Query 044575
Match_columns 454
No_of_seqs 392 out of 3617
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 04:38:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044575.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044575hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02172 flavin-containing mon 100.0 1.4E-75 2.9E-80 582.9 40.8 429 8-448 6-448 (461)
2 PF00743 FMO-like: Flavin-bind 100.0 1.9E-69 4E-74 545.0 25.7 405 13-434 2-484 (531)
3 KOG1399 Flavin-containing mono 100.0 8.5E-61 1.8E-65 467.0 31.9 417 11-445 5-429 (448)
4 COG2072 TrkA Predicted flavopr 100.0 1.4E-36 3E-41 301.9 28.7 205 9-240 5-210 (443)
5 COG1249 Lpd Pyruvate/2-oxoglut 100.0 2E-35 4.2E-40 290.3 22.5 295 11-352 3-334 (454)
6 TIGR01292 TRX_reduct thioredox 100.0 3E-34 6.5E-39 274.4 28.5 277 13-351 1-297 (300)
7 COG1252 Ndh NADH dehydrogenase 100.0 1.4E-35 3E-40 284.0 15.4 336 12-427 3-402 (405)
8 PLN02507 glutathione reductase 100.0 2.9E-34 6.3E-39 290.7 24.2 296 12-354 25-364 (499)
9 TIGR01424 gluta_reduc_2 glutat 100.0 1.6E-33 3.4E-38 283.0 24.9 291 12-354 2-327 (446)
10 PRK05249 soluble pyridine nucl 100.0 2.4E-33 5.2E-38 283.7 26.3 298 11-354 4-336 (461)
11 PRK06116 glutathione reductase 100.0 1.3E-33 2.9E-38 284.4 24.3 291 11-354 3-329 (450)
12 PRK14694 putative mercuric red 100.0 5.1E-33 1.1E-37 281.0 27.6 300 12-354 6-336 (468)
13 TIGR01421 gluta_reduc_1 glutat 100.0 2E-33 4.4E-38 281.9 24.4 289 12-353 2-328 (450)
14 PTZ00318 NADH dehydrogenase-li 100.0 4.5E-34 9.8E-39 284.9 18.5 345 10-429 8-421 (424)
15 PRK06467 dihydrolipoamide dehy 100.0 4.8E-33 1E-37 280.8 24.5 298 10-354 2-338 (471)
16 PRK07846 mycothione reductase; 100.0 4.5E-33 9.7E-38 279.3 23.2 296 13-353 2-325 (451)
17 PRK06370 mercuric reductase; V 100.0 1.1E-32 2.4E-37 278.5 25.0 294 9-353 2-334 (463)
18 PRK10262 thioredoxin reductase 100.0 3.6E-32 7.8E-37 262.2 26.5 282 10-349 4-309 (321)
19 PRK06416 dihydrolipoamide dehy 100.0 2.4E-32 5.1E-37 276.4 25.8 296 11-354 3-335 (462)
20 TIGR01423 trypano_reduc trypan 100.0 1.6E-32 3.5E-37 276.2 24.0 308 11-353 2-351 (486)
21 PTZ00058 glutathione reductase 100.0 1.5E-32 3.4E-37 279.0 22.9 302 11-353 47-432 (561)
22 PRK15317 alkyl hydroperoxide r 100.0 1.5E-31 3.2E-36 273.0 29.0 277 11-350 210-507 (517)
23 PRK07818 dihydrolipoamide dehy 100.0 1.9E-31 4.1E-36 269.6 28.5 303 12-354 4-337 (466)
24 PRK13748 putative mercuric red 100.0 8.9E-32 1.9E-36 278.7 26.6 302 11-354 97-429 (561)
25 PRK14727 putative mercuric red 100.0 1.3E-31 2.9E-36 271.1 26.8 304 11-354 15-347 (479)
26 PRK05976 dihydrolipoamide dehy 100.0 1.1E-31 2.5E-36 271.6 26.3 306 9-354 1-344 (472)
27 PRK06292 dihydrolipoamide dehy 100.0 4.8E-32 1E-36 274.1 23.4 298 12-353 3-331 (460)
28 TIGR02053 MerA mercuric reduct 100.0 3E-32 6.6E-37 275.5 21.9 296 13-353 1-329 (463)
29 PRK08010 pyridine nucleotide-d 100.0 5.3E-32 1.2E-36 272.0 23.5 288 12-353 3-317 (441)
30 PLN02546 glutathione reductase 100.0 1.2E-32 2.5E-37 280.1 18.4 291 12-354 79-414 (558)
31 TIGR03143 AhpF_homolog putativ 100.0 2.7E-31 5.8E-36 272.7 28.5 277 10-350 2-304 (555)
32 TIGR03140 AhpF alkyl hydropero 100.0 2.4E-31 5.2E-36 271.1 27.4 279 11-352 211-510 (515)
33 PRK07251 pyridine nucleotide-d 100.0 6.6E-31 1.4E-35 263.9 27.7 282 12-354 3-317 (438)
34 PRK06115 dihydrolipoamide dehy 100.0 4.1E-31 8.9E-36 266.6 26.3 304 12-354 3-339 (466)
35 TIGR01438 TGR thioredoxin and 100.0 9.2E-32 2E-36 271.4 21.4 295 12-353 2-344 (484)
36 PTZ00052 thioredoxin reductase 100.0 8.6E-32 1.9E-36 272.9 20.9 314 10-354 3-342 (499)
37 PRK13512 coenzyme A disulfide 100.0 1.7E-31 3.6E-36 267.5 22.8 280 13-354 2-313 (438)
38 COG0492 TrxB Thioredoxin reduc 100.0 1.3E-30 2.9E-35 244.5 26.9 260 11-334 2-278 (305)
39 PRK06327 dihydrolipoamide dehy 100.0 5.7E-31 1.2E-35 266.4 25.1 301 11-354 3-348 (475)
40 TIGR01350 lipoamide_DH dihydro 100.0 9.2E-31 2E-35 264.9 25.7 294 13-354 2-333 (461)
41 PRK07845 flavoprotein disulfid 100.0 1.1E-30 2.4E-35 263.5 25.9 302 13-354 2-338 (466)
42 TIGR03452 mycothione_red mycot 100.0 2.2E-31 4.9E-36 267.3 20.8 290 12-354 2-329 (452)
43 KOG0405 Pyridine nucleotide-di 100.0 3E-31 6.5E-36 239.9 19.4 306 11-352 19-349 (478)
44 PF13738 Pyr_redox_3: Pyridine 100.0 3.8E-32 8.2E-37 244.7 13.1 194 16-240 1-202 (203)
45 PTZ00153 lipoamide dehydrogena 100.0 1.1E-30 2.4E-35 268.8 21.6 323 12-353 116-495 (659)
46 PRK09564 coenzyme A disulfide 100.0 5.9E-30 1.3E-34 257.9 24.7 278 14-354 2-318 (444)
47 PRK06912 acoL dihydrolipoamide 100.0 7.8E-30 1.7E-34 257.1 24.9 294 14-353 2-330 (458)
48 PRK04965 NADH:flavorubredoxin 100.0 7.9E-30 1.7E-34 251.2 24.0 270 13-354 3-303 (377)
49 PRK09754 phenylpropionate diox 100.0 1.2E-29 2.5E-34 251.4 23.4 274 12-354 3-310 (396)
50 PRK14989 nitrite reductase sub 100.0 1.8E-29 3.9E-34 267.6 23.2 274 13-354 4-311 (847)
51 TIGR02374 nitri_red_nirB nitri 100.0 5.3E-29 1.2E-33 264.5 23.0 271 15-354 1-302 (785)
52 TIGR01316 gltA glutamate synth 100.0 1.2E-28 2.5E-33 247.2 23.7 264 11-352 132-447 (449)
53 KOG1335 Dihydrolipoamide dehyd 100.0 2.5E-29 5.5E-34 230.3 16.4 316 11-354 38-378 (506)
54 KOG2495 NADH-dehydrogenase (ub 100.0 1.7E-29 3.7E-34 235.3 14.3 350 10-429 53-488 (491)
55 PRK12831 putative oxidoreducta 100.0 1.7E-28 3.7E-33 246.4 21.6 268 10-351 138-457 (464)
56 PRK09853 putative selenate red 100.0 3.8E-28 8.2E-33 255.8 24.8 265 11-355 538-842 (1019)
57 PRK11749 dihydropyrimidine deh 100.0 1.4E-27 3.1E-32 240.6 21.0 263 11-351 139-448 (457)
58 PRK12779 putative bifunctional 100.0 4.9E-27 1.1E-31 251.4 23.7 279 11-357 305-629 (944)
59 TIGR03169 Nterm_to_SelD pyridi 100.0 2.1E-27 4.5E-32 233.2 18.9 268 14-351 1-307 (364)
60 PRK12770 putative glutamate sy 100.0 9.6E-27 2.1E-31 226.9 22.5 278 10-353 16-348 (352)
61 PRK12778 putative bifunctional 99.9 9E-27 2E-31 247.7 22.6 265 11-352 430-747 (752)
62 TIGR03315 Se_ygfK putative sel 99.9 4.5E-26 9.8E-31 241.5 23.7 265 11-355 536-840 (1012)
63 PRK12814 putative NADPH-depend 99.9 3.5E-26 7.5E-31 238.6 21.5 262 11-350 192-496 (652)
64 PRK12810 gltD glutamate syntha 99.9 3.1E-25 6.7E-30 224.1 25.0 269 11-350 142-460 (471)
65 PRK12775 putative trifunctiona 99.9 3.3E-25 7.2E-30 239.4 22.3 269 11-350 429-750 (1006)
66 KOG0404 Thioredoxin reductase 99.9 3.7E-25 8E-30 188.9 16.7 266 12-332 8-294 (322)
67 KOG4716 Thioredoxin reductase 99.9 2.7E-25 5.8E-30 200.7 16.1 320 11-353 18-365 (503)
68 KOG1336 Monodehydroascorbate/f 99.9 6.6E-25 1.4E-29 208.7 19.3 249 12-334 74-353 (478)
69 TIGR03385 CoA_CoA_reduc CoA-di 99.9 9.2E-25 2E-29 218.9 21.3 216 108-353 51-304 (427)
70 TIGR01318 gltD_gamma_fam gluta 99.9 4.2E-24 9.1E-29 215.1 24.6 266 11-351 140-462 (467)
71 PRK13984 putative oxidoreducta 99.9 2.4E-24 5.3E-29 224.4 22.3 263 11-351 282-598 (604)
72 TIGR01372 soxA sarcosine oxida 99.9 6.6E-24 1.4E-28 230.8 26.4 283 11-351 162-468 (985)
73 PRK12769 putative oxidoreducta 99.9 5.9E-24 1.3E-28 222.8 23.8 268 11-352 326-649 (654)
74 PRK12809 putative oxidoreducta 99.9 3.9E-23 8.5E-28 215.7 24.2 268 11-352 309-632 (639)
75 TIGR01317 GOGAT_sm_gam glutama 99.9 6.6E-23 1.4E-27 207.2 24.9 268 12-350 143-474 (485)
76 COG3634 AhpF Alkyl hydroperoxi 99.9 1.9E-23 4.2E-28 189.5 17.8 264 11-334 210-492 (520)
77 PF13434 K_oxygenase: L-lysine 99.9 2.2E-24 4.7E-29 207.2 11.2 216 12-240 2-227 (341)
78 PLN02852 ferredoxin-NADP+ redu 99.9 1.3E-22 2.7E-27 202.1 22.2 161 11-239 25-221 (491)
79 PRK12771 putative glutamate sy 99.9 9.9E-23 2.1E-27 210.4 20.2 262 11-350 136-439 (564)
80 COG1251 NirB NAD(P)H-nitrite r 99.9 1.7E-22 3.7E-27 200.8 17.3 274 13-355 4-308 (793)
81 COG3486 IucD Lysine/ornithine 99.9 6.6E-20 1.4E-24 171.3 22.0 323 9-358 2-418 (436)
82 PRK06567 putative bifunctional 99.8 1.7E-17 3.6E-22 173.5 17.5 41 10-50 381-421 (1028)
83 COG0493 GltD NADPH-dependent g 99.7 1.9E-17 4.2E-22 163.5 15.4 261 12-350 123-446 (457)
84 KOG0399 Glutamate synthase [Am 99.7 6.9E-17 1.5E-21 165.2 19.2 288 7-362 1780-2131(2142)
85 COG0446 HcaD Uncharacterized N 99.7 7.3E-17 1.6E-21 161.3 18.2 268 15-353 1-310 (415)
86 PTZ00188 adrenodoxin reductase 99.7 3.6E-16 7.8E-21 153.4 20.7 44 11-54 38-82 (506)
87 KOG1800 Ferredoxin/adrenodoxin 99.7 3.8E-16 8.3E-21 144.2 16.7 164 10-240 18-216 (468)
88 COG4529 Uncharacterized protei 99.6 2.4E-13 5.2E-18 131.2 26.6 203 13-240 2-233 (474)
89 KOG1346 Programmed cell death 99.6 8.8E-16 1.9E-20 143.0 8.6 296 11-359 177-524 (659)
90 COG2081 Predicted flavoprotein 99.6 2.1E-14 4.6E-19 135.0 12.7 150 12-178 3-171 (408)
91 PRK09897 hypothetical protein; 99.6 4.3E-14 9.4E-19 142.9 15.8 198 13-240 2-247 (534)
92 PF07992 Pyr_redox_2: Pyridine 99.6 1.7E-15 3.8E-20 135.8 5.2 153 14-212 1-159 (201)
93 KOG2755 Oxidoreductase [Genera 99.5 1.3E-13 2.7E-18 121.5 11.3 154 14-240 1-167 (334)
94 PF03486 HI0933_like: HI0933-l 99.4 7.3E-14 1.6E-18 137.1 5.9 148 13-178 1-170 (409)
95 COG1148 HdrA Heterodisulfide r 99.4 9.8E-12 2.1E-16 118.7 19.2 41 12-52 124-164 (622)
96 PF13454 NAD_binding_9: FAD-NA 99.4 1E-11 2.2E-16 106.3 13.2 131 16-172 1-155 (156)
97 PRK06847 hypothetical protein; 99.3 1.7E-10 3.8E-15 113.8 18.2 149 10-176 2-165 (375)
98 TIGR00292 thiazole biosynthesi 99.3 4.1E-11 8.9E-16 110.6 11.3 148 12-174 21-170 (254)
99 KOG3851 Sulfide:quinone oxidor 99.2 1.1E-10 2.5E-15 105.8 13.3 258 11-336 38-339 (446)
100 PRK04176 ribulose-1,5-biphosph 99.2 1.1E-10 2.4E-15 108.1 12.4 142 12-174 25-173 (257)
101 TIGR02032 GG-red-SF geranylger 99.2 1.5E-10 3.3E-15 110.1 12.1 140 13-174 1-148 (295)
102 PRK10157 putative oxidoreducta 99.2 5.3E-10 1.2E-14 111.9 15.1 143 12-172 5-162 (428)
103 TIGR02023 BchP-ChlP geranylger 99.2 5E-10 1.1E-14 110.9 14.7 144 13-174 1-155 (388)
104 TIGR01790 carotene-cycl lycope 99.1 5.2E-10 1.1E-14 111.0 13.7 136 14-174 1-141 (388)
105 COG0644 FixC Dehydrogenases (f 99.1 3.7E-10 8.1E-15 112.0 12.0 143 12-172 3-150 (396)
106 PRK06834 hypothetical protein; 99.1 7.7E-10 1.7E-14 112.4 13.8 142 12-174 3-156 (488)
107 COG1635 THI4 Ribulose 1,5-bisp 99.1 5.8E-10 1.3E-14 96.4 10.3 144 12-173 30-177 (262)
108 TIGR00275 flavoprotein, HI0933 99.1 5.8E-10 1.3E-14 110.6 11.9 141 16-176 1-162 (400)
109 PRK06183 mhpA 3-(3-hydroxyphen 99.1 1.8E-09 3.9E-14 111.5 15.6 153 10-176 8-176 (538)
110 PRK07494 2-octaprenyl-6-methox 99.1 8.2E-10 1.8E-14 109.6 12.3 148 10-174 5-167 (388)
111 PF01494 FAD_binding_3: FAD bi 99.1 6.4E-10 1.4E-14 108.6 11.2 148 13-174 2-172 (356)
112 PF05834 Lycopene_cycl: Lycope 99.1 1.6E-09 3.5E-14 106.5 13.4 149 14-191 1-157 (374)
113 PRK08244 hypothetical protein; 99.1 2.5E-09 5.3E-14 109.5 14.6 144 13-174 3-159 (493)
114 PLN02463 lycopene beta cyclase 99.1 1.3E-09 2.8E-14 108.9 12.0 137 12-174 28-169 (447)
115 PRK10015 oxidoreductase; Provi 99.1 3.4E-09 7.5E-14 106.0 15.0 144 12-173 5-163 (429)
116 PRK07364 2-octaprenyl-6-methox 99.1 7.8E-10 1.7E-14 110.8 10.4 149 10-175 16-182 (415)
117 PRK06184 hypothetical protein; 99.0 2.7E-09 5.8E-14 109.4 14.3 149 12-174 3-168 (502)
118 PRK07045 putative monooxygenas 99.0 2.7E-09 5.8E-14 105.8 13.5 148 11-175 4-166 (388)
119 PRK08773 2-octaprenyl-3-methyl 99.0 1.9E-09 4E-14 107.1 12.3 144 11-174 5-169 (392)
120 PRK06126 hypothetical protein; 99.0 6.2E-09 1.3E-13 107.9 16.2 152 12-175 7-189 (545)
121 PRK06185 hypothetical protein; 99.0 3.2E-09 6.9E-14 106.0 13.4 147 11-174 5-169 (407)
122 PRK05329 anaerobic glycerol-3- 99.0 3.9E-09 8.4E-14 104.2 13.3 84 209-292 219-320 (422)
123 PRK07190 hypothetical protein; 99.0 3.6E-09 7.8E-14 107.4 13.2 146 12-174 5-165 (487)
124 COG3380 Predicted NAD/FAD-depe 99.0 2.8E-09 6E-14 95.1 10.7 137 13-171 2-157 (331)
125 TIGR02028 ChlP geranylgeranyl 99.0 5.9E-09 1.3E-13 103.4 14.3 147 13-174 1-160 (398)
126 TIGR01988 Ubi-OHases Ubiquinon 99.0 1.2E-09 2.5E-14 108.3 9.2 141 14-174 1-163 (385)
127 PLN02697 lycopene epsilon cycl 99.0 3.4E-09 7.3E-14 107.6 12.4 135 12-174 108-248 (529)
128 PRK07333 2-octaprenyl-6-methox 99.0 3.3E-09 7.2E-14 105.7 12.3 140 13-174 2-167 (403)
129 PF01946 Thi4: Thi4 family; PD 99.0 3.2E-10 6.9E-15 98.7 4.1 144 11-172 16-163 (230)
130 PRK08163 salicylate hydroxylas 99.0 3.1E-09 6.6E-14 105.8 11.8 148 12-176 4-168 (396)
131 PRK07538 hypothetical protein; 99.0 1.9E-08 4E-13 100.7 17.1 152 13-176 1-167 (413)
132 PRK08020 ubiF 2-octaprenyl-3-m 99.0 4E-09 8.7E-14 104.7 11.7 144 11-174 4-169 (391)
133 PRK08013 oxidoreductase; Provi 99.0 7.5E-09 1.6E-13 103.0 13.3 147 12-175 3-169 (400)
134 PRK05714 2-octaprenyl-3-methyl 99.0 8E-09 1.7E-13 103.1 13.3 146 13-175 3-169 (405)
135 PRK11445 putative oxidoreducta 99.0 2.2E-08 4.7E-13 97.9 15.9 146 13-175 2-158 (351)
136 PRK09126 hypothetical protein; 98.9 2.8E-09 6.1E-14 105.9 9.7 34 13-46 4-37 (392)
137 PRK07588 hypothetical protein; 98.9 4.8E-09 1E-13 104.2 11.3 145 13-176 1-160 (391)
138 PRK06753 hypothetical protein; 98.9 5.9E-09 1.3E-13 102.9 11.8 139 14-175 2-153 (373)
139 PF00070 Pyr_redox: Pyridine n 98.9 1.5E-08 3.3E-13 76.1 11.3 71 14-134 1-71 (80)
140 PRK07608 ubiquinone biosynthes 98.9 1E-08 2.2E-13 101.8 13.5 144 12-174 5-167 (388)
141 PLN02661 Putative thiazole syn 98.9 8.8E-09 1.9E-13 97.9 11.2 142 12-172 92-242 (357)
142 PRK08850 2-octaprenyl-6-methox 98.9 1E-08 2.3E-13 102.2 12.4 33 12-44 4-36 (405)
143 PRK08132 FAD-dependent oxidore 98.9 1.7E-08 3.7E-13 104.5 14.4 147 11-174 22-185 (547)
144 PRK07236 hypothetical protein; 98.9 9.5E-09 2.1E-13 101.8 11.8 147 12-177 6-157 (386)
145 PRK08849 2-octaprenyl-3-methyl 98.9 1.5E-08 3.4E-13 100.2 13.2 143 13-175 4-168 (384)
146 COG0654 UbiH 2-polyprenyl-6-me 98.9 1.8E-08 3.9E-13 99.8 12.8 144 12-175 2-163 (387)
147 PF12831 FAD_oxidored: FAD dep 98.9 4.7E-10 1E-14 112.2 1.3 141 14-172 1-148 (428)
148 TIGR01984 UbiH 2-polyprenyl-6- 98.9 1.6E-08 3.5E-13 100.1 12.1 144 14-174 1-162 (382)
149 PRK08274 tricarballylate dehyd 98.9 2.1E-08 4.5E-13 101.9 13.0 153 10-174 2-192 (466)
150 PRK05732 2-octaprenyl-6-methox 98.9 2.1E-08 4.5E-13 99.8 12.3 146 12-174 3-169 (395)
151 PRK05192 tRNA uridine 5-carbox 98.9 2.5E-08 5.3E-13 101.6 12.8 39 11-49 3-42 (618)
152 TIGR01813 flavo_cyto_c flavocy 98.8 3.3E-08 7.1E-13 99.7 13.0 150 14-175 1-193 (439)
153 PRK12266 glpD glycerol-3-phosp 98.8 6.4E-08 1.4E-12 99.0 15.1 41 9-49 3-43 (508)
154 PLN00093 geranylgeranyl diphos 98.8 3.9E-08 8.4E-13 98.8 13.2 147 11-174 38-199 (450)
155 TIGR03219 salicylate_mono sali 98.8 3E-08 6.6E-13 99.2 12.5 140 14-175 2-160 (414)
156 TIGR01789 lycopene_cycl lycope 98.8 4.2E-08 9.2E-13 96.2 13.0 144 14-193 1-155 (370)
157 PRK06617 2-octaprenyl-6-methox 98.8 3.4E-08 7.4E-13 97.4 12.2 141 13-176 2-162 (374)
158 TIGR01989 COQ6 Ubiquinone bios 98.8 3.8E-08 8.2E-13 99.1 12.1 154 13-176 1-185 (437)
159 PRK06996 hypothetical protein; 98.8 4.9E-08 1.1E-12 97.1 12.6 143 10-172 9-172 (398)
160 PRK06481 fumarate reductase fl 98.8 9.9E-08 2.1E-12 97.7 15.0 40 11-50 60-99 (506)
161 PRK06475 salicylate hydroxylas 98.8 3.3E-08 7.1E-13 98.5 11.3 150 13-176 3-169 (400)
162 PF13450 NAD_binding_8: NAD(P) 98.8 7.5E-09 1.6E-13 74.7 4.9 37 17-53 1-37 (68)
163 PRK05976 dihydrolipoamide dehy 98.8 2.3E-07 5E-12 94.4 17.4 145 12-225 180-330 (472)
164 PRK08243 4-hydroxybenzoate 3-m 98.8 5E-08 1.1E-12 96.9 12.2 149 13-177 3-166 (392)
165 PRK07121 hypothetical protein; 98.8 5.9E-08 1.3E-12 99.2 12.7 41 11-51 19-59 (492)
166 PRK05868 hypothetical protein; 98.8 4.4E-08 9.4E-13 96.4 11.2 35 13-47 2-36 (372)
167 PF01266 DAO: FAD dependent ox 98.8 4.3E-08 9.4E-13 95.7 11.0 59 98-174 144-203 (358)
168 TIGR01350 lipoamide_DH dihydro 98.8 2E-07 4.2E-12 94.7 16.1 103 12-179 170-272 (461)
169 COG1249 Lpd Pyruvate/2-oxoglut 98.8 1.5E-07 3.2E-12 93.6 14.4 105 12-181 173-277 (454)
170 PRK08294 phenol 2-monooxygenas 98.8 1.9E-07 4.1E-12 97.9 15.8 157 9-176 29-212 (634)
171 PRK09078 sdhA succinate dehydr 98.8 8.8E-08 1.9E-12 99.8 13.1 48 1-49 2-49 (598)
172 PF00890 FAD_binding_2: FAD bi 98.7 1.6E-07 3.5E-12 94.1 14.4 151 14-175 1-204 (417)
173 COG0579 Predicted dehydrogenas 98.7 1E-07 2.2E-12 93.1 11.9 63 99-176 151-213 (429)
174 TIGR02360 pbenz_hydroxyl 4-hyd 98.7 8E-08 1.7E-12 95.2 11.2 149 13-176 3-165 (390)
175 PF00070 Pyr_redox: Pyridine n 98.7 2.1E-08 4.5E-13 75.3 5.2 68 207-274 1-80 (80)
176 PRK06416 dihydrolipoamide dehy 98.7 5E-07 1.1E-11 91.7 16.8 105 12-180 172-276 (462)
177 PRK13369 glycerol-3-phosphate 98.7 2.1E-07 4.5E-12 95.3 13.8 62 101-175 155-216 (502)
178 PRK08401 L-aspartate oxidase; 98.7 1.9E-07 4.1E-12 94.6 13.3 35 13-47 2-36 (466)
179 PRK11728 hydroxyglutarate oxid 98.7 2.4E-07 5.2E-12 92.0 13.1 36 13-48 3-40 (393)
180 PRK13339 malate:quinone oxidor 98.7 5.3E-07 1.1E-11 90.9 15.3 38 11-48 5-44 (497)
181 PRK07251 pyridine nucleotide-d 98.7 3E-07 6.4E-12 92.7 13.6 100 12-179 157-256 (438)
182 PRK12409 D-amino acid dehydrog 98.7 4.2E-07 9.2E-12 90.8 14.5 35 13-47 2-36 (410)
183 PRK06912 acoL dihydrolipoamide 98.7 8.5E-07 1.9E-11 89.8 16.8 102 12-179 170-271 (458)
184 PRK06116 glutathione reductase 98.7 4E-07 8.6E-12 92.1 14.1 102 12-179 167-268 (450)
185 PRK06854 adenylylsulfate reduc 98.6 2.1E-07 4.5E-12 97.1 12.1 36 12-47 11-48 (608)
186 PRK11259 solA N-methyltryptoph 98.6 2.8E-07 6.1E-12 91.0 12.5 35 12-46 3-37 (376)
187 PRK06175 L-aspartate oxidase; 98.6 1.3E-07 2.8E-12 94.8 10.0 39 11-50 3-41 (433)
188 PRK07804 L-aspartate oxidase; 98.6 2.3E-07 5E-12 95.6 12.0 155 11-175 15-211 (541)
189 PRK07803 sdhA succinate dehydr 98.6 2.1E-07 4.6E-12 97.4 11.8 37 12-48 8-44 (626)
190 PRK06327 dihydrolipoamide dehy 98.6 1.5E-06 3.2E-11 88.5 17.6 105 12-179 183-287 (475)
191 PRK04965 NADH:flavorubredoxin 98.6 3.7E-07 8E-12 90.2 12.9 102 11-178 140-241 (377)
192 PRK12839 hypothetical protein; 98.6 3.5E-07 7.6E-12 94.7 13.1 47 9-55 5-51 (572)
193 PRK08958 sdhA succinate dehydr 98.6 2.7E-07 5.9E-12 95.8 12.2 38 12-49 7-44 (588)
194 TIGR01377 soxA_mon sarcosine o 98.6 4.1E-07 8.9E-12 89.9 13.0 58 99-174 143-200 (380)
195 PRK07057 sdhA succinate dehydr 98.6 3.3E-07 7.2E-12 95.4 12.8 38 12-49 12-49 (591)
196 PRK06115 dihydrolipoamide dehy 98.6 7E-07 1.5E-11 90.6 14.8 106 12-179 174-279 (466)
197 TIGR02053 MerA mercuric reduct 98.6 7.4E-07 1.6E-11 90.5 14.8 105 12-180 166-270 (463)
198 KOG1335 Dihydrolipoamide dehyd 98.6 7.6E-07 1.7E-11 83.4 13.3 152 12-229 211-368 (506)
199 PRK05249 soluble pyridine nucl 98.6 5.4E-07 1.2E-11 91.5 13.8 101 12-179 175-275 (461)
200 PRK09754 phenylpropionate diox 98.6 4E-07 8.6E-12 90.5 12.5 100 12-178 144-243 (396)
201 PLN02927 antheraxanthin epoxid 98.6 5E-07 1.1E-11 93.7 13.3 36 10-45 79-114 (668)
202 PRK07818 dihydrolipoamide dehy 98.6 1.8E-06 3.9E-11 87.7 17.3 105 12-179 172-276 (466)
203 PRK06452 sdhA succinate dehydr 98.6 4.7E-07 1E-11 93.8 13.2 152 12-174 5-198 (566)
204 PRK12845 3-ketosteroid-delta-1 98.6 2.7E-07 5.9E-12 95.2 11.4 44 11-55 15-58 (564)
205 TIGR01812 sdhA_frdA_Gneg succi 98.6 3E-07 6.6E-12 95.6 11.7 36 14-49 1-36 (566)
206 PRK13977 myosin-cross-reactive 98.6 6.6E-07 1.4E-11 90.4 13.4 42 11-52 21-66 (576)
207 TIGR01424 gluta_reduc_2 glutat 98.6 6.8E-07 1.5E-11 90.2 13.7 101 12-179 166-266 (446)
208 PF01134 GIDA: Glucose inhibit 98.6 2.9E-07 6.3E-12 89.0 10.2 127 14-172 1-150 (392)
209 PRK07573 sdhA succinate dehydr 98.6 4.3E-07 9.4E-12 95.2 12.4 37 12-48 35-71 (640)
210 TIGR01320 mal_quin_oxido malat 98.6 6E-07 1.3E-11 91.0 12.8 65 99-174 176-240 (483)
211 PTZ00139 Succinate dehydrogena 98.6 4.7E-07 1E-11 94.6 12.2 155 12-176 29-231 (617)
