities=20% Similarity=0.201 Sum_probs=68.2
Q ss_pred CCCC--eEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCC----C--CCCcEEEEEccCCcCccccc
Q 044572 297 PYGA--SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPK----S--VDGNISWHNADNSIEPLSWL 368 (457)
Q Consensus 297 ~~~~--~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~----~--~~~nv~~~~~d~~~~~~~~~ 368 (457)
++|. +|||+++|+|..|+.+|.+ |++ |++||.++.+....+.|++.... + ...+++.+++|+.+++....
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~-G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~ 162 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASV-GCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT 162 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHc-CCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCC
Confidence 3566 8999999999999999975 554 99999999999999999887310 1 12579999999998876655
Q ss_pred CCccEEEECCCCC
Q 044572 369 VGSDVLVVDPPRK 381 (457)
Q Consensus 369 ~~~D~vi~DPPR~ 381 (457)
..||+|++|||+.
T Consensus 163 ~~fDVVYlDPMfp 175 (250)
T PRK10742 163 PRPQVVYLDPMFP 175 (250)
T ss_pred CCCcEEEECCCCC
Confidence 5799999999964
No 99
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.83 E-value=4.1e-08 Score=98.50 Aligned_cols=96 Identities=14% Similarity=0.101 Sum_probs=74.3
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE-
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV- 376 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~- 376 (457)
++.+|||+|||+|.++..+|+.+ .+|+|||.++++++.|+++++.. ....+++++++|+++... ..+.||+|++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g--~~V~GID~s~~~i~~Ar~~~~~~--~~~~~i~~~~~dae~l~~-~~~~FD~Vi~~ 205 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMG--ATVTGVDAVDKNVKIARLHADMD--PVTSTIEYLCTTAEKLAD-EGRKFDAVLSL 205 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHhc--CcccceeEEecCHHHhhh-ccCCCCEEEEh
Confidence 46799999999999999999752 48999999999999999987652 223589999999876532 2357999975
Q ss_pred -------CCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 377 -------DPPRKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 377 -------DPPR~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
|| ..+++.+.++-.+++.++++
T Consensus 206 ~vLeHv~d~------~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 206 EVIEHVANP------AEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred hHHHhcCCH------HHHHHHHHHHcCCCcEEEEE
Confidence 43 25777777665677777776
No 100
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.81 E-value=4e-08 Score=93.33 Aligned_cols=84 Identities=25% Similarity=0.307 Sum_probs=65.0
Q ss_pred HHHHHHHHHhhCC----CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccC
Q 044572 285 FDILLRKLQKYVP----YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADN 360 (457)
Q Consensus 285 ~~~l~~~i~~~~~----~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~ 360 (457)
.+.+.+.+.+++. ++.+|||+|||+|.++..++.. ..+|+|||+|+++++.|++++... +...++.|..+|+
T Consensus 38 ~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~--~~~~~i~~~~~d~ 113 (219)
T TIGR02021 38 RAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGR--DVAGNVEFEVNDL 113 (219)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhc--CCCCceEEEECCh
Confidence 3445555555443 4789999999999999999975 349999999999999999998763 2235799999998
Q ss_pred CcCcccccCCccEEEE
Q 044572 361 SIEPLSWLVGSDVLVV 376 (457)
Q Consensus 361 ~~~~~~~~~~~D~vi~ 376 (457)
.... +.||+|+.
T Consensus 114 ~~~~----~~fD~ii~ 125 (219)
T TIGR02021 114 LSLC----GEFDIVVC 125 (219)
T ss_pred hhCC----CCcCEEEE
Confidence 7643 57998864
No 101
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.79 E-value=7.6e-08 Score=89.92 Aligned_cols=98 Identities=16% Similarity=0.035 Sum_probs=69.4
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD 377 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D 377 (457)
.+.+|||+|||+|.+++.+|.++ .+|+|+|+|+.|++.++++++.. + . ++.+..+|+.... ..+.||+|+..
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g--~~V~~iD~s~~~l~~a~~~~~~~--~-~-~v~~~~~d~~~~~--~~~~fD~I~~~ 101 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAG--YDVRAWDHNPASIASVLDMKARE--N-L-PLRTDAYDINAAA--LNEDYDFIFST 101 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHHHh--C-C-CceeEeccchhcc--ccCCCCEEEEe
Confidence 46799999999999999999853 48999999999999999988763 2 2 3677778875432 23579999887
Q ss_pred CCCCCcc----HHHHHHHHhcCCCCcE-EEE
Q 044572 378 PPRKGLD----SSLVHALQSIGSAERK-AKS 403 (457)
Q Consensus 378 PPR~Gl~----~~v~~~l~~~~~~~~i-vyv 403 (457)
..-.-++ ..+++.+.++-.+++. +.+
T Consensus 102 ~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 102 VVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred cccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 6543222 2455555544345665 444
No 102
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.79 E-value=2.1e-08 Score=95.41 Aligned_cols=93 Identities=16% Similarity=0.247 Sum_probs=71.8
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCC----cEEEEEccCCcCcccccCCccEE
Q 044572 299 GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDG----NISWHNADNSIEPLSWLVGSDVL 374 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~----nv~~~~~d~~~~~~~~~~~~D~v 374 (457)
|.+|||+|||.|.++.+||+.+ +.|+|||.++++|+.|++.+.... -... +++|.+.|+++. .+.||+|
T Consensus 90 g~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP-~~~~~~~y~l~~~~~~~E~~----~~~fDaV 162 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDP-VLEGAIAYRLEYEDTDVEGL----TGKFDAV 162 (282)
T ss_pred CceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcCc-hhccccceeeehhhcchhhc----cccccee
Confidence 6889999999999999999873 599999999999999999865432 1222 467777887664 3459998
Q ss_pred EE--------CCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 375 VV--------DPPRKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 375 i~--------DPPR~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
+. ||+ ++++.+.++..|++.++++
T Consensus 163 vcsevleHV~dp~------~~l~~l~~~lkP~G~lfit 194 (282)
T KOG1270|consen 163 VCSEVLEHVKDPQ------EFLNCLSALLKPNGRLFIT 194 (282)
T ss_pred eeHHHHHHHhCHH------HHHHHHHHHhCCCCceEee
Confidence 75 564 5777777665677888887
No 103
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.79 E-value=8.7e-08 Score=91.73 Aligned_cols=126 Identities=14% Similarity=0.057 Sum_probs=90.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCC
Q 044572 273 APSSFGQANTRAFDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVD 350 (457)
Q Consensus 273 ~~~~FfQ~n~~~~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~ 350 (457)
++.+|+|.+..++...++.+...+. ++.+|||+|||+|.++..+++. + .+|+++|.++.+++.|++|+...+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~-~~v~~iD~s~~~~~~a~~~~~~~~---- 94 (233)
T PRK05134 21 DPNGEFKPLHRINPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL-G-ADVTGIDASEENIEVARLHALESG---- 94 (233)
T ss_pred ccCCCcHHHHHhhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc-C-CeEEEEcCCHHHHHHHHHHHHHcC----
Confidence 5678888887777666666666542 5789999999999999999875 3 489999999999999999987531
Q ss_pred CcEEEEEccCCcCcccccCCccEEEECCCC--CCccHHHHHHHHhcCCCCcEEEEe
Q 044572 351 GNISWHNADNSIEPLSWLVGSDVLVVDPPR--KGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 351 ~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR--~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
.+++++.+|+.+......+.||+|++.-.- .+-...+++.+.+.-.+++.++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~ 150 (233)
T PRK05134 95 LKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFS 150 (233)
T ss_pred CceEEEecCHHHhhhhcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEE
Confidence 257888888776543333679999874321 111234666666654567777775
No 104
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.1e-07 Score=88.60 Aligned_cols=107 Identities=16% Similarity=0.171 Sum_probs=79.9
Q ss_pred HHHHHhhC--CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccc
Q 044572 289 LRKLQKYV--PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS 366 (457)
Q Consensus 289 ~~~i~~~~--~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~ 366 (457)
..++.+++ .++++|||+|||||..+-.+|+..+ +|+.||+.++..+.|++|++.++ ..||.++++|...-+..
T Consensus 61 vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg---~~nV~v~~gDG~~G~~~ 135 (209)
T COG2518 61 VARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLG---YENVTVRHGDGSKGWPE 135 (209)
T ss_pred HHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcC---CCceEEEECCcccCCCC
Confidence 33444433 4799999999999999999999865 99999999999999999999853 46799999999775443
Q ss_pred ccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 367 WLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 367 ~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
...||.|++.=--.-+...+++ .+++.++++..-
T Consensus 136 -~aPyD~I~Vtaaa~~vP~~Ll~---QL~~gGrlv~Pv 169 (209)
T COG2518 136 -EAPYDRIIVTAAAPEVPEALLD---QLKPGGRLVIPV 169 (209)
T ss_pred -CCCcCEEEEeeccCCCCHHHHH---hcccCCEEEEEE
Confidence 3579999985443333344444 345556666654
No 105
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.78 E-value=7.7e-09 Score=95.60 Aligned_cols=111 Identities=13% Similarity=0.159 Sum_probs=83.3
Q ss_pred EEECCCCCCCCCHH-HHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCC
Q 044572 270 ISLAPSSFGQANTR-AFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKS 348 (457)
Q Consensus 270 ~~i~~~~FfQ~n~~-~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~ 348 (457)
..++-.++|.+.++ .++.+...+.... ..+.|+|.|||.|+-++..|.. +-.|++||+++.-+..|++|++.- +
T Consensus 66 i~md~e~wfsvTpe~ia~~iA~~v~~~~-~~~~iidaf~g~gGntiqfa~~--~~~VisIdiDPikIa~AkhNaeiY--G 140 (263)
T KOG2730|consen 66 IYMDREGWFSVTPEKIAEHIANRVVACM-NAEVIVDAFCGVGGNTIQFALQ--GPYVIAIDIDPVKIACARHNAEVY--G 140 (263)
T ss_pred eeecccceEEeccHHHHHHHHHHHHHhc-CcchhhhhhhcCCchHHHHHHh--CCeEEEEeccHHHHHHHhccceee--c
Confidence 34444555555543 4555555554433 5678999999999999999976 349999999999999999999985 4
Q ss_pred CCCcEEEEEccCCcCccccc---CCccEEEECCCCCCccH
Q 044572 349 VDGNISWHNADNSIEPLSWL---VGSDVLVVDPPRKGLDS 385 (457)
Q Consensus 349 ~~~nv~~~~~d~~~~~~~~~---~~~D~vi~DPPR~Gl~~ 385 (457)
..++|+|++||+.+....+. ..+|+|++-||..|-+.
T Consensus 141 I~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sppwggp~y 180 (263)
T KOG2730|consen 141 VPDRITFICGDFLDLASKLKADKIKYDCVFLSPPWGGPSY 180 (263)
T ss_pred CCceeEEEechHHHHHHHHhhhhheeeeeecCCCCCCcch
Confidence 56799999999987654432 24789999999877544
No 106
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.78 E-value=6.7e-08 Score=98.55 Aligned_cols=104 Identities=13% Similarity=0.025 Sum_probs=79.7
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc-cCCccEEEE
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW-LVGSDVLVV 376 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~-~~~~D~vi~ 376 (457)
.+..+||+|||+|.+++.+|.......++|||+++.+++.|.+++..+ +..|+.++++|+...+... .+.+|.|++
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~---gL~NV~~i~~DA~~ll~~~~~~s~D~I~l 198 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELL---NLKNLLIINYDARLLLELLPSNSVEKIFV 198 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc---CCCcEEEEECCHHHhhhhCCCCceeEEEE
Confidence 467999999999999999998765568999999999999999999873 4578999999997543222 257999988
Q ss_pred CCCC--------CCccHHHHHHHHhcCCCCcEEEEe
Q 044572 377 DPPR--------KGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 377 DPPR--------~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
+.|- .-....+++.+.+.-.+++.+++.
T Consensus 199 nFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 199 HFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred eCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 7652 112245666666655577777775
No 107
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.77 E-value=3.9e-08 Score=92.59 Aligned_cols=74 Identities=19% Similarity=0.029 Sum_probs=57.7
Q ss_pred HhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCcc
Q 044572 293 QKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSD 372 (457)
Q Consensus 293 ~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D 372 (457)
+..+.++.+|||+|||+|.++..++...+..+|+|||+|++|++.|+++.. ++.++++|+.+.. ..+.||
T Consensus 38 l~~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~--------~~~~~~~d~~~~~--~~~sfD 107 (204)
T TIGR03587 38 LNRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP--------NINIIQGSLFDPF--KDNFFD 107 (204)
T ss_pred HHhcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC--------CCcEEEeeccCCC--CCCCEE
Confidence 334456789999999999999999876444689999999999999987642 3567888887621 235799
Q ss_pred EEEE
Q 044572 373 VLVV 376 (457)
Q Consensus 373 ~vi~ 376 (457)
+|++
T Consensus 108 ~V~~ 111 (204)
T TIGR03587 108 LVLT 111 (204)
T ss_pred EEEE
Confidence 9886
No 108
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.77 E-value=9e-08 Score=100.51 Aligned_cols=105 Identities=17% Similarity=0.165 Sum_probs=80.9
Q ss_pred CCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV 375 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi 375 (457)
.+|++|||+|||.|+=+.++|...+ -..|+++|+++.-++.+++|+++. +..|+.+...|+..........||.|+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~---G~~nv~v~~~D~~~~~~~~~~~fD~IL 188 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRC---GVSNVALTHFDGRVFGAALPETFDAIL 188 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc---CCCeEEEEeCchhhhhhhchhhcCeEE
Confidence 4789999999999999999997642 358999999999999999999984 357889999998764333335699999
Q ss_pred ECCCCCCcc-----H-------------------HHH-HHHHhcCCCCcEEEEe
Q 044572 376 VDPPRKGLD-----S-------------------SLV-HALQSIGSAERKAKSL 404 (457)
Q Consensus 376 ~DPPR~Gl~-----~-------------------~v~-~~l~~~~~~~~ivyvs 404 (457)
+|+|-+|.. + +++ .+...+++.+.+||++
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 999966542 1 122 2333456788999997
No 109
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.76 E-value=1.5e-07 Score=91.30 Aligned_cols=96 Identities=13% Similarity=0.018 Sum_probs=69.6
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD 377 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D 377 (457)
.+.+|||+|||+|.++..++.. ..+|+++|+|+++++.|+++.. ...++++|+..... ..+.||+|+.+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~--------~~~~~~~d~~~~~~-~~~~fD~V~s~ 110 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA--------ADHYLAGDIESLPL-ATATFDLAWSN 110 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC--------CCCEEEcCcccCcC-CCCcEEEEEEC
Confidence 4678999999999999999874 3599999999999999987642 23688999876432 13579999987
Q ss_pred CCCC--CccHHHHHHHHhcCCCCcEEEEe
Q 044572 378 PPRK--GLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 378 PPR~--Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
..-. .-...++..+.+...+++.++++
T Consensus 111 ~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 111 LAVQWCGNLSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred chhhhcCCHHHHHHHHHHHcCCCeEEEEE
Confidence 6521 11224566665554577777776
No 110
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.76 E-value=3.9e-08 Score=92.73 Aligned_cols=111 Identities=17% Similarity=0.146 Sum_probs=77.9
Q ss_pred HHHHHHHhhC--CCCCeEEEEcccccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC
Q 044572 287 ILLRKLQKYV--PYGASVTDLYAGAGVIGLSLAAARKC-RSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE 363 (457)
Q Consensus 287 ~l~~~i~~~~--~~~~~vLDl~cG~G~~sl~lA~~~~~-~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~ 363 (457)
.++..+.+++ .+|++|||+|||+|.++-.+|...+. .+|++||++++.++.|++|++.+ +..|+.++++|...-
T Consensus 59 ~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~---~~~nv~~~~gdg~~g 135 (209)
T PF01135_consen 59 SMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARL---GIDNVEVVVGDGSEG 135 (209)
T ss_dssp HHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHH---TTHSEEEEES-GGGT
T ss_pred HHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHh---ccCceeEEEcchhhc
Confidence 3344444444 58999999999999999999987542 47999999999999999999874 346999999998765
Q ss_pred cccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 364 PLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 364 ~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
+.. ...||.|++......+...+++ .++..+++|..-
T Consensus 136 ~~~-~apfD~I~v~~a~~~ip~~l~~---qL~~gGrLV~pi 172 (209)
T PF01135_consen 136 WPE-EAPFDRIIVTAAVPEIPEALLE---QLKPGGRLVAPI 172 (209)
T ss_dssp TGG-G-SEEEEEESSBBSS--HHHHH---TEEEEEEEEEEE
T ss_pred ccc-CCCcCEEEEeeccchHHHHHHH---hcCCCcEEEEEE
Confidence 433 3579999998766555544444 455456666643
No 111
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.76 E-value=2.3e-07 Score=89.35 Aligned_cols=104 Identities=10% Similarity=0.003 Sum_probs=73.7
Q ss_pred CCCCCeEEEEcccccHHHHHHHhhC--CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccE
Q 044572 296 VPYGASVTDLYAGAGVIGLSLAAAR--KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDV 373 (457)
Q Consensus 296 ~~~~~~vLDl~cG~G~~sl~lA~~~--~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~ 373 (457)
+.++.+|||+|||+|.++..+++.. ...+|+|||+|++|++.|+++++.. ....+++++++|+.+... ..+|+
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~--~~~~~v~~~~~d~~~~~~---~~~d~ 125 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY--HSEIPVEILCNDIRHVEI---KNASM 125 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc--CCCCCeEEEECChhhCCC---CCCCE
Confidence 3467899999999999999998742 2358999999999999999998763 223579999999976532 35787
Q ss_pred EEECCCCCCcc----HHHHHHHHhcCCCCcEEEEe
Q 044572 374 LVVDPPRKGLD----SSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 374 vi~DPPR~Gl~----~~v~~~l~~~~~~~~ivyvs 404 (457)
|++.=.-.-++ ..+++.+.+.-.+++.++++
T Consensus 126 v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 126 VILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred EeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 76532211111 23555555544577777775
No 112
>PRK03612 spermidine synthase; Provisional
Probab=98.74 E-value=1e-07 Score=102.03 Aligned_cols=109 Identities=16% Similarity=0.045 Sum_probs=80.6
Q ss_pred CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh--CCC--CCCCcEEEEEccCCcCcccccCCcc
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR--LPK--SVDGNISWHNADNSIEPLSWLVGSD 372 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~--~~~--~~~~nv~~~~~d~~~~~~~~~~~~D 372 (457)
++.++|||+|||+|.++..+++.....+|++||+|+++++.|++|... .+. ...++++++.+|+.+++....++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 457899999999999999988753347999999999999999996321 100 1235899999999886654456899
Q ss_pred EEEECCCCCC-------ccHHHHHHHHhcCCCCcEEEEec
Q 044572 373 VLVVDPPRKG-------LDSSLVHALQSIGSAERKAKSLS 405 (457)
Q Consensus 373 ~vi~DPPR~G-------l~~~v~~~l~~~~~~~~ivyvs~ 405 (457)
+|++|+|... ...++.+.+.+.-++++++.+.+
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 9999998532 12356666666555788877753
No 113
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.73 E-value=1.3e-07 Score=76.46 Aligned_cols=100 Identities=20% Similarity=0.175 Sum_probs=74.4
Q ss_pred eEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCC
Q 044572 301 SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPR 380 (457)
Q Consensus 301 ~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR 380 (457)
+++|+|||+|.++..++. ....+++++|.++.+++.++++.+. +...+++++.+|..+........+|+|+++++.
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAA---LLADNVEVLKGDAEELPPEADESFDVIISDPPL 76 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhc---ccccceEEEEcChhhhccccCCceEEEEEccce
Confidence 489999999999999987 3467999999999999999865443 234678999999887643223679999999996
Q ss_pred CC---ccHHHHHHHHhcCCCCcEEEEe
Q 044572 381 KG---LDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 381 ~G---l~~~v~~~l~~~~~~~~ivyvs 404 (457)
.. ....+++.+.....+++.++++
T Consensus 77 ~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 77 HHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 43 3345556655544467777663
No 114
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.73 E-value=1.2e-07 Score=92.29 Aligned_cols=97 Identities=13% Similarity=0.043 Sum_probs=72.6
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD 377 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D 377 (457)
++.+|||+|||+|.++..++...+..+|+|||+|+.+++.|+++. .++.|+.+|+..... ...||+|+.+
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~--------~~~~~~~~d~~~~~~--~~~fD~v~~~ 100 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL--------PDCQFVEADIASWQP--PQALDLIFAN 100 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC--------CCCeEEECchhccCC--CCCccEEEEc
Confidence 678999999999999999998655569999999999999998763 256899999876532 2579999988
Q ss_pred CCCCCc--cHHHHHHHHhcCCCCcEEEEe
Q 044572 378 PPRKGL--DSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 378 PPR~Gl--~~~v~~~l~~~~~~~~ivyvs 404 (457)
..-.-+ ...+++.+.+.-.+++.+.++
T Consensus 101 ~~l~~~~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 101 ASLQWLPDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred cChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 763211 234566565544467776665
No 115
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.72 E-value=1.2e-07 Score=89.99 Aligned_cols=101 Identities=13% Similarity=0.010 Sum_probs=72.2
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECC
Q 044572 299 GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDP 378 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DP 378 (457)
+.+|||+|||+|.++..+++. + .+|+++|.++.+++.+++|+... ...++++..+|+.+........||+|+++-
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~-~-~~v~~iD~s~~~~~~a~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~ 120 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARL-G-ANVTGIDASEENIEVAKLHAKKD---PLLKIEYRCTSVEDLAEKGAKSFDVVTCME 120 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHHHHHc---CCCceEEEeCCHHHhhcCCCCCccEEEehh
Confidence 779999999999999999874 3 37999999999999999998763 223689999998765433235799998743
Q ss_pred C--CCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 379 P--RKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 379 P--R~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
- ...-...+++.+...-.+++.++++
T Consensus 121 ~l~~~~~~~~~l~~~~~~L~~gG~l~i~ 148 (224)
T TIGR01983 121 VLEHVPDPQAFIRACAQLLKPGGILFFS 148 (224)
T ss_pred HHHhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 2 1111224555555544466666665
No 116
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.71 E-value=1.8e-07 Score=91.84 Aligned_cols=104 Identities=13% Similarity=0.069 Sum_probs=73.9
Q ss_pred CCCCCeEEEEcccccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEE
Q 044572 296 VPYGASVTDLYAGAGVIGLSLAAARKC-RSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVL 374 (457)
Q Consensus 296 ~~~~~~vLDl~cG~G~~sl~lA~~~~~-~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~v 374 (457)
+.++++|||+|||+|..++.+++..+. .+|+|||+++.+++.|++|++.+ +.++++|+.+|+++.... .+.||+|
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~---g~~~v~~~~~d~~~l~~~-~~~fD~V 150 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA---GYTNVEFRLGEIEALPVA-DNSVDVI 150 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHc---CCCCEEEEEcchhhCCCC-CCceeEE
Confidence 357899999999999998887765443 47999999999999999998763 346899999998764321 2479999
Q ss_pred EECCCC---CCccHHHHHHHHhcCCCCcEEEEe
Q 044572 375 VVDPPR---KGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 375 i~DPPR---~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
+.+--- .+. ..+++.+.+.-.+++.++++
T Consensus 151 i~~~v~~~~~d~-~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 151 ISNCVINLSPDK-ERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred EEcCcccCCCCH-HHHHHHHHHHcCCCcEEEEE
Confidence 876321 011 23455554443466666654
No 117
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.71 E-value=1.8e-07 Score=103.62 Aligned_cols=83 Identities=16% Similarity=0.159 Sum_probs=66.2
Q ss_pred CCCCeEEEEcccccHHHHHHHhhCC------------------------------------------CCEEEEEeCCHHH
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAARK------------------------------------------CRSVKCVEINKES 334 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~~------------------------------------------~~~V~gVE~~~~a 334 (457)
.++..++|.+||+|+|.+.+|.... ..+++|+|+++.|
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 3578999999999999999986310 1269999999999
Q ss_pred HHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc-cCCccEEEECCCCC
Q 044572 335 QLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW-LVGSDVLVVDPPRK 381 (457)
Q Consensus 335 v~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~-~~~~D~vi~DPPR~ 381 (457)
++.|++|++.+ +..+.++|.++|+.+..... .+.+|+||.|||+.
T Consensus 269 v~~A~~N~~~~--g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg 314 (702)
T PRK11783 269 IQAARKNARRA--GVAELITFEVKDVADLKNPLPKGPTGLVISNPPYG 314 (702)
T ss_pred HHHHHHHHHHc--CCCcceEEEeCChhhcccccccCCCCEEEECCCCc
Confidence 99999999985 34457999999998754322 24699999999963
No 118
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.70 E-value=1.1e-07 Score=92.46 Aligned_cols=95 Identities=14% Similarity=0.039 Sum_probs=68.5
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD 377 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D 377 (457)
++.+|||+|||+|.++..++......+|+|+|+|+.+++.|+++ +++++++|+.+... .+.||+|+.+
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----------~~~~~~~d~~~~~~--~~~fD~v~~~ 96 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----------GVDARTGDVRDWKP--KPDTDVVVSN 96 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----------CCcEEEcChhhCCC--CCCceEEEEe
Confidence 67899999999999999999864345899999999999988642 36789999876532 3579999996
Q ss_pred CCCCC--ccHHHHHHHHhcCCCCcEEEEe
Q 044572 378 PPRKG--LDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 378 PPR~G--l~~~v~~~l~~~~~~~~ivyvs 404 (457)
..-.= -...+++.+.+.-.+++.+.+.
T Consensus 97 ~~l~~~~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 97 AALQWVPEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred hhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence 65211 1134555554433466666664
No 119
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=3.9e-07 Score=86.79 Aligned_cols=100 Identities=15% Similarity=0.140 Sum_probs=78.0
Q ss_pred CCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV 375 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi 375 (457)
.+|.+|||.|.|||+++..||...+ ..+|+.+|+.++.++.|++|++.. +..+++++..+|+.+.... +.+|+||
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~--~l~d~v~~~~~Dv~~~~~~--~~vDav~ 168 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF--GLGDRVTLKLGDVREGIDE--EDVDAVF 168 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh--ccccceEEEeccccccccc--cccCEEE
Confidence 4899999999999999999997544 379999999999999999999985 3445699999999876543 4899999
Q ss_pred ECCCCCCccHHHHHHHHhc-CCCCcEEEE
Q 044572 376 VDPPRKGLDSSLVHALQSI-GSAERKAKS 403 (457)
Q Consensus 376 ~DPPR~Gl~~~v~~~l~~~-~~~~~ivyv 403 (457)
+|=|.. -++++.+.+. ++.+.++..
T Consensus 169 LDmp~P---W~~le~~~~~Lkpgg~~~~y 194 (256)
T COG2519 169 LDLPDP---WNVLEHVSDALKPGGVVVVY 194 (256)
T ss_pred EcCCCh---HHHHHHHHHHhCCCcEEEEE
Confidence 999852 3566666554 334444443
No 120
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.70 E-value=3.7e-08 Score=98.00 Aligned_cols=99 Identities=18% Similarity=0.183 Sum_probs=73.2
Q ss_pred CCCCCCCC---HHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCC
Q 044572 274 PSSFGQAN---TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVD 350 (457)
Q Consensus 274 ~~~FfQ~n---~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~ 350 (457)
..-||+.- +..+..|++... +.+|+.|||-|||||+|-+.+... | .+|+|.|++..|++-|+.|++.. ..
T Consensus 172 kRPf~~p~s~~P~lAR~mVNLa~--v~~G~~vlDPFcGTGgiLiEagl~-G-~~viG~Did~~mv~gak~Nl~~y---~i 244 (347)
T COG1041 172 KRPFFRPGSMDPRLARAMVNLAR--VKRGELVLDPFCGTGGILIEAGLM-G-ARVIGSDIDERMVRGAKINLEYY---GI 244 (347)
T ss_pred cCCccCcCCcCHHHHHHHHHHhc--cccCCEeecCcCCccHHHHhhhhc-C-ceEeecchHHHHHhhhhhhhhhh---Cc
Confidence 34666652 344444444322 357999999999999999999875 3 49999999999999999999874 24
Q ss_pred CcEEEEEc-cCCcCcccccCCccEEEECCCC
Q 044572 351 GNISWHNA-DNSIEPLSWLVGSDVLVVDPPR 380 (457)
Q Consensus 351 ~nv~~~~~-d~~~~~~~~~~~~D~vi~DPPR 380 (457)
....++.+ ||...... .+.+|.|+.|||+
T Consensus 245 ~~~~~~~~~Da~~lpl~-~~~vdaIatDPPY 274 (347)
T COG1041 245 EDYPVLKVLDATNLPLR-DNSVDAIATDPPY 274 (347)
T ss_pred CceeEEEecccccCCCC-CCccceEEecCCC
Confidence 55666666 88776522 1359999999996
No 121
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.69 E-value=1.9e-07 Score=90.87 Aligned_cols=102 Identities=18% Similarity=0.153 Sum_probs=74.8
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044572 278 GQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHN 357 (457)
Q Consensus 278 fQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~ 357 (457)
|-.|....+.+++.+. ..++++|||+|||+|.++..++.+. .+|+++|+++.+++.++++... ..++++++
T Consensus 11 fl~d~~i~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~-----~~~v~v~~ 81 (253)
T TIGR00755 11 FLIDESVIQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL-----YERLEVIE 81 (253)
T ss_pred cCCCHHHHHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc-----CCcEEEEE
Confidence 3455555555544331 1367899999999999999999864 4799999999999999987643 35789999
Q ss_pred ccCCcCcccccCCcc---EEEECCCCCCccHHHHHHHH
Q 044572 358 ADNSIEPLSWLVGSD---VLVVDPPRKGLDSSLVHALQ 392 (457)
Q Consensus 358 ~d~~~~~~~~~~~~D---~vi~DPPR~Gl~~~v~~~l~ 392 (457)
+|+.+.... .+| +|+.|+|+.-. ..++..+.
T Consensus 82 ~D~~~~~~~---~~d~~~~vvsNlPy~i~-~~il~~ll 115 (253)
T TIGR00755 82 GDALKVDLP---DFPKQLKVVSNLPYNIS-SPLIFKLL 115 (253)
T ss_pred CchhcCChh---HcCCcceEEEcCChhhH-HHHHHHHh
Confidence 999775422 355 99999997644 34555554
No 122
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.69 E-value=3.2e-07 Score=90.09 Aligned_cols=107 Identities=14% Similarity=0.057 Sum_probs=77.9
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCC-CCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPK-SVDGNISWHNADNSIEPLSWLVGSDVLVV 376 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~-~~~~nv~~~~~d~~~~~~~~~~~~D~vi~ 376 (457)
..++|||+|||+|.++..+++.....+|++||+++++++.|+++...... ....+++++.+|+.+++....+.||+||+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 45699999999999998888754467899999999999999998754211 12357889999987765544468999999
Q ss_pred CCCCC-Cc-----cHHHHHHHHhcCCCCcEEEEe
Q 044572 377 DPPRK-GL-----DSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 377 DPPR~-Gl-----~~~v~~~l~~~~~~~~ivyvs 404 (457)
|++.. +. ..+..+.+.+.-.+++++.+.
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 99732 11 235556665544466666664
No 123
>PRK01581 speE spermidine synthase; Validated
Probab=98.67 E-value=3.5e-07 Score=92.18 Aligned_cols=109 Identities=16% Similarity=0.031 Sum_probs=78.8
Q ss_pred CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHH--h-hCC-CCCCCcEEEEEccCCcCcccccCCc
Q 044572 296 VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTV--S-RLP-KSVDGNISWHNADNSIEPLSWLVGS 371 (457)
Q Consensus 296 ~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na--~-~~~-~~~~~nv~~~~~d~~~~~~~~~~~~ 371 (457)
.....+||++|||+|.....+.+.....+|++||+++++++.|++.- . .+. .....+++++.+|+.+++....+.|
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 34567999999999998888887554679999999999999999621 1 100 0124689999999988765545679
Q ss_pred cEEEECCCCC-C------ccHHHHHHHHhcCCCCcEEEEe
Q 044572 372 DVLVVDPPRK-G------LDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 372 D~vi~DPPR~-G------l~~~v~~~l~~~~~~~~ivyvs 404 (457)
|+||+|.|-. + ...++.+.+.+.-.+++++.+-
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9999998632 1 1235666666655577776664
No 124
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.66 E-value=1.7e-07 Score=99.45 Aligned_cols=113 Identities=13% Similarity=0.036 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC
Q 044572 284 AFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE 363 (457)
Q Consensus 284 ~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~ 363 (457)
.++.+++.+. +.++.+|||+|||+|.+++.+|...+ .+|+|+|+|+++++.|++|+.. ...+++|+.+|+...
T Consensus 254 ~te~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvDiS~~~l~~A~~~~~~----~~~~v~~~~~d~~~~ 326 (475)
T PLN02336 254 TTKEFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENFD-VHVVGIDLSVNMISFALERAIG----RKCSVEFEVADCTKK 326 (475)
T ss_pred HHHHHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhcC-CEEEEEECCHHHHHHHHHHhhc----CCCceEEEEcCcccC
Confidence 4455555432 34678999999999999999997654 4899999999999999998753 235799999998764
Q ss_pred cccccCCccEEEECCCC--CCccHHHHHHHHhcCCCCcEEEEe
Q 044572 364 PLSWLVGSDVLVVDPPR--KGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 364 ~~~~~~~~D~vi~DPPR--~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
... .+.||+|+..--- ..-...+++.+.+.-.+++.++++
T Consensus 327 ~~~-~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 327 TYP-DNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred CCC-CCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEE
Confidence 321 2469999873210 000124556665554567777765
No 125
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.66 E-value=1.2e-07 Score=88.70 Aligned_cols=159 Identities=16% Similarity=0.121 Sum_probs=100.9
Q ss_pred EEeeeeEEEEECCCCCCCCCHHHHHHHHHHHHhh-CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH
Q 044572 262 WENVGGIDISLAPSSFGQANTRAFDILLRKLQKY-VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340 (457)
Q Consensus 262 ~~~~~g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~-~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~ 340 (457)
+.+++|++++=.... |+.. .. ..++... .+.|++|||.|.|-|.+++.+++ +|+.+|+.||.|+.-++.|+-
T Consensus 103 TiEIdGIrMhrt~~t----dP~~-Dt-~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~-rGA~~VitvEkdp~VLeLa~l 175 (287)
T COG2521 103 TIEIDGIRMHRTKGT----DPLE-DT-LAKVELVKVKRGERVLDTCTGLGYTAIEALE-RGAIHVITVEKDPNVLELAKL 175 (287)
T ss_pred eEEEccEEEecccCc----CcHH-HH-HhhhheeccccCCEeeeeccCccHHHHHHHH-cCCcEEEEEeeCCCeEEeecc
Confidence 446889888754322 2211 11 1222211 23699999999999999999997 578899999999999999987
Q ss_pred HHhhCCCCCCCcEEEEEccCCcCccccc-CCccEEEECCCCCCccHH-----HHHHH-HhcCCCCcEEEEeccCC-CCCc
Q 044572 341 TVSRLPKSVDGNISWHNADNSIEPLSWL-VGSDVLVVDPPRKGLDSS-----LVHAL-QSIGSAERKAKSLSESS-SSMV 412 (457)
Q Consensus 341 Na~~~~~~~~~nv~~~~~d~~~~~~~~~-~~~D~vi~DPPR~Gl~~~-----v~~~l-~~~~~~~~ivyvs~~~~-~c~~ 412 (457)
|==.-+. ...+++.+.||+.+....+. ..||+||-||||..+..+ +.+.+ +-+++.++++.-.++.. .--.
T Consensus 176 NPwSr~l-~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG 254 (287)
T COG2521 176 NPWSREL-FEIAIKIILGDAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRG 254 (287)
T ss_pred CCCCccc-cccccEEecccHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCccccc
Confidence 7211001 12368999999998776654 469999999999765443 33334 33555666654433322 1222
Q ss_pred hhchhhHHHHHHHhcc
Q 044572 413 KEEKRPWILRAKEASV 428 (457)
Q Consensus 413 ~~~~~~~~~~~~~~~~ 428 (457)
....+-..+.++.++-
T Consensus 255 ~d~~~gVa~RLr~vGF 270 (287)
T COG2521 255 LDLPKGVAERLRRVGF 270 (287)
T ss_pred CChhHHHHHHHHhcCc
Confidence 3344555555555543
No 126
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.66 E-value=2.9e-07 Score=92.70 Aligned_cols=101 Identities=16% Similarity=0.063 Sum_probs=68.8
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD 377 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D 377 (457)
.+.+|||+|||+|.+++.++.. ++.+|+|||.|+.++..++...+.. +...+++|+.+|+.+... .+.||+|+.-
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~-g~~~V~GiD~S~~~l~q~~a~~~~~--~~~~~i~~~~~d~e~lp~--~~~FD~V~s~ 196 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGA-GAKLVVGIDPSQLFLCQFEAVRKLL--GNDQRAHLLPLGIEQLPA--LKAFDTVFSM 196 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHHHHhc--CCCCCeEEEeCCHHHCCC--cCCcCEEEEC
Confidence 5789999999999999999975 5678999999999987665543332 113579999999877543 4679999862
Q ss_pred CC---CCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 378 PP---RKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 378 PP---R~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
== +.. ...+++.+.+.-.+++.++++
T Consensus 197 ~vl~H~~d-p~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 197 GVLYHRRS-PLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred ChhhccCC-HHHHHHHHHHhcCCCcEEEEE
Confidence 10 000 124555555543455555544
No 127
>PLN02366 spermidine synthase
Probab=98.64 E-value=6.5e-07 Score=89.35 Aligned_cols=129 Identities=16% Similarity=0.106 Sum_probs=88.3
Q ss_pred CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCC-CCCcEEEEEccCCcCcccc-cCCccEE
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKS-VDGNISWHNADNSIEPLSW-LVGSDVL 374 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~-~~~nv~~~~~d~~~~~~~~-~~~~D~v 374 (457)
+..++||++|||.|.+...+++.....+|+.||++++.++.|++........ ...+++++.+|+..++... .+.||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4578999999999999999998655679999999999999999986542111 2458999999998766543 3579999
Q ss_pred EECCCCC-C-----ccHHHHHHHHhcCCCCcEEEEeccCCCCCc-hhchhhHHHHHHHhc
Q 044572 375 VVDPPRK-G-----LDSSLVHALQSIGSAERKAKSLSESSSSMV-KEEKRPWILRAKEAS 427 (457)
Q Consensus 375 i~DPPR~-G-----l~~~v~~~l~~~~~~~~ivyvs~~~~~c~~-~~~~~~~~~~~~~~~ 427 (457)
|+|-+.. | ...++.+.+.+.-.+++++.+-+.+ .+. ....+.+...++..-
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s--~~~~~~~~~~i~~tl~~~F 227 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAES--MWLHMDLIEDLIAICRETF 227 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCC--cccchHHHHHHHHHHHHHC
Confidence 9996531 1 2345677766655577776553221 222 223444555555443
No 128
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.64 E-value=1e-07 Score=79.04 Aligned_cols=70 Identities=23% Similarity=0.113 Sum_probs=54.6
Q ss_pred EEEEcccccHHHHHHHhhC--C-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572 302 VTDLYAGAGVIGLSLAAAR--K-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV 376 (457)
Q Consensus 302 vLDl~cG~G~~sl~lA~~~--~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~ 376 (457)
|||+|||+|..+..++... + ..+++|||+|++|++.++++.+.. + .+++|+++|+.++ ....+.||+|+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~--~--~~~~~~~~D~~~l-~~~~~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED--G--PKVRFVQADARDL-PFSDGKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT--T--TTSEEEESCTTCH-HHHSSSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc--C--CceEEEECCHhHC-cccCCCeeEEEE
Confidence 7999999999999999763 2 169999999999999999998762 2 2789999999774 333468999998
No 129
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.63 E-value=6.6e-07 Score=82.94 Aligned_cols=111 Identities=15% Similarity=0.095 Sum_probs=72.3
Q ss_pred CCCCCeEEEEcccccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc------cc-
Q 044572 296 VPYGASVTDLYAGAGVIGLSLAAAR-KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL------SW- 367 (457)
Q Consensus 296 ~~~~~~vLDl~cG~G~~sl~lA~~~-~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~------~~- 367 (457)
+.++++|||+|||+|.++..++... +..+|++||+++.+ .. .+++++++|+.+... ..
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~~------~~i~~~~~d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------PI------ENVDFIRGDFTDEEVLNKIRERVG 95 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------cC------CCceEEEeeCCChhHHHHHHHHhC
Confidence 3578999999999999999988754 34579999999864 11 357889999865310 11
Q ss_pred cCCccEEEECC--CCCCcc-----------HHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHH
Q 044572 368 LVGSDVLVVDP--PRKGLD-----------SSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKE 425 (457)
Q Consensus 368 ~~~~D~vi~DP--PR~Gl~-----------~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~ 425 (457)
.+.||+|+.|+ +..|.. ..+++.+.++-.+++.+++. +........++..++.
T Consensus 96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~-----~~~~~~~~~~l~~l~~ 161 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK-----VFQGEEIDEYLNELRK 161 (188)
T ss_pred CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE-----EccCccHHHHHHHHHh
Confidence 24699999995 333431 23455555444466677765 4444444556655444
No 130
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.61 E-value=7.9e-07 Score=84.04 Aligned_cols=115 Identities=13% Similarity=0.009 Sum_probs=76.9
Q ss_pred CCCCCeEEEEcccccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc--c-----cc
Q 044572 296 VPYGASVTDLYAGAGVIGLSLAAARKC-RSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--L-----SW 367 (457)
Q Consensus 296 ~~~~~~vLDl~cG~G~~sl~lA~~~~~-~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~--~-----~~ 367 (457)
+.++.+|||+|||+|.++..+++..+. .+|+|||+++. . ...+++++++|+.+.. . ..
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~---------~-----~~~~v~~i~~D~~~~~~~~~i~~~~~ 114 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM---------D-----PIVGVDFLQGDFRDELVLKALLERVG 114 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc---------c-----CCCCcEEEecCCCChHHHHHHHHHhC
Confidence 457889999999999999999986532 58999999981 1 1246899999998742 1 11
Q ss_pred cCCccEEEECC-C-CCCcc-----------HHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhccc
Q 044572 368 LVGSDVLVVDP-P-RKGLD-----------SSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQ 429 (457)
Q Consensus 368 ~~~~D~vi~DP-P-R~Gl~-----------~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~~~ 429 (457)
...+|+|+.|+ | ..|.. ..+++.+...-.+++.+++. +.......+++..++..-..
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~-----~~~~~~~~~~l~~l~~~f~~ 184 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK-----VFQGEGFDEYLREIRSLFTK 184 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE-----EecCcCHHHHHHHHHhCceE
Confidence 35799999986 4 33321 22444444444477777775 55556666776665544333
No 131
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.61 E-value=6.4e-07 Score=87.67 Aligned_cols=101 Identities=13% Similarity=-0.013 Sum_probs=71.3
Q ss_pred CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV 376 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~ 376 (457)
.++.+|||+|||+|..+..++...+ .+|+|+|+++.+++.|++++.. ..++.|+++|+.+.... .+.||+|+.
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~-~~v~giD~s~~~~~~a~~~~~~-----~~~i~~~~~D~~~~~~~-~~~FD~V~s 123 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYG-AHVHGVDICEKMVNIAKLRNSD-----KNKIEFEANDILKKDFP-ENTFDMIYS 123 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcC-CEEEEEECCHHHHHHHHHHcCc-----CCceEEEECCcccCCCC-CCCeEEEEE
Confidence 4788999999999999999986543 4899999999999999987643 25789999998754221 257999987
Q ss_pred CCCCCCc----cHHHHHHHHhcCCCCcEEEEe
Q 044572 377 DPPRKGL----DSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 377 DPPR~Gl----~~~v~~~l~~~~~~~~ivyvs 404 (457)
..--.-+ ...+++.+.++-.+++.++++
T Consensus 124 ~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~ 155 (263)
T PTZ00098 124 RDAILHLSYADKKKLFEKCYKWLKPNGILLIT 155 (263)
T ss_pred hhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 3211001 123555555544466666664
No 132
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.60 E-value=1.3e-07 Score=86.92 Aligned_cols=77 Identities=17% Similarity=0.175 Sum_probs=61.4
Q ss_pred HHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc-
Q 044572 290 RKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL- 368 (457)
Q Consensus 290 ~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~- 368 (457)
+.|.+++++|.+|||||||.|.+--.|.... .-+++|||++++.+..+.++ -+..+++|+.+.+..+.
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k-~v~g~GvEid~~~v~~cv~r----------Gv~Viq~Dld~gL~~f~d 73 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDGELLAYLKDEK-QVDGYGVEIDPDNVAACVAR----------GVSVIQGDLDEGLADFPD 73 (193)
T ss_pred HHHHHHcCCCCEEEecCCCchHHHHHHHHhc-CCeEEEEecCHHHHHHHHHc----------CCCEEECCHHHhHhhCCC
Confidence 5677788899999999999999988888754 45899999999998766542 24679999988665443
Q ss_pred CCccEEEEC
Q 044572 369 VGSDVLVVD 377 (457)
Q Consensus 369 ~~~D~vi~D 377 (457)
+.||.||+.
T Consensus 74 ~sFD~VIls 82 (193)
T PF07021_consen 74 QSFDYVILS 82 (193)
T ss_pred CCccEEehH
Confidence 679999984
No 133
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.59 E-value=5.9e-07 Score=90.65 Aligned_cols=99 Identities=12% Similarity=0.040 Sum_probs=69.6
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD 377 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D 377 (457)
++.+|||+|||+|.+++.+++..+..+|+++|.++++++.|+++... .+++++.+|+++.... .+.||+|++.
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~------~~i~~i~gD~e~lp~~-~~sFDvVIs~ 185 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------KECKIIEGDAEDLPFP-TDYADRYVSA 185 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc------cCCeEEeccHHhCCCC-CCceeEEEEc
Confidence 57899999999999999998765456899999999999999988643 3678999998764321 3579999885
Q ss_pred CCCC--CccHHHHHHHHhcCCCCcEEEE
Q 044572 378 PPRK--GLDSSLVHALQSIGSAERKAKS 403 (457)
Q Consensus 378 PPR~--Gl~~~v~~~l~~~~~~~~ivyv 403 (457)
..-. .-...+++.+.+.-.+++.+.+
T Consensus 186 ~~L~~~~d~~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 186 GSIEYWPDPQRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred ChhhhCCCHHHHHHHHHHhcCCCcEEEE
Confidence 4311 1112345555543335555444
No 134
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.56 E-value=9.2e-07 Score=83.89 Aligned_cols=100 Identities=18% Similarity=0.250 Sum_probs=74.6
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCC------CEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCc
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKC------RSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGS 371 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~------~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~ 371 (457)
++.++||++||||-+++.+.+..+. ++|+..|+|+++++.+++.++..+......+.|+++|++++... ...|
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFd-d~s~ 178 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFD-DDSF 178 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCC-CCcc
Confidence 5789999999999999999988776 78999999999999999988664332233599999999987633 3568
Q ss_pred cEEEE--------CCCCCCccHHHHHHHHhcCCCCcEEEE
Q 044572 372 DVLVV--------DPPRKGLDSSLVHALQSIGSAERKAKS 403 (457)
Q Consensus 372 D~vi~--------DPPR~Gl~~~v~~~l~~~~~~~~ivyv 403 (457)
|+..+ ||++ .+.++-+-+++.+++..+
T Consensus 179 D~yTiafGIRN~th~~k-----~l~EAYRVLKpGGrf~cL 213 (296)
T KOG1540|consen 179 DAYTIAFGIRNVTHIQK-----ALREAYRVLKPGGRFSCL 213 (296)
T ss_pred eeEEEecceecCCCHHH-----HHHHHHHhcCCCcEEEEE
Confidence 87654 4442 355566667644544444
No 135
>PLN03075 nicotianamine synthase; Provisional
Probab=98.56 E-value=1.3e-06 Score=86.18 Aligned_cols=104 Identities=14% Similarity=0.036 Sum_probs=74.6
Q ss_pred CCCeEEEEcccccHH-HHHHHh-hCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572 298 YGASVTDLYAGAGVI-GLSLAA-ARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV 375 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~-sl~lA~-~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi 375 (457)
..++|+|+|||.|.+ ++.++. .....+++++|+++++++.|+++++.. .+..++++|+.+|+.+... ....||+|+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~-~gL~~rV~F~~~Da~~~~~-~l~~FDlVF 200 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD-PDLSKRMFFHTADVMDVTE-SLKEYDVVF 200 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc-cCccCCcEEEECchhhccc-ccCCcCEEE
Confidence 578999999997744 444442 334468999999999999999998541 1344679999999987532 246899999
Q ss_pred ECCCCC----CccHHHHHHHHhcCCCCcEEEEe
Q 044572 376 VDPPRK----GLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 376 ~DPPR~----Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
++ --- .-..++++.+.+.-.+++++.+-
T Consensus 201 ~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 201 LA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred Ee-cccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 98 311 22346777777755577777775
No 136
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.55 E-value=1.6e-06 Score=82.54 Aligned_cols=114 Identities=18% Similarity=0.077 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhhC-CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCC
Q 044572 283 RAFDILLRKLQKYV-PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNS 361 (457)
Q Consensus 283 ~~~~~l~~~i~~~~-~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~ 361 (457)
.....+++.+.... ....+|||+|||+|.++..++......+|+++|+++.+++.++++.. .+++++.+|+.
T Consensus 18 ~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-------~~~~~~~~d~~ 90 (240)
T TIGR02072 18 EMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-------ENVQFICGDAE 90 (240)
T ss_pred HHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-------CCCeEEecchh
Confidence 34444555444321 23568999999999999999986544679999999999998887542 36789999987
Q ss_pred cCcccccCCccEEEECCCCC--CccHHHHHHHHhcCCCCcEEEEe
Q 044572 362 IEPLSWLVGSDVLVVDPPRK--GLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 362 ~~~~~~~~~~D~vi~DPPR~--Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
+... ..+.||+|+.+=.-. .-...+++.+...-.+++.++++
T Consensus 91 ~~~~-~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 91 KLPL-EDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred hCCC-CCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEE
Confidence 6542 235799999853210 01124666666654567777765
No 137
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.55 E-value=5e-07 Score=88.75 Aligned_cols=113 Identities=13% Similarity=0.078 Sum_probs=75.2
Q ss_pred HHHHHHHHHhhC--CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCc
Q 044572 285 FDILLRKLQKYV--PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSI 362 (457)
Q Consensus 285 ~~~l~~~i~~~~--~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~ 362 (457)
....++.+.+.+ ++|++|||+|||.|.+++.+|++.|+ +|+||.+|++.++.|++.++.. +..+++++...|..+
T Consensus 47 Q~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~--gl~~~v~v~~~D~~~ 123 (273)
T PF02353_consen 47 QERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREA--GLEDRVEVRLQDYRD 123 (273)
T ss_dssp HHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCS--TSSSTEEEEES-GGG
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhc--CCCCceEEEEeeccc
Confidence 345566666654 48999999999999999999987554 8999999999999999999874 345689999998755
Q ss_pred CcccccCCccEEEEC-CC-CCCc--cHHHHHHHHhcCCCCcEEEEe
Q 044572 363 EPLSWLVGSDVLVVD-PP-RKGL--DSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 363 ~~~~~~~~~D~vi~D-PP-R~Gl--~~~v~~~l~~~~~~~~ivyvs 404 (457)
. ...||.||.= -= -.|- -+...+.+..+-.+++.+++-
T Consensus 124 ~----~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 124 L----PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp -------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred c----CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 3 2479977641 10 0111 134666676665688888764
No 138
>PTZ00146 fibrillarin; Provisional
Probab=98.55 E-value=2.3e-06 Score=84.15 Aligned_cols=103 Identities=16% Similarity=0.038 Sum_probs=69.5
Q ss_pred CCCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc--ccccCCcc
Q 044572 296 VPYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LSWLVGSD 372 (457)
Q Consensus 296 ~~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~--~~~~~~~D 372 (457)
+.++.+|||||||+|+++.++|...+ ...|++||+++.+.++...-++. ..||.++.+|+.... ......+|
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-----r~NI~~I~~Da~~p~~y~~~~~~vD 204 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-----RPNIVPIIEDARYPQKYRMLVPMVD 204 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-----cCCCEEEECCccChhhhhcccCCCC
Confidence 35789999999999999999998753 35899999999887666655443 157899999986421 11235699
Q ss_pred EEEECCCCCCccHHHHHHHH-hcCCCCcEEEEe
Q 044572 373 VLVVDPPRKGLDSSLVHALQ-SIGSAERKAKSL 404 (457)
Q Consensus 373 ~vi~DPPR~Gl~~~v~~~l~-~~~~~~~ivyvs 404 (457)
+|++|-.-..-...++..+. -++ ++..+.++
T Consensus 205 vV~~Dva~pdq~~il~~na~r~LK-pGG~~vI~ 236 (293)
T PTZ00146 205 VIFADVAQPDQARIVALNAQYFLK-NGGHFIIS 236 (293)
T ss_pred EEEEeCCCcchHHHHHHHHHHhcc-CCCEEEEE
Confidence 99999852211112332333 455 55555553
No 139
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.54 E-value=7.7e-07 Score=84.60 Aligned_cols=101 Identities=15% Similarity=0.074 Sum_probs=72.0
Q ss_pred CeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCC
Q 044572 300 ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPP 379 (457)
Q Consensus 300 ~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPP 379 (457)
++|||+|||+|.++..++...+..+|+|+|+|+++++.|+++++.. +...+++++.+|+.... ..+.||+|+..=-
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~--gl~~~i~~~~~d~~~~~--~~~~fD~I~~~~~ 76 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRAL--GLQGRIRIFYRDSAKDP--FPDTYDLVFGFEV 76 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc--CCCcceEEEecccccCC--CCCCCCEeehHHH
Confidence 4799999999999999997654458999999999999999998763 34468999999986542 2357999875210
Q ss_pred --CCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 380 --RKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 380 --R~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
..+-...+++.+.+.-.+++.++++
T Consensus 77 l~~~~~~~~~l~~~~~~LkpgG~l~i~ 103 (224)
T smart00828 77 IHHIKDKMDLFSNISRHLKDGGHLVLA 103 (224)
T ss_pred HHhCCCHHHHHHHHHHHcCCCCEEEEE
Confidence 0000134666666654566666664
No 140
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.53 E-value=4.4e-07 Score=83.59 Aligned_cols=69 Identities=17% Similarity=0.186 Sum_probs=52.9
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572 299 GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV 376 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~ 376 (457)
-.++||+|||.|.|+..||.+ |.+++++|+++.|++.|++.... ..+|+|+++|+.+... .+.||+||+
T Consensus 44 y~~alEvGCs~G~lT~~LA~r--Cd~LlavDis~~Al~~Ar~Rl~~-----~~~V~~~~~dvp~~~P--~~~FDLIV~ 112 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPR--CDRLLAVDISPRALARARERLAG-----LPHVEWIQADVPEFWP--EGRFDLIVL 112 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGG--EEEEEEEES-HHHHHHHHHHTTT------SSEEEEES-TTT-----SS-EEEEEE
T ss_pred cceeEecCCCccHHHHHHHHh--hCceEEEeCCHHHHHHHHHhcCC-----CCCeEEEECcCCCCCC--CCCeeEEEE
Confidence 468999999999999999986 77999999999999999987653 3689999999977643 368999887
No 141
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.53 E-value=9.7e-07 Score=85.13 Aligned_cols=82 Identities=23% Similarity=0.270 Sum_probs=63.3
Q ss_pred CCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc--cccCCccE
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWLVGSDV 373 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~--~~~~~~D~ 373 (457)
.+|.+|||.|.|+|.+++.||+..+ .++|+..|..++.++.|++|++.. +..+|+++.+.|+.+... .....+|.
T Consensus 39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~--gl~~~v~~~~~Dv~~~g~~~~~~~~~Da 116 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH--GLDDNVTVHHRDVCEEGFDEELESDFDA 116 (247)
T ss_dssp -TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT--TCCTTEEEEES-GGCG--STT-TTSEEE
T ss_pred CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc--CCCCCceeEecceecccccccccCcccE
Confidence 4899999999999999999997543 469999999999999999999985 345799999999964222 22357999
Q ss_pred EEECCCC
Q 044572 374 LVVDPPR 380 (457)
Q Consensus 374 vi~DPPR 380 (457)
||+|=|-
T Consensus 117 vfLDlp~ 123 (247)
T PF08704_consen 117 VFLDLPD 123 (247)
T ss_dssp EEEESSS
T ss_pred EEEeCCC
Confidence 9999995
No 142
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=1.5e-06 Score=83.92 Aligned_cols=102 Identities=17% Similarity=0.180 Sum_probs=77.1
Q ss_pred HHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC
Q 044572 286 DILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE 363 (457)
Q Consensus 286 ~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~ 363 (457)
..+++.|.+.+. +++.||++|+|.|++|..|+++ +.+|++||+|+..++..++.... .+|++.+++|+.+.
T Consensus 16 ~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~-----~~n~~vi~~DaLk~ 88 (259)
T COG0030 16 KNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFAP-----YDNLTVINGDALKF 88 (259)
T ss_pred HHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhccc-----ccceEEEeCchhcC
Confidence 344566666543 6789999999999999999986 45899999999999988876542 36899999999875
Q ss_pred cccccCCccEEEECCCCCCccHHHHHHHHhc
Q 044572 364 PLSWLVGSDVLVVDPPRKGLDSSLVHALQSI 394 (457)
Q Consensus 364 ~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~ 394 (457)
.......++.||.|-|+.--++-+.+.+...
T Consensus 89 d~~~l~~~~~vVaNlPY~Isspii~kll~~~ 119 (259)
T COG0030 89 DFPSLAQPYKVVANLPYNISSPILFKLLEEK 119 (259)
T ss_pred cchhhcCCCEEEEcCCCcccHHHHHHHHhcc
Confidence 4221116899999999987666445444433
No 143
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.52 E-value=5.7e-07 Score=83.40 Aligned_cols=99 Identities=15% Similarity=0.095 Sum_probs=69.4
Q ss_pred HhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCcc
Q 044572 293 QKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSD 372 (457)
Q Consensus 293 ~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D 372 (457)
.+.+ +..++|||+||.|--++.||+.+- .|+|+|+|+.+++.+++-++.. + . +++....|+.+.. +...||
T Consensus 26 ~~~~-~~g~~LDlgcG~GRNalyLA~~G~--~VtAvD~s~~al~~l~~~a~~~--~-l-~i~~~~~Dl~~~~--~~~~yD 96 (192)
T PF03848_consen 26 VPLL-KPGKALDLGCGEGRNALYLASQGF--DVTAVDISPVALEKLQRLAEEE--G-L-DIRTRVADLNDFD--FPEEYD 96 (192)
T ss_dssp CTTS--SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHHT--T---TEEEEE-BGCCBS---TTTEE
T ss_pred Hhhc-CCCcEEEcCCCCcHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHhhc--C-c-eeEEEEecchhcc--ccCCcC
Confidence 3444 467999999999999999998643 8999999999999998887762 2 2 4889999987653 335799
Q ss_pred EEEE-------CCCCCCccHHHHHHHHhcCCCCcEEEE
Q 044572 373 VLVV-------DPPRKGLDSSLVHALQSIGSAERKAKS 403 (457)
Q Consensus 373 ~vi~-------DPPR~Gl~~~v~~~l~~~~~~~~ivyv 403 (457)
+|+. +|++ -+.+++.+...-.++++..+
T Consensus 97 ~I~st~v~~fL~~~~---~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 97 FIVSTVVFMFLQREL---RPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp EEEEESSGGGS-GGG---HHHHHHHHHHTEEEEEEEEE
T ss_pred EEEEEEEeccCCHHH---HHHHHHHHHhhcCCcEEEEE
Confidence 8864 4443 24577777765446666444
No 144
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.51 E-value=1.5e-06 Score=89.55 Aligned_cols=106 Identities=16% Similarity=-0.010 Sum_probs=74.1
Q ss_pred HHHHHHhhC--CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc
Q 044572 288 LLRKLQKYV--PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL 365 (457)
Q Consensus 288 l~~~i~~~~--~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~ 365 (457)
.+..+.+.+ .++.+|||+|||+|.+++.+|+..+ .+|+|||+|+++++.|+++++. .++++..+|..+.
T Consensus 155 k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g-~~V~giDlS~~~l~~A~~~~~~------l~v~~~~~D~~~l-- 225 (383)
T PRK11705 155 KLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYG-VSVVGVTISAEQQKLAQERCAG------LPVEIRLQDYRDL-- 225 (383)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhcc------CeEEEEECchhhc--
Confidence 334444433 4788999999999999999997644 3899999999999999998743 1478888887543
Q ss_pred cccCCccEEEECCCC--CCcc--HHHHHHHHhcCCCCcEEEEe
Q 044572 366 SWLVGSDVLVVDPPR--KGLD--SSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 366 ~~~~~~D~vi~DPPR--~Gl~--~~v~~~l~~~~~~~~ivyvs 404 (457)
.+.||.|+...-- .|.. ..+++.+.++-.+++.+++.
T Consensus 226 --~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 226 --NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred --CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 3579998864321 1111 24555555554577777764
No 145
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.51 E-value=1.5e-06 Score=86.89 Aligned_cols=113 Identities=14% Similarity=0.046 Sum_probs=74.0
Q ss_pred HHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC
Q 044572 286 DILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE 363 (457)
Q Consensus 286 ~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~ 363 (457)
+..+..+...+. ++++|||+|||+|.+++.++.. ++.+|+|||.|+.++..++...+.. ....++.+..+++.+.
T Consensus 107 ~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~-g~~~v~GiDpS~~ml~q~~~~~~~~--~~~~~v~~~~~~ie~l 183 (314)
T TIGR00452 107 DIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGH-GAKSLVGIDPTVLFLCQFEAVRKLL--DNDKRAILEPLGIEQL 183 (314)
T ss_pred HHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHHHHHh--ccCCCeEEEECCHHHC
Confidence 333445555432 6889999999999999998874 5678999999999998765443321 1124678888888765
Q ss_pred cccccCCccEEEECCC---CCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 364 PLSWLVGSDVLVVDPP---RKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 364 ~~~~~~~~D~vi~DPP---R~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
.. ...||+|+..=- +.. ...+++.+.+.-.+++.++++
T Consensus 184 p~--~~~FD~V~s~gvL~H~~d-p~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 184 HE--LYAFDTVFSMGVLYHRKS-PLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred CC--CCCcCEEEEcchhhccCC-HHHHHHHHHHhcCCCCEEEEE
Confidence 32 247999986311 111 124666666644466666654
No 146
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.51 E-value=4.9e-07 Score=85.03 Aligned_cols=116 Identities=16% Similarity=0.087 Sum_probs=84.8
Q ss_pred HHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC
Q 044572 285 FDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE 363 (457)
Q Consensus 285 ~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~ 363 (457)
...++..+.... ..++||++|+|+|.-++.+|...+ -.+|+.||.+++..+.|++|++..+ ..++|+++.||+.+.
