BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044575
(454 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
Length = 461
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 99/367 (26%), Positives = 172/367 (46%), Gaps = 32/367 (8%)
Query: 10 AQSKNVCVIGAGPSGLV------AARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTE-- 61
+ + + ++GAGPSG+ +A+E E +V E+ D GGQW Y T E
Sbjct: 5 SMATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENG 64
Query: 62 --VHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREM 119
VHSS+Y L + P+E + + D+ F G+ + +P + LW Y+K ++ G+R+
Sbjct: 65 EPVHSSMYRYLWSSGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKY 124
Query: 120 IRFNTRVEYVGMLDCGELIIGNDLIXXXXXXXXXXXXXXXXXXXXXXXXXTGHYSYPRLP 179
IRFNT V +V D TGH+S P +P
Sbjct: 125 IRFNTAVRHVE--------FNEDSQTFTVTVQDHTTDTIYSAAFDYVVCCTGHFSTPYVP 176
Query: 180 SIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEV-AKEVHLSAKSL 238
+G +K+ + +H+H +R F+++ V++VG+S S +DI + + AK++ ++
Sbjct: 177 EFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTA 236
Query: 239 NISEGLSKVISKHNNLHLHPQIDCLREDGR-VTFVDGCWVTADTILYCTGYSYSFPFLDT 297
+ + + NL +R D F DG D I+ CTGY + FPFL+
Sbjct: 237 PMGYKWPENWDERPNL--------VRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLN- 287
Query: 298 KGIVVVDDDRVGP--LYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRT 355
+ +V ++R+ P LY+ P ++G+ + F F++QA + ++ G+
Sbjct: 288 DDLRLVTNNRLWPLNLYKGVVWED-NPKFFYIGMQDQWYSFNMFDAQAWYARDVIMGRLP 346
Query: 356 LPSWDQM 362
LPS ++M
Sbjct: 347 LPSKEEM 353
>pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQB|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2XLT|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLU|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
Length = 461
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 99/367 (26%), Positives = 171/367 (46%), Gaps = 32/367 (8%)
Query: 10 AQSKNVCVIGAGPSGLV------AARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTE-- 61
+ + + ++GAGPSG+ +A+E E +V E+ D GGQW Y T E
Sbjct: 5 SMATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENG 64
Query: 62 --VHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREM 119
VHSS+Y L P+E + + D+ F G+ + +P + LW Y+K ++ G+R+
Sbjct: 65 EPVHSSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKY 124
Query: 120 IRFNTRVEYVGMLDCGELIIGNDLIXXXXXXXXXXXXXXXXXXXXXXXXXTGHYSYPRLP 179
IRFNT V +V D TGH+S P +P
Sbjct: 125 IRFNTAVRHVE--------FNEDSQTFTVTVQDHTTDTIYSAAFDYVVCCTGHFSTPYVP 176
Query: 180 SIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEV-AKEVHLSAKSL 238
+G +K+ + +H+H +R F+++ V++VG+S S +DI + + AK++ ++
Sbjct: 177 EFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTA 236
Query: 239 NISEGLSKVISKHNNLHLHPQIDCLREDGR-VTFVDGCWVTADTILYCTGYSYSFPFLDT 297
+ + + NL +R D F DG D I+ CTGY + FPFL+
Sbjct: 237 PMGYKWPENWDERPNL--------VRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLN- 287
Query: 298 KGIVVVDDDRVGP--LYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRT 355
+ +V ++R+ P LY+ P ++G+ + F F++QA + ++ G+
Sbjct: 288 DDLRLVTNNRLWPLNLYKGVVWED-NPKFFYIGMQDQWYSFNMFDAQAWYARDVIMGRLP 346
Query: 356 LPSWDQM 362
LPS ++M
Sbjct: 347 LPSKEEM 353
>pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
Length = 461
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 99/367 (26%), Positives = 171/367 (46%), Gaps = 32/367 (8%)
Query: 10 AQSKNVCVIGAGPSGLV------AARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTE-- 61
+ + + ++GAGPSG+ +A+E E +V E+ D GGQW Y T E
Sbjct: 5 SMATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENG 64
Query: 62 --VHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREM 119
VHSS+Y L P+E + + D+ F G+ + +P + LW Y+K ++ G+R+
Sbjct: 65 EPVHSSMYRYLWSKGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKY 124
Query: 120 IRFNTRVEYVGMLDCGELIIGNDLIXXXXXXXXXXXXXXXXXXXXXXXXXTGHYSYPRLP 179
IRFNT V +V D TGH+S P +P
Sbjct: 125 IRFNTAVRHVE--------FNEDSQTFTVTVQDHTTDTIYSAAFDYVVCCTGHFSTPYVP 176
Query: 180 SIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEV-AKEVHLSAKSL 238
+G +K+ + +H+H +R F+++ V++VG+S S +DI + + AK++ ++
Sbjct: 177 EFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTA 236
Query: 239 NISEGLSKVISKHNNLHLHPQIDCLREDGR-VTFVDGCWVTADTILYCTGYSYSFPFLDT 297
+ + + NL +R D F DG D I+ CTGY + FPFL+
Sbjct: 237 PMGYKWPENWDERPNL--------VRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLN- 287
Query: 298 KGIVVVDDDRVGP--LYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRT 355
+ +V ++R+ P LY+ P ++G+ + F F++QA + ++ G+
Sbjct: 288 DDLRLVTNNRLWPLNLYKGVVWED-NPKFFYIGMQDQWYSFNMFDAQAWYARDVIMGRLP 346
Query: 356 LPSWDQM 362
LPS ++M
Sbjct: 347 LPSKEEM 353
>pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVH|A Chain A, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|B Chain B, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|C Chain C, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
Length = 464
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 99/365 (27%), Positives = 170/365 (46%), Gaps = 32/365 (8%)
Query: 12 SKNVCVIGAGPSGLV------AARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTE---- 61
+ + ++GAGPSG+ +A+E E +V E+ D GGQW Y T E
Sbjct: 2 ATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEP 61
Query: 62 VHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIR 121
VHSS+Y L P+E + + D+ F G+ + +P + LW Y+K ++ G+R+ IR
Sbjct: 62 VHSSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIR 121
Query: 122 FNTRVEYVGMLDCGELIIGNDLIXXXXXXXXXXXXXXXXXXXXXXXXXTGHYSYPRLPSI 181
FNT V +V D TGH+S P +P
Sbjct: 122 FNTAVRHVE--------FNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCTGHFSTPYVPEF 173
Query: 182 KGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEV-AKEVHLSAKSLNI 240
+G +K+ + +H+H +R F+++ V++VG+S S +DI + + AK++ ++ +
Sbjct: 174 EGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPM 233
Query: 241 SEGLSKVISKHNNLHLHPQIDCLREDGR-VTFVDGCWVTADTILYCTGYSYSFPFLDTKG 299
+ + NL +R D F DG D I+ CTGY + FPFL+
Sbjct: 234 GYKWPENWDERPNL--------VRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLN-DD 284
Query: 300 IVVVDDDRVGP--LYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRTLP 357
+ +V ++R+ P LY+ P ++G+ + F F++QA + ++ G+ LP
Sbjct: 285 LRLVTNNRLWPLNLYKGVVWED-NPKFFYIGMQDQWYSFNMFDAQAWYARDVIMGRLPLP 343
Query: 358 SWDQM 362
S ++M
Sbjct: 344 SKEEM 348
>pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
Length = 461
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 99/367 (26%), Positives = 171/367 (46%), Gaps = 32/367 (8%)
Query: 10 AQSKNVCVIGAGPSGLV------AARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTE-- 61
+ + + ++GAGPSG+ +A+E E +V E+ D GGQW Y T E
Sbjct: 5 SMATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENG 64
Query: 62 --VHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREM 119
VHSS+Y L P+E + + D+ F G+ + +P + LW Y+K ++ G+R+
Sbjct: 65 EPVHSSMYRYLWSDGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKY 124
Query: 120 IRFNTRVEYVGMLDCGELIIGNDLIXXXXXXXXXXXXXXXXXXXXXXXXXTGHYSYPRLP 179
IRFNT V +V D TGH+S P +P
Sbjct: 125 IRFNTAVRHVE--------FNEDSQTFTVTVQDHTTDTIYSAAFDYVVCCTGHFSTPYVP 176
Query: 180 SIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEV-AKEVHLSAKSL 238
+G +K+ + +H+H +R F+++ V++VG+S S +DI + + AK++ ++
Sbjct: 177 EFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTA 236
Query: 239 NISEGLSKVISKHNNLHLHPQIDCLREDGR-VTFVDGCWVTADTILYCTGYSYSFPFLDT 297
+ + + NL +R D F DG D I+ CTGY + FPFL+
Sbjct: 237 PMGYKWPENWDERPNL--------VRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLN- 287
Query: 298 KGIVVVDDDRVGP--LYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRT 355
+ +V ++R+ P LY+ P ++G+ + F F++QA + ++ G+
Sbjct: 288 DDLRLVTNNRLWPLNLYKGVVWED-NPKFFYIGMQDQWYSFNMFDAQAWYARDVIMGRLP 346
Query: 356 LPSWDQM 362
LPS ++M
Sbjct: 347 LPSKEEM 353
>pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVJ|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
Length = 464
Score = 132 bits (332), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 99/365 (27%), Positives = 170/365 (46%), Gaps = 32/365 (8%)
Query: 12 SKNVCVIGAGPSGLV------AARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTE---- 61
+ + ++GAGPSG+ +A+E E +V E+ D GGQW Y T E
Sbjct: 2 ATRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEP 61
Query: 62 VHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIR 121
VHSS+Y L P+E + + D+ F G+ + +P + LW Y+K ++ G+R+ IR
Sbjct: 62 VHSSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIR 121
Query: 122 FNTRVEYVGMLDCGELIIGNDLIXXXXXXXXXXXXXXXXXXXXXXXXXTGHYSYPRLPSI 181
FNT V +V D TGH+S P +P
Sbjct: 122 FNTAVRHVE--------FNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCTGHFSTPYVPEF 173
Query: 182 KGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEV-AKEVHLSAKSLNI 240
+G +K+ + +H+H +R F+++ V++VG+S S +DI + + AK++ ++ +
Sbjct: 174 EGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSSSAEDIGSQCYKYGAKKLISCYRTAPM 233
Query: 241 SEGLSKVISKHNNLHLHPQIDCLREDGR-VTFVDGCWVTADTILYCTGYSYSFPFLDTKG 299