212 PLN00128 Succinate dehydrogena 98.6 6.1E-07 1.3E-11 93.8 13.0 155 12-176 50-252 (635)
213 PRK06370 mercuric reductase; V 98.6 1.1E-06 2.4E-11 89.3 14.5 104 12-179 171-274 (463)
214 PLN02985 squalene monooxygenas 98.6 1.6E-06 3.4E-11 88.7 15.6 36 11-46 42-77 (514)
215 TIGR00551 nadB L-aspartate oxi 98.6 5.1E-07 1.1E-11 92.1 12.0 149 13-175 3-190 (488)
216 PRK08275 putative oxidoreducta 98.6 4.6E-07 1E-11 93.8 11.8 153 12-174 9-200 (554)
217 PRK12835 3-ketosteroid-delta-1 98.6 4.3E-07 9.2E-12 94.4 11.5 45 7-51 6-50 (584)
218 TIGR03329 Phn_aa_oxid putative 98.6 3.9E-07 8.6E-12 92.3 10.9 34 12-45 24-59 (460)
219 PRK01747 mnmC bifunctional tRN 98.6 6.1E-07 1.3E-11 95.1 12.7 35 13-47 261-295 (662)
220 TIGR01421 gluta_reduc_1 glutat 98.6 9.1E-07 2E-11 89.3 13.4 103 12-179 166-268 (450)
221 PTZ00383 malate:quinone oxidor 98.6 5.7E-07 1.2E-11 91.0 11.9 62 99-175 209-274 (497)
222 TIGR00136 gidA glucose-inhibit 98.6 8.5E-07 1.8E-11 90.4 13.0 145 13-174 1-154 (617)
223 PRK11101 glpA sn-glycerol-3-ph 98.5 6.1E-07 1.3E-11 92.6 12.3 35 12-46 6-40 (546)
224 PRK05945 sdhA succinate dehydr 98.5 3.9E-07 8.6E-12 94.7 10.8 38 12-49 3-42 (575)
225 PRK08255 salicylyl-CoA 5-hydro 98.5 9E-08 2E-12 102.6 6.2 110 14-129 2-123 (765)
226 PRK08205 sdhA succinate dehydr 98.5 7.3E-07 1.6E-11 92.8 12.6 37 12-49 5-41 (583)
227 TIGR03385 CoA_CoA_reduc CoA-di 98.5 9.8E-07 2.1E-11 88.7 13.0 100 12-179 137-236 (427)
228 PRK06134 putative FAD-binding 98.5 9.4E-07 2E-11 92.0 13.1 45 10-54 10-54 (581)
229 PRK06263 sdhA succinate dehydr 98.5 4.5E-07 9.8E-12 93.7 10.4 152 12-174 7-197 (543)
230 PLN02507 glutathione reductase 98.5 1.4E-06 2.9E-11 89.1 13.8 101 12-179 203-303 (499)
231 PRK08641 sdhA succinate dehydr 98.5 1.1E-06 2.4E-11 91.4 13.2 38 12-49 3-40 (589)
232 PRK07846 mycothione reductase; 98.5 1.3E-06 2.8E-11 88.2 13.2 101 12-180 166-266 (451)
233 PRK06467 dihydrolipoamide dehy 98.5 1.6E-06 3.5E-11 88.1 13.9 104 12-179 174-277 (471)
234 PRK07845 flavoprotein disulfid 98.5 1.5E-06 3.3E-11 88.1 13.6 100 13-179 178-277 (466)
235 PRK13512 coenzyme A disulfide 98.5 9.1E-07 2E-11 89.1 11.9 97 12-179 148-244 (438)
236 COG0578 GlpA Glycerol-3-phosph 98.5 2E-06 4.4E-11 86.0 13.7 40 11-50 11-50 (532)
237 PRK05257 malate:quinone oxidor 98.5 2.7E-06 5.9E-11 86.4 14.7 65 100-175 182-247 (494)
238 PRK06069 sdhA succinate dehydr 98.5 5.6E-07 1.2E-11 93.7 9.9 39 12-50 5-46 (577)
239 KOG0029 Amine oxidase [Seconda 98.5 1.6E-07 3.4E-12 94.7 5.4 42 11-52 14-55 (501)
240 TIGR03452 mycothione_red mycot 98.5 2.2E-06 4.8E-11 86.6 13.2 100 12-179 169-268 (452)
241 PRK08010 pyridine nucleotide-d 98.5 2.6E-06 5.6E-11 86.0 13.7 100 12-179 158-257 (441)
242 KOG2415 Electron transfer flav 98.5 1.5E-06 3.3E-11 82.3 10.9 121 11-133 75-213 (621)
243 TIGR03364 HpnW_proposed FAD de 98.4 1.6E-06 3.5E-11 85.2 11.8 34 13-46 1-34 (365)
244 PRK07843 3-ketosteroid-delta-1 98.4 4.3E-06 9.4E-11 86.6 15.4 44 11-54 6-49 (557)
245 TIGR01423 trypano_reduc trypan 98.4 2.6E-06 5.7E-11 86.5 13.5 102 12-179 187-291 (486)
246 PRK09564 coenzyme A disulfide 98.4 2.1E-06 4.6E-11 86.8 12.9 101 12-179 149-249 (444)
247 PRK12834 putative FAD-binding 98.4 1.7E-06 3.7E-11 89.6 12.4 42 10-51 2-45 (549)
248 TIGR01811 sdhA_Bsu succinate d 98.4 1.6E-06 3.4E-11 90.4 11.9 34 15-48 1-34 (603)
249 COG1252 Ndh NADH dehydrogenase 98.4 2.1E-06 4.5E-11 83.5 11.8 131 13-214 156-300 (405)
250 PRK06292 dihydrolipoamide dehy 98.4 3.8E-06 8.2E-11 85.3 14.0 104 12-180 169-272 (460)
251 PRK08071 L-aspartate oxidase; 98.4 1.4E-06 3E-11 89.2 10.6 38 12-50 3-40 (510)
252 PRK07208 hypothetical protein; 98.4 2.9E-07 6.4E-12 93.9 5.7 43 10-52 2-44 (479)
253 PTZ00058 glutathione reductase 98.4 4.2E-06 9.1E-11 86.1 13.9 103 12-179 237-339 (561)
254 PRK12842 putative succinate de 98.4 1.1E-05 2.3E-10 84.1 17.0 40 12-51 9-48 (574)
255 PRK12844 3-ketosteroid-delta-1 98.4 2.8E-06 6.1E-11 87.9 12.6 43 12-54 6-48 (557)
256 PLN02464 glycerol-3-phosphate 98.4 2.5E-06 5.4E-11 89.3 12.3 39 11-49 70-108 (627)
257 COG0562 Glf UDP-galactopyranos 98.4 9.4E-07 2E-11 81.1 7.7 42 13-54 2-43 (374)
258 PLN02815 L-aspartate oxidase 98.4 1.8E-06 4E-11 89.5 11.0 37 12-49 29-65 (594)
259 TIGR01176 fum_red_Fp fumarate 98.4 2.4E-06 5.2E-11 88.7 11.8 39 12-50 3-43 (580)
260 COG1233 Phytoene dehydrogenase 98.4 3.5E-07 7.6E-12 93.0 5.4 42 12-53 3-44 (487)
261 PRK09231 fumarate reductase fl 98.4 2.1E-06 4.5E-11 89.3 11.1 39 12-50 4-44 (582)
262 PRK00711 D-amino acid dehydrog 98.4 5.6E-06 1.2E-10 82.9 13.9 34 14-47 2-35 (416)
263 COG0446 HcaD Uncharacterized N 98.4 3.6E-06 7.9E-11 84.0 12.4 101 12-177 136-238 (415)
264 PRK14727 putative mercuric red 98.4 5.5E-06 1.2E-10 84.4 13.7 99 12-179 188-286 (479)
265 PRK07512 L-aspartate oxidase; 98.4 1.7E-06 3.6E-11 88.7 9.8 41 1-46 1-41 (513)
266 PRK08626 fumarate reductase fl 98.4 3.4E-06 7.4E-11 88.7 12.1 37 12-48 5-41 (657)
267 PRK09077 L-aspartate oxidase; 98.4 3.5E-06 7.5E-11 86.9 11.9 38 12-50 8-45 (536)
268 PRK14694 putative mercuric red 98.3 6.9E-06 1.5E-10 83.5 13.8 99 12-179 178-276 (468)
269 PRK12843 putative FAD-binding 98.3 4.8E-06 1E-10 86.7 12.7 44 11-54 15-58 (578)
270 PTZ00153 lipoamide dehydrogena 98.3 8.6E-06 1.9E-10 85.1 13.9 109 12-180 312-431 (659)
271 PRK07395 L-aspartate oxidase; 98.3 2.1E-06 4.6E-11 88.6 9.2 39 11-50 8-46 (553)
272 PF04820 Trp_halogenase: Trypt 98.3 1.7E-06 3.8E-11 87.0 8.3 59 98-172 151-209 (454)
273 PTZ00052 thioredoxin reductase 98.3 8.5E-06 1.9E-10 83.3 13.4 100 12-179 182-281 (499)
274 PLN02546 glutathione reductase 98.3 8.2E-06 1.8E-10 84.0 13.2 102 12-179 252-353 (558)
275 PTZ00306 NADH-dependent fumara 98.3 6E-06 1.3E-10 92.4 13.2 41 11-51 408-448 (1167)
276 TIGR01438 TGR thioredoxin and 98.3 1E-05 2.2E-10 82.4 13.7 103 12-179 180-282 (484)
277 PRK13748 putative mercuric red 98.3 8.3E-06 1.8E-10 85.0 13.3 99 12-179 270-368 (561)
278 PF06039 Mqo: Malate:quinone o 98.3 1.3E-05 2.8E-10 78.0 13.3 63 103-176 183-246 (488)
279 TIGR01373 soxB sarcosine oxida 98.3 1.1E-05 2.5E-10 80.4 13.5 35 11-45 29-65 (407)
280 PRK14989 nitrite reductase sub 98.3 8.1E-06 1.7E-10 88.0 12.8 103 12-178 145-247 (847)
281 TIGR02061 aprA adenosine phosp 98.3 6.1E-06 1.3E-10 85.7 11.5 33 14-46 1-37 (614)
282 KOG2404 Fumarate reductase, fl 98.3 1E-05 2.2E-10 74.3 11.2 151 14-175 11-207 (477)
283 PRK12837 3-ketosteroid-delta-1 98.3 7.5E-06 1.6E-10 84.0 11.9 39 12-51 7-45 (513)
284 COG0665 DadA Glycine/D-amino a 98.3 9.5E-06 2.1E-10 80.4 12.3 37 11-47 3-39 (387)
285 KOG2820 FAD-dependent oxidored 98.3 1.1E-05 2.3E-10 74.8 11.4 158 9-180 4-218 (399)
286 PRK11883 protoporphyrinogen ox 98.2 1E-06 2.3E-11 89.2 5.2 40 13-52 1-42 (451)
287 PLN02268 probable polyamine ox 98.2 1.1E-06 2.4E-11 88.6 5.3 40 13-52 1-40 (435)
288 TIGR02374 nitri_red_nirB nitri 98.2 7.9E-06 1.7E-10 88.0 12.1 102 12-179 140-241 (785)
289 PLN02568 polyamine oxidase 98.2 1.3E-06 2.8E-11 89.6 5.5 44 11-54 4-52 (539)
290 PTZ00318 NADH dehydrogenase-li 98.2 1.4E-05 3E-10 80.2 12.3 94 13-177 174-281 (424)
291 PRK10262 thioredoxin reductase 98.2 1.8E-05 4E-10 76.3 12.8 105 12-179 146-251 (321)
292 TIGR02485 CobZ_N-term precorri 98.2 8.8E-06 1.9E-10 81.9 10.9 145 17-174 1-183 (432)
293 KOG0685 Flavin-containing amin 98.2 1.8E-06 3.8E-11 83.6 5.4 44 10-53 19-63 (498)
294 COG1232 HemY Protoporphyrinoge 98.2 1.9E-06 4.2E-11 84.9 5.7 39 14-52 2-42 (444)
295 PRK07233 hypothetical protein; 98.2 1.8E-06 3.9E-11 86.9 5.3 39 14-52 1-39 (434)
296 TIGR00031 UDP-GALP_mutase UDP- 98.2 2.3E-06 4.9E-11 83.4 5.4 40 13-52 2-41 (377)
297 TIGR03140 AhpF alkyl hydropero 98.2 1.9E-05 4.1E-10 81.2 12.3 101 12-179 352-453 (515)
298 PLN02576 protoporphyrinogen ox 98.2 2.3E-06 5E-11 87.8 5.6 42 11-52 11-53 (496)
299 TIGR00562 proto_IX_ox protopor 98.2 2.2E-06 4.8E-11 87.1 5.3 40 13-52 3-46 (462)
300 TIGR02733 desat_CrtD C-3',4' d 98.1 2.5E-06 5.5E-11 87.3 5.4 41 13-53 2-42 (492)
301 PTZ00367 squalene epoxidase; P 98.1 2.1E-05 4.5E-10 81.1 12.0 35 11-45 32-66 (567)
302 COG3349 Uncharacterized conser 98.1 2.4E-06 5.3E-11 84.1 4.9 41 13-53 1-41 (485)
303 COG2509 Uncharacterized FAD-de 98.1 3.2E-05 6.9E-10 74.7 12.1 57 101-173 173-229 (486)
304 PRK13800 putative oxidoreducta 98.1 1.5E-05 3.1E-10 87.3 11.1 35 12-46 13-47 (897)
305 PF13434 K_oxygenase: L-lysine 98.1 1E-05 2.2E-10 78.3 8.5 137 11-171 189-338 (341)
306 TIGR00137 gid_trmFO tRNA:m(5)U 98.1 1.5E-05 3.2E-10 78.6 9.5 36 14-49 2-37 (433)
307 COG0445 GidA Flavin-dependent 98.1 1.2E-05 2.7E-10 79.1 8.9 45 11-55 3-47 (621)
308 KOG2614 Kynurenine 3-monooxyge 98.1 1.4E-05 3.1E-10 76.2 9.1 36 12-47 2-37 (420)
309 TIGR01292 TRX_reduct thioredox 98.1 3.8E-05 8.2E-10 73.1 12.2 99 12-178 141-240 (300)
310 COG1053 SdhA Succinate dehydro 98.1 4.8E-05 1E-09 78.1 13.4 39 10-48 4-42 (562)
311 TIGR02734 crtI_fam phytoene de 98.1 3.1E-06 6.6E-11 87.0 4.6 39 15-53 1-39 (502)
312 KOG1336 Monodehydroascorbate/f 98.1 3.5E-05 7.6E-10 74.9 11.3 107 12-182 213-319 (478)
313 TIGR03169 Nterm_to_SelD pyridi 98.1 1.1E-05 2.4E-10 79.3 8.0 89 207-296 1-113 (364)
314 TIGR02730 carot_isom carotene 98.0 4.8E-06 1E-10 85.3 5.3 41 13-53 1-41 (493)
315 COG2081 Predicted flavoprotein 98.0 1.2E-05 2.5E-10 76.8 7.4 84 206-289 4-166 (408)
316 PRK12416 protoporphyrinogen ox 98.0 4.5E-06 9.7E-11 84.9 5.1 40 13-52 2-47 (463)
317 PRK15317 alkyl hydroperoxide r 98.0 5E-05 1.1E-09 78.2 12.6 101 12-179 351-452 (517)
318 PLN02676 polyamine oxidase 98.0 6.5E-06 1.4E-10 83.7 5.5 44 11-54 25-69 (487)
319 TIGR02731 phytoene_desat phyto 98.0 6.5E-06 1.4E-10 83.4 5.3 39 14-52 1-39 (453)
320 PTZ00363 rab-GDP dissociation 98.0 6.1E-06 1.3E-10 82.4 4.8 44 9-52 1-44 (443)
321 COG1231 Monoamine oxidase [Ami 98.0 8.6E-06 1.9E-10 78.9 5.6 42 11-52 6-47 (450)
322 PLN02529 lysine-specific histo 98.0 9.3E-06 2E-10 85.5 5.5 43 11-53 159-201 (738)
323 PF13738 Pyr_redox_3: Pyridine 97.9 1.8E-05 3.9E-10 70.7 5.8 87 209-295 1-145 (203)
324 PF01134 GIDA: Glucose inhibit 97.9 3.8E-05 8.1E-10 74.5 7.3 82 207-288 1-150 (392)
325 TIGR02732 zeta_caro_desat caro 97.8 1.8E-05 4E-10 80.3 5.3 39 14-52 1-39 (474)
326 PF07992 Pyr_redox_2: Pyridine 97.8 1E-05 2.3E-10 72.1 2.8 88 207-294 1-126 (201)
327 PLN02328 lysine-specific histo 97.8 2.2E-05 4.8E-10 83.1 5.6 42 11-52 237-278 (808)
328 TIGR03862 flavo_PP4765 unchara 97.8 4.7E-05 1E-09 74.1 7.3 126 35-178 1-145 (376)
329 KOG1298 Squalene monooxygenase 97.8 8.6E-05 1.9E-09 70.0 8.7 34 11-44 44-77 (509)
330 PRK12770 putative glutamate sy 97.8 0.00015 3.3E-09 70.8 10.6 34 12-45 172-206 (352)
331 COG2907 Predicted NAD/FAD-bind 97.8 2.1E-05 4.4E-10 73.2 3.9 40 12-52 8-47 (447)
332 PLN02487 zeta-carotene desatur 97.8 2.9E-05 6.4E-10 79.9 5.4 41 12-52 75-115 (569)
333 TIGR01316 gltA glutamate synth 97.8 0.00038 8.3E-09 70.3 13.1 34 12-45 272-305 (449)
334 PRK06847 hypothetical protein; 97.7 8.8E-05 1.9E-09 73.2 8.0 35 205-239 4-38 (375)
335 PRK11749 dihydropyrimidine deh 97.7 0.00049 1.1E-08 69.8 13.0 35 11-45 272-307 (457)
336 PRK01438 murD UDP-N-acetylmura 97.7 5.8E-05 1.3E-09 77.1 6.2 34 12-45 16-49 (480)
337 PF03486 HI0933_like: HI0933-l 97.7 4.7E-05 1E-09 75.3 5.3 34 207-240 2-35 (409)
338 TIGR03143 AhpF_homolog putativ 97.7 0.00032 7E-09 72.8 11.7 34 12-45 143-176 (555)
339 PRK12831 putative oxidoreducta 97.7 0.00058 1.3E-08 69.2 13.3 35 11-45 280-314 (464)
340 PLN03000 amine oxidase 97.7 5.1E-05 1.1E-09 80.6 5.6 44 11-54 183-226 (881)
341 PLN02612 phytoene desaturase 97.7 5.4E-05 1.2E-09 78.6 5.5 42 11-52 92-133 (567)
342 KOG2495 NADH-dehydrogenase (ub 97.7 8.1E-05 1.8E-09 71.3 5.9 101 13-178 219-333 (491)
343 PRK05335 tRNA (uracil-5-)-meth 97.6 6.3E-05 1.4E-09 73.7 5.2 35 13-47 3-37 (436)
344 COG0029 NadB Aspartate oxidase 97.6 0.00015 3.4E-09 70.9 7.6 32 14-46 9-40 (518)
345 PLN02976 amine oxidase 97.6 6.6E-05 1.4E-09 82.6 5.3 43 12-54 693-735 (1713)
346 TIGR02462 pyranose_ox pyranose 97.6 7E-05 1.5E-09 76.4 5.2 40 13-52 1-40 (544)
347 PRK05868 hypothetical protein; 97.6 0.00019 4.1E-09 70.7 8.1 35 206-240 2-36 (372)
348 PRK07236 hypothetical protein; 97.6 0.00019 4.2E-09 71.1 8.2 87 205-291 6-155 (386)
349 PRK06753 hypothetical protein; 97.6 0.00019 4.1E-09 70.8 7.6 85 207-291 2-153 (373)
350 KOG0042 Glycerol-3-phosphate d 97.5 0.00012 2.7E-09 71.9 5.5 40 12-51 67-106 (680)
351 PRK07588 hypothetical protein; 97.5 0.00025 5.4E-09 70.4 7.7 34 207-240 2-35 (391)
352 PLN02463 lycopene beta cyclase 97.5 0.00027 5.9E-09 70.9 7.9 33 206-238 29-61 (447)
353 PRK12779 putative bifunctional 97.5 0.00013 2.9E-09 79.6 5.6 83 204-291 305-406 (944)
354 KOG2853 Possible oxidoreductas 97.5 0.0014 3.1E-08 61.0 11.2 44 11-54 85-141 (509)
355 PRK09853 putative selenate red 97.5 0.00018 3.9E-09 77.9 6.3 82 203-291 537-636 (1019)
356 TIGR01789 lycopene_cycl lycope 97.4 0.00056 1.2E-08 67.2 8.9 83 207-290 1-138 (370)
357 PRK12778 putative bifunctional 97.4 0.0044 9.5E-08 66.9 16.5 34 12-45 570-604 (752)
358 KOG1276 Protoporphyrinogen oxi 97.4 0.00017 3.8E-09 69.0 5.0 42 11-52 10-53 (491)
359 COG2072 TrkA Predicted flavopr 97.4 0.00063 1.4E-08 68.4 9.3 35 206-240 9-44 (443)
360 PRK08163 salicylate hydroxylas 97.4 0.00042 9.1E-09 68.9 8.0 36 205-240 4-39 (396)
361 PF00743 FMO-like: Flavin-bind 97.4 0.00024 5.2E-09 72.8 6.1 35 206-240 2-36 (531)
362 PF00732 GMC_oxred_N: GMC oxid 97.4 0.00012 2.7E-09 69.6 3.7 36 13-48 1-37 (296)
363 TIGR00292 thiazole biosynthesi 97.4 0.00062 1.3E-08 63.0 7.7 36 205-240 21-56 (254)
364 PF13454 NAD_binding_9: FAD-NA 97.4 0.00082 1.8E-08 57.3 7.9 30 209-238 1-35 (156)
365 KOG2844 Dimethylglycine dehydr 97.4 0.0005 1.1E-08 69.4 7.3 58 100-174 186-243 (856)
366 PF06100 Strep_67kDa_ant: Stre 97.3 0.0025 5.3E-08 63.2 12.0 43 12-54 2-48 (500)
367 TIGR01318 gltD_gamma_fam gluta 97.3 0.0091 2E-07 60.7 16.7 34 12-45 282-316 (467)
368 PRK12810 gltD glutamate syntha 97.3 0.0022 4.8E-08 65.2 11.7 34 12-45 281-315 (471)
369 PRK12814 putative NADPH-depend 97.3 0.0083 1.8E-07 63.6 16.2 35 11-45 322-357 (652)
370 PRK02106 choline dehydrogenase 97.3 0.00027 5.8E-09 73.6 4.9 35 11-45 4-39 (560)
371 PF05834 Lycopene_cycl: Lycope 97.3 0.00083 1.8E-08 66.2 7.8 84 208-291 2-143 (374)
372 PRK08773 2-octaprenyl-3-methyl 97.2 0.00071 1.5E-08 67.2 7.2 33 206-238 7-39 (392)
373 PLN02852 ferredoxin-NADP+ redu 97.2 0.00016 3.5E-09 73.0 2.4 37 204-240 25-63 (491)
374 PRK12769 putative oxidoreducta 97.2 0.0043 9.2E-08 65.9 13.2 34 12-45 468-502 (654)
375 KOG1399 Flavin-containing mono 97.2 0.0011 2.3E-08 66.1 8.0 36 205-240 6-41 (448)
376 KOG3851 Sulfide:quinone oxidor 97.2 0.00045 9.7E-09 63.7 4.7 91 206-296 40-151 (446)
377 PRK06834 hypothetical protein; 97.2 0.00098 2.1E-08 68.0 7.7 34 206-239 4-37 (488)
378 TIGR03219 salicylate_mono sali 97.2 0.0011 2.3E-08 66.5 7.7 34 207-240 2-36 (414)
379 COG0654 UbiH 2-polyprenyl-6-me 97.1 0.0012 2.6E-08 65.5 7.5 32 206-237 3-34 (387)
380 PRK09126 hypothetical protein; 97.1 0.0012 2.6E-08 65.5 7.6 34 206-239 4-37 (392)
381 TIGR01790 carotene-cycl lycope 97.1 0.0013 2.9E-08 65.2 7.8 33 207-239 1-33 (388)
382 COG3486 IucD Lysine/ornithine 97.1 0.01 2.3E-07 57.0 13.2 55 120-185 295-350 (436)
383 COG1635 THI4 Ribulose 1,5-bisp 97.1 0.0025 5.4E-08 56.0 8.3 40 201-240 26-65 (262)
384 PRK05192 tRNA uridine 5-carbox 97.1 0.0012 2.5E-08 68.0 7.4 32 207-238 6-37 (618)
385 PLN02172 flavin-containing mon 97.1 0.0015 3.4E-08 65.9 8.1 35 11-45 203-237 (461)
386 TIGR01984 UbiH 2-polyprenyl-6- 97.1 0.0012 2.6E-08 65.2 7.2 33 207-239 1-34 (382)
387 PRK01438 murD UDP-N-acetylmura 97.1 0.00067 1.5E-08 69.3 5.3 79 204-295 15-95 (480)
388 PRK07333 2-octaprenyl-6-methox 97.0 0.0015 3.2E-08 65.2 7.3 33 207-239 3-37 (403)
389 PTZ00188 adrenodoxin reductase 97.0 0.00042 9.2E-09 69.1 3.2 37 204-240 38-75 (506)
390 KOG2311 NAD/FAD-utilizing prot 97.0 0.0038 8.3E-08 60.8 9.5 36 11-46 27-62 (679)
391 COG3075 GlpB Anaerobic glycero 97.0 0.00078 1.7E-08 62.5 4.5 34 12-45 2-35 (421)
392 PRK07494 2-octaprenyl-6-methox 97.0 0.0021 4.5E-08 63.8 7.9 34 206-239 8-41 (388)
393 PRK07045 putative monooxygenas 97.0 0.0021 4.6E-08 63.7 7.9 35 206-240 6-40 (388)
394 TIGR01372 soxA sarcosine oxida 97.0 0.0059 1.3E-07 67.7 12.1 96 12-178 317-413 (985)
395 PRK06184 hypothetical protein; 97.0 0.0019 4.2E-08 66.4 7.8 35 206-240 4-38 (502)
396 TIGR01988 Ubi-OHases Ubiquinon 97.0 0.0018 3.9E-08 64.0 7.3 33 207-239 1-33 (385)
397 PF01266 DAO: FAD dependent ox 97.0 0.001 2.2E-08 64.8 5.5 31 207-237 1-31 (358)
398 COG3573 Predicted oxidoreducta 97.0 0.001 2.2E-08 61.8 4.9 43 12-54 5-51 (552)
399 PRK08013 oxidoreductase; Provi 97.0 0.0021 4.6E-08 64.0 7.6 34 206-239 4-37 (400)
400 KOG1346 Programmed cell death 97.0 0.0026 5.7E-08 60.8 7.5 97 11-178 346-451 (659)
401 TIGR03315 Se_ygfK putative sel 97.0 0.001 2.2E-08 72.5 5.4 37 204-240 536-572 (1012)
402 TIGR02032 GG-red-SF geranylger 97.0 0.0022 4.8E-08 60.7 7.3 33 207-239 2-34 (295)
403 PLN02697 lycopene epsilon cycl 97.0 0.0022 4.7E-08 65.7 7.6 35 206-240 109-143 (529)
404 TIGR00137 gid_trmFO tRNA:m(5)U 96.9 0.0015 3.3E-08 64.5 6.1 33 207-239 2-34 (433)
405 COG0492 TrxB Thioredoxin reduc 96.9 0.011 2.5E-07 56.0 11.7 99 11-178 142-240 (305)
406 PRK04176 ribulose-1,5-biphosph 96.9 0.0047 1E-07 57.3 8.9 36 205-240 25-60 (257)
407 PRK06567 putative bifunctional 96.9 0.0011 2.4E-08 71.1 5.3 36 203-238 381-416 (1028)
408 PRK05714 2-octaprenyl-3-methyl 96.9 0.0025 5.3E-08 63.6 7.5 32 207-238 4-35 (405)
409 PRK06475 salicylate hydroxylas 96.9 0.0031 6.7E-08 62.8 7.6 35 206-240 3-37 (400)
410 PRK07608 ubiquinone biosynthes 96.9 0.0035 7.6E-08 62.1 8.0 34 206-239 6-39 (388)
411 PRK12809 putative oxidoreducta 96.8 0.018 3.9E-07 60.9 13.7 34 12-45 451-485 (639)
412 PRK07364 2-octaprenyl-6-methox 96.8 0.0028 6.1E-08 63.4 7.3 34 206-239 19-52 (415)
413 PRK08849 2-octaprenyl-3-methyl 96.8 0.0033 7.2E-08 62.2 7.7 32 207-238 5-36 (384)
414 PF01494 FAD_binding_3: FAD bi 96.8 0.002 4.3E-08 62.7 6.1 34 207-240 3-36 (356)
415 PRK07190 hypothetical protein; 96.8 0.0031 6.6E-08 64.4 7.5 35 206-240 6-40 (487)
416 PRK08244 hypothetical protein; 96.8 0.003 6.4E-08 64.8 7.4 35 206-240 3-37 (493)
417 PRK13984 putative oxidoreducta 96.8 0.042 9.1E-07 57.9 16.1 31 12-42 418-454 (604)
418 KOG4254 Phytoene desaturase [C 96.8 0.0014 2.9E-08 63.5 4.2 49 10-58 12-60 (561)
419 PRK09897 hypothetical protein; 96.8 0.0035 7.6E-08 64.2 7.5 35 206-240 2-38 (534)
420 PRK08850 2-octaprenyl-6-methox 96.8 0.0034 7.4E-08 62.6 7.4 32 206-237 5-36 (405)
421 PRK10157 putative oxidoreducta 96.8 0.003 6.5E-08 63.4 6.9 34 206-239 6-39 (428)
422 TIGR03378 glycerol3P_GlpB glyc 96.7 0.0019 4.1E-08 63.6 4.8 33 13-45 1-33 (419)
423 PRK08020 ubiF 2-octaprenyl-3-m 96.7 0.0048 1E-07 61.2 7.7 33 206-238 6-38 (391)
424 KOG2755 Oxidoreductase [Genera 96.7 0.0025 5.5E-08 57.3 5.0 84 208-292 2-106 (334)
425 KOG4716 Thioredoxin reductase 96.7 0.0048 1E-07 57.6 6.8 106 13-180 199-304 (503)
426 PRK12775 putative trifunctiona 96.6 0.022 4.9E-07 63.1 13.0 35 11-45 570-605 (1006)
427 COG2303 BetA Choline dehydroge 96.6 0.0018 3.9E-08 66.9 4.2 37 9-45 4-40 (542)
428 KOG2960 Protein involved in th 96.6 0.00059 1.3E-08 59.2 0.3 41 12-52 76-119 (328)
429 PRK14106 murD UDP-N-acetylmura 96.6 0.0043 9.3E-08 62.8 6.7 34 12-45 5-38 (450)
430 KOG0405 Pyridine nucleotide-di 96.6 0.01 2.2E-07 55.8 8.2 104 11-180 188-291 (478)