T Consensus 33 ~g~lL~~l~~~~-~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag--~~~~I~~~~gda~~~ 109 (205)
T PF01596_consen 33 TGQLLQMLVRLT-RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG--LDDRIEVIEGDALEV 109 (205)
T ss_dssp HHHHHHHHHHHH-T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT--GGGGEEEEES-HHHH
T ss_pred HHHHHHHHHHhc-CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC--CCCcEEEEEeccHhh
Confidence 345556655544 468999999999999999997432 3599999999999999999999853 447899999999876
Q ss_pred ccccc-----CCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 364 PLSWL-----VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 364 ~~~~~-----~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
+..+. +.||+||+|=.......-+-..+..+ .+++++.+-
T Consensus 110 l~~l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll-~~ggvii~D 154 (205)
T PF01596_consen 110 LPELANDGEEGQFDFVFIDADKRNYLEYFEKALPLL-RPGGVIIAD 154 (205)
T ss_dssp HHHHHHTTTTTSEEEEEEESTGGGHHHHHHHHHHHE-EEEEEEEEE
T ss_pred HHHHHhccCCCceeEEEEcccccchhhHHHHHhhhc-cCCeEEEEc
Confidence 65431 36999999998655443333333444 477777764
No 147
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.50 E-value=6.7e-07 Score=85.20 Aligned_cols=71 Identities=21% Similarity=0.269 Sum_probs=57.3
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV 376 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~ 376 (457)
++.+|||+|||+|.++..++... .+|+|+|+++.+++.|++++... +..++++|+.+|... ..+.||+|+.
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~--~~~~~i~~~~~d~~~----~~~~fD~v~~ 133 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEA--GLAGNITFEVGDLES----LLGRFDTVVC 133 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhc--CCccCcEEEEcCchh----ccCCcCEEEE
Confidence 57899999999999999999753 37999999999999999998763 222578999999432 2357998876
No 148
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.50 E-value=6.5e-07 Score=72.22 Aligned_cols=66 Identities=23% Similarity=0.270 Sum_probs=52.3
Q ss_pred EEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572 303 TDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV 376 (457)
Q Consensus 303 LDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~ 376 (457)
||+|||+|.++..+++. +..+|+++|+++++++.++++... .++.++.+|+.+.... .+.||+|+.
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~------~~~~~~~~d~~~l~~~-~~sfD~v~~ 66 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN------EGVSFRQGDAEDLPFP-DNSFDVVFS 66 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT------STEEEEESBTTSSSS--TT-EEEEEE
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc------cCchheeehHHhCccc-ccccccccc
Confidence 89999999999999986 457999999999999999998654 3566999999886432 467999976
No 149
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.50 E-value=1.5e-06 Score=85.44 Aligned_cols=84 Identities=17% Similarity=0.148 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhhCC-CCCeEEEEcccccHHHHHHHhhCC---CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEcc
Q 044572 284 AFDILLRKLQKYVP-YGASVTDLYAGAGVIGLSLAAARK---CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNAD 359 (457)
Q Consensus 284 ~~~~l~~~i~~~~~-~~~~vLDl~cG~G~~sl~lA~~~~---~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d 359 (457)
..+.+.+.+.+.+. ...+|||+|||+|.++..++...+ ...|+|+|+|+.|++.|+++. .++.|..+|
T Consensus 70 l~~~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~--------~~~~~~~~d 141 (272)
T PRK11088 70 LRDAVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY--------PQVTFCVAS 141 (272)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC--------CCCeEEEee
Confidence 33444455555443 457899999999999999886532 137999999999999987642 357899999
Q ss_pred CCcCcccccCCccEEEE
Q 044572 360 NSIEPLSWLVGSDVLVV 376 (457)
Q Consensus 360 ~~~~~~~~~~~~D~vi~ 376 (457)
+.+.... .+.||+|+.
T Consensus 142 ~~~lp~~-~~sfD~I~~ 157 (272)
T PRK11088 142 SHRLPFA-DQSLDAIIR 157 (272)
T ss_pred cccCCCc-CCceeEEEE
Confidence 8775322 357998875
No 150
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.49 E-value=1.4e-06 Score=82.55 Aligned_cols=106 Identities=19% Similarity=0.059 Sum_probs=66.3
Q ss_pred CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCC---------CCCCCcEEEEEccCCcCcccc
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLP---------KSVDGNISWHNADNSIEPLSW 367 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~---------~~~~~nv~~~~~d~~~~~~~~ 367 (457)
.++.+|||+|||.|..++.||.++ -.|+|||+|+.|++.|.+.+.... .....+++++++|+++.....
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G--~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQG--HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCC--CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 367899999999999999999853 389999999999998643221100 001246899999998765333
Q ss_pred cCCccEEEECCCCCCc----cHHHHHHHHhcCCCCc-EEEEe
Q 044572 368 LVGSDVLVVDPPRKGL----DSSLVHALQSIGSAER-KAKSL 404 (457)
Q Consensus 368 ~~~~D~vi~DPPR~Gl----~~~v~~~l~~~~~~~~-ivyvs 404 (457)
...||.|+-----..+ -...++.+.++-.+++ +++++
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 3457765421000011 1234555555444555 55553
No 151
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=98.49 E-value=9.1e-08 Score=92.35 Aligned_cols=145 Identities=18% Similarity=0.201 Sum_probs=98.7
Q ss_pred CeEEEeeccCeEEE-eeeeEEEEECC--CCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEE
Q 044572 250 NRWRHLLGETDFWE-NVGGIDISLAP--SSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVK 326 (457)
Q Consensus 250 ~~~~~l~G~~~~~~-~~~g~~~~i~~--~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~ 326 (457)
...+.|+|+.-+.+ .-+|++|.++| ..|...|...-. ++..+...++.|+|||+|.|.|+++..-+.||+.|+
T Consensus 147 ~~v~~L~Gd~gWV~~v~NGI~~~~d~t~~MFS~GN~~EK~----Rv~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~ 222 (351)
T KOG1227|consen 147 PNVQPLYGDLGWVKHVQNGITQIWDPTKTMFSRGNIKEKK----RVLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVF 222 (351)
T ss_pred CccccccccccceeehhcCeEEEechhhhhhhcCcHHHHH----HhhhcccccchhhhhhcccceEEeehhhccCccEEE
Confidence 35678999876554 34699999997 688888854433 344444468999999999999999665568899999
Q ss_pred EEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC--CCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 327 CVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD--PPRKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 327 gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D--PPR~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
|+|.||.+++..++|++.| +..+....+.||....-. ....|-|.+- |.-.+--...+++|..- .+.++.|-
T Consensus 223 A~EwNp~svEaLrR~~~~N--~V~~r~~i~~gd~R~~~~--~~~AdrVnLGLlPSse~~W~~A~k~Lk~e--ggsilHIH 296 (351)
T KOG1227|consen 223 ACEWNPWSVEALRRNAEAN--NVMDRCRITEGDNRNPKP--RLRADRVNLGLLPSSEQGWPTAIKALKPE--GGSILHIH 296 (351)
T ss_pred EEecCHHHHHHHHHHHHhc--chHHHHHhhhccccccCc--cccchheeeccccccccchHHHHHHhhhc--CCcEEEEe
Confidence 9999999999999999984 455666677777644322 2345655442 22222222344444332 34488875
No 152
>PRK06922 hypothetical protein; Provisional
Probab=98.48 E-value=1.5e-06 Score=93.32 Aligned_cols=78 Identities=15% Similarity=0.155 Sum_probs=62.0
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc-cCCccEEEE
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW-LVGSDVLVV 376 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~-~~~~D~vi~ 376 (457)
++.+|||+|||+|.++..+|......+|+|+|+|+.|++.|++++... ..+++++++|+.+....+ .+.||+|+.
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~----g~~ie~I~gDa~dLp~~fedeSFDvVVs 493 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE----GRSWNVIKGDAINLSSSFEKESVDTIVY 493 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc----CCCeEEEEcchHhCccccCCCCEEEEEE
Confidence 578999999999999998887554569999999999999999987642 146889999987643112 257999998
Q ss_pred CCC
Q 044572 377 DPP 379 (457)
Q Consensus 377 DPP 379 (457)
+++
T Consensus 494 n~v 496 (677)
T PRK06922 494 SSI 496 (677)
T ss_pred chH
Confidence 764
No 153
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=3.8e-06 Score=75.91 Aligned_cols=76 Identities=22% Similarity=0.157 Sum_probs=63.6
Q ss_pred CCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572 299 GASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD 377 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D 377 (457)
-+.++|+|||+|..+-.|++.-+ .....+.|+|++|.+..++.|+.|+ .++..++.|+.+.+.. ++.|++++|
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~----~~~~~V~tdl~~~l~~--~~VDvLvfN 117 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR----VHIDVVRTDLLSGLRN--ESVDVLVFN 117 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC----CccceeehhHHhhhcc--CCccEEEEC
Confidence 56799999999999988887533 4568999999999999999998743 3578899998876654 789999999
Q ss_pred CCC
Q 044572 378 PPR 380 (457)
Q Consensus 378 PPR 380 (457)
||+
T Consensus 118 PPY 120 (209)
T KOG3191|consen 118 PPY 120 (209)
T ss_pred CCc
Confidence 996
No 154
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=3.9e-06 Score=85.59 Aligned_cols=112 Identities=21% Similarity=0.174 Sum_probs=83.2
Q ss_pred CCCCeEEEEcccccHHHHHHHhhCC--CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc--CCcc
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAARK--CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL--VGSD 372 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~~--~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~--~~~D 372 (457)
.+|++|||+|++-|+=|.++|.... ...|+++|+++.=++..++|+++++ ..|+..++.|.......+. ..||
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG---~~nv~~~~~d~~~~~~~~~~~~~fD 231 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG---VRNVIVVNKDARRLAELLPGGEKFD 231 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC---CCceEEEecccccccccccccCcCc
Confidence 4799999999999999999987643 2357999999999999999999953 4678888888765543332 2499
Q ss_pred EEEECCCCCCccH------------------------HHHH-HHHhcCCCCcEEEEeccCCCCCchhch
Q 044572 373 VLVVDPPRKGLDS------------------------SLVH-ALQSIGSAERKAKSLSESSSSMVKEEK 416 (457)
Q Consensus 373 ~vi~DPPR~Gl~~------------------------~v~~-~l~~~~~~~~ivyvs~~~~~c~~~~~~ 416 (457)
.|++|+|-+|..- ++++ ++..+++++.+||++ |+.....
T Consensus 232 ~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST-----CS~~~eE 295 (355)
T COG0144 232 RILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST-----CSLTPEE 295 (355)
T ss_pred EEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc-----cCCchhc
Confidence 9999999554321 1222 333456789999998 8866543
No 155
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.44 E-value=4.6e-06 Score=79.49 Aligned_cols=103 Identities=16% Similarity=0.171 Sum_probs=72.0
Q ss_pred CCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV 376 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~ 376 (457)
++.+|||+|||+|.++..++...+ ..+|+++|+++.+++.+++++... +...++.++.+|+.+.... ...||+|++
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~~~~~-~~~~D~I~~ 127 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDL--GLSGNVEFVQGDAEALPFP-DNSFDAVTI 127 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccc--ccccCeEEEecccccCCCC-CCCccEEEE
Confidence 578999999999999999998653 369999999999999999998652 2335789999998775422 357999886
Q ss_pred CCCCC--CccHHHHHHHHhcCCCCcEEEE
Q 044572 377 DPPRK--GLDSSLVHALQSIGSAERKAKS 403 (457)
Q Consensus 377 DPPR~--Gl~~~v~~~l~~~~~~~~ivyv 403 (457)
.---. .-...+++.+..+-.+++.+.+
T Consensus 128 ~~~l~~~~~~~~~l~~~~~~L~~gG~li~ 156 (239)
T PRK00216 128 AFGLRNVPDIDKALREMYRVLKPGGRLVI 156 (239)
T ss_pred ecccccCCCHHHHHHHHHHhccCCcEEEE
Confidence 32100 0112455555554445554444
No 156
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.44 E-value=1.8e-06 Score=84.33 Aligned_cols=81 Identities=19% Similarity=0.151 Sum_probs=64.2
Q ss_pred HHHHHhh--CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccc
Q 044572 289 LRKLQKY--VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS 366 (457)
Q Consensus 289 ~~~i~~~--~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~ 366 (457)
++.+.+. +++|++|||+|||-|.+++.+|+..+ .+|+||++|++..+.+++-++.. +...+++++-.|-.++.
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~-v~V~GvTlS~~Q~~~~~~r~~~~--gl~~~v~v~l~d~rd~~-- 135 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYG-VTVVGVTLSEEQLAYAEKRIAAR--GLEDNVEVRLQDYRDFE-- 135 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcC-CEEEEeeCCHHHHHHHHHHHHHc--CCCcccEEEeccccccc--
Confidence 3444443 35899999999999999999998753 58999999999999999988774 34468999888876643
Q ss_pred ccCCccEEEE
Q 044572 367 WLVGSDVLVV 376 (457)
Q Consensus 367 ~~~~~D~vi~ 376 (457)
+.||.||.
T Consensus 136 --e~fDrIvS 143 (283)
T COG2230 136 --EPFDRIVS 143 (283)
T ss_pred --cccceeee
Confidence 34897764
No 157
>PRK08317 hypothetical protein; Provisional
Probab=98.43 E-value=5.4e-06 Score=78.83 Aligned_cols=102 Identities=14% Similarity=0.087 Sum_probs=69.9
Q ss_pred CCCCeEEEEcccccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAAR-KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV 375 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~-~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi 375 (457)
.++.+|||+|||+|.++..++... ...+|+|+|+++.+++.|+++... ...+++++.+|+...... ...||+|+
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~----~~~~~~~~~~d~~~~~~~-~~~~D~v~ 92 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG----LGPNVEFVRGDADGLPFP-DGSFDAVR 92 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC----CCCceEEEecccccCCCC-CCCceEEE
Confidence 367899999999999999999764 246899999999999999988432 235789999998764321 35799998
Q ss_pred ECCCCCCc--cHHHHHHHHhcCCCCcEEEE
Q 044572 376 VDPPRKGL--DSSLVHALQSIGSAERKAKS 403 (457)
Q Consensus 376 ~DPPR~Gl--~~~v~~~l~~~~~~~~ivyv 403 (457)
++---.-+ ...+++.+.++-.+++.+.+
T Consensus 93 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~ 122 (241)
T PRK08317 93 SDRVLQHLEDPARALAEIARVLRPGGRVVV 122 (241)
T ss_pred EechhhccCCHHHHHHHHHHHhcCCcEEEE
Confidence 75321100 12345555443334554444
No 158
>PRK05785 hypothetical protein; Provisional
Probab=98.42 E-value=1.5e-06 Score=83.10 Aligned_cols=79 Identities=15% Similarity=0.063 Sum_probs=58.4
Q ss_pred HHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccc
Q 044572 287 ILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS 366 (457)
Q Consensus 287 ~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~ 366 (457)
.+++.+..+..++.+|||+|||+|.++..++... ..+|+|||.|++|++.|+++. .++++|+++....
T Consensus 40 ~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~-----------~~~~~d~~~lp~~ 107 (226)
T PRK05785 40 ELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD-----------DKVVGSFEALPFR 107 (226)
T ss_pred HHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc-----------ceEEechhhCCCC
Confidence 4445555544457899999999999999999763 249999999999999987531 3567888765322
Q ss_pred ccCCccEEEECC
Q 044572 367 WLVGSDVLVVDP 378 (457)
Q Consensus 367 ~~~~~D~vi~DP 378 (457)
.+.||+|++.-
T Consensus 108 -d~sfD~v~~~~ 118 (226)
T PRK05785 108 -DKSFDVVMSSF 118 (226)
T ss_pred -CCCEEEEEecC
Confidence 36799998743
No 159
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.42 E-value=1.4e-06 Score=85.21 Aligned_cols=129 Identities=12% Similarity=0.126 Sum_probs=82.8
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHhhC------CCCCeEEEEcccccH----HHHHHHhhCC-----CCEEEEEeCCHHHH
Q 044572 271 SLAPSSFGQANTRAFDILLRKLQKYV------PYGASVTDLYAGAGV----IGLSLAAARK-----CRSVKCVEINKESQ 335 (457)
Q Consensus 271 ~i~~~~FfQ~n~~~~~~l~~~i~~~~------~~~~~vLDl~cG~G~----~sl~lA~~~~-----~~~V~gVE~~~~av 335 (457)
.+..+.||.. ..+.+.|.+.+...+ ..+.+|||+|||+|- +++.++.... ..+|+|+|+|+.|+
T Consensus 67 ti~~T~FfR~-~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L 145 (264)
T smart00138 67 TTNETRFFRE-SKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKAL 145 (264)
T ss_pred hcCCCcccCC-cHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHH
Confidence 4456788874 456666666554321 134689999999995 6666665322 24899999999999
Q ss_pred HHHHHHHh------hCC-----------C-------CCCCcEEEEEccCCcCcccccCCccEEEECCCCCCc-------c
Q 044572 336 LSFEKTVS------RLP-----------K-------SVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGL-------D 384 (457)
Q Consensus 336 ~~A~~Na~------~~~-----------~-------~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl-------~ 384 (457)
+.|++++- ... . ....+|+|.++|+.+.... .+.||+|++ |..+ .
T Consensus 146 ~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~-~~~fD~I~c---rnvl~yf~~~~~ 221 (264)
T smart00138 146 EKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPP-LGDFDLIFC---RNVLIYFDEPTQ 221 (264)
T ss_pred HHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCc-cCCCCEEEe---chhHHhCCHHHH
Confidence 99998641 000 0 0114789999999875321 367999987 3221 1
Q ss_pred HHHHHHHHhcCCCCcEEEEe
Q 044572 385 SSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 385 ~~v~~~l~~~~~~~~ivyvs 404 (457)
..+++.+...-.+++.+++.
T Consensus 222 ~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 222 RKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred HHHHHHHHHHhCCCeEEEEE
Confidence 23555555544577777775
No 160
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.39 E-value=1.6e-06 Score=80.80 Aligned_cols=94 Identities=14% Similarity=0.199 Sum_probs=64.8
Q ss_pred HHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc-c
Q 044572 290 RKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW-L 368 (457)
Q Consensus 290 ~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~-~ 368 (457)
+.+.++++++.+|||+|||+|.++..++...+ ..++|||+++++++.|+++ +++++++|+.+.+... .
T Consensus 5 ~~i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~-~~~~giD~s~~~i~~a~~~----------~~~~~~~d~~~~l~~~~~ 73 (194)
T TIGR02081 5 ESILNLIPPGSRVLDLGCGDGELLALLRDEKQ-VRGYGIEIDQDGVLACVAR----------GVNVIQGDLDEGLEAFPD 73 (194)
T ss_pred HHHHHhcCCCCEEEEeCCCCCHHHHHHHhccC-CcEEEEeCCHHHHHHHHHc----------CCeEEEEEhhhcccccCC
Confidence 44555566788999999999999999986433 4789999999999887531 3578889987533212 3
Q ss_pred CCccEEEECCCCCCc--cHHHHHHHHhc
Q 044572 369 VGSDVLVVDPPRKGL--DSSLVHALQSI 394 (457)
Q Consensus 369 ~~~D~vi~DPPR~Gl--~~~v~~~l~~~ 394 (457)
+.||+|++...-.-+ ...+++.+.+.
T Consensus 74 ~sfD~Vi~~~~l~~~~d~~~~l~e~~r~ 101 (194)
T TIGR02081 74 KSFDYVILSQTLQATRNPEEILDEMLRV 101 (194)
T ss_pred CCcCEEEEhhHhHcCcCHHHHHHHHHHh
Confidence 579999987653222 12345555444
No 161
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.39 E-value=4.7e-06 Score=78.70 Aligned_cols=117 Identities=14% Similarity=0.062 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEE-ccCC
Q 044572 284 AFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHN-ADNS 361 (457)
Q Consensus 284 ~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~-~d~~ 361 (457)
....++..+.... +.++||++|.+.|.-++.+|.... -.+++.||++++..+.|++|.+.. +..++++.+. +|+.
T Consensus 46 e~g~~L~~L~~~~-~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~a--g~~~~i~~~~~gdal 122 (219)
T COG4122 46 ETGALLRLLARLS-GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEA--GVDDRIELLLGGDAL 122 (219)
T ss_pred hHHHHHHHHHHhc-CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHc--CCcceEEEEecCcHH
Confidence 3445556666644 678999999999999999997544 468999999999999999999985 3445688888 5887
Q ss_pred cCccc-ccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 362 IEPLS-WLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 362 ~~~~~-~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
+.+.. ..+.||+||+|=-..-. ++.++.+..+-.++++|.+-
T Consensus 123 ~~l~~~~~~~fDliFIDadK~~y-p~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 123 DVLSRLLDGSFDLVFIDADKADY-PEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred HHHHhccCCCccEEEEeCChhhC-HHHHHHHHHHhCCCcEEEEe
Confidence 76654 34789999999764443 34566555555588888873
No 162
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.39 E-value=2.3e-06 Score=78.49 Aligned_cols=123 Identities=20% Similarity=0.191 Sum_probs=70.9
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc-ccc--cCCccEE
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP-LSW--LVGSDVL 374 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~-~~~--~~~~D~v 374 (457)
.+.+|||||||+|..|+.+|...++.+|+.-|.++ +++.++.|++.|+.....++++...|..+.. ... ...||+|
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~I 123 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVI 123 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEE
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEE
Confidence 68899999999999999999874678999999999 9999999999853213457788777765432 111 2469987
Q ss_pred EE-CCCCC-CccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHH
Q 044572 375 VV-DPPRK-GLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKE 425 (457)
Q Consensus 375 i~-DPPR~-Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~ 425 (457)
+. |==+. .+.+.+++.+..+-.++..+|++...+ ....+.|++.+++
T Consensus 124 lasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R----~~~~~~F~~~~~k 172 (173)
T PF10294_consen 124 LASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR----RKSEQEFFDRLKK 172 (173)
T ss_dssp EEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S-----TGGCHHHHHH--
T ss_pred EEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe----cHHHHHHHHHhhh
Confidence 65 22221 234456677766544555588762222 2234667777654
No 163
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.38 E-value=6.7e-06 Score=82.07 Aligned_cols=111 Identities=7% Similarity=-0.051 Sum_probs=71.3
Q ss_pred HHHhhCCCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccC
Q 044572 291 KLQKYVPYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLV 369 (457)
Q Consensus 291 ~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~ 369 (457)
.+.+.+.++.+|||||||+|..+..++.... ..+|++||+|++|++.|++++... ....++.++++|..+... +..
T Consensus 56 ~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~--~p~~~v~~i~gD~~~~~~-~~~ 132 (301)
T TIGR03438 56 EIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD--YPQLEVHGICADFTQPLA-LPP 132 (301)
T ss_pred HHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh--CCCceEEEEEEcccchhh-hhc
Confidence 3344455678999999999999999987532 358999999999999999987652 112367889999876421 112
Q ss_pred C-----ccEEEECCCCCCccH----HHHHHHHhcCCCCcEEEEe
Q 044572 370 G-----SDVLVVDPPRKGLDS----SLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 370 ~-----~D~vi~DPPR~Gl~~----~v~~~l~~~~~~~~ivyvs 404 (457)
. ..+++++-.-.-+++ .+++.+.+.-.+++.+.+.
T Consensus 133 ~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 133 EPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred ccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 2 234555443222222 2455554443466666654
No 164
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.38 E-value=1.9e-06 Score=85.22 Aligned_cols=131 Identities=19% Similarity=0.132 Sum_probs=91.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcE
Q 044572 275 SSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNI 353 (457)
Q Consensus 275 ~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv 353 (457)
.++|.++- ....+...++. ..++++|||+||+.|+=+.++|...+ -..|+++|+++.-+...+.|+++++ ..++
T Consensus 64 ~G~~~vQd-~sS~l~~~~L~-~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g---~~~v 138 (283)
T PF01189_consen 64 NGLFYVQD-ESSQLVALALD-PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG---VFNV 138 (283)
T ss_dssp TTSEEEHH-HHHHHHHHHHT-TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT----SSE
T ss_pred CCcEEecc-ccccccccccc-ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC---CceE
Confidence 34454432 23333333343 24789999999999999999998654 4699999999999999999999853 4688
Q ss_pred EEEEccCCcCcccccC-CccEEEECCCCCCccH------------------------HHHH-HHHhc----CCCCcEEEE
Q 044572 354 SWHNADNSIEPLSWLV-GSDVLVVDPPRKGLDS------------------------SLVH-ALQSI----GSAERKAKS 403 (457)
Q Consensus 354 ~~~~~d~~~~~~~~~~-~~D~vi~DPPR~Gl~~------------------------~v~~-~l~~~----~~~~~ivyv 403 (457)
.....|+......... .||.|++|+|-+|... ++++ +...+ ++.+++||.
T Consensus 139 ~~~~~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYs 218 (283)
T PF01189_consen 139 IVINADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYS 218 (283)
T ss_dssp EEEESHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEE
T ss_pred EEEeeccccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEE
Confidence 8888887665332223 5999999999776521 1222 23334 568899999
Q ss_pred eccCCCCCchhc
Q 044572 404 LSESSSSMVKEE 415 (457)
Q Consensus 404 s~~~~~c~~~~~ 415 (457)
+ |+....
T Consensus 219 T-----CS~~~e 225 (283)
T PF01189_consen 219 T-----CSLSPE 225 (283)
T ss_dssp E-----SHHHGG
T ss_pred e-----ccHHHH
Confidence 8 886544
No 165
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.36 E-value=3.3e-06 Score=76.29 Aligned_cols=77 Identities=17% Similarity=0.171 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhhC-----CC-CCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044572 284 AFDILLRKLQKYV-----PY-GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHN 357 (457)
Q Consensus 284 ~~~~l~~~i~~~~-----~~-~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~ 357 (457)
+-+++++++.+.+ .+ ..+|||||||.|.+-..|+...-....+|||.++.|++.|+.-+++. ...+.|+|.+
T Consensus 47 ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~--~~~n~I~f~q 124 (227)
T KOG1271|consen 47 AEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERD--GFSNEIRFQQ 124 (227)
T ss_pred HHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhc--CCCcceeEEE
Confidence 3456666665543 22 34999999999999999998542345999999999999998777773 2333499999
Q ss_pred ccCCc
Q 044572 358 ADNSI 362 (457)
Q Consensus 358 ~d~~~ 362 (457)
.|+.+
T Consensus 125 ~DI~~ 129 (227)
T KOG1271|consen 125 LDITD 129 (227)
T ss_pred eeccC
Confidence 99986
No 166
>PLN02823 spermine synthase
Probab=98.36 E-value=3.9e-06 Score=84.70 Aligned_cols=107 Identities=14% Similarity=0.060 Sum_probs=79.7
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCC-CCCcEEEEEccCCcCcccccCCccEEEE
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKS-VDGNISWHNADNSIEPLSWLVGSDVLVV 376 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~-~~~nv~~~~~d~~~~~~~~~~~~D~vi~ 376 (457)
..++||.+|+|.|..+..+.+.....+|+.||++++.++.|++....+... ...+++++.+|+..++....++||+||+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 457899999999999998887555679999999999999999987542111 2468999999999877554568999999
Q ss_pred CCCC---CC-----ccHHHHH-HHHhcCCCCcEEEEe
Q 044572 377 DPPR---KG-----LDSSLVH-ALQSIGSAERKAKSL 404 (457)
Q Consensus 377 DPPR---~G-----l~~~v~~-~l~~~~~~~~ivyvs 404 (457)
|.+- .| ...+..+ .+.+.-.+++++.+-
T Consensus 183 D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 183 DLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 9542 12 2446665 555544577776654
No 167
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=2.2e-06 Score=85.63 Aligned_cols=121 Identities=16% Similarity=0.113 Sum_probs=87.9
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEc
Q 044572 279 QANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNA 358 (457)
Q Consensus 279 Q~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~ 358 (457)
|.|+...-..++...+.. ..+|+|.+||||.=|+.+|...+..+|+.-|+|++|++.+++|++.| ...+...++.
T Consensus 35 ~~NRDlsV~~l~~~~~~~--~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N---~~~~~~v~n~ 109 (380)
T COG1867 35 EFNRDLSVLVLKAFGKLL--PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLN---SGEDAEVINK 109 (380)
T ss_pred hhccchhHHHHHHhhccC--CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhc---Ccccceeecc
Confidence 345555544444433321 67899999999999999998777668999999999999999999984 2345667779
Q ss_pred cCCcCcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEecc
Q 044572 359 DNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSLSE 406 (457)
Q Consensus 359 d~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~ 406 (457)
|+..++.+....||+|=+|| .|-....+++.......++++-++.+
T Consensus 110 DAN~lm~~~~~~fd~IDiDP--FGSPaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 110 DANALLHELHRAFDVIDIDP--FGSPAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred hHHHHHHhcCCCccEEecCC--CCCCchHHHHHHHHhhcCCEEEEEec
Confidence 98877765446899999999 34334455554444335788888753
No 168
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.36 E-value=2.7e-06 Score=90.24 Aligned_cols=99 Identities=18% Similarity=0.048 Sum_probs=68.8
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc-cCCccEEEE
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW-LVGSDVLVV 376 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~-~~~~D~vi~ 376 (457)
++.+|||+|||+|.++..++.. ..+|+|||.++.+++.+++.. +...+++++++|+......+ .+.||+|++
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~~-----~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~ 109 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESIN-----GHYKNVKFMCADVTSPDLNISDGSVDLIFS 109 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHh-----ccCCceEEEEecccccccCCCCCCEEEEeh
Confidence 4679999999999999999976 459999999999998765421 22367999999986432112 257999999
Q ss_pred CCCCCCcc----HHHHHHHHhcCCCCcEEEE
Q 044572 377 DPPRKGLD----SSLVHALQSIGSAERKAKS 403 (457)
Q Consensus 377 DPPR~Gl~----~~v~~~l~~~~~~~~ivyv 403 (457)
+.+-.-+. ..+++.+.+.-.+++++++
T Consensus 110 ~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~ 140 (475)
T PLN02336 110 NWLLMYLSDKEVENLAERMVKWLKVGGYIFF 140 (475)
T ss_pred hhhHHhCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 88633222 2345555443335555544
No 169
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=98.33 E-value=6.2e-07 Score=91.85 Aligned_cols=103 Identities=18% Similarity=0.167 Sum_probs=75.3
Q ss_pred CCeEEEEcccccHHHHHHHhh-CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCC-cEEEEEccCCcCcccccCCccEEEE
Q 044572 299 GASVTDLYAGAGVIGLSLAAA-RKCRSVKCVEINKESQLSFEKTVSRLPKSVDG-NISWHNADNSIEPLSWLVGSDVLVV 376 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~-~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~-nv~~~~~d~~~~~~~~~~~~D~vi~ 376 (457)
.-++||..||||.=|+..|.. .+..+|++-|+|++|++.+++|++.|+ ... .++..+.|+...+......||+|=+
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~--~~~~~~~v~~~DAn~ll~~~~~~fD~IDl 127 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNG--LEDERIEVSNMDANVLLYSRQERFDVIDL 127 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT---SGCCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcc--ccCceEEEehhhHHHHhhhccccCCEEEe
Confidence 348999999999999999987 567899999999999999999999853 333 5899999998765433467999999
Q ss_pred CCCCCCccHHHHHHHHhcCCCCcEEEEec
Q 044572 377 DPPRKGLDSSLVHALQSIGSAERKAKSLS 405 (457)
Q Consensus 377 DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~ 405 (457)
|| .|-....+++..+....++++++++
T Consensus 128 DP--fGSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 128 DP--FGSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp ----SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred CC--CCCccHhHHHHHHHhhcCCEEEEec
Confidence 99 5655566666555444778999984
No 170
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.32 E-value=1.6e-06 Score=85.74 Aligned_cols=88 Identities=10% Similarity=0.039 Sum_probs=68.8
Q ss_pred HHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC
Q 044572 287 ILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE 363 (457)
Q Consensus 287 ~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~ 363 (457)
.|++.+++.+. ++..+||+.||.|+.+..++...+ ..+|+|+|.+++|++.|+++++. .++++++++|..++
T Consensus 6 Vll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-----~~ri~~i~~~f~~l 80 (296)
T PRK00050 6 VLLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-----FGRFTLVHGNFSNL 80 (296)
T ss_pred ccHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-----CCcEEEEeCCHHHH
Confidence 45666666653 678999999999999999998653 35899999999999999987643 35899999998765
Q ss_pred cccccC---CccEEEECCC
Q 044572 364 PLSWLV---GSDVLVVDPP 379 (457)
Q Consensus 364 ~~~~~~---~~D~vi~DPP 379 (457)
...... .+|.|++|.-
T Consensus 81 ~~~l~~~~~~vDgIl~DLG 99 (296)
T PRK00050 81 KEVLAEGLGKVDGILLDLG 99 (296)
T ss_pred HHHHHcCCCccCEEEECCC
Confidence 332222 6999998775
No 171
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.32 E-value=3.6e-06 Score=80.05 Aligned_cols=98 Identities=20% Similarity=0.144 Sum_probs=65.5
Q ss_pred CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCC---------CCCCCcEEEEEccCCcCcccc
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLP---------KSVDGNISWHNADNSIEPLSW 367 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~---------~~~~~nv~~~~~d~~~~~~~~ 367 (457)
.++.+|||++||.|..++.||.++ -+|+|||+|+.|++.+........ .....+|+++++|+++.....
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G--~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQG--HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCC--CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 357899999999999999999853 389999999999998643111100 001257899999998865443
Q ss_pred cCCccEEE-------ECCCCCCccHHHHHHHHhcCCCCc
Q 044572 368 LVGSDVLV-------VDPPRKGLDSSLVHALQSIGSAER 399 (457)
Q Consensus 368 ~~~~D~vi-------~DPPR~Gl~~~v~~~l~~~~~~~~ 399 (457)
...||.|+ ++|. .-...++.+..+-.+++
T Consensus 114 ~~~fd~v~D~~~~~~l~~~---~R~~~~~~l~~lL~pgG 149 (218)
T PRK13255 114 LADVDAVYDRAALIALPEE---MRERYVQQLAALLPAGC 149 (218)
T ss_pred CCCeeEEEehHhHhhCCHH---HHHHHHHHHHHHcCCCC
Confidence 35677766 2222 12345666666544564
No 172
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.32 E-value=6.4e-06 Score=79.64 Aligned_cols=120 Identities=13% Similarity=0.041 Sum_probs=87.1
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044572 279 QANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHN 357 (457)
Q Consensus 279 Q~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~ 357 (457)
++..... .++..+.... ..++||++|+++|.-++.+|...+ -.+|+.+|.+++..+.|++|++.. +..++|+++.
T Consensus 62 ~~~~~~g-~lL~~l~~~~-~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~a--g~~~~I~~~~ 137 (247)
T PLN02589 62 TTSADEG-QFLNMLLKLI-NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKA--GVAHKIDFRE 137 (247)
T ss_pred ccCHHHH-HHHHHHHHHh-CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHC--CCCCceEEEe
Confidence 3334444 4445555544 467999999999999999986422 358999999999999999999985 3457999999
Q ss_pred ccCCcCcccc------cCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEE
Q 044572 358 ADNSIEPLSW------LVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKS 403 (457)
Q Consensus 358 ~d~~~~~~~~------~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyv 403 (457)
||+.+.+..+ .+.||+||+|=-...... ..+.+..+-.+++++.+
T Consensus 138 G~a~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~-y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 138 GPALPVLDQMIEDGKYHGTFDFIFVDADKDNYIN-YHKRLIDLVKVGGVIGY 188 (247)
T ss_pred ccHHHHHHHHHhccccCCcccEEEecCCHHHhHH-HHHHHHHhcCCCeEEEE
Confidence 9998876553 257999999987555433 44444444457777665
No 173
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.31 E-value=1.1e-05 Score=80.69 Aligned_cols=74 Identities=11% Similarity=0.055 Sum_probs=59.8
Q ss_pred CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV 376 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~ 376 (457)
.++.+|||+|||+|.+++.+++.....+|+++|. +.+++.+++|++.. +..++++++.+|+++.. + ..+|+|++
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--gl~~rv~~~~~d~~~~~--~-~~~D~v~~ 221 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEK--GVADRMRGIAVDIYKES--Y-PEADAVLF 221 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhC--CccceEEEEecCccCCC--C-CCCCEEEe
Confidence 3578999999999999999998765568999997 79999999999874 34568999999987532 1 34688765
No 174
>PRK06202 hypothetical protein; Provisional
Probab=98.31 E-value=2e-06 Score=82.41 Aligned_cols=75 Identities=13% Similarity=0.061 Sum_probs=55.0
Q ss_pred CCCeEEEEcccccHHHHHHHhhC---C-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccE
Q 044572 298 YGASVTDLYAGAGVIGLSLAAAR---K-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDV 373 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~---~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~ 373 (457)
++.+|||+|||+|.++..++... + ..+|+|||++++|++.|+++... .++++..+++..... ..+.||+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~------~~~~~~~~~~~~l~~-~~~~fD~ 132 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR------PGVTFRQAVSDELVA-EGERFDV 132 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc------CCCeEEEEecccccc-cCCCccE
Confidence 56799999999999999988531 2 24899999999999999887543 235666666544322 2357999
Q ss_pred EEECCC
Q 044572 374 LVVDPP 379 (457)
Q Consensus 374 vi~DPP 379 (457)
|++.--
T Consensus 133 V~~~~~ 138 (232)
T PRK06202 133 VTSNHF 138 (232)
T ss_pred EEECCe
Confidence 988643
No 175
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.30 E-value=1.7e-06 Score=85.95 Aligned_cols=74 Identities=20% Similarity=0.190 Sum_probs=61.8
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV 376 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~ 376 (457)
.+++|||+|||+|.+++..|+ +|+++|+|||-+.-| +.|++.++.| +..+.|++++|.+++.... .++.|+||.
T Consensus 60 ~dK~VlDVGcGtGILS~F~ak-AGA~~V~aVe~S~ia-~~a~~iv~~N--~~~~ii~vi~gkvEdi~LP-~eKVDiIvS 133 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAK-AGARKVYAVEASSIA-DFARKIVKDN--GLEDVITVIKGKVEDIELP-VEKVDIIVS 133 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHH-hCcceEEEEechHHH-HHHHHHHHhc--CccceEEEeecceEEEecC-ccceeEEee
Confidence 589999999999999999997 679999999998877 8899888874 4455699999999886322 367888876
No 176
>PRK04148 hypothetical protein; Provisional
Probab=98.30 E-value=1.2e-05 Score=70.08 Aligned_cols=71 Identities=17% Similarity=0.184 Sum_probs=56.4
Q ss_pred CCCeEEEEcccccH-HHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE-
Q 044572 298 YGASVTDLYAGAGV-IGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV- 375 (457)
Q Consensus 298 ~~~~vLDl~cG~G~-~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi- 375 (457)
++.++||+|||+|. ++..|++.+ ..|+|+|+++.+++.|+++. ++++.+|+++--..+-..+|+|.
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G--~~ViaIDi~~~aV~~a~~~~----------~~~v~dDlf~p~~~~y~~a~liys 83 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESG--FDVIVIDINEKAVEKAKKLG----------LNAFVDDLFNPNLEIYKNAKLIYS 83 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCC--CEEEEEECCHHHHHHHHHhC----------CeEEECcCCCCCHHHHhcCCEEEE
Confidence 46789999999996 999999753 49999999999998887641 47899999886555556788775
Q ss_pred ECCCC
Q 044572 376 VDPPR 380 (457)
Q Consensus 376 ~DPPR 380 (457)
+-||+
T Consensus 84 irpp~ 88 (134)
T PRK04148 84 IRPPR 88 (134)
T ss_pred eCCCH
Confidence 46664
No 177
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.28 E-value=5.7e-06 Score=77.30 Aligned_cols=120 Identities=15% Similarity=0.137 Sum_probs=86.0
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc--CCccEEEE
Q 044572 299 GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL--VGSDVLVV 376 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~--~~~D~vi~ 376 (457)
...+||+|||.|.+.+.+|....-..++|||+....+..|.+.+... +..|+.++++|+...+.... +..|.|.+
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~---~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i 94 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKR---GLKNVRFLRGDARELLRRLFPPGSVDRIYI 94 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHH---TTSSEEEEES-CTTHHHHHSTTTSEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhh---cccceEEEEccHHHHHhhcccCCchheEEE
Confidence 44899999999999999999877788999999999999999888773 45899999999988654432 45776655
Q ss_pred ---CC-C------CCCccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHh
Q 044572 377 ---DP-P------RKGLDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEA 426 (457)
Q Consensus 377 ---DP-P------R~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~ 426 (457)
|| | |.=+.++.++.+...-.+++.+++. .+.....+...+.+...
T Consensus 95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~-----TD~~~y~~~~~~~~~~~ 149 (195)
T PF02390_consen 95 NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFA-----TDVEEYAEWMLEQFEES 149 (195)
T ss_dssp ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEE-----ES-HHHHHHHHHHHHHH
T ss_pred eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEE-----eCCHHHHHHHHHHHHhc
Confidence 66 4 3346677888887755578888886 55555555555555553
No 178
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.28 E-value=2.6e-06 Score=85.29 Aligned_cols=105 Identities=19% Similarity=0.144 Sum_probs=65.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhC-------CCCEEEEEeCCHHHHHHHHHHHhhCCC
Q 044572 275 SSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAAR-------KCRSVKCVEINKESQLSFEKTVSRLPK 347 (457)
Q Consensus 275 ~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~-------~~~~V~gVE~~~~av~~A~~Na~~~~~ 347 (457)
+.||.. ...+..|++.+ . ...+.+|+|.+||+|.|-+.+.... ...+++|+|+++.++..|+.|+-..+
T Consensus 26 G~~~TP-~~i~~l~~~~~-~-~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~- 101 (311)
T PF02384_consen 26 GQFYTP-REIVDLMVKLL-N-PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG- 101 (311)
T ss_dssp GGC----HHHHHHHHHHH-T-T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT-
T ss_pred ceeehH-HHHHHHHHhhh-h-ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc-
Confidence 455543 55555555544 2 2357789999999999988887631 34589999999999999999986532
Q ss_pred CCCCcEEEEEccCCcCcccc-cCCccEEEECCCCCCc
Q 044572 348 SVDGNISWHNADNSIEPLSW-LVGSDVLVVDPPRKGL 383 (457)
Q Consensus 348 ~~~~nv~~~~~d~~~~~~~~-~~~~D~vi~DPPR~Gl 383 (457)
....+..+..+|........ ...||+||.|||....
T Consensus 102 ~~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~ 138 (311)
T PF02384_consen 102 IDNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSK 138 (311)
T ss_dssp HHCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCE
T ss_pred cccccccccccccccccccccccccccccCCCCcccc
Confidence 11233468888876543222 3579999999996543
No 179
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.27 E-value=3.5e-06 Score=78.17 Aligned_cols=97 Identities=16% Similarity=0.066 Sum_probs=72.4
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD 377 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D 377 (457)
.-.+|.|||||.|.-+-.|+++.....|+|||.|++|++.|++ ++ .+++|..+|+..+-.. ...|+++.|
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~---rl-----p~~~f~~aDl~~w~p~--~~~dllfaN 99 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQ---RL-----PDATFEEADLRTWKPE--QPTDLLFAN 99 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHH---hC-----CCCceecccHhhcCCC--Cccchhhhh
Confidence 4578999999999999999999888999999999999998854 32 4689999998775432 367888776
Q ss_pred CCCC--CccHHHHHHHHhcCCCCcEEEEe
Q 044572 378 PPRK--GLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 378 PPR~--Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
---. --+.+++..+...-.+++.+.|-
T Consensus 100 AvlqWlpdH~~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 100 AVLQWLPDHPELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred hhhhhccccHHHHHHHHHhhCCCceEEEE
Confidence 4311 11345555555444588888885
No 180
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.27 E-value=3.5e-06 Score=90.56 Aligned_cols=105 Identities=16% Similarity=0.144 Sum_probs=72.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCC-----CCCeEEEEcccccHHHHHHHhhCC--------CCEEEEEeCCHHHHHHHHHH
Q 044572 275 SSFGQANTRAFDILLRKLQKYVP-----YGASVTDLYAGAGVIGLSLAAARK--------CRSVKCVEINKESQLSFEKT 341 (457)
Q Consensus 275 ~~FfQ~n~~~~~~l~~~i~~~~~-----~~~~vLDl~cG~G~~sl~lA~~~~--------~~~V~gVE~~~~av~~A~~N 341 (457)
+.||. ....++.|++.+..... ...+|||.+||+|.|.+.++.... ...++|+|+++.++..|+.|
T Consensus 4 GqfyT-P~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~ 82 (524)
T TIGR02987 4 GTFFT-PPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL 82 (524)
T ss_pred cccCC-cHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence 34554 46778888887755322 345899999999999999886431 14789999999999999999
Q ss_pred HhhCCCCCCCcEEEEEccCCcC----cccccCCccEEEECCCCCCc
Q 044572 342 VSRLPKSVDGNISWHNADNSIE----PLSWLVGSDVLVVDPPRKGL 383 (457)
Q Consensus 342 a~~~~~~~~~nv~~~~~d~~~~----~~~~~~~~D~vi~DPPR~Gl 383 (457)
+...+ ...+..+++|.... .....+.||+||.|||+...
T Consensus 83 l~~~~---~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~~~ 125 (524)
T TIGR02987 83 LGEFA---LLEINVINFNSLSYVLLNIESYLDLFDIVITNPPYGRL 125 (524)
T ss_pred HhhcC---CCCceeeecccccccccccccccCcccEEEeCCCcccc
Confidence 87642 11234455543321 11123579999999998654
No 181
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.27 E-value=2e-06 Score=78.00 Aligned_cols=69 Identities=22% Similarity=0.225 Sum_probs=57.8
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572 299 GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV 375 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi 375 (457)
.+.+.|||+|+|.++..+|.. +.+|++||.+|.-.+.|++|+.. ++..|++.+.+|+.+.-. ...|+|+
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v---~g~~n~evv~gDA~~y~f---e~ADvvi 101 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHV---PGDVNWEVVVGDARDYDF---ENADVVI 101 (252)
T ss_pred hhceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCC---CCCcceEEEecccccccc---cccceeH
Confidence 378999999999999999975 67999999999999999999876 456799999999987543 3445554
No 182
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.23 E-value=2e-05 Score=74.21 Aligned_cols=99 Identities=17% Similarity=0.142 Sum_probs=69.6
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKC-RSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV 376 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~-~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~ 376 (457)
++.+|||+|||+|.++..+++..+. .+++++|+++.+++.++++... ..+++++.+|+.+.... .+.||+|++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~-----~~~i~~~~~d~~~~~~~-~~~~D~i~~ 112 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL-----PLNIEFIQADAEALPFE-DNSFDAVTI 112 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc-----CCCceEEecchhcCCCC-CCcEEEEEE
Confidence 5789999999999999999976432 4899999999999999988641 24789999999875422 357998876
Q ss_pred CCC---CCCccHHHHHHHHhcCCCCcEEEE
Q 044572 377 DPP---RKGLDSSLVHALQSIGSAERKAKS 403 (457)
Q Consensus 377 DPP---R~Gl~~~v~~~l~~~~~~~~ivyv 403 (457)
.=- ... ...+++.+.....+++.+++
T Consensus 113 ~~~~~~~~~-~~~~l~~~~~~L~~gG~l~~ 141 (223)
T TIGR01934 113 AFGLRNVTD-IQKALREMYRVLKPGGRLVI 141 (223)
T ss_pred eeeeCCccc-HHHHHHHHHHHcCCCcEEEE
Confidence 210 001 12455555554445555555
No 183
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.20 E-value=3.1e-07 Score=75.71 Aligned_cols=72 Identities=15% Similarity=0.005 Sum_probs=44.9
Q ss_pred EEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc-CCccEEEEC
Q 044572 303 TDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL-VGSDVLVVD 377 (457)
Q Consensus 303 LDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~-~~~D~vi~D 377 (457)
||+|||+|.++..++......+++|+|+|+.|++.|++...... ..+...+..+..+...... +.||+|++-
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~fD~V~~~ 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG---NDNFERLRFDVLDLFDYDPPESFDLVVAS 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT------EEEEE--SSS---CCC----SEEEEE
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---CcceeEEEeecCChhhcccccccceehhh
Confidence 79999999999999987555699999999999988888777632 2344555555444332222 489988763
No 184
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.19 E-value=5e-06 Score=81.53 Aligned_cols=76 Identities=20% Similarity=0.193 Sum_probs=64.1
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD 377 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D 377 (457)
.++.|||+|||+|.++..+|. +|+++|++||.|. |.+.|++-++. |+..++|..|.|.+++.. +.++.|++|..
T Consensus 177 ~~kiVlDVGaGSGILS~FAaq-AGA~~vYAvEAS~-MAqyA~~Lv~~--N~~~~rItVI~GKiEdie--LPEk~DviISE 250 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQ-AGAKKVYAVEASE-MAQYARKLVAS--NNLADRITVIPGKIEDIE--LPEKVDVIISE 250 (517)
T ss_pred CCcEEEEecCCccHHHHHHHH-hCcceEEEEehhH-HHHHHHHHHhc--CCccceEEEccCcccccc--CchhccEEEec
Confidence 578899999999999999987 6899999999875 66788887766 367789999999998753 34689999999
Q ss_pred CC
Q 044572 378 PP 379 (457)
Q Consensus 378 PP 379 (457)
|-
T Consensus 251 PM 252 (517)
T KOG1500|consen 251 PM 252 (517)
T ss_pred cc
Confidence 96
No 185
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=98.14 E-value=4e-06 Score=84.70 Aligned_cols=130 Identities=18% Similarity=0.164 Sum_probs=94.8
Q ss_pred CceeEEEEEEeecCCCCcccCCeEEEeeccCeEEE--eeeeEEEEECCCCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEc
Q 044572 229 EHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWE--NVGGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLY 306 (457)
Q Consensus 229 ~~~i~si~~~~~~~~~~~~~~~~~~~l~G~~~~~~--~~~g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~ 306 (457)
.+.+..+..-++. .++.-...+.+.|.|+..+.. +.+|.+|.++.+.-|...+-..+. +.+..+.+.|+.|-|+|
T Consensus 181 ~n~~ktvv~K~~~-Itn~yR~~~~eviAGe~n~vtevre~~~~Fk~DfskVYWnsRL~~Eh--erlsg~fk~gevv~D~F 257 (495)
T KOG2078|consen 181 NNLIKTVVNKIGR-ITNRYRNFKLEVIAGERNLVTEVREGGERFKFDFSKVYWNSRLSHEH--ERLSGLFKPGEVVCDVF 257 (495)
T ss_pred CCCceEeeecccc-hhhhhcccCceEecCCCceEEEEecCCeeEEEecceEEeeccchhHH--HHHhhccCCcchhhhhh
Confidence 3455655433332 222333456788999875442 568999999987777765555554 45555667899999999
Q ss_pred ccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc
Q 044572 307 AGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP 364 (457)
Q Consensus 307 cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~ 364 (457)
||+|-|+++++... ..|++-|.++++++..+.|+..|. -...+++.+..|+.+++
T Consensus 258 aGvGPfa~Pa~kK~--crV~aNDLNpesik~Lk~ni~lNk-v~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 258 AGVGPFALPAAKKG--CRVYANDLNPESIKWLKANIKLNK-VDPSAIEIFNMDAKDFL 312 (495)
T ss_pred cCcCccccchhhcC--cEEEecCCCHHHHHHHHHhccccc-cchhheeeecccHHHHh
Confidence 99999999999754 489999999999999999998742 12235899999988766
No 186
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.09 E-value=3e-05 Score=74.38 Aligned_cols=115 Identities=21% Similarity=0.203 Sum_probs=85.7
Q ss_pred eeEEEEECCCCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhC
Q 044572 266 GGIDISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRL 345 (457)
Q Consensus 266 ~g~~~~i~~~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~ 345 (457)
++..|.-+.+-.+.-|......+++.+. +.+++.||++|-|||.++..+... +++|+|+|+++.++...++-.+..
T Consensus 28 ~~~kfnkd~GQHilkNp~v~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gt 103 (315)
T KOG0820|consen 28 GGSKFNKDFGQHILKNPLVIDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGT 103 (315)
T ss_pred cCcccccccchhhhcCHHHHHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCC
Confidence 3556666666666677766666555422 357899999999999999999975 469999999999999888776543
Q ss_pred CCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCCccHHHHH
Q 044572 346 PKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVH 389 (457)
Q Consensus 346 ~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~ 389 (457)
. .....+++.||..+.. ...||++|.|-|+.--++-+.+
T Consensus 104 p--~~~kLqV~~gD~lK~d---~P~fd~cVsNlPyqISSp~vfK 142 (315)
T KOG0820|consen 104 P--KSGKLQVLHGDFLKTD---LPRFDGCVSNLPYQISSPLVFK 142 (315)
T ss_pred C--ccceeeEEecccccCC---CcccceeeccCCccccCHHHHH
Confidence 2 2357899999987642 3579999999998766654433
No 187
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=98.06 E-value=1.3e-05 Score=79.01 Aligned_cols=70 Identities=24% Similarity=0.252 Sum_probs=55.6
Q ss_pred eEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc-cCCccEEEECCC
Q 044572 301 SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW-LVGSDVLVVDPP 379 (457)
Q Consensus 301 ~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~-~~~~D~vi~DPP 379 (457)
+++|||||.|.+++.+.. .|+..|.++|+++.|++..++|... ..+++|+.+..... ...+|+++.+||
T Consensus 2 ~v~dLFsG~Gg~~~gl~~-~G~~~v~a~e~~~~a~~~~~~N~~~---------~~~~~Di~~~~~~~~~~~~D~l~~gpP 71 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEK-AGFEIVAANEIDKSAAETYEANFPN---------KLIEGDITKIDEKDFIPDIDLLTGGFP 71 (275)
T ss_pred cEEEEccCcchHHHHHHH-cCCEEEEEEeCCHHHHHHHHHhCCC---------CCccCccccCchhhcCCCCCEEEeCCC
Confidence 689999999999888876 5688899999999999999888642 14567776654322 357999999999
Q ss_pred C
Q 044572 380 R 380 (457)
Q Consensus 380 R 380 (457)
-
T Consensus 72 C 72 (275)
T cd00315 72 C 72 (275)
T ss_pred C
Confidence 3
No 188
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.03 E-value=2.9e-05 Score=81.43 Aligned_cols=98 Identities=18% Similarity=0.150 Sum_probs=65.3
Q ss_pred CCeEEEEcccccHHHHHHHhh----CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEE
Q 044572 299 GASVTDLYAGAGVIGLSLAAA----RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVL 374 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~----~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~v 374 (457)
+..|+|+|||+|.++..+++. +++.+|+|||.|+.|+..+++-++.+ +..++|+++++|+.++-. ..+.|+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n--~w~~~V~vi~~d~r~v~l--pekvDII 262 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNAN--GWGDKVTVIHGDMREVEL--PEKVDII 262 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHT--TTTTTEEEEES-TTTSCH--SS-EEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhc--CCCCeEEEEeCcccCCCC--CCceeEE
Confidence 467999999999998776653 23579999999999998877655553 345789999999988643 3589999
Q ss_pred EECCC-CC---CccHHHHHHHHhcCCCCcE
Q 044572 375 VVDPP-RK---GLDSSLVHALQSIGSAERK 400 (457)
Q Consensus 375 i~DPP-R~---Gl~~~v~~~l~~~~~~~~i 400 (457)
|.-.= .. .+.++++.+..+...++++
T Consensus 263 VSElLGsfg~nEl~pE~Lda~~rfLkp~Gi 292 (448)
T PF05185_consen 263 VSELLGSFGDNELSPECLDAADRFLKPDGI 292 (448)
T ss_dssp EE---BTTBTTTSHHHHHHHGGGGEEEEEE
T ss_pred EEeccCCccccccCHHHHHHHHhhcCCCCE
Confidence 98765 22 3455666666554334444
No 189
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.02 E-value=4e-05 Score=74.98 Aligned_cols=103 Identities=18% Similarity=0.219 Sum_probs=75.9
Q ss_pred CHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccC
Q 044572 281 NTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADN 360 (457)
Q Consensus 281 n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~ 360 (457)
|...++.+++.+. +.++..|||+|.|.|.+|..++... ++|++||+++..++..++.... ..|++++.+|+
T Consensus 15 ~~~~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~-----~~~~~vi~~D~ 85 (262)
T PF00398_consen 15 DPNIADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFAS-----NPNVEVINGDF 85 (262)
T ss_dssp HHHHHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTT-----CSSEEEEES-T
T ss_pred CHHHHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhh-----cccceeeecch
Confidence 4445555444332 1368999999999999999999874 6999999999999999876542 36899999999
Q ss_pred CcCcccc--cCCccEEEECCCCCCccHHHHHHHHh
Q 044572 361 SIEPLSW--LVGSDVLVVDPPRKGLDSSLVHALQS 393 (457)
Q Consensus 361 ~~~~~~~--~~~~D~vi~DPPR~Gl~~~v~~~l~~ 393 (457)
.++.... ......||.+.|+ .++..++..+..
T Consensus 86 l~~~~~~~~~~~~~~vv~NlPy-~is~~il~~ll~ 119 (262)
T PF00398_consen 86 LKWDLYDLLKNQPLLVVGNLPY-NISSPILRKLLE 119 (262)
T ss_dssp TTSCGGGHCSSSEEEEEEEETG-TGHHHHHHHHHH
T ss_pred hccccHHhhcCCceEEEEEecc-cchHHHHHHHhh
Confidence 8754321 1345699999998 556666666665
No 190
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=4.9e-05 Score=70.35 Aligned_cols=114 Identities=18% Similarity=0.124 Sum_probs=78.6
Q ss_pred HHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEE--EEEeCCHHHHHHHHHHHhhCCCC-------CCCcEEEE
Q 044572 286 DILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSV--KCVEINKESQLSFEKTVSRLPKS-------VDGNISWH 356 (457)
Q Consensus 286 ~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V--~gVE~~~~av~~A~~Na~~~~~~-------~~~nv~~~ 356 (457)
..+++.+...+.+|.+.||+|+|||.++-.+|...++.-. +|||.-++.|+.+++|++..-.+ ...+..++
T Consensus 70 a~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~iv 149 (237)
T KOG1661|consen 70 ATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIV 149 (237)
T ss_pred HHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEE
Confidence 3344444444568999999999999999999976654333 99999999999999998753110 12367788
Q ss_pred EccCCcCcccccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEE
Q 044572 357 NADNSIEPLSWLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKS 403 (457)
Q Consensus 357 ~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyv 403 (457)
.||....... ..+||.|.+----..+..++++ .++++++++.-
T Consensus 150 vGDgr~g~~e-~a~YDaIhvGAaa~~~pq~l~d---qL~~gGrllip 192 (237)
T KOG1661|consen 150 VGDGRKGYAE-QAPYDAIHVGAAASELPQELLD---QLKPGGRLLIP 192 (237)
T ss_pred eCCccccCCc-cCCcceEEEccCccccHHHHHH---hhccCCeEEEe
Confidence 8888654332 3579999997444444444444 44556666655
No 191
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.02 E-value=1.7e-05 Score=70.54 Aligned_cols=102 Identities=20% Similarity=0.145 Sum_probs=64.5
Q ss_pred HHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccc
Q 044572 287 ILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS 366 (457)
Q Consensus 287 ~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~ 366 (457)
.++..+.....++.+|||+|||+|.++..++.. +. +|+|+|+++.+++. . ++.....+.... ..
T Consensus 11 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~-~~~g~D~~~~~~~~------~-------~~~~~~~~~~~~-~~ 74 (161)
T PF13489_consen 11 DLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR-GF-EVTGVDISPQMIEK------R-------NVVFDNFDAQDP-PF 74 (161)
T ss_dssp HHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT-TS-EEEEEESSHHHHHH------T-------TSEEEEEECHTH-HC
T ss_pred HHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh-CC-EEEEEECCHHHHhh------h-------hhhhhhhhhhhh-hc
Confidence 334444443457899999999999999999875 44 99999999999987 1 112222222111 11
Q ss_pred ccCCccEEEECCCCCCc--cHHHHHHHHhcCCCCcEEEEe
Q 044572 367 WLVGSDVLVVDPPRKGL--DSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 367 ~~~~~D~vi~DPPR~Gl--~~~v~~~l~~~~~~~~ivyvs 404 (457)
..+.||+|++.==-.-+ ...+++.+.++-.+++.++++
T Consensus 75 ~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~ 114 (161)
T PF13489_consen 75 PDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVIS 114 (161)
T ss_dssp HSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEE
T ss_pred cccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEE
Confidence 23679999874110000 135677777665577777776
No 192
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.84 E-value=0.00012 Score=71.00 Aligned_cols=109 Identities=17% Similarity=0.066 Sum_probs=80.2
Q ss_pred CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCC-CCCCcEEEEEccCCcCcccccC-CccE
Q 044572 296 VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPK-SVDGNISWHNADNSIEPLSWLV-GSDV 373 (457)
Q Consensus 296 ~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~-~~~~nv~~~~~d~~~~~~~~~~-~~D~ 373 (457)
.+..++||=+|.|.|...-.+.+....++|+.||+++..++.|++-...... ....+++++.+|+..++.+... +||+
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv 153 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV 153 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence 3457899999999999999998765467999999999999999986543111 1246899999999888776656 8999
Q ss_pred EEECCCCC-C-----ccHHHHHHHHhcCCCCcEEEEe
Q 044572 374 LVVDPPRK-G-----LDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 374 vi~DPPR~-G-----l~~~v~~~l~~~~~~~~ivyvs 404 (457)
||+|.+-. + .+.+..+.+.+.-.+++++.+-
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~ 190 (246)
T PF01564_consen 154 IIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQ 190 (246)
T ss_dssp EEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEE
Confidence 99998752 1 2457777777655577777765
No 193
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.84 E-value=6.7e-05 Score=70.56 Aligned_cols=112 Identities=17% Similarity=0.120 Sum_probs=63.2
Q ss_pred CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh-------CCCCCCCcEEEEEccCCcCc--ccc
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR-------LPKSVDGNISWHNADNSIEP--LSW 367 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~-------~~~~~~~nv~~~~~d~~~~~--~~~ 367 (457)
.+++.++|||||.|..-+.+|...++++++|||+.+...+.|+.+.+. .+. ....+++.++|..+.. ..+
T Consensus 41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~-~~~~v~l~~gdfl~~~~~~~~ 119 (205)
T PF08123_consen 41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGK-RPGKVELIHGDFLDPDFVKDI 119 (205)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB----EEEEECS-TTTHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhc-ccccceeeccCccccHhHhhh
Confidence 478999999999999999888878899999999999999888765432 111 1357888999976531 122
Q ss_pred cCCccEEEECCCCCC--ccHHHHHHHHhcCCCCcEEEEeccCCCCCc
Q 044572 368 LVGSDVLVVDPPRKG--LDSSLVHALQSIGSAERKAKSLSESSSSMV 412 (457)
Q Consensus 368 ~~~~D~vi~DPPR~G--l~~~v~~~l~~~~~~~~ivyvs~~~~~c~~ 412 (457)
....|+|++|-=-.+ +...+.+.+..++ ++..| || ..+.|..
T Consensus 120 ~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk-~G~~I-Is-~~~~~~~ 163 (205)
T PF08123_consen 120 WSDADVVFVNNTCFDPDLNLALAELLLELK-PGARI-IS-TKPFCPR 163 (205)
T ss_dssp GHC-SEEEE--TTT-HHHHHHHHHHHTTS--TT-EE-EE-SS-SS-T
T ss_pred hcCCCEEEEeccccCHHHHHHHHHHHhcCC-CCCEE-EE-CCCcCCC
Confidence 346799999754332 2223444444554 44443 33 3455543
No 194
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.83 E-value=9.3e-05 Score=70.55 Aligned_cols=102 Identities=13% Similarity=0.003 Sum_probs=67.3
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhC-------C--CCCCCcEEEEEccCCcCcc--c
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRL-------P--KSVDGNISWHNADNSIEPL--S 366 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~-------~--~~~~~nv~~~~~d~~~~~~--~ 366 (457)
++.+||+.+||.|--.+.||..+- +|+|||+|+.||+.+.+..... . .....+++++++|.+++.. .