+ + NL +R D F DG D I+ CTGY + FPFL+
Sbjct: 234 GYKWPENWDERPNL--------VRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLN-DD 284
Query: 300 IVVVDDDRVGP--LYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRTLP 357
+ +V ++R+ P LY+ P ++G+ + F F++QA + ++ G+ LP
Sbjct: 285 LRLVTNNRLWPLNLYKGVVWED-NPKFFYIGMQDQWYSFNMFDAQAWYARDVIMGRLPLP 343
Query: 358 SWDQM 362
S ++M
Sbjct: 344 SKEEM 348
>pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
Length = 464
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 97/360 (26%), Positives = 160/360 (44%), Gaps = 30/360 (8%)
Query: 12 SKNVCVIGAGPSGLV------AARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTE---- 61
+ + ++GAGPSG +A+E E +V E+ D GGQW Y T E
Sbjct: 2 ATRIAILGAGPSGXAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEP 61
Query: 62 VHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIR 121
VHSS Y L P+E + + D+ F G+ + +P + LW Y+K ++ G+R+ IR
Sbjct: 62 VHSSXYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIR 121
Query: 122 FNTRVEYVGMLDCGELIIGNDLIXXXXXXXXXXXXXXXXXXXXXXXXXTGHYSYPRLPSI 181
FNT V +V D TGH+S P +P
Sbjct: 122 FNTAVRHVEF--------NEDSQTFTVTVQDHTTDTIYSEEFDYVVCCTGHFSTPYVPEF 173
Query: 182 KGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNIS 241
+G +K+ + +H+H +R F+++ V++VG+S S +DI + + + K ++
Sbjct: 174 EGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYG-----AKKLISCY 228
Query: 242 EGLSKVISKHNNLHLHPQIDCLREDGR-VTFVDGCWVTADTILYCTGYSYSFPFLDTKGI 300
N P + +R D F DG D I+ CTGY + FPFL+ +
Sbjct: 229 RTAPXGYKWPENWDERPNL--VRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLN-DDL 285
Query: 301 VVVDDDRVGP--LYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRTLPS 358
+V ++R+ P LY+ P ++G + F F++QA + ++ G+ LPS
Sbjct: 286 RLVTNNRLWPLNLYKGVVWED-NPKFFYIGXQDQWYSFNXFDAQAWYARDVIXGRLPLPS 344
>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
pdb|1VQW|B Chain B, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
Length = 457
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 119/434 (27%), Positives = 188/434 (43%), Gaps = 65/434 (14%)
Query: 13 KNVCVIGAGPSGLVAARELRKEGH--RVVVLEQNHDVGGQWLYD---------PNTD--- 58
+ + +IGAGPSGLV A+ L E +V + E+ GG W Y P+T+
Sbjct: 9 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPIL 68
Query: 59 QTE----------VHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLK 108
TE S +Y L+ +P E+ GY D F +FP + Y +
Sbjct: 69 TTEPIVGPAALPVYPSPLYRDLQTNTPIELXGYCDQSF----KPQTLQFPHRHTIQEYQR 124
Query: 109 DFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIXXXXXXXXXXXXXXXXXXXXXXXX 168
+ Q L I+ T V + D ++
Sbjct: 125 IYAQP--LLPFIKLATDVLDIEKKDGSWVV---------TYKGTKAGSPISKDIFDAVSI 173
Query: 169 XTGHYSYPRLPSIKGMDKWKR----KQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMEL 224
GHY P +P+IKG+D++ + +HS ++R PE F E V+VVG + S D+ L
Sbjct: 174 CNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHL 233
Query: 225 VEVAKEVHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTA--DTI 282
VAK H +SL L ++ +L P+I R ++ G V + D +
Sbjct: 234 TPVAK--HPIYQSL-----LGGGDIQNESLQQVPEITKFDPTTREIYLKGGKVLSNIDRV 286
Query: 283 LYCTGYSYSFPF-----LDTKGIVVVDD-DRVGPLYEHTF--PPSLAPSLSFVGIPRKLI 334
+YCTGY YS PF L + ++DD V +Y+H F P P+L+FVG+ ++
Sbjct: 287 IYCTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIP---DPTLAFVGLALHVV 343
Query: 335 GFPFFESQAKWIAQLLSGKRTLPSWDQMMQSVKEFYHSRDVAGIPKHNTHDIANFEYCDR 394
FP ++QA ++A++ SG+ LPS ++ ++ E S A H+ + Y ++
Sbjct: 344 PFPTSQAQAAFLARVWSGRLKLPSKEEQLKWQDELXFSLSGANNXYHSLDYPKDATYINK 403
Query: 395 YAD--QIGFPHLEE 406
D + P LEE
Sbjct: 404 LHDWCKQATPVLEE 417
>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GV8|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GVC|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|D Chain D, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|E Chain E, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
Length = 447
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 119/434 (27%), Positives = 188/434 (43%), Gaps = 65/434 (14%)
Query: 13 KNVCVIGAGPSGLVAARELRKEGH--RVVVLEQNHDVGGQWLYD---------PNTD--- 58
+ + +IGAGPSGLV A+ L E +V + E+ GG W Y P+T+
Sbjct: 7 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPIL 66
Query: 59 QTE----------VHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLK 108
TE S +Y L+ +P E+ GY D F +FP + Y +
Sbjct: 67 TTEPIVGPAALPVYPSPLYRDLQTNTPIELXGYCDQSF----KPQTLQFPHRHTIQEYQR 122
Query: 109 DFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIXXXXXXXXXXXXXXXXXXXXXXXX 168
+ Q L I+ T V + D ++
Sbjct: 123 IYAQP--LLPFIKLATDVLDIEKKDGSWVV---------TYKGTKAGSPISKDIFDAVSI 171
Query: 169 XTGHYSYPRLPSIKGMDKWKR----KQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMEL 224
GHY P +P+IKG+D++ + +HS ++R PE F E V+VVG + S D+ L
Sbjct: 172 CNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHL 231
Query: 225 VEVAKEVHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTA--DTI 282
VAK H +SL L ++ +L P+I R ++ G V + D +
Sbjct: 232 TPVAK--HPIYQSL-----LGGGDIQNESLQQVPEITKFDPTTREIYLKGGKVLSNIDRV 284
Query: 283 LYCTGYSYSFPF-----LDTKGIVVVDD-DRVGPLYEHTF--PPSLAPSLSFVGIPRKLI 334
+YCTGY YS PF L + ++DD V +Y+H F P P+L+FVG+ ++
Sbjct: 285 IYCTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIP---DPTLAFVGLALHVV 341
Query: 335 GFPFFESQAKWIAQLLSGKRTLPSWDQMMQSVKEFYHSRDVAGIPKHNTHDIANFEYCDR 394
FP ++QA ++A++ SG+ LPS ++ ++ E S A H+ + Y ++
Sbjct: 342 PFPTSQAQAAFLARVWSGRLKLPSKEEQLKWQDELXFSLSGANNXYHSLDYPKDATYINK 401
Query: 395 YAD--QIGFPHLEE 406
D + P LEE
Sbjct: 402 LHDWCKQATPVLEE 415
>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOV|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOX|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOX|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOY|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOY|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOZ|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UOZ|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UP4|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP4|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP5|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
pdb|3UP5|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
Length = 545
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 92/236 (38%), Gaps = 37/236 (15%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLT 73
+ VIGAG +G+ A + + G +V+ +E DVGG W ++ Y RL
Sbjct: 11 DAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWN-----------RYPGCRLD 59
Query: 74 SPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRV---EYVG 130
+ GY ++ + F E+ Y+ +R+ RFNTRV YV
Sbjct: 60 TESYAYGYFALKGIIPEWEWSENFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVE 119
Query: 131 MLDCGELIIGNDLIXXXXXXXXXXXXXXXXXXXXXXXXXTGHYSYPRLPSIKGMDKWKRK 190
E+ + N+ + TG S R+P IKG+D +K +
Sbjct: 120 NDRLWEVTLDNEEV----------------VTCRFLISATGPLSASRMPDIKGIDSFKGE 163
Query: 191 QMHSHIYRVPEP-------FRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN 239
HS + F + V V+G +G I E AKE+++ ++ N
Sbjct: 164 SFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPN 219
>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
pdb|4A9W|B Chain B, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
Length = 357
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 85/223 (38%), Gaps = 33/223 (14%)
Query: 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLR 71
S +V VIG G SGL A LR+ G V+L+ GG W + + SL
Sbjct: 3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQH------------AWHSLH 50
Query: 72 LTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGM 131
L SP +P +G +P E+ YL + Q++ L ++R RV+ V
Sbjct: 51 LFSPAGWSSIPGWPMPASQG----PYPARAEVLAYLAQYEQKYAL-PVLR-PIRVQRVSH 104
Query: 132 LDCGELIIGNDLIXXXXXXXXXXXXXXXXXXXXXXXXXTGHYSYPRLPSIKGMDKWKRKQ 191
++ D TG + P +G++ + Q
Sbjct: 105 FGERLRVVARD---------------GRQWLARAVISATGTWGEAYTPEYQGLESFAGIQ 149
Query: 192 MHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLS 234
+HS Y P PF V ++G SG I E+ VA+ ++
Sbjct: 150 LHSAHYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVAETTWIT 192
>pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Asp66ala
Mutant In Complex With Nadp And Mes
Length = 542
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 93/245 (37%), Gaps = 45/245 (18%)
Query: 4 DDHQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVH 63
D +Q + +V V+GAG SGL A LR+ G V V+E DVGG W ++
Sbjct: 8 DSRRQPPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWN--------- 58
Query: 64 SSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFN 123
Y R Y+ VL++ R+ E+ Y+ +F LR I F+
Sbjct: 59 --RYPGARCAIESIEYCYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFH 116
Query: 124 TRVEYVGMLDC----------GELIIGNDLIXXXXXXXXXXXXXXXXXXXXXXXXXTGHY 173
T V + G+ I LI +G
Sbjct: 117 TTVTAAAFDEATNTWTVDTNHGDRIRARYLI-----------------------MASGQL 153
Query: 174 SYPRLPSIKGMDKWKRKQMHSHIY-RVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVH 232
S P+LP+ G+ + H+ + P F + V V+G SG +S ++ + A E+