431 PRK06617 2-octaprenyl-6-methox 96.6 0.0059 1.3E-07 60.2 7.3 31 207-237 3-33 (374)
432 PRK06183 mhpA 3-(3-hydroxyphen 96.6 0.0055 1.2E-07 63.5 7.3 35 206-240 11-45 (538)
433 PRK05732 2-octaprenyl-6-methox 96.6 0.0063 1.4E-07 60.4 7.4 32 206-237 4-38 (395)
434 PLN02661 Putative thiazole syn 96.5 0.0085 1.9E-07 57.5 7.8 44 197-240 84-128 (357)
435 TIGR01810 betA choline dehydro 96.5 0.0021 4.6E-08 66.5 3.9 33 14-46 1-34 (532)
436 TIGR00136 gidA glucose-inhibit 96.5 0.0072 1.6E-07 62.2 7.4 31 207-237 2-32 (617)
437 PRK12771 putative glutamate sy 96.5 0.079 1.7E-06 55.3 15.4 34 12-45 267-301 (564)
438 KOG2311 NAD/FAD-utilizing prot 96.5 0.0056 1.2E-07 59.7 6.0 31 207-237 30-60 (679)
439 PLN02785 Protein HOTHEAD 96.5 0.0032 7E-08 65.5 4.8 35 11-46 54-88 (587)
440 COG0445 GidA Flavin-dependent 96.5 0.0036 7.8E-08 62.3 4.8 33 206-238 5-37 (621)
441 PRK11445 putative oxidoreducta 96.5 0.0084 1.8E-07 58.6 7.4 31 207-238 3-33 (351)
442 PRK10015 oxidoreductase; Provi 96.4 0.007 1.5E-07 60.8 6.9 34 207-240 7-40 (429)
443 TIGR01317 GOGAT_sm_gam glutama 96.4 0.16 3.6E-06 51.8 16.7 36 11-46 282-318 (485)
444 COG0644 FixC Dehydrogenases (f 96.4 0.011 2.3E-07 58.9 7.6 35 206-240 4-38 (396)
445 COG3380 Predicted NAD/FAD-depe 96.4 0.0052 1.1E-07 55.8 4.8 34 207-240 3-36 (331)
446 PRK07538 hypothetical protein; 96.4 0.0091 2E-07 59.7 7.2 34 207-240 2-35 (413)
447 PF12831 FAD_oxidored: FAD dep 96.3 0.0036 7.8E-08 62.9 3.7 34 207-240 1-34 (428)
448 PRK08243 4-hydroxybenzoate 3-m 96.2 0.015 3.2E-07 57.8 7.9 34 206-239 3-36 (392)
449 PRK06719 precorrin-2 dehydroge 96.2 0.0096 2.1E-07 50.7 5.6 72 202-289 10-81 (157)
450 PRK08132 FAD-dependent oxidore 96.2 0.011 2.4E-07 61.5 7.1 35 206-240 24-58 (547)
451 PRK06185 hypothetical protein; 96.2 0.012 2.5E-07 58.8 7.1 34 206-239 7-40 (407)
452 TIGR02023 BchP-ChlP geranylger 96.2 0.015 3.2E-07 57.7 7.7 31 207-237 2-32 (388)
453 PF13450 NAD_binding_8: NAD(P) 96.2 0.0059 1.3E-07 43.9 3.3 32 210-241 1-32 (68)
454 PF04820 Trp_halogenase: Trypt 96.2 0.013 2.8E-07 59.2 7.0 33 207-239 1-36 (454)
455 TIGR00275 flavoprotein, HI0933 96.1 0.01 2.3E-07 59.0 6.3 32 209-240 1-32 (400)
456 PRK06996 hypothetical protein; 96.1 0.014 3.1E-07 58.0 7.0 33 206-238 12-48 (398)
457 KOG2665 Predicted FAD-dependen 96.1 0.0047 1E-07 57.1 3.0 38 11-48 47-86 (453)
458 PF00996 GDI: GDP dissociation 96.0 0.0091 2E-07 59.3 4.9 44 9-52 1-44 (438)
459 COG1148 HdrA Heterodisulfide r 96.0 0.012 2.6E-07 57.7 5.4 36 205-240 124-159 (622)
460 PRK06126 hypothetical protein; 95.9 0.02 4.3E-07 59.6 7.4 35 206-240 8-42 (545)
461 KOG0399 Glutamate synthase [Am 95.9 0.011 2.4E-07 63.2 5.3 40 201-240 1781-1820(2142)
462 COG4529 Uncharacterized protei 95.9 0.024 5.2E-07 56.0 7.1 35 206-240 2-39 (474)
463 PF01210 NAD_Gly3P_dh_N: NAD-d 95.9 0.0095 2E-07 50.8 4.0 32 14-45 1-32 (157)
464 PRK01747 mnmC bifunctional tRN 95.8 0.022 4.8E-07 60.6 7.4 33 206-238 261-293 (662)
465 COG0579 Predicted dehydrogenas 95.8 0.029 6.2E-07 55.5 7.5 35 206-240 4-40 (429)
466 PLN02927 antheraxanthin epoxid 95.8 0.023 4.9E-07 59.6 7.2 35 204-238 80-114 (668)
467 PF13241 NAD_binding_7: Putati 95.8 0.0086 1.9E-07 47.0 3.1 34 11-44 6-39 (103)
468 TIGR01989 COQ6 Ubiquinone bios 95.8 0.026 5.6E-07 57.0 7.3 31 207-237 2-36 (437)
469 COG3634 AhpF Alkyl hydroperoxi 95.8 0.21 4.7E-06 47.1 12.5 35 11-45 353-387 (520)
470 KOG2852 Possible oxidoreductas 95.8 0.0046 1E-07 56.5 1.6 42 8-49 6-53 (380)
471 TIGR02360 pbenz_hydroxyl 4-hyd 95.7 0.039 8.4E-07 54.7 8.0 34 206-239 3-36 (390)
472 TIGR01470 cysG_Nterm siroheme 95.6 0.02 4.3E-07 51.1 5.1 35 11-45 8-42 (205)
473 PRK06719 precorrin-2 dehydroge 95.6 0.023 4.9E-07 48.4 5.0 33 11-43 12-44 (157)
474 PF13241 NAD_binding_7: Putati 95.5 0.011 2.3E-07 46.5 2.7 36 203-238 5-40 (103)
475 KOG2614 Kynurenine 3-monooxyge 95.4 0.038 8.3E-07 53.4 6.6 35 206-240 3-37 (420)
476 PRK05335 tRNA (uracil-5-)-meth 95.3 0.015 3.2E-07 57.4 3.6 35 206-240 3-37 (436)
477 KOG1238 Glucose dehydrogenase/ 95.3 0.02 4.3E-07 58.4 4.5 38 10-47 55-93 (623)
478 COG0569 TrkA K+ transport syst 95.3 0.021 4.6E-07 51.8 4.3 33 13-45 1-33 (225)
479 PF03721 UDPG_MGDP_dh_N: UDP-g 95.3 0.019 4.1E-07 50.4 3.8 32 14-45 2-33 (185)
480 PF01593 Amino_oxidase: Flavin 95.2 0.018 3.9E-07 57.5 4.0 31 22-52 1-31 (450)
481 PRK05329 anaerobic glycerol-3- 95.2 0.34 7.4E-06 48.3 12.8 92 16-171 219-315 (422)
482 PRK14106 murD UDP-N-acetylmura 95.2 0.021 4.5E-07 57.9 4.3 82 203-295 3-85 (450)
483 PRK02705 murD UDP-N-acetylmura 95.2 0.022 4.8E-07 57.8 4.5 33 14-46 2-34 (459)
484 PLN00093 geranylgeranyl diphos 95.2 0.13 2.9E-06 51.9 9.9 34 206-239 40-73 (450)
485 PF01488 Shikimate_DH: Shikima 95.1 0.043 9.4E-07 45.4 5.1 35 11-45 11-46 (135)
486 PRK06718 precorrin-2 dehydroge 95.0 0.036 7.8E-07 49.3 4.8 34 11-44 9-42 (202)
487 COG1648 CysG Siroheme synthase 95.0 0.03 6.5E-07 50.0 4.1 74 203-289 10-83 (210)
488 COG1251 NirB NAD(P)H-nitrite r 94.9 0.11 2.4E-06 53.9 8.5 88 206-293 4-116 (793)
489 PF02737 3HCDH_N: 3-hydroxyacy 94.8 0.04 8.6E-07 48.2 4.5 32 14-45 1-32 (180)
490 KOG3855 Monooxygenase involved 94.8 0.032 6.9E-07 53.7 4.0 33 12-44 36-72 (481)
491 PRK07530 3-hydroxybutyryl-CoA 94.7 0.039 8.6E-07 52.3 4.6 34 12-45 4-37 (292)
492 COG0493 GltD NADPH-dependent g 94.7 0.027 5.8E-07 56.5 3.5 39 202-240 120-158 (457)
493 PRK08294 phenol 2-monooxygenas 94.7 0.082 1.8E-06 55.9 7.3 35 206-240 33-68 (634)
494 KOG2820 FAD-dependent oxidored 94.6 0.18 3.8E-06 47.5 8.3 37 204-240 6-42 (399)
495 TIGR01470 cysG_Nterm siroheme 94.6 0.04 8.7E-07 49.2 4.1 79 203-294 7-86 (205)
496 PRK14192 bifunctional 5,10-met 94.6 0.1 2.2E-06 49.0 6.9 36 202-237 156-192 (283)
497 COG1206 Gid NAD(FAD)-utilizing 94.6 0.041 8.8E-07 51.5 3.9 34 13-46 4-37 (439)
498 PF01262 AlaDh_PNT_C: Alanine 94.5 0.056 1.2E-06 46.6 4.7 35 11-45 19-53 (168)
499 KOG0029 Amine oxidase [Seconda 94.5 0.056 1.2E-06 55.0 5.3 39 204-242 14-52 (501)
500 PRK04148 hypothetical protein; 94.5 0.042 9.1E-07 45.0 3.5 34 12-46 17-50 (134)
No 1
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=100.00 E-value=1.4e-75 Score=582.87 Aligned_cols=429 Identities=49% Similarity=0.860 Sum_probs=379.4
Q ss_pred hccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCC---------CccccccccceecCCccc
Q 044575 8 QCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQT---------EVHSSVYASLRLTSPREI 78 (454)
Q Consensus 8 ~~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 78 (454)
.+...++|+|||||+|||+||++|++.|++|+|||+++.+||+|++.+....+ ..++++|.++++|+|+..
T Consensus 6 ~~~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~ 85 (461)
T PLN02172 6 NPINSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPREC 85 (461)
T ss_pred cCCCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhh
Confidence 45667999999999999999999999999999999999999999998654321 356889999999999999
Q ss_pred cccCCCCCCCCC---CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCC
Q 044575 79 MGYTDFPFVLKK---GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKA 155 (454)
Q Consensus 79 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~ 155 (454)
|+|+|||++... ..+.+.||++.++.+||++|++++++.++|+|+++|++|++.+. +|+|++.+++
T Consensus 86 m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~----------~w~V~~~~~~- 154 (461)
T PLN02172 86 MGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDG----------KWRVQSKNSG- 154 (461)
T ss_pred ccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCC----------eEEEEEEcCC-
Confidence 999999997521 12457899999999999999999999999999999999987532 8999987643
Q ss_pred CeEEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEec
Q 044575 156 DKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSA 235 (454)
Q Consensus 156 ~~~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~ 235 (454)
+...+..||+||||||+++.|++|.+||++.|.|..+|++.|+.++.+++|+|+|||+|.||+|+|.+|+..+++|+++.
T Consensus 155 ~~~~~~~~d~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~ 234 (461)
T PLN02172 155 GFSKDEIFDAVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIAS 234 (461)
T ss_pred CceEEEEcCEEEEeccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEE
Confidence 23345689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcCccchhhhccCCCeEEcCceeEEecCCcEEEeCCCEEeeceEEEccCcccCCcCCCCCCceeeCCCCcccccCcc
Q 044575 236 KSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLDTKGIVVVDDDRVGPLYEHT 315 (454)
Q Consensus 236 r~~~~~~~~~~~l~~~~~i~~~~~v~~v~~~~~v~~~dG~~i~~D~vI~atG~~~~~~~l~~~g~i~v~~~~~~~~~~~~ 315 (454)
|+..... ..+......+++.+..|..+.+++.|+|+||+.+++|.||+||||++++|||+..+.+.+|++.+.++|+|+
T Consensus 235 r~~~~~~-~~~~~~~~~~v~~~~~I~~~~~~g~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~~i~v~~~~v~~Ly~~~ 313 (461)
T PLN02172 235 RASESDT-YEKLPVPQNNLWMHSEIDTAHEDGSIVFKNGKVVYADTIVHCTGYKYHFPFLETNGYMRIDENRVEPLYKHV 313 (461)
T ss_pred eeccccc-cccCcCCCCceEECCcccceecCCeEEECCCCCccCCEEEECCcCCccccccCcccceeeCCCcchhhHHhh
Confidence 9765421 122222334677788888877777899999999999999999999999999998788889999888999999
Q ss_pred cCCCCCCCceEecccccccchhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhhhhhcCCCCCcccccc--cHHHHH
Q 044575 316 FPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLSGKRTLPSWDQMMQSVKEFYHSRDVAGIPKHNTHDIA--NFEYCD 393 (454)
Q Consensus 316 ~~~~~~p~l~~iG~~~~~~~~~~a~~qa~~~a~~i~g~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~y~~ 393 (454)
|++...|+|+|+|.+..+.+++++|+||+|+|++++|+..||+.++|++++..+.+.++..+.++++.|.+. ++.|+|
T Consensus 314 f~~~~~p~LafiG~~~~~~~f~~~E~Qa~~~a~v~sG~~~LPs~~~m~~~~~~~~~~~~~~g~~~r~~h~~~~~~~~y~~ 393 (461)
T PLN02172 314 FPPALAPGLSFIGLPAMGIQFVMFEIQSKWVAAVLSGRVTLPSEDKMMEDINAWYASLEALGIPKRYTHKLGKIQSEYLN 393 (461)
T ss_pred cCCCCCCcEEEEeccccccCchhHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHHHHhcCCCCceeEEcCccHHHHHH
Confidence 998656999999999878889999999999999999999999999999999999888777788888889875 679999
Q ss_pred HHHHHcCCCCchHHHHHHHHHHhhCCccccccccCCCCChHHHHHHhcCCCCccc
Q 044575 394 RYADQIGFPHLEEWRKGLCISALVNSDANLETYRDSWDDHELLQEALQSPHFTQL 448 (454)
Q Consensus 394 ~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 448 (454)
+|++.+|++++++|++++++....+...++..||+.|++.++++|++++.....|
T Consensus 394 ~la~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 448 (461)
T PLN02172 394 WIAEECGCPLVEHWRYQEVDRGYQRLVSQPETYRDEWDDDDLMEEAYEDFARKKL 448 (461)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHhCHHhhccccccccceeecccccceEEE
Confidence 9999999999999999999999999999999999999999999999998765443
No 2
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=100.00 E-value=1.9e-69 Score=545.04 Aligned_cols=405 Identities=40% Similarity=0.681 Sum_probs=271.4
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCCC
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGR 92 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (454)
++|+|||||+|||++|++|++.|++++|||+++++||+|++...... -.+++|+++.+|+|+.+|.|+|||+|.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~--g~~~~y~sl~~n~sk~~~~fsdfp~p~---- 75 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPED--GRSSVYDSLHTNTSKEMMAFSDFPFPE---- 75 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCC--SEGGGSTT-B-SS-GGGSCCTTS-HCC----
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCC--CccccccceEEeeCchHhcCCCcCCCC----
Confidence 68999999999999999999999999999999999999998754322 245799999999999999999999998
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCC
Q 044575 93 DVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGH 172 (454)
Q Consensus 93 ~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~ 172 (454)
+.+.|+++.++.+|+++|+++|++.++|+||++|++|++.++.. .++ +|+|++.+. +...+..||+||+|||+
T Consensus 76 ~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~----~~~-~W~V~~~~~--g~~~~~~fD~VvvatG~ 148 (531)
T PF00743_consen 76 DYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFS----ATG-KWEVTTEND--GKEETEEFDAVVVATGH 148 (531)
T ss_dssp CCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-----ET-EEEEEETTT--TEEEEEEECEEEEEE-S
T ss_pred CCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccC----CCc-eEEEEeecC--CeEEEEEeCeEEEcCCC
Confidence 88999999999999999999999999999999999999875420 122 899987643 44556789999999999
Q ss_pred CCCCCCCC--CCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc-Cc-------
Q 044575 173 YSYPRLPS--IKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI-SE------- 242 (454)
Q Consensus 173 ~~~p~~p~--i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~-~~------- 242 (454)
++.|++|. +||++.|.|.++||++|++++.++||+|+|||+|+||+|+|.+|+..+++|+++.|++.+ .+
T Consensus 149 ~~~P~~P~~~~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~ 228 (531)
T PF00743_consen 149 FSKPNIPEPSFPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGY 228 (531)
T ss_dssp SSCESB-----CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--------------
T ss_pred cCCCCCChhhhhhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccccc
Confidence 99999995 999999999999999999999999999999999999999999999999999999998876 00
Q ss_pred --------------------cchhhh-----c-------------------------------cCCCeEEcCceeEEecC
Q 044575 243 --------------------GLSKVI-----S-------------------------------KHNNLHLHPQIDCLRED 266 (454)
Q Consensus 243 --------------------~~~~~l-----~-------------------------------~~~~i~~~~~v~~v~~~ 266 (454)
.+...+ . ..+++..++.|++++++
T Consensus 229 P~D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk~~I~~~~~~ 308 (531)
T PF00743_consen 229 PFDMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVKPDIKRFTEN 308 (531)
T ss_dssp ----------------------------------------------------------------------EE-EEEE-SS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 000000 0 00124566788888765
Q ss_pred CcEEEeCCCEE-eeceEEEccCcccCCcCCCCCCceeeCCCCcccccCcccCCCC-CCCceEecccccc-cchhHHHHHH
Q 044575 267 GRVTFVDGCWV-TADTILYCTGYSYSFPFLDTKGIVVVDDDRVGPLYEHTFPPSL-APSLSFVGIPRKL-IGFPFFESQA 343 (454)
Q Consensus 267 ~~v~~~dG~~i-~~D~vI~atG~~~~~~~l~~~g~i~v~~~~~~~~~~~~~~~~~-~p~l~~iG~~~~~-~~~~~a~~qa 343 (454)
.|+|.||+++ ++|.||+||||+.++|||++. .+.++++.. .+|+++|++.. .|+|+|+|.+... ..+|++|+||
T Consensus 309 -~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~-~~~~~~~~~-~LYk~vfp~~~~~ptLafIG~~~~~g~~fp~~ElQA 385 (531)
T PF00743_consen 309 -SVIFEDGSTEEDVDVIIFCTGYKFSFPFLDES-LIKVDDNRV-RLYKHVFPPNLDHPTLAFIGLVQPFGSIFPIFELQA 385 (531)
T ss_dssp -EEEETTSEEEEE-SEEEE---EE---TTB-TT-TT-S-SSSS-SEETTTEETETTSTTEEESS-SBSSS-HHHHHHHHH
T ss_pred -cccccccccccccccccccccccccccccccc-ccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence 5999999986 599999999999999999964 344444444 79999998753 4899999998753 5679999999
Q ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHhhhhhcCC-CCCcccccccHHHHHHHHHHcCCCC-chH---HHHHHHHHHhhC
Q 044575 344 KWIAQLLSGKRTLPSWDQMMQSVKEFYHSRDVAGI-PKHNTHDIANFEYCDRYADQIGFPH-LEE---WRKGLCISALVN 418 (454)
Q Consensus 344 ~~~a~~i~g~~~lp~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~y~~~l~~~~g~~~-~~~---~~~~l~~~~~~~ 418 (454)
||+|++++|+.+||+.++|++++.+..+.+..+.. ..++....+++.|+|+||+.+|+.| +.. ...+|++.+++.
T Consensus 386 rw~a~v~sG~~~LPs~~~M~~~i~~~~~~~~~~~~~~~~~~~~~d~~~y~deLA~~iG~~P~~~~l~~~dp~l~~~~~~g 465 (531)
T PF00743_consen 386 RWAARVFSGRVKLPSKEEMMEEIEEEQEWRAKRFGFSPRHTIQVDYIDYMDELAREIGCKPNFWKLFLTDPKLARKLYFG 465 (531)
T ss_dssp HHHHHHHTTSS----HHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHTTS--------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999988666544322 1112222356799999999999964 221 235677777777
Q ss_pred CccccccccCC----CCChH
Q 044575 419 SDANLETYRDS----WDDHE 434 (454)
Q Consensus 419 ~~~~~~~~r~~----~~~~~ 434 (454)
.+ .++.||+. |+||+
T Consensus 466 p~-~p~~YRL~Gpg~w~gar 484 (531)
T PF00743_consen 466 PC-TPYQYRLFGPGKWPGAR 484 (531)
T ss_dssp --------------------
T ss_pred cc-ccccccccccccccccc
Confidence 66 59999998 66654
No 3
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.5e-61 Score=467.01 Aligned_cols=417 Identities=47% Similarity=0.780 Sum_probs=351.9
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK 90 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (454)
..++|+|||||+|||++|+.|+++|++++||||++.+||+|.+.+... ..++++|+++++|+|+++|+|+|+|++.
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~--~~~ss~Y~~l~tn~pKe~~~~~dfpf~~-- 80 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVE--VVHSSVYKSLRTNLPKEMMGYSDFPFPE-- 80 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCccc--ccccchhhhhhccCChhhhcCCCCCCcc--
Confidence 358999999999999999999999999999999999999999986654 4577899999999999999999999998
Q ss_pred CCC-CCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEc
Q 044575 91 GRD-VRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA 169 (454)
Q Consensus 91 ~~~-~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViA 169 (454)
. ...||++.++.+||++||++|++.++|+|+++|..|+...++ .|.|.+.+..+. .....||.||+|
T Consensus 81 --~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~g---------kW~V~~~~~~~~-~~~~ifd~VvVc 148 (448)
T KOG1399|consen 81 --RDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKG---------KWRVTTKDNGTQ-IEEEIFDAVVVC 148 (448)
T ss_pred --cCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCC---------ceeEEEecCCcc-eeEEEeeEEEEc
Confidence 5 445599999999999999999999999999999999987643 899999876533 457789999999
Q ss_pred cCCCCCCCCCCCCC--cCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchhh
Q 044575 170 TGHYSYPRLPSIKG--MDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKV 247 (454)
Q Consensus 170 tG~~~~p~~p~i~G--~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~ 247 (454)
||++..|++|.+|| ++.|.|..+||++|+.++.|++|+|+|||+|+||+|+|.+++..+++|+++.++..........
T Consensus 149 tGh~~~P~~P~~~g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~~~~~~~~~~~~ 228 (448)
T KOG1399|consen 149 TGHYVEPRIPQIPGPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVVSPKVHVEPPEI 228 (448)
T ss_pred ccCcCCCCCCcCCCCchhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeeecccccccccce
Confidence 99997799999998 6799999999999999999999999999999999999999999999999987610011111111
Q ss_pred hccCCCeEEcCceeEEecCCcEEEeCCCEEeeceEEEccCcccCCcCCCCCCceeeCCCCcccccCcccCCCCCCCceEe
Q 044575 248 ISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFV 327 (454)
Q Consensus 248 l~~~~~i~~~~~v~~v~~~~~v~~~dG~~i~~D~vI~atG~~~~~~~l~~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~i 327 (454)
+ ..+++..+.|+.+++++.+.+.++....+|.||+||||...+|||+..+.+.+.++.+.++|+++|++...+++.++
T Consensus 229 ~--~~~~~~~~~i~~~~e~~~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~~~~~~~~~~~~pl~k~~~p~~~~~~~~~~ 306 (448)
T KOG1399|consen 229 L--GENLWQVPSIKSFTEDGSVFEKGGPVERVDRIIFCTGYKYKFPFLETLGLGTVRDNIVGPLYKKVFPPALAPGLSLA 306 (448)
T ss_pred e--ecceEEccccccccCcceEEEcCceeEEeeeEEEeeeeEeecceeccCCceeeccCcccchheeccchhhCcccccc
Confidence 1 12455555588888887666667777779999999999999999998776777888888999999998777888999
Q ss_pred cccccccchhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhhhhhcCCC-CCcccccc---cHHHHHHHHHHcCCCC
Q 044575 328 GIPRKLIGFPFFESQAKWIAQLLSGKRTLPSWDQMMQSVKEFYHSRDVAGIP-KHNTHDIA---NFEYCDRYADQIGFPH 403 (454)
Q Consensus 328 G~~~~~~~~~~a~~qa~~~a~~i~g~~~lp~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~y~~~l~~~~g~~~ 403 (454)
|++.....++..+.|++|+++++.|+.++|+.++|+.+.......++..+.+ .++.|..+ +..|..+++..-|++.