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~--~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGV--KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCC--cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 578999999999999999998643 7999999999999986521100 0 0012478999999998642 3
Q ss_pred ccCCccEEE-------ECCCCCCccHHHHHHHHh-cCCCCcEEEEe
Q 044572 367 WLVGSDVLV-------VDPPRKGLDSSLVHALQS-IGSAERKAKSL 404 (457)
Q Consensus 367 ~~~~~D~vi-------~DPPR~Gl~~~v~~~l~~-~~~~~~ivyvs 404 (457)
+.+.||.|+ ++|.. -..-.+.+.. +++.+.++.++
T Consensus 121 ~~~~fD~VyDra~~~Alpp~~---R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALPNDL---RTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred ccCCcCeeeeehhHhcCCHHH---HHHHHHHHHHHhCCCcEEEEEE
Confidence 345688753 23321 1234444444 44456666665
No 195
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.80 E-value=0.00027 Score=67.51 Aligned_cols=102 Identities=15% Similarity=0.079 Sum_probs=80.6
Q ss_pred CeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc--CCccEEEE-
Q 044572 300 ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL--VGSDVLVV- 376 (457)
Q Consensus 300 ~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~--~~~D~vi~- 376 (457)
..+||+|||.|.+.+.+|....-.-++|||+....+..|.+.+... ...|+.++++||...+..+. +..|-|.+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~---~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~ 126 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKEL---GLKNLRLLCGDAVEVLDYLIPDGSLDKIYIN 126 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHc---CCCcEEEEcCCHHHHHHhcCCCCCeeEEEEE
Confidence 5899999999999999999876678999999999999999888874 33499999999987665443 25665555
Q ss_pred --CC-C------CCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 377 --DP-P------RKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 377 --DP-P------R~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
|| | |.-+.+..++.+...-.+++.+++.
T Consensus 127 FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 127 FPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 55 3 3456677888887766688888886
No 196
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.79 E-value=7.6e-05 Score=65.54 Aligned_cols=59 Identities=22% Similarity=0.047 Sum_probs=49.4
Q ss_pred eEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCc
Q 044572 301 SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSI 362 (457)
Q Consensus 301 ~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~ 362 (457)
++||+|||.|.+++.++......+|+++|.++.+++.+++|++.+ ...++++++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n---~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLN---NLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHc---CCCcEEEEEeeeeC
Confidence 489999999999999998654348999999999999999999873 33568888877654
No 197
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.76 E-value=0.00014 Score=71.42 Aligned_cols=74 Identities=20% Similarity=0.144 Sum_probs=52.4
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV 376 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~ 376 (457)
.|++|||+|||.|.++..++. .|++.|+|||-+...+..++.-.+..+ ....+.++-.-+++.. . .+.||+|+.
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~-~GA~~ViGiDP~~lf~~QF~~i~~~lg--~~~~~~~lplgvE~Lp-~-~~~FDtVF~ 188 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLG-RGAKSVIGIDPSPLFYLQFEAIKHFLG--QDPPVFELPLGVEDLP-N-LGAFDTVFS 188 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhh-cCCCEEEEECCChHHHHHHHHHHHHhC--CCccEEEcCcchhhcc-c-cCCcCEEEE
Confidence 689999999999999999997 578999999999988877654333321 1123333323344433 2 468999986
No 198
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.75 E-value=0.00033 Score=61.91 Aligned_cols=104 Identities=19% Similarity=0.135 Sum_probs=67.3
Q ss_pred CCCeEEEEcccccHHHHHHHh-----hCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCcc
Q 044572 298 YGASVTDLYAGAGVIGLSLAA-----ARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSD 372 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~-----~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D 372 (457)
+...|+|+|||-|.+|..+|. . ..-+|+|||.++..++.|++.++........+.++..++..+... ....+
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 101 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS--SDPPD 101 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc--cCCCe
Confidence 467899999999999999997 3 345899999999999999988877432223556666665543211 12223
Q ss_pred EEEECCCCCCccHHHHHHHHhcCCCCcEEEEec
Q 044572 373 VLVVDPPRKGLDSSLVHALQSIGSAERKAKSLS 405 (457)
Q Consensus 373 ~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~ 405 (457)
+++-==.=..+++.+++...+ .....++.+.|
T Consensus 102 ~~vgLHaCG~Ls~~~l~~~~~-~~~~~l~~vpC 133 (141)
T PF13679_consen 102 ILVGLHACGDLSDRALRLFIR-PNARFLVLVPC 133 (141)
T ss_pred EEEEeecccchHHHHHHHHHH-cCCCEEEEcCC
Confidence 332100112355567776666 44666666663
No 199
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.73 E-value=0.00038 Score=66.59 Aligned_cols=54 Identities=15% Similarity=0.141 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhh-C-CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHH
Q 044572 283 RAFDILLRKLQKY-V-PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS 337 (457)
Q Consensus 283 ~~~~~l~~~i~~~-~-~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~ 337 (457)
....+|...+..+ + .++.+|||+|||+|.|+..+++. |+++|+|||+++.++..
T Consensus 58 r~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 58 RGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred hhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHH
Confidence 3444544443332 1 26789999999999999999985 67899999999987765
No 200
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.72 E-value=0.00015 Score=66.47 Aligned_cols=95 Identities=18% Similarity=0.135 Sum_probs=71.6
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE-
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV- 376 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~- 376 (457)
.|++|||+|+|+|.-++..|+ .|++.|++.|+++.++..++.|++.|+ .++.+...|... ....+|++++
T Consensus 79 rgkrVLd~gagsgLvaIAaa~-aGA~~v~a~d~~P~~~~ai~lNa~ang----v~i~~~~~d~~g----~~~~~Dl~Lag 149 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAAR-AGAAEVVAADIDPWLEQAIRLNAAANG----VSILFTHADLIG----SPPAFDLLLAG 149 (218)
T ss_pred ccceeeecccccChHHHHHHH-hhhHHHHhcCCChHHHHHhhcchhhcc----ceeEEeeccccC----CCcceeEEEee
Confidence 589999999999999999987 678999999999999999999998742 468888877643 1246787654
Q ss_pred ----CCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 377 ----DPPRKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 377 ----DPPR~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
|.+ ....++..+..+...+..|.|.
T Consensus 150 Dlfy~~~---~a~~l~~~~~~l~~~g~~vlvg 178 (218)
T COG3897 150 DLFYNHT---EADRLIPWKDRLAEAGAAVLVG 178 (218)
T ss_pred ceecCch---HHHHHHHHHHHHHhCCCEEEEe
Confidence 443 2345666666665455555564
No 201
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.71 E-value=0.00035 Score=65.77 Aligned_cols=87 Identities=17% Similarity=0.238 Sum_probs=65.4
Q ss_pred EEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCC
Q 044572 302 VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRK 381 (457)
Q Consensus 302 vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~ 381 (457)
|+|+||--|.+++.|.+...+.+|+++|+++..++.|++|++.. +..+++++..+|-.+.+.. .+..|+||+ +
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~--~l~~~i~~rlgdGL~~l~~-~e~~d~ivI----A 73 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKY--GLEDRIEVRLGDGLEVLKP-GEDVDTIVI----A 73 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT--T-TTTEEEEE-SGGGG--G-GG---EEEE----E
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc--CCcccEEEEECCcccccCC-CCCCCEEEE----e
Confidence 68999999999999999877889999999999999999999985 4467899999997765432 123688887 8
Q ss_pred CccHHHHHHHHhcC
Q 044572 382 GLDSSLVHALQSIG 395 (457)
Q Consensus 382 Gl~~~v~~~l~~~~ 395 (457)
|+...++..+....
T Consensus 74 GMGG~lI~~ILe~~ 87 (205)
T PF04816_consen 74 GMGGELIIEILEAG 87 (205)
T ss_dssp EE-HHHHHHHHHHT
T ss_pred cCCHHHHHHHHHhh
Confidence 98887776666543
No 202
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.70 E-value=5.9e-05 Score=71.70 Aligned_cols=77 Identities=18% Similarity=0.016 Sum_probs=54.9
Q ss_pred CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH-HHh-hC--CCC-----CCCcEEEEEccCCcCcccc
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK-TVS-RL--PKS-----VDGNISWHNADNSIEPLSW 367 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~-Na~-~~--~~~-----~~~nv~~~~~d~~~~~~~~ 367 (457)
..+.+||+.+||.|.-.+.||..+ -+|+|||+|+.|++.|.+ |.. .. ... ...+|+++++|.+++....
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G--~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQG--HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTT--EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCCeEEEeCCCChHHHHHHHHCC--CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 457799999999999999999864 389999999999999843 221 00 000 1246899999999865444
Q ss_pred cCCccEEE
Q 044572 368 LVGSDVLV 375 (457)
Q Consensus 368 ~~~~D~vi 375 (457)
.++||+|+
T Consensus 114 ~g~fD~iy 121 (218)
T PF05724_consen 114 VGKFDLIY 121 (218)
T ss_dssp HHSEEEEE
T ss_pred cCCceEEE
Confidence 45788875
No 203
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.69 E-value=1.4e-05 Score=74.75 Aligned_cols=99 Identities=15% Similarity=0.090 Sum_probs=64.9
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccc-ccCCccEEEEC
Q 044572 299 GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS-WLVGSDVLVVD 377 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~-~~~~~D~vi~D 377 (457)
=+++||||||||.+|..+-.+ +.+.+|||+|..|++.|.+. +.-+ +..++|+..++.. ...+||+|+.-
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eK------g~YD--~L~~Aea~~Fl~~~~~er~DLi~Aa 195 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEK------GLYD--TLYVAEAVLFLEDLTQERFDLIVAA 195 (287)
T ss_pred cceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhc------cchH--HHHHHHHHHHhhhccCCcccchhhh
Confidence 378999999999999999876 56999999999999888753 1111 3445565554431 23578887542
Q ss_pred C--CCCCccHHHHHHHHhcCCCCcEEEEeccC
Q 044572 378 P--PRKGLDSSLVHALQSIGSAERKAKSLSES 407 (457)
Q Consensus 378 P--PR~Gl~~~v~~~l~~~~~~~~ivyvs~~~ 407 (457)
- |+-|--..+.-....+-.+++++..|++.
T Consensus 196 DVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~ 227 (287)
T COG4976 196 DVLPYLGALEGLFAGAAGLLAPGGLFAFSVET 227 (287)
T ss_pred hHHHhhcchhhHHHHHHHhcCCCceEEEEecc
Confidence 1 56664444554444443466666665443
No 204
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.69 E-value=0.00072 Score=64.45 Aligned_cols=114 Identities=18% Similarity=0.146 Sum_probs=65.3
Q ss_pred CCCeEEEEccccc-HHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccc-ccCCccEEE
Q 044572 298 YGASVTDLYAGAG-VIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS-WLVGSDVLV 375 (457)
Q Consensus 298 ~~~~vLDl~cG~G-~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~-~~~~~D~vi 375 (457)
.|++||=+ |-. .+|+++|.....++|+.+|+++..++..++.++..+ . +++.+..|+..-++. +.++||+++
T Consensus 44 ~gk~il~l--GDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~g---l-~i~~~~~DlR~~LP~~~~~~fD~f~ 117 (243)
T PF01861_consen 44 EGKRILFL--GDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEG---L-PIEAVHYDLRDPLPEELRGKFDVFF 117 (243)
T ss_dssp TT-EEEEE--S-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT------EEEE---TTS---TTTSS-BSEEE
T ss_pred cCCEEEEE--cCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcC---C-ceEEEEecccccCCHHHhcCCCEEE
Confidence 58889844 444 467777766667899999999999999999998843 2 389999999876553 457899999
Q ss_pred ECCCCC--CccHHHHHHHHhcCCCCcEEEEeccCCCCCchh-chhhHHHH
Q 044572 376 VDPPRK--GLDSSLVHALQSIGSAERKAKSLSESSSSMVKE-EKRPWILR 422 (457)
Q Consensus 376 ~DPPR~--Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~-~~~~~~~~ 422 (457)
.|||+. |+.-=+-..+..++..+...|++ ...+. ....|...
T Consensus 118 TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~-----~~~~~~s~~~~~~~ 162 (243)
T PF01861_consen 118 TDPPYTPEGLKLFLSRGIEALKGEGCAGYFG-----FTHKEASPDKWLEV 162 (243)
T ss_dssp E---SSHHHHHHHHHHHHHTB-STT-EEEEE-----E-TTT--HHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHHHhCCCCceEEEE-----EecCcCcHHHHHHH
Confidence 999985 44332344555666566688887 55443 24445443
No 205
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.67 E-value=0.00031 Score=69.40 Aligned_cols=82 Identities=22% Similarity=0.181 Sum_probs=49.6
Q ss_pred CCeEEEEcccccHH-HHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC----cccccCCccE
Q 044572 299 GASVTDLYAGAGVI-GLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE----PLSWLVGSDV 373 (457)
Q Consensus 299 ~~~vLDl~cG~G~~-sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~----~~~~~~~~D~ 373 (457)
.-++||+|+|+-.| .|..++..+ =+++|.|+++.+++.|++|++.|. +..++|+++...-... +....+.||.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~-W~fvaTdID~~sl~~A~~nv~~N~-~L~~~I~l~~~~~~~~i~~~i~~~~e~~df 180 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYG-WSFVATDIDPKSLESARENVERNP-NLESRIELRKQKNPDNIFDGIIQPNERFDF 180 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT--T-TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcC-CeEEEecCCHHHHHHHHHHHHhcc-ccccceEEEEcCCccccchhhhcccceeeE
Confidence 35799999999865 666666544 389999999999999999999852 4567898876543322 2111256999
Q ss_pred EEECCCCCC
Q 044572 374 LVVDPPRKG 382 (457)
Q Consensus 374 vi~DPPR~G 382 (457)
.+.|||-..
T Consensus 181 tmCNPPFy~ 189 (299)
T PF05971_consen 181 TMCNPPFYS 189 (299)
T ss_dssp EEE-----S
T ss_pred EecCCcccc
Confidence 999999543
No 206
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.62 E-value=0.00077 Score=63.55 Aligned_cols=111 Identities=16% Similarity=0.065 Sum_probs=80.0
Q ss_pred HHHHhhCCCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc
Q 044572 290 RKLQKYVPYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL 368 (457)
Q Consensus 290 ~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~ 368 (457)
+.+.+.. ..+++||+|..||.-++..|.... -++|+++|+++++.+.+.+-.+.. +....|+++++++.+.+.++.
T Consensus 66 ~~li~~~-~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~a--gv~~KI~~i~g~a~esLd~l~ 142 (237)
T KOG1663|consen 66 QMLIRLL-NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLA--GVDHKITFIEGPALESLDELL 142 (237)
T ss_pred HHHHHHh-CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhc--cccceeeeeecchhhhHHHHH
Confidence 3344433 478999999988877666665321 359999999999999998877763 456789999999988765542
Q ss_pred -----CCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 369 -----VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 369 -----~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
+.||.+|+|-=..-...-..+.+.-++ +++++.+-
T Consensus 143 ~~~~~~tfDfaFvDadK~nY~~y~e~~l~Llr-~GGvi~~D 182 (237)
T KOG1663|consen 143 ADGESGTFDFAFVDADKDNYSNYYERLLRLLR-VGGVIVVD 182 (237)
T ss_pred hcCCCCceeEEEEccchHHHHHHHHHHHhhcc-cccEEEEe
Confidence 469999999865444443444555554 78887774
No 207
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=0.0007 Score=65.16 Aligned_cols=82 Identities=15% Similarity=0.166 Sum_probs=66.5
Q ss_pred CCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc-cCCccEE
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW-LVGSDVL 374 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~-~~~~D~v 374 (457)
.+|.+|++.|.|+|.++..+|+..+ -.+++..|..+.-.+.|.+-.+.- ...+|++++.-|+-..-... ...+|.|
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~h--gi~~~vt~~hrDVc~~GF~~ks~~aDaV 181 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREH--GIGDNVTVTHRDVCGSGFLIKSLKADAV 181 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHh--CCCcceEEEEeecccCCccccccccceE
Confidence 4899999999999999999998753 269999999998888888877763 35689999999986543222 3569999
Q ss_pred EECCCC
Q 044572 375 VVDPPR 380 (457)
Q Consensus 375 i~DPPR 380 (457)
++|-|.
T Consensus 182 FLDlPa 187 (314)
T KOG2915|consen 182 FLDLPA 187 (314)
T ss_pred EEcCCC
Confidence 999985
No 208
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.61 E-value=0.00056 Score=68.22 Aligned_cols=141 Identities=17% Similarity=0.022 Sum_probs=94.3
Q ss_pred HHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHh--h-CCCC-CCCcEEEEEccCC
Q 044572 286 DILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVS--R-LPKS-VDGNISWHNADNS 361 (457)
Q Consensus 286 ~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~--~-~~~~-~~~nv~~~~~d~~ 361 (457)
|.|+--..+.++..++||=||.|-|.-.-.+.+.-+..+|+-||.+|++++.+++|.. . |.+. .+.+++.+..|++
T Consensus 277 EsLV~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf 356 (508)
T COG4262 277 ESLVYPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAF 356 (508)
T ss_pred heeeecccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHH
Confidence 3333333344455688999999999999999886567899999999999999997732 2 2111 2458999999999
Q ss_pred cCcccccCCccEEEECCCC--C---C--ccHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhc
Q 044572 362 IEPLSWLVGSDVLVVDPPR--K---G--LDSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEAS 427 (457)
Q Consensus 362 ~~~~~~~~~~D~vi~DPPR--~---G--l~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~ 427 (457)
.++....+.||+||+|=|- . | .+.++...+.+.-...+++.+-+.|.-..+..+.+ ....+++++
T Consensus 357 ~wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~-i~aTik~AG 428 (508)
T COG4262 357 QWLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWR-IDATIKSAG 428 (508)
T ss_pred HHHHhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeee-ehhHHHhCc
Confidence 9887666789999998762 1 1 23355555655444677777754444444444433 233344444
No 209
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.58 E-value=0.00024 Score=66.33 Aligned_cols=68 Identities=15% Similarity=0.025 Sum_probs=49.9
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572 299 GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV 376 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~ 376 (457)
..-|||++||||.-+-.+...+ -..+|||||+.|++.|.+ +.. . -.++.+|.-.-+..-.+.||-||.
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~G--h~wiGvDiSpsML~~a~~--~e~--e----gdlil~DMG~GlpfrpGtFDg~IS 118 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDSG--HQWIGVDISPSMLEQAVE--REL--E----GDLILCDMGEGLPFRPGTFDGVIS 118 (270)
T ss_pred CcEEEEeccCCCcchheeccCC--ceEEeecCCHHHHHHHHH--hhh--h----cCeeeeecCCCCCCCCCccceEEE
Confidence 5679999999999998888754 489999999999999986 221 1 156777766544333467886553
No 210
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.55 E-value=0.0015 Score=64.48 Aligned_cols=104 Identities=14% Similarity=0.038 Sum_probs=81.9
Q ss_pred CeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCC-CCcEEEEEccCCcCcccccCCccEEEECC
Q 044572 300 ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSV-DGNISWHNADNSIEPLSWLVGSDVLVVDP 378 (457)
Q Consensus 300 ~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~-~~nv~~~~~d~~~~~~~~~~~~D~vi~DP 378 (457)
++||=+|.|.|..+-.+.+.....+++.||++++.++.+++=........ ..+++.+.+|..+++.....+||+||+|=
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 59999999999999999987667899999999999999998655432111 47899999999988776556899999963
Q ss_pred --CCCCc-----cHHHHHHHHhcCCCCcEEEEe
Q 044572 379 --PRKGL-----DSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 379 --PR~Gl-----~~~v~~~l~~~~~~~~ivyvs 404 (457)
| .|- +.++.+.+.+.-.+++++.+-
T Consensus 158 tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 158 TDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 3 243 557888888766567766664
No 211
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.50 E-value=0.00095 Score=71.38 Aligned_cols=104 Identities=12% Similarity=-0.020 Sum_probs=78.2
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc-CCccEEEE
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL-VGSDVLVV 376 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~-~~~D~vi~ 376 (457)
.+..+||+|||.|.+.+.+|....-.-++|||+....+..|.+.++. .+..|+.++++|+......+. ...|.|++
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~---~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i 423 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGE---QNITNFLLFPNNLDLILNDLPNNSLDGIYI 423 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHH---cCCCeEEEEcCCHHHHHHhcCcccccEEEE
Confidence 46789999999999999999876656799999999999888887765 345789999988753322222 35776665
Q ss_pred ---CC-C------CCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 377 ---DP-P------RKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 377 ---DP-P------R~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
|| | |.=+.+..++.+...-.+++.+++.
T Consensus 424 ~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 424 LFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred ECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 55 3 2345667888887766688888886
No 212
>PHA01634 hypothetical protein
Probab=97.50 E-value=0.00042 Score=59.22 Aligned_cols=74 Identities=15% Similarity=0.111 Sum_probs=56.2
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD 377 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D 377 (457)
.+++|+|+|++.|.-+|.++. .||++|+++|.++...+..++|.+.+ +..+... ..+ ++ ...-+.||+.++|
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l-~GAK~Vva~E~~~kl~k~~een~k~n--nI~DK~v-~~~---eW-~~~Y~~~Di~~iD 99 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLL-RGASFVVQYEKEEKLRKKWEEVCAYF--NICDKAV-MKG---EW-NGEYEDVDIFVMD 99 (156)
T ss_pred cCCEEEEecCCccchhhHHhh-cCccEEEEeccCHHHHHHHHHHhhhh--eeeecee-ecc---cc-cccCCCcceEEEE
Confidence 689999999999999999997 67999999999999999999999873 3333221 111 11 1123578999998
Q ss_pred CC
Q 044572 378 PP 379 (457)
Q Consensus 378 PP 379 (457)
=-
T Consensus 100 Ce 101 (156)
T PHA01634 100 CE 101 (156)
T ss_pred cc
Confidence 64
No 213
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.48 E-value=0.00016 Score=68.49 Aligned_cols=47 Identities=19% Similarity=0.143 Sum_probs=44.0
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR 344 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~ 344 (457)
++..+||+||-+|.+++.+|+..+++.|+||||++..|..|++|++.
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccc
Confidence 56789999999999999999999999999999999999999999763
No 214
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.45 E-value=0.00091 Score=68.01 Aligned_cols=115 Identities=20% Similarity=0.191 Sum_probs=84.7
Q ss_pred CCCCeEEEEcccccHHHHHHHhh-CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccc-ccCCccEE
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAA-RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS-WLVGSDVL 374 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~-~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~-~~~~~D~v 374 (457)
.+|++|||+||--|.=+.++|.. .+-..|+|.|.+..-++..+.|+.+++ .+|....+.|..++... +..+||-|
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG---v~ntiv~n~D~~ef~~~~~~~~fDRV 316 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG---VTNTIVSNYDGREFPEKEFPGSFDRV 316 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC---CCceEEEccCcccccccccCccccee
Confidence 37999999999999977777754 334689999999999999999999853 46777888888765422 23479999
Q ss_pred EECCCCCC--ccH----------------------H-HHHHHHhcCCCCcEEEEeccCCCCCchhchhhH
Q 044572 375 VVDPPRKG--LDS----------------------S-LVHALQSIGSAERKAKSLSESSSSMVKEEKRPW 419 (457)
Q Consensus 375 i~DPPR~G--l~~----------------------~-v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~ 419 (457)
++|-|-+| +.. + +..++...+..+-|||.+ |+.....+.+
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST-----CSI~~~ENE~ 381 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST-----CSITVEENEA 381 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe-----eecchhhhHH
Confidence 99999877 211 1 233444455677788887 8877655443
No 215
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=97.45 E-value=0.00044 Score=69.07 Aligned_cols=91 Identities=22% Similarity=0.257 Sum_probs=64.0
Q ss_pred eEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccC-CccEEEECCC
Q 044572 301 SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLV-GSDVLVVDPP 379 (457)
Q Consensus 301 ~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~-~~D~vi~DPP 379 (457)
+++|||||.|.+++-+.. .|..-|.++|+++.|++.-+.|.. ....+|+.+....... .+|+++.-||
T Consensus 2 ~~~dlFsG~Gg~~~g~~~-ag~~~~~a~e~~~~a~~~y~~N~~----------~~~~~Di~~~~~~~l~~~~D~l~ggpP 70 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQ-AGFEVVWAVEIDPDACETYKANFP----------EVICGDITEIDPSDLPKDVDLLIGGPP 70 (335)
T ss_dssp EEEEET-TTTHHHHHHHH-TTEEEEEEEESSHHHHHHHHHHHT----------EEEESHGGGCHHHHHHHT-SEEEEE--
T ss_pred cEEEEccCccHHHHHHHh-cCcEEEEEeecCHHHHHhhhhccc----------ccccccccccccccccccceEEEeccC
Confidence 689999999999998886 567899999999999999888852 5678898876543333 5999999999
Q ss_pred CC-----C-----------ccHHHHHHHHhcCCCCcEEEEe
Q 044572 380 RK-----G-----------LDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 380 R~-----G-----------l~~~v~~~l~~~~~~~~ivyvs 404 (457)
-. | |-.++++.+..++ | +++.++
T Consensus 71 CQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~-P-k~~~~E 109 (335)
T PF00145_consen 71 CQGFSIAGKRKGFDDPRNSLFFEFLRIVKELK-P-KYFLLE 109 (335)
T ss_dssp -TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS---SEEEEE
T ss_pred CceEeccccccccccccchhhHHHHHHHhhcc-c-eEEEec
Confidence 32 2 2224666777775 4 555555
No 216
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=97.41 E-value=0.00033 Score=66.01 Aligned_cols=42 Identities=26% Similarity=0.290 Sum_probs=34.4
Q ss_pred CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~ 340 (457)
.+|+.|||.|||+|+.++++.... ++.+|+|++++.++.|++
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l~--R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEELG--RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHcC--CeEEEEeCCHHHHHHhcC
Confidence 479999999999999999888753 589999999999999874
No 217
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.38 E-value=0.0021 Score=59.63 Aligned_cols=100 Identities=14% Similarity=0.069 Sum_probs=65.2
Q ss_pred eEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEE-EEEccCCcCcccccCCccEEEECCC
Q 044572 301 SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNIS-WHNADNSIEPLSWLVGSDVLVVDPP 379 (457)
Q Consensus 301 ~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~-~~~~d~~~~~~~~~~~~D~vi~DPP 379 (457)
.||++|||+|.-=-..-- ....+|+++|.++.|-+.|.+.+..+ .-.++. |+.++.++...-...++|+||.-==
T Consensus 79 ~vLEvgcGtG~Nfkfy~~-~p~~svt~lDpn~~mee~~~ks~~E~---k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPW-KPINSVTCLDPNEKMEEIADKSAAEK---KPLQVERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred ceEEecccCCCCcccccC-CCCceEEEeCCcHHHHHHHHHHHhhc---cCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence 479999999974333332 12458999999999999999988773 335666 9999988764322367998864110
Q ss_pred CCCc--cHHHHHHHHh-cCCCCcEEEEe
Q 044572 380 RKGL--DSSLVHALQS-IGSAERKAKSL 404 (457)
Q Consensus 380 R~Gl--~~~v~~~l~~-~~~~~~ivyvs 404 (457)
-... ..+.++.+++ +++.++++++.
T Consensus 155 LCSve~~~k~L~e~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 155 LCSVEDPVKQLNEVRRLLRPGGRIIFIE 182 (252)
T ss_pred EeccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 0000 0134555554 34667777776
No 218
>PRK11524 putative methyltransferase; Provisional
Probab=97.33 E-value=0.00054 Score=67.80 Aligned_cols=57 Identities=25% Similarity=0.213 Sum_probs=46.0
Q ss_pred HHHHHHHHhhC-CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572 286 DILLRKLQKYV-PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR 344 (457)
Q Consensus 286 ~~l~~~i~~~~-~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~ 344 (457)
+.|++.++... .+|+.|||.|+|||+.++.+.+. .++.+|+|++++.++.|++-++.
T Consensus 195 ~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASSNPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHh
Confidence 34555555544 48999999999999999988875 35999999999999999987653
No 219
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.33 E-value=0.0017 Score=60.98 Aligned_cols=98 Identities=15% Similarity=0.166 Sum_probs=78.2
Q ss_pred HHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccC
Q 044572 290 RKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLV 369 (457)
Q Consensus 290 ~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~ 369 (457)
..+..+++.+..++|+||--|.+++.|-+...+..++++|+++..++.|.+|.+.+ +..+.++...+|....+. ...
T Consensus 8 ~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~--~l~~~i~vr~~dgl~~l~-~~d 84 (226)
T COG2384 8 TTVANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKN--NLSERIDVRLGDGLAVLE-LED 84 (226)
T ss_pred HHHHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhc--CCcceEEEeccCCccccC-ccC
Confidence 45566666778899999999999999999888899999999999999999999884 456788888888865442 224
Q ss_pred CccEEEECCCCCCccHHHHHHHHhc
Q 044572 370 GSDVLVVDPPRKGLDSSLVHALQSI 394 (457)
Q Consensus 370 ~~D~vi~DPPR~Gl~~~v~~~l~~~ 394 (457)
.+|++++ +|+....+..+.+-
T Consensus 85 ~~d~ivI----AGMGG~lI~~ILee 105 (226)
T COG2384 85 EIDVIVI----AGMGGTLIREILEE 105 (226)
T ss_pred CcCEEEE----eCCcHHHHHHHHHH
Confidence 6898887 78877666555543
No 220
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.32 E-value=0.0006 Score=68.56 Aligned_cols=68 Identities=26% Similarity=0.281 Sum_probs=52.9
Q ss_pred EEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCC
Q 044572 302 VTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPP 379 (457)
Q Consensus 302 vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPP 379 (457)
|+|||||.|.+++-+-. .|+.-|.++|+++.|++..+.|... .++.+|+.+........+|+++.-||
T Consensus 1 vidLF~G~GG~~~Gl~~-aG~~~~~a~e~~~~a~~ty~~N~~~---------~~~~~Di~~~~~~~~~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQ-AGFKCVFASEIDKYAQKTYEANFGN---------KVPFGDITKISPSDIPDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHH-cCCeEEEEEeCCHHHHHHHHHhCCC---------CCCccChhhhhhhhCCCcCEEEecCC
Confidence 68999999999998875 5677788999999999998887421 33557776653322346899999999
No 221
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.24 E-value=0.00057 Score=65.22 Aligned_cols=77 Identities=25% Similarity=0.181 Sum_probs=48.3
Q ss_pred CeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHH---HHHhhCCCCC----CCcEEEEEccCCcCcccccCCcc
Q 044572 300 ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE---KTVSRLPKSV----DGNISWHNADNSIEPLSWLVGSD 372 (457)
Q Consensus 300 ~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~---~Na~~~~~~~----~~nv~~~~~d~~~~~~~~~~~~D 372 (457)
.+|||+=+|-|.-++.+|.. |+ +|+++|.|+-.....+ +++.... .. ..+++++++|..+++......||
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~-G~-~V~~lErspvia~Ll~dGL~r~~~~~-~~~~~~~~ri~l~~~d~~~~L~~~~~s~D 153 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL-GC-KVTGLERSPVIAALLKDGLKRAQQDP-ELLAEAMRRIQLIHGDALEYLRQPDNSFD 153 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH-T---EEEEE--HHHHHHHHHHHHHHHHST-TTHHHHHHHEEEEES-CCCHCCCHSS--S
T ss_pred CEEEECCCcchHHHHHHHcc-CC-eEEEEECCHHHHHHHHHHHHHHHhCc-HhHHHHHhCCEEEcCCHHHHHhhcCCCCC
Confidence 48999999999999999975 54 7999999997654443 4443311 11 14799999999988763346899
Q ss_pred EEEECCC
Q 044572 373 VLVVDPP 379 (457)
Q Consensus 373 ~vi~DPP 379 (457)
+|.+||-
T Consensus 154 VVY~DPM 160 (234)
T PF04445_consen 154 VVYFDPM 160 (234)
T ss_dssp EEEE--S
T ss_pred EEEECCC
Confidence 9999996
No 222
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.24 E-value=0.0014 Score=65.16 Aligned_cols=90 Identities=11% Similarity=0.062 Sum_probs=68.3
Q ss_pred HHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC
Q 044572 286 DILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE 363 (457)
Q Consensus 286 ~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~ 363 (457)
..|++.+++++. ++..++|.=+|-|.-|..++...+..+|+|+|.++.|++.|++.++.. ..++++++++-.+.
T Consensus 6 pVll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~----~~R~~~i~~nF~~l 81 (305)
T TIGR00006 6 SVLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF----EGRVVLIHDNFANF 81 (305)
T ss_pred chhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc----CCcEEEEeCCHHHH
Confidence 356677777654 678999999999999999997643369999999999999999987642 35789999886654
Q ss_pred cccc----cCCccEEEECCC
Q 044572 364 PLSW----LVGSDVLVVDPP 379 (457)
Q Consensus 364 ~~~~----~~~~D~vi~DPP 379 (457)
.... ...+|.|++|--
T Consensus 82 ~~~l~~~~~~~vDgIl~DLG 101 (305)
T TIGR00006 82 FEHLDELLVTKIDGILVDLG 101 (305)
T ss_pred HHHHHhcCCCcccEEEEecc
Confidence 2211 145899988653
No 223
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.20 E-value=0.00032 Score=69.43 Aligned_cols=82 Identities=24% Similarity=0.252 Sum_probs=57.8
Q ss_pred hCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHH-------HHHHHhhCCCCCCC-cEEEEEccCCcCccc
Q 044572 295 YVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLS-------FEKTVSRLPKSVDG-NISWHNADNSIEPLS 366 (457)
Q Consensus 295 ~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~-------A~~Na~~~~~~~~~-nv~~~~~d~~~~~~~ 366 (457)
++.+|+.|+|-|-|||.|-+.+|.- | +.|+|-||+-.++.. .+.|.+..+ ..+ -+..+.+|...-...
T Consensus 205 mv~pGdivyDPFVGTGslLvsaa~F-G-a~viGtDIDyr~vragrg~~~si~aNFkQYg--~~~~fldvl~~D~sn~~~r 280 (421)
T KOG2671|consen 205 MVKPGDIVYDPFVGTGSLLVSAAHF-G-AYVIGTDIDYRTVRAGRGEDESIKANFKQYG--SSSQFLDVLTADFSNPPLR 280 (421)
T ss_pred ccCCCCEEecCccccCceeeehhhh-c-ceeeccccchheeecccCCCcchhHhHHHhC--CcchhhheeeecccCcchh
Confidence 4568999999999999999988864 3 499999999998873 345555432 111 134556666543222
Q ss_pred ccCCccEEEECCCC
Q 044572 367 WLVGSDVLVVDPPR 380 (457)
Q Consensus 367 ~~~~~D~vi~DPPR 380 (457)
....||.||.|||+
T Consensus 281 sn~~fDaIvcDPPY 294 (421)
T KOG2671|consen 281 SNLKFDAIVCDPPY 294 (421)
T ss_pred hcceeeEEEeCCCc
Confidence 13469999999996
No 224
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.20 E-value=0.001 Score=63.14 Aligned_cols=53 Identities=13% Similarity=0.109 Sum_probs=41.0
Q ss_pred HHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHH
Q 044572 287 ILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341 (457)
Q Consensus 287 ~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~N 341 (457)
.+++.+...-+....++|+|||+|-.++.+|.. .++|+|+|+|+.|++.|++.
T Consensus 22 dw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~--~k~VIatD~s~~mL~~a~k~ 74 (261)
T KOG3010|consen 22 DWFKKIASRTEGHRLAWDVGTGNGQAARGIAEH--YKEVIATDVSEAMLKVAKKH 74 (261)
T ss_pred HHHHHHHhhCCCcceEEEeccCCCcchHHHHHh--hhhheeecCCHHHHHHhhcC
Confidence 345555554333348999999999888888876 66999999999999988753
No 225
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.19 E-value=0.0013 Score=66.41 Aligned_cols=103 Identities=20% Similarity=0.123 Sum_probs=63.5
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCC-------CCCCcEEEEEccCCcCcc-c-c-
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPK-------SVDGNISWHNADNSIEPL-S-W- 367 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~-------~~~~nv~~~~~d~~~~~~-~-~- 367 (457)
++.+|||||||=|.--.-... .+.+.++|+|++.++|+.|++-.+.... ...-...|+.+|.+.... . +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~-~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQK-AKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHH-TT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHh-cCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 678999999999987666665 5688999999999999999987722100 011356789999875321 1 1
Q ss_pred --cCCccEEEECCCCCCccH---------HHHHHHHhcCCCCcEEEEe
Q 044572 368 --LVGSDVLVVDPPRKGLDS---------SLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 368 --~~~~D~vi~DPPR~Gl~~---------~v~~~l~~~~~~~~ivyvs 404 (457)
...||+|=+ ..++|. .+++.+..+..+++++..+
T Consensus 141 ~~~~~FDvVSc---QFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT 185 (331)
T PF03291_consen 141 PRSRKFDVVSC---QFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT 185 (331)
T ss_dssp STTS-EEEEEE---ES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ccCCCcceeeh---HHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 136898865 233332 2455555544467766665
No 226
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.19 E-value=0.0038 Score=58.27 Aligned_cols=123 Identities=17% Similarity=0.179 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhh--CCCCEEEEEeCCHHHHHHHHHHHhhCC-----------
Q 044572 282 TRAFDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAA--RKCRSVKCVEINKESQLSFEKTVSRLP----------- 346 (457)
Q Consensus 282 ~~~~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~--~~~~~V~gVE~~~~av~~A~~Na~~~~----------- 346 (457)
...+..+++....++. ..-+++|-|||+|.+--.+... ...+.|+|-|+++++++.|++|+..+.
T Consensus 33 VRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL 112 (246)
T PF11599_consen 33 VRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREEL 112 (246)
T ss_dssp HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHH
Confidence 3455666677766664 3357999999999754444432 224689999999999999999965110
Q ss_pred ----------------------------CCCCCcEEEEEccCCcCcc----cccCCccEEEECCCCC------C--ccH-
Q 044572 347 ----------------------------KSVDGNISWHNADNSIEPL----SWLVGSDVLVVDPPRK------G--LDS- 385 (457)
Q Consensus 347 ----------------------------~~~~~nv~~~~~d~~~~~~----~~~~~~D~vi~DPPR~------G--l~~- 385 (457)
.+...-....++|+++.-. ......|+||.|=|+. | -..
T Consensus 113 ~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p 192 (246)
T PF11599_consen 113 RELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGP 192 (246)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHH
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCc
Confidence 0122335677788876321 1123479999999973 3 111
Q ss_pred --HHHHHHHhcCCCCcEEEEe
Q 044572 386 --SLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 386 --~v~~~l~~~~~~~~ivyvs 404 (457)
.+++.|...-+...+|.|+
T Consensus 193 ~~~ml~~l~~vLp~~sVV~v~ 213 (246)
T PF11599_consen 193 VAQMLNSLAPVLPERSVVAVS 213 (246)
T ss_dssp HHHHHHHHHCCS-TT-EEEEE
T ss_pred HHHHHHHHHhhCCCCcEEEEe
Confidence 4566666666677888885
No 227
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.14 E-value=0.0015 Score=60.41 Aligned_cols=93 Identities=23% Similarity=0.203 Sum_probs=65.9
Q ss_pred eEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCC
Q 044572 301 SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPR 380 (457)
Q Consensus 301 ~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR 380 (457)
+++|+|+|.|.=|+.+|-.....+|+.||.+..=+...+.-+..++ .+|++++++++++ ......||+|+. |
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~---L~nv~v~~~R~E~--~~~~~~fd~v~a---R 122 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELG---LSNVEVINGRAEE--PEYRESFDVVTA---R 122 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT----SSEEEEES-HHH--TTTTT-EEEEEE---E
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhC---CCCEEEEEeeecc--cccCCCccEEEe---e
Confidence 8999999999999999977666789999999998888777766643 3689999999988 223468999997 6
Q ss_pred CCcc-HHHHHHHHhcCCCCcEE
Q 044572 381 KGLD-SSLVHALQSIGSAERKA 401 (457)
Q Consensus 381 ~Gl~-~~v~~~l~~~~~~~~iv 401 (457)
+-.. ..+++....+-.+++.+
T Consensus 123 Av~~l~~l~~~~~~~l~~~G~~ 144 (184)
T PF02527_consen 123 AVAPLDKLLELARPLLKPGGRL 144 (184)
T ss_dssp SSSSHHHHHHHHGGGEEEEEEE
T ss_pred hhcCHHHHHHHHHHhcCCCCEE
Confidence 5332 24555555543334433
No 228
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.12 E-value=0.00033 Score=72.51 Aligned_cols=103 Identities=18% Similarity=0.211 Sum_probs=79.6
Q ss_pred CCCeEEEEcccccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc---cCCccE
Q 044572 298 YGASVTDLYAGAGVIGLSLAAAR-KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW---LVGSDV 373 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~-~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~---~~~~D~ 373 (457)
++-+|||..|++|.-+|..|... +.++|++-|.++.+|+..++|++.| +..+.++...+|+....... ...||+
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N--~v~~ive~~~~DA~~lM~~~~~~~~~FDv 186 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELN--GVEDIVEPHHSDANVLMYEHPMVAKFFDV 186 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhc--CchhhcccccchHHHHHHhccccccccce
Confidence 57789999999999999999763 4679999999999999999999984 45566778888886543322 267999
Q ss_pred EEECCCCCCccHHHHHH-HHhcCCCCcEEEEec
Q 044572 374 LVVDPPRKGLDSSLVHA-LQSIGSAERKAKSLS 405 (457)
Q Consensus 374 vi~DPPR~Gl~~~v~~~-l~~~~~~~~ivyvs~ 405 (457)
|=+|| .|.....++. ++.. ..++|+++++
T Consensus 187 IDLDP--yGs~s~FLDsAvqav-~~gGLL~vT~ 216 (525)
T KOG1253|consen 187 IDLDP--YGSPSPFLDSAVQAV-RDGGLLCVTC 216 (525)
T ss_pred EecCC--CCCccHHHHHHHHHh-hcCCEEEEEe
Confidence 99999 3444445554 4445 4789999975
No 229
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.09 E-value=0.0026 Score=64.36 Aligned_cols=94 Identities=20% Similarity=0.216 Sum_probs=68.3
Q ss_pred CeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc-C-CccEEEEC
Q 044572 300 ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL-V-GSDVLVVD 377 (457)
Q Consensus 300 ~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~-~-~~D~vi~D 377 (457)
-+++|||||.|.+.+-+.. .|+.-+.++|+++.|++.-+.|... ..++..|+.+...+.. . .+|+++--
T Consensus 4 ~~~idLFsG~GG~~lGf~~-agf~~~~a~Eid~~a~~ty~~n~~~--------~~~~~~di~~~~~~~~~~~~~DvligG 74 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEE-AGFEIVFANEIDPPAVATYKANFPH--------GDIILGDIKELDGEALRKSDVDVLIGG 74 (328)
T ss_pred ceEEeeccCCchHHHHHHh-cCCeEEEEEecCHHHHHHHHHhCCC--------CceeechHhhcChhhccccCCCEEEeC
Confidence 5799999999999988876 5688899999999999988887542 2566777765543322 2 68999999
Q ss_pred CCC---------CC-------ccHHHHHHHHhcCCCCcEEEEe
Q 044572 378 PPR---------KG-------LDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 378 PPR---------~G-------l~~~v~~~l~~~~~~~~ivyvs 404 (457)
||- .| |--+.++.|..+. + .++.+.
T Consensus 75 pPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~-P-~~fv~E 115 (328)
T COG0270 75 PPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLR-P-KFFVLE 115 (328)
T ss_pred CCCcchhhcCcccCCcCccceeeHHHHHHHHhhC-C-CEEEEe
Confidence 992 22 2235677777776 4 555554
No 230
>PRK13699 putative methylase; Provisional
Probab=97.04 E-value=0.0021 Score=61.57 Aligned_cols=56 Identities=18% Similarity=0.219 Sum_probs=44.3
Q ss_pred HHHHHHHh-hCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572 287 ILLRKLQK-YVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR 344 (457)
Q Consensus 287 ~l~~~i~~-~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~ 344 (457)
.|++.+++ +..+|+.|||.|||+|+.++.+.+. .++.+|+|++++.++.|.+.++.
T Consensus 151 ~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 151 TSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred HHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHHH
Confidence 34444443 3447999999999999999988765 35899999999999999887764
No 231
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.95 E-value=0.0048 Score=61.94 Aligned_cols=69 Identities=22% Similarity=0.136 Sum_probs=52.3
Q ss_pred CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV 376 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~ 376 (457)
.+|.++|||||++|+++-.++++ |+ +|+|||..+-+ .++. ...+|..+.+|.+.+... ...+|+++.
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r-G~-~V~AVD~g~l~-----~~L~-----~~~~V~h~~~d~fr~~p~-~~~vDwvVc 276 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR-GM-FVTAVDNGPMA-----QSLM-----DTGQVEHLRADGFKFRPP-RKNVDWLVC 276 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc-CC-EEEEEechhcC-----Hhhh-----CCCCEEEEeccCcccCCC-CCCCCEEEE
Confidence 36899999999999999999985 44 99999955421 2222 236799999999887543 457899988
Q ss_pred CC
Q 044572 377 DP 378 (457)
Q Consensus 377 DP 378 (457)
|=
T Consensus 277 Dm 278 (357)
T PRK11760 277 DM 278 (357)
T ss_pred ec
Confidence 75
No 232
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.89 E-value=0.012 Score=56.58 Aligned_cols=65 Identities=18% Similarity=0.163 Sum_probs=52.1
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV 376 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~ 376 (457)
...+|+|+|+|+|.++..+++....-+++..|. |+.++.+++ . ++|+++.+|.++.+ .. +|++++
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---~------~rv~~~~gd~f~~~---P~-~D~~~l 164 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---A------DRVEFVPGDFFDPL---PV-ADVYLL 164 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---T------TTEEEEES-TTTCC---SS-ESEEEE
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---c------cccccccccHHhhh---cc-ccceee
Confidence 567899999999999999998877778999999 888888877 2 58999999998543 23 899988
No 233
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.80 E-value=0.0071 Score=59.84 Aligned_cols=130 Identities=12% Similarity=0.086 Sum_probs=82.3
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEccccc----HHHHHHHhhCC----CCEEEEEeCCHHHHHHHHHH
Q 044572 270 ISLAPSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAG----VIGLSLAAARK----CRSVKCVEINKESQLSFEKT 341 (457)
Q Consensus 270 ~~i~~~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G----~~sl~lA~~~~----~~~V~gVE~~~~av~~A~~N 341 (457)
+.+..+.||-. ..+.+.|.+.+... ...-+||..+|.|| ++++.+....+ --+|+|.|+|+.+++.|++.
T Consensus 89 ltineT~FFRd-~~~f~~L~~~~~~~-~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G 166 (287)
T PRK10611 89 LTTNLTAFFRE-AHHFPILAEHARRR-SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG 166 (287)
T ss_pred hhCCCCCccCC-cHHHHHHHHHHHhc-CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence 34556788874 56777776665432 12358999999999 46666654311 13799999999999999865
Q ss_pred H------hh------------C-CC--C-------CCCcEEEEEccCCcCcccccCCccEEEE-------CCCCCCccHH
Q 044572 342 V------SR------------L-PK--S-------VDGNISWHNADNSIEPLSWLVGSDVLVV-------DPPRKGLDSS 386 (457)
Q Consensus 342 a------~~------------~-~~--~-------~~~nv~~~~~d~~~~~~~~~~~~D~vi~-------DPPR~Gl~~~ 386 (457)
. +. . +. + .-..|+|.+.|+.+......+.||+|++ |++- ...
T Consensus 167 ~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~---~~~ 243 (287)
T PRK10611 167 IYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTT---QER 243 (287)
T ss_pred CCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHH---HHH
Confidence 1 00 0 00 0 1246788888887632112367999876 4431 234
Q ss_pred HHHHHHhcCCCCcEEEEe
Q 044572 387 LVHALQSIGSAERKAKSL 404 (457)
Q Consensus 387 v~~~l~~~~~~~~ivyvs 404 (457)
+++.+...-.+++++++.
T Consensus 244 vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 244 ILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred HHHHHHHHhCCCcEEEEe
Confidence 666666655688888886
No 234
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.73 E-value=0.0043 Score=58.64 Aligned_cols=73 Identities=21% Similarity=0.114 Sum_probs=59.4
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCC-ccEEEE
Q 044572 299 GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVG-SDVLVV 376 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~-~D~vi~ 376 (457)
+.+++|+|+|.|.=|+.+|-.....+|+-||....=+...+.-.+.++ .+|++++++.++++..+ .. ||+|..
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~---L~nv~i~~~RaE~~~~~--~~~~D~vts 141 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELG---LENVEIVHGRAEEFGQE--KKQYDVVTS 141 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhC---CCCeEEehhhHhhcccc--cccCcEEEe
Confidence 589999999999999999854455679999999998888887766643 46899999999886532 23 999986
No 235
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.69 E-value=0.0077 Score=64.20 Aligned_cols=101 Identities=16% Similarity=0.069 Sum_probs=68.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCC----CCEEEEEeCCHHHHHHHHHHHhhCCCCCC
Q 044572 275 SSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARK----CRSVKCVEINKESQLSFEKTVSRLPKSVD 350 (457)
Q Consensus 275 ~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~----~~~V~gVE~~~~av~~A~~Na~~~~~~~~ 350 (457)
+-||.. +.+.+.|+.. +.. .+..+|+|-.||+|.+-+.++...+ -...+|.|+++.....|+.|.-.. ++
T Consensus 166 GEfyTP-~~v~~liv~~-l~~-~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lh---gi 239 (489)
T COG0286 166 GEFYTP-REVSELIVEL-LDP-EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILH---GI 239 (489)
T ss_pred CccCCh-HHHHHHHHHH-cCC-CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHh---CC
Confidence 567753 4444444333 322 3677999999999998877776543 146999999999999999998763 22
Q ss_pred C-cEEEEEccCCcCccc----ccCCccEEEECCCCC
Q 044572 351 G-NISWHNADNSIEPLS----WLVGSDVLVVDPPRK 381 (457)
Q Consensus 351 ~-nv~~~~~d~~~~~~~----~~~~~D~vi~DPPR~ 381 (457)
+ ++....+|...-... ....||.|+.+||..
T Consensus 240 ~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~ 275 (489)
T COG0286 240 EGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFS 275 (489)
T ss_pred CccccccccccccCCcccccCCccceeEEEeCCCCC
Confidence 2 455666665443222 225699999999975
No 236
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=96.67 E-value=0.0036 Score=61.75 Aligned_cols=83 Identities=19% Similarity=0.090 Sum_probs=59.9
Q ss_pred HHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCC---CCCCcEEEEEccCCcCcc-cc
Q 044572 292 LQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPK---SVDGNISWHNADNSIEPL-SW 367 (457)
Q Consensus 292 i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~---~~~~nv~~~~~d~~~~~~-~~ 367 (457)
|.++.+.++.++||+||-|+--+-.-+ ++.+.++|+||...+|++|++-.+...+ +.+-.+.|+++|.+.... ..
T Consensus 111 I~~y~~~~~~~~~LgCGKGGDLlKw~k-AgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~ 189 (389)
T KOG1975|consen 111 INLYTKRGDDVLDLGCGKGGDLLKWDK-AGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDL 189 (389)
T ss_pred HHHHhccccccceeccCCcccHhHhhh-hcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHh
Confidence 344556788999999999998888775 6788999999999999999976553211 112257899999886421 11
Q ss_pred ----cCCccEEE
Q 044572 368 ----LVGSDVLV 375 (457)
Q Consensus 368 ----~~~~D~vi 375 (457)
..+||+|=
T Consensus 190 ~e~~dp~fDivS 201 (389)
T KOG1975|consen 190 LEFKDPRFDIVS 201 (389)
T ss_pred ccCCCCCcceee
Confidence 12388774
No 237
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=96.54 E-value=0.022 Score=51.24 Aligned_cols=111 Identities=14% Similarity=0.072 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCC
Q 044572 283 RAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAAR-KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNS 361 (457)
Q Consensus 283 ~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~-~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~ 361 (457)
-.+++|.+.|-- +.|.-||++|-|||.|+-.+.+++ ....+++||.|++-+....+.. +.+.++.||++
T Consensus 35 ~lA~~M~s~I~p--esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~--------p~~~ii~gda~ 104 (194)
T COG3963 35 ILARKMASVIDP--ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY--------PGVNIINGDAF 104 (194)
T ss_pred HHHHHHHhccCc--ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC--------CCccccccchh
Confidence 344555443221 257789999999999999888643 2467999999999998776542 23468999998
Q ss_pred cCcccc----cCCccEEEECCCCCCccH----HHHHHHHhcCCCCcEEEE
Q 044572 362 IEPLSW----LVGSDVLVVDPPRKGLDS----SLVHALQSIGSAERKAKS 403 (457)
Q Consensus 362 ~~~~~~----~~~~D~vi~DPPR~Gl~~----~v~~~l~~~~~~~~ivyv 403 (457)
+.-... ...||.||.-=|-..+.. ++++.+...-+.++-++-
T Consensus 105 ~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 105 DLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred hHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 753111 245899998777443322 345555444344544443
No 238
>PRK10458 DNA cytosine methylase; Provisional
Probab=96.52 E-value=0.013 Score=61.92 Aligned_cols=75 Identities=25% Similarity=0.235 Sum_probs=53.3
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc-------------
Q 044572 299 GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL------------- 365 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~------------- 365 (457)
.-+++|||||.|++++-+-. .|..-|.++|+++.|.+.-+.|... ......+.+|+.+...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~-aG~~~v~a~Eid~~A~~TY~~N~~~-----~p~~~~~~~DI~~i~~~~~~~~~~~~~~~ 161 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEA-IGGQCVFTSEWNKHAVRTYKANWYC-----DPATHRFNEDIRDITLSHKEGVSDEEAAE 161 (467)
T ss_pred CceEEEeCcCccHHHHHHHH-cCCEEEEEEechHHHHHHHHHHcCC-----CCccceeccChhhCccccccccchhhhhh
Confidence 34899999999999998865 5677899999999999988888521 0122334455544321
Q ss_pred ---cccCCccEEEECCC
Q 044572 366 ---SWLVGSDVLVVDPP 379 (457)
Q Consensus 366 ---~~~~~~D~vi~DPP 379 (457)
......|+++.-||
T Consensus 162 ~~~~~~p~~DvL~gGpP 178 (467)
T PRK10458 162 HIRQHIPDHDVLLAGFP 178 (467)
T ss_pred hhhccCCCCCEEEEcCC
Confidence 11235799999999
No 239
>PRK00536 speE spermidine synthase; Provisional
Probab=96.50 E-value=0.071 Score=52.07 Aligned_cols=99 Identities=11% Similarity=-0.043 Sum_probs=68.3
Q ss_pred CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCC-CCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLP-KSVDGNISWHNADNSIEPLSWLVGSDVLV 375 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~-~~~~~nv~~~~~d~~~~~~~~~~~~D~vi 375 (457)
+.-++||=+|.|-|.....+.+.. .+|+.||++++.++.+++-..... ...+.+++++.. + .....+.||+||
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~---~~~~~~~fDVII 144 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-L---LDLDIKKYDLII 144 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-h---hhccCCcCCEEE
Confidence 356899999999999999999863 499999999999999998322110 112467777752 1 111125799999
Q ss_pred ECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 376 VDPPRKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 376 ~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
+|-. -+++..+.+.+.-.+++++.+-
T Consensus 145 vDs~---~~~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 145 CLQE---PDIHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred EcCC---CChHHHHHHHHhcCCCcEEEEC
Confidence 9922 1245666666655577777764
No 240
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=96.42 E-value=0.029 Score=54.96 Aligned_cols=99 Identities=12% Similarity=0.084 Sum_probs=68.7
Q ss_pred CCeEEEEcccccHHHHHHHhhCC--CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc--ccccCCccEE
Q 044572 299 GASVTDLYAGAGVIGLSLAAARK--CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LSWLVGSDVL 374 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~~~--~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~--~~~~~~~D~v 374 (457)
.-+|||+.||.|-.=+-+..... ..+|...|.++..|+..++-++.. +..+-++|.++|+++.. ......++++
T Consensus 136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~--gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAER--GLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHc--CCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 45899999999987666665433 368999999999999999998874 33344599999999852 2223457888
Q ss_pred EECCCCCCccH-----HH----HHHHHh-cCCCCcEEEE
Q 044572 375 VVDPPRKGLDS-----SL----VHALQS-IGSAERKAKS 403 (457)
Q Consensus 375 i~DPPR~Gl~~-----~v----~~~l~~-~~~~~~ivyv 403 (457)
|+ +|+-. ++ ++.+.. +.+.+.+||.
T Consensus 214 iV----sGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyT 248 (311)
T PF12147_consen 214 IV----SGLYELFPDNDLVRRSLAGLARALEPGGYLIYT 248 (311)
T ss_pred EE----ecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEc
Confidence 76 45422 32 233333 4556677776
No 241
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.27 E-value=0.083 Score=49.96 Aligned_cols=102 Identities=15% Similarity=-0.008 Sum_probs=67.7
Q ss_pred CCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc--cccCCccE
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWLVGSDV 373 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~--~~~~~~D~ 373 (457)
.+|.+||-||+.+|+.--+++...+ -+.|+|||.++...++.-.=++. -.|+--+-+|+..-.. .+.+..|+
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-----R~NIiPIl~DAr~P~~Y~~lv~~VDv 146 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-----RPNIIPILEDARHPEKYRMLVEMVDV 146 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-----STTEEEEES-TTSGGGGTTTS--EEE
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-----CCceeeeeccCCChHHhhcccccccE
Confidence 4799999999999999999998765 56999999999887776655544 2578889999874211 12357899
Q ss_pred EEECCCCCCccHHHHHHHH-hcCCCCcEEEEe
Q 044572 374 LVVDPPRKGLDSSLVHALQ-SIGSAERKAKSL 404 (457)
Q Consensus 374 vi~DPPR~Gl~~~v~~~l~-~~~~~~~ivyvs 404 (457)
|+.|=...+-..-+..... -++ .++.+.++
T Consensus 147 I~~DVaQp~Qa~I~~~Na~~fLk-~gG~~~i~ 177 (229)
T PF01269_consen 147 IFQDVAQPDQARIAALNARHFLK-PGGHLIIS 177 (229)
T ss_dssp EEEE-SSTTHHHHHHHHHHHHEE-EEEEEEEE
T ss_pred EEecCCChHHHHHHHHHHHhhcc-CCcEEEEE
Confidence 9999876554443333332 344 45544443
No 242
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=96.23 E-value=0.013 Score=55.85 Aligned_cols=98 Identities=11% Similarity=0.060 Sum_probs=65.1
Q ss_pred eEEEEcccccHHHHHHHhhCCC--CEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc-cc--ccCCccEEE
Q 044572 301 SVTDLYAGAGVIGLSLAAARKC--RSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP-LS--WLVGSDVLV 375 (457)
Q Consensus 301 ~vLDl~cG~G~~sl~lA~~~~~--~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~-~~--~~~~~D~vi 375 (457)
+||++|||+|....++.+...- -+|++.|-|+.|++..++|.+-+ .+++.....|+...- .. ..+.+|+|+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~----e~~~~afv~Dlt~~~~~~~~~~~svD~it 149 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD----ESRVEAFVWDLTSPSLKEPPEEGSVDIIT 149 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc----hhhhcccceeccchhccCCCCcCccceEE
Confidence 7999999999999999874332 47999999999999999987652 234444444543211 10 124577543
Q ss_pred E------CCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 376 V------DPPRKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 376 ~------DPPR~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
+ =+|-+ ...+++.+.++..|++.++..
T Consensus 150 ~IFvLSAi~pek--~~~a~~nl~~llKPGG~llfr 182 (264)
T KOG2361|consen 150 LIFVLSAIHPEK--MQSVIKNLRTLLKPGGSLLFR 182 (264)
T ss_pred EEEEEeccChHH--HHHHHHHHHHHhCCCcEEEEe
Confidence 3 23322 234677777776688888874
No 243
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.16 E-value=0.042 Score=55.49 Aligned_cols=112 Identities=24% Similarity=0.229 Sum_probs=74.9
Q ss_pred CCCCCeEEEEcccccHHHHHHHhhCCCC----EEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccc----c
Q 044572 296 VPYGASVTDLYAGAGVIGLSLAAARKCR----SVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS----W 367 (457)
Q Consensus 296 ~~~~~~vLDl~cG~G~~sl~lA~~~~~~----~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~----~ 367 (457)
+.+|++|||+|+--|.=++.+....... .|++-|.++.=+....+.++... ..+..+...|+..+... +
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~---~~~~~v~~~~~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP---SPNLLVTNHDASLFPNIYLKDG 229 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC---CcceeeecccceeccccccccC
Confidence 4589999999999998775555433223 89999999988887777665532 34555556665443211 1
Q ss_pred ----cCCccEEEECCCCC----------------------CccH----HHHHHHHhcCCCCcEEEEeccCCCCCchhc
Q 044572 368 ----LVGSDVLVVDPPRK----------------------GLDS----SLVHALQSIGSAERKAKSLSESSSSMVKEE 415 (457)
Q Consensus 368 ----~~~~D~vi~DPPR~----------------------Gl~~----~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~ 415 (457)
...||-|++|=|-+ ||+. -+...++.++.++++||.+ |+....
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST-----CSLnpi 302 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST-----CSLNPI 302 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec-----cCCCch
Confidence 13699999999943 2222 1344566677899999997 776543
No 244
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.06 E-value=0.037 Score=53.26 Aligned_cols=117 Identities=15% Similarity=0.116 Sum_probs=70.4
Q ss_pred HHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc
Q 044572 285 FDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP 364 (457)
Q Consensus 285 ~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~ 364 (457)
.+.+|+.+...+....+|+|++||.=-+++..-.......++|+||+..+++...+-...++ -+.++...|.....
T Consensus 92 Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~----~~~~~~v~Dl~~~~ 167 (251)
T PF07091_consen 92 LDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG----VPHDARVRDLLSDP 167 (251)
T ss_dssp HHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-----CEEEEEE-TTTSH
T ss_pred HHHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC----CCcceeEeeeeccC
Confidence 46777888777766789999999999999988754433589999999999999988777642 34566666765542
Q ss_pred ccccCCccEEEE--CCC-----CCCccHHHHHHHHhcCCCCcEEEEeccCCCCCc
Q 044572 365 LSWLVGSDVLVV--DPP-----RKGLDSSLVHALQSIGSAERKAKSLSESSSSMV 412 (457)
Q Consensus 365 ~~~~~~~D~vi~--DPP-----R~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~ 412 (457)
. ....|+.++ =-| +.|.. .+.|..+. ...+.||-...+-+.