Sbjct: 154 SVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELF 213
Query: 233 LSAKS 237
+ ++
Sbjct: 214 VFQRT 218
>pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Met446gly
Mutant
Length = 542
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 97/247 (39%), Gaps = 49/247 (19%)
Query: 4 DDHQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYD--PNTDQTE 61
D +Q + +V V+GAG SGL A LR+ G V V+E DVGG W ++ P + +
Sbjct: 8 DSRRQPPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGA-RCD 66
Query: 62 VHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIR 121
+ S Y Y+ VL++ R+ E+ Y+ +F LR I
Sbjct: 67 IESIEYC------------YSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGIT 114
Query: 122 FNTRVEYVGMLDC----------GELIIGNDLIXXXXXXXXXXXXXXXXXXXXXXXXXTG 171
F+T V + G+ I LI +G
Sbjct: 115 FHTTVTAAAFDEATNTWTVDTNHGDRIRARYLI-----------------------MASG 151
Query: 172 HYSYPRLPSIKGMDKWKRKQMHSHIY-RVPEPFRNEVVVVVGNSLSGQDISMELVEVAKE 230
S P+LP+ G+ + H+ + P F + V V+G SG +S ++ + A E
Sbjct: 152 QLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAE 211
Query: 231 VHLSAKS 237
+ + ++
Sbjct: 212 LFVFQRT 218
>pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Mes
pdb|2YM1|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Nadp
pdb|2YM2|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant Reduced State With Nadp
Length = 542
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 97/247 (39%), Gaps = 49/247 (19%)
Query: 4 DDHQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYD--PNTDQTE 61
D +Q + +V V+GAG SGL A LR+ G V V+E DVGG W ++ P + +
Sbjct: 8 DSRRQPPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGA-RCD 66
Query: 62 VHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIR 121
+ S Y Y+ VL++ R+ E+ Y+ +F LR I
Sbjct: 67 IESIEYC------------YSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGIT 114
Query: 122 FNTRVEYVGMLDC----------GELIIGNDLIXXXXXXXXXXXXXXXXXXXXXXXXXTG 171
F+T V + G+ I LI +G
Sbjct: 115 FHTTVTAAAFDEATNTWTVDTNHGDRIRARYLI-----------------------MASG 151
Query: 172 HYSYPRLPSIKGMDKWKRKQMHSHIY-RVPEPFRNEVVVVVGNSLSGQDISMELVEVAKE 230
S P+LP+ G+ + H+ + P F + V V+G SG +S ++ + A E
Sbjct: 152 QLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAE 211
Query: 231 VHLSAKS 237
+ + ++
Sbjct: 212 LFVFQRT 218
>pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger
Monooxygenase
pdb|2YLR|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp
pdb|2YLS|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Reduced
Enzyme Bound To Nadp
pdb|2YLT|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp And Mes
Length = 542
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 97/247 (39%), Gaps = 49/247 (19%)
Query: 4 DDHQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYD--PNTDQTE 61
D +Q + +V V+GAG SGL A LR+ G V V+E DVGG W ++ P + +
Sbjct: 8 DSRRQPPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGA-RCD 66
Query: 62 VHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIR 121
+ S Y Y+ VL++ R+ E+ Y+ +F LR I
Sbjct: 67 IESIEYC------------YSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGIT 114
Query: 122 FNTRVEYVGMLDC----------GELIIGNDLIXXXXXXXXXXXXXXXXXXXXXXXXXTG 171
F+T V + G+ I LI +G
Sbjct: 115 FHTTVTAAAFDEATNTWTVDTNHGDRIRARYLI-----------------------MASG 151
Query: 172 HYSYPRLPSIKGMDKWKRKQMHSHIY-RVPEPFRNEVVVVVGNSLSGQDISMELVEVAKE 230
S P+LP+ G+ + H+ + P F + V V+G SG +S ++ + A E
Sbjct: 152 QLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAE 211
Query: 231 VHLSAKS 237
+ + ++
Sbjct: 212 LFVFQRT 218
>pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 15/128 (11%)
Query: 1 MVSDDHQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYD--PNTD 58
+ + D S +V V+GAG +GL A R +G V E VGG W ++ P
Sbjct: 10 VTAPDATTGTTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGA- 68
Query: 59 QTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLRE 118
+ +V S Y+ Y+ P + ++ ++ E+ YL+ RF LR
Sbjct: 69 RCDVESIDYS------------YSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRR 116
Query: 119 MIRFNTRV 126
IRF+TRV
Sbjct: 117 DIRFDTRV 124
>pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
pdb|4AOX|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 15/128 (11%)
Query: 1 MVSDDHQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYD--PNTD 58
+ + D S +V V+GAG +GL A R +G V E VGG W ++ P
Sbjct: 10 VTAPDATTGTTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGA- 68
Query: 59 QTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLRE 118
+ +V S Y+ Y+ P + ++ ++ E+ YL+ RF LR
Sbjct: 69 RCDVESIDYS------------YSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRR 116
Query: 119 MIRFNTRV 126
IRF+TRV
Sbjct: 117 DIRFDTRV 124
>pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 15/128 (11%)
Query: 1 MVSDDHQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYD--PNTD 58
+ + D S +V V+GAG +GL A R +G V E VGG W ++ P
Sbjct: 10 VTAPDATTGTTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGA- 68
Query: 59 QTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLRE 118
+ +V S Y+ Y+ P + ++ ++ E+ YL+ RF LR
Sbjct: 69 RCDVESIDYS------------YSFSPELEQEWNWSEKYATQPEILAYLEHVADRFDLRR 116
Query: 119 MIRFNTRV 126
IRF+TRV
Sbjct: 117 DIRFDTRV 124
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
Length = 482
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 28/38 (73%)
Query: 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50
++V ++GAGPSGL AAREL+K G V VLE VGG+
Sbjct: 8 RDVVIVGAGPSGLTAARELKKAGLSVAVLEARDRVGGR 45
>pdb|3GF4|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To
Udp-Glucose
pdb|3GF4|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To
Udp-Glucose
pdb|3INR|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Oxidized)
pdb|3INR|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Oxidized)
pdb|3INT|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Reduced)
pdb|3INT|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Reduced)
pdb|3KYB|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Flavin
Mononucleotide
pdb|3KYB|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Flavin
Mononucleotide
Length = 390
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYA 68
+SK + ++GAG SG V R+L ++GH+V +++Q +GG YD +T V VY
Sbjct: 2 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNS-YDARDSETNVMVHVYG 58
>pdb|2BI7|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae
Oxidised Fad
pdb|2BI8|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae
With Reduced Fad
Length = 384
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYA 68
+SK + ++GAG SG V R+L ++GH+V +++Q +GG YD +T V VY
Sbjct: 2 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNS-YDARDSETNVMVHVYG 58
>pdb|1WAM|A Chain A, Structure Of Udp-Galactopyranose Mutase From Klebsiella
Pneumoniae With Fadh-
Length = 384
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYA 68
+SK + ++GAG SG V R+L ++GH+V +++Q +GG YD +T V VY
Sbjct: 2 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNS-YDARDSETNVMVHVYG 58
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYD 54
++V ++GAGPSGL AA LRK G V V+E VGG+ D
Sbjct: 6 RDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTD 47
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c Mutant
Length = 453
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYD 54
++V ++GAGPSGL AA LRK G V V+E VGG+ D
Sbjct: 6 RDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTD 47
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYD 54
++V ++GAGPSGL AA LRK G V V+E VGG+ D
Sbjct: 6 RDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTD 47
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
Length = 497
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
Query: 9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYA 68
+ K V ++GAG SGL AA L GH+V VLE + GGQ ++ E +
Sbjct: 43 TSNPKRVVIVGAGMSGLSAAYVLANAGHQVTVLEASERAGGQ--VKTYRNEKEGWYANLG 100
Query: 69 SLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKE-LWLYLKDFCQRFG 115
+RL I+ ++ K G + F E W ++K+ +R G
Sbjct: 101 PMRLPEKHRIVR----EYIRKFGLQLNEFSQENENAWYFIKNIRKRVG 144
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
Length = 486
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 13/113 (11%)
Query: 7 QQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSV 66
++ + K+V V+GAG SGL AA L GH+V VLE + GG+ N+ +
Sbjct: 28 KKTSNPKHVVVVGAGMSGLSAAYVLAGAGHKVTVLEASERAGGRVRTHRNSKE-----GW 82
Query: 67 YASL---RLTSPREIMGYTDFPFVLKKGRDVRRFPGHKE-LWLYLKDFCQRFG 115
YA+L R+ I+ ++ K G ++ F + W ++K+ +R G
Sbjct: 83 YANLGPMRIPEKHRIVR----EYIRKFGLNLNEFSQENDNAWYFIKNIRKRVG 131
>pdb|2JAE|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JAE|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JB1|A Chain A, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB1|B Chain B, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB3|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB3|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB2|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine.