T Consensus 307 ~l~~~~~~f~~~e~Q~r~~~~v~~G~~~lps~~~m~~d~~~~~~~~~~~~~~~~~~t~~~~~~~l~~y~~~~~~~~g~~~ 386 (448)
T KOG1399|consen 307 GLPLIQIPFPMFELQARWVAAVLEGRLKLPSKDQMLEDGQEKYEKLDAVGLATGRHTHVPDYDELAEYINWFADLCGFPK 386 (448)
T ss_pred ccCeeeEeecceehhhhhhHhhhcCCCcCCCHHHhhhhhhhhhhhhhhhcccccccccccchHHHHHHhhhhhhhcCCCC
Confidence 8887667889999999999999999999999999999999888777777776 66777763 5688889999999988
Q ss_pred chHHHHHHHHHHhhCCccccccccCCCCCh-HHHHHHhcCCCC
Q 044575 404 LEEWRKGLCISALVNSDANLETYRDSWDDH-ELLQEALQSPHF 445 (454)
Q Consensus 404 ~~~~~~~l~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~~~~~~ 445 (454)
.+.|+....+......+.....||..|.++ ++..++.+.-+.
T Consensus 387 ~~~~~~~~~~~g~~~~y~~~~~~~~~w~g~~~~~~~~~~~~~~ 429 (448)
T KOG1399|consen 387 TEPWLAKEGWKGPCGLYAYGLTGPDKWDGAAKLILEADDDIGK 429 (448)
T ss_pred cchHHhhhhccCccceeEeecccCcccccHHHHHHHHHHhhcc
Confidence 888887776554444445567777789999 677777776654
No 4
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-36 Score=301.89 Aligned_cols=205 Identities=40% Similarity=0.650 Sum_probs=188.7
Q ss_pred ccCCCcEEEECcChHHHHHHHHHHHcCCc-EEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCC
Q 044575 9 CAQSKNVCVIGAGPSGLVAARELRKEGHR-VVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFV 87 (454)
Q Consensus 9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~-v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (454)
+.+.+||+|||||+|||++|.+|++.|.. ++||||++.+||+|++ ..|++++.++|+..++|+.+|++
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~-----------~ry~~l~~~~p~~~~~~~~~p~~ 73 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRY-----------NRYPGLRLDSPKWLLGFPFLPFR 73 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchh-----------ccCCceEECCchheeccCCCccC
Confidence 45678999999999999999999999998 9999999999999996 47999999999999999999996
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEE
Q 044575 88 LKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVV 167 (454)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vV 167 (454)
+...|+...++.+|+.++++++++...|++++.|..++..+++. .|+|++.++... ++.+|+||
T Consensus 74 -----~~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~--------~w~V~~~~~~~~---~~~a~~vV 137 (443)
T COG2072 74 -----WDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTK--------RWTVTTSDGGTG---ELTADFVV 137 (443)
T ss_pred -----CcccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCC--------eEEEEEcCCCee---eEecCEEE
Confidence 34567777789999999999999999999999999988887654 899999987522 17799999
Q ss_pred EccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575 168 VATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI 240 (454)
Q Consensus 168 iAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~ 240 (454)
+|||+++.|++|.|+|.+.|.+.++||.+++++.+++||+|+|||+|+||+++|.+|++.+++||++.|++..
T Consensus 138 ~ATG~~~~P~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~ 210 (443)
T COG2072 138 VATGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH 210 (443)
T ss_pred EeecCCCCCCCCCCCCccCCCceEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876
No 5
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=2e-35 Score=290.31 Aligned_cols=295 Identities=22% Similarity=0.290 Sum_probs=204.8
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCC-cccc-ccccceecCCccccccCCCCCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTE-VHSS-VYASLRLTSPREIMGYTDFPFVL 88 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 88 (454)
..||++||||||||..||.++++.|.+|+++|+...+||+|.+.+|+|+|. ++.. .+..+..... .++ ...
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~--~~G-----i~~ 75 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAK--EYG-----ISA 75 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhccc--ccc-----eec
Confidence 469999999999999999999999999999999888999999999999982 2221 1222211110 010 000
Q ss_pred CCCCCCCCCCCHHHHHHHHHH-----------HHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCe
Q 044575 89 KKGRDVRRFPGHKELWLYLKD-----------FCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADK 157 (454)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~-----------~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 157 (454)
..+ -....++.+..++ +.+..++. +..+ +..- .+ ..+|.+... .
T Consensus 76 ----~~~-~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~--vi~G-~a~f---~~-----------~~~v~V~~~---~ 130 (454)
T COG1249 76 ----EVP-KIDFEKLLARKDKVVRLLTGGVEGLLKKNGVD--VIRG-EARF---VD-----------PHTVEVTGE---D 130 (454)
T ss_pred ----CCC-CcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCE--EEEE-EEEE---CC-----------CCEEEEcCC---C
Confidence 000 1223334333333 22222332 1111 1111 11 234555542 1
Q ss_pred EEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEeccc
Q 044575 158 VVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKS 237 (454)
Q Consensus 158 ~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~ 237 (454)
..++++|++||||| ++|..|+++|++... ++.+....... .-+++++|||||++|+|+|..++++|.+||+++|.
T Consensus 131 ~~~~~a~~iiIATG--S~p~~~~~~~~~~~~--~~~s~~~l~~~-~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~ 205 (454)
T COG1249 131 KETITADNIIIATG--SRPRIPPGPGIDGAR--ILDSSDALFLL-ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERG 205 (454)
T ss_pred ceEEEeCEEEEcCC--CCCcCCCCCCCCCCe--EEechhhcccc-cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Confidence 23889999999999 999999988876532 33333322222 34589999999999999999999999999999999
Q ss_pred CCcCccchhhhc--------cC-CCeEEcCceeEEecCC---cEEEeCCC--EEeeceEEEccCcccCCcCCC-------
Q 044575 238 LNISEGLSKVIS--------KH-NNLHLHPQIDCLREDG---RVTFVDGC--WVTADTILYCTGYSYSFPFLD------- 296 (454)
Q Consensus 238 ~~~~~~~~~~l~--------~~-~~i~~~~~v~~v~~~~---~v~~~dG~--~i~~D~vI~atG~~~~~~~l~------- 296 (454)
+++++.+++.+. +. ..++.+..+++++.++ .+.+++|+ ++++|.|++|+|++||++-|.
T Consensus 206 ~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~ 285 (454)
T COG1249 206 DRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVE 285 (454)
T ss_pred CCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCce
Confidence 999776655432 22 3577788888886543 47777877 688999999999999998532
Q ss_pred --CCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcC
Q 044575 297 --TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSG 352 (454)
Q Consensus 297 --~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g 352 (454)
++|.|.||+.+. ++.|++|++||+...+ ..+.|..|++.+|.++.|
T Consensus 286 ~~~rg~I~VD~~~~----------Tnvp~IyA~GDV~~~~~Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 286 LDDRGFIKVDDQMT----------TNVPGIYAIGDVIGGPMLAHVAMAEGRIAAENIAG 334 (454)
T ss_pred ECCCCCEEeCCccc----------cCCCCEEEeeccCCCcccHhHHHHHHHHHHHHHhC
Confidence 456777774443 5579999999997655 458999999999999997
No 6
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=3e-34 Score=274.40 Aligned_cols=277 Identities=23% Similarity=0.276 Sum_probs=209.4
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCCC
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGR 92 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (454)
+||+|||||+||+++|..|++.|++|+|||+++ .||.|..... ...++++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~---------------------~~~~~~~-------- 50 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTTE---------------------VENYPGF-------- 50 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeeccc---------------------ccccCCC--------
Confidence 589999999999999999999999999999875 7887763210 0011111
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCC
Q 044575 93 DVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGH 172 (454)
Q Consensus 93 ~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~ 172 (454)
+...+..++..++.++++++++. +++ ++|.+|+..+. .|.|++.++. ++.||+||+|||
T Consensus 51 --~~~~~~~~~~~~l~~~~~~~gv~--~~~-~~v~~v~~~~~----------~~~v~~~~~~-----~~~~d~liiAtG- 109 (300)
T TIGR01292 51 --PEGISGPELMEKMKEQAVKFGAE--IIY-EEVIKVDLSDR----------PFKVKTGDGK-----EYTAKAVIIATG- 109 (300)
T ss_pred --CCCCChHHHHHHHHHHHHHcCCe--EEE-EEEEEEEecCC----------eeEEEeCCCC-----EEEeCEEEECCC-
Confidence 11234578999999999999987 666 89999987542 6888776543 789999999999
Q ss_pred CCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc--Cccchhhhcc
Q 044575 173 YSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI--SEGLSKVISK 250 (454)
Q Consensus 173 ~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~--~~~~~~~l~~ 250 (454)
+.|+.|.+||.+.+.+..++.........+++++|+|||+|.+|+|+|..|++.+++|+++.|.+.+ .+.+.+.+.+
T Consensus 110 -~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~~~~~~~~l~~ 188 (300)
T TIGR01292 110 -ASARKLGIPGEDEFLGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRAEKILLDRLRK 188 (300)
T ss_pred -CCcccCCCCChhhcCCccEEEeeecChhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCcCHHHHHHHHh
Confidence 7889899999877666666655554445567899999999999999999999999999999998765 2223334433
Q ss_pred --CCCeEEcCceeEEecCC---cEEEeC---C--CEEeeceEEEccCcccCCcCCC------CCCceeeCCCCcccccCc
Q 044575 251 --HNNLHLHPQIDCLREDG---RVTFVD---G--CWVTADTILYCTGYSYSFPFLD------TKGIVVVDDDRVGPLYEH 314 (454)
Q Consensus 251 --~~~i~~~~~v~~v~~~~---~v~~~d---G--~~i~~D~vI~atG~~~~~~~l~------~~g~i~v~~~~~~~~~~~ 314 (454)
..+++.+..++++..++ .+++.+ | .++++|.||+|||++|+.+++. ++|.+.+|++..
T Consensus 189 ~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~~~~~~~g~i~v~~~~~------ 262 (300)
T TIGR01292 189 NPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGLLELDEGGYIVTDEGMR------ 262 (300)
T ss_pred CCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCCChHHHHHhheecCCCcEEECCCCc------
Confidence 34677788899987654 244432 4 4688999999999999987754 335555555432
Q ss_pred ccCCCCCCCceEeccccc--ccchhHHHHHHHHHHHHHc
Q 044575 315 TFPPSLAPSLSFVGIPRK--LIGFPFFESQAKWIAQLLS 351 (454)
Q Consensus 315 ~~~~~~~p~l~~iG~~~~--~~~~~~a~~qa~~~a~~i~ 351 (454)
++.|++|++||+.. ......|..||+.+|.++.
T Consensus 263 ----t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 297 (300)
T TIGR01292 263 ----TSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAE 297 (300)
T ss_pred ----cCCCCEEEeecccCcchhhhhhhhhhHHHHHHHHH
Confidence 45799999999986 3346789999999998875
No 7
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=1.4e-35 Score=284.03 Aligned_cols=336 Identities=21% Similarity=0.249 Sum_probs=230.2
Q ss_pred CCcEEEECcChHHHHHHHHHHHcC--CcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEG--HRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLK 89 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g--~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (454)
+++|||||||++|+.+|+.|.+.. .+|++||+++.. .+..+........
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h------------------l~~plL~eva~g~----------- 53 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH------------------LFTPLLYEVATGT----------- 53 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc------------------ccchhhhhhhcCC-----------
Confidence 478999999999999999999975 899999998742 2222222222222
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhC-CCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEE
Q 044575 90 KGRDVRRFPGHKELWLYLKDFCQRFG-LREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVV 168 (454)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVi 168 (454)
.+..++...+++.++..+ + -....+|++|+.. ..+|++.+.. ++.||+|||
T Consensus 54 --------l~~~~i~~p~~~~~~~~~~v---~~~~~~V~~ID~~------------~k~V~~~~~~-----~i~YD~LVv 105 (405)
T COG1252 54 --------LSESEIAIPLRALLRKSGNV---QFVQGEVTDIDRD------------AKKVTLADLG-----EISYDYLVV 105 (405)
T ss_pred --------CChhheeccHHHHhcccCce---EEEEEEEEEEccc------------CCEEEeCCCc-----cccccEEEE
Confidence 122344444555555333 2 2446789999987 5568888744 789999999
Q ss_pred ccCCCCCCCCCCCCCcCCcccee--------EEeec---CCCCCCC----CCCeEEEEcCCCCHHHHHHHHhhhcC----
Q 044575 169 ATGHYSYPRLPSIKGMDKWKRKQ--------MHSHI---YRVPEPF----RNEVVVVVGNSLSGQDISMELVEVAK---- 229 (454)
Q Consensus 169 AtG~~~~p~~p~i~G~~~~~~~~--------~~~~~---~~~~~~~----~~k~vvVVG~G~sg~e~A~~l~~~~~---- 229 (454)
|+| +.++.+.+||..++.-.. ++.+. +...+.. .-.+|+|||||++|+|+|.+|++...
T Consensus 106 alG--s~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~ 183 (405)
T COG1252 106 ALG--SETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLK 183 (405)
T ss_pred ecC--CcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhh
Confidence 999 999999999977642111 01100 0111111 12479999999999999999997532
Q ss_pred ---------eEEEecccCCcCccchhhhccC---------CCeEEcCceeEEecCCcEEEeCCCE-EeeceEEEccCccc
Q 044575 230 ---------EVHLSAKSLNISEGLSKVISKH---------NNLHLHPQIDCLREDGRVTFVDGCW-VTADTILYCTGYSY 290 (454)
Q Consensus 230 ---------~V~l~~r~~~~~~~~~~~l~~~---------~~i~~~~~v~~v~~~~~v~~~dG~~-i~~D~vI~atG~~~ 290 (454)
+|+|+++.+++++.+.+.++++ +++.+++.|+++++++ |++++|++ |++|++|||+|.++
T Consensus 184 ~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~-v~~~~g~~~I~~~tvvWaaGv~a 262 (405)
T COG1252 184 KFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG-VTLKDGEEEIPADTVVWAAGVRA 262 (405)
T ss_pred hhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCEEEcCCceEEECCCc-EEEccCCeeEecCEEEEcCCCcC
Confidence 8999999999988887665432 5899999999998875 99999985 99999999999998
Q ss_pred CCcCC--------CCCCceeeCCCCcccccCcccCCCCCCCceEecccccc-------cchhHHHHHHHHHHHHHc----
Q 044575 291 SFPFL--------DTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKL-------IGFPFFESQAKWIAQLLS---- 351 (454)
Q Consensus 291 ~~~~l--------~~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~-------~~~~~a~~qa~~~a~~i~---- 351 (454)
+ +++ +..|++.||++++.+ ++|++|++|||... ++.+.|++||+++|++|.
T Consensus 263 ~-~~~~~l~~~e~dr~Grl~V~~~L~~~---------~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l~ 332 (405)
T COG1252 263 S-PLLKDLSGLETDRRGRLVVNPTLQVP---------GHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKARLK 332 (405)
T ss_pred C-hhhhhcChhhhccCCCEEeCCCcccC---------CCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHHHhc
Confidence 8 332 235788888877754 35777788877732 335799999999998774
Q ss_pred CCCCCCCH---HHHHHHHHHHHhhhhhcCCCCCcccccccHHHHHHHHHH-cCCCCchHHHHHHHHHHhhCCcccccccc
Q 044575 352 GKRTLPSW---DQMMQSVKEFYHSRDVAGIPKHNTHDIANFEYCDRYADQ-IGFPHLEEWRKGLCISALVNSDANLETYR 427 (454)
Q Consensus 352 g~~~lp~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~l~~~-~g~~~~~~~~~~l~~~~~~~~~~~~~~~r 427 (454)
|+...|+. .+.+..++.+.+.....+ ....++.++++|. +++..+..+++++. +...|.+.++.-|
T Consensus 333 g~~l~~f~y~~~Gtl~~lG~~~av~~~g~--------~~l~G~~a~~~k~~~~~~~l~~~~~~~~--~~~~w~~~~~~~~ 402 (405)
T COG1252 333 GKPLKPFKYKDKGTLASLGDFSAVADLGG--------VKLKGFLAWLLKRAAYLYYLLGIRSRLA--VALYWLTTYLTGR 402 (405)
T ss_pred CCCCCCCcccceEEEEEccCCceeEEecc--------eeeccHHHHHHHHHHHHheecccCcHHH--HHHHHhhhhhccc
Confidence 54445553 122333333222221110 1245788888884 56655556777777 7777877665544
No 8
>PLN02507 glutathione reductase
Probab=100.00 E-value=2.9e-34 Score=290.65 Aligned_cols=296 Identities=21% Similarity=0.203 Sum_probs=200.6
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEee---------CCCCCcccccCCCCCCCCc-ccc-ccccceecCCccccc
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQ---------NHDVGGQWLYDPNTDQTEV-HSS-VYASLRLTSPREIMG 80 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~---------~~~~GG~w~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~ 80 (454)
++||+||||||||+.||..+++.|.+|+|||+ .+.+||+|.+.+|.|+|.+ ... .+...+. ...
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~-~~~---- 99 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFED-AKN---- 99 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHH-HHh----
Confidence 58999999999999999999999999999996 3579999999999998732 111 1111111 000
Q ss_pred cCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-----------HHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEE
Q 044575 81 YTDFPFVLKKGRDVRRFPGHKELWLYLKDF-----------CQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVK 149 (454)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-----------~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~ 149 (454)
+.+.. ....-....++.++.... ....++. ....++..++.. .++|+
T Consensus 100 ---~G~~~----~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~---~i~g~a~~vd~~------------~v~V~ 157 (499)
T PLN02507 100 ---YGWEI----NEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVK---LYEGEGKIVGPN------------EVEVT 157 (499)
T ss_pred ---cCccc----CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE---EEEEEEEEecCC------------EEEEE
Confidence 00000 000012233433333222 2222332 223344444322 56676
Q ss_pred EeecCCCeEEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcC
Q 044575 150 SKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAK 229 (454)
Q Consensus 150 ~~~~~~~~~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~ 229 (454)
..++ ...++.||+|||||| +.|..|.+||.+.. .++.+....+. .+++|+|||+|.+|+|+|..+++.|+
T Consensus 158 ~~~g---~~~~~~~d~LIIATG--s~p~~p~ipG~~~~----~~~~~~~~l~~-~~k~vvVIGgG~ig~E~A~~l~~~G~ 227 (499)
T PLN02507 158 QLDG---TKLRYTAKHILIATG--SRAQRPNIPGKELA----ITSDEALSLEE-LPKRAVVLGGGYIAVEFASIWRGMGA 227 (499)
T ss_pred eCCC---cEEEEEcCEEEEecC--CCCCCCCCCCccce----echHHhhhhhh-cCCeEEEECCcHHHHHHHHHHHHcCC
Confidence 5543 234688999999999 89999999986431 12222221122 35899999999999999999999999
Q ss_pred eEEEecccCCcCccchh--------hhcc-CCCeEEcCceeEEecC-C--cEEEeCCCEEeeceEEEccCcccCCcCCC-
Q 044575 230 EVHLSAKSLNISEGLSK--------VISK-HNNLHLHPQIDCLRED-G--RVTFVDGCWVTADTILYCTGYSYSFPFLD- 296 (454)
Q Consensus 230 ~V~l~~r~~~~~~~~~~--------~l~~-~~~i~~~~~v~~v~~~-~--~v~~~dG~~i~~D~vI~atG~~~~~~~l~- 296 (454)
+|+++++.+.+.+.+++ .+.+ .++++.+..|+++..+ + .+.+.+|+++++|.||+|+|++|+.+++.
T Consensus 228 ~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l 307 (499)
T PLN02507 228 TVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKRLNL 307 (499)
T ss_pred eEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCCCCc
Confidence 99999998876443332 2322 3578888899998642 2 35666788999999999999999988642
Q ss_pred --------CCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCC
Q 044575 297 --------TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKR 354 (454)
Q Consensus 297 --------~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~ 354 (454)
++|.+.+|++.+ ++.|++|++||+.... ..+.|..||+++|.++.|..
T Consensus 308 ~~~gl~~~~~G~I~Vd~~~~----------Ts~p~IyAiGDv~~~~~l~~~A~~qg~~aa~ni~g~~ 364 (499)
T PLN02507 308 EAVGVELDKAGAVKVDEYSR----------TNIPSIWAIGDVTNRINLTPVALMEGTCFAKTVFGGQ 364 (499)
T ss_pred hhhCcEECCCCcEecCCCCc----------CCCCCEEEeeEcCCCCccHHHHHHHHHHHHHHHcCCC
Confidence 234555555444 4679999999998644 34899999999999998753
No 9
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=1.6e-33 Score=283.02 Aligned_cols=291 Identities=21% Similarity=0.256 Sum_probs=199.9
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCc-ccc-ccccceecCCccccccCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEV-HSS-VYASLRLTSPREIMGYTDFPFVLK 89 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 89 (454)
++||+||||||||++||..+++.|.+|+|||+ +.+||+|.+.+|.|+|.+ .+. .+..++ +.+ .+....
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~~gciPsk~l~~~a~~~~~~~-~~~-------~~g~~~- 71 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVIRGCVPKKLMVYGSTFGGEFE-DAA-------GYGWTV- 71 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeecCCcCchHHHHHHHHHHHHHh-hhH-------hcCcCC-
Confidence 48999999999999999999999999999998 579999999999999722 111 111111 001 111100
Q ss_pred CCCCCCCCCCHH-----------HHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeE
Q 044575 90 KGRDVRRFPGHK-----------ELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKV 158 (454)
Q Consensus 90 ~~~~~~~~~~~~-----------~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 158 (454)
... -.... ++.++++...++.++. +. ..++..++.. ...+. .++.
T Consensus 72 ---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~--~~-~g~~~~v~~~------------~v~v~-~~g~---- 127 (446)
T TIGR01424 72 ---GKA-RFDWKKLLQKKDDEIARLSGLYKRLLANAGVE--LL-EGRARLVGPN------------TVEVL-QDGT---- 127 (446)
T ss_pred ---CCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE--EE-EEEEEEecCC------------EEEEe-cCCe----
Confidence 000 01111 2334445555555655 33 3356555432 33332 2222
Q ss_pred EEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575 159 VEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL 238 (454)
Q Consensus 159 ~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~ 238 (454)
++.||+|||||| +.|..|++||.+.. ..+...... ...+++++|||+|.+|+|+|..+++.+.+|+++++.+
T Consensus 128 -~~~~d~lIiATG--s~p~~p~i~G~~~~----~~~~~~~~l-~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~ 199 (446)
T TIGR01424 128 -TYTAKKILIAVG--GRPQKPNLPGHELG----ITSNEAFHL-PTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGE 199 (446)
T ss_pred -EEEcCEEEEecC--CcCCCCCCCCccce----echHHhhcc-cccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 689999999999 89999999987531 111111111 1236899999999999999999999999999999988
Q ss_pred CcCccchh--------hhcc-CCCeEEcCceeEEecC--C-cEEEeCCCEEeeceEEEccCcccCCcCCC---------C
Q 044575 239 NISEGLSK--------VISK-HNNLHLHPQIDCLRED--G-RVTFVDGCWVTADTILYCTGYSYSFPFLD---------T 297 (454)
Q Consensus 239 ~~~~~~~~--------~l~~-~~~i~~~~~v~~v~~~--~-~v~~~dG~~i~~D~vI~atG~~~~~~~l~---------~ 297 (454)
.+.+.+.+ .+.+ .++++.+..|+++..+ + .+.+.+|+++++|.||+|+|++|+...+. +
T Consensus 200 ~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~ 279 (446)
T TIGR01424 200 LILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELND 279 (446)
T ss_pred CCCcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECC
Confidence 76544322 2222 3578888889888642 2 45667888999999999999999987532 3
Q ss_pred CCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCC
Q 044575 298 KGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKR 354 (454)
Q Consensus 298 ~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~ 354 (454)
+|.+.+|++.+ ++.|++|++||+.... ..+.|..||+.+|.++.|..
T Consensus 280 ~G~i~vd~~~~----------Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~~i~~~~ 327 (446)
T TIGR01424 280 AGAIAVDEYSR----------TSIPSIYAVGDVTDRINLTPVAIMEATCFANTEFGNN 327 (446)
T ss_pred CCcEEeCCCCc----------cCCCCEEEeeccCCCccchhHHHHHHHHHHHHHhcCC
Confidence 45566666544 4579999999998654 34799999999999998753
No 10
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=2.4e-33 Score=283.66 Aligned_cols=298 Identities=19% Similarity=0.229 Sum_probs=202.9
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccc--cccceecCCccccccCCCCCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSV--YASLRLTSPREIMGYTDFPFVL 88 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 88 (454)
..+||+||||||||++||..|++.|.+|+|||+++.+||+|.+.+|.|++.+.... +..... ...|.+++.
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~-----~~~~~~~~~-- 76 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQ-----NPLYSSYRV-- 76 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhh-----hhhhcccCC--
Confidence 45899999999999999999999999999999988999999999999876222111 111000 000111111
Q ss_pred CCCCCCCCCCCHHHHHHH-----------HHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCe
Q 044575 89 KKGRDVRRFPGHKELWLY-----------LKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADK 157 (454)
Q Consensus 89 ~~~~~~~~~~~~~~~~~y-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 157 (454)
....+..++.++ +....++.++. +..+ ++..++.. .++|...++ .
T Consensus 77 ------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g-~~~~~~~~------------~~~v~~~~g---~ 132 (461)
T PRK05249 77 ------KLRITFADLLARADHVINKQVEVRRGQYERNRVD--LIQG-RARFVDPH------------TVEVECPDG---E 132 (461)
T ss_pred ------cCccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCE--EEEE-EEEEecCC------------EEEEEeCCC---c
Confidence 111233444433 33334444544 3333 33333321 556655432 2
Q ss_pred EEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEeccc
Q 044575 158 VVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKS 237 (454)
Q Consensus 158 ~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~ 237 (454)
..++.||+|||||| +.|..|++++... ..+.++...... ...+++|+|||+|.+|+|+|..+++.|.+|+++++.
T Consensus 133 ~~~~~~d~lviATG--s~p~~p~~~~~~~--~~v~~~~~~~~~-~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~ 207 (461)
T PRK05249 133 VETLTADKIVIATG--SRPYRPPDVDFDH--PRIYDSDSILSL-DHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTR 207 (461)
T ss_pred eEEEEcCEEEEcCC--CCCCCCCCCCCCC--CeEEcHHHhhch-hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 34689999999999 8999887766432 123333332222 234689999999999999999999999999999999
Q ss_pred CCcCccchh--------hhcc-CCCeEEcCceeEEecC--C-cEEEeCCCEEeeceEEEccCcccCCcCC--C-------
Q 044575 238 LNISEGLSK--------VISK-HNNLHLHPQIDCLRED--G-RVTFVDGCWVTADTILYCTGYSYSFPFL--D------- 296 (454)
Q Consensus 238 ~~~~~~~~~--------~l~~-~~~i~~~~~v~~v~~~--~-~v~~~dG~~i~~D~vI~atG~~~~~~~l--~------- 296 (454)
+.+.+.+++ .+.+ .++++.+..|+++..+ + .+++.+|+++++|.||+|+|++|+.+.+ .
T Consensus 208 ~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~ 287 (461)
T PRK05249 208 DRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEAD 287 (461)
T ss_pred CCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEec
Confidence 887554332 2222 3578888889988632 2 3556788899999999999999998754 2
Q ss_pred CCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCC
Q 044575 297 TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKR 354 (454)
Q Consensus 297 ~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~ 354 (454)
+.|.+.+|++.+ ++.|++|++||+...+ ..+.|..||+.+|.++.|..
T Consensus 288 ~~G~i~vd~~~~----------t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~~ 336 (461)
T PRK05249 288 SRGQLKVNENYQ----------TAVPHIYAVGDVIGFPSLASASMDQGRIAAQHAVGEA 336 (461)
T ss_pred CCCcEeeCCCcc----------cCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCCC
Confidence 345566665544 4569999999988543 45789999999999999863
No 11
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=1.3e-33 Score=284.37 Aligned_cols=291 Identities=19% Similarity=0.260 Sum_probs=198.4
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCc-cccc-cccceecCCccccccCCCCCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEV-HSSV-YASLRLTSPREIMGYTDFPFVL 88 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~ 88 (454)
..+||+||||||||++||..|++.|.+|+|||+. .+||+|.+.+|.|++.+ .... ...++...+. +.+. ..
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~--~g~~---~~- 75 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPG--YGFD---VT- 75 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHh--cCCC---CC-
Confidence 4589999999999999999999999999999985 89999999999998721 1111 1111110000 0110 00
Q ss_pred CCCCCCCCCCCHHHHHHH-----------HHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCe
Q 044575 89 KKGRDVRRFPGHKELWLY-----------LKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADK 157 (454)
Q Consensus 89 ~~~~~~~~~~~~~~~~~y-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 157 (454)
. .-....++.++ +.+...+.++. +..+ ++..++ ..+|++ ++.