T Consensus 168 ~--~~~~DlaLllK~lp~le~q~~g~g---~~ll~~~~--~~~~vVSfPtrSL~g 215 (251)
T PF07091_consen 168 P--KEPADLALLLKTLPCLERQRRGAG---LELLDALR--SPHVVVSFPTRSLGG 215 (251)
T ss_dssp T--TSEESEEEEET-HHHHHHHSTTHH---HHHHHHSC--ESEEEEEEES-----
T ss_pred C--CCCcchhhHHHHHHHHHHHhcchH---HHHHHHhC--CCeEEEecccccccc
Confidence 2 234676655 112 34433 33344443 455666645555444
No 245
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=96.04 E-value=0.078 Score=51.29 Aligned_cols=105 Identities=21% Similarity=0.163 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHh-hCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEc
Q 044572 282 TRAFDILLRKLQK-YVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNA 358 (457)
Q Consensus 282 ~~~~~~l~~~i~~-~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~ 358 (457)
.+|..+|+..-.. +-. ...++||+|+|.|..+..+|.. +++|++-|.|+.|....++ + ..+.+
T Consensus 75 ~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~--f~~v~aTE~S~~Mr~rL~~---k-------g~~vl-- 140 (265)
T PF05219_consen 75 EEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPL--FKEVYATEASPPMRWRLSK---K-------GFTVL-- 140 (265)
T ss_pred HHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhh--cceEEeecCCHHHHHHHHh---C-------CCeEE--
Confidence 6777777764321 111 3568999999999999999976 5699999999999654432 1 12223
Q ss_pred cCCcCcccccCCccEEEE----CCCCCCccHHHHHHHHhcCCCCcEEEE
Q 044572 359 DNSIEPLSWLVGSDVLVV----DPPRKGLDSSLVHALQSIGSAERKAKS 403 (457)
Q Consensus 359 d~~~~~~~~~~~~D~vi~----DPPR~Gl~~~v~~~l~~~~~~~~ivyv 403 (457)
|..++ .+...+||+|.+ | |..-...+++.+...-.+.+++.+
T Consensus 141 ~~~~w-~~~~~~fDvIscLNvLD--Rc~~P~~LL~~i~~~l~p~G~lil 186 (265)
T PF05219_consen 141 DIDDW-QQTDFKFDVISCLNVLD--RCDRPLTLLRDIRRALKPNGRLIL 186 (265)
T ss_pred ehhhh-hccCCceEEEeehhhhh--ccCCHHHHHHHHHHHhCCCCEEEE
Confidence 22222 111246998854 3 222233566666654335555544
No 246
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=95.97 E-value=0.037 Score=53.68 Aligned_cols=117 Identities=16% Similarity=0.130 Sum_probs=79.9
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccc-ccCCccEEEE
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS-WLVGSDVLVV 376 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~-~~~~~D~vi~ 376 (457)
.|+.|+=+| ---.+|+++|..+.+++|..|||++..++..++-++..+ .+|++.+.-|+..-+.+ +..+||+.+.
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g---~~~ie~~~~Dlr~plpe~~~~kFDvfiT 227 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELG---YNNIEAFVFDLRNPLPEDLKRKFDVFIT 227 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhC---ccchhheeehhcccChHHHHhhCCeeec
Confidence 477788777 666788888887778999999999999999999998853 45788888888775544 3478999999
Q ss_pred CCCCC--CccHHHHHHHHhcCCC--CcEEEEeccCCCCCchhchhhHHHHHH
Q 044572 377 DPPRK--GLDSSLVHALQSIGSA--ERKAKSLSESSSSMVKEEKRPWILRAK 424 (457)
Q Consensus 377 DPPR~--Gl~~~v~~~l~~~~~~--~~ivyvs~~~~~c~~~~~~~~~~~~~~ 424 (457)
|||.. |+.-=+-..+..++.. .+..+++ -.+.+.+.|.+.-+
T Consensus 228 DPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT------~ressidkW~eiQr 273 (354)
T COG1568 228 DPPETIKALKLFLGRGIATLKGEGCAGYFGIT------RRESSIDKWREIQR 273 (354)
T ss_pred CchhhHHHHHHHHhccHHHhcCCCccceEeee------eccccHHHHHHHHH
Confidence 99953 2221112223334422 3566664 22344555655544
No 247
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=95.92 E-value=0.012 Score=60.15 Aligned_cols=58 Identities=19% Similarity=0.201 Sum_probs=48.6
Q ss_pred eEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCC
Q 044572 301 SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNS 361 (457)
Q Consensus 301 ~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~ 361 (457)
.|||+|.|||.+++.+++ .|+.+|+|+|.-+.|++.|++-..++ +..++|..|.-.-.
T Consensus 69 ~vLdigtGTGLLSmMAvr-agaD~vtA~EvfkPM~d~arkI~~kn--g~SdkI~vInkrSt 126 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVR-AGADSVTACEVFKPMVDLARKIMHKN--GMSDKINVINKRST 126 (636)
T ss_pred EEEEccCCccHHHHHHHH-hcCCeEEeehhhchHHHHHHHHHhcC--CCccceeeeccccc
Confidence 589999999999999886 56899999999999999999887764 45678888765443
No 248
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.72 E-value=0.026 Score=49.73 Aligned_cols=78 Identities=21% Similarity=0.113 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccC
Q 044572 281 NTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADN 360 (457)
Q Consensus 281 n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~ 360 (457)
.++|.+.+++.+.. .+..+.+|||+|-|-+-+.+|+. +....+|||.|+..+..++-.+-+. +....+.|..-|.
T Consensus 57 tteQv~nVLSll~~--n~~GklvDlGSGDGRiVlaaar~-g~~~a~GvELNpwLVaysrl~a~R~--g~~k~trf~Rkdl 131 (199)
T KOG4058|consen 57 TTEQVENVLSLLRG--NPKGKLVDLGSGDGRIVLAAARC-GLRPAVGVELNPWLVAYSRLHAWRA--GCAKSTRFRRKDL 131 (199)
T ss_pred cHHHHHHHHHHccC--CCCCcEEeccCCCceeehhhhhh-CCCcCCceeccHHHHHHHHHHHHHH--hcccchhhhhhhh
Confidence 35666655554333 24468999999999999998874 4678999999999999998776542 3445678888888
Q ss_pred CcC
Q 044572 361 SIE 363 (457)
Q Consensus 361 ~~~ 363 (457)
.+.
T Consensus 132 wK~ 134 (199)
T KOG4058|consen 132 WKV 134 (199)
T ss_pred hhc
Confidence 765
No 249
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=95.69 E-value=0.043 Score=49.41 Aligned_cols=75 Identities=15% Similarity=0.119 Sum_probs=47.5
Q ss_pred EEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECCCCCCcc-----HHHHHHHHhcCCCCcE
Q 044572 326 KCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGLD-----SSLVHALQSIGSAERK 400 (457)
Q Consensus 326 ~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~-----~~v~~~l~~~~~~~~i 400 (457)
+|||+|++|++.|+++.+....+...+++|+++|+.+... ..+.||+|++. .++. .++++.+.+.-++++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~-~~~~fD~v~~~---~~l~~~~d~~~~l~ei~rvLkpGG~ 76 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF-DDCEFDAVTMG---YGLRNVVDRLRAMKEMYRVLKPGSR 76 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC-CCCCeeEEEec---chhhcCCCHHHHHHHHHHHcCcCeE
Confidence 4899999999999877653211223579999999987542 23579998763 2221 2345555544446655
Q ss_pred EEEe
Q 044572 401 AKSL 404 (457)
Q Consensus 401 vyvs 404 (457)
+++.
T Consensus 77 l~i~ 80 (160)
T PLN02232 77 VSIL 80 (160)
T ss_pred EEEE
Confidence 5543
No 250
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=95.60 E-value=0.051 Score=53.52 Aligned_cols=64 Identities=20% Similarity=0.211 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhh
Q 044572 281 NTRAFDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSR 344 (457)
Q Consensus 281 n~~~~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~ 344 (457)
|..+...++..+...++ .-.+|||+|||.|+-...+....+ ..++++||.|+.|++.++.=++.
T Consensus 14 ~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~ 80 (274)
T PF09243_consen 14 TYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA 80 (274)
T ss_pred HHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc
Confidence 44455555565554433 346899999999987666554332 56899999999999998876554
No 251
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=95.56 E-value=0.0091 Score=54.73 Aligned_cols=79 Identities=22% Similarity=0.143 Sum_probs=50.2
Q ss_pred HHHHHHHHhh--CC--CCCeEEEEcccccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccC
Q 044572 286 DILLRKLQKY--VP--YGASVTDLYAGAGVIGLSLAAAR-KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADN 360 (457)
Q Consensus 286 ~~l~~~i~~~--~~--~~~~vLDl~cG~G~~sl~lA~~~-~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~ 360 (457)
-+|++...++ +. ++.+||||||+.|+++-.+..+. ...+|+|||+.+.. . ..++.++++|.
T Consensus 7 ~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~---------~-----~~~~~~i~~d~ 72 (181)
T PF01728_consen 7 FKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD---------P-----LQNVSFIQGDI 72 (181)
T ss_dssp HHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG---------S------TTEEBTTGGG
T ss_pred HHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccc---------c-----ccceeeeeccc
Confidence 3555544443 23 34899999999999999999864 14699999998871 1 13456667776
Q ss_pred CcC-----ccccc----CCccEEEECC
Q 044572 361 SIE-----PLSWL----VGSDVLVVDP 378 (457)
Q Consensus 361 ~~~-----~~~~~----~~~D~vi~DP 378 (457)
.+. +.... ..+|+|+.|=
T Consensus 73 ~~~~~~~~i~~~~~~~~~~~dlv~~D~ 99 (181)
T PF01728_consen 73 TNPENIKDIRKLLPESGEKFDLVLSDM 99 (181)
T ss_dssp EEEEHSHHGGGSHGTTTCSESEEEE--
T ss_pred chhhHHHhhhhhccccccCcceecccc
Confidence 432 11111 4799999997
No 252
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.42 E-value=0.005 Score=51.20 Aligned_cols=74 Identities=14% Similarity=0.096 Sum_probs=27.6
Q ss_pred EEEcccccHHHHHHHhhCC-C--CEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc-CCccEEEECC
Q 044572 303 TDLYAGAGVIGLSLAAARK-C--RSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL-VGSDVLVVDP 378 (457)
Q Consensus 303 LDl~cG~G~~sl~lA~~~~-~--~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~-~~~D~vi~DP 378 (457)
|++|+..|..++.+++... . .++++||..+. .+.++++++.. +..+++++++++..+.+..+. ..+|++++|=
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~--~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKA--GLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG 77 (106)
T ss_dssp --------------------------EEEESS-------------G--GG-BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhc--CCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence 6889889988888775322 1 37999999996 33334444331 233579999999987766554 6899999997
Q ss_pred C
Q 044572 379 P 379 (457)
Q Consensus 379 P 379 (457)
.
T Consensus 78 ~ 78 (106)
T PF13578_consen 78 D 78 (106)
T ss_dssp -
T ss_pred C
Confidence 6
No 253
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.40 E-value=0.019 Score=57.22 Aligned_cols=89 Identities=12% Similarity=0.115 Sum_probs=61.1
Q ss_pred HHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc
Q 044572 287 ILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP 364 (457)
Q Consensus 287 ~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~ 364 (457)
.|++.+++++. ++..++|+=-|.|+-+..+.......+|+|+|.+++|++.|+++++. ..+++.+++++-.+..
T Consensus 7 Vll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~----~~~r~~~~~~~F~~l~ 82 (310)
T PF01795_consen 7 VLLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKK----FDDRFIFIHGNFSNLD 82 (310)
T ss_dssp TTHHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCC----CCTTEEEEES-GGGHH
T ss_pred ccHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhh----ccceEEEEeccHHHHH
Confidence 45666666653 67899999999999999998754457999999999999999887654 2468999998865432
Q ss_pred c---cc--cCCccEEEECCC
Q 044572 365 L---SW--LVGSDVLVVDPP 379 (457)
Q Consensus 365 ~---~~--~~~~D~vi~DPP 379 (457)
. .. ...+|-|++|--
T Consensus 83 ~~l~~~~~~~~~dgiL~DLG 102 (310)
T PF01795_consen 83 EYLKELNGINKVDGILFDLG 102 (310)
T ss_dssp HHHHHTTTTS-EEEEEEE-S
T ss_pred HHHHHccCCCccCEEEEccc
Confidence 1 11 246899999764
No 254
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.22 E-value=0.1 Score=49.79 Aligned_cols=103 Identities=17% Similarity=0.158 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhh-C-CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEE-Ecc
Q 044572 283 RAFDILLRKLQKY-V-PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWH-NAD 359 (457)
Q Consensus 283 ~~~~~l~~~i~~~-~-~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~-~~d 359 (457)
....+|...+..+ + .+|..+||+|+-||.|+..+.. .||++|+|||..-.-+.. .++. ..++..+ ..|
T Consensus 62 RG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq-~gAk~VyavDVG~~Ql~~---kLR~-----d~rV~~~E~tN 132 (245)
T COG1189 62 RGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQ-RGAKHVYAVDVGYGQLHW---KLRN-----DPRVIVLERTN 132 (245)
T ss_pred cHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHH-cCCcEEEEEEccCCccCH---hHhc-----CCcEEEEecCC
Confidence 3445555544332 1 2789999999999999999997 578999999997655433 2221 2344433 333
Q ss_pred CCcCcc-cccCCccEEEECCCCCCccHHHHHHHHhcC
Q 044572 360 NSIEPL-SWLVGSDVLVVDPPRKGLDSSLVHALQSIG 395 (457)
Q Consensus 360 ~~~~~~-~~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~ 395 (457)
+...-. .+.+..|++++|=.-.-+.. ++-.+..+.
T Consensus 133 ~r~l~~~~~~~~~d~~v~DvSFISL~~-iLp~l~~l~ 168 (245)
T COG1189 133 VRYLTPEDFTEKPDLIVIDVSFISLKL-ILPALLLLL 168 (245)
T ss_pred hhhCCHHHcccCCCeEEEEeehhhHHH-HHHHHHHhc
Confidence 332221 12246789999987655543 555555544
No 255
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.02 E-value=0.62 Score=43.68 Aligned_cols=71 Identities=21% Similarity=0.099 Sum_probs=53.1
Q ss_pred CCCCCeEEEEcccccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc--c---cc-
Q 044572 296 VPYGASVTDLYAGAGVIGLSLAAARKC-RSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL--S---WL- 368 (457)
Q Consensus 296 ~~~~~~vLDl~cG~G~~sl~lA~~~~~-~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~--~---~~- 368 (457)
+.++..|+||||--|..+..+++..+. ..|+|||+.|-. ...+|.++++|...... + ..
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~--------------~~~~V~~iq~d~~~~~~~~~l~~~l~ 108 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK--------------PIPGVIFLQGDITDEDTLEKLLEALG 108 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc--------------cCCCceEEeeeccCccHHHHHHHHcC
Confidence 457899999999999999999987553 349999998753 23468999999875321 1 11
Q ss_pred C-CccEEEECCCC
Q 044572 369 V-GSDVLVVDPPR 380 (457)
Q Consensus 369 ~-~~D~vi~DPPR 380 (457)
. .+|+|+.|+-+
T Consensus 109 ~~~~DvV~sD~ap 121 (205)
T COG0293 109 GAPVDVVLSDMAP 121 (205)
T ss_pred CCCcceEEecCCC
Confidence 2 36999988854
No 256
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.01 E-value=0.61 Score=43.53 Aligned_cols=112 Identities=14% Similarity=0.011 Sum_probs=74.9
Q ss_pred CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc--cccCCccEE
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWLVGSDVL 374 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~--~~~~~~D~v 374 (457)
.+|++||=||+-+|+..-+.+...+...|+|||.++......-.-++. -.|+--+-+||..-.. .+.+..|+|
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~-----R~Ni~PIL~DA~~P~~Y~~~Ve~VDvi 149 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK-----RPNIIPILEDARKPEKYRHLVEKVDVI 149 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh-----CCCceeeecccCCcHHhhhhcccccEE
Confidence 479999999999999999999887767899999999988766655544 2477888899865211 123678999
Q ss_pred EECCCCCCccHHHHHHHHhcCCCCcEEEEeccCCCCCch
Q 044572 375 VVDPPRKGLDSSLVHALQSIGSAERKAKSLSESSSSMVK 413 (457)
Q Consensus 375 i~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~ 413 (457)
+.|=-..+-..-+........+.++-+.++-.+++.+..
T Consensus 150 y~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT 188 (231)
T COG1889 150 YQDVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVT 188 (231)
T ss_pred EEecCCchHHHHHHHHHHHhcccCCeEEEEEEeeccccc
Confidence 999875443333333333333345544443344444433
No 257
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.73 E-value=0.048 Score=48.88 Aligned_cols=127 Identities=17% Similarity=0.042 Sum_probs=72.7
Q ss_pred CCCeEEEEccc-ccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc-cccCCccEEE
Q 044572 298 YGASVTDLYAG-AGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL-SWLVGSDVLV 375 (457)
Q Consensus 298 ~~~~vLDl~cG-~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~-~~~~~~D~vi 375 (457)
.|.+||+||.| +|.-|+.+|..+...+|..-|.++++|+..++-...|.....+.+..+.-+....-. +....||+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 47889999998 466778888777778999999999999988876544211222333222222211111 1123699887
Q ss_pred ECCCC--CCccHHHHHHHHhcC-CCCcEEEEeccCCCCCchhchhhHHHHHHHhccc
Q 044572 376 VDPPR--KGLDSSLVHALQSIG-SAERKAKSLSESSSSMVKEEKRPWILRAKEASVQ 429 (457)
Q Consensus 376 ~DPPR--~Gl~~~v~~~l~~~~-~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~~~ 429 (457)
.---- ...+..+++.|..+- +.++.++.| =--...++.|.+.+...+-.
T Consensus 109 aADClFfdE~h~sLvdtIk~lL~p~g~Al~fs-----PRRg~sL~kF~de~~~~gf~ 160 (201)
T KOG3201|consen 109 AADCLFFDEHHESLVDTIKSLLRPSGRALLFS-----PRRGQSLQKFLDEVGTVGFT 160 (201)
T ss_pred eccchhHHHHHHHHHHHHHHHhCcccceeEec-----CcccchHHHHHHHHHhceeE
Confidence 52221 112345566665543 334444443 11224567777776666533
No 258
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=94.62 E-value=0.09 Score=49.62 Aligned_cols=139 Identities=15% Similarity=0.023 Sum_probs=77.2
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECC
Q 044572 299 GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDP 378 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DP 378 (457)
..+.||+|||.|-+|-.+... -+.+|..||-++..++.|++.+.. +...-.++++.-+.++.+. ..+||+|.+-=
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~-~f~~VDlVEp~~~Fl~~a~~~l~~---~~~~v~~~~~~gLQ~f~P~-~~~YDlIW~QW 130 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLP-VFDEVDLVEPVEKFLEQAKEYLGK---DNPRVGEFYCVGLQDFTPE-EGKYDLIWIQW 130 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCC-C-SEEEEEES-HHHHHHHHHHTCC---GGCCEEEEEES-GGG-----TT-EEEEEEES
T ss_pred cceEEecccccchhHHHHHHH-hcCEeEEeccCHHHHHHHHHHhcc---cCCCcceEEecCHhhccCC-CCcEeEEEehH
Confidence 468999999999999876543 378999999999999999976543 1123357888887776543 35799997621
Q ss_pred CCCCc-cHHHHHHHHhcC---CCCcEEEEeccCCCCCch-----------hchhhHHHHHHHhccccccccCCCCCCCCC
Q 044572 379 PRKGL-DSSLVHALQSIG---SAERKAKSLSESSSSMVK-----------EEKRPWILRAKEASVQIGSKTNSENQSLPQ 443 (457)
Q Consensus 379 PR~Gl-~~~v~~~l~~~~---~~~~ivyvs~~~~~c~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 443 (457)
=-.=| +.++++.|.+++ .++++|.+- +.-+.... -..+.|..+..+++-++.... ...++|.
T Consensus 131 ~lghLTD~dlv~fL~RCk~~L~~~G~IvvK-EN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~--~Q~~fP~ 207 (218)
T PF05891_consen 131 CLGHLTDEDLVAFLKRCKQALKPNGVIVVK-ENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEE--KQKGFPK 207 (218)
T ss_dssp -GGGS-HHHHHHHHHHHHHHEEEEEEEEEE-EEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEE--E-TT--T
T ss_pred hhccCCHHHHHHHHHHHHHhCcCCcEEEEE-ecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEec--cccCCCc
Confidence 11111 346777776653 356666662 22111111 124567777777766553211 2345555
Q ss_pred ce
Q 044572 444 TL 445 (457)
Q Consensus 444 ~~ 445 (457)
.|
T Consensus 208 ~L 209 (218)
T PF05891_consen 208 EL 209 (218)
T ss_dssp TS
T ss_pred cc
Confidence 43
No 259
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=94.35 E-value=0.14 Score=47.86 Aligned_cols=125 Identities=10% Similarity=0.039 Sum_probs=68.5
Q ss_pred CCCCCCCHHHHHHHHHHHH-hhCC-----CCCeEEEEccccc----HHHHHHHhh--CCC---CEEEEEeCCHHHHHHHH
Q 044572 275 SSFGQANTRAFDILLRKLQ-KYVP-----YGASVTDLYAGAG----VIGLSLAAA--RKC---RSVKCVEINKESQLSFE 339 (457)
Q Consensus 275 ~~FfQ~n~~~~~~l~~~i~-~~~~-----~~~~vLDl~cG~G----~~sl~lA~~--~~~---~~V~gVE~~~~av~~A~ 339 (457)
+.||. +.++.+.|.+.+. ..+. ..-+||.+||++| ++++.+... ... -+|+|.|+|+.+++.|+
T Consensus 3 T~FFR-d~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar 81 (196)
T PF01739_consen 3 TYFFR-DPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKAR 81 (196)
T ss_dssp --TTT-TTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHH
T ss_pred CcccC-CHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHH
Confidence 45666 5678888888887 3332 2347999999999 466666551 112 28999999999999997
Q ss_pred HH------Hh-------------hCCCC------CCCcEEEEEccCCcCcccccCCccEEEECCCCCCc-------cHHH
Q 044572 340 KT------VS-------------RLPKS------VDGNISWHNADNSIEPLSWLVGSDVLVVDPPRKGL-------DSSL 387 (457)
Q Consensus 340 ~N------a~-------------~~~~~------~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl-------~~~v 387 (457)
+- ++ ..+.. .-++|+|...|+.+ .....+.||+|++ |.-+ ...+
T Consensus 82 ~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~C---RNVlIYF~~~~~~~v 157 (196)
T PF01739_consen 82 AGIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFC---RNVLIYFDPETQQRV 157 (196)
T ss_dssp HTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT--S------EEEEEE----SSGGGS-HHHHHHH
T ss_pred hCCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCC-CCcccCCccEEEe---cCEEEEeCHHHHHHH
Confidence 52 10 00000 11368888888877 2223467999987 3221 2345
Q ss_pred HHHHHhcCCCCcEEEEe
Q 044572 388 VHALQSIGSAERKAKSL 404 (457)
Q Consensus 388 ~~~l~~~~~~~~ivyvs 404 (457)
++.+...-.+++.+++.
T Consensus 158 l~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 158 LRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp HHHHGGGEEEEEEEEE-
T ss_pred HHHHHHHcCCCCEEEEe
Confidence 66665554588888886
No 260
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=94.30 E-value=0.89 Score=37.96 Aligned_cols=99 Identities=16% Similarity=0.072 Sum_probs=55.4
Q ss_pred EEEEcccccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc--CCccEEEECC
Q 044572 302 VTDLYAGAGVIGLSLAAARKC-RSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL--VGSDVLVVDP 378 (457)
Q Consensus 302 vLDl~cG~G~~sl~lA~~~~~-~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~--~~~D~vi~DP 378 (457)
++|++||+|... .++..... ..++++|.++.++..++..... . . ..++.++.+|......... ..+|++....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~-~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-A-G-LGLVDFVVADALGGVLPFEDSASFDLVISLL 127 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-c-C-CCceEEEEeccccCCCCCCCCCceeEEeeee
Confidence 999999999976 33332221 3799999999999985544322 1 1 1116788888765211122 2688874444
Q ss_pred CCCCc-cHHHHHHHHhcCCCCcEEEEe
Q 044572 379 PRKGL-DSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 379 PR~Gl-~~~v~~~l~~~~~~~~ivyvs 404 (457)
..... ...++..+.....+++.+.++
T Consensus 128 ~~~~~~~~~~~~~~~~~l~~~g~~~~~ 154 (257)
T COG0500 128 VLHLLPPAKALRELLRVLKPGGRLVLS 154 (257)
T ss_pred ehhcCCHHHHHHHHHHhcCCCcEEEEE
Confidence 32211 133444444433345544443
No 261
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=94.23 E-value=0.23 Score=46.54 Aligned_cols=88 Identities=19% Similarity=0.248 Sum_probs=58.6
Q ss_pred HHHHHHHHhhCCCCC-eEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcE-EEEEccCCcC
Q 044572 286 DILLRKLQKYVPYGA-SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNI-SWHNADNSIE 363 (457)
Q Consensus 286 ~~l~~~i~~~~~~~~-~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv-~~~~~d~~~~ 363 (457)
+-+++.+.+++.... +||+++||||--+.++|+...--.-.--|.++......+..+...+ ..|+ .-+..|+.+.
T Consensus 12 ~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~---~~Nv~~P~~lDv~~~ 88 (204)
T PF06080_consen 12 DPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAG---LPNVRPPLALDVSAP 88 (204)
T ss_pred hHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcC---CcccCCCeEeecCCC
Confidence 455566666666445 5999999999999999987665567788999988777776665532 2332 2455666654
Q ss_pred cccc-------cCCccEEEE
Q 044572 364 PLSW-------LVGSDVLVV 376 (457)
Q Consensus 364 ~~~~-------~~~~D~vi~ 376 (457)
...+ ...||.|+.
T Consensus 89 ~w~~~~~~~~~~~~~D~i~~ 108 (204)
T PF06080_consen 89 PWPWELPAPLSPESFDAIFC 108 (204)
T ss_pred CCccccccccCCCCcceeee
Confidence 2222 236888765
No 262
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=94.21 E-value=0.38 Score=48.46 Aligned_cols=86 Identities=8% Similarity=0.009 Sum_probs=54.0
Q ss_pred CCCCCCCHHH--HHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHh-h---CCCCEEEEEeCCHHHHHHHHHHHhhCCCC
Q 044572 275 SSFGQANTRA--FDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAA-A---RKCRSVKCVEINKESQLSFEKTVSRLPKS 348 (457)
Q Consensus 275 ~~FfQ~n~~~--~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~-~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~ 348 (457)
..|++.+.+. .+.-...|...+.++..++|||||+|.=+-.|.. . ......++||+|.++++.+.+++.. .
T Consensus 51 pEYYptr~E~~iL~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~---~ 127 (319)
T TIGR03439 51 PEYYLTNDEIEILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPL---G 127 (319)
T ss_pred CccCChHHHHHHHHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhh---c
Confidence 3566665542 1222233444455677999999999985433322 1 1234689999999999999998872 1
Q ss_pred CCCcE--EEEEccCCcC
Q 044572 349 VDGNI--SWHNADNSIE 363 (457)
Q Consensus 349 ~~~nv--~~~~~d~~~~ 363 (457)
....+ .-++||-.+.
T Consensus 128 ~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 128 NFSHVRCAGLLGTYDDG 144 (319)
T ss_pred cCCCeEEEEEEecHHHH
Confidence 12334 4478886553
No 263
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=94.12 E-value=0.7 Score=45.48 Aligned_cols=101 Identities=16% Similarity=0.136 Sum_probs=56.4
Q ss_pred CeEEEEccccc-HHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEEC
Q 044572 300 ASVTDLYAGAG-VIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVD 377 (457)
Q Consensus 300 ~~vLDl~cG~G-~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~D 377 (457)
.+|+=+|||.= ..++.+|+..+ ...|+++|++++|++.+++=.+.. .+...+++|+++|+.+.... ...||+|++-
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~-~~L~~~m~f~~~d~~~~~~d-l~~~DvV~lA 199 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASD-LGLSKRMSFITADVLDVTYD-LKEYDVVFLA 199 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH----HH-SSEEEEES-GGGG-GG-----SEEEE-
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhc-ccccCCeEEEecchhccccc-cccCCEEEEh
Confidence 48998888844 55666765422 347999999999999998765511 12346799999998765433 3589999884
Q ss_pred CCCCC----ccHHHHHHHHhcCCCCcEEEE
Q 044572 378 PPRKG----LDSSLVHALQSIGSAERKAKS 403 (457)
Q Consensus 378 PPR~G----l~~~v~~~l~~~~~~~~ivyv 403 (457)
-= .| -..++++.|.+.-+++.++.+
T Consensus 200 al-Vg~~~e~K~~Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 200 AL-VGMDAEPKEEILEHLAKHMAPGARLVV 228 (276)
T ss_dssp TT--S----SHHHHHHHHHHHS-TTSEEEE
T ss_pred hh-cccccchHHHHHHHHHhhCCCCcEEEE
Confidence 32 23 334678888664334444443
No 264
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=93.84 E-value=1.1 Score=42.96 Aligned_cols=133 Identities=13% Similarity=0.185 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCC
Q 044572 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNS 361 (457)
Q Consensus 282 ~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~ 361 (457)
.+..+..++.|..+- .+.+ |+.|+||=-++-.+.+. ..++.+.|..++=....+.|... ..+++..++|-+
T Consensus 74 pa~l~~yl~~i~~lN-~~~~-l~~YpGSP~lA~~llR~--qDRl~l~ELHp~D~~~L~~~f~~-----d~~vrv~~~DG~ 144 (279)
T COG2961 74 PAELEPYLDAVRQLN-PGGG-LRYYPGSPLLARQLLRE--QDRLVLTELHPSDAPLLRNNFAG-----DRRVRVLRGDGF 144 (279)
T ss_pred hHHHHHHHHHHHHhC-CCCC-cccCCCCHHHHHHHcch--hceeeeeecCccHHHHHHHHhCC-----CcceEEEecCcH
Confidence 566677777777653 3444 99999999999888753 57999999999988888887653 468999999987
Q ss_pred cCccccc---CCccEEEECCCCCCcc--HHHHHHHH----hcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhcc
Q 044572 362 IEPLSWL---VGSDVLVVDPPRKGLD--SSLVHALQ----SIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASV 428 (457)
Q Consensus 362 ~~~~~~~---~~~D~vi~DPPR~Gl~--~~v~~~l~----~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~~ 428 (457)
..+...+ ++=.+|++|||..--+ ..+++.|. +....--.++.= |.-....+.|...+.....
T Consensus 145 ~~l~a~LPP~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYP-----ik~r~~~~~f~~~L~~~~i 215 (279)
T COG2961 145 LALKAHLPPKERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAIWYP-----IKDRRQIRRFLRALEALGI 215 (279)
T ss_pred HHHhhhCCCCCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEEEEe-----ecchHHHHHHHHHHhhcCc
Confidence 6544332 2346999999964221 13444443 343222233333 4444556667666555543
No 265
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=93.78 E-value=0.23 Score=47.15 Aligned_cols=82 Identities=18% Similarity=0.156 Sum_probs=52.2
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc-cc---cCCccE
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL-SW---LVGSDV 373 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~-~~---~~~~D~ 373 (457)
++-++||+|-|.-.|==.+..+--.=+-+|-|+++.+++.|+.++..|. +....++...-.-.+.+. .. .+.||+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~-~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANP-GLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCc-chhhheeEEeccCccccccccccccceeee
Confidence 3457899987776542222211001257899999999999999998853 344556665433222222 11 257999
Q ss_pred EEECCCC
Q 044572 374 LVVDPPR 380 (457)
Q Consensus 374 vi~DPPR 380 (457)
++.|||-
T Consensus 157 tlCNPPF 163 (292)
T COG3129 157 TLCNPPF 163 (292)
T ss_pred EecCCCc
Confidence 9999994
No 266
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=93.62 E-value=0.29 Score=47.25 Aligned_cols=130 Identities=18% Similarity=0.232 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC
Q 044572 284 AFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE 363 (457)
Q Consensus 284 ~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~ 363 (457)
.....++.+..+-..+. |..|-||=.++..+.+. ..+.+..|..++..+..++|.+. ..++++++.|.++.
T Consensus 45 ~l~~yl~~v~~~n~~~~--l~~YPGSP~ia~~llR~--qDrl~l~ELHp~d~~~L~~~~~~-----~~~v~v~~~DG~~~ 115 (245)
T PF04378_consen 45 ALQPYLDAVRALNPDGE--LRFYPGSPAIAARLLRE--QDRLVLFELHPQDFEALKKNFRR-----DRRVRVHHRDGYEG 115 (245)
T ss_dssp GGHHHHHHHHHHSSSSS----EEE-HHHHHHHHS-T--TSEEEEE--SHHHHHHHTTS--T-----TS-EEEE-S-HHHH
T ss_pred HHHHHHHHHHHhccCCC--cCcCCCCHHHHHHhCCc--cceEEEEecCchHHHHHHHHhcc-----CCccEEEeCchhhh
Confidence 33445555555432333 88999999999998854 57999999999999988887654 35899999998875
Q ss_pred cccccC---CccEEEECCCCCCccH------HHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhc
Q 044572 364 PLSWLV---GSDVLVVDPPRKGLDS------SLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEAS 427 (457)
Q Consensus 364 ~~~~~~---~~D~vi~DPPR~Gl~~------~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~ 427 (457)
+..... +--+|++|||+.--++ .+.+++.+....--+|+-= +......+.|...+.+..
T Consensus 116 l~allPP~~rRglVLIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~iWYP-----i~~~~~~~~~~~~l~~~~ 183 (245)
T PF04378_consen 116 LKALLPPPERRGLVLIDPPYEQKDDYQRVVDALAKALKRWPTGVYAIWYP-----IKDRERVDRFLRALKALG 183 (245)
T ss_dssp HHHH-S-TTS-EEEEE-----STTHHHHHHHHHHHHHHH-TTSEEEEEEE-----ESSHHHHHHHHHHHHHH-
T ss_pred hhhhCCCCCCCeEEEECCCCCCchHHHHHHHHHHHHHHhcCCcEEEEEee-----cccHHHHHHHHHHHHhcC
Confidence 544332 3459999999743222 2344444553222333332 333444566666555443
No 267
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=93.33 E-value=0.41 Score=51.30 Aligned_cols=106 Identities=21% Similarity=0.098 Sum_probs=62.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhC--C--CCEEEEEeCCHHHHHHHHHHHhhCCCCC
Q 044572 274 PSSFGQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAAR--K--CRSVKCVEINKESQLSFEKTVSRLPKSV 349 (457)
Q Consensus 274 ~~~FfQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~--~--~~~V~gVE~~~~av~~A~~Na~~~~~~~ 349 (457)
.+.||. -+...+.+.+.+.....++..+.|++||||.+-+...... + ...++|-|....+...++.|....+.+
T Consensus 194 ~g~~~T-p~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~- 271 (501)
T TIGR00497 194 GGEFFT-PQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNID- 271 (501)
T ss_pred CceeeC-cHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCC-
Confidence 344444 3445444433222211246789999999999877654321 1 246999999999999999997542211
Q ss_pred CCcEEEEEccCCcCcccc-cCCccEEEECCCCC
Q 044572 350 DGNISWHNADNSIEPLSW-LVGSDVLVVDPPRK 381 (457)
Q Consensus 350 ~~nv~~~~~d~~~~~~~~-~~~~D~vi~DPPR~ 381 (457)
.+......+|........ ...||+|+.|||..
T Consensus 272 ~~t~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~ 304 (501)
T TIGR00497 272 YANFNIINADTLTTKEWENENGFEVVVSNPPYS 304 (501)
T ss_pred ccccCcccCCcCCCccccccccCCEEeecCCcc
Confidence 122333345543321111 23699999999953
No 268
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=93.12 E-value=0.1 Score=50.45 Aligned_cols=51 Identities=20% Similarity=0.279 Sum_probs=36.7
Q ss_pred HHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHH
Q 044572 287 ILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339 (457)
Q Consensus 287 ~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~ 339 (457)
+|+.+|.+.++ +..+++|+|||+|+.++.+... ...|+.-|+++..+...+
T Consensus 7 ~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~--~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 7 KLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQP--GKRVIINDINPDLINFWK 59 (260)
T ss_dssp GGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC-----SSEEEEEES-HHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCEEEEEecchhHHHHHhccc--ccceeeeechHHHHHHHH
Confidence 45667777776 5889999999999999888653 469999999998877665
No 269
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=92.73 E-value=0.22 Score=47.25 Aligned_cols=85 Identities=11% Similarity=0.036 Sum_probs=57.7
Q ss_pred HHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc
Q 044572 285 FDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP 364 (457)
Q Consensus 285 ~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~ 364 (457)
..++.+++.+.-+.-..++|+|||.|.++-++-.. +..+++-+|.|..|++.++.. +. +. -.+.+..+|-+...
T Consensus 59 g~rlaDrvfD~kk~fp~a~diGcs~G~v~rhl~~e-~vekli~~DtS~~M~~s~~~~-qd---p~-i~~~~~v~DEE~Ld 132 (325)
T KOG2940|consen 59 GDRLADRVFDCKKSFPTAFDIGCSLGAVKRHLRGE-GVEKLIMMDTSYDMIKSCRDA-QD---PS-IETSYFVGDEEFLD 132 (325)
T ss_pred HHHHHHHHHHHhhhCcceeecccchhhhhHHHHhc-chhheeeeecchHHHHHhhcc-CC---Cc-eEEEEEecchhccc
Confidence 34555555554345678999999999999998864 578999999999999887753 22 11 13556667754332
Q ss_pred ccccCCccEEEE
Q 044572 365 LSWLVGSDVLVV 376 (457)
Q Consensus 365 ~~~~~~~D~vi~ 376 (457)
-..+.+|+||.
T Consensus 133 -f~ens~DLiis 143 (325)
T KOG2940|consen 133 -FKENSVDLIIS 143 (325)
T ss_pred -ccccchhhhhh
Confidence 22356887754
No 270
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=92.71 E-value=0.59 Score=46.21 Aligned_cols=89 Identities=11% Similarity=0.122 Sum_probs=64.9
Q ss_pred HHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCc
Q 044572 286 DILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSI 362 (457)
Q Consensus 286 ~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~ 362 (457)
..|++.+++.+. ++...+|.-=|.|+-+-.+....+ .++++|+|.++.|++.|++..... .+++.++++.-..
T Consensus 9 pVLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~----~~r~~~v~~~F~~ 84 (314)
T COG0275 9 PVLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF----DGRVTLVHGNFAN 84 (314)
T ss_pred chHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc----CCcEEEEeCcHHH
Confidence 356677777654 678999999999999988887643 357999999999999999887652 3689999987543
Q ss_pred Ccccc----cCCccEEEECC
Q 044572 363 EPLSW----LVGSDVLVVDP 378 (457)
Q Consensus 363 ~~~~~----~~~~D~vi~DP 378 (457)
..... ...+|=|++|-
T Consensus 85 l~~~l~~~~i~~vDGiL~DL 104 (314)
T COG0275 85 LAEALKELGIGKVDGILLDL 104 (314)
T ss_pred HHHHHHhcCCCceeEEEEec
Confidence 22111 23567676654
No 271
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=92.63 E-value=0.4 Score=47.28 Aligned_cols=48 Identities=29% Similarity=0.325 Sum_probs=40.9
Q ss_pred hCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572 295 YVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR 344 (457)
Q Consensus 295 ~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~ 344 (457)
+...++.|||-|+|+|+.++.+... .+..+|+|++++-++.+.+-...
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa~~~--~r~~ig~e~~~~y~~~~~~r~~~ 266 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAAKNL--GRRFIGIEINPEYVEVALKRLQE 266 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHHHHc--CCceEEEecCHHHHHHHHHHHHh
Confidence 3347999999999999999988765 35899999999999999887664
No 272
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=92.50 E-value=0.86 Score=46.11 Aligned_cols=95 Identities=17% Similarity=0.053 Sum_probs=63.6
Q ss_pred CCCCCeEEEEcc-cccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEE
Q 044572 296 VPYGASVTDLYA-GAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVL 374 (457)
Q Consensus 296 ~~~~~~vLDl~c-G~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~v 374 (457)
+.+|++|+=.|+ |.|.+++.+|+..+ .+|+++|++++-.+.|++= +. + .++.+...+......+.+|+|
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~l----GA---d--~~i~~~~~~~~~~~~~~~d~i 233 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKL----GA---D--HVINSSDSDALEAVKEIADAI 233 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHh----CC---c--EEEEcCCchhhHHhHhhCcEE
Confidence 347888776666 56679999998666 7999999999999988752 21 1 444433222222222348988
Q ss_pred EECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 375 VVDPPRKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 375 i~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
|.-=| ...+-..+..++..++++.+.
T Consensus 234 i~tv~----~~~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 234 IDTVG----PATLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred EECCC----hhhHHHHHHHHhcCCEEEEEC
Confidence 77444 345677777777778888875
No 273
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=91.89 E-value=1.5 Score=41.07 Aligned_cols=106 Identities=16% Similarity=0.102 Sum_probs=69.3
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCC----CCCCcEEEEEccCCcCcccccCC---c
Q 044572 299 GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPK----SVDGNISWHNADNSIEPLSWLVG---S 371 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~----~~~~nv~~~~~d~~~~~~~~~~~---~ 371 (457)
.-.+.|+|||-|.+-+.|+....-.-++|.||--..-+..+..++.++. +...|+.....++..++.++... .
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 4569999999999999999877667899999988887777776665432 23467888888888876654321 1
Q ss_pred -c-EEEECCCC-------CCccHHHHHHHHhcCCCCcEEEEe
Q 044572 372 -D-VLVVDPPR-------KGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 372 -D-~vi~DPPR-------~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
+ ..+=||-- .-+...++....-....++++|..
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yti 182 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTI 182 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEE
Confidence 2 22334441 122223333333333477888875
No 274
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=91.84 E-value=0.49 Score=48.27 Aligned_cols=104 Identities=17% Similarity=0.083 Sum_probs=69.8
Q ss_pred CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhC-------CCCCCCcEEEEEccCCcCc--ccc
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRL-------PKSVDGNISWHNADNSIEP--LSW 367 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~-------~~~~~~nv~~~~~d~~~~~--~~~ 367 (457)
.+++...|||+|+|.....+|..+++++-+|+|+....-+.|..|.+.+ +.. ...++.++++....- ..+
T Consensus 191 g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~-~~~~~~i~gsf~~~~~v~eI 269 (419)
T KOG3924|consen 191 GPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKK-PNKIETIHGSFLDPKRVTEI 269 (419)
T ss_pred CCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCC-cCceeecccccCCHHHHHHH
Confidence 4788999999999999999888888999999999988888887765432 211 234777888765421 112
Q ss_pred cCCccEEEECCCCCC--ccHHHHHHHHhcCCCCcEE
Q 044572 368 LVGSDVLVVDPPRKG--LDSSLVHALQSIGSAERKA 401 (457)
Q Consensus 368 ~~~~D~vi~DPPR~G--l~~~v~~~l~~~~~~~~iv 401 (457)
....++|++|-=+.. +..++-+.+..++..-+|+
T Consensus 270 ~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIi 305 (419)
T KOG3924|consen 270 QTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRII 305 (419)
T ss_pred hhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEe
Confidence 245778888665442 2223445666676444444
No 275
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=91.56 E-value=0.47 Score=46.53 Aligned_cols=130 Identities=9% Similarity=0.075 Sum_probs=82.7
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHHhhC-C----CCCeEEEEccccc----HHHHHHHhhCC-----CCEEEEEeCCHHHH
Q 044572 270 ISLAPSSFGQANTRAFDILLRKLQKYV-P----YGASVTDLYAGAG----VIGLSLAAARK-----CRSVKCVEINKESQ 335 (457)
Q Consensus 270 ~~i~~~~FfQ~n~~~~~~l~~~i~~~~-~----~~~~vLDl~cG~G----~~sl~lA~~~~-----~~~V~gVE~~~~av 335 (457)
+.+.-+.||. |++..+.+-+.+...+ . ..-+||-++|+|| ++++.+....+ .-+|+|.|+|..++
T Consensus 64 ltin~T~FFR-~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L 142 (268)
T COG1352 64 LTINVTEFFR-DPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVL 142 (268)
T ss_pred hhhccchhcc-CcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHH
Confidence 4456688888 5777788888777633 1 1357999999999 57777766542 24799999999999
Q ss_pred HHHHH------HHhh-C------------CC-------CCCCcEEEEEccCCcCcccccCCccEEEE-------CCCCCC
Q 044572 336 LSFEK------TVSR-L------------PK-------SVDGNISWHNADNSIEPLSWLVGSDVLVV-------DPPRKG 382 (457)
Q Consensus 336 ~~A~~------Na~~-~------------~~-------~~~~nv~~~~~d~~~~~~~~~~~~D~vi~-------DPPR~G 382 (457)
+.|++ +... . .. ..-.+|.|.+.|+.+... ..+.||+|++ |.|.
T Consensus 143 ~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLIYFd~~~-- 219 (268)
T COG1352 143 EKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLIYFDEET-- 219 (268)
T ss_pred HHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEEeeCHHH--
Confidence 99973 2210 0 00 011346666666654332 3456998765 4432
Q ss_pred ccHHHHHHHHhcCCCCcEEEEe
Q 044572 383 LDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 383 l~~~v~~~l~~~~~~~~ivyvs 404 (457)
..++++.+...-.+++++++.
T Consensus 220 -q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 220 -QERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred -HHHHHHHHHHHhCCCCEEEEc
Confidence 224555555544588888885
No 276
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=90.98 E-value=6.3 Score=35.66 Aligned_cols=107 Identities=15% Similarity=0.116 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCC
Q 044572 282 TRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNS 361 (457)
Q Consensus 282 ~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~ 361 (457)
.+.++.|.+.+.+...++.+|+=++|=+-...+.-. ...-.+++..|.+..--. . + .+ .|+.-|-.
T Consensus 9 ~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~-~~~~~~~~Lle~D~RF~~--------~--~--~~-~F~fyD~~ 74 (162)
T PF10237_consen 9 DETAEFLARELLDGALDDTRIACLSTPSLYEALKKE-SKPRIQSFLLEYDRRFEQ--------F--G--GD-EFVFYDYN 74 (162)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhh-cCCCccEEEEeecchHHh--------c--C--Cc-ceEECCCC
Confidence 455677778777766567899988888777776651 122358999999987532 1 1 12 34443433
Q ss_pred c--Cc-ccccCCccEEEECCCCCCccHHHH----HHHHhcCCC-CcEEEEe
Q 044572 362 I--EP-LSWLVGSDVLVVDPPRKGLDSSLV----HALQSIGSA-ERKAKSL 404 (457)
Q Consensus 362 ~--~~-~~~~~~~D~vi~DPPR~Gl~~~v~----~~l~~~~~~-~~ivyvs 404 (457)
. .+ ..+...+|+||+|||- +..++. +.++.+..+ .++++++
T Consensus 75 ~p~~~~~~l~~~~d~vv~DPPF--l~~ec~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 75 EPEELPEELKGKFDVVVIDPPF--LSEECLTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred ChhhhhhhcCCCceEEEECCCC--CCHHHHHHHHHHHHHHhCccceEEEec
Confidence 2 12 2234689999999998 555554 556555433 3555543
No 277
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=90.54 E-value=3.1 Score=39.26 Aligned_cols=102 Identities=16% Similarity=0.258 Sum_probs=66.3
Q ss_pred CCCeEEEEccccc----HHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCC-cCcccccCCcc
Q 044572 298 YGASVTDLYAGAG----VIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNS-IEPLSWLVGSD 372 (457)
Q Consensus 298 ~~~~vLDl~cG~G----~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~-~~~~~~~~~~D 372 (457)
..+.+++.+|+-| +++|.+|.+.-..++++|-.+++.+...++.+... +..+-++|+.|+.. +.+.. ....|
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~--~~~~~vEfvvg~~~e~~~~~-~~~iD 117 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEA--GLSDVVEFVVGEAPEEVMPG-LKGID 117 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhc--cccccceEEecCCHHHHHhh-ccCCC
Confidence 3567899977644 45555555433568999999999888777777653 23345799999854 34433 46789
Q ss_pred EEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 373 VLVVDPPRKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 373 ~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
.+++|==+.....++++.+ ++. +.+-|.|.
T Consensus 118 F~vVDc~~~d~~~~vl~~~-~~~-~~GaVVV~ 147 (218)
T PF07279_consen 118 FVVVDCKREDFAARVLRAA-KLS-PRGAVVVC 147 (218)
T ss_pred EEEEeCCchhHHHHHHHHh-ccC-CCceEEEE
Confidence 9999987654443455543 343 45566664
No 278
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=89.39 E-value=0.42 Score=52.27 Aligned_cols=13 Identities=15% Similarity=0.365 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHhh
Q 044572 332 KESQLSFEKTVSR 344 (457)
Q Consensus 332 ~~av~~A~~Na~~ 344 (457)
...+...+.|++.
T Consensus 900 kK~~~~m~~~ik~ 912 (1102)
T KOG1924|consen 900 KKNLQQMENQIKK 912 (1102)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 279
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=89.31 E-value=0.85 Score=46.36 Aligned_cols=60 Identities=22% Similarity=0.215 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH
Q 044572 279 QANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340 (457)
Q Consensus 279 Q~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~ 340 (457)
|-.-+....+++.|.++. +-+.|+|+|+|-|.++-.++-..| -+|+|||.|..+.+.|++
T Consensus 135 qhEi~~lselvSsi~~f~-gi~~vvD~GaG~G~LSr~lSl~y~-lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 135 QHEIRRLSELVSSISDFT-GIDQVVDVGAGQGHLSRFLSLGYG-LSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHHHHHHHHhhc-CCCeeEEcCCCchHHHHHHhhccC-ceEEEeccchHHHHHHHH
Confidence 433333444455555543 467899999999999999986543 589999999888877654
No 280
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=89.01 E-value=1 Score=39.67 Aligned_cols=54 Identities=7% Similarity=0.021 Sum_probs=37.8
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccC-CccEEEECCC
Q 044572 324 SVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLV-GSDVLVVDPP 379 (457)
Q Consensus 324 ~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~-~~D~vi~DPP 379 (457)
+|+|.||-++|++.+++.++.. +..++++++..+=+........ ..|+++.|=-
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~--~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG 55 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEA--GLEDRVTLILDSHENLDEYIPEGPVDAAIFNLG 55 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHT--T-GSGEEEEES-GGGGGGT--S--EEEEEEEES
T ss_pred CEEEEECHHHHHHHHHHHHHhc--CCCCcEEEEECCHHHHHhhCccCCcCEEEEECC
Confidence 6999999999999999999874 3446899998775554322233 6899999864
No 281
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=88.28 E-value=5.9 Score=38.10 Aligned_cols=82 Identities=18% Similarity=0.087 Sum_probs=56.9
Q ss_pred CCCCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc--cccCCcc
Q 044572 296 VPYGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL--SWLVGSD 372 (457)
Q Consensus 296 ~~~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~--~~~~~~D 372 (457)
+++|.+||-|++++|+.--+.+...+ -.-|++||.++.+=.+.--=+++ -.||--|.-|+..-.. -+..-.|
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk-----RtNiiPIiEDArhP~KYRmlVgmVD 228 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK-----RTNIIPIIEDARHPAKYRMLVGMVD 228 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc-----cCCceeeeccCCCchheeeeeeeEE
Confidence 45899999999999998888887655 35799999998875554322222 2567777778754211 1124579
Q ss_pred EEEECCCCCC
Q 044572 373 VLVVDPPRKG 382 (457)
Q Consensus 373 ~vi~DPPR~G 382 (457)
+||.|=+...
T Consensus 229 vIFaDvaqpd 238 (317)
T KOG1596|consen 229 VIFADVAQPD 238 (317)
T ss_pred EEeccCCCch
Confidence 9999987543
No 282
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=87.27 E-value=1.9 Score=43.87 Aligned_cols=98 Identities=20% Similarity=0.194 Sum_probs=64.5
Q ss_pred CCCeEEEEcccc-cHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEc-cCCcCccccc--CCccE
Q 044572 298 YGASVTDLYAGA-GVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNA-DNSIEPLSWL--VGSDV 373 (457)
Q Consensus 298 ~~~~vLDl~cG~-G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~-d~~~~~~~~~--~~~D~ 373 (457)
.+.+|+=+|||. |.+++.+|+..|+++|+++|.+++=++.|++-... +.+..... ++........ ..+|+
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~------~~~~~~~~~~~~~~~~~~t~g~g~D~ 241 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA------DVVVNPSEDDAGAEILELTGGRGADV 241 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC------eEeecCccccHHHHHHHHhCCCCCCE
Confidence 344888888884 77778888888999999999999999999872111 11111111 1111111122 25899
Q ss_pred EEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 374 LVVDPPRKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 374 vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
+|- ..|....+.+++...++.+++++++
T Consensus 242 vie---~~G~~~~~~~ai~~~r~gG~v~~vG 269 (350)
T COG1063 242 VIE---AVGSPPALDQALEALRPGGTVVVVG 269 (350)
T ss_pred EEE---CCCCHHHHHHHHHHhcCCCEEEEEe
Confidence 885 5675555666777777788999987
No 283
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=86.96 E-value=0.18 Score=47.11 Aligned_cols=58 Identities=24% Similarity=0.234 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHh-hCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH
Q 044572 281 NTRAFDILLRKLQK-YVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340 (457)
Q Consensus 281 n~~~~~~l~~~i~~-~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~ 340 (457)
..++..+++..=.. +-.+..++||||+|-|-++..++.. +.+|+|-|.|..|....++
T Consensus 94 Se~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~--feevyATElS~tMr~rL~k 152 (288)
T KOG3987|consen 94 SEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPT--FEEVYATELSWTMRDRLKK 152 (288)
T ss_pred cHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcch--HHHHHHHHhhHHHHHHHhh
Confidence 35666666542211 1113478999999999999999975 6699999999999877654
No 284
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.30 E-value=1.4 Score=43.97 Aligned_cols=98 Identities=17% Similarity=0.065 Sum_probs=63.1
Q ss_pred CCCCCeEEEEccc-ccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccC--Cc---Cccccc-
Q 044572 296 VPYGASVTDLYAG-AGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADN--SI---EPLSWL- 368 (457)
Q Consensus 296 ~~~~~~vLDl~cG-~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~--~~---~~~~~~- 368 (457)
++.|.+||=+|+| +|..++..|+..|+++|+.+|.++.-++.|++ .-. +.+....... .+ ...+..
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga------~~~~~~~~~~~~~~~~~~v~~~~g 239 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGA------TVTDPSSHKSSPQELAELVEKALG 239 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCC------eEEeeccccccHHHHHHHHHhhcc
Confidence 3579999999998 58888889988899999999999999999987 321 2222222111 11 111111
Q ss_pred -CCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEE
Q 044572 369 -VGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKS 403 (457)
Q Consensus 369 -~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyv 403 (457)
..+|+.|- -+|+...+..++...+..+.++.+
T Consensus 240 ~~~~d~~~d---CsG~~~~~~aai~a~r~gGt~vlv 272 (354)
T KOG0024|consen 240 KKQPDVTFD---CSGAEVTIRAAIKATRSGGTVVLV 272 (354)
T ss_pred ccCCCeEEE---ccCchHHHHHHHHHhccCCEEEEe
Confidence 23777663 467766666666666645554444
No 285
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=85.49 E-value=1 Score=44.19 Aligned_cols=38 Identities=26% Similarity=0.248 Sum_probs=33.5
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHH
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~ 336 (457)
.+++|||||||+|.-++.+... +..+|...|.|.+.++
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~-~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVK-GAVSVHFQDFNAEVLR 153 (282)
T ss_pred cCceeEecCCcccccchhhhhh-ccceeeeEecchhhee
Confidence 6899999999999999998864 4578999999999884
No 286
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=83.24 E-value=4.4 Score=44.97 Aligned_cols=106 Identities=12% Similarity=0.037 Sum_probs=63.8
Q ss_pred CCeEEEEcccccHHHHHHHhhC-------C-----CCEEEEEeCCHHHHHHHHHHH--------------hh-----CCC
Q 044572 299 GASVTDLYAGAGVIGLSLAAAR-------K-----CRSVKCVEINKESQLSFEKTV--------------SR-----LPK 347 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~~-------~-----~~~V~gVE~~~~av~~A~~Na--------------~~-----~~~ 347 (457)
.-+|+|+|=|+|.-.+.+.+.. . --+++++|..+-..+..++-. +. .+.
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 3579999999998655555322 0 137999998653322222211 00 000
Q ss_pred ------CCCCcEEEEEccCCcCcccccCCccEEEECC--CCCC---ccHHHHHHHHhcCCCCcEEEEe
Q 044572 348 ------SVDGNISWHNADNSIEPLSWLVGSDVLVVDP--PRKG---LDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 348 ------~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DP--PR~G---l~~~v~~~l~~~~~~~~ivyvs 404 (457)
++.-+.+.+.||+.+.+.++...+|++++|+ |.+. -+.++.+.|.++..++..+..-
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 0011455778898876665545699999997 6543 2447888888776566555543
No 287
>PRK11524 putative methyltransferase; Provisional
Probab=82.64 E-value=1.6 Score=43.08 Aligned_cols=53 Identities=11% Similarity=0.087 Sum_probs=35.8
Q ss_pred cEEEEEccCCcCcccc-cCCccEEEECCCCCC-cc-----------------HHHHHHHHhcCCCCcEEEEe
Q 044572 352 NISWHNADNSIEPLSW-LVGSDVLVVDPPRKG-LD-----------------SSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 352 nv~~~~~d~~~~~~~~-~~~~D~vi~DPPR~G-l~-----------------~~v~~~l~~~~~~~~ivyvs 404 (457)
+.+++++|+.+.+..+ .+.+|+||+|||+.. .+ .+++..+.++..+++.+|+.
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4578999998865443 257999999999742 10 13445555544578888886
No 288
>PRK13699 putative methylase; Provisional
Probab=81.05 E-value=1.8 Score=41.30 Aligned_cols=28 Identities=14% Similarity=0.143 Sum_probs=22.1
Q ss_pred EEEEccCCcCccccc-CCccEEEECCCCC
Q 044572 354 SWHNADNSIEPLSWL-VGSDVLVVDPPRK 381 (457)
Q Consensus 354 ~~~~~d~~~~~~~~~-~~~D~vi~DPPR~ 381 (457)
++++||+.+.+..+. +.+|+||.|||+.
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~ 31 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYL 31 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcc
Confidence 678999987655442 5799999999984
No 289
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=80.21 E-value=3.8 Score=41.34 Aligned_cols=44 Identities=25% Similarity=0.241 Sum_probs=38.2
Q ss_pred CCCCeEEEEcc-cccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH
Q 044572 297 PYGASVTDLYA-GAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340 (457)
Q Consensus 297 ~~~~~vLDl~c-G~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~ 340 (457)
++|++|.=.|| |.|.-++.-|+..++.++++||++++-++.|++
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~ 228 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK 228 (366)
T ss_pred CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh
Confidence 46888777777 688888888988999999999999999999875
No 290
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=80.15 E-value=1.3 Score=46.53 Aligned_cols=102 Identities=19% Similarity=0.080 Sum_probs=62.7
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc------cCCcc
Q 044572 299 GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW------LVGSD 372 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~------~~~~D 372 (457)
+..+|=++=|.|.+...+-.+.+..++++||++|++++.|+.+..... ..+...+-.|..+.+.+. ...||
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q---~~r~~V~i~dGl~~~~~~~k~~~~~~~~d 372 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ---SDRNKVHIADGLDFLQRTAKSQQEDICPD 372 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh---hhhhhhhHhhchHHHHHHhhccccccCCc
Confidence 445666777778887777655666789999999999999998864311 112233334444333221 23699
Q ss_pred EEEEC-----------CCCCCccHHHHHHHHhcCCCCcEEEE
Q 044572 373 VLVVD-----------PPRKGLDSSLVHALQSIGSAERKAKS 403 (457)
Q Consensus 373 ~vi~D-----------PPR~Gl~~~v~~~l~~~~~~~~ivyv 403 (457)
++++| ||-.=+...++..++..-+++++..+
T Consensus 373 vl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~i 414 (482)
T KOG2352|consen 373 VLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFII 414 (482)
T ss_pred EEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEE
Confidence 99987 33223344566666665556665444
No 291
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=79.94 E-value=5.5 Score=38.60 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=31.3
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 044572 299 GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSR 344 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~ 344 (457)
..+||+||+|+|.-|+.+|...+ ..|+--|. +..++..+.|...
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~-~~v~ltD~-~~~~~~L~~~~~~ 130 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLG-AEVVLTDL-PKVVENLKFNRDK 130 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhc-ceeccCCc-hhhHHHHHHhhhh
Confidence 45799999999999999997543 35555554 5556666666544
No 292
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=79.50 E-value=9.9 Score=31.48 Aligned_cols=88 Identities=13% Similarity=0.089 Sum_probs=53.9
Q ss_pred cccccHHHHHHHhh--CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC--cccc-cCCccEEEECCCC
Q 044572 306 YAGAGVIGLSLAAA--RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE--PLSW-LVGSDVLVVDPPR 380 (457)
Q Consensus 306 ~cG~G~~sl~lA~~--~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~--~~~~-~~~~D~vi~DPPR 380 (457)
=||.|.+|..+++. .+...|+.||.+++.++.++.. .+.++.||..+. +.+. ..+.+.||+.-+.
T Consensus 3 I~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~ 72 (116)
T PF02254_consen 3 IIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----------GVEVIYGDATDPEVLERAGIEKADAVVILTDD 72 (116)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----------TSEEEES-TTSHHHHHHTTGGCESEEEEESSS
T ss_pred EEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----------ccccccccchhhhHHhhcCccccCEEEEccCC
Confidence 47888999888863 2234899999999998776531 257899998763 1111 2467877776554
Q ss_pred CCccHHHHHHHHhcCCCCcEEEE
Q 044572 381 KGLDSSLVHALQSIGSAERKAKS 403 (457)
Q Consensus 381 ~Gl~~~v~~~l~~~~~~~~ivyv 403 (457)
....-.+...++++.+..+++..
T Consensus 73 d~~n~~~~~~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 73 DEENLLIALLARELNPDIRIIAR 95 (116)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCeEEEE
Confidence 32222455566666544455444
No 293
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=79.39 E-value=4.1 Score=41.67 Aligned_cols=81 Identities=17% Similarity=0.118 Sum_probs=59.9
Q ss_pred CCCeEEEEcccccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc-cccCCccEEE
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL-SWLVGSDVLV 375 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~-~~~~~~D~vi 375 (457)
+|..|+|.+|--|.=+.++|.... -.+++|.|.+++=++..+.-+.. .+.++++...+|...... ........++
T Consensus 213 ~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~---ag~~~~~~~~~df~~t~~~~~~~~v~~iL 289 (413)
T KOG2360|consen 213 PGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKI---AGVSIVESVEGDFLNTATPEKFRDVTYIL 289 (413)
T ss_pred CCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHH---cCCCccccccccccCCCCcccccceeEEE
Confidence 689999999999999999886433 35899999999988888877765 345667777888665311 1113456899
Q ss_pred ECCCCC
Q 044572 376 VDPPRK 381 (457)
Q Consensus 376 ~DPPR~ 381 (457)
+||+-+
T Consensus 290 ~DpscS 295 (413)
T KOG2360|consen 290 VDPSCS 295 (413)
T ss_pred eCCCCC
Confidence 999954
No 294
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=79.26 E-value=5.2 Score=35.11 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=32.2
Q ss_pred EEccccc--HHHHHHH--hhCCCCEEEEEeCCHHHHHHHHHH--HhhCCCCCCCcEEEEEccC
Q 044572 304 DLYAGAG--VIGLSLA--AARKCRSVKCVEINKESQLSFEKT--VSRLPKSVDGNISWHNADN 360 (457)
Q Consensus 304 Dl~cG~G--~~sl~lA--~~~~~~~V~gVE~~~~av~~A~~N--a~~~~~~~~~nv~~~~~d~ 360 (457)
|+|++.| .....++ ......+|+++|.++..++..++| +..+. ....++++...+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~--~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALND--KDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTT--TSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcC--CCceEEEEEeec
Confidence 8999999 5555443 223346899999999999999999 66532 122355555433
No 295
>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]
Probab=78.83 E-value=0.98 Score=43.16 Aligned_cols=71 Identities=20% Similarity=0.300 Sum_probs=43.9
Q ss_pred CeEEEEcccccHH--HHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCC--CcEEEEEccCCcCcccccCCccEEE
Q 044572 300 ASVTDLYAGAGVI--GLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVD--GNISWHNADNSIEPLSWLVGSDVLV 375 (457)
Q Consensus 300 ~~vLDl~cG~G~~--sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~--~nv~~~~~d~~~~~~~~~~~~D~vi 375 (457)
-+||++|+|.|.. ++..|. -.+.-|-|+|++..|=+.-+.|-.. +.. .||+-+.. .++ . .-.+|++.