pdb|2JB2|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine
Length = 489
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ-WLYDPNTDQTEV 62
S +V V+G GP+GL +A EL+K G++V VLE GG+ W +++T++
Sbjct: 11 SHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGSEETDL 62
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex With
L- Phenylalanine
Length = 486
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 7/110 (6%)
Query: 7 QQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSV 66
+ + K+V V+GAG SGL AA L GH+V VLE + GG+ N D+ + ++++
Sbjct: 28 KATSNPKHVVVVGAGMSGLSAAYVLSGAGHQVTVLEASERAGGRVRTYRN-DKEDWYANL 86
Query: 67 YASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKE-LWLYLKDFCQRFG 115
+RL I+ ++ K G + F + W ++K+ +R G
Sbjct: 87 -GPMRLPEKHRIVR----EYIRKFGLQLNEFSQENDNAWYFIKNIRKRVG 131
>pdb|1PS9|A Chain A, The Crystal Structure And Reaction Mechanism Of E. Coli
2,4- Dienoyl Coa Reductase
Length = 671
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQW 51
Q KN+ V+GAGP+GL A GH+V + + + ++GGQ+
Sbjct: 372 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQF 412
>pdb|3K30|A Chain A, Histamine Dehydrogenase From Nocardiodes Simplex
pdb|3K30|B Chain B, Histamine Dehydrogenase From Nocardiodes Simplex
Length = 690
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50
V V+GAGPSGL AAR L G+ VV+ E D+GG+
Sbjct: 394 VLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGR 429
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYD 54
++V ++GAG SGL AA LRK G V V+E VGG+ D
Sbjct: 6 RDVAIVGAGISGLAAATALRKAGLSVAVIEARDRVGGRTWTD 47
>pdb|3UCL|A Chain A, Cyclohexanone-Bound Crystal Structure Of Cyclohexanone
Monooxygenase In The Rotated Conformation
Length = 573
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 87/231 (37%), Gaps = 33/231 (14%)
Query: 8 QCAQSKNVCVIGAGPSGLVAARELRKE-GHRVVVLEQNHDVGGQWLYD--PNTDQTEVHS 64
Q + + VIGAG G+ A +L E G V ++ GG W ++ P ++ S
Sbjct: 37 QTTHTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGA-LSDTES 95
Query: 65 SVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNT 124
+Y R + R++ L++ + E+ YL+D RF LR +F T
Sbjct: 96 HLY---RFSFDRDL---------LQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGT 143
Query: 125 RVEYVGMLDCGELIIGNDLIXXXXXXXXXXXXXXXXXXXXXXXXXTGHYSYPRLPSIKGM 184
V LD L G S P++ G+
Sbjct: 144 EVTSALYLDDENL-------------WEVTTDHGEVYRAKYVVNAVGLLSAINFPNLPGL 190
Query: 185 DKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEV-HLS 234
D ++ + +H+ + + V V+G +GQ + + +A EV HL+
Sbjct: 191 DTFEGETIHTAAWPEGKSLAGRRVGVIGTGSTGQQV---ITSLAPEVEHLT 238
>pdb|3GWD|A Chain A, Closed Crystal Structure Of Cyclohexanone Monooxygenase
pdb|3GWF|A Chain A, Open Crystal Structure Of Cyclohexanone Monooxygenase
Length = 540
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 87/231 (37%), Gaps = 33/231 (14%)
Query: 8 QCAQSKNVCVIGAGPSGLVAARELRKE-GHRVVVLEQNHDVGGQWLYD--PNTDQTEVHS 64
Q + + VIGAG G+ A +L E G V ++ GG W ++ P ++ S
Sbjct: 4 QTTHTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGA-LSDTES 62
Query: 65 SVYASLRLTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNT 124
+Y R + R++ L++ + E+ YL+D RF LR +F T
Sbjct: 63 HLY---RFSFDRDL---------LQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGT 110
Query: 125 RVEYVGMLDCGELIIGNDLIXXXXXXXXXXXXXXXXXXXXXXXXXTGHYSYPRLPSIKGM 184
V LD L G S P++ G+
Sbjct: 111 EVTSALYLDDENL-------------WEVTTDHGEVYRAKYVVNAVGLLSAINFPNLPGL 157
Query: 185 DKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEV-HLS 234
D ++ + +H+ + + V V+G +GQ + + +A EV HL+
Sbjct: 158 DTFEGETIHTAAWPEGKSLAGRRVGVIGTGSTGQQV---ITSLAPEVEHLT 205
>pdb|2XDO|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2Y6Q|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|4A6N|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Tigecycline
pdb|4A6N|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Tigecycline
pdb|4A6N|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Tigecycline
pdb|4A99|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Minocycline
pdb|4A99|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Minocycline
pdb|4A99|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Minocycline
pdb|4A99|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Minocycline
Length = 398
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 6 HQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD 46
H KNV +IG GP GL A+ L++ G V V E+++D
Sbjct: 20 HMNLLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDND 60
>pdb|4A6N|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx In Complex With Tigecycline
Length = 398
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 6 HQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD 46
H KNV +IG GP GL A+ L++ G V V E+++D
Sbjct: 20 HMNLLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDND 60
>pdb|2Y6R|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
Length = 398
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 6 HQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD 46
H KNV +IG GP GL A+ L++ G V V E+++D
Sbjct: 20 HMNLLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDND 60
>pdb|2XYO|A Chain A, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|B Chain B, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|C Chain C, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|D Chain D, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
Length = 399
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 6 HQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD 46
H KNV +IG GP GL A+ L++ G V V E+++D
Sbjct: 21 HXNLLSDKNVAIIGGGPVGLTXAKLLQQNGIDVSVYERDND 61
>pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|2IID|A Chain A, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|B Chain B, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|C Chain C, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|D Chain D, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
Length = 498
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 7 QQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50
+ + K+V ++GAG +GL AA L GH+V VLE + GG+
Sbjct: 28 KATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGR 71
>pdb|1SEZ|A Chain A, Crystal Structure Of Protoporphyrinogen Ix Oxidase
pdb|1SEZ|B Chain B, Crystal Structure Of Protoporphyrinogen Ix Oxidase
Length = 504
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50
+ +K V VIGAG SGL AA +L+ G V V E GG+
Sbjct: 11 SSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGK 51
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50
++ V +IG+G SGL AAR+L+ G V +LE VGG+
Sbjct: 106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGR 145
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50
++ V +IG+G SGL AAR+L+ G V +LE VGG+
Sbjct: 106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGR 145
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50
++ V +IG+G SGL AAR+L+ G V +LE VGG+
Sbjct: 155 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGR 194
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50
++ V +IG+G SGL AAR+L+ G V +LE VGG+
Sbjct: 107 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGR 146
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50
++ V +IG+G SGL AAR+L+ G V +LE VGG+
Sbjct: 155 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGR 194
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50
++ V +IG+G SGL AAR+L+ G V +LE VGG+
Sbjct: 106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGR 145
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50
++ V +IG+G SGL AAR+L+ G V +LE VGG+
Sbjct: 106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGR 145
>pdb|2E1M|A Chain A, Crystal Structure Of L-Glutamate Oxidase From
Streptomyces Sp. X-119-6
Length = 376
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD-VGGQ 50
K + ++GAG +GLVA L + GH V +LE N + VGG+
Sbjct: 45 KRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGR 83
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50
++ V +IG+G SGL AAR+L+ G V +LE VGG+
Sbjct: 277 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGR 316
>pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nad+
pdb|1ZMC|B Chain B, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nad+
pdb|1ZMC|C Chain C, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nad+
pdb|1ZMC|D Chain D, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nad+
pdb|1ZMC|E Chain E, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nad+
pdb|1ZMC|F Chain F, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nad+
pdb|1ZMC|G Chain G, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nad+
pdb|1ZMC|H Chain H, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nad+
pdb|1ZMD|A Chain A, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nadh
pdb|1ZMD|B Chain B, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nadh
pdb|1ZMD|C Chain C, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nadh
pdb|1ZMD|D Chain D, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nadh
pdb|1ZMD|E Chain E, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nadh
pdb|1ZMD|F Chain F, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nadh
pdb|1ZMD|G Chain G, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nadh
pdb|1ZMD|H Chain H, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase Complexed To Nadh
pdb|2F5Z|A Chain A, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|B Chain B, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|C Chain C, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|D Chain D, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|E Chain E, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|F Chain F, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|G Chain G, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|H Chain H, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|I Chain I, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
pdb|2F5Z|J Chain J, Crystal Structure Of Human Dihydrolipoamide
Dehydrogenase (E3) Complexed To The E3-Binding Domain
Of Human E3- Binding Protein
Length = 474
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL 52
+V VIG+GP G VAA + + G + V +E+N +GG L
Sbjct: 8 DVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCL 46
>pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|B Chain B, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|C Chain C, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|D Chain D, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|E Chain E, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|F Chain F, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|G Chain G, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|H Chain H, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|I Chain I, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|J Chain J, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex
Length = 474
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL 52
+V VIG+GP G VAA + + G + V +E+N +GG L
Sbjct: 8 DVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCL 46
>pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|B Chain B, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|C Chain C, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|D Chain D, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
Length = 495
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL 52
+V VIG+GP G VAA + + G + V +E+N +GG L
Sbjct: 29 DVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCL 67
>pdb|3V3N|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3O|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
Length = 378
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD 46
KNV +IG GP GL A+ L++ G V V E+++D
Sbjct: 7 KNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDND 40
>pdb|3P9U|A Chain A, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|B Chain B, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|C Chain C, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|D Chain D, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
Length = 378
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD 46
KNV +IG GP GL A+ L++ G V V E+++D
Sbjct: 7 KNVAIIGGGPVGLTXAKLLQQNGIDVSVYERDND 40
>pdb|2QA2|A Chain A, Crystal Structure Of Cabe, An Aromatic Hydroxylase From
Angucycline Biosynthesis, Determined To 2.7 A
Resolution
Length = 499
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQ 43
+V V+GAGP+GL+ A ELR G V+VLEQ
Sbjct: 14 SVIVVGAGPAGLMLAGELRLGGVDVMVLEQ 43
>pdb|2BRA|A Chain A, Structure Of N-Terminal Fad Binding Motif Of Mouse Mical
pdb|2BRA|B Chain B, Structure Of N-Terminal Fad Binding Motif Of Mouse Mical
Length = 484
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 2 VSDDHQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQ 43
V Q C +K + V+GAGP GL AA EL G RVV++E+
Sbjct: 75 VYQQGQACTNTKCL-VVGAGPCGLRAAVELALLGARVVLVEK 115
>pdb|2BRY|A Chain A, Crystal Structure Of The Native Monooxygenase Domain Of
Mical At 1.45 A Resolution
pdb|2BRY|B Chain B, Crystal Structure Of The Native Monooxygenase Domain Of
Mical At 1.45 A Resolution
pdb|2C4C|A Chain A, Crystal Structure Of The Nadph-Treated Monooxygenase
Domain Of Mical
pdb|2C4C|B Chain B, Crystal Structure Of The Nadph-Treated Monooxygenase
Domain Of Mical
Length = 497
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 2 VSDDHQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQ 43
V Q C +K + V+GAGP GL AA EL G RVV++E+
Sbjct: 83 VYQQGQACTNTKCL-VVGAGPCGLRAAVELALLGARVVLVEK 123
>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
Harmine
Length = 513
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50
+V VIG G SGL AA+ L + G V+VLE VGG+
Sbjct: 4 DVVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGR 40
>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
With Harmine
Length = 513
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50
+V VIG G SGL AA+ L + G V+VLE VGG+
Sbjct: 4 DVVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGR 40
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50
+V VIG G SGL AA+ L + G V+VLE VGG+
Sbjct: 15 DVVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGR 51
>pdb|3K7M|X Chain X, Crystal Structure Of 6-Hydroxy-L-Nicotine Oxidase From
Arthrobacter Nicotinovorans
pdb|3K7Q|X Chain X, Crystal Structure Of Substrate-Bound
6-Hydroxy-L-Nicotine Oxidase From Arthrobacter
Nicotinovorans
pdb|3NG7|X Chain X, Complex Of Dithionite-Reduced 6-Hydroxy-L-Nicotine
Oxidase With Substrate Bound At Active Site And
Inhibitor At Exit Cavity
pdb|3NGC|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With
Intermediate Methylmyosmine Product Formed During
Catalytic Turnover
pdb|3NH3|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Final
Ketone Product Formed During Catalytic Turnover
pdb|3NHO|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Product
Bound At Active Site
pdb|3NK0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Inhibitor
Bound At Active Site And Turnover Product At Exit
Cavity
pdb|3NK1|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Serotonin
pdb|3NK2|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Dopamine
pdb|3NN6|X Chain X, Crystal Structure Of Inhibitor-Bound In Active Centre
6-Hydroxy-L- Nicotine Oxidase From Arthrobacter
Nicotinovorans
pdb|3NN0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With
Nicotinamide
Length = 431
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50
+ V+G G SGL AAR+L G +V++LE +GG+
Sbjct: 3 DAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGR 39
>pdb|3K7T|A Chain A, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
pdb|3K7T|B Chain B, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
Length = 425
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50
+ V+G G SGL AAR+L G +V++LE +GG+
Sbjct: 3 DAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGR 39
>pdb|2IVD|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVD|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVE|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
pdb|2IVE|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
Length = 478
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
NV V+G G SGL A LR G V+LE + +GG
Sbjct: 18 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGG 53
>pdb|2TMD|A Chain A, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|2TMD|B Chain B, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|1DJN|A Chain A, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJN|B Chain B, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1O94|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O94|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
Length = 729
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 7 QQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
+Q +V ++GAGPSG AAR L + G+ V + + +GG
Sbjct: 384 RQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGG 426
>pdb|1DJQ|A Chain A, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJQ|B Chain B, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
Length = 729
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 7 QQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
+Q +V ++GAGPSG AAR L + G+ V + + +GG
Sbjct: 384 RQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGG 426
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 9/52 (17%)
Query: 9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQT 60
A + ++GAGP G++AA L + G +V++LE+ GG P+T QT
Sbjct: 4 SATPYDYIIVGAGPGGIIAADRLSEAGKKVLLLER----GG-----PSTKQT 46
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In
Complex With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In
Complex With Cellobionolactam
Length = 541
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 9/45 (20%)
Query: 16 CVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQT 60
++GAGP G++AA L + G +V++LE+ GG P+T QT
Sbjct: 6 IIVGAGPGGIIAADRLSEAGKKVLLLER----GG-----PSTKQT 41
>pdb|3NIX|A Chain A, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|B Chain B, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|C Chain C, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|D Chain D, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|E Chain E, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|F Chain F, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|G Chain G, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|H Chain H, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43
Length = 421
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQ 43
+V VIGAGP+G VAA + K G +V ++E+
Sbjct: 7 DVLVIGAGPAGTVAASLVNKSGFKVKIVEK 36
>pdb|3HDQ|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDY|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HE3|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3MJ4|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
Length = 397
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 28/47 (59%)
Query: 3 SDDHQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49
+ + QQ ++ + ++GAG +G V A L G RV+++++ +GG
Sbjct: 20 TTNEQQESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGG 66
>pdb|1I8T|A Chain A, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
pdb|1I8T|B Chain B, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
Length = 367
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 16 CVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHS 64
++G+G G V A EL+K +V+V+E+ + +GG Y + + ++H
Sbjct: 5 IIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGN-AYTEDCEGIQIHK 52
>pdb|3UKQ|A Chain A, Crystal Structure Of R327k Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKQ|B Chain B, Crystal Structure Of R327k Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKQ|C Chain C, Crystal Structure Of R327k Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKQ|D Chain D, Crystal Structure Of R327k Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
Length = 510
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 12 SKNVCVIGAGPSGLVAARELRK-EGHRVVVLEQNHDVGG 49
S +V VIGAGP+GL AA+ L + +G ++++ N GG
Sbjct: 6 SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGG 44
>pdb|3UKL|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
Length = 510
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 12 SKNVCVIGAGPSGLVAARELRK-EGHRVVVLEQNHDVGG 49
S +V VIGAGP+GL AA+ L + +G ++++ N GG
Sbjct: 6 SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGG 44
>pdb|3UKK|A Chain A, Crystal Structure Of R182k-Udp-Galactopuranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKK|B Chain B, Crystal Structure Of R182k-Udp-Galactopuranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKK|C Chain C, Crystal Structure Of R182k-Udp-Galactopuranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKK|D Chain D, Crystal Structure Of R182k-Udp-Galactopuranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
Length = 517
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 12 SKNVCVIGAGPSGLVAARELRK-EGHRVVVLEQNHDVGG 49
S +V VIGAGP+GL AA+ L + +G ++++ N GG
Sbjct: 6 SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGG 44
>pdb|3UKP|A Chain A, Crystal Structure Of R327a Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|B Chain B, Crystal Structure Of R327a Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|C Chain C, Crystal Structure Of R327a Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|D Chain D, Crystal Structure Of R327a Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|E Chain E, Crystal Structure Of R327a Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|F Chain F, Crystal Structure Of R327a Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|G Chain G, Crystal Structure Of R327a Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|H Chain H, Crystal Structure Of R327a Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