T Consensus 76 -----~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~g-~~~~v~--------------~~~v~~-~g~--- 128 (450)
T PRK06116 76 -----E-NKFDWAKLIANRDAYIDRLHGSYRNGLENNGVD--LIEG-FARFVD--------------AHTVEV-NGE--- 128 (450)
T ss_pred -----C-CCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEEcc--------------CCEEEE-CCE---
Confidence 0 00112222222 22333334544 3333 344443 334555 322
Q ss_pred EEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEeccc
Q 044575 158 VVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKS 237 (454)
Q Consensus 158 ~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~ 237 (454)
++.||+|||||| +.|+.|++||.+. ..++....... ..+++|+|||+|.+|+|+|..+++.+.+|+++.+.
T Consensus 129 --~~~~d~lViATG--s~p~~p~i~g~~~----~~~~~~~~~~~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~ 199 (450)
T PRK06116 129 --RYTADHILIATG--GRPSIPDIPGAEY----GITSDGFFALE-ELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRG 199 (450)
T ss_pred --EEEeCEEEEecC--CCCCCCCCCCcce----eEchhHhhCcc-ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 689999999999 8999999998753 23333222221 23589999999999999999999999999999998
Q ss_pred CCcCccchh--------hhcc-CCCeEEcCceeEEecC--C--cEEEeCCCEEeeceEEEccCcccCCcCCC--------
Q 044575 238 LNISEGLSK--------VISK-HNNLHLHPQIDCLRED--G--RVTFVDGCWVTADTILYCTGYSYSFPFLD-------- 296 (454)
Q Consensus 238 ~~~~~~~~~--------~l~~-~~~i~~~~~v~~v~~~--~--~v~~~dG~~i~~D~vI~atG~~~~~~~l~-------- 296 (454)
+.+.+.+.+ .+.+ .++++.++.|.++..+ + .+.+.+|+++++|.||+|+|++|+.+.+.
T Consensus 200 ~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~ 279 (450)
T PRK06116 200 DAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKL 279 (450)
T ss_pred CCCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceE
Confidence 876443322 2322 3578888899998643 2 35667898999999999999999988532
Q ss_pred -CCCceeeCCCCcccccCcccCCCCCCCceEecccccc-cchhHHHHHHHHHHHHHcCCC
Q 044575 297 -TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKL-IGFPFFESQAKWIAQLLSGKR 354 (454)
Q Consensus 297 -~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~-~~~~~a~~qa~~~a~~i~g~~ 354 (454)
++|.+.+|++.+ ++.|++|++||+... ...+.|..||+.+|.++.|..
T Consensus 280 ~~~G~i~vd~~~~----------Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~ 329 (450)
T PRK06116 280 NEKGYIIVDEYQN----------TNVPGIYAVGDVTGRVELTPVAIAAGRRLSERLFNNK 329 (450)
T ss_pred CCCCcEecCCCCC----------cCCCCEEEEeecCCCcCcHHHHHHHHHHHHHHHhCCC
Confidence 345555655443 457999999999854 345799999999999998853
No 12
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=5.1e-33 Score=280.97 Aligned_cols=300 Identities=18% Similarity=0.228 Sum_probs=201.3
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCcc-ccccccceecCCccccccCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVH-SSVYASLRLTSPREIMGYTDFPFVLKK 90 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (454)
.+||+||||||||++||..|++.|.+|+|||+. .+||+|.+.+|+|++.+. +..........+. ...++.
T Consensus 6 ~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~-~~g~~~------- 76 (468)
T PRK14694 6 NLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPF-DDGLSA------- 76 (468)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceecCCccccHHHHHHHHHHHHHhhccc-cCCccc-------
Confidence 589999999999999999999999999999985 799999999999987221 1110000001110 001100
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhC-------CCc--cE-EeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEE
Q 044575 91 GRDVRRFPGHKELWLYLKDFCQRFG-------LRE--MI-RFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVE 160 (454)
Q Consensus 91 ~~~~~~~~~~~~~~~yl~~~~~~~~-------~~~--~i-~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 160 (454)
..+ -++..++.++.++....+. +.. .+ ....+|..++.. .|+|++.+++ ..+
T Consensus 77 --~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~------------~~~V~~~~g~---~~~ 138 (468)
T PRK14694 77 --QAP-VVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDER------------TLTVTLNDGG---EQT 138 (468)
T ss_pred --CCC-ccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCC------------EEEEEecCCC---eEE
Confidence 000 1234555555554433321 100 11 223355555432 7888886542 236
Q ss_pred EEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575 161 EVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI 240 (454)
Q Consensus 161 ~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~ 240 (454)
+.||+|||||| +.|+.|++||++... .+++...... ...+++++|||+|++|+|+|..|++.+.+|+++.+. ++
T Consensus 139 ~~~d~lViATG--s~p~~p~i~G~~~~~--~~~~~~~~~l-~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~-~~ 212 (468)
T PRK14694 139 VHFDRAFIGTG--ARPAEPPVPGLAETP--YLTSTSALEL-DHIPERLLVIGASVVALELAQAFARLGSRVTVLARS-RV 212 (468)
T ss_pred EECCEEEEeCC--CCCCCCCCCCCCCCc--eEcchhhhch-hcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC-CC
Confidence 89999999999 899999999986532 3333322111 123689999999999999999999999999999875 33
Q ss_pred Ccc----c----hhhhcc-CCCeEEcCceeEEecCC-cEEE-eCCCEEeeceEEEccCcccCCcCCC--------CCCce
Q 044575 241 SEG----L----SKVISK-HNNLHLHPQIDCLREDG-RVTF-VDGCWVTADTILYCTGYSYSFPFLD--------TKGIV 301 (454)
Q Consensus 241 ~~~----~----~~~l~~-~~~i~~~~~v~~v~~~~-~v~~-~dG~~i~~D~vI~atG~~~~~~~l~--------~~g~i 301 (454)
.+. + .+.+.+ .++++.+..++++..++ .+.+ .++.++++|.||+|+|.+|+.+++. ++|.+
T Consensus 213 l~~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i 292 (468)
T PRK14694 213 LSQEDPAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAGTLRAEQLLVATGRTPNTENLNLESIGVETERGAI 292 (468)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccCCCCCcCCCCchhcCcccCCCeE
Confidence 222 2 222322 35788888899887543 2222 2455799999999999999988753 23456
Q ss_pred eeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCC
Q 044575 302 VVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKR 354 (454)
Q Consensus 302 ~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~ 354 (454)
.+|++.. ++.|++|++||+...+ ..+.|..||+.+|.++.|..
T Consensus 293 ~vd~~~~----------Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~~~~ 336 (468)
T PRK14694 293 RIDEHLQ----------TTVSGIYAAGDCTDQPQFVYVAAAGGSRAAINMTGGD 336 (468)
T ss_pred eeCCCcc----------cCCCCEEEEeecCCCcccHHHHHHHHHHHHHHhcCCC
Confidence 6665544 4579999999998654 44789999999999998763
No 13
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=2e-33 Score=281.91 Aligned_cols=289 Identities=18% Similarity=0.249 Sum_probs=195.5
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCcccc--ccccceecCCccccccCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSS--VYASLRLTSPREIMGYTDFPFVLK 89 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 89 (454)
.+||+||||||||++||..|++.|.+|+|||+. .+||+|.+.+|.|+|.+... .+...+ .. ..+.++.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~-~~-------~~~g~~~- 71 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDLAERMH-DA-------ADYGFYQ- 71 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceeccCcCccHHHHHHHHHHHHHh-HH-------hhcCccc-
Confidence 589999999999999999999999999999994 69999999999998722111 111111 00 0111110
Q ss_pred CCCCCCCCCCHHHHHHH-----------HHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeE
Q 044575 90 KGRDVRRFPGHKELWLY-----------LKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKV 158 (454)
Q Consensus 90 ~~~~~~~~~~~~~~~~y-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 158 (454)
....-....++.++ +....++.++. +..++.+. .+ ..+|.+. +.
T Consensus 72 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~g~~~~----~~-----------~~~v~v~-~~---- 126 (450)
T TIGR01421 72 ---NLENTFNWPELKEKRDAYVDRLNGIYQKNLEKNKVD--VIFGHARF----TK-----------DGTVEVN-GR---- 126 (450)
T ss_pred ---CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEEEEEE----cc-----------CCEEEEC-CE----
Confidence 00001122333333 22333333444 44444321 11 2235442 21
Q ss_pred EEEEeCEEEEccCCCCCCCCC-CCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEeccc
Q 044575 159 VEEVFDAVVVATGHYSYPRLP-SIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKS 237 (454)
Q Consensus 159 ~~~~~d~vViAtG~~~~p~~p-~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~ 237 (454)
.+.||+|||||| +.|+.| ++||.+.. ..+..+..... .+++|+|||+|.+|+|+|..+++.|++||+++|.
T Consensus 127 -~~~~d~vIiAtG--s~p~~p~~i~g~~~~----~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~ 198 (450)
T TIGR01421 127 -DYTAPHILIATG--GKPSFPENIPGAELG----TDSDGFFALEE-LPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRH 198 (450)
T ss_pred -EEEeCEEEEecC--CCCCCCCCCCCCcee----EcHHHhhCccc-cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Confidence 689999999999 899999 89987531 22222222211 3589999999999999999999999999999999
Q ss_pred CCcCccchhh--------hc-cCCCeEEcCceeEEecC--C--cEEEeCC-CEEeeceEEEccCcccCCcCCC-------
Q 044575 238 LNISEGLSKV--------IS-KHNNLHLHPQIDCLRED--G--RVTFVDG-CWVTADTILYCTGYSYSFPFLD------- 296 (454)
Q Consensus 238 ~~~~~~~~~~--------l~-~~~~i~~~~~v~~v~~~--~--~v~~~dG-~~i~~D~vI~atG~~~~~~~l~------- 296 (454)
+++.+.+++. +. ..++++.+..|+++..+ + .+++++| +.+++|.||+|+|++|++++|.
T Consensus 199 ~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~ 278 (450)
T TIGR01421 199 ERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIK 278 (450)
T ss_pred CCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcE
Confidence 8775544322 22 23578888889988643 2 3667778 5689999999999999988642
Q ss_pred --CCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCC
Q 044575 297 --TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGK 353 (454)
Q Consensus 297 --~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~ 353 (454)
++|.+.+|++.+ ++.|++|++||+...+ ..+.|..||+.+|.++.|.
T Consensus 279 ~~~~G~i~vd~~~~----------T~~p~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~~~ 328 (450)
T TIGR01421 279 LNEKGQIIVDEYQN----------TNVPGIYALGDVVGKVELTPVAIAAGRKLSERLFNG 328 (450)
T ss_pred ECCCCcEEeCCCCc----------CCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHhcC
Confidence 234555555443 4579999999988654 4589999999999999864
No 14
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=4.5e-34 Score=284.85 Aligned_cols=345 Identities=18% Similarity=0.223 Sum_probs=225.8
Q ss_pred cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCC
Q 044575 10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLK 89 (454)
Q Consensus 10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (454)
+++++|||||||+||+.+|+.|.+.+.+|+|||++++. .|..+....
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~------------------~~~~~l~~~--------------- 54 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM------------------LFTPLLPQT--------------- 54 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc------------------chhhhHHHh---------------
Confidence 34679999999999999999998778899999997742 111110000
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEee--cC---CCeEEEEEeC
Q 044575 90 KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKE--KK---ADKVVEEVFD 164 (454)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~--~~---~~~~~~~~~d 164 (454)
.......+++...+...++.++.. ....+|++|+.... +|++.. .. .+...++.||
T Consensus 55 ----~~g~~~~~~~~~~~~~~~~~~~~~---~i~~~V~~Id~~~~------------~v~~~~~~~~~~~~~~g~~i~yD 115 (424)
T PTZ00318 55 ----TTGTLEFRSICEPVRPALAKLPNR---YLRAVVYDVDFEEK------------RVKCGVVSKSNNANVNTFSVPYD 115 (424)
T ss_pred ----cccCCChHHhHHHHHHHhccCCeE---EEEEEEEEEEcCCC------------EEEEecccccccccCCceEecCC
Confidence 000111244555555555555543 45679999987632 344411 10 0112368999
Q ss_pred EEEEccCCCCCCCCCCCCCcCCcc--ceeE-EeecCC-----------CC-----CCCCCCeEEEEcCCCCHHHHHHHHh
Q 044575 165 AVVVATGHYSYPRLPSIKGMDKWK--RKQM-HSHIYR-----------VP-----EPFRNEVVVVVGNSLSGQDISMELV 225 (454)
Q Consensus 165 ~vViAtG~~~~p~~p~i~G~~~~~--~~~~-~~~~~~-----------~~-----~~~~~k~vvVVG~G~sg~e~A~~l~ 225 (454)
+|||||| +.|..|.+||..+.. ...+ +....+ .+ ...+.++|+|||+|++|+|+|.+|+
T Consensus 116 ~LViAtG--s~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~ 193 (424)
T PTZ00318 116 KLVVAHG--ARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELA 193 (424)
T ss_pred EEEECCC--cccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHH
Confidence 9999999 899999999975421 0000 000000 00 0112358999999999999999998
Q ss_pred hh--------------cCeEEEecccCCcCccchhh--------hcc-CCCeEEcCceeEEecCCcEEEeCCCEEeeceE
Q 044575 226 EV--------------AKEVHLSAKSLNISEGLSKV--------ISK-HNNLHLHPQIDCLREDGRVTFVDGCWVTADTI 282 (454)
Q Consensus 226 ~~--------------~~~V~l~~r~~~~~~~~~~~--------l~~-~~~i~~~~~v~~v~~~~~v~~~dG~~i~~D~v 282 (454)
+. +.+|+++++.+.+.+.+.+. +.+ .++++.+..|+++.++ .|+++||+++++|.+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~-~v~~~~g~~i~~d~v 272 (424)
T PTZ00318 194 DFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRTKTAVKEVLDK-EVVLKDGEVIPTGLV 272 (424)
T ss_pred HHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeEEEEeCC-EEEECCCCEEEccEE
Confidence 63 57899999988775544332 222 3578889999999766 588999999999999
Q ss_pred EEccCcccCCcCC-------CCCCceeeCCCCcccccCcccCCCCCCCceEecccccc------cchhHHHHHHHHHHHH
Q 044575 283 LYCTGYSYSFPFL-------DTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKL------IGFPFFESQAKWIAQL 349 (454)
Q Consensus 283 I~atG~~~~~~~l-------~~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~------~~~~~a~~qa~~~a~~ 349 (454)
|+|+|.+|+ +++ +++|.|.||++++. ++.|++|++||+... ...+.|..||+++|++
T Consensus 273 i~~~G~~~~-~~~~~~~l~~~~~G~I~Vd~~l~~---------~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~n 342 (424)
T PTZ00318 273 VWSTGVGPG-PLTKQLKVDKTSRGRISVDDHLRV---------KPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKE 342 (424)
T ss_pred EEccCCCCc-chhhhcCCcccCCCcEEeCCCccc---------CCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHH
Confidence 999999998 443 23567777776542 346999999999853 2346899999999988
Q ss_pred HcC----CC-CCCCHH---HHHHHHHHHHhhhhhcCCCCCcccccccHHHHHHHHH-HcCCCCchHHHHHHHHHHhhCCc
Q 044575 350 LSG----KR-TLPSWD---QMMQSVKEFYHSRDVAGIPKHNTHDIANFEYCDRYAD-QIGFPHLEEWRKGLCISALVNSD 420 (454)
Q Consensus 350 i~g----~~-~lp~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~l~~-~~g~~~~~~~~~~l~~~~~~~~~ 420 (454)
|.+ +. ..|+.. .++..++...+.... -.+...++.++++| .+++..++.|++++. ++++|.
T Consensus 343 i~~~l~g~~~~~~~~~~~~g~~~~lG~~~av~~~--------~~~~~~g~~a~~~~~~~~~~~~~~~~~~~~--~~~~w~ 412 (424)
T PTZ00318 343 FNNELKGKPMSKPFVYRSLGSLAYLGNYSAIVQL--------GAFDLSGFKALLFWRSAYLTILGSWRSKLY--VLVNWA 412 (424)
T ss_pred HHHHhcCCCCCCCCeecCCceEEEecCCceEEEc--------CCceEecHHHHHHHHHHHHHHhhhhhHHHH--HHHHHH
Confidence 754 32 233321 111111111000000 00124588899998 556677889999999 999999
Q ss_pred cccccccCC
Q 044575 421 ANLETYRDS 429 (454)
Q Consensus 421 ~~~~~~r~~ 429 (454)
+++++.|+.
T Consensus 413 ~~~~~~~~~ 421 (424)
T PTZ00318 413 GTAIFGRDI 421 (424)
T ss_pred HHHhcCCcc
Confidence 988888864
No 15
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=4.8e-33 Score=280.77 Aligned_cols=298 Identities=19% Similarity=0.199 Sum_probs=196.2
Q ss_pred cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCc-c-ccccccceecCCccccccCCCCCC
Q 044575 10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEV-H-SSVYASLRLTSPREIMGYTDFPFV 87 (454)
Q Consensus 10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~ 87 (454)
+.++||+||||||||++||..|++.|.+|+|||+.+.+||+|.+.+|.|++.+ . ...+..++. .......+..
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~-~~~~g~~~~~---- 76 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKA-LAEHGIVFGE---- 76 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhh-hhhcCcccCC----
Confidence 34599999999999999999999999999999998889999999999998721 1 111111110 0000000000
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHH-----------HHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCC
Q 044575 88 LKKGRDVRRFPGHKELWLYLKDFC-----------QRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKAD 156 (454)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~-----------~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~ 156 (454)
......++.++.+... +..++. +.. .++..++. . ...|...++
T Consensus 77 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~--~~~-g~a~~~~~---~---------~v~v~~~~g--- 130 (471)
T PRK06467 77 --------PKIDIDKMRARKEKVVKQLTGGLAGMAKGRKVT--VVN-GLGKFTGG---N---------TLEVTGEDG--- 130 (471)
T ss_pred --------CCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEE-EEEEEccC---C---------EEEEecCCC---
Confidence 0122344444443332 333443 322 23333221 1 333433222
Q ss_pred eEEEEEeCEEEEccCCCCCCC-CCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEec
Q 044575 157 KVVEEVFDAVVVATGHYSYPR-LPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSA 235 (454)
Q Consensus 157 ~~~~~~~d~vViAtG~~~~p~-~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~ 235 (454)
...++.||+|||||| +.|. .|.+++... .++.+.+..... ..+++++|||+|++|+|+|..+++.|.+||+++
T Consensus 131 ~~~~~~~d~lViATG--s~p~~~p~~~~~~~---~v~~~~~~~~~~-~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~ 204 (471)
T PRK06467 131 KTTVIEFDNAIIAAG--SRPIQLPFIPHDDP---RIWDSTDALELK-EVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVE 204 (471)
T ss_pred ceEEEEcCEEEEeCC--CCCCCCCCCCCCCC---cEEChHHhhccc-cCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEe
Confidence 234789999999999 8887 444554321 123232222221 235899999999999999999999999999999
Q ss_pred ccCCcCccchh--------hhccCCCeEEcCceeEEecC--C-cEEEeCC----CEEeeceEEEccCcccCCcCCC----
Q 044575 236 KSLNISEGLSK--------VISKHNNLHLHPQIDCLRED--G-RVTFVDG----CWVTADTILYCTGYSYSFPFLD---- 296 (454)
Q Consensus 236 r~~~~~~~~~~--------~l~~~~~i~~~~~v~~v~~~--~-~v~~~dG----~~i~~D~vI~atG~~~~~~~l~---- 296 (454)
+.+++.+.+++ .+.+..+++++..|+++..+ + .+.+.++ +++++|.||+|+|++|+.+++.
T Consensus 205 ~~~~il~~~d~~~~~~~~~~l~~~v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~ 284 (471)
T PRK06467 205 MFDQVIPAADKDIVKVFTKRIKKQFNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKA 284 (471)
T ss_pred cCCCCCCcCCHHHHHHHHHHHhhceEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhc
Confidence 99887554432 23233678888889888633 2 3444443 3589999999999999988642
Q ss_pred -----CCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCC
Q 044575 297 -----TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKR 354 (454)
Q Consensus 297 -----~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~ 354 (454)
++|.+.+|++.+ ++.|++|++||+...+ ..+.|..||+.+|.++.|..
T Consensus 285 gl~~~~~G~I~Vd~~~~----------t~~p~VyAiGDv~~~~~la~~A~~eG~~aa~~i~g~~ 338 (471)
T PRK06467 285 GVEVDERGFIRVDKQCR----------TNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGKK 338 (471)
T ss_pred CceECCCCcEeeCCCcc----------cCCCCEEEehhhcCCcccHHHHHHHHHHHHHHHcCCC
Confidence 345566666554 4579999999997543 45899999999999998853
No 16
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=4.5e-33 Score=279.27 Aligned_cols=296 Identities=20% Similarity=0.222 Sum_probs=197.8
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCcc-cc-ccccceecCCccccccCCCCCCCCC
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVH-SS-VYASLRLTSPREIMGYTDFPFVLKK 90 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (454)
+||+||||||+|.+||.. +.|.+|+|||+ +.+||+|.+.+|+|+|.+. .. .+...+. .+. ++.. .
T Consensus 2 yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~-~~~--~g~~-----~-- 68 (451)
T PRK07846 2 YDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGGTCLNVGCIPTKMFVYAADVARTIRE-AAR--LGVD-----A-- 68 (451)
T ss_pred CCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCcccCcCcchhHHHHHHHHHHHHHHH-HHh--CCcc-----C--
Confidence 799999999999998876 46999999998 5799999999999998221 11 1111111 010 0000 0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCC-ccEE----eCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCE
Q 044575 91 GRDVRRFPGHKELWLYLKDFCQRFGLR-EMIR----FNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDA 165 (454)
Q Consensus 91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~-~~i~----~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~ 165 (454)
. ..-....++.++.+...+++.-. .... .+..+..=. ..+.+ ..+|++.++. ++.||+
T Consensus 69 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-----a~~~~----~~~V~v~~g~-----~~~~d~ 131 (451)
T PRK07846 69 --E-LDGVRWPDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGH-----ARFIG----PKTLRTGDGE-----EITADQ 131 (451)
T ss_pred --C-CCcCCHHHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEE-----EEEec----CCEEEECCCC-----EEEeCE
Confidence 0 00124566666665555543111 0000 111111100 00000 4457765543 689999
Q ss_pred EEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccch
Q 044575 166 VVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLS 245 (454)
Q Consensus 166 vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~ 245 (454)
|||||| +.|+.|++||.+.. ....+.+.... ...+++++|||+|++|+|+|..+++.|.+|+++.+.+.+.+.++
T Consensus 132 lViATG--s~p~~p~i~g~~~~--~~~~~~~~~~l-~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~~d 206 (451)
T PRK07846 132 VVIAAG--SRPVIPPVIADSGV--RYHTSDTIMRL-PELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLD 206 (451)
T ss_pred EEEcCC--CCCCCCCCCCcCCc--cEEchHHHhhh-hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccC
Confidence 999999 89999999986532 11222221111 12458999999999999999999999999999999887754332
Q ss_pred h--------hhccCCCeEEcCceeEEecCC---cEEEeCCCEEeeceEEEccCcccCCcCCC---------CCCceeeCC
Q 044575 246 K--------VISKHNNLHLHPQIDCLREDG---RVTFVDGCWVTADTILYCTGYSYSFPFLD---------TKGIVVVDD 305 (454)
Q Consensus 246 ~--------~l~~~~~i~~~~~v~~v~~~~---~v~~~dG~~i~~D~vI~atG~~~~~~~l~---------~~g~i~v~~ 305 (454)
+ .+....+++++..+++++.++ .+.+.+|+++++|.||+|+|++|+.+++. ++|.+.+|+
T Consensus 207 ~~~~~~l~~l~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~ 286 (451)
T PRK07846 207 DDISERFTELASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDE 286 (451)
T ss_pred HHHHHHHHHHHhcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECC
Confidence 2 223345678888898886443 35667888999999999999999998853 335555665
Q ss_pred CCcccccCcccCCCCCCCceEecccccccc-hhHHHHHHHHHHHHHcCC
Q 044575 306 DRVGPLYEHTFPPSLAPSLSFVGIPRKLIG-FPFFESQAKWIAQLLSGK 353 (454)
Q Consensus 306 ~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~-~~~a~~qa~~~a~~i~g~ 353 (454)
+.+ ++.|++|++||+...+. .+.|..||++++.++.|.
T Consensus 287 ~~~----------Ts~p~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~ 325 (451)
T PRK07846 287 YQR----------TSAEGVFALGDVSSPYQLKHVANHEARVVQHNLLHP 325 (451)
T ss_pred Ccc----------cCCCCEEEEeecCCCccChhHHHHHHHHHHHHHcCC
Confidence 544 56799999999987543 479999999999999875
No 17
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=1.1e-32 Score=278.52 Aligned_cols=294 Identities=16% Similarity=0.152 Sum_probs=197.2
Q ss_pred ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccc-c-ccccceecCCccccccCCCCC
Q 044575 9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHS-S-VYASLRLTSPREIMGYTDFPF 86 (454)
Q Consensus 9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~ 86 (454)
|+.++||+||||||||++||..|++.|++|+|||+. .+||+|.+.+|+|+|.+.. . .+...+. .. .+ +++.
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~-~~--~~---g~~~ 74 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVNTGCVPTKTLIASARAAHLARR-AA--EY---GVSV 74 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceeccccCcHHHHHHHHHHHHHHHH-HH--hc---Cccc
Confidence 345699999999999999999999999999999985 7999999999999872211 1 1111110 00 00 1110
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHH-----------Hh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecC
Q 044575 87 VLKKGRDVRRFPGHKELWLYLKDFCQ-----------RF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKK 154 (454)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~yl~~~~~-----------~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~ 154 (454)
+ ...-....++.++.++..+ +. ++. +..++.+. + + ..+|++. +
T Consensus 75 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--v~~g~~~~-~---~-----------~~~v~v~-~- 129 (463)
T PRK06370 75 G------GPVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVD--VFRGHARF-E---S-----------PNTVRVG-G- 129 (463)
T ss_pred C------ccCccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcE--EEEEEEEE-c---c-----------CCEEEEC-c-
Confidence 0 0001233444444433322 22 333 33443321 1 1 2345542 2
Q ss_pred CCeEEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEe
Q 044575 155 ADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLS 234 (454)
Q Consensus 155 ~~~~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~ 234 (454)
.++.||+|||||| +.|+.|++||.+... .+++....... ..+++|+|||+|.+|+|+|..+++.|.+|+++
T Consensus 130 ----~~~~~d~lViATG--s~p~~p~i~G~~~~~--~~~~~~~~~~~-~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli 200 (463)
T PRK06370 130 ----ETLRAKRIFINTG--ARAAIPPIPGLDEVG--YLTNETIFSLD-ELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVI 200 (463)
T ss_pred ----EEEEeCEEEEcCC--CCCCCCCCCCCCcCc--eEcchHhhCcc-ccCCEEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence 1689999999999 899999999976522 23333322221 24689999999999999999999999999999
Q ss_pred cccCCcCccch--------hhhcc-CCCeEEcCceeEEecCC---cEEEe--C-CCEEeeceEEEccCcccCCcCC--C-
Q 044575 235 AKSLNISEGLS--------KVISK-HNNLHLHPQIDCLREDG---RVTFV--D-GCWVTADTILYCTGYSYSFPFL--D- 296 (454)
Q Consensus 235 ~r~~~~~~~~~--------~~l~~-~~~i~~~~~v~~v~~~~---~v~~~--d-G~~i~~D~vI~atG~~~~~~~l--~- 296 (454)
++.+.+.+.+. +.+.+ .++++.+..|.++..++ .+.+. + ++++++|.||+|+|++|+.+.| .
T Consensus 201 ~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~ 280 (463)
T PRK06370 201 ERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEA 280 (463)
T ss_pred EcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchh
Confidence 99887754332 22222 35788888999987542 23332 2 4478999999999999998743 2
Q ss_pred ------CCCceeeCCCCcccccCcccCCCCCCCceEecccccccc-hhHHHHHHHHHHHHHcCC
Q 044575 297 ------TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIG-FPFFESQAKWIAQLLSGK 353 (454)
Q Consensus 297 ------~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~-~~~a~~qa~~~a~~i~g~ 353 (454)
++|.+.+|++.+ ++.|++|++||+...+. ...|..||+.+|+++.|.