T Consensus 4 LrVlelysg~ggmhyal~~a~-ipaqiVaAiDvNtvANevY~~N~h~---~L~k~~~I~~lt~--kef-d--~l~~~m~l 74 (338)
T KOG0919|consen 4 LRVLELYSGHGGMHYALEDAQ-IPAQIVAAIDVNTVANEVYAHNYHS---NLVKTRNIQSLTV--KEF-D--KLQANMLL 74 (338)
T ss_pred eehhhhhhccchhhhhHhhhc-CchhhEEEEecchhHHHHHhcCccc---chhhccccceeeH--hhh-h--hcccceEe
Confidence 3799999999985 444454 2355788999999987777666221 111 12222221 111 1 12578999
Q ss_pred ECCC
Q 044572 376 VDPP 379 (457)
Q Consensus 376 ~DPP 379 (457)
+.||
T Consensus 75 MSPp 78 (338)
T KOG0919|consen 75 MSPP 78 (338)
T ss_pred eCCC
Confidence 9999
No 296
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=77.43 E-value=18 Score=36.32 Aligned_cols=96 Identities=14% Similarity=0.035 Sum_probs=53.8
Q ss_pred CCCeEEEEcc-cccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcE-EEEEccCCcCcccccCCccEEE
Q 044572 298 YGASVTDLYA-GAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNI-SWHNADNSIEPLSWLVGSDVLV 375 (457)
Q Consensus 298 ~~~~vLDl~c-G~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv-~~~~~d~~~~~~~~~~~~D~vi 375 (457)
++++||=.|| |.|.+++.+|+..|+++|+++|.+++-++.|++ ++ .+.+ .....+..+... ..+.+|+||
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lG---a~~vi~~~~~~~~~~~~-~~g~~D~vi 240 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MG---ADKLVNPQNDDLDHYKA-EKGYFDVSF 240 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cC---CcEEecCCcccHHHHhc-cCCCCCEEE
Confidence 5788876654 344555666766677789999999998887764 21 1111 111111111111 113488776
Q ss_pred ECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 376 VDPPRKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 376 ~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
|. .|-...+...+..+++.++++.+.
T Consensus 241 -d~--~G~~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 241 -EV--SGHPSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred -EC--CCCHHHHHHHHHHhhcCCEEEEEc
Confidence 54 333233445565666677777775
No 297
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=77.14 E-value=5.4 Score=39.81 Aligned_cols=74 Identities=15% Similarity=0.078 Sum_probs=48.0
Q ss_pred EEEcccccHHHHHHHhhC--CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc-ccc-----cCCccEE
Q 044572 303 TDLYAGAGVIGLSLAAAR--KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP-LSW-----LVGSDVL 374 (457)
Q Consensus 303 LDl~cG~G~~sl~lA~~~--~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~-~~~-----~~~~D~v 374 (457)
+|+|.|+- .++.+... ..=.-++.|++...+..|+.|...| |..+.+..++....+.+ ... ...||.+
T Consensus 107 iDIgtgas--ci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn--~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFc 182 (419)
T KOG2912|consen 107 IDIGTGAS--CIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQN--NLSSLIKVVKVEPQKTLLMDALKEESEIIYDFC 182 (419)
T ss_pred eeccCchh--hhHHhhhchhccceeeeeeccccccchhhcccccc--ccccceeeEEecchhhcchhhhccCccceeeEE
Confidence 67765554 44444210 0125789999999999999999884 45567777776443321 111 1249999
Q ss_pred EECCCC
Q 044572 375 VVDPPR 380 (457)
Q Consensus 375 i~DPPR 380 (457)
..|||-
T Consensus 183 McNPPF 188 (419)
T KOG2912|consen 183 MCNPPF 188 (419)
T ss_pred ecCCch
Confidence 999993
No 298
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=75.95 E-value=6.4 Score=39.78 Aligned_cols=88 Identities=14% Similarity=0.111 Sum_probs=60.8
Q ss_pred CeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE---
Q 044572 300 ASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV--- 376 (457)
Q Consensus 300 ~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~--- 376 (457)
...+|+|+|+|.++-.+... ..+|-+||.+...+..+..+.. ..|+.+.||.++.. ..-|+|++
T Consensus 179 ~~avDvGgGiG~v~k~ll~~--fp~ik~infdlp~v~~~a~~~~-------~gV~~v~gdmfq~~----P~~daI~mkWi 245 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSK--YPHIKGINFDLPFVLAAAPYLA-------PGVEHVAGDMFQDT----PKGDAIWMKWI 245 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHh--CCCCceeecCHHHHHhhhhhhc-------CCcceecccccccC----CCcCeEEEEee
Confidence 78999999999988888864 5589999999998887776653 12677888877643 34466655
Q ss_pred --CCCCCCccHHHHHHHHhc----CCCCcEEEEe
Q 044572 377 --DPPRKGLDSSLVHALQSI----GSAERKAKSL 404 (457)
Q Consensus 377 --DPPR~Gl~~~v~~~l~~~----~~~~~ivyvs 404 (457)
|=+ +++.++.|.++ .+.+.|+.+.
T Consensus 246 Lhdwt----DedcvkiLknC~~sL~~~GkIiv~E 275 (342)
T KOG3178|consen 246 LHDWT----DEDCVKILKNCKKSLPPGGKIIVVE 275 (342)
T ss_pred cccCC----hHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 332 34555555543 3456666665
No 299
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=75.54 E-value=33 Score=37.46 Aligned_cols=106 Identities=11% Similarity=-0.019 Sum_probs=62.7
Q ss_pred CCCeEEEEcccccHHHHHHHhhC--CCCEEEEEeCCHHHHHHHHHHHhhC-----CCCCCCcEEEEEccCCcCc--cccc
Q 044572 298 YGASVTDLYAGAGVIGLSLAAAR--KCRSVKCVEINKESQLSFEKTVSRL-----PKSVDGNISWHNADNSIEP--LSWL 368 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~--~~~~V~gVE~~~~av~~A~~Na~~~-----~~~~~~nv~~~~~d~~~~~--~~~~ 368 (457)
+|++|| +..|+|.+|..+++.. ...+|+++..+.+.++....+++.. +.....++.++.+|+.+.. ....
T Consensus 79 ~gKvVL-VTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL 157 (576)
T PLN03209 79 DEDLAF-VAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL 157 (576)
T ss_pred CCCEEE-EECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence 455666 6667888888876531 1247999999988776554443321 0001235889999998632 1223
Q ss_pred CCccEEEECCCCCCc---------------cHHHHHHHHhcCCCCcEEEEec
Q 044572 369 VGSDVLVVDPPRKGL---------------DSSLVHALQSIGSAERKAKSLS 405 (457)
Q Consensus 369 ~~~D~vi~DPPR~Gl---------------~~~v~~~l~~~~~~~~ivyvs~ 405 (457)
+..|+||..--.... ...+++++.... .+++|++|+
T Consensus 158 ggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~ag-VgRIV~VSS 208 (576)
T PLN03209 158 GNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAK-VNHFILVTS 208 (576)
T ss_pred cCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhC-CCEEEEEcc
Confidence 578988876421110 112344444443 689999985
No 300
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=75.20 E-value=7.5 Score=36.57 Aligned_cols=103 Identities=9% Similarity=-0.016 Sum_probs=49.4
Q ss_pred CCCeEEEEcccccHHHHHHHhh----CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc-----ccc
Q 044572 298 YGASVTDLYAGAGVIGLSLAAA----RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL-----SWL 368 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~----~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~-----~~~ 368 (457)
+-+.|+++|.-.|+-.+..|.. .+.++|+|||++-........ +.. -..++|++++||..+... ...
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~--e~h--p~~~rI~~i~Gds~d~~~~~~v~~~~ 107 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAI--ESH--PMSPRITFIQGDSIDPEIVDQVRELA 107 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GG--GG------TTEEEEES-SSSTHHHHTSGSS-
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHH--hhc--cccCceEEEECCCCCHHHHHHHHHhh
Confidence 3579999999998877766642 234699999996554322111 111 123689999999875311 111
Q ss_pred --CCccEEEECCCCCCcc-HHHHHHHHhcCCCCcEEEEe
Q 044572 369 --VGSDVLVVDPPRKGLD-SSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 369 --~~~D~vi~DPPR~Gl~-~~v~~~l~~~~~~~~ivyvs 404 (457)
....+||.|=--.--+ -..++....+-.++..+.|.
T Consensus 108 ~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 108 SPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp ---SSEEEEESS----SSHHHHHHHHHHT--TT-EEEET
T ss_pred ccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEE
Confidence 2455888887522111 02344455555566666664
No 301
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=74.51 E-value=3.9 Score=34.34 Aligned_cols=31 Identities=16% Similarity=0.124 Sum_probs=23.5
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCEEEEEeCC
Q 044572 299 GASVTDLYAGAGVIGLSLAAARKCRSVKCVEIN 331 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~ 331 (457)
-...+|+|||.|.+.-.|...+- .=+|+|.-
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy--~G~GiD~R 89 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGY--PGWGIDAR 89 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCC--Cccccccc
Confidence 45799999999999988886533 34677753
No 302
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=74.42 E-value=34 Score=32.61 Aligned_cols=115 Identities=16% Similarity=0.082 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCC
Q 044572 284 AFDILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNS 361 (457)
Q Consensus 284 ~~~~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~ 361 (457)
+-..+.++|.+.+. ..+.|++++-|.|+++-.+.. +++.+...||++...+.-.+.-++.. ..+...+.+|+.
T Consensus 34 MD~~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~-a~~~RL~vVE~D~RFip~LQ~L~EAa----~~~~~IHh~D~L 108 (326)
T KOG0821|consen 34 MDLRLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILN-ADVARLLVVEKDTRFIPGLQMLSEAA----PGKLRIHHGDVL 108 (326)
T ss_pred hhhHHHHHHHHhccccccceeEEecCCCCchhHHHHh-cchhheeeeeeccccChHHHHHhhcC----CcceEEeccccc
Confidence 33455556655443 467899999999999998886 56789999999998887776655542 236677788875
Q ss_pred cCc-----c-----cccCC-c-cEEEECCCCCCccHHHHHHHHhcC-CCCcEEEE
Q 044572 362 IEP-----L-----SWLVG-S-DVLVVDPPRKGLDSSLVHALQSIG-SAERKAKS 403 (457)
Q Consensus 362 ~~~-----~-----~~~~~-~-D~vi~DPPR~Gl~~~v~~~l~~~~-~~~~ivyv 403 (457)
.+- . .|... . =-||-|-|+.-.++-+++.|..+. ..+-..|.
T Consensus 109 R~~I~~~~~~~~~Rpw~d~~p~~H~IGNLPf~i~~pliik~l~~~s~r~G~~~yg 163 (326)
T KOG0821|consen 109 RFKIEKAFSESLKRPWEDDPPNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYG 163 (326)
T ss_pred eehHHhhcchhhcCCcccCCCceEEeccCCccccchHHHHHHhhcccccCCeeec
Confidence 431 1 11111 1 256778899888888999998875 23445554
No 303
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=73.43 E-value=7.1 Score=40.05 Aligned_cols=45 Identities=16% Similarity=0.079 Sum_probs=37.4
Q ss_pred CCCCeEEEEcccc-cHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHH
Q 044572 297 PYGASVTDLYAGA-GVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341 (457)
Q Consensus 297 ~~~~~vLDl~cG~-G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~N 341 (457)
.++++||..+||. |.+++.+|+..++.+|++++.+++.++.+++.
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 4688999998877 88888888877766799999999988887753
No 304
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=73.27 E-value=21 Score=33.88 Aligned_cols=77 Identities=13% Similarity=-0.003 Sum_probs=60.6
Q ss_pred CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc-CCccEEE
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL-VGSDVLV 375 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~-~~~D~vi 375 (457)
.+|.+||++|=|.|.+.-.+-. ....+=+-||-+++.++..+.+.=. ...||..+.|..++.+..+. +.||=|+
T Consensus 100 tkggrvLnVGFGMgIidT~iQe-~~p~~H~IiE~hp~V~krmr~~gw~----ek~nViil~g~WeDvl~~L~d~~FDGI~ 174 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQE-APPDEHWIIEAHPDVLKRMRDWGWR----EKENVIILEGRWEDVLNTLPDKHFDGIY 174 (271)
T ss_pred hCCceEEEeccchHHHHHHHhh-cCCcceEEEecCHHHHHHHHhcccc----cccceEEEecchHhhhccccccCcceeE
Confidence 3799999999999998877765 4445667899999999988887533 34688999998888766553 5699999
Q ss_pred ECC
Q 044572 376 VDP 378 (457)
Q Consensus 376 ~DP 378 (457)
-|-
T Consensus 175 yDT 177 (271)
T KOG1709|consen 175 YDT 177 (271)
T ss_pred eec
Confidence 885
No 305
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=72.22 E-value=7.8 Score=38.78 Aligned_cols=45 Identities=22% Similarity=0.177 Sum_probs=35.3
Q ss_pred CCCCCeEEEEccc-ccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH
Q 044572 296 VPYGASVTDLYAG-AGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340 (457)
Q Consensus 296 ~~~~~~vLDl~cG-~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~ 340 (457)
+++|.++.=.|.| +|...+.-|+.+|+++++|||+|++-.+.|++
T Consensus 190 v~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 190 VEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred cCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence 4578888877774 45555666677889999999999999888774
No 306
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.10 E-value=75 Score=29.31 Aligned_cols=120 Identities=11% Similarity=0.057 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhC---CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044572 281 NTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAAR---KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHN 357 (457)
Q Consensus 281 n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~---~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~ 357 (457)
..+.+..|.+.+.+...++.+|-=+-|-+=. +..-.+- +-.+|+-.|.+..-- .. + -+|+.
T Consensus 56 ~~eta~~La~e~v~~s~e~~rIacvS~Psly--~y~k~re~~~~~~~v~lfEfDkRFe--------~y---g---~eFvf 119 (217)
T KOG3350|consen 56 SDETARKLAAERVEASGEGSRIACVSCPSLY--VYQKKREIEIPHDQVYLFEFDKRFE--------LY---G---TEFVF 119 (217)
T ss_pred CHHHHHHHHHHHHhhcccCceEEEEeCchHH--hhhhhhhccCCceeEEEEEehhhHH--------hc---c---ceeEE
Confidence 3567788888888776677777666665533 2222211 234788888887642 21 1 24555
Q ss_pred ccCCc---CcccccCCccEEEECCCCCCcc--HHHHHHHHhcCCCC-cEEEEeccCCCCCchhchhhHHHHHH
Q 044572 358 ADNSI---EPLSWLVGSDVLVVDPPRKGLD--SSLVHALQSIGSAE-RKAKSLSESSSSMVKEEKRPWILRAK 424 (457)
Q Consensus 358 ~d~~~---~~~~~~~~~D~vi~DPPR~Gl~--~~v~~~l~~~~~~~-~ivyvs~~~~~c~~~~~~~~~~~~~~ 424 (457)
-|-.. ....+...||+||.|||.-+.. .+....+..+..+. +++. |.+.. +.+|+....
T Consensus 120 YDyN~p~dlp~~lk~~fdiivaDPPfL~~eCl~Kts~tik~L~r~~~kvil-------CtGei-mee~~s~~l 184 (217)
T KOG3350|consen 120 YDYNCPLDLPDELKAHFDIIVADPPFLSEECLAKTSETIKRLQRNQKKVIL-------CTGEI-MEEWASALL 184 (217)
T ss_pred eccCCCCCCHHHHHhcccEEEeCCccccchhhhhhHHHHHHHhcCCceEEE-------echhH-hHHHHHHHh
Confidence 55432 3333446799999999986544 34445555544333 4433 55443 455655443
No 307
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=71.14 E-value=4.2 Score=45.14 Aligned_cols=43 Identities=28% Similarity=0.353 Sum_probs=36.7
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHH
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTV 342 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na 342 (457)
.+..++|-|+|-|+|.+.+++.+ ..|++||.+|.|.-..++-+
T Consensus 90 ~~~~~lDPfAG~GSIPlEAlRLG--~~v~AvelnPvAylfLKavl 132 (875)
T COG1743 90 EGPKLLDPFAGGGSIPLEALRLG--LEVVAVELNPVAYLFLKAVL 132 (875)
T ss_pred cCCcccccccCCCccchHHHhcC--ceeEEEecccHHHHHHHHHH
Confidence 57889999999999999999864 48999999999987666543
No 308
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=70.26 E-value=15 Score=36.04 Aligned_cols=101 Identities=16% Similarity=0.034 Sum_probs=52.2
Q ss_pred CeEEEEcccccH--HHHHHHhh-CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc---c--cccCCc
Q 044572 300 ASVTDLYAGAGV--IGLSLAAA-RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP---L--SWLVGS 371 (457)
Q Consensus 300 ~~vLDl~cG~G~--~sl~lA~~-~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~---~--~~~~~~ 371 (457)
..+||+|||.=+ -.-..|+. ....+|+-||.++-.+..++.-+..+ ......++++|+.+-- . ....-+
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~---~~g~t~~v~aD~r~p~~iL~~p~~~~~l 146 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN---PRGRTAYVQADLRDPEAILAHPEVRGLL 146 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT----TTSEEEEEE--TT-HHHHHCSHHHHCC-
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC---CCccEEEEeCCCCCHHHHhcCHHHHhcC
Confidence 579999999753 22333332 23468999999999999988776542 1123899999997631 1 000111
Q ss_pred c------EEEEC-----CCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 372 D------VLVVD-----PPRKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 372 D------~vi~D-----PPR~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
| ++++. |.... ...++..+....+++..+.+|
T Consensus 147 D~~rPVavll~~vLh~v~D~~d-p~~iv~~l~d~lapGS~L~is 189 (267)
T PF04672_consen 147 DFDRPVAVLLVAVLHFVPDDDD-PAGIVARLRDALAPGSYLAIS 189 (267)
T ss_dssp -TTS--EEEECT-GGGS-CGCT-HHHHHHHHHCCS-TT-EEEEE
T ss_pred CCCCCeeeeeeeeeccCCCccC-HHHHHHHHHHhCCCCceEEEE
Confidence 2 22220 11111 235778887777788888887
No 309
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=70.15 E-value=24 Score=35.53 Aligned_cols=107 Identities=13% Similarity=0.015 Sum_probs=59.4
Q ss_pred CCCeEEEEcccccHHHHHHHhhC--CCCEEEEEeCCHHHHHHHHHHH-hhCCCCCCCcEEEEEccCCcCc--ccccCCcc
Q 044572 298 YGASVTDLYAGAGVIGLSLAAAR--KCRSVKCVEINKESQLSFEKTV-SRLPKSVDGNISWHNADNSIEP--LSWLVGSD 372 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~--~~~~V~gVE~~~~av~~A~~Na-~~~~~~~~~nv~~~~~d~~~~~--~~~~~~~D 372 (457)
.+++|| +-.|+|.+|-++++.. ..-+|+++|............. ...+.....+++++.+|+.+.. ......+|
T Consensus 14 ~~~~vl-VtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~d 92 (348)
T PRK15181 14 APKRWL-ITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNVD 92 (348)
T ss_pred cCCEEE-EECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCCC
Confidence 456777 6678999998887642 1248999998543221111111 1100011246889999997631 22234578
Q ss_pred EEEE-----CCCCCCcc------------HHHHHHHHhcCCCCcEEEEecc
Q 044572 373 VLVV-----DPPRKGLD------------SSLVHALQSIGSAERKAKSLSE 406 (457)
Q Consensus 373 ~vi~-----DPPR~Gl~------------~~v~~~l~~~~~~~~ivyvs~~ 406 (457)
+||. .+++...+ ..+++++.+.. .+++||+||.
T Consensus 93 ~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~-~~~~v~~SS~ 142 (348)
T PRK15181 93 YVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAH-VSSFTYAASS 142 (348)
T ss_pred EEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcC-CCeEEEeech
Confidence 7654 23322111 14566666654 6799999853
No 310
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=69.55 E-value=33 Score=36.36 Aligned_cols=75 Identities=8% Similarity=0.090 Sum_probs=54.4
Q ss_pred hCCCCC-eEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH-HHhhCCCCCCCcEEEEEccCCcCcccccCCcc
Q 044572 295 YVPYGA-SVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK-TVSRLPKSVDGNISWHNADNSIEPLSWLVGSD 372 (457)
Q Consensus 295 ~~~~~~-~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~-Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D 372 (457)
++.+.. +++-++||.--++..+-+ .|...|+.+|+|+.+++.+.. |++. ..-..+...|+...... .+.||
T Consensus 44 ~~~p~~~~~l~lGCGNS~l~e~ly~-~G~~dI~~iD~S~V~V~~m~~~~~~~-----~~~~~~~~~d~~~l~fe-dESFd 116 (482)
T KOG2352|consen 44 YLSPSDFKILQLGCGNSELSEHLYK-NGFEDITNIDSSSVVVAAMQVRNAKE-----RPEMQMVEMDMDQLVFE-DESFD 116 (482)
T ss_pred hhchhhceeEeecCCCCHHHHHHHh-cCCCCceeccccHHHHHHHHhccccC-----CcceEEEEecchhccCC-Cccee
Confidence 344455 899999999999999886 678999999999999988764 3322 23567888887654332 24566
Q ss_pred EEEE
Q 044572 373 VLVV 376 (457)
Q Consensus 373 ~vi~ 376 (457)
+||.
T Consensus 117 iVId 120 (482)
T KOG2352|consen 117 IVID 120 (482)
T ss_pred EEEe
Confidence 6654
No 311
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=69.36 E-value=7.3 Score=36.12 Aligned_cols=69 Identities=16% Similarity=0.011 Sum_probs=46.7
Q ss_pred CCCCCeEEEEcccccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEc-cCCcCcc-----ccc
Q 044572 296 VPYGASVTDLYAGAGVIGLSLAAAR-KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNA-DNSIEPL-----SWL 368 (457)
Q Consensus 296 ~~~~~~vLDl~cG~G~~sl~lA~~~-~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~-d~~~~~~-----~~~ 368 (457)
+.++.+|||+||--|..+..+-++. ..+.|.|||+-.-. - ..-+.++++ |+.+-.. +.+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~---------p-----~~Ga~~i~~~dvtdp~~~~ki~e~l 132 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE---------P-----PEGATIIQGNDVTDPETYRKIFEAL 132 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc---------C-----CCCcccccccccCCHHHHHHHHHhC
Confidence 4579999999999999998887765 34689999984321 1 123455666 6655211 111
Q ss_pred --CCccEEEECC
Q 044572 369 --VGSDVLVVDP 378 (457)
Q Consensus 369 --~~~D~vi~DP 378 (457)
...|+|+.|-
T Consensus 133 p~r~VdvVlSDM 144 (232)
T KOG4589|consen 133 PNRPVDVVLSDM 144 (232)
T ss_pred CCCcccEEEecc
Confidence 3579999986
No 312
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=68.32 E-value=84 Score=29.26 Aligned_cols=75 Identities=19% Similarity=0.166 Sum_probs=48.0
Q ss_pred CCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc--ccc------
Q 044572 299 GASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LSW------ 367 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~--~~~------ 367 (457)
++++| +-.|+|.+|..+++. .| .+|++++.+.+.+..+...+... ..++.++.+|+.+.. ...
T Consensus 6 ~~~il-ItGasg~iG~~l~~~l~~~g-~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (251)
T PRK12826 6 GRVAL-VTGAARGIGRAIAVRLAADG-AEVIVVDICGDDAAATAELVEAA----GGKARARQVDVRDRAALKAAVAAGVE 79 (251)
T ss_pred CCEEE-EcCCCCcHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhc----CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 56777 555678888877643 23 37999999987666555554431 245888999987631 111
Q ss_pred -cCCccEEEECCC
Q 044572 368 -LVGSDVLVVDPP 379 (457)
Q Consensus 368 -~~~~D~vi~DPP 379 (457)
...+|+||....
T Consensus 80 ~~~~~d~vi~~ag 92 (251)
T PRK12826 80 DFGRLDILVANAG 92 (251)
T ss_pred HhCCCCEEEECCC
Confidence 136788887764
No 313
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=67.34 E-value=94 Score=29.11 Aligned_cols=75 Identities=23% Similarity=0.244 Sum_probs=49.3
Q ss_pred CCeEEEEcccccHHHHHHHhhC--CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc------c---c
Q 044572 299 GASVTDLYAGAGVIGLSLAAAR--KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL------S---W 367 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~~--~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~------~---~ 367 (457)
++++| +..|+|.+|..+++.. ...+|++++.+++..+.+...++.. ..++.++.+|+.+.-. . .
T Consensus 4 ~~~vl-ItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (258)
T PRK12429 4 GKVAL-VTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKA----GGKAIGVAMDVTDEEAINAGIDYAVET 78 (258)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 45566 6778899999888641 1248999999988877666555431 2468888999875311 1 1
Q ss_pred cCCccEEEECC
Q 044572 368 LVGSDVLVVDP 378 (457)
Q Consensus 368 ~~~~D~vi~DP 378 (457)
....|+||..-
T Consensus 79 ~~~~d~vi~~a 89 (258)
T PRK12429 79 FGGVDILVNNA 89 (258)
T ss_pred cCCCCEEEECC
Confidence 13578887643
No 314
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=67.14 E-value=57 Score=29.48 Aligned_cols=129 Identities=17% Similarity=0.181 Sum_probs=64.9
Q ss_pred ccccH--HHHHHHhhCC-CCEEEE--EeCCHHHHH---HHHHHHhhCCCCCCCcEE-EEEccCCcCcccc---cCCccEE
Q 044572 307 AGAGV--IGLSLAAARK-CRSVKC--VEINKESQL---SFEKTVSRLPKSVDGNIS-WHNADNSIEPLSW---LVGSDVL 374 (457)
Q Consensus 307 cG~G~--~sl~lA~~~~-~~~V~g--VE~~~~av~---~A~~Na~~~~~~~~~nv~-~~~~d~~~~~~~~---~~~~D~v 374 (457)
.|-|. |++.||+..+ ...++| .|...+.++ .+..|++.+... ++. ....|+.+..... ...||.|
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~---g~~V~~~VDat~l~~~~~~~~~~FDrI 79 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELREL---GVTVLHGVDATKLHKHFRLKNQRFDRI 79 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhc---CCccccCCCCCcccccccccCCcCCEE
Confidence 45565 5555555444 445555 455544443 345777664221 222 3456776654332 2579999
Q ss_pred EECCCCCC-----------ccHHHH----HHHHhcCCCCcEEEEeccCCCCCchh-chhhHHHHHHHhccccccccCCCC
Q 044572 375 VVDPPRKG-----------LDSSLV----HALQSIGSAERKAKSLSESSSSMVKE-EKRPWILRAKEASVQIGSKTNSEN 438 (457)
Q Consensus 375 i~DPPR~G-----------l~~~v~----~~l~~~~~~~~ivyvs~~~~~c~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 438 (457)
|.|=|-.| +..+++ +....+-.+++-|+|+ .|.... ..=++..++...+-.+......+.
T Consensus 80 iFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVT----l~~~~py~~W~i~~lA~~~gl~l~~~~~F~~ 155 (166)
T PF10354_consen 80 IFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVT----LKDGQPYDSWNIEELAAEAGLVLVRKVPFDP 155 (166)
T ss_pred EEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE----eCCCCCCccccHHHHHHhcCCEEEEEecCCH
Confidence 99999877 222222 2222333466777776 244333 122445555555544433332233
Q ss_pred CCCC
Q 044572 439 QSLP 442 (457)
Q Consensus 439 ~~~p 442 (457)
..+|
T Consensus 156 ~~yp 159 (166)
T PF10354_consen 156 SDYP 159 (166)
T ss_pred HHCC
Confidence 3444
No 315
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=65.40 E-value=69 Score=30.42 Aligned_cols=97 Identities=18% Similarity=0.130 Sum_probs=56.7
Q ss_pred CCeEEEEcccccHHHHHHHhh--CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc---ccc-CCcc
Q 044572 299 GASVTDLYAGAGVIGLSLAAA--RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL---SWL-VGSD 372 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~--~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~---~~~-~~~D 372 (457)
+++|| +..++|.+|..+++. ...-+|+++-.+++..... .. . ..+++++.+|+.+... +.. ..+|
T Consensus 17 ~~~il-ItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~---~~----~-~~~~~~~~~Dl~d~~~~l~~~~~~~~d 87 (251)
T PLN00141 17 TKTVF-VAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTS---LP----Q-DPSLQIVRADVTEGSDKLVEAIGDDSD 87 (251)
T ss_pred CCeEE-EECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHh---cc----c-CCceEEEEeeCCCCHHHHHHHhhcCCC
Confidence 56666 455577777777642 1123788887776543211 11 1 1368899999876322 122 4689
Q ss_pred EEEECCCCCC-c------------cHHHHHHHHhcCCCCcEEEEec
Q 044572 373 VLVVDPPRKG-L------------DSSLVHALQSIGSAERKAKSLS 405 (457)
Q Consensus 373 ~vi~DPPR~G-l------------~~~v~~~l~~~~~~~~ivyvs~ 405 (457)
+||...+... . ...+++++.... .+++||+|+
T Consensus 88 ~vi~~~g~~~~~~~~~~~~~n~~~~~~ll~a~~~~~-~~~iV~iSS 132 (251)
T PLN00141 88 AVICATGFRRSFDPFAPWKVDNFGTVNLVEACRKAG-VTRFILVSS 132 (251)
T ss_pred EEEECCCCCcCCCCCCceeeehHHHHHHHHHHHHcC-CCEEEEEcc
Confidence 9998866321 0 124566665554 689999984
No 316
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=65.32 E-value=85 Score=34.09 Aligned_cols=119 Identities=10% Similarity=0.094 Sum_probs=80.7
Q ss_pred HHHhhCCCCCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc--c
Q 044572 291 KLQKYVPYGASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--L 365 (457)
Q Consensus 291 ~i~~~~~~~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~--~ 365 (457)
.+..++ .|++|| +-.|+|+||-.+.+. .+.++++-+|.++.++-..+.+.+.. ....++.++-||+.+.- .
T Consensus 243 ~i~~~~-~gK~vL-VTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~--~~~~~~~~~igdVrD~~~~~ 318 (588)
T COG1086 243 LIGAML-TGKTVL-VTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREK--FPELKLRFYIGDVRDRDRVE 318 (588)
T ss_pred HHHhHc-CCCEEE-EeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhh--CCCcceEEEecccccHHHHH
Confidence 334444 477777 667889999888753 45789999999999999998887652 22467889999998742 1
Q ss_pred cccC--CccEEEECC-----------CCCCcc------HHHHHHHHhcCCCCcEEEEeccCCCCCchhc
Q 044572 366 SWLV--GSDVLVVDP-----------PRKGLD------SSLVHALQSIGSAERKAKSLSESSSSMVKEE 415 (457)
Q Consensus 366 ~~~~--~~D~vi~DP-----------PR~Gl~------~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~ 415 (457)
.... +.|+|+.=- |..+.. ..++++..+.+ .+..|.+| +...++|...
T Consensus 319 ~~~~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~-V~~~V~iS-TDKAV~PtNv 385 (588)
T COG1086 319 RAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNG-VKKFVLIS-TDKAVNPTNV 385 (588)
T ss_pred HHHhcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhC-CCEEEEEe-cCcccCCchH
Confidence 2222 478887622 211221 13566666665 89999996 6777777653
No 317
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=65.13 E-value=12 Score=39.73 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=17.6
Q ss_pred CeEEEEcccccHHHHHHHhh
Q 044572 300 ASVTDLYAGAGVIGLSLAAA 319 (457)
Q Consensus 300 ~~vLDl~cG~G~~sl~lA~~ 319 (457)
..+||+|||+|+||-.|..+
T Consensus 119 R~~LDvGcG~aSF~a~l~~r 138 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER 138 (506)
T ss_pred EEEEeccceeehhHHHHhhC
Confidence 36999999999999999864
No 318
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=64.57 E-value=24 Score=35.58 Aligned_cols=96 Identities=19% Similarity=0.131 Sum_probs=54.2
Q ss_pred CCCCeEEEEcc-cccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEc---cCCcCccccc--CC
Q 044572 297 PYGASVTDLYA-GAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNA---DNSIEPLSWL--VG 370 (457)
Q Consensus 297 ~~~~~vLDl~c-G~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~---d~~~~~~~~~--~~ 370 (457)
.++++||=.++ +.|.+++.+|+..|+.+|+++|.+++-.+.+++ ++ .+ .++.. +..+.+.... ..
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~G---a~--~~i~~~~~~~~~~i~~~~~~~g 245 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FG---AT--HTVNSSGTDPVEAIRALTGGFG 245 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cC---Cc--eEEcCCCcCHHHHHHHHhCCCC
Confidence 46888886654 234455556666676679999999998887753 21 11 22221 1111111111 25
Q ss_pred ccEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 371 SDVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 371 ~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
+|+|| | ..|-...+...+..+++.++++.+.
T Consensus 246 ~d~vi-d--~~g~~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 246 ADVVI-D--AVGRPETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred CCEEE-E--CCCCHHHHHHHHHHhccCCEEEEEC
Confidence 78776 4 3343334555565666677787775
No 319
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=63.74 E-value=10 Score=31.88 Aligned_cols=84 Identities=17% Similarity=0.117 Sum_probs=52.1
Q ss_pred cccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC---ccccc--CCccEEEECCCCCC
Q 044572 308 GAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE---PLSWL--VGSDVLVVDPPRKG 382 (457)
Q Consensus 308 G~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~---~~~~~--~~~D~vi~DPPR~G 382 (457)
|.|.+++.+|+..| .+|+++|.+++-.+.+++. + .+ .++..+-.++ +.... ..+|+||--- |
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~----G---a~--~~~~~~~~~~~~~i~~~~~~~~~d~vid~~---g 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKEL----G---AD--HVIDYSDDDFVEQIRELTGGRGVDVVIDCV---G 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHT----T---ES--EEEETTTSSHHHHHHHHTTTSSEEEEEESS---S
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhh----c---cc--ccccccccccccccccccccccceEEEEec---C
Confidence 67999999999887 8999999999998888752 1 11 2333332222 22222 2588877532 3
Q ss_pred ccHHHHHHHHhcCCCCcEEEEe
Q 044572 383 LDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 383 l~~~v~~~l~~~~~~~~ivyvs 404 (457)
-...+-..+..+++.++++.+.
T Consensus 68 ~~~~~~~~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 68 SGDTLQEAIKLLRPGGRIVVVG 89 (130)
T ss_dssp SHHHHHHHHHHEEEEEEEEEES
T ss_pred cHHHHHHHHHHhccCCEEEEEE
Confidence 2334455555566566777775
No 320
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=63.50 E-value=28 Score=34.62 Aligned_cols=105 Identities=11% Similarity=0.094 Sum_probs=61.5
Q ss_pred cccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEE----EEccCCcCc--ccccC--CccEE
Q 044572 306 YAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISW----HNADNSIEP--LSWLV--GSDVL 374 (457)
Q Consensus 306 ~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~----~~~d~~~~~--~~~~~--~~D~v 374 (457)
-.|+|++|-.|.+. .+.++++.+|.++..+-..++.++... ...++++ +-+|+.+.. ..... ++|+|
T Consensus 4 TGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~--~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiV 81 (293)
T PF02719_consen 4 TGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRF--PDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIV 81 (293)
T ss_dssp ETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC----TTCEEEEE--CTSCCHHHHHHHHTT--T-SEE
T ss_pred EccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcc--cccCcccccCceeecccCHHHHHHHHhhcCCCEE
Confidence 46899999998864 345799999999999998888764311 1134444 478887632 12223 78999
Q ss_pred EECCC-----------CCCcc------HHHHHHHHhcCCCCcEEEEeccCCCCCchh
Q 044572 375 VVDPP-----------RKGLD------SSLVHALQSIGSAERKAKSLSESSSSMVKE 414 (457)
Q Consensus 375 i~DPP-----------R~Gl~------~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~ 414 (457)
+-=-- ...+. ..++++..... .+++|++| +...++|..
T Consensus 82 fHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~-v~~~v~IS-TDKAv~Ptn 136 (293)
T PF02719_consen 82 FHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHG-VERFVFIS-TDKAVNPTN 136 (293)
T ss_dssp EE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT--SEEEEEE-ECGCSS--S
T ss_pred EEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEcc-ccccCCCCc
Confidence 87222 11111 13566666665 89999997 455566654
No 321
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=63.30 E-value=81 Score=31.64 Aligned_cols=75 Identities=15% Similarity=0.066 Sum_probs=44.7
Q ss_pred CCCeEEEEcccccHHHHHHHhhC--CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc--ccccCCccE
Q 044572 298 YGASVTDLYAGAGVIGLSLAAAR--KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LSWLVGSDV 373 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~--~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~--~~~~~~~D~ 373 (457)
.+.+|| +-.|+|.+|..+++.. ...+|++++.+............ ...+++++.+|+.+.. ......+|.
T Consensus 9 ~~~~vL-VtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 82 (353)
T PLN02896 9 ATGTYC-VTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWK-----EGDRLRLFRADLQEEGSFDEAVKGCDG 82 (353)
T ss_pred CCCEEE-EECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhc-----cCCeEEEEECCCCCHHHHHHHHcCCCE
Confidence 467777 4557899998888642 12479998887654332222211 1246889999987632 122245787
Q ss_pred EEECC
Q 044572 374 LVVDP 378 (457)
Q Consensus 374 vi~DP 378 (457)
||.-.
T Consensus 83 Vih~A 87 (353)
T PLN02896 83 VFHVA 87 (353)
T ss_pred EEECC
Confidence 76533
No 322
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=62.65 E-value=26 Score=34.21 Aligned_cols=115 Identities=16% Similarity=0.170 Sum_probs=64.9
Q ss_pred HHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc
Q 044572 288 LLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW 367 (457)
Q Consensus 288 l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~ 367 (457)
++++|... +....|-|+|||-+-++. .. ...|+..|..+. |-+++..|.......
T Consensus 171 ii~~ik~r-~~~~vIaD~GCGEakiA~---~~--~~kV~SfDL~a~------------------~~~V~~cDm~~vPl~- 225 (325)
T KOG3045|consen 171 IIRKIKRR-PKNIVIADFGCGEAKIAS---SE--RHKVHSFDLVAV------------------NERVIACDMRNVPLE- 225 (325)
T ss_pred HHHHHHhC-cCceEEEecccchhhhhh---cc--ccceeeeeeecC------------------CCceeeccccCCcCc-
Confidence 34444332 356678999999998875 22 237999987432 114567777765433
Q ss_pred cCCccEEEECCCCCCcc-HHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhcccc
Q 044572 368 LVGSDVLVVDPPRKGLD-SSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQI 430 (457)
Q Consensus 368 ~~~~D~vi~DPPR~Gl~-~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~~~~ 430 (457)
.+..|++|.=-.-.|-+ .+.++...+...+++++||. +-++- -...+.|...+...+-+.
T Consensus 226 d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IA-Ev~SR--f~dv~~f~r~l~~lGF~~ 286 (325)
T KOG3045|consen 226 DESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIA-EVKSR--FSDVKGFVRALTKLGFDV 286 (325)
T ss_pred cCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEE-ehhhh--cccHHHHHHHHHHcCCee
Confidence 35789887643333321 12344444444599999995 32221 123445666555555444
No 323
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=62.61 E-value=61 Score=32.25 Aligned_cols=59 Identities=22% Similarity=0.195 Sum_probs=47.5
Q ss_pred CCCeEEEEcccccH---HHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC
Q 044572 298 YGASVTDLYAGAGV---IGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE 363 (457)
Q Consensus 298 ~~~~vLDl~cG~G~---~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~ 363 (457)
.|+.||==|+|+|. +++.+|++ |+ +++.+|++++..+...+.++.+ + ++..+..|+.+.
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~r-g~-~~vl~Din~~~~~etv~~~~~~---g--~~~~y~cdis~~ 98 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKR-GA-KLVLWDINKQGNEETVKEIRKI---G--EAKAYTCDISDR 98 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHh-CC-eEEEEeccccchHHHHHHHHhc---C--ceeEEEecCCCH
Confidence 58889988888884 88889975 43 8999999999998888887763 2 678888898763
No 324
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=62.17 E-value=14 Score=36.20 Aligned_cols=46 Identities=20% Similarity=0.311 Sum_probs=36.2
Q ss_pred HHHHHHHhhCCC-CCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHH
Q 044572 287 ILLRKLQKYVPY-GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336 (457)
Q Consensus 287 ~l~~~i~~~~~~-~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~ 336 (457)
.|+..|.++++. ..+.+|.|||.|+..+.+.. ..++.-|++++.+.
T Consensus 13 ~l~~~i~~~~p~~~~~yvEPF~Gggsv~l~~~~----~~~~lND~n~~Li~ 59 (266)
T TIGR00571 13 SLLPEIKKHLPKNFNCLVEPFVGGGAVFFNLNP----KRYLLNDINEDLIN 59 (266)
T ss_pred HHHHHHHHhcCcccCEEEEecCCcchhheeecC----cEEEEecCCHHHHH
Confidence 466777777764 46899999999999986642 36888999998765
No 325
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=61.82 E-value=15 Score=35.50 Aligned_cols=44 Identities=16% Similarity=0.165 Sum_probs=33.1
Q ss_pred CeEEEEcccccHHHHHHHhhCC--------CCEEEEEeCCHHHHHHHHHHHh
Q 044572 300 ASVTDLYAGAGVIGLSLAAARK--------CRSVKCVEINKESQLSFEKTVS 343 (457)
Q Consensus 300 ~~vLDl~cG~G~~sl~lA~~~~--------~~~V~gVE~~~~av~~A~~Na~ 343 (457)
-+|+|+|+|+|.++.-+..... .-+++-||+|+.+.+.-++.+.
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~ 71 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLS 71 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhh
Confidence 5899999999999988776422 2389999999998877776654
No 326
>PF05575 V_cholerae_RfbT: Vibrio cholerae RfbT protein; InterPro: IPR008890 This family consists of several RfbT proteins from Vibrio cholerae. It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of V. cholerae O1 [] and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion [].
Probab=60.36 E-value=11 Score=34.11 Aligned_cols=58 Identities=14% Similarity=0.003 Sum_probs=46.5
Q ss_pred HHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhC
Q 044572 288 LLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRL 345 (457)
Q Consensus 288 l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~ 345 (457)
|-.|+....+.+.+-+|+|+.+|+|.-.+|+.--..+++++|--.+|-...+.|.+.+
T Consensus 69 mrhwivnhckhdttyidiganvgtfcgiaarhitqgkiiaiepltemensirmnvqln 126 (286)
T PF05575_consen 69 MRHWIVNHCKHDTTYIDIGANVGTFCGIAARHITQGKIIAIEPLTEMENSIRMNVQLN 126 (286)
T ss_pred hhHhhhhhccCCceEEEeccccccchhhhhhhcccCceEEEechhhhhhheeeeeeeC
Confidence 3456666666678899999999999888887644568999999999988888888763
No 327
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=59.76 E-value=61 Score=32.55 Aligned_cols=94 Identities=14% Similarity=0.053 Sum_probs=49.4
Q ss_pred CCCeEEEEccc-ccHHHHHHHhhCCCCEEEEEeC---CHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccE
Q 044572 298 YGASVTDLYAG-AGVIGLSLAAARKCRSVKCVEI---NKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDV 373 (457)
Q Consensus 298 ~~~~vLDl~cG-~G~~sl~lA~~~~~~~V~gVE~---~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~ 373 (457)
++++||=.|+| +|.+++.+|+..|+ +|++++. +++-.+.+++ ++ .+.+.....+..+ . .....+|+
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~----~G---a~~v~~~~~~~~~-~-~~~~~~d~ 241 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEE----LG---ATYVNSSKTPVAE-V-KLVGEFDL 241 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH----cC---CEEecCCccchhh-h-hhcCCCCE
Confidence 57788766653 35556666776666 7999987 6666666653 21 1111111111111 1 11245786
Q ss_pred EEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 374 LVVDPPRKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 374 vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
||- . .|-...+.+.+..+++.++++.+.
T Consensus 242 vid-~--~g~~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 242 IIE-A--TGVPPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred EEE-C--cCCHHHHHHHHHHccCCcEEEEEe
Confidence 664 3 232233455566666666776664
No 328
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=59.57 E-value=68 Score=31.95 Aligned_cols=100 Identities=14% Similarity=0.202 Sum_probs=57.7
Q ss_pred CCeEEEEcccccHHHHHHHhh---CC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc--ccccCCcc
Q 044572 299 GASVTDLYAGAGVIGLSLAAA---RK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LSWLVGSD 372 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~---~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~--~~~~~~~D 372 (457)
+.+|| +-.|+|.+|..+++. .+ ..+|++++.+........... . ..++.++.+|+.+.. ......+|
T Consensus 4 ~k~vL-VTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~-----~-~~~~~~v~~Dl~d~~~l~~~~~~iD 76 (324)
T TIGR03589 4 NKSIL-ITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKF-----P-APCLRFFIGDVRDKERLTRALRGVD 76 (324)
T ss_pred CCEEE-EeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHh-----C-CCcEEEEEccCCCHHHHHHHHhcCC
Confidence 56677 556789999888864 11 247999987765432222111 1 146889999988642 12234688
Q ss_pred EEEECC-----CCCCccH------------HHHHHHHhcCCCCcEEEEecc
Q 044572 373 VLVVDP-----PRKGLDS------------SLVHALQSIGSAERKAKSLSE 406 (457)
Q Consensus 373 ~vi~DP-----PR~Gl~~------------~v~~~l~~~~~~~~ivyvs~~ 406 (457)
+||..- |....++ .+++++.... .+++|++|+.
T Consensus 77 ~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~-~~~iV~~SS~ 126 (324)
T TIGR03589 77 YVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNG-VKRVVALSTD 126 (324)
T ss_pred EEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEEeCC
Confidence 887632 2111111 2444555443 5789999854
No 329
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=59.37 E-value=8.4 Score=37.48 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=28.3
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHH
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKES 334 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~a 334 (457)
.+..+.|+|+|||..|-.+-+.+ ..|++-|+--.+
T Consensus 27 s~k~f~DiFaGtGVV~~~fkk~~--n~iiaNDle~ys 61 (330)
T COG3392 27 SGKIFCDIFAGTGVVGRFFKKAG--NKIIANDLEYYS 61 (330)
T ss_pred CCCeeeeeccCccHHHHHHHHhc--chhhhchHHHHH
Confidence 57789999999999999988754 489998875443
No 330
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=58.91 E-value=37 Score=34.03 Aligned_cols=94 Identities=12% Similarity=0.097 Sum_probs=54.9
Q ss_pred eEEEEcccccHHHHHHHhhC---CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCC-cC--cccccCCccEE
Q 044572 301 SVTDLYAGAGVIGLSLAAAR---KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNS-IE--PLSWLVGSDVL 374 (457)
Q Consensus 301 ~vLDl~cG~G~~sl~lA~~~---~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~-~~--~~~~~~~~D~v 374 (457)
+|| +-.|+|.+|..+++.. +.-+|++++.+..... ... ....++++.+|+. +. +......+|+|
T Consensus 3 ~il-VtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~------~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~d~V 72 (347)
T PRK11908 3 KVL-ILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLG------DLV---NHPRMHFFEGDITINKEWIEYHVKKCDVI 72 (347)
T ss_pred EEE-EECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHH------Hhc---cCCCeEEEeCCCCCCHHHHHHHHcCCCEE
Confidence 455 6678899999987642 1248999998654221 111 1135889999986 21 11223468888
Q ss_pred EE-----CCCCCCcc------------HHHHHHHHhcCCCCcEEEEecc
Q 044572 375 VV-----DPPRKGLD------------SSLVHALQSIGSAERKAKSLSE 406 (457)
Q Consensus 375 i~-----DPPR~Gl~------------~~v~~~l~~~~~~~~ivyvs~~ 406 (457)
|- .|+...-+ ..+++++.+. ..++||+||.
T Consensus 73 iH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~--~~~~v~~SS~ 119 (347)
T PRK11908 73 LPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKY--GKHLVFPSTS 119 (347)
T ss_pred EECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhc--CCeEEEEecc
Confidence 72 45432111 1234554444 3799999864
No 331
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=58.34 E-value=11 Score=38.57 Aligned_cols=75 Identities=17% Similarity=0.112 Sum_probs=48.3
Q ss_pred CCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEE
Q 044572 296 VPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVL 374 (457)
Q Consensus 296 ~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~v 374 (457)
+.++..++|++||.|..+...+... ...++|++.++.-+..+..-.... ...++..++.+|....... .+.||.+
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~-~~~~~Gl~~n~~e~~~~~~~~~~~--~l~~k~~~~~~~~~~~~fe-dn~fd~v 182 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFK-KAGVVGLDNNAYEAFRANELAKKA--YLDNKCNFVVADFGKMPFE-DNTFDGV 182 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhc-cCCccCCCcCHHHHHHHHHHHHHH--HhhhhcceehhhhhcCCCC-ccccCcE
Confidence 3467789999999999999999754 457999999988776655433221 2223344566665543322 2345543
No 332
>PLN02650 dihydroflavonol-4-reductase
Probab=57.95 E-value=76 Score=31.80 Aligned_cols=75 Identities=13% Similarity=0.119 Sum_probs=43.8
Q ss_pred CCeEEEEcccccHHHHHHHhhC--CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC--cccccCCccEE
Q 044572 299 GASVTDLYAGAGVIGLSLAAAR--KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE--PLSWLVGSDVL 374 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~~--~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~--~~~~~~~~D~v 374 (457)
.++|| +-.|+|.+|.++++.. ...+|+++..+.........-.... ....+++++.+|+.+. +......+|.|
T Consensus 5 ~k~iL-VTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~v~~Dl~d~~~~~~~~~~~d~V 81 (351)
T PLN02650 5 KETVC-VTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLP--GATTRLTLWKADLAVEGSFDDAIRGCTGV 81 (351)
T ss_pred CCEEE-EeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhcc--CCCCceEEEEecCCChhhHHHHHhCCCEE
Confidence 45566 6778999999888642 1248998888765543322211110 1123588999998763 22223457776
Q ss_pred EE
Q 044572 375 VV 376 (457)
Q Consensus 375 i~ 376 (457)
|.
T Consensus 82 iH 83 (351)
T PLN02650 82 FH 83 (351)
T ss_pred EE
Confidence 64
No 333
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=57.41 E-value=82 Score=30.86 Aligned_cols=105 Identities=15% Similarity=0.097 Sum_probs=56.8
Q ss_pred CCeEEEEcccccHHHHHHHhhC--CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc--ccccCCccEE
Q 044572 299 GASVTDLYAGAGVIGLSLAAAR--KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LSWLVGSDVL 374 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~~--~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~--~~~~~~~D~v 374 (457)
+++|| +-.|+|.+|..+++.. ..-+|+++..+.............. ....+++++.+|+.+.. ......+|.|
T Consensus 4 ~~~il-VtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 80 (322)
T PLN02662 4 GKVVC-VTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALD--GAKERLHLFKANLLEEGSFDSVVDGCEGV 80 (322)
T ss_pred CCEEE-EECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhcc--CCCCceEEEeccccCcchHHHHHcCCCEE
Confidence 45666 4556899998887642 1237888887754322222211110 11247899999987632 2223467877
Q ss_pred EECCCCC--C-ccH-------------HHHHHHHhcCCCCcEEEEecc
Q 044572 375 VVDPPRK--G-LDS-------------SLVHALQSIGSAERKAKSLSE 406 (457)
Q Consensus 375 i~DPPR~--G-l~~-------------~v~~~l~~~~~~~~ivyvs~~ 406 (457)
|.--... . ..+ .+++++.+....+++||+||.
T Consensus 81 ih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS~ 128 (322)
T PLN02662 81 FHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSSM 128 (322)
T ss_pred EEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccCH
Confidence 6643211 0 010 234444444236799999864
No 334
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=57.21 E-value=15 Score=36.21 Aligned_cols=53 Identities=21% Similarity=0.180 Sum_probs=34.3
Q ss_pred cEEEEEccCCcCcccccCCccEEEECCCCCCccH------------------HHHHHHHhcCCCCcEEEEe
Q 044572 352 NISWHNADNSIEPLSWLVGSDVLVVDPPRKGLDS------------------SLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 352 nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~Gl~~------------------~v~~~l~~~~~~~~ivyvs 404 (457)
++++.++|..+.+......-|+|.+|||+.++.. .+.+.+.++.....+.++.
T Consensus 156 ~~~i~~~df~~v~~~a~~~~dfvY~DPPY~~~s~t~~f~~Y~~~~f~~~~~~~La~~~~~l~~~~~i~~~~ 226 (274)
T COG0338 156 NATIENGDFEEVLADADSGDDFVYCDPPYLPLSATSNFTAYGGNGFTEDQHLRLAEVLKELEGKRGISVLD 226 (274)
T ss_pred cCeEEcCCHHHHHhhccCCCcEEEeCCCCCccccccccccccCCCCChHHHHHHHHHHHhccccceEEEec
Confidence 4789999988765433333489999999753221 3566666675455555555
No 335
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=56.98 E-value=12 Score=37.02 Aligned_cols=106 Identities=11% Similarity=0.048 Sum_probs=72.7
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCC-CCCcEEEEEccCCcCcccc-cCCccEEE
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKS-VDGNISWHNADNSIEPLSW-LVGSDVLV 375 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~-~~~nv~~~~~d~~~~~~~~-~~~~D~vi 375 (457)
.-++||=+|.|-|.+--..+++.-...+.-+|++..-++..++=......+ ...++..+-||.+.++... .+.||+||
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii 200 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVII 200 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEE
Confidence 457899999999998887777655678999999999999888754432111 2457899999988876655 47899999
Q ss_pred ECCCCC-C--c---cHHHHHHHHhcCCCCcEEEE
Q 044572 376 VDPPRK-G--L---DSSLVHALQSIGSAERKAKS 403 (457)
Q Consensus 376 ~DPPR~-G--l---~~~v~~~l~~~~~~~~ivyv 403 (457)
+|---. | . .+...+.+.....+++++.+
T Consensus 201 ~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~ 234 (337)
T KOG1562|consen 201 TDSSDPVGPACALFQKPYFGLVLDALKGDGVVCT 234 (337)
T ss_pred EecCCccchHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 975421 1 1 11234444444346666554
No 336
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=56.49 E-value=10 Score=36.92 Aligned_cols=45 Identities=24% Similarity=0.448 Sum_probs=35.2
Q ss_pred eeeEEEEECCCCCCCCCHH-HHHHHHHHHHhhCCCCCeEEEEccccc
Q 044572 265 VGGIDISLAPSSFGQANTR-AFDILLRKLQKYVPYGASVTDLYAGAG 310 (457)
Q Consensus 265 ~~g~~~~i~~~~FfQ~n~~-~~~~l~~~i~~~~~~~~~vLDl~cG~G 310 (457)
+.|. +.+.|++|++.-.. ..+.+++.+.+++..|..++|+|+++.
T Consensus 3 imGi-lN~t~dsf~~~~~~~~~~~~~~~a~~~~~~GAdiIDvG~~st 48 (258)
T cd00423 3 IMGI-LNVTPDSFSDGGKFLSLDKALEHARRMVEEGADIIDIGGEST 48 (258)
T ss_pred EEEE-ecCCCCchhhccccCCHHHHHHHHHHHHHCCCCEEEECCCcC
Confidence 3466 88889999985443 346677777777778999999999997
No 337
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=55.82 E-value=53 Score=34.47 Aligned_cols=74 Identities=15% Similarity=0.306 Sum_probs=50.5
Q ss_pred EEEEeCC-HHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc--------cc-cCCccEEEECCC-CCCccHHHHHHHHh
Q 044572 325 VKCVEIN-KESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL--------SW-LVGSDVLVVDPP-RKGLDSSLVHALQS 393 (457)
Q Consensus 325 V~gVE~~-~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~--------~~-~~~~D~vi~DPP-R~Gl~~~v~~~l~~ 393 (457)
+++.|.. |.|+++.+..++.. +|.|+..+...-.. .. ...+|+||+|=- |-.++.++++.+..
T Consensus 133 lVaaD~~RpAA~eQL~~La~q~------~v~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~ 206 (451)
T COG0541 133 LVAADTYRPAAIEQLKQLAEQV------GVPFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKE 206 (451)
T ss_pred EEecccCChHHHHHHHHHHHHc------CCceecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHH
Confidence 6777776 88899999998873 34555443222111 11 246899999987 88888888777765
Q ss_pred cC---CCCcEEEEe
Q 044572 394 IG---SAERKAKSL 404 (457)
Q Consensus 394 ~~---~~~~ivyvs 404 (457)
.. .|..+++|-
T Consensus 207 Ik~~~~P~E~llVv 220 (451)
T COG0541 207 IKEVINPDETLLVV 220 (451)
T ss_pred HHhhcCCCeEEEEE
Confidence 43 578888885
No 338
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=55.19 E-value=46 Score=36.11 Aligned_cols=87 Identities=14% Similarity=0.070 Sum_probs=53.5
Q ss_pred cccccHHHHHHHhhC--CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc--ccc-cCCccEEEECCCC
Q 044572 306 YAGAGVIGLSLAAAR--KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LSW-LVGSDVLVVDPPR 380 (457)
Q Consensus 306 ~cG~G~~sl~lA~~~--~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~--~~~-~~~~D~vi~DPPR 380 (457)
=||.|.+|..+++.- ....|+.||.|++.++.+++ . ....+.||+.+.- .+. .++.|.+++.=+.
T Consensus 422 I~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~---~-------g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~ 491 (558)
T PRK10669 422 LVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE---R-------GIRAVLGNAANEEIMQLAHLDCARWLLLTIPN 491 (558)
T ss_pred EECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH---C-------CCeEEEcCCCCHHHHHhcCccccCEEEEEcCC
Confidence 488888988888741 22479999999999887763 1 2478999998631 111 2568877664333
Q ss_pred CCccHHHHHHHHhcCCCCcEEE
Q 044572 381 KGLDSSLVHALQSIGSAERKAK 402 (457)
Q Consensus 381 ~Gl~~~v~~~l~~~~~~~~ivy 402 (457)
..-...+...+++..+..+++.
T Consensus 492 ~~~~~~iv~~~~~~~~~~~iia 513 (558)
T PRK10669 492 GYEAGEIVASAREKRPDIEIIA 513 (558)
T ss_pred hHHHHHHHHHHHHHCCCCeEEE
Confidence 2222234555566553334443
No 339
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=53.73 E-value=48 Score=33.38 Aligned_cols=97 Identities=21% Similarity=0.207 Sum_probs=57.9
Q ss_pred CCCCeEEEEc--ccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccccc--CCcc
Q 044572 297 PYGASVTDLY--AGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWL--VGSD 372 (457)
Q Consensus 297 ~~~~~vLDl~--cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~--~~~D 372 (457)
+.|++||=.+ .|+|.+++.+|+..|+ .++++-.+++-.+.+++ ++ ...-+.+...|..+...++. ..+|
T Consensus 141 ~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~----lG--Ad~vi~y~~~~~~~~v~~~t~g~gvD 213 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKE----LG--ADHVINYREEDFVEQVRELTGGKGVD 213 (326)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHh----cC--CCEEEcCCcccHHHHHHHHcCCCCce
Confidence 4688888666 4888999999998766 67777777766654443 21 11123344444333333332 2588
Q ss_pred EEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 373 VLVVDPPRKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 373 ~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
+|+ |+-- ...+.+.+..+.+.++++.+.
T Consensus 214 vv~-D~vG---~~~~~~~l~~l~~~G~lv~ig 241 (326)
T COG0604 214 VVL-DTVG---GDTFAASLAALAPGGRLVSIG 241 (326)
T ss_pred EEE-ECCC---HHHHHHHHHHhccCCEEEEEe
Confidence 765 5542 123445666777677887775
No 340
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=52.97 E-value=78 Score=31.93 Aligned_cols=96 Identities=14% Similarity=0.161 Sum_probs=52.8
Q ss_pred CeEEEEcccccHHHH----HHHhhCCCCEEEEEeCCHHHHHHHHHHHhh-------CCC---CCCCcEEEEEccCCcCcc
Q 044572 300 ASVTDLYAGAGVIGL----SLAAARKCRSVKCVEINKESQLSFEKTVSR-------LPK---SVDGNISWHNADNSIEPL 365 (457)
Q Consensus 300 ~~vLDl~cG~G~~sl----~lA~~~~~~~V~gVE~~~~av~~A~~Na~~-------~~~---~~~~nv~~~~~d~~~~~~ 365 (457)
.+|-=+|+ |++|. .+|.. | -+|+.+|.++++++.++..++. .+. ....++++.. | +.
T Consensus 8 ~~VaVIGa--G~MG~giA~~~a~a-G-~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~----l~ 78 (321)
T PRK07066 8 KTFAAIGS--GVIGSGWVARALAH-G-LDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-T----IE 78 (321)
T ss_pred CEEEEECc--CHHHHHHHHHHHhC-C-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-C----HH
Confidence 34544555 44443 34432 3 4899999999988876654321 100 0001222221 1 11
Q ss_pred cccCCccEEEECCC-CCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 366 SWLVGSDVLVVDPP-RKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 366 ~~~~~~D~vi~DPP-R~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
......|+|+-.=| +..+...+.+.+.+..+++.++..|
T Consensus 79 ~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSn 118 (321)
T PRK07066 79 ACVADADFIQESAPEREALKLELHERISRAAKPDAIIASS 118 (321)
T ss_pred HHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEEC
Confidence 22356798888766 5566677888888776566655543
No 341
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=52.10 E-value=23 Score=38.54 Aligned_cols=39 Identities=15% Similarity=0.088 Sum_probs=31.8
Q ss_pred hCCCCCeEEEEcccccHHHHHHHhhCCC-CEEEEEeCCHH
Q 044572 295 YVPYGASVTDLYAGAGVIGLSLAAARKC-RSVKCVEINKE 333 (457)
Q Consensus 295 ~~~~~~~vLDl~cG~G~~sl~lA~~~~~-~~V~gVE~~~~ 333 (457)
++.++..||||||-.|+....+++..+. +-|+|||+.|-
T Consensus 41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi 80 (780)
T KOG1098|consen 41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI 80 (780)
T ss_pred cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec
Confidence 3567889999999999999888876554 46999999763
No 342
>PRK07904 short chain dehydrogenase; Provisional
Probab=52.01 E-value=58 Score=31.02 Aligned_cols=79 Identities=13% Similarity=0.009 Sum_probs=48.9
Q ss_pred CCCCCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHH-HHHHHHHHhhCCCCCCCcEEEEEccCCcCcc------
Q 044572 296 VPYGASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKES-QLSFEKTVSRLPKSVDGNISWHNADNSIEPL------ 365 (457)
Q Consensus 296 ~~~~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~a-v~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~------ 365 (457)
+..+++||=.|+ +|.+|..+|+. .+..+|+.++.+++. ++.+.+.++.. ...+++++..|+.+...