Length = 509
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 12 SKNVCVIGAGPSGLVAARELRK-EGHRVVVLEQNHDVGG 49
S +V VIGAGP+GL AA+ L + +G ++++ N GG
Sbjct: 6 SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGG 44
>pdb|3UTE|A Chain A, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Sulfate Complex
pdb|3UTE|B Chain B, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Sulfate Complex
pdb|3UTE|C Chain C, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Sulfate Complex
pdb|3UTE|D Chain D, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Sulfate Complex
pdb|3UTF|A Chain A, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase In Reduced State
pdb|3UTF|B Chain B, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase In Reduced State
pdb|3UTF|C Chain C, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase In Reduced State
pdb|3UTF|D Chain D, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase In Reduced State
pdb|3UTG|A Chain A, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Udp In Reduced
State
pdb|3UTG|B Chain B, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Udp In Reduced
State
pdb|3UTG|C Chain C, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Udp In Reduced
State
pdb|3UTG|D Chain D, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Udp In Reduced
State
pdb|3UTH|A Chain A, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Substrate
Udp-Galp In Reduced State
pdb|3UTH|B Chain B, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Substrate
Udp-Galp In Reduced State
pdb|3UTH|C Chain C, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Substrate
Udp-Galp In Reduced State
pdb|3UTH|D Chain D, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Substrate
Udp-Galp In Reduced State
pdb|4GDC|A Chain A, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadph
pdb|4GDC|B Chain B, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadph
pdb|4GDC|C Chain C, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadph
pdb|4GDC|D Chain D, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadph
pdb|4GDD|A Chain A, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadh
pdb|4GDD|B Chain B, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadh
pdb|4GDD|C Chain C, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadh
pdb|4GDD|D Chain D, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadh
pdb|4GDE|A Chain A, Crystal Strucure Of Nadph-Reduced Aspergillus Fumigatus
Udp- Galactopyranose
pdb|4GDE|B Chain B, Crystal Strucure Of Nadph-Reduced Aspergillus Fumigatus
Udp- Galactopyranose
pdb|4GDE|C Chain C, Crystal Strucure Of Nadph-Reduced Aspergillus Fumigatus
Udp- Galactopyranose
pdb|4GDE|D Chain D, Crystal Strucure Of Nadph-Reduced Aspergillus Fumigatus
Udp- Galactopyranose
Length = 513
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 12 SKNVCVIGAGPSGLVAARELRK-EGHRVVVLEQNHDVGG 49
S +V VIGAGP+GL AA+ L + +G ++++ N GG
Sbjct: 10 SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGG 48
>pdb|3UKH|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
Length = 519
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 12 SKNVCVIGAGPSGLVAARELRK-EGHRVVVLEQNHDVGG 49
S +V VIGAGP+GL AA+ L + +G ++++ N GG
Sbjct: 6 SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGG 44
>pdb|2VVL|G Chain G, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger
Length = 495
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50
+V VIG G GL A R+L G + ++LE +GG+
Sbjct: 41 DVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGR 77
>pdb|2VVL|A Chain A, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|B Chain B, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|C Chain C, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|D Chain D, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|E Chain E, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|F Chain F, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVL|H Chain H, The Structure Of Mao-N-D3, A Variant Of Monoamine
Oxidase From Aspergillus Niger
Length = 495
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50
+V VIG G GL A R+L G + ++LE +GG+
Sbjct: 41 DVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGR 77
>pdb|2VVM|A Chain A, The Structure Of Mao-N-D5, A Variant Of Monoamine
Oxidase From Aspergillus Niger.
pdb|2VVM|B Chain B, The Structure Of Mao-N-D5, A Variant Of Monoamine
Oxidase From Aspergillus Niger
Length = 495
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50
+V VIG G GL A R+L G + ++LE +GG+
Sbjct: 41 DVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGR 77
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50
+V VIG G SGL AA+ L + V+VLE VGG+
Sbjct: 23 DVVVIGGGISGLAAAKLLSEYKINVLVLEARDRVGGR 59
>pdb|3KA7|A Chain A, Crystal Structure Of An Oxidoreductase From
Methanosarcina Mazei. Northeast Structural Genomics
Consortium Target Id Mar208
Length = 425
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 17 VIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQW 51
VIGAG GL++A L K GH V V E+ GG++
Sbjct: 5 VIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRF 39
>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8 With Psbdo
pdb|2EQ7|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From
Thermus Thermophilus Hb8 With Psbdo
pdb|2YQU|A Chain A, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
pdb|2YQU|B Chain B, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
Length = 455
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL 52
++ VIGAGP G VAA + G +V V+E+ +GG L
Sbjct: 3 DLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCL 41
>pdb|3I3L|A Chain A, Crystal Structure Of Cmls, A Flavin-Dependent Halogenase
Length = 591
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQN 44
V +IG GP+G VA L K GH V + E++
Sbjct: 25 KVAIIGGGPAGSVAGLTLHKLGHDVTIYERS 55
>pdb|3UKA|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus
pdb|3UKA|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus
pdb|3UKA|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus
pdb|3UKA|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus
pdb|3UKF|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
Length = 509
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 12 SKNVCVIGAGPSGLVAARELRK-EGHRVVVLEQNHDVGG 49
S +V VIGAGP+GL AA+ L + +G +++ N GG
Sbjct: 6 SVDVLVIGAGPTGLGAAKRLNQIDGPSWXIVDSNETPGG 44
>pdb|3DME|A Chain A, Crystal Structure Of Conserved Exported Protein From
Bordetella Pertussis. Northeast Structural Genomics
Target Ber141
pdb|3DME|B Chain B, Crystal Structure Of Conserved Exported Protein From
Bordetella Pertussis. Northeast Structural Genomics
Target Ber141
Length = 369
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEV-HSSVY 67
+ VIGAG GL AR L GH V+V E +G ++ +EV H+ +Y
Sbjct: 6 DCIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIG----TGTSSRNSEVIHAGIY 56
>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant
pdb|4ECH|B Chain B, Yeast Polyamine Oxidase Fms1, H67q Mutant
Length = 516
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 13 KNVCVIGAGPSGLVAARELRKEG-HRVVVLEQNHDVGGQ 50
K V +IGAG +GL AA L + G +VLE VGG+
Sbjct: 9 KKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGR 47
>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|1Z6L|B Chain B, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|3BI2|A Chain A, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI2|B Chain B, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI4|A Chain A, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI4|B Chain B, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI5|A Chain A, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI5|B Chain B, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BNM|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNM|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNU|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3BNU|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3CN8|B Chain B, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CN8|A Chain A, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CND|B Chain B, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CND|A Chain A, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CNP|B Chain B, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNP|A Chain A, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNS|A Chain A, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNS|B Chain B, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNT|B Chain B, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
pdb|3CNT|A Chain A, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
Length = 516
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 13 KNVCVIGAGPSGLVAARELRKEG-HRVVVLEQNHDVGGQ 50
K V +IGAG +GL AA L + G +VLE VGG+
Sbjct: 9 KKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGR 47
>pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1JEH|B Chain B, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1V59|A Chain A, Crystal Structure Of Yeast Lipoamide Dehydrogenase
Complexed With Nad+
pdb|1V59|B Chain B, Crystal Structure Of Yeast Lipoamide Dehydrogenase
Complexed With Nad+
Length = 478
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL 52
+S +V +IG GP+G VAA + + G +E+ +GG L
Sbjct: 4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCL 45
>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|B Chain B, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|C Chain C, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|D Chain D, Yeast Polyamine Oxidase Fms1, N195a Mutant
Length = 516
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 13 KNVCVIGAGPSGLVAARELRKEG-HRVVVLEQNHDVGGQ 50
K V +IGAG +GL AA L + G +VLE VGG+
Sbjct: 9 KKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGR 47
>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1YY5|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|C Chain C, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|D Chain D, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
Length = 513
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 13 KNVCVIGAGPSGLVAARELRKEG-HRVVVLEQNHDVGGQ 50
K V +IGAG +GL AA L + G +VLE VGG+
Sbjct: 9 KKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGR 47
>pdb|2GQF|A Chain A, Crystal Structure Of Flavoprotein Hi0933 From Haemophilus
Influenzae Rd
Length = 401
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 17/126 (13%)
Query: 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDP----NTDQTEVHSSVY 67
S+N+ +IGAG +GL A +L K G V V + +G + L N EV + Y
Sbjct: 5 SENI-IIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILXSGGGFCNFTNLEVTPAHY 63
Query: 68 ASLRLTSPREIMG-YTDFPF---VLKKG-----RDVRRF---PGHKELWLYLKDFCQRFG 115
S + + YT++ F V ++G +++ + G +++ LK C ++G