T Consensus 281 ~g~~~~~~G~i~vd~~l~----------t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~ 334 (463)
T PRK06370 281 AGVETDARGYIKVDDQLR----------TTNPGIYAAGDCNGRGAFTHTAYNDARIVAANLLDG 334 (463)
T ss_pred hCceECCCCcEeECcCCc----------CCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 345566666544 45799999999986544 368999999999999875
No 18
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=3.6e-32 Score=262.17 Aligned_cols=282 Identities=17% Similarity=0.217 Sum_probs=202.9
Q ss_pred cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCC
Q 044575 10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLK 89 (454)
Q Consensus 10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (454)
.+.+||+|||||||||+||..|++.|+++++||+. ..||.+..... +.++|
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~~~------------------------~~~~~---- 54 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTTE------------------------VENWP---- 54 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecCce------------------------ECCCC----
Confidence 35689999999999999999999999999999964 67887753210 00111
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEc
Q 044575 90 KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA 169 (454)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViA 169 (454)
..+...+..++.+++.++++.++.. +.++ +|.+|+.... .|+++... . .+.||+||||
T Consensus 55 ---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~v~~v~~~~~----------~~~v~~~~-~-----~~~~d~vilA 112 (321)
T PRK10262 55 ---GDPNDLTGPLLMERMHEHATKFETE--IIFD-HINKVDLQNR----------PFRLTGDS-G-----EYTCDALIIA 112 (321)
T ss_pred ---CCCCCCCHHHHHHHHHHHHHHCCCE--EEee-EEEEEEecCC----------eEEEEecC-C-----EEEECEEEEC
Confidence 1122345678899999999988765 5554 5777776432 67776432 1 5789999999
Q ss_pred cCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCcc--ch--
Q 044575 170 TGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEG--LS-- 245 (454)
Q Consensus 170 tG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~--~~-- 245 (454)
|| +.|+.|++||.+.+.+..+|...+.......+++|+|||+|.+|+|+|..|++.+++|+++.|.+.+... +.
T Consensus 113 tG--~~~~~~~i~g~~~~~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~~~~~~~~ 190 (321)
T PRK10262 113 TG--ASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKR 190 (321)
T ss_pred CC--CCCCCCCCCCHHHcCCCcEEEeecCCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCCCHHHHHH
Confidence 99 8899999999877777778877776666678999999999999999999999999999999998765321 22
Q ss_pred --hhhccC-CCeEEcCceeEEecCC----cEEEeCC------CEEeeceEEEccCcccCCcCCC-----CCCceeeCCCC
Q 044575 246 --KVISKH-NNLHLHPQIDCLREDG----RVTFVDG------CWVTADTILYCTGYSYSFPFLD-----TKGIVVVDDDR 307 (454)
Q Consensus 246 --~~l~~~-~~i~~~~~v~~v~~~~----~v~~~dG------~~i~~D~vI~atG~~~~~~~l~-----~~g~i~v~~~~ 307 (454)
+.+.+. ++++.+..++++.+++ .|++.++ +++++|.||+++|++|+..++. ++|.+.+|+..
T Consensus 191 ~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~~l~~~~g~i~vd~~~ 270 (321)
T PRK10262 191 LMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGI 270 (321)
T ss_pred HHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhccccccCCEEEECCCC
Confidence 222233 4677888899997653 3666543 3688999999999999987643 23556666522
Q ss_pred cccccCcccCCCCCCCceEeccccccc--chhHHHHHHHHHHHH
Q 044575 308 VGPLYEHTFPPSLAPSLSFVGIPRKLI--GFPFFESQAKWIAQL 349 (454)
Q Consensus 308 ~~~~~~~~~~~~~~p~l~~iG~~~~~~--~~~~a~~qa~~~a~~ 349 (454)
. .. +..++.|++|++||+.... ....|..++..+|..
T Consensus 271 ~----~~-~~~t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~ 309 (321)
T PRK10262 271 H----GN-ATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALD 309 (321)
T ss_pred c----cc-ccccCCCCEEECeeccCCCcceEEEEehhHHHHHHH
Confidence 1 00 1124679999999998532 223455555555543
No 19
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=2.4e-32 Score=276.36 Aligned_cols=296 Identities=20% Similarity=0.196 Sum_probs=198.4
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCcc-cc-ccccceecCCccccccCCCCCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVH-SS-VYASLRLTSPREIMGYTDFPFVL 88 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~ 88 (454)
..+||+||||||||++||..|++.|.+|+|||+.. +||+|.+.+|.|++.+. .. .+...+. +..+.+..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~--------~~~~g~~~ 73 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARH--------SEDFGIKA 73 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHH--------HHhcCccc
Confidence 35899999999999999999999999999999976 99999999999987211 11 1111111 01111100
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHH-----------HHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCe
Q 044575 89 KKGRDVRRFPGHKELWLYLKDFC-----------QRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADK 157 (454)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~-----------~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 157 (454)
........++.+|.++.. ++.++. +..+ ++..++.. .++|...++ +
T Consensus 74 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g-~~~~~~~~------------~~~v~~~~~--~- 130 (462)
T PRK06416 74 -----ENVGIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVD--IIRG-EAKLVDPN------------TVRVMTEDG--E- 130 (462)
T ss_pred -----CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEEccCC------------EEEEecCCC--c-
Confidence 011234566666644433 333443 3333 34333221 444443221 1
Q ss_pred EEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEeccc
Q 044575 158 VVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKS 237 (454)
Q Consensus 158 ~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~ 237 (454)
.++.||+|||||| +.|..| ||.+.....+.++...... ...+++++|||+|++|+|+|..+++.|.+|+++++.
T Consensus 131 -~~~~~d~lViAtG--s~p~~~--pg~~~~~~~v~~~~~~~~~-~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~ 204 (462)
T PRK06416 131 -QTYTAKNIILATG--SRPREL--PGIEIDGRVIWTSDEALNL-DEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEAL 204 (462)
T ss_pred -EEEEeCEEEEeCC--CCCCCC--CCCCCCCCeEEcchHhhCc-cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcC
Confidence 3689999999999 788654 5654322222233322221 124589999999999999999999999999999998
Q ss_pred CCcCccchh--------hhc-cCCCeEEcCceeEEecCC---cEEEeCC---CEEeeceEEEccCcccCCcCCC--C---
Q 044575 238 LNISEGLSK--------VIS-KHNNLHLHPQIDCLREDG---RVTFVDG---CWVTADTILYCTGYSYSFPFLD--T--- 297 (454)
Q Consensus 238 ~~~~~~~~~--------~l~-~~~~i~~~~~v~~v~~~~---~v~~~dG---~~i~~D~vI~atG~~~~~~~l~--~--- 297 (454)
+.+.+.+.+ .+. ..++++.+..|+++..++ .+.+.+| +++++|.||+|+|++|+.+++. .
T Consensus 205 ~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl 284 (462)
T PRK06416 205 PRILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGV 284 (462)
T ss_pred CCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCC
Confidence 887554332 222 235788888999987542 2445566 6789999999999999988752 2
Q ss_pred ---CCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCC
Q 044575 298 ---KGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKR 354 (454)
Q Consensus 298 ---~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~ 354 (454)
+|.+.+|++.+ ++.|++|++||+...+ ..+.|..||+.+|.++.|..
T Consensus 285 ~~~~g~i~vd~~~~----------t~~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~~ 335 (462)
T PRK06416 285 KTDRGFIEVDEQLR----------TNVPNIYAIGDIVGGPMLAHKASAEGIIAAEAIAGNP 335 (462)
T ss_pred eecCCEEeECCCCc----------cCCCCEEEeeecCCCcchHHHHHHHHHHHHHHHcCCC
Confidence 34455555443 4579999999998643 45789999999999999864
No 20
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=1.6e-32 Score=276.22 Aligned_cols=308 Identities=19% Similarity=0.205 Sum_probs=198.9
Q ss_pred CCCcEEEECcChHHHHHHHHHHHc-CCcEEEEeeC--------CCCCcccccCCCCCCCC-cccc-ccccceecCCcccc
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKE-GHRVVVLEQN--------HDVGGQWLYDPNTDQTE-VHSS-VYASLRLTSPREIM 79 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~-g~~v~vie~~--------~~~GG~w~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~ 79 (454)
..+||+||||||||..||..+++. |.+|+|||+. ..+||+|.+.+|+|+|. ++.. .+...+.. .. +
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~-~~--~ 78 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRES-AG--F 78 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHh-hc--c
Confidence 358999999999999999999997 8999999984 57999999999999982 2221 11111110 00 0
Q ss_pred ccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeec---C
Q 044575 80 GYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFG--LREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEK---K 154 (454)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~--~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~---~ 154 (454)
++.. . ....-....++.++.+...++.. ....+.-...|.-+.-. +.+.+ ..+|.+... .
T Consensus 79 gi~~---~-----~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~---a~f~~----~~~v~V~~~~~~~ 143 (486)
T TIGR01423 79 GWEF---D-----RSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGW---GALED----KNVVLVRESADPK 143 (486)
T ss_pred Ceec---c-----CCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEE---EEEcc----CCEEEEeeccCCC
Confidence 1000 0 00001233444444444333210 00000000112211111 11111 334555421 1
Q ss_pred CCeEEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhh---cCeE
Q 044575 155 ADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEV---AKEV 231 (454)
Q Consensus 155 ~~~~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~---~~~V 231 (454)
+....++.||+|||||| +.|..|++||.+.. ..+....... ..+++++|||+|++|+|+|..++.+ |.+|
T Consensus 144 ~~~~~~~~~d~lIIATG--s~p~~p~i~G~~~~----~~~~~~~~~~-~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~V 216 (486)
T TIGR01423 144 SAVKERLQAEHILLATG--SWPQMLGIPGIEHC----ISSNEAFYLD-EPPRRVLTVGGGFISVEFAGIFNAYKPRGGKV 216 (486)
T ss_pred CCcceEEECCEEEEecC--CCCCCCCCCChhhe----echhhhhccc-cCCCeEEEECCCHHHHHHHHHHHHhccCCCeE
Confidence 11134789999999999 89999999997541 1111111111 2468999999999999999887765 8999
Q ss_pred EEecccCCcCccchh--------hhc-cCCCeEEcCceeEEecC--C--cEEEeCCCEEeeceEEEccCcccCCcCCC--
Q 044575 232 HLSAKSLNISEGLSK--------VIS-KHNNLHLHPQIDCLRED--G--RVTFVDGCWVTADTILYCTGYSYSFPFLD-- 296 (454)
Q Consensus 232 ~l~~r~~~~~~~~~~--------~l~-~~~~i~~~~~v~~v~~~--~--~v~~~dG~~i~~D~vI~atG~~~~~~~l~-- 296 (454)
+++++.+++.+.+++ .+. ...+++.+..++++..+ + .+.+.+|+++++|.||+|+|++|+..++.
T Consensus 217 tli~~~~~il~~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~ 296 (486)
T TIGR01423 217 TLCYRNNMILRGFDSTLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLD 296 (486)
T ss_pred EEEecCCccccccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCch
Confidence 999999887554433 232 23578888889988632 2 46677888999999999999999988643
Q ss_pred -------CCCceeeCCCCcccccCcccCCCCCCCceEecccccccc-hhHHHHHHHHHHHHHcCC
Q 044575 297 -------TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIG-FPFFESQAKWIAQLLSGK 353 (454)
Q Consensus 297 -------~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~-~~~a~~qa~~~a~~i~g~ 353 (454)
++|.+.+|+..+ ++.|++|++||+...+. .+.|..||+.++.++.|.
T Consensus 297 ~~gl~~~~~G~I~Vd~~l~----------Ts~~~IyA~GDv~~~~~l~~~A~~qG~~aa~ni~g~ 351 (486)
T TIGR01423 297 KVGVELTKKGAIQVDEFSR----------TNVPNIYAIGDVTDRVMLTPVAINEGAAFVDTVFGN 351 (486)
T ss_pred hhCceECCCCCEecCCCCc----------CCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 345566666544 45799999999986543 489999999999999875
No 21
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=1.5e-32 Score=279.03 Aligned_cols=302 Identities=16% Similarity=0.195 Sum_probs=195.4
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCcc-ccccccceecCCccccccCCCCCCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVH-SSVYASLRLTSPREIMGYTDFPFVLK 89 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (454)
..+||+|||||+||++||..+++.|.+|+|||++ .+||+|.+.+|+|+|.+. .........+... +++...
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~--~Gi~~~----- 118 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNVGCVPKKIMFNAASIHDILENSRH--YGFDTQ----- 118 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccccCCCCCchhhhhcccHHHHHHHHh--cCCCcc-----
Confidence 3689999999999999999999999999999985 799999999999998322 2211111011111 111000
Q ss_pred CCCCCCCCCCHHHHHHH-----------HHHHHHHhCCCccEEeCeE-EEE-----E---EEcCCCccccCCcCCcEEEE
Q 044575 90 KGRDVRRFPGHKELWLY-----------LKDFCQRFGLREMIRFNTR-VEY-----V---GMLDCGELIIGNDLIKWVVK 149 (454)
Q Consensus 90 ~~~~~~~~~~~~~~~~y-----------l~~~~~~~~~~~~i~~~~~-V~~-----v---~~~~~~~~~~~~~~~~~~v~ 149 (454)
. -.....+.+. +.+..++.++. +..+.. ..+ | +..+......+ +. ..+|.
T Consensus 119 ---~---~~d~~~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~-~~-~~~v~ 188 (561)
T PTZ00058 119 ---F---SFNLPLLVERRDKYIRRLNDIYRQNLKKDNVE--YFEGKGSLLSENQVLIKKVSQVDGEADESD-DD-EVTIV 188 (561)
T ss_pred ---C---ccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcE--EEEEEEEEecCCEEEeeccccccccccccc-cc-cceee
Confidence 0 0111222222 22333334443 322221 111 0 00000000000 00 22221
Q ss_pred ------EeecCCCeEEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHH
Q 044575 150 ------SKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISME 223 (454)
Q Consensus 150 ------~~~~~~~~~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~ 223 (454)
..++ .++.||+|||||| +.|..|++||.+. .+.+..+.... .+++|+|||+|.+|+|+|..
T Consensus 189 ~~~~~~~~~g-----~~i~ad~lVIATG--S~P~~P~IpG~~~----v~ts~~~~~l~--~pk~VvIIGgG~iGlE~A~~ 255 (561)
T PTZ00058 189 SAGVSQLDDG-----QVIEGKNILIAVG--NKPIFPDVKGKEF----TISSDDFFKIK--EAKRIGIAGSGYIAVELINV 255 (561)
T ss_pred eccceecCCC-----cEEECCEEEEecC--CCCCCCCCCCcee----EEEHHHHhhcc--CCCEEEEECCcHHHHHHHHH
Confidence 1122 2689999999999 8999999999642 34444433222 26899999999999999999
Q ss_pred HhhhcCeEEEecccCCcCccchh--------hhcc-CCCeEEcCceeEEecCC--c--EEEeCC-CEEeeceEEEccCcc
Q 044575 224 LVEVAKEVHLSAKSLNISEGLSK--------VISK-HNNLHLHPQIDCLREDG--R--VTFVDG-CWVTADTILYCTGYS 289 (454)
Q Consensus 224 l~~~~~~V~l~~r~~~~~~~~~~--------~l~~-~~~i~~~~~v~~v~~~~--~--v~~~dG-~~i~~D~vI~atG~~ 289 (454)
+++.|++|+++++.+++.+.+++ .+.+ .++++.+..+.++.+++ . +.+.++ +++++|.|++|+|++
T Consensus 256 l~~~G~~Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~ 335 (561)
T PTZ00058 256 VNRLGAESYIFARGNRLLRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRS 335 (561)
T ss_pred HHHcCCcEEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCC
Confidence 99999999999998877554432 2222 35788888899887532 2 334454 468999999999999
Q ss_pred cCCcCCC--------CCCceeeCCCCcccccCcccCCCCCCCceEeccccc-----------------------------
Q 044575 290 YSFPFLD--------TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRK----------------------------- 332 (454)
Q Consensus 290 ~~~~~l~--------~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~----------------------------- 332 (454)
|++.+|. ++|.|.+|++++ ++.|++|++||+..
T Consensus 336 Pn~~~L~l~~~~~~~~~G~I~VDe~lq----------Ts~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 405 (561)
T PTZ00058 336 PNTEDLNLKALNIKTPKGYIKVDDNQR----------TSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTS 405 (561)
T ss_pred CCccccCccccceecCCCeEEECcCCc----------cCCCCEEEeEeccCccccccccccccccccccccccccccccc
Confidence 9988764 245566666554 56799999999986
Q ss_pred -----cc-chhHHHHHHHHHHHHHcCC
Q 044575 333 -----LI-GFPFFESQAKWIAQLLSGK 353 (454)
Q Consensus 333 -----~~-~~~~a~~qa~~~a~~i~g~ 353 (454)
.. ..+.|..||+++|.++.|.
T Consensus 406 ~~~~~~~~la~~A~~~g~~aa~ni~g~ 432 (561)
T PTZ00058 406 GESYYNVQLTPVAINAGRLLADRLFGP 432 (561)
T ss_pred cccccCcCchHHHHHHHHHHHHHHhCC
Confidence 22 2368999999999999885
No 22
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=100.00 E-value=1.5e-31 Score=273.00 Aligned_cols=277 Identities=19% Similarity=0.217 Sum_probs=211.7
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK 90 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (454)
..+||+||||||||++||.+|++.|++++||++ .+||.|..... .+ ++
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~--~~GG~~~~~~~----------~~--------------~~------ 257 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE--RFGGQVLDTMG----------IE--------------NF------ 257 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCeeeccCc----------cc--------------cc------
Confidence 368999999999999999999999999999986 48998862110 00 00
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575 91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT 170 (454)
Q Consensus 91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt 170 (454)
....+..+.++.+++.+.++++++. ++++++|.+|+..++ .|.|.+.++. ++.||+||+||
T Consensus 258 --~~~~~~~~~~l~~~l~~~~~~~gv~--i~~~~~V~~I~~~~~----------~~~V~~~~g~-----~i~a~~vViAt 318 (517)
T PRK15317 258 --ISVPETEGPKLAAALEEHVKEYDVD--IMNLQRASKLEPAAG----------LIEVELANGA-----VLKAKTVILAT 318 (517)
T ss_pred --CCCCCCCHHHHHHHHHHHHHHCCCE--EEcCCEEEEEEecCC----------eEEEEECCCC-----EEEcCEEEECC
Confidence 0011345688999999999999987 888999999987542 7888876554 68999999999
Q ss_pred CCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc--cchhhh
Q 044575 171 GHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE--GLSKVI 248 (454)
Q Consensus 171 G~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~--~~~~~l 248 (454)
| +.|+.|++||.+.+.+..+|.....+...+++|+|+|||+|++|+|+|..|+..+++|+++.+.+.+.. .+.+.+
T Consensus 319 G--~~~r~~~ipG~~~~~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~~~~l~~~l 396 (517)
T PRK15317 319 G--ARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKADQVLQDKL 396 (517)
T ss_pred C--CCcCCCCCCCHHHhcCceEEEeeccCchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccccHHHHHHH
Confidence 9 788889999987777777777655555556899999999999999999999999999999999877632 233334
Q ss_pred cc--CCCeEEcCceeEEecCC----cEEEeC---CC--EEeeceEEEccCcccCCcCCC------CCCceeeCCCCcccc
Q 044575 249 SK--HNNLHLHPQIDCLREDG----RVTFVD---GC--WVTADTILYCTGYSYSFPFLD------TKGIVVVDDDRVGPL 311 (454)
Q Consensus 249 ~~--~~~i~~~~~v~~v~~~~----~v~~~d---G~--~i~~D~vI~atG~~~~~~~l~------~~g~i~v~~~~~~~~ 311 (454)
.+ .++++.+..++++.+++ .+.+.+ |+ ++++|.|++|+|++|+++++. ++|.+.+|+..+
T Consensus 397 ~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~v~~~~~g~i~vd~~l~--- 473 (517)
T PRK15317 397 RSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGTVELNRRGEIIVDARGA--- 473 (517)
T ss_pred hcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHhhheeeCCCCcEEECcCCC---
Confidence 32 45788888899987662 255543 43 488999999999999988865 234555554433
Q ss_pred cCcccCCCCCCCceEeccccccc--chhHHHHHHHHHHHHH
Q 044575 312 YEHTFPPSLAPSLSFVGIPRKLI--GFPFFESQAKWIAQLL 350 (454)
Q Consensus 312 ~~~~~~~~~~p~l~~iG~~~~~~--~~~~a~~qa~~~a~~i 350 (454)
++.|++|++||+...+ ....|..++..+|..+
T Consensus 474 -------Ts~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~ 507 (517)
T PRK15317 474 -------TSVPGVFAAGDCTTVPYKQIIIAMGEGAKAALSA 507 (517)
T ss_pred -------CCCCCEEECccccCCCCCEEEEhhhhHHHHHHHH
Confidence 4579999999998643 2457777777777554
No 23
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.9e-31 Score=269.59 Aligned_cols=303 Identities=17% Similarity=0.184 Sum_probs=194.0
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCcc-c-cccccceecCCccccccCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVH-S-SVYASLRLTSPREIMGYTDFPFVLK 89 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (454)
.+||+||||||||++||..|++.|.+|+|||++ .+||+|.+.+|.|++.+. . ..+..+...... +...
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~--~gi~------- 73 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNVGCIPSKALLRNAELAHIFTKEAKT--FGIS------- 73 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecCCccccHHHHhhHHHHHHHHHHHHh--cCCC-------
Confidence 489999999999999999999999999999984 799999999999987222 1 112221111110 0000
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHh--CCCccEEe-CeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEE
Q 044575 90 KGRDVRRFPGHKELWLYLKDFCQRF--GLREMIRF-NTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAV 166 (454)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~--~~~~~i~~-~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~v 166 (454)
.........+....+...++. ++. ..+ ...|..++... .+.+ .. .+.|...++ ...++.||+|
T Consensus 74 ----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~i~g~~---~~~~-~~-~v~v~~~~g---~~~~~~~d~l 139 (466)
T PRK07818 74 ----GEVTFDYGAAFDRSRKVAEGRVKGVH--FLMKKNKITEIHGYG---TFTD-AN-TLEVDLNDG---GTETVTFDNA 139 (466)
T ss_pred ----cCcccCHHHHHHHHHHHHHHHHHHHH--HHHHhCCCEEEEEEE---EEcC-CC-EEEEEecCC---CeeEEEcCEE
Confidence 001123334444433332221 110 001 11333333210 0000 00 334443222 2346899999
Q ss_pred EEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchh
Q 044575 167 VVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSK 246 (454)
Q Consensus 167 ViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~ 246 (454)
||||| +.|..| ||.+. .+.++.+..... ....+++|+|||+|.+|+|+|..+++.+.+|+++++.+++.+.+++
T Consensus 140 ViATG--s~p~~~--pg~~~-~~~v~~~~~~~~-~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~ 213 (466)
T PRK07818 140 IIATG--SSTRLL--PGTSL-SENVVTYEEQIL-SRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDA 213 (466)
T ss_pred EEeCC--CCCCCC--CCCCC-CCcEEchHHHhc-cccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccCH
Confidence 99999 888764 56432 222333322111 1224689999999999999999999999999999998877554332
Q ss_pred --------hhc-cCCCeEEcCceeEEecCC---cEEEe--CCC--EEeeceEEEccCcccCCcCCC---------CCCce
Q 044575 247 --------VIS-KHNNLHLHPQIDCLREDG---RVTFV--DGC--WVTADTILYCTGYSYSFPFLD---------TKGIV 301 (454)
Q Consensus 247 --------~l~-~~~~i~~~~~v~~v~~~~---~v~~~--dG~--~i~~D~vI~atG~~~~~~~l~---------~~g~i 301 (454)
.+. ..++++.++.|+++..++ .+.+. +|+ ++++|.||+|+|++|+.+.+. ++|.+
T Consensus 214 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i 293 (466)
T PRK07818 214 EVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAI 293 (466)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcE
Confidence 222 235788899999997543 24454 674 688999999999999988532 34556
Q ss_pred eeCCCCcccccCcccCCCCCCCceEecccccc-cchhHHHHHHHHHHHHHcCCC
Q 044575 302 VVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKL-IGFPFFESQAKWIAQLLSGKR 354 (454)
Q Consensus 302 ~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~-~~~~~a~~qa~~~a~~i~g~~ 354 (454)
.+|++.+ ++.|++|++||+... ...+.|..||+.+|.++.|..
T Consensus 294 ~vd~~~~----------Ts~p~IyAiGD~~~~~~l~~~A~~~g~~aa~~i~g~~ 337 (466)
T PRK07818 294 AIDDYMR----------TNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIAGAE 337 (466)
T ss_pred eeCCCcc----------cCCCCEEEEeecCCCcccHhHHHHHHHHHHHHHcCCC
Confidence 6665544 457999999999854 345799999999999999864
No 24
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=8.9e-32 Score=278.66 Aligned_cols=302 Identities=19% Similarity=0.221 Sum_probs=196.6
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCcc-ccccccceecCCccccccCCCCCCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVH-SSVYASLRLTSPREIMGYTDFPFVLK 89 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (454)
..+||+||||||||++||..|++.|.+|+|||++ .+||+|.+.+|.|++.+. +..........+ +. +.++.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~-----~~-~g~~~- 168 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESP-----FD-GGIAA- 168 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhccc-----cc-CCccC-
Confidence 3689999999999999999999999999999996 899999999999987321 111111111111 00 01100
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhC-------CCc--cE-EeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEE
Q 044575 90 KGRDVRRFPGHKELWLYLKDFCQRFG-------LRE--MI-RFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVV 159 (454)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~-------~~~--~i-~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 159 (454)
..+ -...+.+.++.++...++. +.. .+ .+..++..++. . .+.|...++ ...
T Consensus 169 ---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~---~---------~~~v~~~~g---~~~ 229 (561)
T PRK13748 169 ---TVP-TIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDD---Q---------TLIVRLNDG---GER 229 (561)
T ss_pred ---CCC-ccCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecC---C---------EEEEEeCCC---ceE
Confidence 001 1234555555444333221 000 01 11223333321 1 566655433 234
Q ss_pred EEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575 160 EEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN 239 (454)
Q Consensus 160 ~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~ 239 (454)
++.||+|||||| +.|.+|++||.+... ..++..... ....+++++|||+|++|+|+|..+++.|++|+++.|...
T Consensus 230 ~~~~d~lviAtG--s~p~~p~i~g~~~~~--~~~~~~~~~-~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~ 304 (561)
T PRK13748 230 VVAFDRCLIATG--ASPAVPPIPGLKETP--YWTSTEALV-SDTIPERLAVIGSSVVALELAQAFARLGSKVTILARSTL 304 (561)
T ss_pred EEEcCEEEEcCC--CCCCCCCCCCCCccc--eEccHHHhh-cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcc
Confidence 689999999999 899999999976521 122221111 123468999999999999999999999999999998543
Q ss_pred c---Cccch----hhhcc-CCCeEEcCceeEEecCC-cEEE-eCCCEEeeceEEEccCcccCCcCCC---------CCCc
Q 044575 240 I---SEGLS----KVISK-HNNLHLHPQIDCLREDG-RVTF-VDGCWVTADTILYCTGYSYSFPFLD---------TKGI 300 (454)
Q Consensus 240 ~---~~~~~----~~l~~-~~~i~~~~~v~~v~~~~-~v~~-~dG~~i~~D~vI~atG~~~~~~~l~---------~~g~ 300 (454)
+ ++.+. +.+.+ .++++.+..++++..++ .+.+ .++.++++|.||+|+|++||..++. ++|.
T Consensus 305 l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~ 384 (561)
T PRK13748 305 FFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHGELRADKLLVATGRAPNTRSLALDAAGVTVNAQGA 384 (561)
T ss_pred ccccCHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCCeEEeCEEEEccCCCcCCCCcCchhcCceECCCCC
Confidence 2 12222 22322 35788888898886432 2322 2344799999999999999987642 3345
Q ss_pred eeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCC
Q 044575 301 VVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKR 354 (454)
Q Consensus 301 i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~ 354 (454)
+.+|++.+ ++.|++|++||+...+ ..+.|..||+.+|.++.|..
T Consensus 385 i~vd~~~~----------Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~ 429 (561)
T PRK13748 385 IVIDQGMR----------TSVPHIYAAGDCTDQPQFVYVAAAAGTRAAINMTGGD 429 (561)
T ss_pred EeECCCcc----------cCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCCC
Confidence 66665544 4679999999998654 34789999999999998753
No 25
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.3e-31 Score=271.07 Aligned_cols=304 Identities=17% Similarity=0.173 Sum_probs=193.8
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCcccc-ccccceecCCccccccCCCCCCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSS-VYASLRLTSPREIMGYTDFPFVLK 89 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 89 (454)
..+||+|||||+||+++|..|++.|.+|+|||+.+.+||+|.+.+|.|++.+... .+.......+ .+ +++.
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~--~~---g~~~--- 86 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNP--FD---GVEA--- 86 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhcc--cc---Cccc---
Confidence 3589999999999999999999999999999998899999999999998732221 1111111111 01 1110
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhC---CCccEEeCeEEEEE----EEcCCCccccCCcCCcEEEEEeecCCCeEEEEE
Q 044575 90 KGRDVRRFPGHKELWLYLKDFCQRFG---LREMIRFNTRVEYV----GMLDCGELIIGNDLIKWVVKSKEKKADKVVEEV 162 (454)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~---~~~~i~~~~~V~~v----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 162 (454)
..+. .....+.........++. ....+..+..|.-+ ...+.. .+.|...++ ...++.