T Consensus 5 ~~~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~---~~~~v~~~~~D~~~~~~~~~~~~ 80 (253)
T PRK07904 5 VGNPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAA---GASSVEVIDFDALDTDSHPKVID 80 (253)
T ss_pred cCCCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhc---CCCceEEEEecCCChHHHHHHHH
Confidence 334567775555 67788777753 223589999988764 55555555442 22478999999875321
Q ss_pred cc--cCCccEEEECC
Q 044572 366 SW--LVGSDVLVVDP 378 (457)
Q Consensus 366 ~~--~~~~D~vi~DP 378 (457)
.. .+..|++|.+-
T Consensus 81 ~~~~~g~id~li~~a 95 (253)
T PRK07904 81 AAFAGGDVDVAIVAF 95 (253)
T ss_pred HHHhcCCCCEEEEee
Confidence 11 13688887654
No 343
>PLN02214 cinnamoyl-CoA reductase
Probab=51.96 E-value=1.8e+02 Score=29.11 Aligned_cols=103 Identities=15% Similarity=0.057 Sum_probs=57.2
Q ss_pred CCCeEEEEcccccHHHHHHHhhC--CCCEEEEEeCCHHHHHHH-HHHHhhCCCCCCCcEEEEEccCCcCc--ccccCCcc
Q 044572 298 YGASVTDLYAGAGVIGLSLAAAR--KCRSVKCVEINKESQLSF-EKTVSRLPKSVDGNISWHNADNSIEP--LSWLVGSD 372 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~--~~~~V~gVE~~~~av~~A-~~Na~~~~~~~~~nv~~~~~d~~~~~--~~~~~~~D 372 (457)
.+++|| +-.|+|.+|.++++.. ..-+|+++..+.+..... ..+... ...+++++.+|+.+.. .......|
T Consensus 9 ~~~~vl-VTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~d~~~~~~~~~~~d 83 (342)
T PLN02214 9 AGKTVC-VTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEG----GKERLILCKADLQDYEALKAAIDGCD 83 (342)
T ss_pred CCCEEE-EECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhC----CCCcEEEEecCcCChHHHHHHHhcCC
Confidence 456777 4556899998887531 124799988876543211 112211 1235889999987632 12234678
Q ss_pred EEEECCCCCCcc------------HHHHHHHHhcCCCCcEEEEecc
Q 044572 373 VLVVDPPRKGLD------------SSLVHALQSIGSAERKAKSLSE 406 (457)
Q Consensus 373 ~vi~DPPR~Gl~------------~~v~~~l~~~~~~~~ivyvs~~ 406 (457)
+||.--...... ..+++++.+.. .+++||+||.
T Consensus 84 ~Vih~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~-v~r~V~~SS~ 128 (342)
T PLN02214 84 GVFHTASPVTDDPEQMVEPAVNGAKFVINAAAEAK-VKRVVITSSI 128 (342)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEeccc
Confidence 776644211111 12344554443 6789999853
No 344
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=50.39 E-value=76 Score=29.79 Aligned_cols=59 Identities=10% Similarity=-0.037 Sum_probs=39.0
Q ss_pred CCCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCC
Q 044572 298 YGASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNS 361 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~ 361 (457)
+++++| +-.|+|.+|..+++. .| .+|++++.+.+.++.....++.. ...++.++..|+.
T Consensus 11 ~~k~vl-ItG~~g~iG~~la~~l~~~G-~~Vi~~~r~~~~~~~~~~~l~~~---~~~~~~~~~~d~~ 72 (247)
T PRK08945 11 KDRIIL-VTGAGDGIGREAALTYARHG-ATVILLGRTEEKLEAVYDEIEAA---GGPQPAIIPLDLL 72 (247)
T ss_pred CCCEEE-EeCCCchHHHHHHHHHHHCC-CcEEEEeCCHHHHHHHHHHHHhc---CCCCceEEEeccc
Confidence 466676 444788888777643 23 38999999988776665555442 2235677777774
No 345
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=49.75 E-value=33 Score=36.87 Aligned_cols=42 Identities=21% Similarity=0.212 Sum_probs=35.4
Q ss_pred CCCeEEEEcccc-cHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH
Q 044572 298 YGASVTDLYAGA-GVIGLSLAAARKCRSVKCVEINKESQLSFEK 340 (457)
Q Consensus 298 ~~~~vLDl~cG~-G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~ 340 (457)
++.+|+=+|||. |..++..|+..|+ .|+++|.+++.++.+++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aes 206 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVES 206 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 578999999974 6677788887787 79999999999988875
No 346
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=49.36 E-value=73 Score=35.04 Aligned_cols=87 Identities=10% Similarity=-0.017 Sum_probs=53.6
Q ss_pred cccccHHHHHHHhh--CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC--cccc-cCCccEEEECCCC
Q 044572 306 YAGAGVIGLSLAAA--RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE--PLSW-LVGSDVLVVDPPR 380 (457)
Q Consensus 306 ~cG~G~~sl~lA~~--~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~--~~~~-~~~~D~vi~DPPR 380 (457)
=||-|-+|..+++. ....+++.||.|++.++.+++ . ....+.||+.+. +.+. ..+.|++|+-=+.
T Consensus 405 I~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~---~-------g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d 474 (601)
T PRK03659 405 IVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK---Y-------GYKVYYGDATQLELLRAAGAEKAEAIVITCNE 474 (601)
T ss_pred EecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh---C-------CCeEEEeeCCCHHHHHhcCCccCCEEEEEeCC
Confidence 38889998888763 123489999999999987753 1 136789999863 1111 2467776664443
Q ss_pred CCccHHHHHHHHhcCCCCcEEE
Q 044572 381 KGLDSSLVHALQSIGSAERKAK 402 (457)
Q Consensus 381 ~Gl~~~v~~~l~~~~~~~~ivy 402 (457)
......++..+++..+..+++.
T Consensus 475 ~~~n~~i~~~~r~~~p~~~Iia 496 (601)
T PRK03659 475 PEDTMKIVELCQQHFPHLHILA 496 (601)
T ss_pred HHHHHHHHHHHHHHCCCCeEEE
Confidence 2222345566666653334433
No 347
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=48.89 E-value=23 Score=34.64 Aligned_cols=29 Identities=14% Similarity=0.115 Sum_probs=22.0
Q ss_pred cEEEEEccCCcCcccccCCccEEEECCCCC
Q 044572 352 NISWHNADNSIEPLSWLVGSDVLVVDPPRK 381 (457)
Q Consensus 352 nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~ 381 (457)
++++.++|..+.+.. ...-|+|.+|||+.
T Consensus 155 ~v~i~~~Df~~~i~~-~~~~dfvYlDPPY~ 183 (266)
T TIGR00571 155 NTTFLCGSFEKILAM-VDDDSFVYCDPPYL 183 (266)
T ss_pred CCEEEECCHHHHHhh-cCCCCEEEECCCCC
Confidence 678999998776543 34557999999983
No 348
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=48.70 E-value=25 Score=33.29 Aligned_cols=117 Identities=17% Similarity=0.149 Sum_probs=59.3
Q ss_pred HHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCccc
Q 044572 287 ILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLS 366 (457)
Q Consensus 287 ~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~ 366 (457)
.+++++... +++..|-|+|||-+-++-.+.. .-.|...|..+. + + .++..|.......
T Consensus 62 ~iI~~l~~~-~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~-----------n-----~--~Vtacdia~vPL~ 119 (219)
T PF05148_consen 62 VIIEWLKKR-PKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP-----------N-----P--RVTACDIANVPLE 119 (219)
T ss_dssp HHHHHHCTS--TTS-EEEES-TT-HHHHH--S------EEEEESS-S-----------S-----T--TEEES-TTS-S--
T ss_pred HHHHHHHhc-CCCEEEEECCCchHHHHHhccc---CceEEEeeccCC-----------C-----C--CEEEecCccCcCC
Confidence 344444432 3567899999999999865542 126999998642 1 2 2467887665432
Q ss_pred ccCCccEEEECCCCCCc--cHHHHHHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHhcccc
Q 044572 367 WLVGSDVLVVDPPRKGL--DSSLVHALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEASVQI 430 (457)
Q Consensus 367 ~~~~~D~vi~DPPR~Gl--~~~v~~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~~~~~ 430 (457)
.+..|++|.=-.-.|- ..=+.++-+-++ ++++++|. +..+ .-...+.|+......+-..
T Consensus 120 -~~svDv~VfcLSLMGTn~~~fi~EA~RvLK-~~G~L~IA-EV~S--Rf~~~~~F~~~~~~~GF~~ 180 (219)
T PF05148_consen 120 -DESVDVAVFCLSLMGTNWPDFIREANRVLK-PGGILKIA-EVKS--RFENVKQFIKALKKLGFKL 180 (219)
T ss_dssp -TT-EEEEEEES---SS-HHHHHHHHHHHEE-EEEEEEEE-EEGG--G-S-HHHHHHHHHCTTEEE
T ss_pred -CCceeEEEEEhhhhCCCcHHHHHHHHheec-cCcEEEEE-Eecc--cCcCHHHHHHHHHHCCCeE
Confidence 3578998875554443 222445555565 77888874 3222 2224567777766555433
No 349
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=48.56 E-value=64 Score=32.74 Aligned_cols=76 Identities=12% Similarity=0.094 Sum_probs=44.1
Q ss_pred CCCeEEEEccc-ccH-HHHHHHhhCCCCEEEEEeCCHH---------------------HHHHHHHHHhhCCCCCCCcEE
Q 044572 298 YGASVTDLYAG-AGV-IGLSLAAARKCRSVKCVEINKE---------------------SQLSFEKTVSRLPKSVDGNIS 354 (457)
Q Consensus 298 ~~~~vLDl~cG-~G~-~sl~lA~~~~~~~V~gVE~~~~---------------------av~~A~~Na~~~~~~~~~nv~ 354 (457)
.+.+|+=+||| .|. ++..|++ .|.++++.||-+.- =++.|++.++.. |..-+++
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~-aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~i--np~v~i~ 99 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVR-AGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKI--NSEVEIV 99 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHH--CCCcEEE
Confidence 35778888886 444 4444444 67789999999851 123444555543 2223566
Q ss_pred EEEccCCc-CcccccCCccEEEE
Q 044572 355 WHNADNSI-EPLSWLVGSDVLVV 376 (457)
Q Consensus 355 ~~~~d~~~-~~~~~~~~~D~vi~ 376 (457)
.+..++.. .+......+|+||.
T Consensus 100 ~~~~~~~~~~~~~~~~~~DlVid 122 (338)
T PRK12475 100 PVVTDVTVEELEELVKEVDLIID 122 (338)
T ss_pred EEeccCCHHHHHHHhcCCCEEEE
Confidence 66666542 12223467897765
No 350
>PLN00198 anthocyanidin reductase; Provisional
Probab=48.29 E-value=1.5e+02 Score=29.45 Aligned_cols=74 Identities=19% Similarity=0.207 Sum_probs=42.5
Q ss_pred CCeEEEEcccccHHHHHHHhhC--CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc--ccccCCccEE
Q 044572 299 GASVTDLYAGAGVIGLSLAAAR--KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LSWLVGSDVL 374 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~~--~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~--~~~~~~~D~v 374 (457)
+.+|| +-.|+|.+|..+++.. ...+|+++..+......... .... ....+++++.+|+.+.. ......+|+|
T Consensus 9 ~~~vl-ItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~--~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v 84 (338)
T PLN00198 9 KKTAC-VIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAH-LRAL--QELGDLKIFGADLTDEESFEAPIAGCDLV 84 (338)
T ss_pred CCeEE-EECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH-HHhc--CCCCceEEEEcCCCChHHHHHHHhcCCEE
Confidence 45665 6777899999988631 12378888776543322211 1111 11136889999987642 1223467877
Q ss_pred EE
Q 044572 375 VV 376 (457)
Q Consensus 375 i~ 376 (457)
|.
T Consensus 85 ih 86 (338)
T PLN00198 85 FH 86 (338)
T ss_pred EE
Confidence 64
No 351
>PRK10904 DNA adenine methylase; Provisional
Probab=48.23 E-value=20 Score=35.16 Aligned_cols=46 Identities=22% Similarity=0.352 Sum_probs=36.3
Q ss_pred HHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHH
Q 044572 287 ILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQL 336 (457)
Q Consensus 287 ~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~ 336 (457)
.|+..|..+++...+.+|.|||.|++.+.+. ..+++.-|++++.+.
T Consensus 16 ~l~~~i~~~~P~~~~yvEPF~GggaV~l~~~----~~~~ilND~n~~Lin 61 (271)
T PRK10904 16 PLLDDIKRHLPKGECLIEPFVGAGSVFLNTD----FSRYILADINSDLIS 61 (271)
T ss_pred HHHHHHHHhCCCCCcEEeccCCcceeeEecC----CCeEEEEeCCHHHHH
Confidence 5667777777766789999999999987653 246788899998765
No 352
>PRK06125 short chain dehydrogenase; Provisional
Probab=47.87 E-value=1.3e+02 Score=28.42 Aligned_cols=75 Identities=19% Similarity=0.160 Sum_probs=46.9
Q ss_pred CCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc-----cccCC
Q 044572 299 GASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL-----SWLVG 370 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~-----~~~~~ 370 (457)
++++|=.| |+|.+|..++.. .|+ +|++++.+++..+.+...++.. ...++.++..|+.+... +....
T Consensus 7 ~k~vlItG-~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~~D~~~~~~~~~~~~~~g~ 81 (259)
T PRK06125 7 GKRVLITG-ASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAA---HGVDVAVHALDLSSPEAREQLAAEAGD 81 (259)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhh---cCCceEEEEecCCCHHHHHHHHHHhCC
Confidence 55666445 566677665532 344 8999999988777666555431 12467888888865311 11246
Q ss_pred ccEEEECC
Q 044572 371 SDVLVVDP 378 (457)
Q Consensus 371 ~D~vi~DP 378 (457)
.|++|.+.
T Consensus 82 id~lv~~a 89 (259)
T PRK06125 82 IDILVNNA 89 (259)
T ss_pred CCEEEECC
Confidence 88888765
No 353
>PRK06182 short chain dehydrogenase; Validated
Probab=47.61 E-value=2.3e+02 Score=27.03 Aligned_cols=70 Identities=14% Similarity=-0.020 Sum_probs=43.5
Q ss_pred CCeEEEEcccccHHHHHHHhhC--CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc--cc-------
Q 044572 299 GASVTDLYAGAGVIGLSLAAAR--KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL--SW------- 367 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~~--~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~--~~------- 367 (457)
++++| +-.|+|.+|..+++.. ...+|++++.+++.++... . .+++++.+|+.+... ..
T Consensus 3 ~k~vl-ItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~----~------~~~~~~~~Dv~~~~~~~~~~~~~~~~ 71 (273)
T PRK06182 3 KKVAL-VTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLA----S------LGVHPLSLDVTDEASIKAAVDTIIAE 71 (273)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----h------CCCeEEEeeCCCHHHHHHHHHHHHHh
Confidence 45566 4446777888877531 1248999999987664332 1 135788889876311 11
Q ss_pred cCCccEEEECCC
Q 044572 368 LVGSDVLVVDPP 379 (457)
Q Consensus 368 ~~~~D~vi~DPP 379 (457)
....|++|.+..
T Consensus 72 ~~~id~li~~ag 83 (273)
T PRK06182 72 EGRIDVLVNNAG 83 (273)
T ss_pred cCCCCEEEECCC
Confidence 136899998765
No 354
>PRK06196 oxidoreductase; Provisional
Probab=47.30 E-value=2.4e+02 Score=27.72 Aligned_cols=72 Identities=13% Similarity=0.008 Sum_probs=45.1
Q ss_pred CCCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc------cc-
Q 044572 298 YGASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL------SW- 367 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~------~~- 367 (457)
.++++|=.| |+|.+|..+++. .| .+|++++.+++..+.+...+. ++.++.+|+.+... ..
T Consensus 25 ~~k~vlITG-asggIG~~~a~~L~~~G-~~Vv~~~R~~~~~~~~~~~l~--------~v~~~~~Dl~d~~~v~~~~~~~~ 94 (315)
T PRK06196 25 SGKTAIVTG-GYSGLGLETTRALAQAG-AHVIVPARRPDVAREALAGID--------GVEVVMLDLADLESVRAFAERFL 94 (315)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhh--------hCeEEEccCCCHHHHHHHHHHHH
Confidence 456777444 667788777753 23 479999999876655443321 36788899876311 11
Q ss_pred --cCCccEEEECCC
Q 044572 368 --LVGSDVLVVDPP 379 (457)
Q Consensus 368 --~~~~D~vi~DPP 379 (457)
....|++|.+..
T Consensus 95 ~~~~~iD~li~nAg 108 (315)
T PRK06196 95 DSGRRIDILINNAG 108 (315)
T ss_pred hcCCCCCEEEECCC
Confidence 145798887653
No 355
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=46.73 E-value=32 Score=33.56 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=30.4
Q ss_pred CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHH
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTV 342 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na 342 (457)
+|.++||+|||.-..-+..|. .-+++|+..|..+..++..++=+
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~-~~f~~I~l~dy~~~N~~el~kWl 99 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSAC-EWFEEIVLSDYSEQNREELEKWL 99 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGG-GTEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHH-HhhcceEEeeccHhhHHHHHHHH
Confidence 578999999999666444443 34789999999999988666543
No 356
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=46.64 E-value=66 Score=29.91 Aligned_cols=33 Identities=24% Similarity=0.245 Sum_probs=23.4
Q ss_pred CCCeEEEEccc-ccH-HHHHHHhhCCCCEEEEEeCC
Q 044572 298 YGASVTDLYAG-AGV-IGLSLAAARKCRSVKCVEIN 331 (457)
Q Consensus 298 ~~~~vLDl~cG-~G~-~sl~lA~~~~~~~V~gVE~~ 331 (457)
.+.+|+=+||| .|. ++..|+. .|+++++.+|-+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~-~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAG-AGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH-cCCCeEEEecCC
Confidence 35778878886 455 4444554 678899999988
No 357
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=46.14 E-value=86 Score=32.14 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=35.9
Q ss_pred CCeEEEEcccccHHHHHHHhhC--------CCCEEEEEeCCHHHHHHHHHHHhh
Q 044572 299 GASVTDLYAGAGVIGLSLAAAR--------KCRSVKCVEINKESQLSFEKTVSR 344 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~~--------~~~~V~gVE~~~~av~~A~~Na~~ 344 (457)
.-.++++|+|.|.++.-+.+.. ...++.-||.|++..+.=+++++.
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 3479999999999987776532 256899999999988776666654
No 358
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=45.89 E-value=36 Score=34.21 Aligned_cols=42 Identities=12% Similarity=-0.024 Sum_probs=29.4
Q ss_pred CCCCeEEEEcccccHHHH---HHHhh-CCCCEEEEEeCCHHHHHHHHH
Q 044572 297 PYGASVTDLYAGAGVIGL---SLAAA-RKCRSVKCVEINKESQLSFEK 340 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl---~lA~~-~~~~~V~gVE~~~~av~~A~~ 340 (457)
..|++||=+|| |.+|+ .+|+. .++.+|+++|.+++-++.|++
T Consensus 162 ~~g~~VlV~G~--G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 162 KDRNVIGVWGD--GNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 46889987765 55554 44543 345689999999887777764
No 359
>PRK07102 short chain dehydrogenase; Provisional
Probab=45.22 E-value=1e+02 Score=28.77 Aligned_cols=73 Identities=11% Similarity=0.013 Sum_probs=46.8
Q ss_pred eEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc------cccCCc
Q 044572 301 SVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL------SWLVGS 371 (457)
Q Consensus 301 ~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~------~~~~~~ 371 (457)
+++ +-.|+|.+|..+++. .| .+|++++.+++..+...+++... ...+++++.+|+.+... .....+
T Consensus 3 ~vl-ItGas~giG~~~a~~l~~~G-~~Vi~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 77 (243)
T PRK07102 3 KIL-IIGATSDIARACARRYAAAG-ARLYLAARDVERLERLADDLRAR---GAVAVSTHELDILDTASHAAFLDSLPALP 77 (243)
T ss_pred EEE-EEcCCcHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHh---cCCeEEEEecCCCChHHHHHHHHHHhhcC
Confidence 455 445678888776653 23 47999999988776655554431 23478999999876421 111347
Q ss_pred cEEEECC
Q 044572 372 DVLVVDP 378 (457)
Q Consensus 372 D~vi~DP 378 (457)
|++|.+.
T Consensus 78 d~vv~~a 84 (243)
T PRK07102 78 DIVLIAV 84 (243)
T ss_pred CEEEECC
Confidence 9888754
No 360
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=45.04 E-value=1.1e+02 Score=31.82 Aligned_cols=89 Identities=15% Similarity=0.158 Sum_probs=54.3
Q ss_pred cccccHHHHHHHhh--CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc--ccc-cCCccEEEECCCC
Q 044572 306 YAGAGVIGLSLAAA--RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LSW-LVGSDVLVVDPPR 380 (457)
Q Consensus 306 ~cG~G~~sl~lA~~--~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~--~~~-~~~~D~vi~DPPR 380 (457)
-||.|.+|..++.. .....|+.+|.+++.++.++++ ..+.++.||+.+.. .+. ...+|.||+--+.
T Consensus 5 IiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~---------~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~ 75 (453)
T PRK09496 5 IVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR---------LDVRTVVGNGSSPDVLREAGAEDADLLIAVTDS 75 (453)
T ss_pred EECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh---------cCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCC
Confidence 36779999998873 1234899999999987766542 13578889886531 111 3568888776555
Q ss_pred CCccHHHHHHHHhcCCCCcEEEE
Q 044572 381 KGLDSSLVHALQSIGSAERKAKS 403 (457)
Q Consensus 381 ~Gl~~~v~~~l~~~~~~~~ivyv 403 (457)
......+...++.+.+...++..
T Consensus 76 ~~~n~~~~~~~r~~~~~~~ii~~ 98 (453)
T PRK09496 76 DETNMVACQIAKSLFGAPTTIAR 98 (453)
T ss_pred hHHHHHHHHHHHHhcCCCeEEEE
Confidence 44333344455555333444443
No 361
>PRK06138 short chain dehydrogenase; Provisional
Probab=45.03 E-value=2.6e+02 Score=25.96 Aligned_cols=74 Identities=16% Similarity=0.121 Sum_probs=46.5
Q ss_pred CCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc--c----c--
Q 044572 299 GASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL--S----W-- 367 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~--~----~-- 367 (457)
++++| +-.|+|.+|..+++. .| .+|+++..+.+..+........ ..++.++.+|+.+... + .
T Consensus 5 ~k~~l-ItG~sg~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~i~~ 77 (252)
T PRK06138 5 GRVAI-VTGAGSGIGRATAKLFAREG-ARVVVADRDAEAAERVAAAIAA-----GGRAFARQGDVGSAEAVEALVDFVAA 77 (252)
T ss_pred CcEEE-EeCCCchHHHHHHHHHHHCC-CeEEEecCCHHHHHHHHHHHhc-----CCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 45566 445567777776652 23 4799999998776655554431 2467889999876311 1 1
Q ss_pred -cCCccEEEECCC
Q 044572 368 -LVGSDVLVVDPP 379 (457)
Q Consensus 368 -~~~~D~vi~DPP 379 (457)
....|+||....
T Consensus 78 ~~~~id~vi~~ag 90 (252)
T PRK06138 78 RWGRLDVLVNNAG 90 (252)
T ss_pred HcCCCCEEEECCC
Confidence 146798887554
No 362
>PRK13753 dihydropteroate synthase; Provisional
Probab=44.43 E-value=20 Score=35.42 Aligned_cols=41 Identities=20% Similarity=0.206 Sum_probs=33.7
Q ss_pred EEECCCCCCCCCHH-HHHHHHHHHHhhCCCCCeEEEEccccc
Q 044572 270 ISLAPSSFGQANTR-AFDILLRKLQKYVPYGASVTDLYAGAG 310 (457)
Q Consensus 270 ~~i~~~~FfQ~n~~-~~~~l~~~i~~~~~~~~~vLDl~cG~G 310 (457)
+.+.|+||+..... ..+..++.+..++..|..|+|+|+-+.
T Consensus 8 lNvTPDSFsDGg~~~~~d~a~~~a~~m~~~GAdIIDIGgeST 49 (279)
T PRK13753 8 LNLTEDSFFDESRRLDPAGAVTAAIEMLRVGSDVVDVGPAAS 49 (279)
T ss_pred EeCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCC
Confidence 56789999988764 347778888888888999999999887
No 363
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=44.31 E-value=1e+02 Score=29.29 Aligned_cols=67 Identities=19% Similarity=0.147 Sum_probs=45.0
Q ss_pred cccccHHHHHHHhhC--CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC--cccc-cCCccEEEECCCC
Q 044572 306 YAGAGVIGLSLAAAR--KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE--PLSW-LVGSDVLVVDPPR 380 (457)
Q Consensus 306 ~cG~G~~sl~lA~~~--~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~--~~~~-~~~~D~vi~DPPR 380 (457)
-.|.|-+|..+|+.. ....|+.||.+++.++.+.... -.++.+++|+.+. +.+. ...+|++++.=..
T Consensus 5 IiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~--------~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~ 76 (225)
T COG0569 5 IIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADE--------LDTHVVIGDATDEDVLEEAGIDDADAVVAATGN 76 (225)
T ss_pred EECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhh--------cceEEEEecCCCHHHHHhcCCCcCCEEEEeeCC
Confidence 468888888888642 1248999999999987643321 1357888998763 2222 3578988886554
No 364
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=44.26 E-value=1.8e+02 Score=30.27 Aligned_cols=90 Identities=16% Similarity=0.155 Sum_probs=55.1
Q ss_pred CeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC--cccccCCccEE
Q 044572 300 ASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE--PLSWLVGSDVL 374 (457)
Q Consensus 300 ~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~--~~~~~~~~D~v 374 (457)
.+||=+|| |.+|...|.. .+..+|+..|.+++..+.+..+.. .++++++-|+.+. +......+|+|
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-------~~v~~~~vD~~d~~al~~li~~~d~V 72 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-------GKVEALQVDAADVDALVALIKDFDLV 72 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-------ccceeEEecccChHHHHHHHhcCCEE
Confidence 35677787 5555554432 233699999999998877765432 3678899898764 22334667866
Q ss_pred EE-CCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 375 VV-DPPRKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 375 i~-DPPR~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
|. =||.-++ .++++..+. ++-|+.
T Consensus 73 In~~p~~~~~--~i~ka~i~~----gv~yvD 97 (389)
T COG1748 73 INAAPPFVDL--TILKACIKT----GVDYVD 97 (389)
T ss_pred EEeCCchhhH--HHHHHHHHh----CCCEEE
Confidence 54 4554332 455555444 344554
No 365
>PRK08324 short chain dehydrogenase; Validated
Probab=44.03 E-value=1.7e+02 Score=32.71 Aligned_cols=74 Identities=18% Similarity=0.167 Sum_probs=47.4
Q ss_pred CCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc------ccc--
Q 044572 299 GASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP------LSW-- 367 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~------~~~-- 367 (457)
|+++| +-.|+|.+|..+++. .| .+|+.++.+++.++.+...+.. . .++.++..|+.+.. ...
T Consensus 422 gk~vL-VTGasggIG~~la~~L~~~G-a~Vvl~~r~~~~~~~~~~~l~~---~--~~v~~v~~Dvtd~~~v~~~~~~~~~ 494 (681)
T PRK08324 422 GKVAL-VTGAAGGIGKATAKRLAAEG-ACVVLADLDEEAAEAAAAELGG---P--DRALGVACDVTDEAAVQAAFEEAAL 494 (681)
T ss_pred CCEEE-EecCCCHHHHHHHHHHHHCc-CEEEEEeCCHHHHHHHHHHHhc---c--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence 56666 555577777776653 33 3899999999877665544332 1 46788899987531 111
Q ss_pred -cCCccEEEECCC
Q 044572 368 -LVGSDVLVVDPP 379 (457)
Q Consensus 368 -~~~~D~vi~DPP 379 (457)
.+..|+||.+--
T Consensus 495 ~~g~iDvvI~~AG 507 (681)
T PRK08324 495 AFGGVDIVVSNAG 507 (681)
T ss_pred HcCCCCEEEECCC
Confidence 136899887653
No 366
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=43.63 E-value=19 Score=35.58 Aligned_cols=41 Identities=17% Similarity=0.331 Sum_probs=32.4
Q ss_pred EEECCCCCCCCCHH-HHHHHHHHHHhhCCCCCeEEEEccccc
Q 044572 270 ISLAPSSFGQANTR-AFDILLRKLQKYVPYGASVTDLYAGAG 310 (457)
Q Consensus 270 ~~i~~~~FfQ~n~~-~~~~l~~~i~~~~~~~~~vLDl~cG~G 310 (457)
+.+.|+||+..... ..+..++.+.+++.+|..|+|+|+-+.
T Consensus 21 lNvTpDSFsdgg~~~~~~~a~~~a~~~~~~GAdIIDIGgeST 62 (282)
T PRK11613 21 LNVTPDSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGEST 62 (282)
T ss_pred EcCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCC
Confidence 56789999988764 456777888888888999999996444
No 367
>CHL00194 ycf39 Ycf39; Provisional
Probab=43.03 E-value=1.9e+02 Score=28.43 Aligned_cols=89 Identities=13% Similarity=0.117 Sum_probs=54.1
Q ss_pred EcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC--cccccCCccEEEECCC
Q 044572 305 LYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE--PLSWLVGSDVLVVDPP 379 (457)
Q Consensus 305 l~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~--~~~~~~~~D~vi~DPP 379 (457)
+..|+|.+|.++++. .| -+|+++..++..... ... .+++++.+|+.+. +.......|+||.=-.
T Consensus 5 VtGatG~iG~~lv~~Ll~~g-~~V~~l~R~~~~~~~----l~~------~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 5 VIGATGTLGRQIVRQALDEG-YQVRCLVRNLRKASF----LKE------WGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred EECCCcHHHHHHHHHHHHCC-CeEEEEEcChHHhhh----Hhh------cCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 677899999988753 22 379999887643211 111 2478999998763 2222356787775211
Q ss_pred -CC-C----------ccHHHHHHHHhcCCCCcEEEEec
Q 044572 380 -RK-G----------LDSSLVHALQSIGSAERKAKSLS 405 (457)
Q Consensus 380 -R~-G----------l~~~v~~~l~~~~~~~~ivyvs~ 405 (457)
+. + ....+++++.... .+++||+|+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~l~~aa~~~g-vkr~I~~Ss 110 (317)
T CHL00194 74 SRPSDLYNAKQIDWDGKLALIEAAKAAK-IKRFIFFSI 110 (317)
T ss_pred CCCCCccchhhhhHHHHHHHHHHHHHcC-CCEEEEecc
Confidence 11 0 0123566666664 789999985
No 368
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=42.84 E-value=57 Score=31.84 Aligned_cols=126 Identities=12% Similarity=0.037 Sum_probs=65.9
Q ss_pred HHHHHHHh--hCCCCCeEEEEcccccHHHHHHHhhC-----CCCEEEEEeCCHH-HHHHHHHHHhhCCCCCCCcEEEEEc
Q 044572 287 ILLRKLQK--YVPYGASVTDLYAGAGVIGLSLAAAR-----KCRSVKCVEINKE-SQLSFEKTVSRLPKSVDGNISWHNA 358 (457)
Q Consensus 287 ~l~~~i~~--~~~~~~~vLDl~cG~G~~sl~lA~~~-----~~~~V~gVE~~~~-av~~A~~Na~~~~~~~~~nv~~~~~ 358 (457)
.|+..+.+ ++.+...++|+|||-|.+|-.++... ....++.||.... .-.+. .++.. .....++=+..
T Consensus 5 Sli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~--~~~~~--~~~~~~~R~ri 80 (259)
T PF05206_consen 5 SLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADN--KIRKD--ESEPKFERLRI 80 (259)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchh--hhhcc--CCCCceEEEEE
Confidence 34444433 23467789999999999999999865 2347899998532 21111 12210 11124566667
Q ss_pred cCCcCccccc-----CCccEEEECCCCCCccH-HHHHHHHhcC-------CCCcEEEEeccCCCCCchhch
Q 044572 359 DNSIEPLSWL-----VGSDVLVVDPPRKGLDS-SLVHALQSIG-------SAERKAKSLSESSSSMVKEEK 416 (457)
Q Consensus 359 d~~~~~~~~~-----~~~D~vi~DPPR~Gl~~-~v~~~l~~~~-------~~~~ivyvs~~~~~c~~~~~~ 416 (457)
|+.++-.... ..-.+|++-===-|... -.+..|.... ...+++...||-.-|+.+...
T Consensus 81 DI~dl~l~~~~~~~~~~~~vv~isKHLCG~ATDlaLRcl~~~~~~~~~~~~~~gi~iA~CCHH~C~~~~yv 151 (259)
T PF05206_consen 81 DIKDLDLSKLPELQNDEKPVVAISKHLCGAATDLALRCLLNSQKLSEGNGSVRGIVIAPCCHHRCDWDSYV 151 (259)
T ss_pred EeeccchhhcccccCCCCcEEEEEccccccchhHHHHhhccCccccccCCccCeEEEEeCCCCcCCHHHhC
Confidence 7766422110 01112222111123322 2344444432 245777777777777766543
No 369
>PRK05650 short chain dehydrogenase; Provisional
Probab=42.78 E-value=2.8e+02 Score=26.33 Aligned_cols=73 Identities=18% Similarity=0.166 Sum_probs=45.9
Q ss_pred eEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc--c-------cc
Q 044572 301 SVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL--S-------WL 368 (457)
Q Consensus 301 ~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~--~-------~~ 368 (457)
++| +-.|+|.+|..+++. .| .+|+.++.+.+..+.+...++.. ..++.++.+|+.+... . ..
T Consensus 2 ~vl-VtGasggIG~~la~~l~~~g-~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~i~~~~ 75 (270)
T PRK05650 2 RVM-ITGAASGLGRAIALRWAREG-WRLALADVNEEGGEETLKLLREA----GGDGFYQRCDVRDYSQLTALAQACEEKW 75 (270)
T ss_pred EEE-EecCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhc----CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 344 344677777776643 23 47999999988777666555442 2467888999875311 1 11
Q ss_pred CCccEEEECCC
Q 044572 369 VGSDVLVVDPP 379 (457)
Q Consensus 369 ~~~D~vi~DPP 379 (457)
..+|++|.+-.
T Consensus 76 ~~id~lI~~ag 86 (270)
T PRK05650 76 GGIDVIVNNAG 86 (270)
T ss_pred CCCCEEEECCC
Confidence 46898888654
No 370
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=42.57 E-value=1.2e+02 Score=31.34 Aligned_cols=102 Identities=16% Similarity=0.073 Sum_probs=57.9
Q ss_pred CCCeEEEEcccccHHHHHHHhhC--CCCEEEEEeCCHHHHHH--HHHHHhhCCCCCCCcEEEEEccCCcCc--ccccC--
Q 044572 298 YGASVTDLYAGAGVIGLSLAAAR--KCRSVKCVEINKESQLS--FEKTVSRLPKSVDGNISWHNADNSIEP--LSWLV-- 369 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~--~~~~V~gVE~~~~av~~--A~~Na~~~~~~~~~nv~~~~~d~~~~~--~~~~~-- 369 (457)
.+.+|| +-.|+|.+|..+++.. ..-+|+++..+....+. ....... ...+++++.+|+.+.. .....
T Consensus 59 ~~~kVL-VtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~----~~~~v~~v~~Dl~d~~~l~~~~~~~ 133 (390)
T PLN02657 59 KDVTVL-VVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKK----ELPGAEVVFGDVTDADSLRKVLFSE 133 (390)
T ss_pred CCCEEE-EECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhh----hcCCceEEEeeCCCHHHHHHHHHHh
Confidence 467777 4558999998887531 12489999988754321 0111111 1135789999987632 11122
Q ss_pred --CccEEEEC--CCCCCc----------cHHHHHHHHhcCCCCcEEEEec
Q 044572 370 --GSDVLVVD--PPRKGL----------DSSLVHALQSIGSAERKAKSLS 405 (457)
Q Consensus 370 --~~D~vi~D--PPR~Gl----------~~~v~~~l~~~~~~~~ivyvs~ 405 (457)
.+|+||.. ++..+. ...+++++.+.. .+++||+|+
T Consensus 134 ~~~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~g-v~r~V~iSS 182 (390)
T PLN02657 134 GDPVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVG-AKHFVLLSA 182 (390)
T ss_pred CCCCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcC-CCEEEEEee
Confidence 58988842 221110 113455555554 678999984
No 371
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=42.57 E-value=2.8e+02 Score=25.70 Aligned_cols=72 Identities=22% Similarity=0.270 Sum_probs=45.1
Q ss_pred eEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc---------cccc
Q 044572 301 SVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP---------LSWL 368 (457)
Q Consensus 301 ~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~---------~~~~ 368 (457)
++| +..|+|.+|..+++. .| .+|++++.+++..+.+....+.. ..++.++.+|+.+.. .+..
T Consensus 3 ~vl-ItGa~g~lG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 76 (255)
T TIGR01963 3 TAL-VTGAASGIGLAIALALAAAG-ANVVVNDLGEAGAEAAAKVATDA----GGSVIYLVADVTKEDEIADMIAAAAAEF 76 (255)
T ss_pred EEE-EcCCcchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhc----CCceEEEECCCCCHHHHHHHHHHHHHhc
Confidence 344 455788888888853 23 38999999987665555443321 246888999987632 0112
Q ss_pred CCccEEEECC
Q 044572 369 VGSDVLVVDP 378 (457)
Q Consensus 369 ~~~D~vi~DP 378 (457)
...|+||...
T Consensus 77 ~~~d~vi~~a 86 (255)
T TIGR01963 77 GGLDILVNNA 86 (255)
T ss_pred CCCCEEEECC
Confidence 4578877644
No 372
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=42.53 E-value=64 Score=31.38 Aligned_cols=38 Identities=18% Similarity=0.383 Sum_probs=30.1
Q ss_pred EEECCCCCCCCCHH-HHHHHHHHHHhhCCCCCeEEEEcc
Q 044572 270 ISLAPSSFGQANTR-AFDILLRKLQKYVPYGASVTDLYA 307 (457)
Q Consensus 270 ~~i~~~~FfQ~n~~-~~~~l~~~i~~~~~~~~~vLDl~c 307 (457)
+.+.|+|||..... ..+.+++.+.+++..|..++|+|+
T Consensus 6 lN~tpdSF~dg~~~~~~~~~~~~a~~~~~~GA~iIDIG~ 44 (257)
T TIGR01496 6 VNVTPDSFSDGGRFLSVDKAVAHAERMLEEGADIIDVGG 44 (257)
T ss_pred EeCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECC
Confidence 56789999988764 346777888887778999999974
No 373
>PRK06197 short chain dehydrogenase; Provisional
Probab=42.46 E-value=1.6e+02 Score=28.75 Aligned_cols=77 Identities=13% Similarity=0.123 Sum_probs=48.9
Q ss_pred CCCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc------cc-
Q 044572 298 YGASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL------SW- 367 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~------~~- 367 (457)
.+++|| +-.|+|.+|..+|+. .| .+|+.+..+.+..+.+.+.+... ....++.++..|+.+... .+
T Consensus 15 ~~k~vl-ItGas~gIG~~~a~~l~~~G-~~vi~~~r~~~~~~~~~~~l~~~--~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 90 (306)
T PRK06197 15 SGRVAV-VTGANTGLGYETAAALAAKG-AHVVLAVRNLDKGKAAAARITAA--TPGADVTLQELDLTSLASVRAAADALR 90 (306)
T ss_pred CCCEEE-EcCCCCcHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHh--CCCCceEEEECCCCCHHHHHHHHHHHH
Confidence 456677 566778888877752 33 37999999887766665554431 112468899999876421 11
Q ss_pred --cCCccEEEECC
Q 044572 368 --LVGSDVLVVDP 378 (457)
Q Consensus 368 --~~~~D~vi~DP 378 (457)
....|++|.+.
T Consensus 91 ~~~~~iD~li~nA 103 (306)
T PRK06197 91 AAYPRIDLLINNA 103 (306)
T ss_pred hhCCCCCEEEECC
Confidence 13578887764
No 374
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=42.40 E-value=71 Score=31.43 Aligned_cols=40 Identities=18% Similarity=0.043 Sum_probs=33.9
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH
Q 044572 299 GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~ 340 (457)
..+||=-|||.|-++..+|.+ |. .|.|.|.|--|+-..+-
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~-G~-~~~gnE~S~~Mll~s~f 96 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKL-GY-AVQGNEFSYFMLLASNF 96 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhc-cc-eEEEEEchHHHHHHHHH
Confidence 468999999999999999986 43 89999999999765443
No 375
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=42.18 E-value=14 Score=36.32 Aligned_cols=49 Identities=24% Similarity=0.364 Sum_probs=40.8
Q ss_pred HHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHH
Q 044572 287 ILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSF 338 (457)
Q Consensus 287 ~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A 338 (457)
.++..|.++++++.+.+|.|+|.|+..+.++.. .+++.-|++++.+..-
T Consensus 14 ~l~~~i~~~lP~~~~y~EPF~GggaV~i~~~~~---~~~i~~Din~~Lvn~y 62 (274)
T COG0338 14 KLLDQIIPHLPEGVSYIEPFVGGGAVFINLAAK---KKYILNDINPDLVNLY 62 (274)
T ss_pred HHHHHHHHhCCCCceeeCCccCcceeeeehhhh---hhhhHhcCCHHHHHHH
Confidence 567788888886669999999999999988852 4899999999987643
No 376
>PRK08251 short chain dehydrogenase; Provisional
Probab=41.90 E-value=1.8e+02 Score=27.02 Aligned_cols=75 Identities=11% Similarity=0.100 Sum_probs=48.2
Q ss_pred CeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc------c---c
Q 044572 300 ASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL------S---W 367 (457)
Q Consensus 300 ~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~------~---~ 367 (457)
+++| +-.|+|.+|..+++. .+ .+|+.++.+++..+.....+... +...++.++.+|+.+... + .
T Consensus 3 k~vl-ItGas~giG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (248)
T PRK08251 3 QKIL-ITGASSGLGAGMAREFAAKG-RDLALCARRTDRLEELKAELLAR--YPGIKVAVAALDVNDHDQVFEVFAEFRDE 78 (248)
T ss_pred CEEE-EECCCCHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhh--CCCceEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4566 444688888877753 23 48999999988877666554431 112468899999876421 1 1
Q ss_pred cCCccEEEECC
Q 044572 368 LVGSDVLVVDP 378 (457)
Q Consensus 368 ~~~~D~vi~DP 378 (457)
.+..|++|.+.
T Consensus 79 ~~~id~vi~~a 89 (248)
T PRK08251 79 LGGLDRVIVNA 89 (248)
T ss_pred cCCCCEEEECC
Confidence 24578888764
No 377
>PLN02740 Alcohol dehydrogenase-like
Probab=41.48 E-value=48 Score=33.80 Aligned_cols=96 Identities=19% Similarity=0.022 Sum_probs=51.8
Q ss_pred CCCCeEEEEcc-cccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEcc-----CCcCccccc-C
Q 044572 297 PYGASVTDLYA-GAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNAD-----NSIEPLSWL-V 369 (457)
Q Consensus 297 ~~~~~vLDl~c-G~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d-----~~~~~~~~~-~ 369 (457)
..|++||=.++ +.|.+++.+|+..|+++|+++|.+++-++.|++ .+ .+ .++..+ ..+.+.... .
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~G---a~--~~i~~~~~~~~~~~~v~~~~~~ 267 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE----MG---IT--DFINPKDSDKPVHERIREMTGG 267 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----cC---Cc--EEEecccccchHHHHHHHHhCC
Confidence 46888876654 233344455666666689999999988877753 21 11 222211 111111111 2
Q ss_pred CccEEEECCCCCCccHHHHHHHHhcCCC-CcEEEEe
Q 044572 370 GSDVLVVDPPRKGLDSSLVHALQSIGSA-ERKAKSL 404 (457)
Q Consensus 370 ~~D~vi~DPPR~Gl~~~v~~~l~~~~~~-~~ivyvs 404 (457)
.+|+||- ..|-...+.+++..+.+. ++++.+.
T Consensus 268 g~dvvid---~~G~~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 268 GVDYSFE---CAGNVEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred CCCEEEE---CCCChHHHHHHHHhhhcCCCEEEEEc
Confidence 5887763 334333455555555544 6677664
No 378
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=41.43 E-value=1.5e+02 Score=26.11 Aligned_cols=88 Identities=17% Similarity=0.202 Sum_probs=57.2
Q ss_pred EcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc--ccccCCccEEEECCC
Q 044572 305 LYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LSWLVGSDVLVVDPP 379 (457)
Q Consensus 305 l~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~--~~~~~~~D~vi~DPP 379 (457)
+..|+|.+|..+++. .+ -+|+++=.+++-.+. . .+++++.+|..+.. .......|+||.--+
T Consensus 3 V~GatG~vG~~l~~~L~~~~-~~V~~~~R~~~~~~~------~------~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~ 69 (183)
T PF13460_consen 3 VFGATGFVGRALAKQLLRRG-HEVTALVRSPSKAED------S------PGVEIIQGDLFDPDSVKAALKGADAVIHAAG 69 (183)
T ss_dssp EETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGHHH------C------TTEEEEESCTTCHHHHHHHHTTSSEEEECCH
T ss_pred EECCCChHHHHHHHHHHHCC-CEEEEEecCchhccc------c------cccccceeeehhhhhhhhhhhhcchhhhhhh
Confidence 456789888887753 33 589999999885543 1 46899999998741 222357887776443
Q ss_pred CCCccH----HHHHHHHhcCCCCcEEEEecc
Q 044572 380 RKGLDS----SLVHALQSIGSAERKAKSLSE 406 (457)
Q Consensus 380 R~Gl~~----~v~~~l~~~~~~~~ivyvs~~ 406 (457)
...-+. .+++++.+.. .++++++|+-
T Consensus 70 ~~~~~~~~~~~~~~a~~~~~-~~~~v~~s~~ 99 (183)
T PF13460_consen 70 PPPKDVDAAKNIIEAAKKAG-VKRVVYLSSA 99 (183)
T ss_dssp STTTHHHHHHHHHHHHHHTT-SSEEEEEEET
T ss_pred hhcccccccccccccccccc-cccceeeecc
Confidence 211112 3556666664 7899999853
No 379
>PRK07109 short chain dehydrogenase; Provisional
Probab=41.21 E-value=3.8e+02 Score=26.77 Aligned_cols=75 Identities=17% Similarity=0.079 Sum_probs=48.7
Q ss_pred CCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc--c-------
Q 044572 299 GASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL--S------- 366 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~--~------- 366 (457)
++++| +-.|+|.+|..+++. .| .+|+.++.+++.++...+.++.. ..++.++.+|+.+... .
T Consensus 8 ~k~vl-ITGas~gIG~~la~~la~~G-~~Vvl~~R~~~~l~~~~~~l~~~----g~~~~~v~~Dv~d~~~v~~~~~~~~~ 81 (334)
T PRK07109 8 RQVVV-ITGASAGVGRATARAFARRG-AKVVLLARGEEGLEALAAEIRAA----GGEALAVVADVADAEAVQAAADRAEE 81 (334)
T ss_pred CCEEE-EECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHc----CCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 45555 445677777777642 23 47999999998887776666542 1467889999876311 1
Q ss_pred ccCCccEEEECCC
Q 044572 367 WLVGSDVLVVDPP 379 (457)
Q Consensus 367 ~~~~~D~vi~DPP 379 (457)
..+..|++|.+.-
T Consensus 82 ~~g~iD~lInnAg 94 (334)
T PRK07109 82 ELGPIDTWVNNAM 94 (334)
T ss_pred HCCCCCEEEECCC
Confidence 1246898887654
No 380
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=41.09 E-value=3e+02 Score=28.56 Aligned_cols=115 Identities=15% Similarity=0.100 Sum_probs=65.7
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCeEEEEcccccHHHHHHHhhC--CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEE
Q 044572 278 GQANTRAFDILLRKLQKYVPYGASVTDLYAGAGVIGLSLAAAR--KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISW 355 (457)
Q Consensus 278 fQ~n~~~~~~l~~~i~~~~~~~~~vLDl~cG~G~~sl~lA~~~--~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~ 355 (457)
+..+....+.+............+++ -||.|.+|..+++.. ....|+.||.+++.++.+++.. ..+.+
T Consensus 210 v~g~~~~l~~~~~~~~~~~~~~~~ii--IiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~--------~~~~~ 279 (453)
T PRK09496 210 FIGAREHIRAVMSEFGRLEKPVKRVM--IVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL--------PNTLV 279 (453)
T ss_pred EEeCHHHHHHHHHHhCccCCCCCEEE--EECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC--------CCCeE
Confidence 33455555555544433222345666 566788888877642 1247999999999887766531 23567
Q ss_pred EEccCCcCc--cc-ccCCccEEEECCCCCCccHHHHHHHHhcCCCCcEEEE
Q 044572 356 HNADNSIEP--LS-WLVGSDVLVVDPPRKGLDSSLVHALQSIGSAERKAKS 403 (457)
Q Consensus 356 ~~~d~~~~~--~~-~~~~~D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyv 403 (457)
+.||+.+.. .+ ....+|+|++-.+.....-.+...++.+. ..+++..
T Consensus 280 i~gd~~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~-~~~ii~~ 329 (453)
T PRK09496 280 LHGDGTDQELLEEEGIDEADAFIALTNDDEANILSSLLAKRLG-AKKVIAL 329 (453)
T ss_pred EECCCCCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhC-CCeEEEE
Confidence 899987531 11 12568888886665432222222234443 4455444
No 381
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=40.95 E-value=57 Score=32.18 Aligned_cols=87 Identities=10% Similarity=-0.108 Sum_probs=49.4
Q ss_pred CCCeEEEEcc-cccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572 298 YGASVTDLYA-GAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV 376 (457)
Q Consensus 298 ~~~~vLDl~c-G~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~ 376 (457)
.++++|=+|| |.|.+++.+|+..|++.|+++|.+++-++.|++.. . + |..+. ....+|+||-
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~------~------i--~~~~~---~~~g~Dvvid 206 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE------V------L--DPEKD---PRRDYRAIYD 206 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc------c------c--Chhhc---cCCCCCEEEE
Confidence 4666775654 45566677777778888889999887766554320 0 0 00000 1235787663
Q ss_pred CCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 377 DPPRKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 377 DPPR~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
- .|-...+..++..+++.++++++.
T Consensus 207 -~--~G~~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 207 -A--SGDPSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred -C--CCCHHHHHHHHHhhhcCcEEEEEe
Confidence 2 333233444555566667777664
No 382
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=40.59 E-value=56 Score=33.15 Aligned_cols=44 Identities=20% Similarity=0.178 Sum_probs=31.1
Q ss_pred CCCCeEEEEcc-cccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH
Q 044572 297 PYGASVTDLYA-GAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340 (457)
Q Consensus 297 ~~~~~vLDl~c-G~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~ 340 (457)
..|++||=.++ +.|.+++.+|+..|+.+|+++|.+++-.+.|++
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 46788876654 234455556766676689999999998887754
No 383
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=40.57 E-value=1.2e+02 Score=30.30 Aligned_cols=97 Identities=22% Similarity=0.201 Sum_probs=52.3
Q ss_pred CCCCeEEEEcc-cccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCC--cCccccc--CCc
Q 044572 297 PYGASVTDLYA-GAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNS--IEPLSWL--VGS 371 (457)
Q Consensus 297 ~~~~~vLDl~c-G~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~--~~~~~~~--~~~ 371 (457)
.++++||=.++ +.|.+++.+|+..|++.|++++.+++-.+.+++ .+ .+ .++..+-. +.+.... ..+
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~G---a~--~~i~~~~~~~~~~~~~~~~~~~ 229 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LG---AM--QTFNSREMSAPQIQSVLRELRF 229 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cC---Cc--eEecCcccCHHHHHHHhcCCCC
Confidence 36778776654 233444556666677678999999988777643 11 11 12211111 1111111 257
Q ss_pred cEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 372 DVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 372 D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
|.+++|- .|-...+.+.+..+++.++++.+.
T Consensus 230 d~~v~d~--~G~~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 230 DQLILET--AGVPQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred CeEEEEC--CCCHHHHHHHHHHhhcCCEEEEEc
Confidence 7677773 343334455556666667777664
No 384
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=40.34 E-value=1e+02 Score=27.88 Aligned_cols=30 Identities=30% Similarity=0.295 Sum_probs=20.3
Q ss_pred EEEEccc-ccH-HHHHHHhhCCCCEEEEEeCCH
Q 044572 302 VTDLYAG-AGV-IGLSLAAARKCRSVKCVEINK 332 (457)
Q Consensus 302 vLDl~cG-~G~-~sl~lA~~~~~~~V~gVE~~~ 332 (457)
|+=+||| .|. ++..|++ .|..+++.+|.+.
T Consensus 2 VlViG~GglGs~ia~~La~-~Gvg~i~lvD~D~ 33 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLAR-SGVGNLKLVDFDV 33 (174)
T ss_pred EEEECcCHHHHHHHHHHHH-cCCCeEEEEeCCE
Confidence 4556665 455 4445554 6788999999886
No 385
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=39.87 E-value=3e+02 Score=25.29 Aligned_cols=75 Identities=23% Similarity=0.237 Sum_probs=47.6
Q ss_pred CCeEEEEcccccHHHHHHHhh---CCCCEEEEE-eCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc------cc-
Q 044572 299 GASVTDLYAGAGVIGLSLAAA---RKCRSVKCV-EINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL------SW- 367 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gV-E~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~------~~- 367 (457)
++++| +-.|+|.+|..+++. .+ .+|+.+ +.+++..+......... ..++.++.+|+.+... .+
T Consensus 5 ~~~il-I~Gasg~iG~~la~~l~~~g-~~v~~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (247)
T PRK05565 5 GKVAI-VTGASGGIGRAIAELLAKEG-AKVVIAYDINEEAAQELLEEIKEE----GGDAIAVKADVSSEEDVENLVEQIV 78 (247)
T ss_pred CCEEE-EeCCCcHHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHHHHhc----CCeEEEEECCCCCHHHHHHHHHHHH
Confidence 34555 455688888887653 23 367887 98887776665554431 2468899999875321 11
Q ss_pred --cCCccEEEECCC
Q 044572 368 --LVGSDVLVVDPP 379 (457)
Q Consensus 368 --~~~~D~vi~DPP 379 (457)
...+|+||....
T Consensus 79 ~~~~~id~vi~~ag 92 (247)
T PRK05565 79 EKFGKIDILVNNAG 92 (247)
T ss_pred HHhCCCCEEEECCC
Confidence 136899988764
No 386
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=39.56 E-value=1.2e+02 Score=33.44 Aligned_cols=86 Identities=13% Similarity=0.072 Sum_probs=49.7
Q ss_pred ccccHHHHHHHhh--CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc--ccc-cCCccEEEECCCCC
Q 044572 307 AGAGVIGLSLAAA--RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LSW-LVGSDVLVVDPPRK 381 (457)
Q Consensus 307 cG~G~~sl~lA~~--~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~--~~~-~~~~D~vi~DPPR~ 381 (457)
||-|.+|..+++. ....+++.||.|++.++.+++ . ....+.||+.+.. .+. .++.|++|+-=+..
T Consensus 406 ~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~---~-------g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~ 475 (621)
T PRK03562 406 AGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK---F-------GMKVFYGDATRMDLLESAGAAKAEVLINAIDDP 475 (621)
T ss_pred EecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh---c-------CCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCH
Confidence 7777788777752 222479999999999988754 1 1367899988641 111 24577665522221
Q ss_pred CccHHHHHHHHhcCCCCcEEEE
Q 044572 382 GLDSSLVHALQSIGSAERKAKS 403 (457)
Q Consensus 382 Gl~~~v~~~l~~~~~~~~ivyv 403 (457)
.....+...+++.. ++--+++
T Consensus 476 ~~n~~i~~~ar~~~-p~~~iia 496 (621)
T PRK03562 476 QTSLQLVELVKEHF-PHLQIIA 496 (621)
T ss_pred HHHHHHHHHHHHhC-CCCeEEE
Confidence 11223455555554 3433444
No 387
>COG3087 FtsN Cell division protein [Cell division and chromosome partitioning]
Probab=39.20 E-value=1.2e+02 Score=29.63 Aligned_cols=34 Identities=9% Similarity=0.169 Sum_probs=18.6
Q ss_pred CccCCCCCCCcCccCccCccCCchHHHHHHHHHHHhcCCC
Q 044572 49 TCALQCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLL 88 (457)
Q Consensus 49 Rv~p~C~~f~~CGGC~lqh~~~~~~~~~~~~~~l~r~g~~ 88 (457)
-+...=.||-.||. ++.+.+-+.++-.|.=+|++
T Consensus 184 ~~~~~~~~~LQcGa------Fk~~~qAE~~rA~LAmlG~s 217 (264)
T COG3087 184 EDAAETRYMLQCGA------FKTAEQAESVRAQLAMLGIS 217 (264)
T ss_pred ccccccceEEeecc------cccHHHHHHHHHHHHhcccc
Confidence 34444578889994 44433434444445555664
No 388
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=38.78 E-value=60 Score=31.45 Aligned_cols=93 Identities=16% Similarity=0.084 Sum_probs=50.2
Q ss_pred CCCeEEEEcccccHHH---HHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEc-cCCcCcccc--cCCc
Q 044572 298 YGASVTDLYAGAGVIG---LSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNA-DNSIEPLSW--LVGS 371 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~s---l~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~-d~~~~~~~~--~~~~ 371 (457)
++++||=.++ |.+| +.+|+..|+.+|+++|.+++-.+.|++ ++ .+ .++.. +..+..... ...+
T Consensus 120 ~g~~VlV~G~--G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~G---a~--~~i~~~~~~~~~~~~~~~~g~ 188 (280)
T TIGR03366 120 KGRRVLVVGA--GMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FG---AT--ALAEPEVLAERQGGLQNGRGV 188 (280)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cC---Cc--EecCchhhHHHHHHHhCCCCC
Confidence 5778876644 5555 445555667679999999888777654 21 11 11111 111111111 1358
Q ss_pred cEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 372 DVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 372 D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
|+||- -.|-...+...+..+++.++++.+.
T Consensus 189 d~vid---~~G~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 189 DVALE---FSGATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred CEEEE---CCCChHHHHHHHHHhcCCCEEEEec
Confidence 88763 2333333455566666667777765
No 389
>PRK05398 formyl-coenzyme A transferase; Provisional
Probab=38.44 E-value=80 Score=33.00 Aligned_cols=95 Identities=21% Similarity=0.066 Sum_probs=54.5
Q ss_pred CCCeEEEEccc-ccHH-HHHHHhhCCCCEEEEEeCC--HHHHHHH---------HHHHhhCCCCCCCcEEEEEccCCcC-
Q 044572 298 YGASVTDLYAG-AGVI-GLSLAAARKCRSVKCVEIN--KESQLSF---------EKTVSRLPKSVDGNISWHNADNSIE- 363 (457)
Q Consensus 298 ~~~~vLDl~cG-~G~~-sl~lA~~~~~~~V~gVE~~--~~av~~A---------~~Na~~~~~~~~~nv~~~~~d~~~~- 363 (457)
+|-+|||+... .|-+ +..||.. | ..|+=||-- .+..... -.-...| .|=+.+..|..+.
T Consensus 6 ~GirVldls~~~aGP~a~~lLAdl-G-A~VIKVE~p~~GD~~R~~~~~~~~~~s~~f~~~N-----rgKrsi~lDLk~~e 78 (416)
T PRK05398 6 EGIKVLDFTHVQSGPSCTQLLAWF-G-ADVIKVERPGVGDVTRNQLRDIPDVDSLYFTMLN-----SNKRSITLDTKTPE 78 (416)
T ss_pred CCCEEEEeccHHHHHHHHHHHHHc-C-CCEEEecCCCCCCcccccCCCCCCcccHHHHHcC-----CCCeEEEeeCCCHH
Confidence 58899999887 4654 4556654 4 489999843 1111100 0001111 1225566676532
Q ss_pred ----cccccCCccEEEECC-C----CCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 364 ----PLSWLVGSDVLVVDP-P----RKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 364 ----~~~~~~~~D~vi~DP-P----R~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
+.++....||||-|= | |-|++.+.+. +. ..+|||+|
T Consensus 79 Gr~~l~~Lv~~ADVvien~rpg~~~rlGl~~e~L~---~~--nP~LI~~s 123 (416)
T PRK05398 79 GKEVLEKLIREADVLVENFGPGALDRMGFTWERIQ---EI--NPRLIVAS 123 (416)
T ss_pred HHHHHHHHHhcCCEEEECCCcchHHHcCCCHHHHH---hh--CcCEEEEE
Confidence 233446789999883 3 5688776543 44 46799987
No 390
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=38.36 E-value=60 Score=32.89 Aligned_cols=96 Identities=20% Similarity=0.102 Sum_probs=52.8
Q ss_pred CCCCeEEEEcc-cccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCc---Ccccc-cCCc
Q 044572 297 PYGASVTDLYA-GAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSI---EPLSW-LVGS 371 (457)
Q Consensus 297 ~~~~~vLDl~c-G~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~---~~~~~-~~~~ 371 (457)
.++++||=.++ +.|.+++.+|+..|+++|+++|.+++-.+.+++ ++ .+ .++..+-.+ .+... ...+
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~G---a~--~~i~~~~~~~~~~i~~~~~~g~ 260 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LG---AT--ATVNAGDPNAVEQVRELTGGGV 260 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cC---Cc--eEeCCCchhHHHHHHHHhCCCC
Confidence 46777776654 234455556666677689999999998887754 21 11 122211111 11111 1257
Q ss_pred cEEEECCCCCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 372 DVLVVDPPRKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 372 D~vi~DPPR~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
|+||- -.|-...+...+..+++.++++.+.
T Consensus 261 d~vid---~~G~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 261 DYAFE---MAGSVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred CEEEE---CCCChHHHHHHHHHHhcCCEEEEEc
Confidence 87763 2233334455556666667777664
No 391
>PRK07832 short chain dehydrogenase; Provisional
Probab=38.36 E-value=3.5e+02 Score=25.68 Aligned_cols=71 Identities=13% Similarity=-0.047 Sum_probs=42.4
Q ss_pred EcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc------cc---ccCCcc
Q 044572 305 LYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP------LS---WLVGSD 372 (457)
Q Consensus 305 l~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~------~~---~~~~~D 372 (457)
+-.|+|.+|..+++. .| .+|+.++.+++.++.+...++..+ ...+.++..|+.+.. .+ .....|
T Consensus 5 ItGas~giG~~la~~la~~G-~~vv~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (272)
T PRK07832 5 VTGAASGIGRATALRLAAQG-AELFLTDRDADGLAQTVADARALG---GTVPEHRALDISDYDAVAAFAADIHAAHGSMD 80 (272)
T ss_pred EeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcC---CCcceEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 345677777776542 23 369999999887776655554321 123456778876521 11 124579
Q ss_pred EEEECCC
Q 044572 373 VLVVDPP 379 (457)
Q Consensus 373 ~vi~DPP 379 (457)
++|.+.-
T Consensus 81 ~lv~~ag 87 (272)
T PRK07832 81 VVMNIAG 87 (272)
T ss_pred EEEECCC
Confidence 8887663
No 392
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=38.34 E-value=69 Score=31.17 Aligned_cols=38 Identities=21% Similarity=0.428 Sum_probs=30.0
Q ss_pred EEECCCCCCCCCHH-HHHHHHHHHHhhCCCCCeEEEEcc
Q 044572 270 ISLAPSSFGQANTR-AFDILLRKLQKYVPYGASVTDLYA 307 (457)
Q Consensus 270 ~~i~~~~FfQ~n~~-~~~~l~~~i~~~~~~~~~vLDl~c 307 (457)
+.+.|+|||-.... ..+.+++.+.+++..|..++|+|+
T Consensus 7 lN~tpdSF~dg~~~~~~~~~~~~a~~~~~~GAdiIDIG~ 45 (257)
T cd00739 7 LNVTPDSFSDGGRFLSLDKAVAHAEKMIAEGADIIDIGG 45 (257)
T ss_pred EcCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECC
Confidence 56789999986643 346777888888888999999995
No 393
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=38.17 E-value=4e+02 Score=29.72 Aligned_cols=77 Identities=19% Similarity=0.147 Sum_probs=48.2
Q ss_pred CCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc--cc------
Q 044572 299 GASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL--SW------ 367 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~--~~------ 367 (457)
++++| +-.|+|.+|..+++. .| .+|++++.+.+..+.....+... ....++.++.+|+.+... ..