Sbjct: 64 LSQNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEXLKSECDKYG 123
Query: 116 LREMIR 121
+ ++R
Sbjct: 124 AKILLR 129
>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From
Yeast
pdb|1RSG|B Chain B, Crystal Structure Of The Polyamine Oxidase Fms1 From
Yeast
Length = 516
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 13 KNVCVIGAGPSGLVAARELRKEG-HRVVVLEQNHDVGGQ 50
K V +IGAG +GL AA L + G +VLE VGG+
Sbjct: 9 KKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGR 47
>pdb|1RP0|A Chain A, Crystal Structure Of Thi1 Protein From Arabidopsis
Thaliana
pdb|1RP0|B Chain B, Crystal Structure Of Thi1 Protein From Arabidopsis
Thaliana
Length = 284
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 14 NVCVIGAGPSGLVAARELRKEGH-RVVVLEQN-HDVGGQWL 52
+V V+GAG +GL AA E+ K + +V ++EQ+ GG WL
Sbjct: 41 DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWL 81
>pdb|1CJ4|A Chain A, Mutant Q34t Of Para-hydroxybenzoate Hydroxylase
Length = 392
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQN 44
V +IGAGPSGL+ + L K G V+LE+
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERT 34
>pdb|1CC6|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQN 44
V +IGAGPSGL+ + L K G V+LE+
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1BGN|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 269 Replaced By Thr
(R269t), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQN 44
V +IGAGPSGL+ + L K G V+LE+
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1BKW|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys116
Replaced By Ser (c116s) And Arg44 Replaced By Lys
(r44k), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQN 44
V +IGAGPSGL+ + L K G V+LE+
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1BF3|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 42 Replaced By Lys
(R42k), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQN 44
V +IGAGPSGL+ + L K G V+LE+
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1PBB|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBC|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBD|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQN 44
V +IGAGPSGL+ + L K G V+LE+
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1K0I|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With 100mm
Phb
pdb|1K0J|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With Nadph
And Free Of P- Ohb
pdb|1K0L|A Chain A, Pseudomonas Aeruginosa Phbh R220q Free Of P-ohb
Length = 394
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQN 44
V +IGAGPSGL+ + L K G V+LE+
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1PXA|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQN 44
V +IGAGPSGL+ + L K G V+LE+
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1DOB|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
Length = 394
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQN 44
V +IGAGPSGL+ + L K G V+LE+
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1PXC|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQN 44
V +IGAGPSGL+ + L K G V+LE+
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1PXB|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-hydroxybenzoate Hydroxylase: The Tyr201phe,
Tyr385phe, And Asn300asp Variants
Length = 394
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQN 44
V +IGAGPSGL+ + L K G V+LE+
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1D7L|A Chain A, Structure-function Correlations Of The Reaction Of
Reduced Nicotinamide Analogs With P-hydroxybenzoate
Hydroxylase Substituted With A Series Of 8-substituted
Flavins
pdb|1DOC|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1DOD|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1DOE|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of
A Prosthetic Group Regulates Catalysis
pdb|1IUS|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 5.0
pdb|1IUT|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 7.4
pdb|1IUU|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 9.4
pdb|1IUV|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 5.0
pdb|1IUW|A Chain A, P-hydroxybenzoate Hydroxylase Complexed With
4-4-hydroxybenzoate At Ph 7.4
pdb|1IUX|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 9.4
Length = 394
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQN 44
V +IGAGPSGL+ + L K G V+LE+
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1BGJ|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys 116
Replaced By Ser (c116s) And His 162 Replaced By Arg
(h162r), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQN 44
V +IGAGPSGL+ + L K G V+LE+
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1PBF|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate
And Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQN 44
V +IGAGPSGL+ + L K G V+LE+
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1PBE|A Chain A, Crystal Structure Of The P-Hydroxybenzoate
Hydroxylase-Substrate Complex Refined At 1.9 Angstroms
Resolution. Analysis Of The Enzyme- Substrate And
Enzyme-Product Complexes
pdb|1PDH|A Chain A, Crystal Structure Of P-hydroxybenzoate Hydroxylase
Reconstituted With The Modified Fad Present In Alcohol
Oxidase From Methylotrophic Yeasts: Evidence For An
Arabinoflavin
pdb|1PHH|A Chain A, Crystal Structure Of P-Hydroxybenzoate Hydroxylase
Complexed With Its Reaction Product
3,4-Dihydroxybenzoate
pdb|2PHH|A Chain A, The Coenzyme Analogue Adenosine 5-Diphosphoribose
Displaces Fad In The Active Site Of P-Hydroxybenzoate
Hydroxylase. An X-Ray Crystallographic Investigation
Length = 394
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQN 44
V +IGAGPSGL+ + L K G V+LE+
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1YKJ|A Chain A, A45g P-Hydroxybenzoate Hydroxylase With
P-Hydroxybenzoate Bound
pdb|1YKJ|B Chain B, A45g P-Hydroxybenzoate Hydroxylase With
P-Hydroxybenzoate Bound
Length = 394
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQN 44
V +IGAGPSGL+ + L K G V+LE+
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1CJ3|A Chain A, Mutant Tyr38glu Of Para-Hydroxybenzoate Hydroxylase
Length = 392
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQN 44
V +IGAGPSGL+ + L K G V+LE+
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1CC4|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQN 44
V +IGAGPSGL+ + L K G V+LE+
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
>pdb|1CJ2|A Chain A, Mutant Gln34arg Of Para-Hydroxybenzoate Hydroxylase
Length = 391
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQN 44
V +IGAGPSGL+ + L K G V+LE+
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERR 34
>pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase
From Sinorhizobium Meliloti 1021
pdb|3URH|B Chain B, Crystal Structure Of A Dihydrolipoamide Dehydrogenase
From Sinorhizobium Meliloti 1021
Length = 491
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 8 QCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL 52
Q + ++ VIG+GP G V A + + G +V V+E+ GG L
Sbjct: 21 QSXXAYDLIVIGSGPGGYVCAIKAAQLGXKVAVVEKRSTYGGTCL 65
>pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|E Chain E, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|H Chain H, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|K Chain K, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1BXR|A Chain A, Structure Of Carbamoyl Phosphate Synthetase Complexed
With The Atp Analog Amppnp
pdb|1BXR|C Chain C, Structure Of Carbamoyl Phosphate Synthetase Complexed
With The Atp Analog Amppnp
pdb|1BXR|E Chain E, Structure Of Carbamoyl Phosphate Synthetase Complexed
With The Atp Analog Amppnp
pdb|1BXR|G Chain G, Structure Of Carbamoyl Phosphate Synthetase Complexed
With The Atp Analog Amppnp
pdb|1C30|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase:
Small Subunit Mutation C269s
pdb|1C30|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase:
Small Subunit Mutation C269s
pdb|1C30|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase:
Small Subunit Mutation C269s
pdb|1C30|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase:
Small Subunit Mutation C269s
pdb|1C3O|A Chain A, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|C Chain C, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|E Chain E, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|G Chain G, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1CS0|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1KEE|A Chain A, Inactivation Of The Amidotransferase Activity Of
Carbamoyl Phosphate Synthetase By The Antibiotic
Acivicin
pdb|1KEE|C Chain C, Inactivation Of The Amidotransferase Activity Of
Carbamoyl Phosphate Synthetase By The Antibiotic
Acivicin
pdb|1KEE|E Chain E, Inactivation Of The Amidotransferase Activity Of
Carbamoyl Phosphate Synthetase By The Antibiotic
Acivicin
pdb|1KEE|G Chain G, Inactivation Of The Amidotransferase Activity Of
Carbamoyl Phosphate Synthetase By The Antibiotic
Acivicin
pdb|1T36|A Chain A, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|C Chain C, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|E Chain E, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|G Chain G, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
Length = 1073
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 11/43 (25%)
Query: 13 KNVCVIGAGP-----------SGLVAARELRKEGHRVVVLEQN 44
K++ ++GAGP SG A + LR+EG+RV+++ N
Sbjct: 8 KSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSN 50
>pdb|4DGK|A Chain A, Crystal Structure Of Phytoene Desaturase Crti From
Pantoea Ananatis
Length = 501
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50
K VIGAG GL A L+ G V++LEQ GG+
Sbjct: 2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGR 39
>pdb|2CVJ|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|B Chain B, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
Length = 180
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNH 45
+V V+G GPSGL AA L + G +V+VL+
Sbjct: 3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGR 34
>pdb|2GMH|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase In Complexed With Ubiquinone
pdb|2GMH|B Chain B, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase In Complexed With Ubiquinone
pdb|2GMJ|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase
pdb|2GMJ|B Chain B, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase
Length = 584
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 7 QQCAQSKNVCVIGAGPSGLVAARELRK------EGHRVVVLEQNHDVGGQWL 52
++ A+ +V ++GAGP+GL AA L++ + RV ++E+ +G L
Sbjct: 30 ERFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTL 81
>pdb|3E1T|A Chain A, Structure And Action Of The Myxobacterial Chondrochloren
Halogenase Cndh, A New Variant Of Fad-Dependent
Halogenases
Length = 512
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 16/86 (18%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQN----HDVGGQWLYDPNTDQTEVHSSVYAS 69