T Consensus 87 ---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~---------~v~v~~~~g---~~~~~~ 150 (479)
T PRK14727 87 ---VAPS-IDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGN---------TLVVRLHDG---GERVLA 150 (479)
T ss_pred ---CCCc-cCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCC---------EEEEEeCCC---ceEEEE
Confidence 0000 122333322222222110 00000111111111 112211 566665443 234689
Q ss_pred eCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc
Q 044575 163 FDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE 242 (454)
Q Consensus 163 ~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~ 242 (454)
||+|||||| +.|..|++||.+... ..++...... ...+++|+|||+|++|+|+|..+++.|++|+++.+. .+.+
T Consensus 151 ~d~lViATG--s~p~~p~i~G~~~~~--~~~~~~~l~~-~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l~ 224 (479)
T PRK14727 151 ADRCLIATG--STPTIPPIPGLMDTP--YWTSTEALFS-DELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLLF 224 (479)
T ss_pred eCEEEEecC--CCCCCCCCCCcCccc--eecchHHhcc-ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCCC
Confidence 999999999 899999999975421 2222111111 123589999999999999999999999999999885 3322
Q ss_pred cch--------hhhcc-CCCeEEcCceeEEecCC-cEEE-eCCCEEeeceEEEccCcccCCcCCC---------CCCcee
Q 044575 243 GLS--------KVISK-HNNLHLHPQIDCLREDG-RVTF-VDGCWVTADTILYCTGYSYSFPFLD---------TKGIVV 302 (454)
Q Consensus 243 ~~~--------~~l~~-~~~i~~~~~v~~v~~~~-~v~~-~dG~~i~~D~vI~atG~~~~~~~l~---------~~g~i~ 302 (454)
.++ +.+.+ .++++.+..++++..++ .+.+ .++.++++|.||+|+|+.|+..+|. ++|.+.
T Consensus 225 ~~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~ 304 (479)
T PRK14727 225 REDPLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHGELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIV 304 (479)
T ss_pred cchHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCCeEEeCEEEEccCCCCCccCCCchhhCceecCCCCEE
Confidence 222 22222 35777888888886332 2322 2344689999999999999988642 345566
Q ss_pred eCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCC
Q 044575 303 VDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKR 354 (454)
Q Consensus 303 v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~ 354 (454)
+|+..+ ++.|++|++||+...+ ..+.|..||+.+|.++.|..
T Consensus 305 Vd~~~~----------Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~~ 347 (479)
T PRK14727 305 VNPAME----------TSAPDIYAAGDCSDLPQFVYVAAAAGSRAGINMTGGN 347 (479)
T ss_pred ECCCee----------cCCCCEEEeeecCCcchhhhHHHHHHHHHHHHHcCCC
Confidence 666544 4579999999998654 35789999999999998863
No 26
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.1e-31 Score=271.63 Aligned_cols=306 Identities=18% Similarity=0.167 Sum_probs=197.8
Q ss_pred ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccc--cccccceecCCccccccCCCCC
Q 044575 9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHS--SVYASLRLTSPREIMGYTDFPF 86 (454)
Q Consensus 9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 86 (454)
|...+||+||||||||++||..|++.|.+|+|||+. .+||+|.+.+|+|++.+.. ..+..++.... +... .
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~---~g~~---~ 73 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASP---FGIS---V 73 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHh---cCcc---C
Confidence 445799999999999999999999999999999985 7999999999999873211 12222221100 0000 0
Q ss_pred CCCCCCCCCCCCCHHHHH-------HHHH----HHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCC
Q 044575 87 VLKKGRDVRRFPGHKELW-------LYLK----DFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKA 155 (454)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~-------~yl~----~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~ 155 (454)
. .......++. +++. ...++.++. +. ..++..++.... +.....++|.+.++
T Consensus 74 ~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~--~~-~g~a~~i~~~~~-----~~~~~~~~v~~~~g-- 136 (472)
T PRK05976 74 S-------GPALDFAKVQERKDGIVDRLTKGVAALLKKGKID--VF-HGIGRILGPSIF-----SPMPGTVSVETETG-- 136 (472)
T ss_pred C-------CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EE-EEEEEEeCCCCC-----cCCceEEEEEeCCC--
Confidence 0 0001222232 2232 223333544 33 345556654300 00000455555433
Q ss_pred CeEEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEec
Q 044575 156 DKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSA 235 (454)
Q Consensus 156 ~~~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~ 235 (454)
...++.||+|||||| +.|+.| ||........+++.+..... ..+++|+|||+|++|+|+|..|++.+.+|++++
T Consensus 137 -~~~~~~~d~lViATG--s~p~~~--p~~~~~~~~~~~~~~~~~~~-~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~ 210 (472)
T PRK05976 137 -ENEMIIPENLLIATG--SRPVEL--PGLPFDGEYVISSDEALSLE-TLPKSLVIVGGGVIGLEWASMLADFGVEVTVVE 210 (472)
T ss_pred -ceEEEEcCEEEEeCC--CCCCCC--CCCCCCCceEEcchHhhCcc-ccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEE
Confidence 124789999999999 788654 33322111233433332222 235899999999999999999999999999999
Q ss_pred ccCCcCccch--------hhhcc-CCCeEEcCceeEEec--CCcE---EEeCCC--EEeeceEEEccCcccCCcCCC---
Q 044575 236 KSLNISEGLS--------KVISK-HNNLHLHPQIDCLRE--DGRV---TFVDGC--WVTADTILYCTGYSYSFPFLD--- 296 (454)
Q Consensus 236 r~~~~~~~~~--------~~l~~-~~~i~~~~~v~~v~~--~~~v---~~~dG~--~i~~D~vI~atG~~~~~~~l~--- 296 (454)
+.+.+.+.+. +.+.+ .++++.++.|+++.. ++.+ .+.+|+ ++++|.||+|+|.+|+.+.+.
T Consensus 211 ~~~~il~~~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~ 290 (472)
T PRK05976 211 AADRILPTEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLEN 290 (472)
T ss_pred ecCccCCcCCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchh
Confidence 9887754432 22333 357888888999863 3322 334674 588999999999999987643
Q ss_pred -----CCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCC
Q 044575 297 -----TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKR 354 (454)
Q Consensus 297 -----~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~ 354 (454)
++|.+.+|+... +..|++|++||+...+ ..+.|..||+.+|.++.|..
T Consensus 291 ~~~~~~~g~i~Vd~~l~----------ts~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~~ 344 (472)
T PRK05976 291 TDIDVEGGFIQIDDFCQ----------TKERHIYAIGDVIGEPQLAHVAMAEGEMAAEHIAGKK 344 (472)
T ss_pred cCceecCCEEEECCCcc----------cCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 234455555443 3469999999998543 45789999999999998864
No 27
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=4.8e-32 Score=274.09 Aligned_cols=298 Identities=20% Similarity=0.222 Sum_probs=197.2
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCC-ccccc-cccceecCCccccccCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTE-VHSSV-YASLRLTSPREIMGYTDFPFVLK 89 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 89 (454)
.+||+||||||||++||+.|++.|.+|+|||+ +.+||+|.+.+|.|++. ++... +...+ + +..+....
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~-~-------~~~~gi~~- 72 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAK-H-------AEEFGIHA- 72 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHH-H-------HHhcCCCc-
Confidence 48999999999999999999999999999999 78999999999998862 11111 11111 0 11111111
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhCCCccE-E--e-CeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCE
Q 044575 90 KGRDVRRFPGHKELWLYLKDFCQRFGLREMI-R--F-NTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDA 165 (454)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i-~--~-~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~ 165 (454)
.....+..++.+++++..+++... + . + ...|.-+.... .+.+ .+++.+ ++. ++.||+
T Consensus 73 ----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~g~~---~~~~----~~~v~v-~~~-----~~~~d~ 133 (460)
T PRK06292 73 ----DGPKIDFKKVMARVRRERDRFVGG--VVEGLEKKPKIDKIKGTA---RFVD----PNTVEV-NGE-----RIEAKN 133 (460)
T ss_pred ----CCCccCHHHHHHHHHHHHHHHhcc--hHHHHHhhCCCEEEEEEE---EEcc----CCEEEE-CcE-----EEEeCE
Confidence 113456778888887777655322 1 0 0 00111111000 0000 234444 222 689999
Q ss_pred EEEccCCCCCCCCCCCCCcCCccce-eEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccc
Q 044575 166 VVVATGHYSYPRLPSIKGMDKWKRK-QMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGL 244 (454)
Q Consensus 166 vViAtG~~~~p~~p~i~G~~~~~~~-~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~ 244 (454)
|||||| +. .|.+||.....+. .+++..... ....+++++|||+|.+|+|+|..+++.|.+|+++++.+.+.+.+
T Consensus 134 lIiATG--s~--~p~ipg~~~~~~~~~~~~~~~~~-~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~ 208 (460)
T PRK06292 134 IVIATG--SR--VPPIPGVWLILGDRLLTSDDAFE-LDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLE 208 (460)
T ss_pred EEEeCC--CC--CCCCCCCcccCCCcEECchHHhC-ccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcch
Confidence 999999 55 4556676432222 222222211 12356899999999999999999999999999999988775433
Q ss_pred hh--------hhccCCCeEEcCceeEEecCC--cEEE--eCC--CEEeeceEEEccCcccCCcCCC---------CCCce
Q 044575 245 SK--------VISKHNNLHLHPQIDCLREDG--RVTF--VDG--CWVTADTILYCTGYSYSFPFLD---------TKGIV 301 (454)
Q Consensus 245 ~~--------~l~~~~~i~~~~~v~~v~~~~--~v~~--~dG--~~i~~D~vI~atG~~~~~~~l~---------~~g~i 301 (454)
++ .+.+..+++.+..|.+++.++ .+++ .+| +++++|.||+|+|++|+.++|. ++|.+
T Consensus 209 d~~~~~~~~~~l~~~I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i 288 (460)
T PRK06292 209 DPEVSKQAQKILSKEFKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRP 288 (460)
T ss_pred hHHHHHHHHHHHhhccEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcE
Confidence 22 232236778888999987543 3543 344 4688999999999999998532 34556
Q ss_pred eeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCC
Q 044575 302 VVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGK 353 (454)
Q Consensus 302 ~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~ 353 (454)
.+|++.+ ++.|++|++||+...+ ..+.|..||+.+|.++.|.
T Consensus 289 ~vd~~~~----------ts~~~IyA~GD~~~~~~~~~~A~~qg~~aa~~i~~~ 331 (460)
T PRK06292 289 VVDEHTQ----------TSVPGIYAAGDVNGKPPLLHEAADEGRIAAENAAGD 331 (460)
T ss_pred eECCCcc----------cCCCCEEEEEecCCCccchhHHHHHHHHHHHHhcCC
Confidence 6665544 4579999999998654 3479999999999999884
No 28
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=3e-32 Score=275.48 Aligned_cols=296 Identities=19% Similarity=0.218 Sum_probs=195.6
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCcc-cc-ccccceecCCccccccCCCCCCCCC
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVH-SS-VYASLRLTSPREIMGYTDFPFVLKK 90 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (454)
+||+||||||||++||..+++.|.+|+|||+.. +||+|.+.+|.|++.+. .. .+..... +. +.........
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~--~~--~g~~~~~~~~-- 73 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARK--PP--FGGLAATVAV-- 73 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhc--cC--cccccCCCcc--
Confidence 689999999999999999999999999999865 99999999999987221 11 1111111 00 1100000000
Q ss_pred CCCCC-CCCCHHHHHHHHH-----HHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeC
Q 044575 91 GRDVR-RFPGHKELWLYLK-----DFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFD 164 (454)
Q Consensus 91 ~~~~~-~~~~~~~~~~yl~-----~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d 164 (454)
+.. .....+++..++. ...+++++. +..+ ++..++ ..+|.+.++ ...+.||
T Consensus 74 --~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~--~~~g-~~~~~~--------------~~~v~v~~g----~~~~~~~ 130 (463)
T TIGR02053 74 --DFGELLEGKREVVEELRHEKYEDVLSSYGVD--YLRG-RARFKD--------------PKTVKVDLG----REVRGAK 130 (463)
T ss_pred --CHHHHHHHHHHHHHHHhhhhHHHHHHhCCcE--EEEE-EEEEcc--------------CCEEEEcCC----eEEEEeC
Confidence 000 0111223333322 333444544 3222 232221 344655432 1257899
Q ss_pred EEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccc
Q 044575 165 AVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGL 244 (454)
Q Consensus 165 ~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~ 244 (454)
+|||||| +.|+.|++||.+... ++++....... ..+++++|||+|.+|+|+|..|++.|.+|+++++.+++.+.+
T Consensus 131 ~lIiATG--s~p~~p~i~G~~~~~--~~~~~~~~~~~-~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~ 205 (463)
T TIGR02053 131 RFLIATG--ARPAIPPIPGLKEAG--YLTSEEALALD-RIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPRE 205 (463)
T ss_pred EEEEcCC--CCCCCCCCCCcccCc--eECchhhhCcc-cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCcc
Confidence 9999999 899999999986542 33333322222 135899999999999999999999999999999988775443
Q ss_pred hh--------hhcc-CCCeEEcCceeEEecCC---cEEEeC---CCEEeeceEEEccCcccCCcCC--C-------CCCc
Q 044575 245 SK--------VISK-HNNLHLHPQIDCLREDG---RVTFVD---GCWVTADTILYCTGYSYSFPFL--D-------TKGI 300 (454)
Q Consensus 245 ~~--------~l~~-~~~i~~~~~v~~v~~~~---~v~~~d---G~~i~~D~vI~atG~~~~~~~l--~-------~~g~ 300 (454)
++ .+.+ .++++.++.|+++..++ .+.+.+ ++++++|.||+|+|++|+.+.| . ++|.
T Consensus 206 d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~ 285 (463)
T TIGR02053 206 EPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGG 285 (463)
T ss_pred CHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCc
Confidence 22 2222 35788888899887543 234432 3578999999999999998833 2 3455
Q ss_pred eeeCCCCcccccCcccCCCCCCCceEecccccccc-hhHHHHHHHHHHHHHcCC
Q 044575 301 VVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIG-FPFFESQAKWIAQLLSGK 353 (454)
Q Consensus 301 i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~-~~~a~~qa~~~a~~i~g~ 353 (454)
+.+|+..+ ++.|++|++||+...+. .+.|..||+.+|.++.+.
T Consensus 286 i~vd~~~~----------Ts~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~ 329 (463)
T TIGR02053 286 ILVDETLR----------TSNPGIYAAGDVTGGLQLEYVAAKEGVVAAENALGG 329 (463)
T ss_pred EeECCCcc----------CCCCCEEEeeecCCCcccHhHHHHHHHHHHHHhcCC
Confidence 66665444 45799999999987543 479999999999999886
No 29
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=5.3e-32 Score=272.01 Aligned_cols=288 Identities=16% Similarity=0.206 Sum_probs=196.9
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC-CCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH-DVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK 90 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~-~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (454)
.+||+||||||||++||..|++.|.+|+|||+.+ .+||+|.+.+|.|++.+.... .. ...+.
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~----~~----------~~~~~--- 65 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDA----QQ----------HTDFV--- 65 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHh----cc----------CCCHH---
Confidence 4899999999999999999999999999999976 489999999998876211100 00 00000
Q ss_pred CCCCCCCCCHHHHHHHHHH-----HHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCE
Q 044575 91 GRDVRRFPGHKELWLYLKD-----FCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDA 165 (454)
Q Consensus 91 ~~~~~~~~~~~~~~~yl~~-----~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~ 165 (454)
......+++.++++. ..+..++. +. ..++..++.. .+.|...++ ..++.||+
T Consensus 66 ----~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~-~g~~~~i~~~------------~~~v~~~~g----~~~~~~d~ 122 (441)
T PRK08010 66 ----RAIQRKNEVVNFLRNKNFHNLADMPNID--VI-DGQAEFINNH------------SLRVHRPEG----NLEIHGEK 122 (441)
T ss_pred ----HHHHHHHHHHHHHHHhHHHHHhhcCCcE--EE-EEEEEEecCC------------EEEEEeCCC----eEEEEeCE
Confidence 000111233344432 11111332 22 2344444321 556655432 12589999
Q ss_pred EEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccch
Q 044575 166 VVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLS 245 (454)
Q Consensus 166 vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~ 245 (454)
|||||| +.|..|++||++...+ ++++......+ ..+++|+|||+|.+|+|+|..+++.+.+|+++++.+.+.+.+.
T Consensus 123 lviATG--s~p~~p~i~G~~~~~~-v~~~~~~~~~~-~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~ 198 (441)
T PRK08010 123 IFINTG--AQTVVPPIPGITTTPG-VYDSTGLLNLK-ELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPRED 198 (441)
T ss_pred EEEcCC--CcCCCCCCCCccCCCC-EEChhHhhccc-ccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCcC
Confidence 999999 8999999999865443 33333332222 2457999999999999999999999999999999887755433
Q ss_pred h--------hhcc-CCCeEEcCceeEEecCC-cEEEe-CCCEEeeceEEEccCcccCCcCCC---------CCCceeeCC
Q 044575 246 K--------VISK-HNNLHLHPQIDCLREDG-RVTFV-DGCWVTADTILYCTGYSYSFPFLD---------TKGIVVVDD 305 (454)
Q Consensus 246 ~--------~l~~-~~~i~~~~~v~~v~~~~-~v~~~-dG~~i~~D~vI~atG~~~~~~~l~---------~~g~i~v~~ 305 (454)
+ .+.+ .++++.+..|+++..++ .+.+. ++.++++|.|++|+|.+|+.+++. ++|.+.+|+
T Consensus 199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~ 278 (441)
T PRK08010 199 RDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHAQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDK 278 (441)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCCeEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECC
Confidence 2 2333 35788888899987543 34332 334688999999999999987532 345566666
Q ss_pred CCcccccCcccCCCCCCCceEecccccccc-hhHHHHHHHHHHHHHcCC
Q 044575 306 DRVGPLYEHTFPPSLAPSLSFVGIPRKLIG-FPFFESQAKWIAQLLSGK 353 (454)
Q Consensus 306 ~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~-~~~a~~qa~~~a~~i~g~ 353 (454)
+.+ ++.|++|++||+...+. .+.|..|++.++.++.|+
T Consensus 279 ~~~----------Ts~~~IyA~GD~~~~~~~~~~a~~~~~~~~~~~~g~ 317 (441)
T PRK08010 279 YLH----------TTADNIWAMGDVTGGLQFTYISLDDYRIVRDELLGE 317 (441)
T ss_pred Ccc----------cCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCC
Confidence 544 45799999999997643 478999999999999885
No 30
>PLN02546 glutathione reductase
Probab=100.00 E-value=1.2e-32 Score=280.09 Aligned_cols=291 Identities=20% Similarity=0.244 Sum_probs=194.3
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEee---------CCCCCcccccCCCCCCCCccc-c-ccccceecCCccccc
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQ---------NHDVGGQWLYDPNTDQTEVHS-S-VYASLRLTSPREIMG 80 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~---------~~~~GG~w~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~ 80 (454)
++||+||||||||+.||..+++.|.+|+|||+ ...+||+|.+.+|+|+|.+.. . .+..++. ..
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~-~~----- 152 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEE-SR----- 152 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHh-hh-----
Confidence 58999999999999999999999999999996 256999999999999983221 1 1111111 00
Q ss_pred cCCCCCCCCCCCCCCCCCCHHHHH-----------HHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEE
Q 044575 81 YTDFPFVLKKGRDVRRFPGHKELW-----------LYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVK 149 (454)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~ 149 (454)
.+.+.. ....-.....+. .++....++.++. +. ..+++.++. .+|.
T Consensus 153 --~~g~~~----~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~--~i-~G~a~~vd~--------------~~V~ 209 (558)
T PLN02546 153 --GFGWKY----ETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVT--LI-EGRGKIVDP--------------HTVD 209 (558)
T ss_pred --hcCccc----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcE--EE-EeEEEEccC--------------CEEE
Confidence 000000 000001222222 3333333333443 22 223333332 2344
Q ss_pred EeecCCCeEEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcC
Q 044575 150 SKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAK 229 (454)
Q Consensus 150 ~~~~~~~~~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~ 229 (454)
+ ++. ++.||+|||||| +.|..|++||.+. .+++...... ...+++|+|||+|.+|+|+|..+++.+.
T Consensus 210 v-~G~-----~~~~D~LVIATG--s~p~~P~IpG~~~----v~~~~~~l~~-~~~~k~V~VIGgG~iGvE~A~~L~~~g~ 276 (558)
T PLN02546 210 V-DGK-----LYTARNILIAVG--GRPFIPDIPGIEH----AIDSDAALDL-PSKPEKIAIVGGGYIALEFAGIFNGLKS 276 (558)
T ss_pred E-CCE-----EEECCEEEEeCC--CCCCCCCCCChhh----ccCHHHHHhc-cccCCeEEEECCCHHHHHHHHHHHhcCC
Confidence 4 222 689999999999 9999999999753 2222221111 1246899999999999999999999999
Q ss_pred eEEEecccCCcCccchhh--------hc-cCCCeEEcCceeEEec--CCcEE--EeCCCEEeeceEEEccCcccCCcCCC
Q 044575 230 EVHLSAKSLNISEGLSKV--------IS-KHNNLHLHPQIDCLRE--DGRVT--FVDGCWVTADTILYCTGYSYSFPFLD 296 (454)
Q Consensus 230 ~V~l~~r~~~~~~~~~~~--------l~-~~~~i~~~~~v~~v~~--~~~v~--~~dG~~i~~D~vI~atG~~~~~~~l~ 296 (454)
+|+++.+.+.+.+.+++. +. ..++++.+..+.++.. ++.+. +.+++.+.+|.||+|+|++|+..+|.
T Consensus 277 ~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~ 356 (558)
T PLN02546 277 DVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLG 356 (558)
T ss_pred eEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCCcCC
Confidence 999999988765544332 22 2357888888888863 33333 33444445899999999999988632
Q ss_pred ---------CCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCC
Q 044575 297 ---------TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKR 354 (454)
Q Consensus 297 ---------~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~ 354 (454)
++|.|.+|++.+ ++.|+||++||+.... ..+.|..||+.+|.++.|..
T Consensus 357 le~~gl~~d~~G~I~VD~~l~----------Ts~p~IYAaGDv~~~~~l~~~A~~~g~~~a~~i~g~~ 414 (558)
T PLN02546 357 LEEVGVKMDKNGAIEVDEYSR----------TSVPSIWAVGDVTDRINLTPVALMEGGALAKTLFGNE 414 (558)
T ss_pred hhhcCCcCCCCCcEeECCCce----------eCCCCEEEeeccCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 345666766554 4579999999998654 45899999999999999853
No 31
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=2.7e-31 Score=272.71 Aligned_cols=277 Identities=18% Similarity=0.264 Sum_probs=204.4
Q ss_pred cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCC
Q 044575 10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLK 89 (454)
Q Consensus 10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (454)
...+||+||||||||++||..|++.|++|+|||++ .+||.+...... .++|
T Consensus 2 ~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~~~~i------------------------~~~p---- 52 (555)
T TIGR03143 2 EEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITITSEV------------------------VNYP---- 52 (555)
T ss_pred CCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEecccc------------------------ccCC----
Confidence 34589999999999999999999999999999995 688887632110 0011
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEc
Q 044575 90 KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA 169 (454)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViA 169 (454)
.....+..++.+++.+.++++++. + .+++|.+++..+. .+.|.+.++ .+.+|+||||
T Consensus 53 ----g~~~~~~~~l~~~l~~~~~~~gv~--~-~~~~V~~i~~~~~----------~~~V~~~~g------~~~a~~lVlA 109 (555)
T TIGR03143 53 ----GILNTTGPELMQEMRQQAQDFGVK--F-LQAEVLDVDFDGD----------IKTIKTARG------DYKTLAVLIA 109 (555)
T ss_pred ----CCcCCCHHHHHHHHHHHHHHcCCE--E-eccEEEEEEecCC----------EEEEEecCC------EEEEeEEEEC
Confidence 011234578889999999998876 4 4778988886432 466766432 5789999999
Q ss_pred cCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcC--ccchhh
Q 044575 170 TGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNIS--EGLSKV 247 (454)
Q Consensus 170 tG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~--~~~~~~ 247 (454)
|| +.|+.|++||.+.+.+..++.+.......+.+++|+|||+|.+|+|+|..|++.+++|+++.|.+.+. ..+.+.
T Consensus 110 TG--a~p~~~~ipG~~~~~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~~~~~~~~ 187 (555)
T TIGR03143 110 TG--ASPRKLGFPGEEEFTGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTCAKLIAEK 187 (555)
T ss_pred CC--CccCCCCCCCHHHhCCceEEEEeecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCccccCHHHHHH
Confidence 99 88999999998766666666665555556688999999999999999999999999999999988652 222222
Q ss_pred h-c-cCCCeEEcCceeEEecCCcE---EE---eCCCEE----eece----EEEccCcccCCcCCC------CCCceeeCC
Q 044575 248 I-S-KHNNLHLHPQIDCLREDGRV---TF---VDGCWV----TADT----ILYCTGYSYSFPFLD------TKGIVVVDD 305 (454)
Q Consensus 248 l-~-~~~~i~~~~~v~~v~~~~~v---~~---~dG~~i----~~D~----vI~atG~~~~~~~l~------~~g~i~v~~ 305 (454)
+ . ..++++.+..|+++..++.+ .+ .+|+.. ++|. ||+|+|++|+..++. ++|.+.+|+
T Consensus 188 ~~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~~l~l~~~G~I~vd~ 267 (555)
T TIGR03143 188 VKNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKGVVELDKRGYIPTNE 267 (555)
T ss_pred HHhCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhhhcccCCCCeEEeCC
Confidence 2 2 24578889999999765432 22 357653 2666 999999999988754 345566665
Q ss_pred CCcccccCcccCCCCCCCceEecccccc--cchhHHHHHHHHHHHHH
Q 044575 306 DRVGPLYEHTFPPSLAPSLSFVGIPRKL--IGFPFFESQAKWIAQLL 350 (454)
Q Consensus 306 ~~~~~~~~~~~~~~~~p~l~~iG~~~~~--~~~~~a~~qa~~~a~~i 350 (454)
+.. ++.|++|++||+... .....|..||+.+|.++
T Consensus 268 ~~~----------Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i 304 (555)
T TIGR03143 268 DME----------TNVPGVYAAGDLRPKELRQVVTAVADGAIAATSA 304 (555)
T ss_pred ccc----------cCCCCEEEceeccCCCcchheeHHhhHHHHHHHH
Confidence 544 457999999998632 23457888888888665
No 32
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=2.4e-31 Score=271.12 Aligned_cols=279 Identities=18% Similarity=0.220 Sum_probs=208.3
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK 90 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (454)
..+||+||||||||++||.+|++.|++|+||+. .+||.+..... +. .+..
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~~~----------~~-----------~~~~------- 260 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDTVG----------IE-----------NLIS------- 260 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccCcC----------cc-----------cccc-------
Confidence 468999999999999999999999999999985 58988753210 00 0000
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575 91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT 170 (454)
Q Consensus 91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt 170 (454)
..+....++.+++.+.++++++. ++++++|.+|+..++ .|.+++.++. .+.||+||+||
T Consensus 261 ----~~~~~~~~l~~~l~~~l~~~gv~--i~~~~~V~~I~~~~~----------~~~v~~~~g~-----~i~~d~lIlAt 319 (515)
T TIGR03140 261 ----VPYTTGSQLAANLEEHIKQYPID--LMENQRAKKIETEDG----------LIVVTLESGE-----VLKAKSVIVAT 319 (515)
T ss_pred ----cCCCCHHHHHHHHHHHHHHhCCe--EEcCCEEEEEEecCC----------eEEEEECCCC-----EEEeCEEEECC
Confidence 11134578889999999888887 888999999986532 6778776554 68999999999
Q ss_pred CCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc--cchhhh
Q 044575 171 GHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE--GLSKVI 248 (454)
Q Consensus 171 G~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~--~~~~~l 248 (454)
| +.|+.|++||...+.+...+.........+.+++|+|||+|++|+|+|..|+..+++|+++.+.+.+.. .+.+.+
T Consensus 320 G--a~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~~~~l~~~l 397 (515)
T TIGR03140 320 G--ARWRKLGVPGEKEYIGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKADKVLQDKL 397 (515)
T ss_pred C--CCcCCCCCCCHHHcCCCeEEEeeccChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCChhHHHHHHH
Confidence 9 778889999976555555555444444445789999999999999999999999999999998877632 123334
Q ss_pred cc--CCCeEEcCceeEEecCC----cEEEeCC-----CEEeeceEEEccCcccCCcCCC------CCCceeeCCCCcccc
Q 044575 249 SK--HNNLHLHPQIDCLREDG----RVTFVDG-----CWVTADTILYCTGYSYSFPFLD------TKGIVVVDDDRVGPL 311 (454)
Q Consensus 249 ~~--~~~i~~~~~v~~v~~~~----~v~~~dG-----~~i~~D~vI~atG~~~~~~~l~------~~g~i~v~~~~~~~~ 311 (454)
.+ .++++.+..++++.+++ .|++.++ +++++|.||+|+|++|+++++. ++|.+.+|++.+
T Consensus 398 ~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~~~~~~~G~I~vd~~~~--- 474 (515)
T TIGR03140 398 KSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDAVELNRRGEIVIDERGR--- 474 (515)
T ss_pred hcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhhcccCCCCeEEECCCCC---
Confidence 32 46788888999987552 3666543 3588999999999999988764 335566665544
Q ss_pred cCcccCCCCCCCceEeccccccc--chhHHHHHHHHHHHHHcC
Q 044575 312 YEHTFPPSLAPSLSFVGIPRKLI--GFPFFESQAKWIAQLLSG 352 (454)
Q Consensus 312 ~~~~~~~~~~p~l~~iG~~~~~~--~~~~a~~qa~~~a~~i~g 352 (454)
++.|++|++||+...+ ....|..||..+|..+..