T Consensus 414 gkvvL-VTGasggIG~aiA~~La~~G-a~Vvi~~r~~~~~~~~~~~l~~~--~~~~~~~~v~~Dvtd~~~v~~a~~~i~~ 489 (676)
T TIGR02632 414 RRVAF-VTGGAGGIGRETARRLAAEG-AHVVLADLNLEAAEAVAAEINGQ--FGAGRAVALKMDVTDEQAVKAAFADVAL 489 (676)
T ss_pred CCEEE-EeCCCcHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHHhh--cCCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 56666 556678888777653 23 48999999988776655444321 112356788899875311 10
Q ss_pred -cCCccEEEECCC
Q 044572 368 -LVGSDVLVVDPP 379 (457)
Q Consensus 368 -~~~~D~vi~DPP 379 (457)
.+..|++|.+.-
T Consensus 490 ~~g~iDilV~nAG 502 (676)
T TIGR02632 490 AYGGVDIVVNNAG 502 (676)
T ss_pred hcCCCcEEEECCC
Confidence 136898887664
No 394
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=38.01 E-value=1.2e+02 Score=33.59 Aligned_cols=96 Identities=16% Similarity=0.113 Sum_probs=58.3
Q ss_pred CCCeEEEEcccccHHHHHHHhhC---CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC---cccccCCc
Q 044572 298 YGASVTDLYAGAGVIGLSLAAAR---KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE---PLSWLVGS 371 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~---~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~---~~~~~~~~ 371 (457)
.+++|| +-.|+|.+|-++++.. +.-+|++++........ .. ...+++++.+|+.+. +......+
T Consensus 314 ~~~~VL-VTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~------~~---~~~~~~~~~gDl~d~~~~l~~~l~~~ 383 (660)
T PRK08125 314 RRTRVL-ILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISR------FL---GHPRFHFVEGDISIHSEWIEYHIKKC 383 (660)
T ss_pred cCCEEE-EECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhh------hc---CCCceEEEeccccCcHHHHHHHhcCC
Confidence 467777 6778999999998632 12489999987643211 11 124689999999753 12223568
Q ss_pred cEEEE-----CCCCCCcc------------HHHHHHHHhcCCCCcEEEEec
Q 044572 372 DVLVV-----DPPRKGLD------------SSLVHALQSIGSAERKAKSLS 405 (457)
Q Consensus 372 D~vi~-----DPPR~Gl~------------~~v~~~l~~~~~~~~ivyvs~ 405 (457)
|+||- .|.....+ ..+++++.+.. .++||+||
T Consensus 384 D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~--~~~V~~SS 432 (660)
T PRK08125 384 DVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN--KRIIFPST 432 (660)
T ss_pred CEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC--CeEEEEcc
Confidence 98873 33221111 12455555553 68999985
No 395
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=37.81 E-value=21 Score=30.78 Aligned_cols=52 Identities=13% Similarity=0.093 Sum_probs=33.7
Q ss_pred cEEEEEccCCcCcccccCCccEEEECC--CCCCc---cHHHHHHHHhcCCCCcEEEE
Q 044572 352 NISWHNADNSIEPLSWLVGSDVLVVDP--PRKGL---DSSLVHALQSIGSAERKAKS 403 (457)
Q Consensus 352 nv~~~~~d~~~~~~~~~~~~D~vi~DP--PR~Gl---~~~v~~~l~~~~~~~~ivyv 403 (457)
+.++..||+.+.+.++...+|+|++|+ |+..- +.++++.|..+..++.++..
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~T 88 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLAT 88 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEE
Confidence 467788998877766667899999998 44322 35788888887655555544
No 396
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=37.42 E-value=2.6e+02 Score=25.36 Aligned_cols=43 Identities=21% Similarity=0.230 Sum_probs=25.2
Q ss_pred CCCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHH
Q 044572 298 YGASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTV 342 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na 342 (457)
.+.+++=+ .|+|.+|..++.. .+ .+|+.+..+.+-.+.....+
T Consensus 27 ~~~~vlVl-GgtG~iG~~~a~~l~~~g-~~V~l~~R~~~~~~~l~~~l 72 (194)
T cd01078 27 KGKTAVVL-GGTGPVGQRAAVLLAREG-ARVVLVGRDLERAQKAADSL 72 (194)
T ss_pred CCCEEEEE-CCCCHHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHH
Confidence 45677644 4456665544432 23 48999998877655544433
No 397
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=36.78 E-value=28 Score=36.17 Aligned_cols=12 Identities=0% Similarity=-0.141 Sum_probs=5.6
Q ss_pred CceEEEeecCcc
Q 044572 114 SPLIGLYQEGTH 125 (457)
Q Consensus 114 ~~~vGf~~~~s~ 125 (457)
++.|-++..+.+
T Consensus 333 kW~VEnq~~~~~ 344 (480)
T KOG2675|consen 333 KWRVENQENNKN 344 (480)
T ss_pred eEEEeeecCCcc
Confidence 445555444433
No 398
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=36.59 E-value=2.3e+02 Score=28.30 Aligned_cols=101 Identities=15% Similarity=0.095 Sum_probs=54.0
Q ss_pred CCeEEEEcccccHHHHHHHhhC--CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc--cccc--CCcc
Q 044572 299 GASVTDLYAGAGVIGLSLAAAR--KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LSWL--VGSD 372 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~~--~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~--~~~~--~~~D 372 (457)
+++|| +-.|+|.+|..+++.. ...+|++++.++............ ..+++++.+|+.+.. .... ..+|
T Consensus 4 ~k~il-ItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~d 77 (349)
T TIGR02622 4 GKKVL-VTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNL-----AKKIEDHFGDIRDAAKLRKAIAEFKPE 77 (349)
T ss_pred CCEEE-EECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhh-----cCCceEEEccCCCHHHHHHHHhhcCCC
Confidence 56666 4457888888777631 124799999876543222111111 135778889987532 1111 1468
Q ss_pred EEEECCCCCC--c---------------cHHHHHHHHhcCCCCcEEEEec
Q 044572 373 VLVVDPPRKG--L---------------DSSLVHALQSIGSAERKAKSLS 405 (457)
Q Consensus 373 ~vi~DPPR~G--l---------------~~~v~~~l~~~~~~~~ivyvs~ 405 (457)
+||.---... . ...+++++......+++||+||
T Consensus 78 ~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS 127 (349)
T TIGR02622 78 IVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS 127 (349)
T ss_pred EEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 7765332110 0 0123444444332568999986
No 399
>PLN02583 cinnamoyl-CoA reductase
Probab=36.47 E-value=3.9e+02 Score=25.97 Aligned_cols=106 Identities=19% Similarity=0.189 Sum_probs=54.7
Q ss_pred CCCeEEEEcccccHHHHHHHhhC--CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc--ccccCCccE
Q 044572 298 YGASVTDLYAGAGVIGLSLAAAR--KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LSWLVGSDV 373 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~--~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~--~~~~~~~D~ 373 (457)
++++|| +-.|+|.+|..+++.. ..-+|+++..+....+. ...+.... ....+++++.+|+.+.. .......|.
T Consensus 5 ~~k~vl-VTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~~~-~~~~~~l~-~~~~~~~~~~~Dl~d~~~~~~~l~~~d~ 81 (297)
T PLN02583 5 SSKSVC-VMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEI-EKEIRGLS-CEEERLKVFDVDPLDYHSILDALKGCSG 81 (297)
T ss_pred CCCEEE-EECCCCHHHHHHHHHHHhCCCEEEEEEcCchhhhH-HHHHHhcc-cCCCceEEEEecCCCHHHHHHHHcCCCE
Confidence 345666 5667888888876531 12478888764322111 11111110 01236888999987632 122345676
Q ss_pred EE--ECCCCCCc-------------cHHHHHHHHhcCCCCcEEEEecc
Q 044572 374 LV--VDPPRKGL-------------DSSLVHALQSIGSAERKAKSLSE 406 (457)
Q Consensus 374 vi--~DPPR~Gl-------------~~~v~~~l~~~~~~~~ivyvs~~ 406 (457)
|+ ..|+.... ...+++++.+....+++|++||.
T Consensus 82 v~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS~ 129 (297)
T PLN02583 82 LFCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSSL 129 (297)
T ss_pred EEEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecch
Confidence 65 33432110 01234444443235799999864
No 400
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=36.33 E-value=1.1e+02 Score=31.16 Aligned_cols=76 Identities=17% Similarity=0.147 Sum_probs=43.6
Q ss_pred CCCeEEEEccc-ccH-HHHHHHhhCCCCEEEEEeCCH---------------------HHHHHHHHHHhhCCCCCCCcEE
Q 044572 298 YGASVTDLYAG-AGV-IGLSLAAARKCRSVKCVEINK---------------------ESQLSFEKTVSRLPKSVDGNIS 354 (457)
Q Consensus 298 ~~~~vLDl~cG-~G~-~sl~lA~~~~~~~V~gVE~~~---------------------~av~~A~~Na~~~~~~~~~nv~ 354 (457)
...+|+=+||| .|. ++..||. .|.++++.||-+. .-++.|++.++.. |..-+++
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~-aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~i--np~v~v~ 99 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVR-AGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEI--NSDVRVE 99 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHH-cCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHH--CCCcEEE
Confidence 35778888886 454 4455554 6788999999873 1123344555542 2223466
Q ss_pred EEEccCCcC-cccccCCccEEEE
Q 044572 355 WHNADNSIE-PLSWLVGSDVLVV 376 (457)
Q Consensus 355 ~~~~d~~~~-~~~~~~~~D~vi~ 376 (457)
.+..++... ...+...+|+||.
T Consensus 100 ~~~~~~~~~~~~~~~~~~DlVid 122 (339)
T PRK07688 100 AIVQDVTAEELEELVTGVDLIID 122 (339)
T ss_pred EEeccCCHHHHHHHHcCCCEEEE
Confidence 666555431 1223457898775
No 401
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=35.83 E-value=65 Score=35.96 Aligned_cols=7 Identities=43% Similarity=0.187 Sum_probs=3.2
Q ss_pred ccCCCCC
Q 044572 50 CALQCPH 56 (457)
Q Consensus 50 v~p~C~~ 56 (457)
..|.|++
T Consensus 326 ~~p~pp~ 332 (830)
T KOG1923|consen 326 GAPQPPG 332 (830)
T ss_pred CCCCCCC
Confidence 3444543
No 402
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=35.77 E-value=92 Score=29.47 Aligned_cols=75 Identities=19% Similarity=0.131 Sum_probs=41.7
Q ss_pred CCeEEEEccc-ccH-HHHHHHhhCCCCEEEEEeCCH-------------------HHHHHHHHHHhhCCCCCCCcEEEEE
Q 044572 299 GASVTDLYAG-AGV-IGLSLAAARKCRSVKCVEINK-------------------ESQLSFEKTVSRLPKSVDGNISWHN 357 (457)
Q Consensus 299 ~~~vLDl~cG-~G~-~sl~lA~~~~~~~V~gVE~~~-------------------~av~~A~~Na~~~~~~~~~nv~~~~ 357 (457)
..+|+=+||| .|. ++..|++ .|.++++.+|-+. .=++.++++++.. |..-+++.+.
T Consensus 21 ~~~VlivG~GglGs~va~~La~-~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~--np~~~i~~~~ 97 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAA-AGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAI--NPDVEIEAYN 97 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHh--CCCCEEEEec
Confidence 5678878885 555 4444554 6788999996443 2234455555553 2223455555
Q ss_pred ccCCc-CcccccCCccEEEE
Q 044572 358 ADNSI-EPLSWLVGSDVLVV 376 (457)
Q Consensus 358 ~d~~~-~~~~~~~~~D~vi~ 376 (457)
.++.. ........+|+||.
T Consensus 98 ~~i~~~~~~~~~~~~DvVi~ 117 (228)
T cd00757 98 ERLDAENAEELIAGYDLVLD 117 (228)
T ss_pred ceeCHHHHHHHHhCCCEEEE
Confidence 44421 11122356898874
No 403
>PRK06194 hypothetical protein; Provisional
Probab=35.75 E-value=1.8e+02 Score=27.94 Aligned_cols=75 Identities=11% Similarity=0.075 Sum_probs=47.9
Q ss_pred CCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc--ccc------
Q 044572 299 GASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LSW------ 367 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~--~~~------ 367 (457)
++++| +-.|+|.+|..+++. .| .+|+.+|.+.+.++.....+... ..++.++.+|+.+.. ...
T Consensus 6 ~k~vl-VtGasggIG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~d~~~~~~~~~~~~~ 79 (287)
T PRK06194 6 GKVAV-ITGAASGFGLAFARIGAALG-MKLVLADVQQDALDRAVAELRAQ----GAEVLGVRTDVSDAAQVEALADAALE 79 (287)
T ss_pred CCEEE-EeCCccHHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHHHhc----CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 46677 666778888877753 23 47999999987766554444321 136788999987531 111
Q ss_pred -cCCccEEEECCC
Q 044572 368 -LVGSDVLVVDPP 379 (457)
Q Consensus 368 -~~~~D~vi~DPP 379 (457)
.+..|+||.+.-
T Consensus 80 ~~g~id~vi~~Ag 92 (287)
T PRK06194 80 RFGAVHLLFNNAG 92 (287)
T ss_pred HcCCCCEEEECCC
Confidence 135798887654
No 404
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=35.46 E-value=46 Score=31.24 Aligned_cols=40 Identities=23% Similarity=0.406 Sum_probs=29.1
Q ss_pred EEECCCCCCCCCHHH-HHHHHHHHHhhCCCCCeEEEEcccc
Q 044572 270 ISLAPSSFGQANTRA-FDILLRKLQKYVPYGASVTDLYAGA 309 (457)
Q Consensus 270 ~~i~~~~FfQ~n~~~-~~~l~~~i~~~~~~~~~vLDl~cG~ 309 (457)
+.+.|++|+-.-... .+..++.+.+++..|..++|+|+|+
T Consensus 2 lNvt~dSf~~g~~~~~~~~a~~~a~~~~~~GAdiIDIg~~s 42 (210)
T PF00809_consen 2 LNVTPDSFSDGGRKFSEDEAVKRAREQVEAGADIIDIGAES 42 (210)
T ss_dssp EEESCCTTTTTTCHHHHHHHHHHHHHHHHTT-SEEEEESST
T ss_pred EEecCCCCcccCcccCHHHHHHHHHHHHHhcCCEEEecccc
Confidence 457899999864433 3445666777777899999999998
No 405
>PLN02827 Alcohol dehydrogenase-like
Probab=34.88 E-value=76 Score=32.41 Aligned_cols=96 Identities=19% Similarity=0.039 Sum_probs=52.2
Q ss_pred CCCCeEEEEcc-cccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEc-----cCCcCcccc-cC
Q 044572 297 PYGASVTDLYA-GAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNA-----DNSIEPLSW-LV 369 (457)
Q Consensus 297 ~~~~~vLDl~c-G~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~-----d~~~~~~~~-~~ 369 (457)
.+|++||=.++ +.|.+++.+|+..|+..|+++|.+++-.+.|++ ++ .+ .++.. +..+.+... ..
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lG---a~--~~i~~~~~~~~~~~~v~~~~~~ 262 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FG---VT--DFINPNDLSEPIQQVIKRMTGG 262 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cC---Cc--EEEcccccchHHHHHHHHHhCC
Confidence 46888886654 233344555666677789999999887776643 21 11 12211 111111111 12
Q ss_pred CccEEEECCCCCCccHHHHHHHHhcCCC-CcEEEEe
Q 044572 370 GSDVLVVDPPRKGLDSSLVHALQSIGSA-ERKAKSL 404 (457)
Q Consensus 370 ~~D~vi~DPPR~Gl~~~v~~~l~~~~~~-~~ivyvs 404 (457)
.+|+|| | -.|-...+...+..+++. ++++.+.
T Consensus 263 g~d~vi-d--~~G~~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 263 GADYSF-E--CVGDTGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CCCEEE-E--CCCChHHHHHHHHhhccCCCEEEEEC
Confidence 588776 3 345333455566666655 6776664
No 406
>PRK05854 short chain dehydrogenase; Provisional
Probab=34.73 E-value=2.6e+02 Score=27.61 Aligned_cols=77 Identities=16% Similarity=0.049 Sum_probs=47.2
Q ss_pred CCCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc------c--
Q 044572 298 YGASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL------S-- 366 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~------~-- 366 (457)
.++++|=. .|+|.+|..+|+. .| .+|+.+..+.+..+.+...+... ....++.++..|+.+... .
T Consensus 13 ~gk~~lIT-Gas~GIG~~~a~~La~~G-~~Vil~~R~~~~~~~~~~~l~~~--~~~~~v~~~~~Dl~d~~sv~~~~~~~~ 88 (313)
T PRK05854 13 SGKRAVVT-GASDGLGLGLARRLAAAG-AEVILPVRNRAKGEAAVAAIRTA--VPDAKLSLRALDLSSLASVAALGEQLR 88 (313)
T ss_pred CCCEEEEe-CCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHh--CCCCceEEEEecCCCHHHHHHHHHHHH
Confidence 35666644 4456666666642 33 48999999988776666555431 122468899999876311 1
Q ss_pred -ccCCccEEEECC
Q 044572 367 -WLVGSDVLVVDP 378 (457)
Q Consensus 367 -~~~~~D~vi~DP 378 (457)
.....|++|.+.
T Consensus 89 ~~~~~iD~li~nA 101 (313)
T PRK05854 89 AEGRPIHLLINNA 101 (313)
T ss_pred HhCCCccEEEECC
Confidence 124578887654
No 407
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=34.66 E-value=66 Score=31.56 Aligned_cols=94 Identities=21% Similarity=0.294 Sum_probs=54.5
Q ss_pred cccccHHHHHHHhh---CC-CCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC--cccccCCccEEEEC--
Q 044572 306 YAGAGVIGLSLAAA---RK-CRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE--PLSWLVGSDVLVVD-- 377 (457)
Q Consensus 306 ~cG~G~~sl~lA~~---~~-~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~--~~~~~~~~D~vi~D-- 377 (457)
-.|+|.+|.++.+. .+ ...|..+|..+..... ..... ....+++.+|+.+. +.+.....|+||.=
T Consensus 3 TGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~--~~~~~-----~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa 75 (280)
T PF01073_consen 3 TGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFL--KDLQK-----SGVKEYIQGDITDPESLEEALEGVDVVFHTAA 75 (280)
T ss_pred EcCCcHHHHHHHHHHHHCCCceEEEEcccccccccc--hhhhc-----ccceeEEEeccccHHHHHHHhcCCceEEEeCc
Confidence 35899999888763 22 2478888977654221 11111 12334999999763 22233567877542
Q ss_pred C-CCCC-------------ccHHHHHHHHhcCCCCcEEEEeccC
Q 044572 378 P-PRKG-------------LDSSLVHALQSIGSAERKAKSLSES 407 (457)
Q Consensus 378 P-PR~G-------------l~~~v~~~l~~~~~~~~ivyvs~~~ 407 (457)
| +..+ -...++++..+.. .+++||+||.+
T Consensus 76 ~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~-VkrlVytSS~~ 118 (280)
T PF01073_consen 76 PVPPWGDYPPEEYYKVNVDGTRNVLEAARKAG-VKRLVYTSSIS 118 (280)
T ss_pred cccccCcccHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEEcCcc
Confidence 1 1111 1124677776664 89999998543
No 408
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=34.16 E-value=80 Score=31.34 Aligned_cols=90 Identities=14% Similarity=0.185 Sum_probs=47.6
Q ss_pred cccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhC-----CCCCC---------CcEEEEEccCCcCcccccCC
Q 044572 308 GAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRL-----PKSVD---------GNISWHNADNSIEPLSWLVG 370 (457)
Q Consensus 308 G~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~-----~~~~~---------~nv~~~~~d~~~~~~~~~~~ 370 (457)
|.|.+|..+|.. .| -+|+++|.+++.++.++..++.+ ..+.. .++++. .|.. .....
T Consensus 9 G~G~mG~~iA~~la~~G-~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~-~~~~----~a~~~ 82 (308)
T PRK06129 9 GAGLIGRAWAIVFARAG-HEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVT-DSLA----DAVAD 82 (308)
T ss_pred CccHHHHHHHHHHHHCC-CeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEE-CcHH----HhhCC
Confidence 566665555432 22 38999999999888766543210 00110 122221 1211 12246
Q ss_pred ccEEEECCCCC-CccHHHHHHHHhcCCCCcEEEEe
Q 044572 371 SDVLVVDPPRK-GLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 371 ~D~vi~DPPR~-Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
.|+|+...|-. .....+++.+..+. ++..++.|
T Consensus 83 ad~Vi~avpe~~~~k~~~~~~l~~~~-~~~~ii~s 116 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAELDALA-PPHAILAS 116 (308)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhC-CCcceEEE
Confidence 89999988753 23445666666665 34444455
No 409
>PRK12939 short chain dehydrogenase; Provisional
Probab=34.08 E-value=2.1e+02 Score=26.51 Aligned_cols=74 Identities=19% Similarity=0.142 Sum_probs=48.6
Q ss_pred CCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc--cc------
Q 044572 299 GASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL--SW------ 367 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~--~~------ 367 (457)
++++| +-.|+|.+|..+++. .| .+|++++.+++.++.....++.. ..++.++.+|+.+... ..
T Consensus 7 ~~~vl-ItGa~g~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~ 80 (250)
T PRK12939 7 GKRAL-VTGAARGLGAAFAEALAEAG-ATVAFNDGLAAEARELAAALEAA----GGRAHAIAADLADPASVQRFFDAAAA 80 (250)
T ss_pred CCEEE-EeCCCChHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 56676 666788999888753 23 37999999988776655544431 2468899999875321 10
Q ss_pred -cCCccEEEECC
Q 044572 368 -LVGSDVLVVDP 378 (457)
Q Consensus 368 -~~~~D~vi~DP 378 (457)
....|+||..-
T Consensus 81 ~~~~id~vi~~a 92 (250)
T PRK12939 81 ALGGLDGLVNNA 92 (250)
T ss_pred HcCCCCEEEECC
Confidence 14678887653
No 410
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=33.75 E-value=89 Score=31.29 Aligned_cols=43 Identities=23% Similarity=0.203 Sum_probs=31.2
Q ss_pred CCCCeEEEEcccc-cHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH
Q 044572 297 PYGASVTDLYAGA-GVIGLSLAAARKCRSVKCVEINKESQLSFEK 340 (457)
Q Consensus 297 ~~~~~vLDl~cG~-G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~ 340 (457)
.++++||=.++|. |.+++.+|+..|+ +|++++.+++-++.+++
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence 4688888777633 5555666766665 79999999998877753
No 411
>PRK05867 short chain dehydrogenase; Provisional
Probab=33.74 E-value=2.6e+02 Score=26.20 Aligned_cols=76 Identities=18% Similarity=0.094 Sum_probs=48.1
Q ss_pred CCCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc------c--
Q 044572 298 YGASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL------S-- 366 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~------~-- 366 (457)
.++++|=.|+ +|.+|..+++. .| .+|+.++.+++.++.....++.. ..++.++..|+.+... +
T Consensus 8 ~~k~vlVtGa-s~gIG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (253)
T PRK05867 8 HGKRALITGA-STGIGKRVALAYVEAG-AQVAIAARHLDALEKLADEIGTS----GGKVVPVCCDVSQHQQVTSMLDQVT 81 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCC-CEEEEEcCCHHHHHHHHHHHHhc----CCeEEEEEccCCCHHHHHHHHHHHH
Confidence 3667775554 55566665542 23 47999999988877766655442 1357788899875311 1
Q ss_pred -ccCCccEEEECCC
Q 044572 367 -WLVGSDVLVVDPP 379 (457)
Q Consensus 367 -~~~~~D~vi~DPP 379 (457)
..+..|++|.+.-
T Consensus 82 ~~~g~id~lv~~ag 95 (253)
T PRK05867 82 AELGGIDIAVCNAG 95 (253)
T ss_pred HHhCCCCEEEECCC
Confidence 1246899988754
No 412
>PRK07326 short chain dehydrogenase; Provisional
Probab=33.41 E-value=2e+02 Score=26.56 Aligned_cols=73 Identities=22% Similarity=0.203 Sum_probs=46.6
Q ss_pred CCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc------cc--
Q 044572 299 GASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL------SW-- 367 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~------~~-- 367 (457)
+.++|=.| |+|.+|..+++. .| .+|++++.+++....+...+.. . ..+.++.+|+.+... ..
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~~g-~~V~~~~r~~~~~~~~~~~l~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLAEG-YKVAITARDQKELEEAAAELNN---K--GNVLGLAADVRDEADVQRAVDAIVA 78 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHCC-CEEEEeeCCHHHHHHHHHHHhc---c--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 56677555 688888877753 23 3799999998776665554432 1 457888999875311 11
Q ss_pred -cCCccEEEECC
Q 044572 368 -LVGSDVLVVDP 378 (457)
Q Consensus 368 -~~~~D~vi~DP 378 (457)
....|+||...
T Consensus 79 ~~~~~d~vi~~a 90 (237)
T PRK07326 79 AFGGLDVLIANA 90 (237)
T ss_pred HcCCCCEEEECC
Confidence 13678888654
No 413
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=33.34 E-value=85 Score=30.77 Aligned_cols=96 Identities=16% Similarity=0.162 Sum_probs=49.5
Q ss_pred eEEEEcccccH--HHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCC-----CCC----------CCcEEEEEccCCcC
Q 044572 301 SVTDLYAGAGV--IGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLP-----KSV----------DGNISWHNADNSIE 363 (457)
Q Consensus 301 ~vLDl~cG~G~--~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~-----~~~----------~~nv~~~~~d~~~~ 363 (457)
+|.=+|+|+=. ++..++.. ..+|+.+|.+++.++.++.+++.+. ... ..++++. .|..
T Consensus 5 kIaViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~-- 79 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFH--GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLA-- 79 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHH--
Confidence 34445555322 33333332 2489999999999988876643210 000 0122221 2221
Q ss_pred cccccCCccEEEECCCCC-CccHHHHHHHHhcCCCCcEEEE
Q 044572 364 PLSWLVGSDVLVVDPPRK-GLDSSLVHALQSIGSAERKAKS 403 (457)
Q Consensus 364 ~~~~~~~~D~vi~DPPR~-Gl~~~v~~~l~~~~~~~~ivyv 403 (457)
......|+||.-=|-. ....++++.+....+++.++..
T Consensus 80 --~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 118 (287)
T PRK08293 80 --EAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFAT 118 (287)
T ss_pred --HHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 1234678888876632 2344566667665545555533
No 414
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=33.03 E-value=2.2e+02 Score=29.27 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=24.9
Q ss_pred CCeEEEEccc-ccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH
Q 044572 299 GASVTDLYAG-AGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340 (457)
Q Consensus 299 ~~~vLDl~cG-~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~ 340 (457)
+.+|+=+|+| +|..++..+...|+ +|+.+|.+++.++.+..
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~ 208 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDA 208 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHH
Confidence 3457666554 33334444444555 79999999887665543
No 415
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=32.97 E-value=28 Score=28.52 Aligned_cols=16 Identities=13% Similarity=0.027 Sum_probs=11.1
Q ss_pred CCCccCCCCCCCcCcc
Q 044572 47 SLTCALQCPHFQSCSG 62 (457)
Q Consensus 47 ~~Rv~p~C~~f~~CGG 62 (457)
+-|.-+-|.||.--||
T Consensus 80 ppr~PSviSYF~Ltgg 95 (97)
T PF04834_consen 80 PPRPPSVISYFHLTGG 95 (97)
T ss_pred CCCCCCeeeEEeeccC
Confidence 3455566888887777
No 416
>PRK08339 short chain dehydrogenase; Provisional
Probab=32.81 E-value=2.4e+02 Score=26.91 Aligned_cols=76 Identities=14% Similarity=0.107 Sum_probs=46.8
Q ss_pred CCCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc--cc-----
Q 044572 298 YGASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL--SW----- 367 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~--~~----- 367 (457)
.++++|=.| |+|.+|..+|+. .| .+|+.++.+++.++.+.+.++.. ...++.++.+|+.+... .+
T Consensus 7 ~~k~~lItG-as~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~i~~~~~~~~ 81 (263)
T PRK08339 7 SGKLAFTTA-SSKGIGFGVARVLARAG-ADVILLSRNEENLKKAREKIKSE---SNVDVSYIVADLTKREDLERTVKELK 81 (263)
T ss_pred CCCEEEEeC-CCCcHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhh---cCCceEEEEecCCCHHHHHHHHHHHH
Confidence 356666444 445556555543 34 37999999988877766655431 12467889999876311 11
Q ss_pred -cCCccEEEECC
Q 044572 368 -LVGSDVLVVDP 378 (457)
Q Consensus 368 -~~~~D~vi~DP 378 (457)
.+..|++|.+.
T Consensus 82 ~~g~iD~lv~na 93 (263)
T PRK08339 82 NIGEPDIFFFST 93 (263)
T ss_pred hhCCCcEEEECC
Confidence 14578888765
No 417
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=32.71 E-value=28 Score=36.00 Aligned_cols=20 Identities=15% Similarity=0.175 Sum_probs=16.5
Q ss_pred CCeEEEEcccccHHHHHHHh
Q 044572 299 GASVTDLYAGAGVIGLSLAA 318 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~ 318 (457)
.-+|+|+|||+|..++.+..
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs 83 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIID 83 (386)
T ss_pred ceeEEEecCCCCccHHHHHH
Confidence 34799999999999887753
No 418
>PRK12828 short chain dehydrogenase; Provisional
Probab=32.71 E-value=3.9e+02 Score=24.37 Aligned_cols=73 Identities=19% Similarity=0.044 Sum_probs=42.1
Q ss_pred CCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc------c---
Q 044572 299 GASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL------S--- 366 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~------~--- 366 (457)
++++|= -.|+|.+|..+++. .| .+|++++.+++-.......... ..++++.+|+.+... .
T Consensus 7 ~k~vlI-tGatg~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (239)
T PRK12828 7 GKVVAI-TGGFGGLGRATAAWLAARG-ARVALIGRGAAPLSQTLPGVPA------DALRIGGIDLVDPQAARRAVDEVNR 78 (239)
T ss_pred CCEEEE-ECCCCcHhHHHHHHHHHCC-CeEEEEeCChHhHHHHHHHHhh------cCceEEEeecCCHHHHHHHHHHHHH
Confidence 566664 44667777777653 23 3799999987654433322221 235677788765311 1
Q ss_pred ccCCccEEEECCC
Q 044572 367 WLVGSDVLVVDPP 379 (457)
Q Consensus 367 ~~~~~D~vi~DPP 379 (457)
...+.|+||....
T Consensus 79 ~~~~~d~vi~~ag 91 (239)
T PRK12828 79 QFGRLDALVNIAG 91 (239)
T ss_pred HhCCcCEEEECCc
Confidence 0135788877654
No 419
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=32.40 E-value=1.8e+02 Score=28.61 Aligned_cols=78 Identities=10% Similarity=0.046 Sum_probs=44.2
Q ss_pred CCCeEEEEcccccHHHHHHHhhC--CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc--ccccCCccE
Q 044572 298 YGASVTDLYAGAGVIGLSLAAAR--KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LSWLVGSDV 373 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~--~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~--~~~~~~~D~ 373 (457)
.+++||=. .|+|.+|..+++.. ...+|+++..++............. ....+++++.+|+.+.. .......|+
T Consensus 4 ~~k~vlVt-G~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~d~~~~~~~~~~~d~ 80 (325)
T PLN02989 4 GGKVVCVT-GASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALD--GAKERLKLFKADLLDEGSFELAIDGCET 80 (325)
T ss_pred CCCEEEEE-CCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhcc--CCCCceEEEeCCCCCchHHHHHHcCCCE
Confidence 45677744 47898888887631 1237877776655433322111110 11246889999987642 222345787
Q ss_pred EEECC
Q 044572 374 LVVDP 378 (457)
Q Consensus 374 vi~DP 378 (457)
||..-
T Consensus 81 vih~A 85 (325)
T PLN02989 81 VFHTA 85 (325)
T ss_pred EEEeC
Confidence 76643
No 420
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=32.27 E-value=97 Score=27.39 Aligned_cols=93 Identities=16% Similarity=0.115 Sum_probs=50.1
Q ss_pred EcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCC----CCCCCcEEEEEccCCcCcccccCCccEEEECCCC
Q 044572 305 LYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLP----KSVDGNISWHNADNSIEPLSWLVGSDVLVVDPPR 380 (457)
Q Consensus 305 l~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~----~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR 380 (457)
+|+|.+..++......+..+|+-...+++.++..+++-.... .....++.+ ..|.. +.....|+||+==|-
T Consensus 5 iGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~----~a~~~ad~IiiavPs 79 (157)
T PF01210_consen 5 IGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLE----EALEDADIIIIAVPS 79 (157)
T ss_dssp ESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHH----HHHTT-SEEEE-S-G
T ss_pred ECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHH----HHhCcccEEEecccH
Confidence 455555544333222234689999999998888877643110 001123432 22322 223567999998887
Q ss_pred CCccHHHHHHHHhcCCCCcEEEE
Q 044572 381 KGLDSSLVHALQSIGSAERKAKS 403 (457)
Q Consensus 381 ~Gl~~~v~~~l~~~~~~~~ivyv 403 (457)
.+. +++++.+..+...+.++.+
T Consensus 80 ~~~-~~~~~~l~~~l~~~~~ii~ 101 (157)
T PF01210_consen 80 QAH-REVLEQLAPYLKKGQIIIS 101 (157)
T ss_dssp GGH-HHHHHHHTTTSHTT-EEEE
T ss_pred HHH-HHHHHHHhhccCCCCEEEE
Confidence 776 4688888876534444443
No 421
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=32.19 E-value=1.2e+02 Score=31.09 Aligned_cols=33 Identities=30% Similarity=0.272 Sum_probs=23.4
Q ss_pred CCCeEEEEccc-ccH-HHHHHHhhCCCCEEEEEeCC
Q 044572 298 YGASVTDLYAG-AGV-IGLSLAAARKCRSVKCVEIN 331 (457)
Q Consensus 298 ~~~~vLDl~cG-~G~-~sl~lA~~~~~~~V~gVE~~ 331 (457)
.+.+|+=+||| .|. ++..|+ +.|.++++.||-+
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La-~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLA-AAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCC
Confidence 35678878885 565 444444 4678899999998
No 422
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=32.11 E-value=37 Score=39.55 Aligned_cols=9 Identities=22% Similarity=0.678 Sum_probs=4.0
Q ss_pred hcCCCCccc
Q 044572 153 ELNVEPYDE 161 (457)
Q Consensus 153 ~~~~~~y~~ 161 (457)
+..++|||.
T Consensus 186 r~rfppfdd 194 (2365)
T COG5178 186 RKRFPPFDD 194 (2365)
T ss_pred hccCCCCcc
Confidence 334445443
No 423
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=32.11 E-value=2.3e+02 Score=26.26 Aligned_cols=76 Identities=20% Similarity=0.161 Sum_probs=48.5
Q ss_pred CCeEEEEcccccHHHHHHHhhC--CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc--cc----c---
Q 044572 299 GASVTDLYAGAGVIGLSLAAAR--KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LS----W--- 367 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~~--~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~--~~----~--- 367 (457)
+.++|= ..|+|.+|..+++.. ...+|+.++.+.+....+...++.. ..++.++.+|+.+.. .. +
T Consensus 3 ~~~ilI-tGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~ 77 (250)
T TIGR03206 3 DKTAIV-TGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAK----GGNAQAFACDITDRDSVDTAVAAAEQA 77 (250)
T ss_pred CCEEEE-eCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc----CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 456664 446778887777531 1248999999988777666555432 246888999987531 11 1
Q ss_pred cCCccEEEECCC
Q 044572 368 LVGSDVLVVDPP 379 (457)
Q Consensus 368 ~~~~D~vi~DPP 379 (457)
....|++|....
T Consensus 78 ~~~~d~vi~~ag 89 (250)
T TIGR03206 78 LGPVDVLVNNAG 89 (250)
T ss_pred cCCCCEEEECCC
Confidence 135798888775
No 424
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=32.04 E-value=90 Score=30.59 Aligned_cols=43 Identities=23% Similarity=0.249 Sum_probs=32.3
Q ss_pred CCCCeEEEEccc-ccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH
Q 044572 297 PYGASVTDLYAG-AGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340 (457)
Q Consensus 297 ~~~~~vLDl~cG-~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~ 340 (457)
..+++||..++| +|..++.+|+..|+ +|++++.+++..+.+++
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH
Confidence 467888887665 47777778876664 59999999988777643
No 425
>PRK08328 hypothetical protein; Provisional
Probab=31.93 E-value=1.7e+02 Score=27.77 Aligned_cols=32 Identities=22% Similarity=0.234 Sum_probs=22.9
Q ss_pred CCeEEEEccc-ccH-HHHHHHhhCCCCEEEEEeCC
Q 044572 299 GASVTDLYAG-AGV-IGLSLAAARKCRSVKCVEIN 331 (457)
Q Consensus 299 ~~~vLDl~cG-~G~-~sl~lA~~~~~~~V~gVE~~ 331 (457)
+.+|+=+||| .|. ++..||+ .|.++++.+|-+
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~-~Gvg~i~lvD~D 60 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAA-AGVGRILLIDEQ 60 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCC
Confidence 5678888886 565 4445554 678899999854
No 426
>PRK07814 short chain dehydrogenase; Provisional
Probab=31.92 E-value=2.5e+02 Score=26.63 Aligned_cols=75 Identities=11% Similarity=-0.008 Sum_probs=47.7
Q ss_pred CCCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc--cc-----
Q 044572 298 YGASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL--SW----- 367 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~--~~----- 367 (457)
+++++|=.| |+|.+|..+++. .|+ +|++++.+++.++...+.++.. ..++.++..|+.+... +.
T Consensus 9 ~~~~vlItG-asggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~~~ 82 (263)
T PRK07814 9 DDQVAVVTG-AGRGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAA----GRRAHVVAADLAHPEATAGLAGQAV 82 (263)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHH
Confidence 356676444 677777776642 343 8999999988776665555431 2357888899875321 00
Q ss_pred --cCCccEEEECC
Q 044572 368 --LVGSDVLVVDP 378 (457)
Q Consensus 368 --~~~~D~vi~DP 378 (457)
.++.|+||...
T Consensus 83 ~~~~~id~vi~~A 95 (263)
T PRK07814 83 EAFGRLDIVVNNV 95 (263)
T ss_pred HHcCCCCEEEECC
Confidence 13678888654
No 427
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=31.39 E-value=26 Score=20.89 Aligned_cols=16 Identities=25% Similarity=0.667 Sum_probs=10.5
Q ss_pred CCCCCC--C-cC--ccCccCc
Q 044572 52 LQCPHF--Q-SC--SGCTHEF 67 (457)
Q Consensus 52 p~C~~f--~-~C--GGC~lqh 67 (457)
|.|+|. | .| ..|.|||
T Consensus 1 ~lC~yEl~Gg~Cnd~~C~~QH 21 (23)
T PF10650_consen 1 PLCPYELTGGVCNDPDCEFQH 21 (23)
T ss_pred CCCccccCCCeeCCCCCCccc
Confidence 457653 2 55 5789998
No 428
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=31.30 E-value=1.1e+02 Score=30.19 Aligned_cols=44 Identities=20% Similarity=0.173 Sum_probs=31.6
Q ss_pred CCCCeEEEEccc-ccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH
Q 044572 297 PYGASVTDLYAG-AGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340 (457)
Q Consensus 297 ~~~~~vLDl~cG-~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~ 340 (457)
.++++||-.++| +|.+.+.+|+..+...|++++.+++..+.+++
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~ 210 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE 210 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 467888887654 46667777776665589999988877766654
No 429
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=31.18 E-value=97 Score=30.59 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=31.3
Q ss_pred CCCeEEEEcccc-cHHHHHHHhhCCCCEEEEEeCCHHHHHHHH
Q 044572 298 YGASVTDLYAGA-GVIGLSLAAARKCRSVKCVEINKESQLSFE 339 (457)
Q Consensus 298 ~~~~vLDl~cG~-G~~sl~lA~~~~~~~V~gVE~~~~av~~A~ 339 (457)
++++||-.++|. |.+++.+|+..|..+|++++.+++..+.++
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~ 207 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVAR 207 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH
Confidence 678888777654 667777777666668999999988877554
No 430
>PRK10904 DNA adenine methylase; Provisional
Probab=31.16 E-value=66 Score=31.49 Aligned_cols=29 Identities=17% Similarity=0.084 Sum_probs=22.2
Q ss_pred CcEEEEEccCCcCcccccCCccEEEECCCC
Q 044572 351 GNISWHNADNSIEPLSWLVGSDVLVVDPPR 380 (457)
Q Consensus 351 ~nv~~~~~d~~~~~~~~~~~~D~vi~DPPR 380 (457)
.++++.++|..+.+... ..-|.|.+|||+
T Consensus 156 ~~v~i~~~Df~~~i~~~-~~~~fvYlDPPY 184 (271)
T PRK10904 156 QNAFFYCESYADSMARA-DKGSVVYCDPPY 184 (271)
T ss_pred cCCEEEECCHHHHHhhc-CCCcEEEECCCC
Confidence 35788999988776542 455799999998
No 431
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=31.15 E-value=99 Score=33.36 Aligned_cols=97 Identities=14% Similarity=0.119 Sum_probs=61.1
Q ss_pred CeEEEEcccccHHHHHH---HhhC-CCCEEEEEeCCHHHHHHHHH-HHhhCCCCCCCcEEEEEccCCcCcccccCCccEE
Q 044572 300 ASVTDLYAGAGVIGLSL---AAAR-KCRSVKCVEINKESQLSFEK-TVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVL 374 (457)
Q Consensus 300 ~~vLDl~cG~G~~sl~l---A~~~-~~~~V~gVE~~~~av~~A~~-Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~v 374 (457)
..|+=+|+|-|-+.-.. |... .--++++||.||.|+...+. |.+. -.++|+.+.+|..++-.. ..+.|++
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~----W~~~Vtii~~DMR~w~ap-~eq~DI~ 443 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFEC----WDNRVTIISSDMRKWNAP-REQADII 443 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhh----hcCeeEEEeccccccCCc-hhhccch
Confidence 35778999999765433 3221 12379999999999876653 2222 235799999998776432 1456776
Q ss_pred EECCC----CCCccHHHHHHHHhcCCCCcEE
Q 044572 375 VVDPP----RKGLDSSLVHALQSIGSAERKA 401 (457)
Q Consensus 375 i~DPP----R~Gl~~~v~~~l~~~~~~~~iv 401 (457)
|..-= -.-|+++.++.+.+.-++.+|-
T Consensus 444 VSELLGSFGDNELSPECLDG~q~fLkpdgIs 474 (649)
T KOG0822|consen 444 VSELLGSFGDNELSPECLDGAQKFLKPDGIS 474 (649)
T ss_pred HHHhhccccCccCCHHHHHHHHhhcCCCceE
Confidence 53221 1236777888777766566443
No 432
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=31.09 E-value=51 Score=31.42 Aligned_cols=56 Identities=14% Similarity=0.112 Sum_probs=45.3
Q ss_pred HHHHHHHhhCC--CCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHH
Q 044572 287 ILLRKLQKYVP--YGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTV 342 (457)
Q Consensus 287 ~l~~~i~~~~~--~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na 342 (457)
.|+..+++++. +|...+|+-=|+|.-+-.+.+...-.++++.|.+|-|-+.|+.-.
T Consensus 30 Vm~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s 87 (303)
T KOG2782|consen 30 VMLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHS 87 (303)
T ss_pred eehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhh
Confidence 45667777765 689999999999998888887644467999999999999887654
No 433
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=30.96 E-value=3.1e+02 Score=23.55 Aligned_cols=72 Identities=19% Similarity=0.177 Sum_probs=46.6
Q ss_pred EcccccHHHHHHHhh---CCCCEEEEEeCC--HHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc------c---ccCC
Q 044572 305 LYAGAGVIGLSLAAA---RKCRSVKCVEIN--KESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL------S---WLVG 370 (457)
Q Consensus 305 l~cG~G~~sl~lA~~---~~~~~V~gVE~~--~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~------~---~~~~ 370 (457)
+..|+|.+|..+++. .++..|+.+..+ .+..+.....++.. ..++.++..|+.+.-. . ....
T Consensus 5 ItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 5 ITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAP----GAKITFIECDLSDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp EETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHT----TSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred EECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccc----cccccccccccccccccccccccccccccc
Confidence 455667777766653 356789999998 56565555555541 2689999999875311 1 1246
Q ss_pred ccEEEECCCC
Q 044572 371 SDVLVVDPPR 380 (457)
Q Consensus 371 ~D~vi~DPPR 380 (457)
.|++|.+...
T Consensus 81 ld~li~~ag~ 90 (167)
T PF00106_consen 81 LDILINNAGI 90 (167)
T ss_dssp ESEEEEECSC
T ss_pred cccccccccc
Confidence 8999887653
No 434
>PLN02427 UDP-apiose/xylose synthase
Probab=30.90 E-value=1.2e+02 Score=30.84 Aligned_cols=74 Identities=12% Similarity=0.184 Sum_probs=44.1
Q ss_pred CCeEEEEcccccHHHHHHHhhC---CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc--ccccCCccE
Q 044572 299 GASVTDLYAGAGVIGLSLAAAR---KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LSWLVGSDV 373 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~~---~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~--~~~~~~~D~ 373 (457)
.++|| +-.|+|.+|-++++.. +.-+|+++|.+...+.... .........+++++.+|+.+.. ......+|+
T Consensus 14 ~~~Vl-VTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~---~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ 89 (386)
T PLN02427 14 PLTIC-MIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLL---EPDTVPWSGRIQFHRINIKHDSRLEGLIKMADL 89 (386)
T ss_pred CcEEE-EECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhh---ccccccCCCCeEEEEcCCCChHHHHHHhhcCCE
Confidence 45677 7889999999888632 2247999998765432211 1100001136899999987632 122345787
Q ss_pred EEE
Q 044572 374 LVV 376 (457)
Q Consensus 374 vi~ 376 (457)
||-
T Consensus 90 ViH 92 (386)
T PLN02427 90 TIN 92 (386)
T ss_pred EEE
Confidence 653
No 435
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=30.78 E-value=47 Score=30.53 Aligned_cols=32 Identities=41% Similarity=0.572 Sum_probs=18.1
Q ss_pred cccHHHHHHHhh--CCCCEEEEEeCCHHHHHHHH
Q 044572 308 GAGVIGLSLAAA--RKCRSVKCVEINKESQLSFE 339 (457)
Q Consensus 308 G~G~~sl~lA~~--~~~~~V~gVE~~~~av~~A~ 339 (457)
|.|..|+.+|.. ...-+|+|+|++++-++..+
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~ 40 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALN 40 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHH
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHh
Confidence 667666555532 11249999999999877654
No 436
>PRK05993 short chain dehydrogenase; Provisional
Probab=30.61 E-value=4.8e+02 Score=24.86 Aligned_cols=68 Identities=16% Similarity=-0.008 Sum_probs=42.0
Q ss_pred CCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc------ccc--
Q 044572 299 GASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP------LSW-- 367 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~------~~~-- 367 (457)
++++|=. .|+|.+|..+|+. .| .+|++++.+++.++..+. ..++++.+|+.+.. ...
T Consensus 4 ~k~vlIt-GasggiG~~la~~l~~~G-~~Vi~~~r~~~~~~~l~~----------~~~~~~~~Dl~d~~~~~~~~~~~~~ 71 (277)
T PRK05993 4 KRSILIT-GCSSGIGAYCARALQSDG-WRVFATCRKEEDVAALEA----------EGLEAFQLDYAEPESIAALVAQVLE 71 (277)
T ss_pred CCEEEEe-CCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH----------CCceEEEccCCCHHHHHHHHHHHHH
Confidence 4566644 4567787777653 23 489999999877654321 13577888887631 111
Q ss_pred --cCCccEEEECC
Q 044572 368 --LVGSDVLVVDP 378 (457)
Q Consensus 368 --~~~~D~vi~DP 378 (457)
.+..|++|.+.
T Consensus 72 ~~~g~id~li~~A 84 (277)
T PRK05993 72 LSGGRLDALFNNG 84 (277)
T ss_pred HcCCCccEEEECC
Confidence 13579888764
No 437
>PRK09291 short chain dehydrogenase; Provisional
Probab=30.20 E-value=4.5e+02 Score=24.40 Aligned_cols=73 Identities=11% Similarity=0.009 Sum_probs=44.8
Q ss_pred CeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc--c-ccCCccE
Q 044572 300 ASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL--S-WLVGSDV 373 (457)
Q Consensus 300 ~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~--~-~~~~~D~ 373 (457)
+++| +-.|+|.+|..+++. .| .+|+++..++...+..+...+.. ..++.++.+|+.+... . .....|+
T Consensus 3 ~~vl-VtGasg~iG~~ia~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~id~ 76 (257)
T PRK09291 3 KTIL-ITGAGSGFGREVALRLARKG-HNVIAGVQIAPQVTALRAEAARR----GLALRVEKLDLTDAIDRAQAAEWDVDV 76 (257)
T ss_pred CEEE-EeCCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhc----CCcceEEEeeCCCHHHHHHHhcCCCCE
Confidence 3455 445577777777643 23 48999998877665555444331 1357888899876321 1 1236899
Q ss_pred EEECC
Q 044572 374 LVVDP 378 (457)
Q Consensus 374 vi~DP 378 (457)
||.+-
T Consensus 77 vi~~a 81 (257)
T PRK09291 77 LLNNA 81 (257)
T ss_pred EEECC
Confidence 88863
No 438
>PRK07890 short chain dehydrogenase; Provisional
Probab=29.97 E-value=2.4e+02 Score=26.41 Aligned_cols=74 Identities=18% Similarity=0.065 Sum_probs=47.6
Q ss_pred CCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc------c---
Q 044572 299 GASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL------S--- 366 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~------~--- 366 (457)
++++| +-.|+|.+|..+|+. .| .+|+.++.+++..+.+...++.. ..++.++..|+.+... .
T Consensus 5 ~k~vl-ItGa~~~IG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (258)
T PRK07890 5 GKVVV-VSGVGPGLGRTLAVRAARAG-ADVVLAARTAERLDEVAAEIDDL----GRRALAVPTDITDEDQCANLVALALE 78 (258)
T ss_pred CCEEE-EECCCCcHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHh----CCceEEEecCCCCHHHHHHHHHHHHH
Confidence 56666 555677777776653 23 38999999988776665554431 2467889999875311 0
Q ss_pred ccCCccEEEECC
Q 044572 367 WLVGSDVLVVDP 378 (457)
Q Consensus 367 ~~~~~D~vi~DP 378 (457)
..+..|+||.+.
T Consensus 79 ~~g~~d~vi~~a 90 (258)
T PRK07890 79 RFGRVDALVNNA 90 (258)
T ss_pred HcCCccEEEECC
Confidence 014679888765
No 439
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=29.93 E-value=2.3e+02 Score=26.15 Aligned_cols=75 Identities=16% Similarity=0.117 Sum_probs=41.2
Q ss_pred CCeEEEEcccccHHHHHHHh---hCCCCEEEEEeCCHHH-------------------HHHHHHHHhhCCCCCCCcEEEE
Q 044572 299 GASVTDLYAGAGVIGLSLAA---ARKCRSVKCVEINKES-------------------QLSFEKTVSRLPKSVDGNISWH 356 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~---~~~~~~V~gVE~~~~a-------------------v~~A~~Na~~~~~~~~~nv~~~ 356 (457)
..+|+=+||| .+|.++++ ..|.++++.+|-+.-. .+.++++++.. |-.-+++.+
T Consensus 21 ~s~VlIiG~g--glG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~l--Np~v~i~~~ 96 (197)
T cd01492 21 SARILLIGLK--GLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRAL--NPRVKVSVD 96 (197)
T ss_pred hCcEEEEcCC--HHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHH--CCCCEEEEE
Confidence 5667767654 34444333 3678899999876322 23344455543 222355555
Q ss_pred EccCCcCcccccCCccEEEEC
Q 044572 357 NADNSIEPLSWLVGSDVLVVD 377 (457)
Q Consensus 357 ~~d~~~~~~~~~~~~D~vi~D 377 (457)
...+.+........||+||..
T Consensus 97 ~~~~~~~~~~~~~~~dvVi~~ 117 (197)
T cd01492 97 TDDISEKPEEFFSQFDVVVAT 117 (197)
T ss_pred ecCccccHHHHHhCCCEEEEC
Confidence 554433222234679998863
No 440
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=29.82 E-value=1.1e+02 Score=30.85 Aligned_cols=43 Identities=16% Similarity=0.126 Sum_probs=29.5
Q ss_pred CCCCeEEEEcc-cccHHHHHHHhhCCCCEEEEEeCCHHHHHHHH
Q 044572 297 PYGASVTDLYA-GAGVIGLSLAAARKCRSVKCVEINKESQLSFE 339 (457)
Q Consensus 297 ~~~~~vLDl~c-G~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~ 339 (457)
..+++||=.++ +.|.+++.+|+..|+.+|++++.+++-++.++
T Consensus 185 ~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~ 228 (368)
T cd08300 185 EPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAK 228 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 46788776654 23344455566666668999999999877764
No 441
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=29.79 E-value=3.1e+02 Score=25.35 Aligned_cols=75 Identities=19% Similarity=0.098 Sum_probs=47.9
Q ss_pred CCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc--c-------
Q 044572 299 GASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL--S------- 366 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~--~------- 366 (457)
+.++|=.| |+|.+|..+++. .|+ +|+.++.+++..+......+.. ..++.++..|+.+... .
T Consensus 7 ~~~vlVtG-~sg~iG~~l~~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (239)
T PRK07666 7 GKNALITG-AGRGIGRAVAIALAKEGV-NVGLLARTEENLKAVAEEVEAY----GVKVVIATADVSDYEEVTAAIEQLKN 80 (239)
T ss_pred CCEEEEEc-CCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHh----CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 45666555 678888877643 343 8999999988766555444431 2468889999865321 0
Q ss_pred ccCCccEEEECCC
Q 044572 367 WLVGSDVLVVDPP 379 (457)
Q Consensus 367 ~~~~~D~vi~DPP 379 (457)
.....|+||....
T Consensus 81 ~~~~id~vi~~ag 93 (239)
T PRK07666 81 ELGSIDILINNAG 93 (239)
T ss_pred HcCCccEEEEcCc
Confidence 1135788887653
No 442
>PRK05599 hypothetical protein; Provisional
Probab=29.79 E-value=2.5e+02 Score=26.34 Aligned_cols=74 Identities=11% Similarity=-0.058 Sum_probs=44.8
Q ss_pred EEEEcccccHHHHHHHhh-CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc------c---ccCCc
Q 044572 302 VTDLYAGAGVIGLSLAAA-RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL------S---WLVGS 371 (457)
Q Consensus 302 vLDl~cG~G~~sl~lA~~-~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~------~---~~~~~ 371 (457)
+|=.|+ ++.+|..+|+. ....+|+.++.+++.++.+.+.++.. +...+.++..|+.+... . ..+..
T Consensus 3 vlItGa-s~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~---~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 78 (246)
T PRK05599 3 ILILGG-TSDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQR---GATSVHVLSFDAQDLDTHRELVKQTQELAGEI 78 (246)
T ss_pred EEEEeC-ccHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhc---cCCceEEEEcccCCHHHHHHHHHHHHHhcCCC
Confidence 443343 45566666542 11257999999988887776666542 12347788899876311 1 12467
Q ss_pred cEEEECCC
Q 044572 372 DVLVVDPP 379 (457)
Q Consensus 372 D~vi~DPP 379 (457)
|++|.+.-
T Consensus 79 d~lv~nag 86 (246)
T PRK05599 79 SLAVVAFG 86 (246)
T ss_pred CEEEEecC
Confidence 98887654
No 443
>PLN00016 RNA-binding protein; Provisional
Probab=29.74 E-value=1e+02 Score=31.40 Aligned_cols=102 Identities=17% Similarity=0.050 Sum_probs=58.1
Q ss_pred CCeEEEE---cccccHHHHHHHhhC--CCCEEEEEeCCHHHHHHHHH-----HHhhCCCCCCCcEEEEEccCCcCcccc-
Q 044572 299 GASVTDL---YAGAGVIGLSLAAAR--KCRSVKCVEINKESQLSFEK-----TVSRLPKSVDGNISWHNADNSIEPLSW- 367 (457)
Q Consensus 299 ~~~vLDl---~cG~G~~sl~lA~~~--~~~~V~gVE~~~~av~~A~~-----Na~~~~~~~~~nv~~~~~d~~~~~~~~- 367 (457)
..+||=. +.|+|.+|..+++.. ..-+|++++.++........ ..+. ....++++.+|..+....+
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l----~~~~v~~v~~D~~d~~~~~~ 127 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSEL----SSAGVKTVWGDPADVKSKVA 127 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHh----hhcCceEEEecHHHHHhhhc
Confidence 4567744 268898888877531 12489999988654221110 0111 0124788999987621111
Q ss_pred cCCccEEEECCCCC-CccHHHHHHHHhcCCCCcEEEEec
Q 044572 368 LVGSDVLVVDPPRK-GLDSSLVHALQSIGSAERKAKSLS 405 (457)
Q Consensus 368 ~~~~D~vi~DPPR~-Gl~~~v~~~l~~~~~~~~ivyvs~ 405 (457)
...+|+||...... .....+++++.+.. .+++||+|+
T Consensus 128 ~~~~d~Vi~~~~~~~~~~~~ll~aa~~~g-vkr~V~~SS 165 (378)
T PLN00016 128 GAGFDVVYDNNGKDLDEVEPVADWAKSPG-LKQFLFCSS 165 (378)
T ss_pred cCCccEEEeCCCCCHHHHHHHHHHHHHcC-CCEEEEEcc
Confidence 24689888653221 11234666666554 789999974
No 444
>PRK06949 short chain dehydrogenase; Provisional
Probab=29.60 E-value=3e+02 Score=25.72 Aligned_cols=76 Identities=13% Similarity=0.000 Sum_probs=48.4
Q ss_pred CCCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc--c------
Q 044572 298 YGASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL--S------ 366 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~--~------ 366 (457)
.++++|=.| |+|.+|..+++. .| .+|++++.+++.++......+.. ..++.++.+|+.+... .
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G-~~Vi~~~r~~~~~~~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAG-AKVVLASRRVERLKELRAEIEAE----GGAAHVVSLDVTDYQSIKAAVAHAE 81 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEecCCCHHHHHHHHHHHH
Confidence 356777544 777777777753 23 37999999998877666655431 1357888889865310 0
Q ss_pred -ccCCccEEEECCC
Q 044572 367 -WLVGSDVLVVDPP 379 (457)
Q Consensus 367 -~~~~~D~vi~DPP 379 (457)
..+..|++|..-.
T Consensus 82 ~~~~~~d~li~~ag 95 (258)
T PRK06949 82 TEAGTIDILVNNSG 95 (258)
T ss_pred HhcCCCCEEEECCC
Confidence 0135788877554
No 445
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=29.59 E-value=1.1e+02 Score=30.28 Aligned_cols=44 Identities=23% Similarity=0.050 Sum_probs=29.4
Q ss_pred CCCCeEEEEcc-cccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH
Q 044572 297 PYGASVTDLYA-GAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340 (457)
Q Consensus 297 ~~~~~vLDl~c-G~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~ 340 (457)
.+|++||=.++ +.|.+++.+|+..|+++|++++.+++-.+.+++
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~ 206 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA 206 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 35778776644 233344556666677669999999988777643
No 446
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=29.43 E-value=1.1e+02 Score=30.96 Aligned_cols=42 Identities=21% Similarity=0.220 Sum_probs=29.3
Q ss_pred CCCCeEEEEcccccHHH---HHHHhhCCCCEEEEEeCCHHHHHHHHH
Q 044572 297 PYGASVTDLYAGAGVIG---LSLAAARKCRSVKCVEINKESQLSFEK 340 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~s---l~lA~~~~~~~V~gVE~~~~av~~A~~ 340 (457)
.+|++||=.+ .|.+| +.+|+..|+++|++++.+++-.+.+++
T Consensus 186 ~~g~~VlV~G--~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~ 230 (369)
T cd08301 186 KKGSTVAIFG--LGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK 230 (369)
T ss_pred CCCCEEEEEC--CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 4678877554 35555 455666666689999999988777743
No 447
>KOG2098 consensus Predicted N6-adenine RNA methylase [RNA processing and modification]
Probab=29.40 E-value=33 Score=35.78 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=23.0
Q ss_pred EEEEEccCCcCcccccCCccEEEECCCC
Q 044572 353 ISWHNADNSIEPLSWLVGSDVLVVDPPR 380 (457)
Q Consensus 353 v~~~~~d~~~~~~~~~~~~D~vi~DPPR 380 (457)
.+||+.|+..+-...+++|.||+.|||.
T Consensus 372 ~QWI~CDiR~~dm~iLGkFaVVmADPpW 399 (591)
T KOG2098|consen 372 PQWICCDIRYLDMSILGKFAVVMADPPW 399 (591)
T ss_pred cceEEeeceeeeeeeeceeEEEeeCCCc
Confidence 4688888877666667899999999995
No 448
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=29.38 E-value=40 Score=32.19 Aligned_cols=31 Identities=23% Similarity=0.248 Sum_probs=17.6
Q ss_pred cEEEEEccCCcCcccccCCccEEEECCCCCC
Q 044572 352 NISWHNADNSIEPLSWLVGSDVLVVDPPRKG 382 (457)
Q Consensus 352 nv~~~~~d~~~~~~~~~~~~D~vi~DPPR~G 382 (457)
++++.+.|..+.+......-|+|.+|||+.+
T Consensus 159 ~~~i~~~d~~~~~~~~~~~~d~vYlDPPY~~ 189 (260)
T PF02086_consen 159 NVEIENRDFDEVIERYDSPNDFVYLDPPYYS 189 (260)
T ss_dssp HEEEEEC-CHGGGTT--TTE-EEEE--S-TT
T ss_pred CceeEehhHHHHHhhccCCCeEEEEcCcccc
Confidence 3788888877665443345689999999865
No 449
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=29.35 E-value=2.8e+02 Score=25.66 Aligned_cols=75 Identities=13% Similarity=0.134 Sum_probs=47.3
Q ss_pred CCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc------ccc--
Q 044572 299 GASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP------LSW-- 367 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~------~~~-- 367 (457)
++++| +-.|+|.+|..+++. .| .+|+.++.++..++.+.+.++.. ..++.++..|+.+.. ...
T Consensus 5 ~~~~l-ItG~~g~iG~~~a~~l~~~G-~~vi~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (253)
T PRK08217 5 DKVIV-ITGGAQGLGRAMAEYLAQKG-AKLALIDLNQEKLEEAVAECGAL----GTEVRGYAANVTDEEDVEATFAQIAE 78 (253)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhc----CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 56777 444577778777653 23 37999999987776665555432 246788888976521 111
Q ss_pred -cCCccEEEECCC
Q 044572 368 -LVGSDVLVVDPP 379 (457)
Q Consensus 368 -~~~~D~vi~DPP 379 (457)
....|.||...-
T Consensus 79 ~~~~id~vi~~ag 91 (253)
T PRK08217 79 DFGQLNGLINNAG 91 (253)
T ss_pred HcCCCCEEEECCC
Confidence 135788887643
No 450
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=29.18 E-value=1.6e+02 Score=29.98 Aligned_cols=76 Identities=20% Similarity=0.179 Sum_probs=43.8
Q ss_pred CCCeEEEEccc-ccH-HHHHHHhhCCCCEEEEEeCCH-------------------HHHHHHHHHHhhCCCCCCCcEEEE
Q 044572 298 YGASVTDLYAG-AGV-IGLSLAAARKCRSVKCVEINK-------------------ESQLSFEKTVSRLPKSVDGNISWH 356 (457)
Q Consensus 298 ~~~~vLDl~cG-~G~-~sl~lA~~~~~~~V~gVE~~~-------------------~av~~A~~Na~~~~~~~~~nv~~~ 356 (457)
.+.+||=+||| .|. ++..|| +.|.++++.||-+. .=++.|++.++.. |-.-+++.+
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~--np~v~v~~~ 103 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLA-GAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLAL--NPDVKVTVS 103 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHH--CCCcEEEEE
Confidence 35788888886 455 444455 46789999999875 1234455555543 222345555
Q ss_pred EccCCcC-cccccCCccEEEE
Q 044572 357 NADNSIE-PLSWLVGSDVLVV 376 (457)
Q Consensus 357 ~~d~~~~-~~~~~~~~D~vi~ 376 (457)
...+... ...+...+|+||.