++ VIG GP G A + GHRV++LE+ H +G L P T VH + A
Sbjct: 9 DLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLL--PAT----VH-GICAM 61
Query: 70 LRLTSPREIMGYTDFPFVLKKGRDVR 95
L LT + G F +K+G R
Sbjct: 62 LGLTDEMKRAG-----FPIKRGGTFR 82
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 15 VCVIGAGPSGLVAARELRKEG-HRVVVLEQNHDVGGQ 50
V V+GAG SG+ AA+ L + G +++LE +GG+
Sbjct: 7 VIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGR 43
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 15 VCVIGAGPSGLVAARELRKEG-HRVVVLEQNHDVGGQ 50
V V+GAG SG+ AA+ L + G +++LE +GG+
Sbjct: 7 VIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGR 43
>pdb|2Y0C|A Chain A, Bcec Mutation Y10s
pdb|2Y0C|B Chain B, Bcec Mutation Y10s
pdb|2Y0C|C Chain C, Bcec Mutation Y10s
pdb|2Y0C|D Chain D, Bcec Mutation Y10s
Length = 478
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 24/110 (21%)
Query: 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH------DVGGQWLYDPNTDQTEVHSS 65
S N+ +IG+G GLV L GH V L+ + + GG +++P + +
Sbjct: 8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNR 67
Query: 66 VYASLRLT------------------SPREIMGYTDFPFVLKKGRDVRRF 97
LR + +P + G D +VL R++ R+
Sbjct: 68 SAGRLRFSTDIEAAVAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRY 117
>pdb|2Y0D|A Chain A, Bcec Mutation Y10k
pdb|2Y0D|B Chain B, Bcec Mutation Y10k
pdb|2Y0D|C Chain C, Bcec Mutation Y10k
pdb|2Y0D|D Chain D, Bcec Mutation Y10k
Length = 478
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 24/110 (21%)
Query: 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH------DVGGQWLYDPNTDQTEVHSS 65
S N+ +IG+G GLV L GH V L+ + + GG +++P + +
Sbjct: 8 SMNLTIIGSGKVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNR 67
Query: 66 VYASLRLT------------------SPREIMGYTDFPFVLKKGRDVRRF 97
LR + +P + G D +VL R++ R+
Sbjct: 68 SAGRLRFSTDIEAAVAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRY 117
>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The
Binding Domain Of The Dihydrolipoamide Acetylase
pdb|1EBD|B Chain B, Dihydrolipoamide Dehydrogenase Complexed With The
Binding Domain Of The Dihydrolipoamide Acetylase
Length = 455
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 17 VIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL 52
V+GAGP G VAA + G +V ++E+ ++GG L
Sbjct: 8 VVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCL 42
>pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|C Chain C, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|E Chain E, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|G Chain G, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
Length = 1073
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 11/43 (25%)
Query: 13 KNVCVIGAGP-----------SGLVAARELRKEGHRVVVLEQN 44
K++ ++GAGP SG A + LR+EG+RV+ + N
Sbjct: 8 KSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSN 50
>pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escherichis Coli
With Complexed With The Allosteric Ligand Imp
pdb|1CE8|C Chain C, Carbamoyl Phosphate Synthetase From Escherichis Coli
With Complexed With The Allosteric Ligand Imp
pdb|1CE8|E Chain E, Carbamoyl Phosphate Synthetase From Escherichis Coli
With Complexed With The Allosteric Ligand Imp
pdb|1CE8|G Chain G, Carbamoyl Phosphate Synthetase From Escherichis Coli
With Complexed With The Allosteric Ligand Imp
pdb|1M6V|A Chain A, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|C Chain C, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|E Chain E, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|G Chain G, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
Length = 1073
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 11/43 (25%)
Query: 13 KNVCVIGAGP-----------SGLVAARELRKEGHRVVVLEQN 44
K++ ++GAGP SG A + LR+EG+RV+ + N
Sbjct: 8 KSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSN 50
>pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|B Chain B, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|C Chain C, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
Length = 302
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV 47
K+V VIG G G A+ GH VV+++Q D+
Sbjct: 16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDI 50
>pdb|1M75|A Chain A, Crystal Structure Of The N208s Mutant Of
L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad
And Acetoacetyl-Coa
pdb|1M75|B Chain B, Crystal Structure Of The N208s Mutant Of
L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad
And Acetoacetyl-Coa
Length = 302
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV 47
K+V VIG G G A+ GH VV+++Q D+
Sbjct: 16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDI 50
>pdb|1LSJ|A Chain A, Crystal Structure Of The E110q Mutant Of
L-3-hydroxyacyl- Coa Dehydrogenase In Complex With Nad
pdb|1LSJ|B Chain B, Crystal Structure Of The E110q Mutant Of
L-3-hydroxyacyl- Coa Dehydrogenase In Complex With Nad
Length = 302
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV 47
K+V VIG G G A+ GH VV+++Q D+
Sbjct: 16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDI 50
>pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mutant Of Human
L-3- Hydroxyacyl-Coa Dehydrogenase
pdb|1IL0|B Chain B, X-Ray Crystal Structure Of The E170q Mutant Of Human
L-3- Hydroxyacyl-Coa Dehydrogenase
Length = 302
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV 47
K+V VIG G G A+ GH VV+++Q D+
Sbjct: 16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDI 50
>pdb|1M76|A Chain A, Crystal Structure Of The S137c Mutant Of
L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad
And Acetoacetyl-Coa
pdb|1M76|B Chain B, Crystal Structure Of The S137c Mutant Of
L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad
And Acetoacetyl-Coa
Length = 302
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV 47
K+V VIG G G A+ GH VV+++Q D+
Sbjct: 16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDI 50
>pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
pdb|1F0Y|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
Length = 302
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV 47
K+V VIG G G A+ GH VV+++Q D+
Sbjct: 16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDI 50
>pdb|1LSO|A Chain A, Crystal Structure Of The S137a Mutant Of
L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad
pdb|1LSO|B Chain B, Crystal Structure Of The S137a Mutant Of
L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad
Length = 302
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV 47
K+V VIG G G A+ GH VV+++Q D+
Sbjct: 16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDI 50
>pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
pdb|3HAD|B Chain B, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
Length = 308
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV 47
K+V VIG G G A+ GH VV+++Q D+
Sbjct: 16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDI 50
>pdb|1F12|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-
Hydroxybutyryl-Coa
pdb|1F12|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-
Hydroxybutyryl-Coa
pdb|1F14|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase (Apo)
pdb|1F14|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase (Apo)
pdb|1F17|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Nadh
pdb|1F17|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Nadh
Length = 310
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV 47
K+V VIG G G A+ GH VV+++Q D+
Sbjct: 16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDI 50
>pdb|1AUP|A Chain A, Glutamate Dehydrogenase
Length = 449
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLR 71
K V + G G AA++L + G + V L ++YDP TE + +R
Sbjct: 230 GKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDG----YIYDPEGITTEEKINYMLEMR 285
Query: 72 LTSPREIMGYTDFPFVLKKGRDVRRFPGHK 101
+ ++ Y D K G V+ FPG K
Sbjct: 286 ASGRNKVQDYAD-----KFG--VQFFPGEK 308
>pdb|1HRD|A Chain A, Glutamate Dehydrogenase
pdb|1HRD|B Chain B, Glutamate Dehydrogenase
pdb|1HRD|C Chain C, Glutamate Dehydrogenase
pdb|1BGV|A Chain A, Glutamate Dehydrogenase
Length = 449
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLR 71
K V + G G AA++L + G + V L ++YDP TE + +R
Sbjct: 230 GKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDG----YIYDPEGITTEEKINYMLEMR 285
Query: 72 LTSPREIMGYTDFPFVLKKGRDVRRFPGHK 101
+ ++ Y D K G V+ FPG K
Sbjct: 286 ASGRNKVQDYAD-----KFG--VQFFPGEK 308
>pdb|1K89|A Chain A, K89l Mutant Of Glutamate Dehydrogenase
Length = 449
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLR 71
K V + G G AA++L + G + V L ++YDP TE + +R
Sbjct: 230 GKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDG----YIYDPEGITTEEKINYMLEMR 285
Query: 72 LTSPREIMGYTDFPFVLKKGRDVRRFPGHK 101
+ ++ Y D K G V+ FPG K
Sbjct: 286 ASGRNKVQDYAD-----KFG--VQFFPGEK 308
>pdb|1CJC|A Chain A, Structure Of Adrenodoxin Reductase Of Mitochondrial P450
Systems
pdb|1E1L|A Chain A, Structure Of Adrenodoxin Reductase In Complex With Nadp
Obtained By Cocrystallisation
pdb|1E1K|A Chain A, Adrenodoxin Reductase In Complex With Nadp+ Obtained By
A Soaking Experiment
pdb|1E1M|A Chain A, Adrenodoxin Reductase In Complex With Nadph Obtained By
A Soaking Experiment
pdb|1E1N|A Chain A, Structure Of Adrenodoxin Reductase At 2.4 Angstrom In
Crystal Form A''
pdb|1E6E|A Chain A, Adrenodoxin ReductaseADRENODOXIN COMPLEX OF
MITOCHONDRIAL P450 Systems
pdb|1E6E|C Chain C, Adrenodoxin ReductaseADRENODOXIN COMPLEX OF
MITOCHONDRIAL P450 Systems
Length = 460
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 11 QSKNVCVIGAGPSGLVAARELRKEGHRV 38
Q+ +CV+G+GP+G A+ L K R
Sbjct: 5 QTPQICVVGSGPAGFYTAQHLLKHHSRA 32
>pdb|2X3N|A Chain A, Crystal Structure Of Pqsl, A Probable Fad-Dependent
Monooxygenase From Pseudomonas Aeruginosa
Length = 399
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQ 43
+V + G G G + A L ++GHRVVV+EQ
Sbjct: 8 DVLINGCGIGGAMLAYLLGRQGHRVVVVEQ 37
>pdb|2I0Z|A Chain A, Crystal Structure Of A Fad Binding Protein From Bacillus
Cereus, A Putative Nad(Fad)-Utilizing Dehydrogenases
Length = 447
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 7 QQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVG 48
Q A +V VIG GPSGL+AA +EG V++L++ + +G
Sbjct: 21 QSNAMHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLG 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,883,869
Number of Sequences: 62578
Number of extensions: 577225
Number of successful extensions: 1730
Number of sequences better than 100.0: 190
Number of HSP's better than 100.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1488
Number of HSP's gapped (non-prelim): 228
length of query: 454
length of database: 14,973,337
effective HSP length: 102
effective length of query: 352
effective length of database: 8,590,381
effective search space: 3023814112
effective search space used: 3023814112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)