T Consensus 104 ~~~i~~~~~~~~~~~~DvVvd 124 (355)
T PRK05597 104 VRRLTWSNALDELRDADVILD 124 (355)
T ss_pred EeecCHHHHHHHHhCCCEEEE
Confidence 4444321 1123457898876
No 451
>PF05063 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladenosine (m6A) is present at internal sites in eukaryotic mRNA. It is present only within a defined sequence context that has been shown to be conserved across species from plants to man. Despite its ubiquity and conserved sequence specificity, the functional significance of this modification remains a mystery [], []. MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA N6-adenosine-methyltransferase (MTase), an enzyme that sequence-specifically methylates adenines in pre-mRNAs. Proteins with sequence similarity to MT-A70 have been identified in eukaryotes and prokaryotes. The resulting family is defined by sequence similarity in the carboxyl-proximal regions of the respective proteins. The amino-proximal regions of the eukaryotic proteins are highly diverse, often Pro-rich, and are conserved only within individual subfamilies []. Corresponding regions are not present in prokaryotic members of the family. MT-A70-like proteins contain examples of some of the consensus methyltransferase motifs that have been derived from mutational and structural studies of bacterial DNA methyltransferases, including the universally conserved motif IV catalytic residues and a proposed motif I (AdoMet binding) element []. The MT-A70-like family comprises four subfamilies with varying degrees of interrelatedness. One subfamily is a small group of bacterial DNA: m6A MTases. The other three are paralogous eukaryotic lineages, two of which have not been associated with MTase activity but include proteins that regulate mRNA levels via unknown mechanisms apparently not involving methylation []. Some proteins known to belong to the MT-A70-like family are listed below: Human N6-adenosine-methyltransferase 70 kDa subunit (MT-A70) (2.1.1.62 from EC). Yeast N6-adenosine-methyltransferase IME4 (2.1.1.62 from EC), which is important for induction of sporulation. Yeast karyogamy protein KAR4, a phosphoprotein required for expression of karyogamy-specific genes during mating and that it also acts during mitosis and meiosis. It has been suggested that KAR4 is inactive for methyltransfer and may not even bind AdoMet. ; GO: 0008168 methyltransferase activity, 0006139 nucleobase-containing compound metabolic process
Probab=29.17 E-value=29 Score=31.53 Aligned_cols=9 Identities=56% Similarity=0.999 Sum_probs=8.7
Q ss_pred ccEEEECCC
Q 044572 371 SDVLVVDPP 379 (457)
Q Consensus 371 ~D~vi~DPP 379 (457)
||+|++|||
T Consensus 1 fdvI~~DPP 9 (176)
T PF05063_consen 1 FDVIYADPP 9 (176)
T ss_pred CCEEEEeCC
Confidence 799999999
No 452
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=28.84 E-value=2.1e+02 Score=30.28 Aligned_cols=111 Identities=13% Similarity=-0.007 Sum_probs=62.1
Q ss_pred CCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEECC
Q 044572 299 GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVVDP 378 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~DP 378 (457)
+++|+=+|=|--+.+..-........|+..|.++........ .. ...++++..+.-.. .+...+|+||..|
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~--~~----~~~~i~~~~g~~~~---~~~~~~d~vV~SP 77 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQ--PL----LLEGIEVELGSHDD---EDLAEFDLVVKSP 77 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhh--hh----hccCceeecCccch---hccccCCEEEECC
Confidence 677877776655444332222223689999999888222222 11 12467777775443 2346799999999
Q ss_pred CCCCccHHHHHH--------------HHhcCCCCcEEEEeccCCCCCchhchhhHHHHH
Q 044572 379 PRKGLDSSLVHA--------------LQSIGSAERKAKSLSESSSSMVKEEKRPWILRA 423 (457)
Q Consensus 379 PR~Gl~~~v~~~--------------l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~ 423 (457)
--..-++.+.++ .+... ...+|-|++ .|+++..-.++..+
T Consensus 78 Gi~~~~p~v~~A~~~gi~i~~dieL~~r~~~-~~p~vaITG----TNGKTTTTsli~~~ 131 (448)
T COG0771 78 GIPPTHPLVEAAKAAGIEIIGDIELFYRLSG-EAPIVAITG----TNGKTTTTSLIAHL 131 (448)
T ss_pred CCCCCCHHHHHHHHcCCcEEeHHHHHHHhcC-CCCEEEEEC----CCchHHHHHHHHHH
Confidence 755545533222 22211 233888874 56676554444433
No 453
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=28.65 E-value=1.2e+02 Score=28.23 Aligned_cols=43 Identities=26% Similarity=0.232 Sum_probs=32.6
Q ss_pred CCCCeEEEEcccc-cHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH
Q 044572 297 PYGASVTDLYAGA-GVIGLSLAAARKCRSVKCVEINKESQLSFEK 340 (457)
Q Consensus 297 ~~~~~vLDl~cG~-G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~ 340 (457)
.++++||..++|+ |...+.+++..+ .+|++++.+++..+.++.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHH
Confidence 4688999998874 666666776555 689999999887776643
No 454
>TIGR03253 oxalate_frc formyl-CoA transferase. This enzyme, formyl-CoA transferase, transfers coenzyme A from formyl-CoA to oxalate. It forms a pathway, together with oxalyl-CoA decarboxylase, for oxalate degradation; decarboxylation by the latter gene regenerates formyl-CoA. The two enzymes typically are encoded by a two-gene operon.
Probab=28.57 E-value=1.5e+02 Score=30.86 Aligned_cols=95 Identities=17% Similarity=0.017 Sum_probs=54.2
Q ss_pred CCCeEEEEcccc-cH-HHHHHHhhCCCCEEEEEeCC--HHHHHHH---------HHHHhhCCCCCCCcEEEEEccCCcC-
Q 044572 298 YGASVTDLYAGA-GV-IGLSLAAARKCRSVKCVEIN--KESQLSF---------EKTVSRLPKSVDGNISWHNADNSIE- 363 (457)
Q Consensus 298 ~~~~vLDl~cG~-G~-~sl~lA~~~~~~~V~gVE~~--~~av~~A---------~~Na~~~~~~~~~nv~~~~~d~~~~- 363 (457)
+|-+|||+.... |- -+..||.. | ..|+=||-- .+..... -.-...| .|-+.+..|..+.
T Consensus 5 ~GirVldls~~~aGP~a~~lLAdl-G-AeVIKVE~p~~GD~~R~~~~~~~~~~s~~f~~~n-----r~Krsi~lDLk~~~ 77 (415)
T TIGR03253 5 DGIKVLDFTHVQSGPSCTQMLAWL-G-ADVIKIERPGVGDITRGQLRDIPDVDSLYFTMLN-----CNKRSITLNTKTPE 77 (415)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHc-C-CcEEEeCCCCCCccccccCCCCCCcccHHHHHhC-----CCCeEEEeeCCCHH
Confidence 588999998743 54 35556664 4 489999953 1111110 0001111 1225566676542
Q ss_pred ----cccccCCccEEEECCC-----CCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 364 ----PLSWLVGSDVLVVDPP-----RKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 364 ----~~~~~~~~D~vi~DPP-----R~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
+.++....||||-|=. |-|++.+.+. +. ..+|||+|
T Consensus 78 g~~~l~~Lv~~ADVvien~rpg~~~rlGL~~~~L~---~~--nP~LV~~s 122 (415)
T TIGR03253 78 GKEVLEELIKKADVMVENFGPGALDRMGFTWEYIQ---EI--NPRLILAS 122 (415)
T ss_pred HHHHHHHHHhhCCEEEECCCCChHHHcCCCHHHHH---Hh--CCCeEEEE
Confidence 2334467899998754 5577765443 44 46799998
No 455
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=28.52 E-value=1.3e+02 Score=29.93 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=30.6
Q ss_pred CCCCeEEEEccc-ccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH
Q 044572 297 PYGASVTDLYAG-AGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340 (457)
Q Consensus 297 ~~~~~vLDl~cG-~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~ 340 (457)
.++++||=.++| .|.+++.+|+..|+..|++++.+++-.+.+++
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~ 209 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE 209 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 467787766543 34455556766777789999999887776663
No 456
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=28.46 E-value=2.7e+02 Score=26.36 Aligned_cols=75 Identities=13% Similarity=-0.018 Sum_probs=43.8
Q ss_pred CCCeEEEEcccc-cHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc------ccc
Q 044572 298 YGASVTDLYAGA-GVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP------LSW 367 (457)
Q Consensus 298 ~~~~vLDl~cG~-G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~------~~~ 367 (457)
.++++|=.|+++ +.+|..+|+. .| .+|+.++.+.+..+.+++-.+.. ..+.++..|+.+.- ...
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G-~~v~l~~r~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~ 82 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALG-AELAVTYLNDKARPYVEPLAEEL-----DAPIFLPLDVREPGQLEAVFARI 82 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcC-CEEEEEeCChhhHHHHHHHHHhh-----ccceEEecCcCCHHHHHHHHHHH
Confidence 467888888776 3666666543 33 37888888865543333322221 12457788887531 111
Q ss_pred ---cCCccEEEECC
Q 044572 368 ---LVGSDVLVVDP 378 (457)
Q Consensus 368 ---~~~~D~vi~DP 378 (457)
.+..|++|.+.
T Consensus 83 ~~~~g~ld~lv~nA 96 (258)
T PRK07533 83 AEEWGRLDFLLHSI 96 (258)
T ss_pred HHHcCCCCEEEEcC
Confidence 14679988764
No 457
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=28.34 E-value=2.8e+02 Score=25.94 Aligned_cols=74 Identities=18% Similarity=0.243 Sum_probs=47.9
Q ss_pred CCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc------c---
Q 044572 299 GASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL------S--- 366 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~------~--- 366 (457)
++++| +-.|+|.+|..++.. .| .+|+.++.+++..+.+.+.++.. ..++.++.+|+.+... .
T Consensus 7 ~~~vl-ItGasg~iG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~ 80 (262)
T PRK13394 7 GKTAV-VTGAASGIGKEIALELARAG-AAVAIADLNQDGANAVADEINKA----GGKAIGVAMDVTNEDAVNAGIDKVAE 80 (262)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHHHHhc----CceEEEEECCCCCHHHHHHHHHHHHH
Confidence 56666 677778888777653 23 37999999998776666555432 2357889999875321 0
Q ss_pred ccCCccEEEECC
Q 044572 367 WLVGSDVLVVDP 378 (457)
Q Consensus 367 ~~~~~D~vi~DP 378 (457)
.....|+||...
T Consensus 81 ~~~~~d~vi~~a 92 (262)
T PRK13394 81 RFGSVDILVSNA 92 (262)
T ss_pred HcCCCCEEEECC
Confidence 013478887754
No 458
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=28.21 E-value=3.5e+02 Score=27.57 Aligned_cols=83 Identities=18% Similarity=0.210 Sum_probs=49.1
Q ss_pred cHHHHHHHhh---C-CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcC--cccccCCccEEEE-CCCCCC
Q 044572 310 GVIGLSLAAA---R-KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIE--PLSWLVGSDVLVV-DPPRKG 382 (457)
Q Consensus 310 G~~sl~lA~~---~-~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~--~~~~~~~~D~vi~-DPPR~G 382 (457)
|.+|-.+++. . ...+|+..|.+.+.++...+.. ...++.++..|+.+. +.+.....|+||. =||.
T Consensus 7 G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~------~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-- 78 (386)
T PF03435_consen 7 GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL------LGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-- 78 (386)
T ss_dssp SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--------TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG--
T ss_pred cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc------cccceeEEEEecCCHHHHHHHHhcCCEEEECCccc--
Confidence 6666555532 2 2238999999999876554432 125789999998763 2333467798884 4565
Q ss_pred ccHHHHHHHHhcCCCCcEEEEe
Q 044572 383 LDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 383 l~~~v~~~l~~~~~~~~ivyvs 404 (457)
.+..++++..+.+ +-|+.
T Consensus 79 ~~~~v~~~~i~~g----~~yvD 96 (386)
T PF03435_consen 79 FGEPVARACIEAG----VHYVD 96 (386)
T ss_dssp GHHHHHHHHHHHT-----EEEE
T ss_pred hhHHHHHHHHHhC----CCeec
Confidence 4556777666654 45664
No 459
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=28.13 E-value=62 Score=29.74 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=18.1
Q ss_pred ccEEEECCCCCCccH---------------------HHHHHHHhcCCCCcEEEEe
Q 044572 371 SDVLVVDPPRKGLDS---------------------SLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 371 ~D~vi~DPPR~Gl~~---------------------~v~~~l~~~~~~~~ivyvs 404 (457)
.|+|+.|||+..... +++..+.++..+++.+|+.
T Consensus 1 VdliitDPPY~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~ 55 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNYFDYGDNKNHEEYLEWMEEWLKECYRVLKPGGSIFIF 55 (231)
T ss_dssp EEEEEE---TSSSCS-----CSCHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCEEEECCCCCCCCCcchhhhccCCCCHHHHHHHHHHHHHHHHhhcCCCeeEEEE
Confidence 389999999752221 2333333333488888887
No 460
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=28.09 E-value=1.3e+02 Score=31.15 Aligned_cols=43 Identities=14% Similarity=0.165 Sum_probs=29.3
Q ss_pred CCCCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHH
Q 044572 297 PYGASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSFEKT 341 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~N 341 (457)
.++++||=+.+| |.-.+.+.. .+.++|++||+|+.-+...+-.
T Consensus 34 ~~~d~vl~ItSa-G~N~L~yL~-~~P~~I~aVDlNp~Q~aLleLK 76 (380)
T PF11899_consen 34 GPDDRVLTITSA-GCNALDYLL-AGPKRIHAVDLNPAQNALLELK 76 (380)
T ss_pred CCCCeEEEEccC-CchHHHHHh-cCCceEEEEeCCHHHHHHHHHH
Confidence 478888877653 433344443 3578999999999877666543
No 461
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=28.01 E-value=2.8e+02 Score=25.93 Aligned_cols=33 Identities=30% Similarity=0.311 Sum_probs=24.1
Q ss_pred CCCeEEEEccc-ccH-HHHHHHhhCCCCEEEEEeCC
Q 044572 298 YGASVTDLYAG-AGV-IGLSLAAARKCRSVKCVEIN 331 (457)
Q Consensus 298 ~~~~vLDl~cG-~G~-~sl~lA~~~~~~~V~gVE~~ 331 (457)
...+|+=+||| .|. ++..|++ .|..+++.+|.+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~-~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALAR-SGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHH-cCCCeEEEEeCC
Confidence 35678888886 465 5555554 678899999998
No 462
>PRK03525 crotonobetainyl-CoA:carnitine CoA-transferase; Provisional
Probab=27.70 E-value=1.1e+02 Score=31.76 Aligned_cols=95 Identities=13% Similarity=0.042 Sum_probs=54.8
Q ss_pred CCCeEEEEcccc-cH-HHHHHHhhCCCCEEEEEeCC--HHHHHHHH-HHHhhCCCCCCCcEEEEEccCCcC-----cccc
Q 044572 298 YGASVTDLYAGA-GV-IGLSLAAARKCRSVKCVEIN--KESQLSFE-KTVSRLPKSVDGNISWHNADNSIE-----PLSW 367 (457)
Q Consensus 298 ~~~~vLDl~cG~-G~-~sl~lA~~~~~~~V~gVE~~--~~av~~A~-~Na~~~~~~~~~nv~~~~~d~~~~-----~~~~ 367 (457)
+|-+|||+.... |- -+..||.. | .+||=||-= .+.....- .....| .|-+-+..|..+. +.++
T Consensus 13 ~GirVldls~~~aGP~a~~lLAdl-G-AeVIKVE~p~~GD~~R~~~~~~~~~N-----rgKrsi~LDLk~~~Gr~~l~~L 85 (405)
T PRK03525 13 AGLRVVFSGIEIAGPFAGQMFAEW-G-AEVIWIENVAWADTIRVQPNYPQLSR-----RNLHALSLNIFKDEGREAFLKL 85 (405)
T ss_pred CCCEEEEecchhHHHHHHHHHHHc-C-CcEEEECCCCCCCccccccchhhhcc-----CCCeeEEEeCCCHHHHHHHHHH
Confidence 589999998753 54 45666764 4 489999942 11111000 001111 1224566665432 2334
Q ss_pred cCCccEEEEC-CC----CCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 368 LVGSDVLVVD-PP----RKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 368 ~~~~D~vi~D-PP----R~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
....||+|-| .| |-|++.+.+. +. ..++||+|
T Consensus 86 i~~ADVvien~rpg~~~rlGl~~e~L~---~~--nP~LIy~s 122 (405)
T PRK03525 86 METTDIFIEASKGPAFARRGITDEVLW---EH--NPKLVIAH 122 (405)
T ss_pred HHhCCEEEECCCccHHHHcCCCHHHHH---Hh--CCCeEEEE
Confidence 4679999998 34 6788876544 44 47799998
No 463
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=27.69 E-value=1.2e+02 Score=30.53 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=29.5
Q ss_pred CCCCeEEEEcccccHHH---HHHHhhCCCCEEEEEeCCHHHHHHHHH
Q 044572 297 PYGASVTDLYAGAGVIG---LSLAAARKCRSVKCVEINKESQLSFEK 340 (457)
Q Consensus 297 ~~~~~vLDl~cG~G~~s---l~lA~~~~~~~V~gVE~~~~av~~A~~ 340 (457)
.+|++||=.+ .|.++ +.+|+..|+.+|++++.+++-.+.+++
T Consensus 183 ~~g~~vlV~G--~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~ 227 (365)
T cd08277 183 EPGSTVAVFG--LGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE 227 (365)
T ss_pred CCCCEEEEEC--CCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 4678877554 45555 445666676689999999888777753
No 464
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=27.63 E-value=1.2e+02 Score=30.31 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=31.2
Q ss_pred CCCCeEEEEcc-cccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH
Q 044572 297 PYGASVTDLYA-GAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340 (457)
Q Consensus 297 ~~~~~vLDl~c-G~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~ 340 (457)
.+|++||=.++ |.|.+++.+|+..|+ +|++++.+++-.+.|++
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~ 207 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALA 207 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Confidence 46888887764 355566667776665 69999999988777654
No 465
>PRK06181 short chain dehydrogenase; Provisional
Probab=27.55 E-value=3.1e+02 Score=25.78 Aligned_cols=73 Identities=19% Similarity=0.155 Sum_probs=46.2
Q ss_pred CeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc------cc---
Q 044572 300 ASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL------SW--- 367 (457)
Q Consensus 300 ~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~------~~--- 367 (457)
.++| +-.|+|.+|..+++. .+ .+|++++.++...+.+.+.++.. ..++.++.+|+.+... ..
T Consensus 2 ~~vl-VtGasg~iG~~la~~l~~~g-~~Vi~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 75 (263)
T PRK06181 2 KVVI-ITGASEGIGRALAVRLARAG-AQLVLAARNETRLASLAQELADH----GGEALVVPTDVSDAEACERLIEAAVAR 75 (263)
T ss_pred CEEE-EecCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3455 455777888877642 23 48999999988777665555432 2367888999876321 00
Q ss_pred cCCccEEEECC
Q 044572 368 LVGSDVLVVDP 378 (457)
Q Consensus 368 ~~~~D~vi~DP 378 (457)
....|+||...
T Consensus 76 ~~~id~vi~~a 86 (263)
T PRK06181 76 FGGIDILVNNA 86 (263)
T ss_pred cCCCCEEEECC
Confidence 13578887764
No 466
>PRK11430 putative CoA-transferase; Provisional
Probab=27.41 E-value=1.7e+02 Score=30.18 Aligned_cols=95 Identities=18% Similarity=0.026 Sum_probs=54.6
Q ss_pred CCCeEEEEcccc-cH-HHHHHHhhCCCCEEEEEeCCH--HHHHHHH--------HHHhhCCCCCCCcEEEEEccCCcC--
Q 044572 298 YGASVTDLYAGA-GV-IGLSLAAARKCRSVKCVEINK--ESQLSFE--------KTVSRLPKSVDGNISWHNADNSIE-- 363 (457)
Q Consensus 298 ~~~~vLDl~cG~-G~-~sl~lA~~~~~~~V~gVE~~~--~av~~A~--------~Na~~~~~~~~~nv~~~~~d~~~~-- 363 (457)
+|-+|||+.... |- -+..||.. | .+||=||.-. +...... .-...| .|-+-+..|....
T Consensus 11 ~GirVldls~~~aGP~a~~~LAdl-G-AeVIKVE~p~~GD~~R~~~p~~~~~s~~f~~~N-----rgKrsv~lDLk~~~G 83 (381)
T PRK11430 11 EGLLVIDMTHVLNGPFGTQLLCNM-G-ARVIKVEPPGHGDDTRTFGPYVDGQSLYYSFIN-----HGKESVVLDLKNDHD 83 (381)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHc-C-CCEEEECCCCCCccccccCCCCCCccHHHHHhC-----CCCeEEEecCCCHHH
Confidence 588999998764 44 45556664 4 4899999531 1111000 001111 2235566676542
Q ss_pred ---cccccCCccEEEECCC-----CCCccHHHHHHHHhcCCCCcEEEEe
Q 044572 364 ---PLSWLVGSDVLVVDPP-----RKGLDSSLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 364 ---~~~~~~~~D~vi~DPP-----R~Gl~~~v~~~l~~~~~~~~ivyvs 404 (457)
+.++....||+|-|=. |-|++.+.+. +. ..+|||+|
T Consensus 84 r~~~~~L~~~ADVvien~rpg~~~rlGl~y~~L~---~~--nP~LI~~s 127 (381)
T PRK11430 84 KSIFINMLKQADVLAENFRPGTMEKLGFSWETLQ---EI--NPRLIYAS 127 (381)
T ss_pred HHHHHHHHhcCCEEEeCCCccHHHHcCCCHHHHH---HH--CCCceEEe
Confidence 2334567999998765 4577765544 44 47799987
No 467
>PHA02518 ParA-like protein; Provisional
Probab=27.27 E-value=2e+02 Score=26.13 Aligned_cols=12 Identities=17% Similarity=0.365 Sum_probs=10.0
Q ss_pred CEEEEEeCCHHH
Q 044572 323 RSVKCVEINKES 334 (457)
Q Consensus 323 ~~V~gVE~~~~a 334 (457)
.+|..||.++..
T Consensus 30 ~~vlliD~D~q~ 41 (211)
T PHA02518 30 HKVLLVDLDPQG 41 (211)
T ss_pred CeEEEEeCCCCC
Confidence 589999999764
No 468
>PTZ00357 methyltransferase; Provisional
Probab=26.92 E-value=1.8e+02 Score=32.56 Aligned_cols=94 Identities=14% Similarity=0.079 Sum_probs=55.4
Q ss_pred eEEEEcccccHH---HHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHh---hCCC---CCCCcEEEEEccCCcCcccc---
Q 044572 301 SVTDLYAGAGVI---GLSLAAARKC-RSVKCVEINKESQLSFEKTVS---RLPK---SVDGNISWHNADNSIEPLSW--- 367 (457)
Q Consensus 301 ~vLDl~cG~G~~---sl~lA~~~~~-~~V~gVE~~~~av~~A~~Na~---~~~~---~~~~nv~~~~~d~~~~~~~~--- 367 (457)
.|+=+|+|=|-+ ++.++...+. -+|++||.|+.++.....+.+ .-.+ .....|+++..|...+....
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 478899999975 4445543332 379999999776555444432 1110 00235899999987763211
Q ss_pred -------cCCccEEEECCC-C---CCccHHHHHHHHhc
Q 044572 368 -------LVGSDVLVVDPP-R---KGLDSSLVHALQSI 394 (457)
Q Consensus 368 -------~~~~D~vi~DPP-R---~Gl~~~v~~~l~~~ 394 (457)
.+++|+||..== - .-|+++.++.+.+.
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrf 820 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQ 820 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHHHHHHh
Confidence 125788875221 1 23667777776543
No 469
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=26.78 E-value=63 Score=31.07 Aligned_cols=74 Identities=18% Similarity=0.142 Sum_probs=51.2
Q ss_pred CCCeEEEEcccccHHHHHHHhhCC-------C--CEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc----
Q 044572 298 YGASVTDLYAGAGVIGLSLAAARK-------C--RSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP---- 364 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~~-------~--~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~---- 364 (457)
.-++++|||+--|..+..|+++-. . +++++||+.+-| -+.-|.-+++|+...-
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma--------------PI~GV~qlq~DIT~~stae~ 106 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA--------------PIEGVIQLQGDITSASTAEA 106 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--------------ccCceEEeecccCCHhHHHH
Confidence 347899999999999999987421 1 239999986543 2345677888887531
Q ss_pred --cccc-CCccEEEECCC--CCCccH
Q 044572 365 --LSWL-VGSDVLVVDPP--RKGLDS 385 (457)
Q Consensus 365 --~~~~-~~~D~vi~DPP--R~Gl~~ 385 (457)
..+. ++.|+||.|=- -.|+|.
T Consensus 107 Ii~hfggekAdlVvcDGAPDvTGlHd 132 (294)
T KOG1099|consen 107 IIEHFGGEKADLVVCDGAPDVTGLHD 132 (294)
T ss_pred HHHHhCCCCccEEEeCCCCCcccccc
Confidence 1122 36899999953 678775
No 470
>PF11058 Ral: Antirestriction protein Ral ; InterPro: IPR022759 Ral alleviates restriction and enhances modification by the E.coli restriction and modification system [].
Probab=26.67 E-value=20 Score=25.82 Aligned_cols=16 Identities=31% Similarity=0.931 Sum_probs=13.7
Q ss_pred CCCCCCCcCccCccCc
Q 044572 52 LQCPHFQSCSGCTHEF 67 (457)
Q Consensus 52 p~C~~f~~CGGC~lqh 67 (457)
.-|.-|..|.||.+|.
T Consensus 9 qwc~~f~~c~gckl~~ 24 (66)
T PF11058_consen 9 QWCSQFKRCNGCKLQS 24 (66)
T ss_pred hHHHhhhcccCcccch
Confidence 3488899999999985
No 471
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=26.62 E-value=83 Score=30.88 Aligned_cols=75 Identities=19% Similarity=0.188 Sum_probs=43.5
Q ss_pred EEEEccCCcCcccccCCccEEEECCCCC----CccHHHHHHHHhcCCCCcE------EEEeccCCCCCchhchhhHHHHH
Q 044572 354 SWHNADNSIEPLSWLVGSDVLVVDPPRK----GLDSSLVHALQSIGSAERK------AKSLSESSSSMVKEEKRPWILRA 423 (457)
Q Consensus 354 ~~~~~d~~~~~~~~~~~~D~vi~DPPR~----Gl~~~v~~~l~~~~~~~~i------vyvs~~~~~c~~~~~~~~~~~~~ 423 (457)
+..+-|+..+.... .+|++.+|||+. |..--+++.+.+..+|.-+ =|.--.|+.|........|.++.
T Consensus 189 kv~qeDaN~LikkI--~~DilYLDpPYN~rqYs~nYhLLe~IA~y~kP~~~gk~~~~d~~~~KSsfcs~~~a~~af~eLI 266 (330)
T COG3392 189 KVYQEDANELIKKI--SGDILYLDPPYNARQYSANYHLLETIARYEKPEPKGKTGLIDYSWQKSSFCSRKQATQAFEELI 266 (330)
T ss_pred HHHHhhHHHHHHhc--CCCEEEeCCCccccccchHHHHHHHHHhcCCcccccccCCCChhhhhhhhhHHHHHHHHHHHHH
Confidence 34455555444332 469999999964 3333577788777643322 22222455676665666677776
Q ss_pred HHhcccc
Q 044572 424 KEASVQI 430 (457)
Q Consensus 424 ~~~~~~~ 430 (457)
..+..++
T Consensus 267 ~d~k~ky 273 (330)
T COG3392 267 SDAKFKY 273 (330)
T ss_pred hhcCccE
Confidence 6655444
No 472
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=26.24 E-value=3.5e+02 Score=25.35 Aligned_cols=76 Identities=21% Similarity=0.148 Sum_probs=49.9
Q ss_pred CCCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc------cc-
Q 044572 298 YGASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL------SW- 367 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~------~~- 367 (457)
+++++|=.| |+|.+|..+|+. .| .+|+.++.+.+.++.+...++.. ..++.++.+|+.+... ..
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~i~~~----~~~~~~~~~Dl~d~~~i~~~~~~~~ 84 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAG-ARVVLSARKAEELEEAAAHLEAL----GIDALWIAADVADEADIERLAEETL 84 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhc----CCeEEEEEccCCCHHHHHHHHHHHH
Confidence 456777444 788888887764 23 37999999988777666555432 2467889999876311 11
Q ss_pred --cCCccEEEECCC
Q 044572 368 --LVGSDVLVVDPP 379 (457)
Q Consensus 368 --~~~~D~vi~DPP 379 (457)
....|.||....
T Consensus 85 ~~~~~id~vi~~ag 98 (259)
T PRK08213 85 ERFGHVDILVNNAG 98 (259)
T ss_pred HHhCCCCEEEECCC
Confidence 135788887654
No 473
>KOG2356 consensus Transcriptional activator, adenine-specific DNA methyltransferase [Transcription; Signal transduction mechanisms]
Probab=26.23 E-value=25 Score=34.77 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=20.0
Q ss_pred cEEEEEccCCcCcccc---cCCccEEEECCCC
Q 044572 352 NISWHNADNSIEPLSW---LVGSDVLVVDPPR 380 (457)
Q Consensus 352 nv~~~~~d~~~~~~~~---~~~~D~vi~DPPR 380 (457)
+-+|+.||+.+...-. ...+|+||+|||.
T Consensus 163 kSsF~~gDv~~~~qll~~H~llpdlIIiDPPW 194 (366)
T KOG2356|consen 163 KSSFHVGDVKDIEQLLRAHDLLPDLIIIDPPW 194 (366)
T ss_pred ccceecccHHHHHHHhHHHhhcCCeEEeCCCC
Confidence 4589999987642111 1247999999994
No 474
>PRK06172 short chain dehydrogenase; Provisional
Probab=25.79 E-value=3.7e+02 Score=25.01 Aligned_cols=75 Identities=15% Similarity=0.050 Sum_probs=48.1
Q ss_pred CCCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc--cc------
Q 044572 298 YGASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LS------ 366 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~--~~------ 366 (457)
+++++|=.| |+|.+|..+++. .| .+|+.++.+++.++.+.+.++.. ..++.++.+|+.+.. ..
T Consensus 6 ~~k~ilItG-as~~iG~~ia~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~i~~~~~~~~ 79 (253)
T PRK06172 6 SGKVALVTG-GAAGIGRATALAFAREG-AKVVVADRDAAGGEETVALIREA----GGEALFVACDVTRDAEVKALVEQTI 79 (253)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhc----CCceEEEEcCCCCHHHHHHHHHHHH
Confidence 356777665 466666666542 23 47999999988777666665542 246889999987531 11
Q ss_pred -ccCCccEEEECC
Q 044572 367 -WLVGSDVLVVDP 378 (457)
Q Consensus 367 -~~~~~D~vi~DP 378 (457)
..++.|++|.+.
T Consensus 80 ~~~g~id~li~~a 92 (253)
T PRK06172 80 AAYGRLDYAFNNA 92 (253)
T ss_pred HHhCCCCEEEECC
Confidence 113578888765
No 475
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=25.74 E-value=42 Score=27.75 Aligned_cols=13 Identities=31% Similarity=0.468 Sum_probs=11.0
Q ss_pred CccEEEECCCCCC
Q 044572 370 GSDVLVVDPPRKG 382 (457)
Q Consensus 370 ~~D~vi~DPPR~G 382 (457)
+||+||-|||+..
T Consensus 2 kFD~VIGNPPY~~ 14 (106)
T PF07669_consen 2 KFDVVIGNPPYIK 14 (106)
T ss_pred CcCEEEECCCChh
Confidence 5999999999743
No 476
>PRK09186 flagellin modification protein A; Provisional
Probab=25.70 E-value=3.3e+02 Score=25.38 Aligned_cols=76 Identities=18% Similarity=0.184 Sum_probs=46.5
Q ss_pred CCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc--ccc------
Q 044572 299 GASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LSW------ 367 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~--~~~------ 367 (457)
++++| +-.|+|.+|..+|+. .| .+|+++..+++.++.+...+... .....+.++.+|+.+.- ...
T Consensus 4 ~k~vl-ItGas~giG~~~a~~l~~~g-~~v~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (256)
T PRK09186 4 GKTIL-ITGAGGLIGSALVKAILEAG-GIVIAADIDKEALNELLESLGKE--FKSKKLSLVELDITDQESLEEFLSKSAE 79 (256)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCC-CEEEEEecChHHHHHHHHHHHhh--cCCCceeEEEecCCCHHHHHHHHHHHHH
Confidence 45666 445567777777653 23 47999999988777666555321 11235677788987631 111
Q ss_pred -cCCccEEEECC
Q 044572 368 -LVGSDVLVVDP 378 (457)
Q Consensus 368 -~~~~D~vi~DP 378 (457)
....|+||.+-
T Consensus 80 ~~~~id~vi~~A 91 (256)
T PRK09186 80 KYGKIDGAVNCA 91 (256)
T ss_pred HcCCccEEEECC
Confidence 13479888765
No 477
>PRK06139 short chain dehydrogenase; Provisional
Probab=25.58 E-value=4e+02 Score=26.67 Aligned_cols=75 Identities=19% Similarity=0.133 Sum_probs=48.7
Q ss_pred CCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc--cc-------
Q 044572 299 GASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LS------- 366 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~--~~------- 366 (457)
++++| +-.|+|.+|..+++. .| .+|+.++.+++.++...+.++..+ .++.++..|+.+.. ..
T Consensus 7 ~k~vl-ITGAs~GIG~aia~~la~~G-~~Vvl~~R~~~~l~~~~~~~~~~g----~~~~~~~~Dv~d~~~v~~~~~~~~~ 80 (330)
T PRK06139 7 GAVVV-ITGASSGIGQATAEAFARRG-ARLVLAARDEEALQAVAEECRALG----AEVLVVPTDVTDADQVKALATQAAS 80 (330)
T ss_pred CCEEE-EcCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcC----CcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 55666 455567777766642 33 479999999998887777765421 35778888887531 11
Q ss_pred ccCCccEEEECCC
Q 044572 367 WLVGSDVLVVDPP 379 (457)
Q Consensus 367 ~~~~~D~vi~DPP 379 (457)
..+..|++|.+--
T Consensus 81 ~~g~iD~lVnnAG 93 (330)
T PRK06139 81 FGGRIDVWVNNVG 93 (330)
T ss_pred hcCCCCEEEECCC
Confidence 1246898887653
No 478
>PLN02240 UDP-glucose 4-epimerase
Probab=25.57 E-value=4.9e+02 Score=25.68 Aligned_cols=76 Identities=16% Similarity=0.189 Sum_probs=39.9
Q ss_pred CCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHH-HHHHHhhCCCCCCCcEEEEEccCCcCcc--ccc--CC
Q 044572 299 GASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLS-FEKTVSRLPKSVDGNISWHNADNSIEPL--SWL--VG 370 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~-A~~Na~~~~~~~~~nv~~~~~d~~~~~~--~~~--~~ 370 (457)
+++|| +-.|+|.+|..+++. .+ .+|++++........ ..+...... ....+++++.+|+.+... ... ..
T Consensus 5 ~~~vl-ItGatG~iG~~l~~~L~~~g-~~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~l~~~~~~~~ 81 (352)
T PLN02240 5 GRTIL-VTGGAGYIGSHTVLQLLLAG-YKVVVIDNLDNSSEEALRRVKELAG-DLGDNLVFHKVDLRDKEALEKVFASTR 81 (352)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHCC-CEEEEEeCCCcchHHHHHHHHHhhc-ccCccceEEecCcCCHHHHHHHHHhCC
Confidence 45666 455889888877753 23 479999864221111 111111100 112357889999875321 111 25
Q ss_pred ccEEEEC
Q 044572 371 SDVLVVD 377 (457)
Q Consensus 371 ~D~vi~D 377 (457)
+|.||.-
T Consensus 82 ~d~vih~ 88 (352)
T PLN02240 82 FDAVIHF 88 (352)
T ss_pred CCEEEEc
Confidence 6877653
No 479
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=25.44 E-value=1.4e+02 Score=28.37 Aligned_cols=44 Identities=25% Similarity=0.257 Sum_probs=30.1
Q ss_pred CCCCeEEEEcccc-cHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH
Q 044572 297 PYGASVTDLYAGA-GVIGLSLAAARKCRSVKCVEINKESQLSFEK 340 (457)
Q Consensus 297 ~~~~~vLDl~cG~-G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~ 340 (457)
.++++||=.++|. |..++.+|+..++.+|++++.+++-.+.+++
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~ 140 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEA 140 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHH
Confidence 3678877665543 4555666666666569999999888776553
No 480
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=25.26 E-value=3.5e+02 Score=25.32 Aligned_cols=76 Identities=13% Similarity=0.020 Sum_probs=49.8
Q ss_pred CCCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc------c--
Q 044572 298 YGASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL------S-- 366 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~------~-- 366 (457)
.++++| +-.|+|.+|..+++. .| .+|+.++.+++.++.....++.. ..++.++..|+.+... .
T Consensus 9 ~~k~vl-ItGa~g~iG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~i~~~----~~~~~~~~~D~~~~~~~~~~~~~~~ 82 (255)
T PRK07523 9 TGRRAL-VTGSSQGIGYALAEGLAQAG-AEVILNGRDPAKLAAAAESLKGQ----GLSAHALAFDVTDHDAVRAAIDAFE 82 (255)
T ss_pred CCCEEE-EECCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhc----CceEEEEEccCCCHHHHHHHHHHHH
Confidence 467777 445688888887753 23 37999999988777666555431 1357888889875311 1
Q ss_pred -ccCCccEEEECCC
Q 044572 367 -WLVGSDVLVVDPP 379 (457)
Q Consensus 367 -~~~~~D~vi~DPP 379 (457)
.....|++|...-
T Consensus 83 ~~~~~~d~li~~ag 96 (255)
T PRK07523 83 AEIGPIDILVNNAG 96 (255)
T ss_pred HhcCCCCEEEECCC
Confidence 1235788888764
No 481
>PRK08703 short chain dehydrogenase; Provisional
Probab=24.78 E-value=2.9e+02 Score=25.53 Aligned_cols=59 Identities=10% Similarity=-0.075 Sum_probs=37.5
Q ss_pred CCCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCC
Q 044572 298 YGASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNS 361 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~ 361 (457)
.++++|=.| |+|.+|..+++. .| .+|++++.+++..+.....+... ....+.++..|+.
T Consensus 5 ~~k~vlItG-~sggiG~~la~~l~~~g-~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~~D~~ 66 (239)
T PRK08703 5 SDKTILVTG-ASQGLGEQVAKAYAAAG-ATVILVARHQKKLEKVYDAIVEA---GHPEPFAIRFDLM 66 (239)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHcC-CEEEEEeCChHHHHHHHHHHHHc---CCCCcceEEeeec
Confidence 356777666 577777776643 23 47999999998776665554431 1124566777764
No 482
>PRK07774 short chain dehydrogenase; Provisional
Probab=24.53 E-value=3.9e+02 Score=24.73 Aligned_cols=74 Identities=26% Similarity=0.199 Sum_probs=47.1
Q ss_pred CCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc------c---
Q 044572 299 GASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL------S--- 366 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~------~--- 366 (457)
++++| +..|+|.+|..+++. .| .+|+.++.++...+.....++.. ..++.++..|+.+... .
T Consensus 6 ~k~vl-ItGasg~iG~~la~~l~~~g-~~vi~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (250)
T PRK07774 6 DKVAI-VTGAAGGIGQAYAEALAREG-ASVVVADINAEGAERVAKQIVAD----GGTAIAVQVDVSDPDSAKAMADATVS 79 (250)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 55666 555778888888753 23 48999999987766655444321 1356788889876421 0
Q ss_pred ccCCccEEEECC
Q 044572 367 WLVGSDVLVVDP 378 (457)
Q Consensus 367 ~~~~~D~vi~DP 378 (457)
..+..|+||..-
T Consensus 80 ~~~~id~vi~~a 91 (250)
T PRK07774 80 AFGGIDYLVNNA 91 (250)
T ss_pred HhCCCCEEEECC
Confidence 113579888744
No 483
>PRK08267 short chain dehydrogenase; Provisional
Probab=24.52 E-value=2.1e+02 Score=26.92 Aligned_cols=71 Identities=20% Similarity=0.110 Sum_probs=44.9
Q ss_pred eEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc------cc----
Q 044572 301 SVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL------SW---- 367 (457)
Q Consensus 301 ~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~------~~---- 367 (457)
++|= -.|+|.+|..+++. .| .+|+.++.+++.++.+..... ..++.++++|+.+... ..
T Consensus 3 ~vlI-tGasg~iG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 74 (260)
T PRK08267 3 SIFI-TGAASGIGRATALLFAAEG-WRVGAYDINEAGLAALAAELG------AGNAWTGALDVTDRAAWDAALADFAAAT 74 (260)
T ss_pred EEEE-eCCCchHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHhc------CCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 3443 34567777766653 23 489999999988776655432 1468899999876321 11
Q ss_pred cCCccEEEECCC
Q 044572 368 LVGSDVLVVDPP 379 (457)
Q Consensus 368 ~~~~D~vi~DPP 379 (457)
.++.|+||...-
T Consensus 75 ~~~id~vi~~ag 86 (260)
T PRK08267 75 GGRLDVLFNNAG 86 (260)
T ss_pred CCCCCEEEECCC
Confidence 235799887654
No 484
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=24.20 E-value=2.7e+02 Score=29.00 Aligned_cols=73 Identities=16% Similarity=0.156 Sum_probs=45.7
Q ss_pred CCCeEEEEcccccHHHHHHHhhC--CCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc--ccccCCccE
Q 044572 298 YGASVTDLYAGAGVIGLSLAAAR--KCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP--LSWLVGSDV 373 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~~--~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~--~~~~~~~D~ 373 (457)
.++++| +-.|+|.+|..+++.. ...+|++++.+++.++... ... ..++..+..|+.+.. ....++.|+
T Consensus 177 ~gK~VL-ITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~---~~~----~~~v~~v~~Dvsd~~~v~~~l~~IDi 248 (406)
T PRK07424 177 KGKTVA-VTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEI---NGE----DLPVKTLHWQVGQEAALAELLEKVDI 248 (406)
T ss_pred CCCEEE-EeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH---hhc----CCCeEEEEeeCCCHHHHHHHhCCCCE
Confidence 467777 7778899999888631 1248999998876553221 110 123567777876531 122357899
Q ss_pred EEECC
Q 044572 374 LVVDP 378 (457)
Q Consensus 374 vi~DP 378 (457)
+|.+-
T Consensus 249 LInnA 253 (406)
T PRK07424 249 LIINH 253 (406)
T ss_pred EEECC
Confidence 88764
No 485
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=24.10 E-value=4.1e+02 Score=26.77 Aligned_cols=37 Identities=14% Similarity=0.145 Sum_probs=23.7
Q ss_pred CCCCeEEEEcc-cccHHHHHHHhhCCCCEEEEEeCCHHH
Q 044572 297 PYGASVTDLYA-GAGVIGLSLAAARKCRSVKCVEINKES 334 (457)
Q Consensus 297 ~~~~~vLDl~c-G~G~~sl~lA~~~~~~~V~gVE~~~~a 334 (457)
..|++||=.++ |.|.+++.+|+..|+ +|++++.+.+-
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~ 219 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNK 219 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcch
Confidence 35778776655 344455556666664 68888887654
No 486
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=24.06 E-value=3.8e+02 Score=26.57 Aligned_cols=91 Identities=20% Similarity=0.206 Sum_probs=43.2
Q ss_pred cccHHHHHHHh----hCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE--CCCC-
Q 044572 308 GAGVIGLSLAA----ARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV--DPPR- 380 (457)
Q Consensus 308 G~G~~sl~lA~----~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~--DPPR- 380 (457)
|+|..|-.+|. ..-+.+++.+|++++..+--..-++........++.+..+|-. .....|+||+ -.||
T Consensus 3 GaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~-----~~~daDivVitag~~rk 77 (299)
T TIGR01771 3 GAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYS-----DCKDADLVVITAGAPQK 77 (299)
T ss_pred CcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHH-----HHCCCCEEEECCCCCCC
Confidence 45555444443 2235789999998764332221111110001123444433311 2356788887 2233
Q ss_pred CCccH------------HHHHHHHhcCCCCcEEEEe
Q 044572 381 KGLDS------------SLVHALQSIGSAERKAKSL 404 (457)
Q Consensus 381 ~Gl~~------------~v~~~l~~~~~~~~ivyvs 404 (457)
.|.++ ++.+.+.+.. +..++.+-
T Consensus 78 ~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vivv 112 (299)
T TIGR01771 78 PGETRLELVGRNVRIMKSIVPEVVKSG-FDGIFLVA 112 (299)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEe
Confidence 34433 3556666665 44444443
No 487
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=23.98 E-value=6.7e+02 Score=24.29 Aligned_cols=55 Identities=13% Similarity=0.013 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhhCCC--CCeEEEEcccccHHHHHHHhhCCCCEEEEEeCCHHHHHHH
Q 044572 283 RAFDILLRKLQKYVPY--GASVTDLYAGAGVIGLSLAAARKCRSVKCVEINKESQLSF 338 (457)
Q Consensus 283 ~~~~~l~~~i~~~~~~--~~~vLDl~cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A 338 (457)
...++-.+.+..|+++ .+++|=+|++--+..++-+....+ +|+-||+.|...+..
T Consensus 24 ~I~ekKa~ai~~~le~~~~k~~lI~G~YltG~~iA~~L~~~~-eV~lvDI~p~lk~ll 80 (252)
T PF06690_consen 24 EIAEKKANAIKYWLEGEEFKQALIFGAYLTGNFIASALSKKC-EVTLVDIHPHLKELL 80 (252)
T ss_pred HHHHHHHHHHHHHhcccccceEEEEEEEeehHHHHHHhccCc-eEEEEeCcHHHHHHh
Confidence 4455555666677753 237777777532222222222335 999999999987665
No 488
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=23.95 E-value=3.6e+02 Score=21.14 Aligned_cols=75 Identities=15% Similarity=0.142 Sum_probs=45.9
Q ss_pred EEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc-cCCccEEEECC--CCCCccHHHHHHHHhcCCCCcEE
Q 044572 325 VKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW-LVGSDVLVVDP--PRKGLDSSLVHALQSIGSAERKA 401 (457)
Q Consensus 325 V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~-~~~~D~vi~DP--PR~Gl~~~v~~~l~~~~~~~~iv 401 (457)
|.-||-++...+..+.-++.. +...+. ...+..+.+... ...+|+|++|= |. +-.-++++.|+...+...++
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~---~~~~v~-~~~~~~~~~~~~~~~~~d~iiid~~~~~-~~~~~~~~~i~~~~~~~~ii 75 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERA---GYEEVT-TASSGEEALELLKKHPPDLIIIDLELPD-GDGLELLEQIRQINPSIPII 75 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHT---TEEEEE-EESSHHHHHHHHHHSTESEEEEESSSSS-SBHHHHHHHHHHHTTTSEEE
T ss_pred cEEEECCHHHHHHHHHHHHhC---CCCEEE-EECCHHHHHHHhcccCceEEEEEeeecc-ccccccccccccccccccEE
Confidence 567899999988888877752 111222 233333322211 24699999993 32 22236888888877667777
Q ss_pred EEe
Q 044572 402 KSL 404 (457)
Q Consensus 402 yvs 404 (457)
.++
T Consensus 76 ~~t 78 (112)
T PF00072_consen 76 VVT 78 (112)
T ss_dssp EEE
T ss_pred Eec
Confidence 776
No 489
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=23.94 E-value=4.3e+02 Score=22.57 Aligned_cols=74 Identities=19% Similarity=0.118 Sum_probs=43.1
Q ss_pred CCCeEEEEccc-ccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEEE
Q 044572 298 YGASVTDLYAG-AGVIGLSLAAARKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLVV 376 (457)
Q Consensus 298 ~~~~vLDl~cG-~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi~ 376 (457)
.+.++|=+|+| +|...+......|+++|+-+..+.+-.+...+.... .+++++..+ + +......+|+||.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~------~~~~~~~~~--~-~~~~~~~~DivI~ 81 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGG------VNIEAIPLE--D-LEEALQEADIVIN 81 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTG------CSEEEEEGG--G-HCHHHHTESEEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCc------cccceeeHH--H-HHHHHhhCCeEEE
Confidence 57889988874 333222222335788999999997755544443321 345555433 2 1122357999998
Q ss_pred CCCC
Q 044572 377 DPPR 380 (457)
Q Consensus 377 DPPR 380 (457)
=.|-
T Consensus 82 aT~~ 85 (135)
T PF01488_consen 82 ATPS 85 (135)
T ss_dssp -SST
T ss_pred ecCC
Confidence 7763
No 490
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=23.94 E-value=5.5e+02 Score=23.31 Aligned_cols=78 Identities=12% Similarity=0.031 Sum_probs=43.7
Q ss_pred EEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccc-cCCccEEEECCCCCC----ccHHHHHHHHhcCCCC
Q 044572 324 SVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSW-LVGSDVLVVDPPRKG----LDSSLVHALQSIGSAE 398 (457)
Q Consensus 324 ~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~-~~~~D~vi~DPPR~G----l~~~v~~~l~~~~~~~ 398 (457)
+|.-||-++......+.-++.. . ...+-....+..+.+... ...+|+|++|-.-.+ -.-++++.++...+.-
T Consensus 5 ~Ilivdd~~~~~~~l~~~L~~~--~-~~~~v~~~~~~~~~~~~~~~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~~ 81 (216)
T PRK10840 5 NVIIADDHPIVLFGIRKSLEQI--E-WVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSL 81 (216)
T ss_pred EEEEECCcHHHHHHHHHHHhcC--C-CCEEEEEECCHHHHHHHHHhCCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCCC
Confidence 6889999998877777666431 1 111122233333332221 246899999954322 1235777777654444
Q ss_pred cEEEEe
Q 044572 399 RKAKSL 404 (457)
Q Consensus 399 ~ivyvs 404 (457)
.++.++
T Consensus 82 ~iIvls 87 (216)
T PRK10840 82 SIIVLT 87 (216)
T ss_pred cEEEEE
Confidence 666665
No 491
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=23.86 E-value=1.9e+02 Score=28.84 Aligned_cols=71 Identities=13% Similarity=0.127 Sum_probs=39.3
Q ss_pred EEEEcccccHHHHHHHh---hCCCCEEEEEeCCHHH-------------------HHHHHHHHhhCCCCCCCcEEEEEcc
Q 044572 302 VTDLYAGAGVIGLSLAA---ARKCRSVKCVEINKES-------------------QLSFEKTVSRLPKSVDGNISWHNAD 359 (457)
Q Consensus 302 vLDl~cG~G~~sl~lA~---~~~~~~V~gVE~~~~a-------------------v~~A~~Na~~~~~~~~~nv~~~~~d 359 (457)
||=+|| |++|-++++ +.|.++++-||.+.-- .+.|.+.++.. |-.-+++.+..+
T Consensus 2 VlVVGa--GGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~--np~v~I~~~~~~ 77 (291)
T cd01488 2 ILVIGA--GGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDR--VPGVNVTPHFGK 77 (291)
T ss_pred EEEECC--CHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHH--CCCCEEEEEecc
Confidence 444554 444444333 3678899999865322 22334444432 223456777777
Q ss_pred CCcCcccccCCccEEEE
Q 044572 360 NSIEPLSWLVGSDVLVV 376 (457)
Q Consensus 360 ~~~~~~~~~~~~D~vi~ 376 (457)
+.+....+...||+||.
T Consensus 78 i~~~~~~f~~~fdvVi~ 94 (291)
T cd01488 78 IQDKDEEFYRQFNIIIC 94 (291)
T ss_pred cCchhHHHhcCCCEEEE
Confidence 66543344568999886
No 492
>PRK07478 short chain dehydrogenase; Provisional
Probab=23.78 E-value=3.9e+02 Score=24.94 Aligned_cols=75 Identities=13% Similarity=0.051 Sum_probs=48.5
Q ss_pred CCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCc------cc---
Q 044572 299 GASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEP------LS--- 366 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~------~~--- 366 (457)
++++| +-.|+|.+|..+++. .| .+|+.++.+++.++.+...++.. ..++.++..|+.+.. .+
T Consensus 6 ~k~~l-ItGas~giG~~ia~~l~~~G-~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (254)
T PRK07478 6 GKVAI-ITGASSGIGRAAAKLFAREG-AKVVVGARRQAELDQLVAEIRAE----GGEAVALAGDVRDEAYAKALVALAVE 79 (254)
T ss_pred CCEEE-EeCCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 45666 556677777777653 33 37999999988877766655442 135788888987531 11
Q ss_pred ccCCccEEEECCC
Q 044572 367 WLVGSDVLVVDPP 379 (457)
Q Consensus 367 ~~~~~D~vi~DPP 379 (457)
..+..|++|.+..
T Consensus 80 ~~~~id~li~~ag 92 (254)
T PRK07478 80 RFGGLDIAFNNAG 92 (254)
T ss_pred hcCCCCEEEECCC
Confidence 1246798887653
No 493
>PRK07825 short chain dehydrogenase; Provisional
Probab=23.77 E-value=6.2e+02 Score=23.86 Aligned_cols=71 Identities=24% Similarity=0.170 Sum_probs=43.2
Q ss_pred CCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc------c---
Q 044572 299 GASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL------S--- 366 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~------~--- 366 (457)
+.++| +-.|+|.+|..+++. .| .+|+.++.+++.++.+.+.+ .++.++..|+.+... .
T Consensus 5 ~~~il-VtGasggiG~~la~~l~~~G-~~v~~~~r~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (273)
T PRK07825 5 GKVVA-ITGGARGIGLATARALAALG-ARVAIGDLDEALAKETAAEL--------GLVVGGPLDVTDPASFAAFLDAVEA 74 (273)
T ss_pred CCEEE-EeCCCchHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHh--------ccceEEEccCCCHHHHHHHHHHHHH
Confidence 45666 455567777776642 23 37999999987765443322 146788888875311 1
Q ss_pred ccCCccEEEECCC
Q 044572 367 WLVGSDVLVVDPP 379 (457)
Q Consensus 367 ~~~~~D~vi~DPP 379 (457)
.....|++|.+.-
T Consensus 75 ~~~~id~li~~ag 87 (273)
T PRK07825 75 DLGPIDVLVNNAG 87 (273)
T ss_pred HcCCCCEEEECCC
Confidence 1145788887653
No 494
>PRK06484 short chain dehydrogenase; Validated
Probab=23.65 E-value=8.1e+02 Score=25.83 Aligned_cols=72 Identities=21% Similarity=0.114 Sum_probs=43.5
Q ss_pred CCCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc------cc-
Q 044572 298 YGASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL------SW- 367 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~------~~- 367 (457)
.++++| +-.|++.+|..+|+. .| .+|+.++.+.+.++.+.+.+ ..++.++..|+.+.-. ..
T Consensus 4 ~~k~~l-ITGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~~ 74 (520)
T PRK06484 4 QSRVVL-VTGAAGGIGRAACQRFARAG-DQVVVADRNVERARERADSL-------GPDHHALAMDVSDEAQIREGFEQLH 74 (520)
T ss_pred CCeEEE-EECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHh-------CCceeEEEeccCCHHHHHHHHHHHH
Confidence 355666 444555566666643 23 48999999988776544322 1356788888875311 11
Q ss_pred --cCCccEEEECC
Q 044572 368 --LVGSDVLVVDP 378 (457)
Q Consensus 368 --~~~~D~vi~DP 378 (457)
.+..|++|.+.
T Consensus 75 ~~~g~iD~li~na 87 (520)
T PRK06484 75 REFGRIDVLVNNA 87 (520)
T ss_pred HHhCCCCEEEECC
Confidence 14689998875
No 495
>PRK07063 short chain dehydrogenase; Provisional
Probab=23.55 E-value=4.4e+02 Score=24.65 Aligned_cols=76 Identities=18% Similarity=0.097 Sum_probs=47.7
Q ss_pred CCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcc--cc------
Q 044572 299 GASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSIEPL--SW------ 367 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~--~~------ 367 (457)
++++|=.| |+|.+|..+++. .| .+|+.++.+++.++...+.++.. +...++.++..|+.+... ..
T Consensus 7 ~k~vlVtG-as~gIG~~~a~~l~~~G-~~vv~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (260)
T PRK07063 7 GKVALVTG-AAQGIGAAIARAFAREG-AAVALADLDAALAERAAAAIARD--VAGARVLAVPADVTDAASVAAAVAAAEE 82 (260)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhc--cCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 56777555 456666666542 23 47999999988877766655431 122468889999875311 11
Q ss_pred -cCCccEEEECC
Q 044572 368 -LVGSDVLVVDP 378 (457)
Q Consensus 368 -~~~~D~vi~DP 378 (457)
.+..|++|.+.
T Consensus 83 ~~g~id~li~~a 94 (260)
T PRK07063 83 AFGPLDVLVNNA 94 (260)
T ss_pred HhCCCcEEEECC
Confidence 14678888764
No 496
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=23.12 E-value=1.6e+02 Score=29.04 Aligned_cols=41 Identities=10% Similarity=0.059 Sum_probs=31.0
Q ss_pred CeEEEEc--ccccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH
Q 044572 300 ASVTDLY--AGAGVIGLSLAAARKCRSVKCVEINKESQLSFEK 340 (457)
Q Consensus 300 ~~vLDl~--cG~G~~sl~lA~~~~~~~V~gVE~~~~av~~A~~ 340 (457)
++||=.+ .|.|.+++.+|+..|+++|++++.+++-.+.+++
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~ 198 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKS 198 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 7777555 4677788888887776689999999887766654
No 497
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=22.82 E-value=8.6e+02 Score=25.16 Aligned_cols=112 Identities=17% Similarity=0.108 Sum_probs=58.6
Q ss_pred CCeEEEEcccccHHHHHHHhh--CCCCEEEEEeCCH-HHHHHHHHHHhhCCCCCCCcEEEEEccCCcCcccccCCccEEE
Q 044572 299 GASVTDLYAGAGVIGLSLAAA--RKCRSVKCVEINK-ESQLSFEKTVSRLPKSVDGNISWHNADNSIEPLSWLVGSDVLV 375 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~--~~~~~V~gVE~~~-~av~~A~~Na~~~~~~~~~nv~~~~~d~~~~~~~~~~~~D~vi 375 (457)
+++|+=+|+|. +|+.+|.. ....+|+++|.+. +.++.....+.. ..++++.+|..+. ..+.+|+||
T Consensus 5 ~k~v~iiG~g~--~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~---~~~~~d~vv 73 (450)
T PRK14106 5 GKKVLVVGAGV--SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGE------LGIELVLGEYPEE---FLEGVDLVV 73 (450)
T ss_pred CCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHh------cCCEEEeCCcchh---HhhcCCEEE
Confidence 56676555444 66655542 1124899999985 334332222332 1346777776542 235689999
Q ss_pred ECCCCCCccHHHH-------------HHHHhcCCCCcEEEEeccCCCCCchhchhhHHHHHHHh
Q 044572 376 VDPPRKGLDSSLV-------------HALQSIGSAERKAKSLSESSSSMVKEEKRPWILRAKEA 426 (457)
Q Consensus 376 ~DPPR~Gl~~~v~-------------~~l~~~~~~~~ivyvs~~~~~c~~~~~~~~~~~~~~~~ 426 (457)
..+--.-..+.+. +.+..... ..+|-|++ .++++....++..+...
T Consensus 74 ~~~g~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~-~~vI~ITG----S~GKTTt~~~l~~iL~~ 132 (450)
T PRK14106 74 VSPGVPLDSPPVVQAHKKGIEVIGEVELAYRFSK-APIVAITG----TNGKTTTTTLLGEIFKN 132 (450)
T ss_pred ECCCCCCCCHHHHHHHHCCCcEEeHHHHHHhhcC-CCEEEEeC----CCchHHHHHHHHHHHHH
Confidence 8764221112111 12222222 46777763 46777766666554443
No 498
>PRK12743 oxidoreductase; Provisional
Probab=22.73 E-value=4.9e+02 Score=24.36 Aligned_cols=75 Identities=17% Similarity=0.031 Sum_probs=0.0
Q ss_pred CCeEEEEcccccHHHHHHHhh---CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCc---------Cccc
Q 044572 299 GASVTDLYAGAGVIGLSLAAA---RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSI---------EPLS 366 (457)
Q Consensus 299 ~~~vLDl~cG~G~~sl~lA~~---~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~---------~~~~ 366 (457)
++++| +-.|+|.+|..+++. .|+.-++....+.+..+.+...++..+ .++.++..|+.+ ....
T Consensus 2 ~k~vl-ItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~ 76 (256)
T PRK12743 2 AQVAI-VTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHG----VRAEIRQLDLSDLPEGAQALDKLIQ 76 (256)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcC----CceEEEEccCCCHHHHHHHHHHHHH
Q ss_pred ccCCccEEEECC
Q 044572 367 WLVGSDVLVVDP 378 (457)
Q Consensus 367 ~~~~~D~vi~DP 378 (457)
.....|++|.+.
T Consensus 77 ~~~~id~li~~a 88 (256)
T PRK12743 77 RLGRIDVLVNNA 88 (256)
T ss_pred HcCCCCEEEECC
No 499
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.59 E-value=4.4e+02 Score=24.16 Aligned_cols=59 Identities=24% Similarity=0.246 Sum_probs=0.0
Q ss_pred CCCeEEEEcccccHHHHHHHhh--CCCCEEEEEeCCHHHHHHHHHHHhhCCCCCCCcEEEEEccCCc
Q 044572 298 YGASVTDLYAGAGVIGLSLAAA--RKCRSVKCVEINKESQLSFEKTVSRLPKSVDGNISWHNADNSI 362 (457)
Q Consensus 298 ~~~~vLDl~cG~G~~sl~lA~~--~~~~~V~gVE~~~~av~~A~~Na~~~~~~~~~nv~~~~~d~~~ 362 (457)
.+++|| +..|+|.+|..+++. ....+|++++.+++....+...+.. ..+++++.+|+.+
T Consensus 4 ~~~~vl-ItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~ 64 (238)
T PRK05786 4 KGKKVA-IIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSK-----YGNIHYVVGDVSS 64 (238)
T ss_pred CCcEEE-EECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----cCCeEEEECCCCC
No 500
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=22.53 E-value=1.6e+02 Score=30.28 Aligned_cols=45 Identities=13% Similarity=0.173 Sum_probs=0.0
Q ss_pred CCCCCeEEEEc--ccccHHHHHHHhhC--CCCEEEEEeCCHHHHHHHHH
Q 044572 296 VPYGASVTDLY--AGAGVIGLSLAAAR--KCRSVKCVEINKESQLSFEK 340 (457)
Q Consensus 296 ~~~~~~vLDl~--cG~G~~sl~lA~~~--~~~~V~gVE~~~~av~~A~~ 340 (457)
+..|++|+=++ .+.|.+++.+|+.. ++.+|+++|.+++-++.|++
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~ 221 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQR 221 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHH
Done!