T Consensus 475 -------Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~~ 510 (515)
T TIGR03140 475 -------TSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFD 510 (515)
T ss_pred -------CCCCCEEEcccccCCccceEEEEEccHHHHHHHHHH
Confidence 4579999999998643 346788888888776543
No 33
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=6.6e-31 Score=263.87 Aligned_cols=282 Identities=17% Similarity=0.202 Sum_probs=192.6
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC-CCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD-VGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK 90 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~-~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (454)
.+||+||||||||++||..|++.|.+|+|||+++. +||+|.+.+|.|++.+...... .
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~--------------~------- 61 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEK--------------N------- 61 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhc--------------C-------
Confidence 48999999999999999999999999999999864 7999999999887621110000 0
Q ss_pred CCCCCCCCCHHHHHHHHH-----------HHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEE
Q 044575 91 GRDVRRFPGHKELWLYLK-----------DFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVV 159 (454)
Q Consensus 91 ~~~~~~~~~~~~~~~yl~-----------~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 159 (454)
....++.++.+ +...+.++. +..+ ++..++ ..+|.+..++ ...
T Consensus 62 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~--~~~g-~~~~~~--------------~~~v~v~~~~--~~~ 115 (438)
T PRK07251 62 -------LSFEQVMATKNTVTSRLRGKNYAMLAGSGVD--LYDA-EAHFVS--------------NKVIEVQAGD--EKI 115 (438)
T ss_pred -------CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EEEEcc--------------CCEEEEeeCC--CcE
Confidence 01122222222 222333333 2222 222211 2345554321 123
Q ss_pred EEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575 160 EEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN 239 (454)
Q Consensus 160 ~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~ 239 (454)
++.||+|||||| +.|+.|++||.+... .++++....... ..+++|+|||+|.+|+|+|..+++.+.+|+++++.+.
T Consensus 116 ~~~~d~vViATG--s~~~~p~i~G~~~~~-~v~~~~~~~~~~-~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 191 (438)
T PRK07251 116 ELTAETIVINTG--AVSNVLPIPGLADSK-HVYDSTGIQSLE-TLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAST 191 (438)
T ss_pred EEEcCEEEEeCC--CCCCCCCCCCcCCCC-cEEchHHHhcch-hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 689999999999 889999999975432 233333322221 2468999999999999999999999999999999887
Q ss_pred cCccchh--------hhcc-CCCeEEcCceeEEecCC-cE-EEeCCCEEeeceEEEccCcccCCcCCC---------CCC
Q 044575 240 ISEGLSK--------VISK-HNNLHLHPQIDCLREDG-RV-TFVDGCWVTADTILYCTGYSYSFPFLD---------TKG 299 (454)
Q Consensus 240 ~~~~~~~--------~l~~-~~~i~~~~~v~~v~~~~-~v-~~~dG~~i~~D~vI~atG~~~~~~~l~---------~~g 299 (454)
+.+...+ .+.+ ..+++.+..|+++..++ .+ ...+|+++++|.||+|+|++|+.+.+. ++|
T Consensus 192 ~l~~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g 271 (438)
T PRK07251 192 ILPREEPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTEPLGLENTDIELTERG 271 (438)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCC
Confidence 7543322 1222 35777888899887543 23 345678899999999999999987643 234
Q ss_pred ceeeCCCCcccccCcccCCCCCCCceEecccccccc-hhHHHHHHHHHHHHHcCCC
Q 044575 300 IVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIG-FPFFESQAKWIAQLLSGKR 354 (454)
Q Consensus 300 ~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~-~~~a~~qa~~~a~~i~g~~ 354 (454)
.+.+|+..+ ++.|++|++||+...+. .+.+..|++.++.++.|..
T Consensus 272 ~i~vd~~~~----------t~~~~IyaiGD~~~~~~~~~~a~~~~~~~~~~~~~~~ 317 (438)
T PRK07251 272 AIKVDDYCQ----------TSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTGDG 317 (438)
T ss_pred cEEECCCcc----------cCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCCC
Confidence 555555443 45799999999986543 4788899999999988753
No 34
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=4.1e-31 Score=266.59 Aligned_cols=304 Identities=19% Similarity=0.190 Sum_probs=189.9
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCc-ccc-cccccee-cCCccccccCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEV-HSS-VYASLRL-TSPREIMGYTDFPFVL 88 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~-~~~-~~~~~~~-~~~~~~~~~~~~~~~~ 88 (454)
.+||+||||||||++||..+++.|.+|+|||+++.+||+|.+.+|+|+|.+ ... .|..++. .... +...
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~--~gi~------ 74 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAH--LGIE------ 74 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhh--cCcc------
Confidence 489999999999999999999999999999987889999999999999822 111 1221111 0000 0000
Q ss_pred CCCCCCCCCCCHHHHHHHHHHH-----------HHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCe
Q 044575 89 KKGRDVRRFPGHKELWLYLKDF-----------CQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADK 157 (454)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~-----------~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 157 (454)
...-....++.+..... .++.++. +..+ +. ++ .+.. +..|...++ .
T Consensus 75 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~g-~a-~~--~~~~---------~v~v~~~~g---~ 131 (466)
T PRK06115 75 -----VKPTLNLAQMMKQKDESVEALTKGVEFLFRKNKVD--WIKG-WG-RL--DGVG---------KVVVKAEDG---S 131 (466)
T ss_pred -----ccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEEE-EE-EE--ccCC---------EEEEEcCCC---c
Confidence 00001122222222222 2222222 1111 11 11 1111 444443332 2
Q ss_pred EEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEeccc
Q 044575 158 VVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKS 237 (454)
Q Consensus 158 ~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~ 237 (454)
..++.||+|||||| ++|. .+||.+......+++...... ...+++|+|||+|.+|+|+|..+++.|++|+++++.
T Consensus 132 ~~~~~~d~lVIATG--s~p~--~ipg~~~~~~~~~~~~~~~~~-~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~ 206 (466)
T PRK06115 132 ETQLEAKDIVIATG--SEPT--PLPGVTIDNQRIIDSTGALSL-PEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYL 206 (466)
T ss_pred eEEEEeCEEEEeCC--CCCC--CCCCCCCCCCeEECHHHHhCC-ccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCC
Confidence 34689999999999 7774 356754222223433332221 124689999999999999999999999999999998
Q ss_pred CCcCccchhh--------hc-cCCCeEEcCceeEEecC--C-cEEEe---CC--CEEeeceEEEccCcccCCcCCC-CCC
Q 044575 238 LNISEGLSKV--------IS-KHNNLHLHPQIDCLRED--G-RVTFV---DG--CWVTADTILYCTGYSYSFPFLD-TKG 299 (454)
Q Consensus 238 ~~~~~~~~~~--------l~-~~~~i~~~~~v~~v~~~--~-~v~~~---dG--~~i~~D~vI~atG~~~~~~~l~-~~g 299 (454)
+++.+.++.. +. ..++++.+..|+++..+ + .+.+. +| +++++|.||+|+|++|+...|. +..
T Consensus 207 ~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~ 286 (466)
T PRK06115 207 DRICPGTDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETV 286 (466)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccc
Confidence 8875544322 22 23578888899998743 2 23333 23 4688999999999999988653 111
Q ss_pred ceeeCCCCcccccCcccCCCCCCCceEecccccccc-hhHHHHHHHHHHHHHcCCC
Q 044575 300 IVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIG-FPFFESQAKWIAQLLSGKR 354 (454)
Q Consensus 300 ~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~-~~~a~~qa~~~a~~i~g~~ 354 (454)
.+.+++.... ...+ . .++.|++|++||+...+. .+.|..||+++|.++.|..
T Consensus 287 g~~~~~~G~~-vd~~-~-~Ts~~~IyA~GD~~~~~~la~~A~~~g~~aa~~i~~~~ 339 (466)
T PRK06115 287 GLETDKRGML-ANDH-H-RTSVPGVWVIGDVTSGPMLAHKAEDEAVACIERIAGKA 339 (466)
T ss_pred cceeCCCCEE-ECCC-e-ecCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 2233322110 0011 1 156799999999986543 4899999999999998864
No 35
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=9.2e-32 Score=271.42 Aligned_cols=295 Identities=21% Similarity=0.232 Sum_probs=190.5
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeC-----C---CCCcccccCCCCCCCCccccc--cccceecCCcccccc
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQN-----H---DVGGQWLYDPNTDQTEVHSSV--YASLRLTSPREIMGY 81 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~-----~---~~GG~w~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 81 (454)
.+||+||||||||+.+|..+++.|.+|++||+. . .+||+|.+.+|+|+|.+.... +...+ +.. .+++
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~-~~~--~~g~ 78 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALK-DSR--NYGW 78 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHh-hhh--hcCc
Confidence 479999999999999999999999999999973 1 599999999999998322211 11111 000 0111
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-----------CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEE
Q 044575 82 TDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRF-----------GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKS 150 (454)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-----------~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~ 150 (454)
. +. ...-.....+.++.++..+++ ++. .+..+..-++ ..+|.+
T Consensus 79 ~---~~------~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~---~i~G~a~f~~--------------~~~v~v 132 (484)
T TIGR01438 79 N---VE------ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVN---YENAYAEFVD--------------KHRIKA 132 (484)
T ss_pred c---cC------CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcE---EEEEEEEEcC--------------CCEEEE
Confidence 0 00 000123344444444333332 222 1111111111 123444
Q ss_pred eecCCCeEEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCe
Q 044575 151 KEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKE 230 (454)
Q Consensus 151 ~~~~~~~~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~ 230 (454)
.+.+ +...++.||+|||||| +.|+.|++||.+.. .+.+....... ...++++|||+|++|+|+|..+++.|.+
T Consensus 133 ~~~~-g~~~~~~~d~lVIATG--s~p~~p~ipG~~~~---~~~~~~~~~~~-~~~~~vvIIGgG~iG~E~A~~l~~~G~~ 205 (484)
T TIGR01438 133 TNKK-GKEKIYSAERFLIATG--ERPRYPGIPGAKEL---CITSDDLFSLP-YCPGKTLVVGASYVALECAGFLAGIGLD 205 (484)
T ss_pred eccC-CCceEEEeCEEEEecC--CCCCCCCCCCccce---eecHHHhhccc-ccCCCEEEECCCHHHHHHHHHHHHhCCc
Confidence 3221 2233689999999999 89999999997542 12222222111 1347899999999999999999999999
Q ss_pred EEEecccCCcCccchh--------hhcc-CCCeEEcCceeEEecC-C--cEEEeCCC---EEeeceEEEccCcccCCcCC
Q 044575 231 VHLSAKSLNISEGLSK--------VISK-HNNLHLHPQIDCLRED-G--RVTFVDGC---WVTADTILYCTGYSYSFPFL 295 (454)
Q Consensus 231 V~l~~r~~~~~~~~~~--------~l~~-~~~i~~~~~v~~v~~~-~--~v~~~dG~---~i~~D~vI~atG~~~~~~~l 295 (454)
|+++.|. .+.+.+++ .+.+ .++++.+..+.++... + .|++.+|+ ++++|.||+|+|++||+.+|
T Consensus 206 Vtli~~~-~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l 284 (484)
T TIGR01438 206 VTVMVRS-ILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRKL 284 (484)
T ss_pred EEEEEec-ccccccCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCCcC
Confidence 9999984 44333322 2322 3477888877777632 2 35666663 78999999999999999875
Q ss_pred C--C--------CCceeeCCCCcccccCcccCCCCCCCceEeccccc-c-cchhHHHHHHHHHHHHHcCC
Q 044575 296 D--T--------KGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRK-L-IGFPFFESQAKWIAQLLSGK 353 (454)
Q Consensus 296 ~--~--------~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~-~-~~~~~a~~qa~~~a~~i~g~ 353 (454)
. . .|.+.+|+..+ ++.|++|++||+.. . ...+.|..||+.+|+++.|.
T Consensus 285 ~l~~~gv~~~~~~G~I~Vd~~~~----------Ts~p~IyA~GDv~~~~~~l~~~A~~~g~~aa~~i~~~ 344 (484)
T TIGR01438 285 NLENVGVKINKKTGKIPADEEEQ----------TNVPYIYAVGDILEDKQELTPVAIQAGRLLAQRLFSG 344 (484)
T ss_pred CcccccceecCcCCeEecCCCcc----------cCCCCEEEEEEecCCCccchHHHHHHHHHHHHHHhcC
Confidence 3 1 24455554433 45799999999874 2 34578999999999999874
No 36
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=8.6e-32 Score=272.89 Aligned_cols=314 Identities=18% Similarity=0.181 Sum_probs=202.2
Q ss_pred cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC--------CCCcccccCCCCCCCCcccc--ccccceecCCcccc
Q 044575 10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH--------DVGGQWLYDPNTDQTEVHSS--VYASLRLTSPREIM 79 (454)
Q Consensus 10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~--------~~GG~w~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 79 (454)
+..+||+||||||||++||..+++.|.+|+|||+.. .+||+|.+.+|.|+|.+... .+...+.... .+
T Consensus 3 ~~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~--~~ 80 (499)
T PTZ00052 3 TFMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQ--MY 80 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHh--cC
Confidence 335899999999999999999999999999999631 49999999999998722111 1111110000 01
Q ss_pred ccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEE
Q 044575 80 GYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVV 159 (454)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 159 (454)
.+. ...-....++.++++...++++.. +....++..|+.......+.+ .++|.+.+.+ ...
T Consensus 81 g~~-----------~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~v~~i~g~a~~~~----~~~v~v~~~~--~~~ 141 (499)
T PTZ00052 81 GWK-----------TSSSFNWGKLVTTVQNHIRSLNFS--YRTGLRSSKVEYINGLAKLKD----EHTVSYGDNS--QEE 141 (499)
T ss_pred CCC-----------CCCCcCHHHHHHHHHHHHHHhhHH--HHHHhhhcCcEEEEEEEEEcc----CCEEEEeeCC--Cce
Confidence 110 000135577888888877766433 222222222222211110100 3456554321 223
Q ss_pred EEEeCEEEEccCCCCCCCCCC-CCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575 160 EEVFDAVVVATGHYSYPRLPS-IKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL 238 (454)
Q Consensus 160 ~~~~d~vViAtG~~~~p~~p~-i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~ 238 (454)
.+.||+|||||| +.|..|. +||.+.. .+.+....... ..+++++|||+|.+|+|+|..|++.|.+||++.+.
T Consensus 142 ~i~~d~lIIATG--s~p~~p~~i~G~~~~---~~~~~~~~~~~-~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~- 214 (499)
T PTZ00052 142 TITAKYILIATG--GRPSIPEDVPGAKEY---SITSDDIFSLS-KDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS- 214 (499)
T ss_pred EEECCEEEEecC--CCCCCCCCCCCccce---eecHHHHhhhh-cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-
Confidence 689999999999 8999884 8887542 12222221111 13479999999999999999999999999999875
Q ss_pred CcCccch--------hhhcc-CCCeEEcCceeEEecC-C--cEEEeCCCEEeeceEEEccCcccCCcCCC-CCCceeeCC
Q 044575 239 NISEGLS--------KVISK-HNNLHLHPQIDCLRED-G--RVTFVDGCWVTADTILYCTGYSYSFPFLD-TKGIVVVDD 305 (454)
Q Consensus 239 ~~~~~~~--------~~l~~-~~~i~~~~~v~~v~~~-~--~v~~~dG~~i~~D~vI~atG~~~~~~~l~-~~g~i~v~~ 305 (454)
.+.+.++ +.+.+ .++++.+..+.++... + .+.+.+|+++++|.||+|+|++||.++|. +...+.+++
T Consensus 215 ~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~ 294 (499)
T PTZ00052 215 IPLRGFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNK 294 (499)
T ss_pred cccccCCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECC
Confidence 3333332 22322 3577778777777532 2 46677899999999999999999998864 222344444
Q ss_pred CCcccccCcccCCCCCCCceEeccccc-c-cchhHHHHHHHHHHHHHcCCC
Q 044575 306 DRVGPLYEHTFPPSLAPSLSFVGIPRK-L-IGFPFFESQAKWIAQLLSGKR 354 (454)
Q Consensus 306 ~~~~~~~~~~~~~~~~p~l~~iG~~~~-~-~~~~~a~~qa~~~a~~i~g~~ 354 (454)
......... .++.|++|++||+.. . ...+.|..||+.+|.+|.|..
T Consensus 295 ~G~ii~~~~---~Ts~p~IyAiGDv~~~~~~l~~~A~~~g~~aa~ni~g~~ 342 (499)
T PTZ00052 295 SNKIIAPND---CTNIPNIFAVGDVVEGRPELTPVAIKAGILLARRLFKQS 342 (499)
T ss_pred CCCEeeCCC---cCCCCCEEEEEEecCCCcccHHHHHHHHHHHHHHHhCCC
Confidence 322111111 256799999999874 2 345899999999999998753
No 37
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=1.7e-31 Score=267.50 Aligned_cols=280 Identities=18% Similarity=0.250 Sum_probs=189.8
Q ss_pred CcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575 13 KNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK 90 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (454)
++|||||||+||++||+.|++. +.+|+|||+++.++ |.+|. .|+-.
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~----~~~~~--------------------------lp~~~-- 49 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS----FANCA--------------------------LPYYI-- 49 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc----cccCC--------------------------cchhh--
Confidence 3799999999999999999887 57999999987653 11110 00000
Q ss_pred CCCCCCCCCHHHHHHH-HHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEc
Q 044575 91 GRDVRRFPGHKELWLY-LKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA 169 (454)
Q Consensus 91 ~~~~~~~~~~~~~~~y-l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViA 169 (454)
.......++...+ ...+.++.++. ++++++|++|+.. ..+|.+.++.++...++.||+||||
T Consensus 50 ---~~~~~~~~~~~~~~~~~~~~~~~i~--v~~~~~V~~Id~~------------~~~v~~~~~~~~~~~~~~yd~lviA 112 (438)
T PRK13512 50 ---GEVVEDRKYALAYTPEKFYDRKQIT--VKTYHEVIAINDE------------RQTVTVLNRKTNEQFEESYDKLILS 112 (438)
T ss_pred ---cCccCCHHHcccCCHHHHHHhCCCE--EEeCCEEEEEECC------------CCEEEEEECCCCcEEeeecCEEEEC
Confidence 0001111222222 13444556776 7888999999876 3346665543233446789999999
Q ss_pred cCCCCCCCCCCCCCcCCccceeEEee-cCCC-CCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccch--
Q 044575 170 TGHYSYPRLPSIKGMDKWKRKQMHSH-IYRV-PEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLS-- 245 (454)
Q Consensus 170 tG~~~~p~~p~i~G~~~~~~~~~~~~-~~~~-~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~-- 245 (454)
|| +.|+.|++++...+....+... ..+. .....+++++|||+|.+|+|+|..|++.|.+|+++++.+.+.+.+.
T Consensus 113 tG--s~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~ 190 (438)
T PRK13512 113 PG--ASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDAD 190 (438)
T ss_pred CC--CCCCCCCCCCCCeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchhcCHH
Confidence 99 8888886543211111000000 0000 0122468999999999999999999999999999999887654332
Q ss_pred ------hhhcc-CCCeEEcCceeEEecCCcEEEeCCCEEeeceEEEccCcccCCcCCC-------CCCceeeCCCCcccc
Q 044575 246 ------KVISK-HNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPFLD-------TKGIVVVDDDRVGPL 311 (454)
Q Consensus 246 ------~~l~~-~~~i~~~~~v~~v~~~~~v~~~dG~~i~~D~vI~atG~~~~~~~l~-------~~g~i~v~~~~~~~~ 311 (454)
+.+.+ .++++.+..|+++++. .|++++|+++++|.|++|+|++|+.+++. ++|.+.+|++.+
T Consensus 191 ~~~~l~~~l~~~gI~i~~~~~v~~i~~~-~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~--- 266 (438)
T PRK13512 191 MNQPILDELDKREIPYRLNEEIDAINGN-EVTFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFE--- 266 (438)
T ss_pred HHHHHHHHHHhcCCEEEECCeEEEEeCC-EEEECCCCEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCCcc---
Confidence 22332 3478888999999754 58888999999999999999999988754 334555555443
Q ss_pred cCcccCCCCCCCceEecccccc-----------cchhHHHHHHHHHHHHHcCCC
Q 044575 312 YEHTFPPSLAPSLSFVGIPRKL-----------IGFPFFESQAKWIAQLLSGKR 354 (454)
Q Consensus 312 ~~~~~~~~~~p~l~~iG~~~~~-----------~~~~~a~~qa~~~a~~i~g~~ 354 (454)
++.|++|++||+... ...+.|..||+.+|+++.|..
T Consensus 267 -------t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~~ 313 (438)
T PRK13512 267 -------TNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAGND 313 (438)
T ss_pred -------cCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcCCC
Confidence 356999999999742 223468899999999999853
No 38
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-30 Score=244.48 Aligned_cols=260 Identities=24% Similarity=0.302 Sum_probs=203.3
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCc-EEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHR-VVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLK 89 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~-v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (454)
+.+||+|||||||||+||.++.+.+.+ ++|+|+ ...||...... ..-.|++++
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~-~~~gg~~~~~~---------------------~venypg~~---- 55 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEG-GEPGGQLTKTT---------------------DVENYPGFP---- 55 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEec-CCcCCccccce---------------------eecCCCCCc----
Confidence 358999999999999999999999998 555555 55664433211 111222222
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEc
Q 044575 90 KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA 169 (454)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViA 169 (454)
.-.+..++.+-+.+.+..++.. +.. ..|.+++...+ .|+|++.++ ++++++||||
T Consensus 56 ------~~~~g~~L~~~~~~~a~~~~~~--~~~-~~v~~v~~~~~----------~F~v~t~~~------~~~ak~vIiA 110 (305)
T COG0492 56 ------GGILGPELMEQMKEQAEKFGVE--IVE-DEVEKVELEGG----------PFKVKTDKG------TYEAKAVIIA 110 (305)
T ss_pred ------cCCchHHHHHHHHHHHhhcCeE--EEE-EEEEEEeecCc----------eEEEEECCC------eEEEeEEEEC
Confidence 2235688889999999988877 433 67777776532 477777654 4899999999
Q ss_pred cCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc--cchhh
Q 044575 170 TGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE--GLSKV 247 (454)
Q Consensus 170 tG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~--~~~~~ 247 (454)
|| ..++.|.+||..+|.++.+|.+..++. .+++|+|+|||||.||+|-|..|++.+++||+++|++.+.. .+.+.
T Consensus 111 tG--~~~~~~~~~~e~e~~g~gv~yc~~cdg-~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra~~~~~~~ 187 (305)
T COG0492 111 TG--AGARKLGVPGEEEFEGKGVSYCATCDG-FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRAEEILVER 187 (305)
T ss_pred cC--CcccCCCCCcchhhcCCceEEeeecCc-cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCcCHHHHHH
Confidence 99 889999888877899999999999998 89999999999999999999999999999999999998844 34444
Q ss_pred hccC--CCeEEcCceeEEecCC--cEEEeCC--C--EEeeceEEEccCcccCCcCCC------CCCceeeCCCCcccccC
Q 044575 248 ISKH--NNLHLHPQIDCLREDG--RVTFVDG--C--WVTADTILYCTGYSYSFPFLD------TKGIVVVDDDRVGPLYE 313 (454)
Q Consensus 248 l~~~--~~i~~~~~v~~v~~~~--~v~~~dG--~--~i~~D~vI~atG~~~~~~~l~------~~g~i~v~~~~~~~~~~ 313 (454)
+.+. +.++.+..|.++.+++ .|.+.+. + ++++|-++.++|+.|+..|+. +.|.+.+|+...
T Consensus 188 l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~~~~~g~I~v~~~~~----- 262 (305)
T COG0492 188 LKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVDEEME----- 262 (305)
T ss_pred HHhcCCeEEEeCCceeEEecCccceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccccCCCCcEEcCCCcc-----
Confidence 5443 5778889999998753 5778774 3 567999999999999988764 467777777654
Q ss_pred cccCCCCCCCceEeccccccc
Q 044575 314 HTFPPSLAPSLSFVGIPRKLI 334 (454)
Q Consensus 314 ~~~~~~~~p~l~~iG~~~~~~ 334 (454)
++.|++|++||+....
T Consensus 263 -----TsvpGifAaGDv~~~~ 278 (305)
T COG0492 263 -----TSVPGIFAAGDVADKN 278 (305)
T ss_pred -----cCCCCEEEeEeeccCc
Confidence 6789999999998543
No 39
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.98 E-value=5.7e-31 Score=266.40 Aligned_cols=301 Identities=19% Similarity=0.245 Sum_probs=195.2
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEee------CCCCCcccccCCCCCCCCc-ccc-ccccceecCCccccccC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQ------NHDVGGQWLYDPNTDQTEV-HSS-VYASLRLTSPREIMGYT 82 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~------~~~~GG~w~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~ 82 (454)
..+||+||||||||++||.++++.|.+|+|||+ ...+||+|.+.+|.|++.+ ... .+..+............
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~ 82 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVD 82 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCC
Confidence 458999999999999999999999999999998 4679999999999987621 111 11111110000000000
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHH-----------HHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEe
Q 044575 83 DFPFVLKKGRDVRRFPGHKELWLY-----------LKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSK 151 (454)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~y-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~ 151 (454)
..+ ....++.+. +..+.+..++. + ...++..++...+ .++|.+.
T Consensus 83 ~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~-~~g~~~~~~~~~~----------~~~v~v~ 137 (475)
T PRK06327 83 GVK------------IDVAKMIARKDKVVKKMTGGIEGLFKKNKIT--V-LKGRGSFVGKTDA----------GYEIKVT 137 (475)
T ss_pred CCc------------cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--E-EEEEEEEecCCCC----------CCEEEEe
Confidence 000 112222222 22223333443 2 2345555554322 5677775
Q ss_pred ecCCCeEEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeE
Q 044575 152 EKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEV 231 (454)
Q Consensus 152 ~~~~~~~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V 231 (454)
..+ ..+++||+|||||| +.|+.| |+.. +.+..++...........+++|+|||+|.+|+|+|..+++.+.+|
T Consensus 138 ~~~---~~~~~~d~lViATG--s~p~~~--p~~~-~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~V 209 (475)
T PRK06327 138 GED---ETVITAKHVIIATG--SEPRHL--PGVP-FDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEV 209 (475)
T ss_pred cCC---CeEEEeCEEEEeCC--CCCCCC--CCCC-CCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeE
Confidence 321 12689999999999 788654 3322 222223322211111224689999999999999999999999999
Q ss_pred EEecccCCcCccchh--------hhcc-CCCeEEcCceeEEecCC---cEEEeCC----CEEeeceEEEccCcccCCcCC
Q 044575 232 HLSAKSLNISEGLSK--------VISK-HNNLHLHPQIDCLREDG---RVTFVDG----CWVTADTILYCTGYSYSFPFL 295 (454)
Q Consensus 232 ~l~~r~~~~~~~~~~--------~l~~-~~~i~~~~~v~~v~~~~---~v~~~dG----~~i~~D~vI~atG~~~~~~~l 295 (454)
+++++.+.+.+.+++ .+.+ ..+++.++.|+++..++ .+.+.++ +++++|.|++|+|++|+.+++
T Consensus 210 tli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l 289 (475)
T PRK06327 210 TILEALPAFLAAADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGL 289 (475)
T ss_pred EEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCCC
Confidence 999998877443322 2222 35788888999987542 3455553 468899999999999998854
Q ss_pred C---------CCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCC
Q 044575 296 D---------TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKR 354 (454)
Q Consensus 296 ~---------~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~ 354 (454)
. ++|.+.+|+... ++.|++|++||+...+ ..+.|..|++.+|.++.|..
T Consensus 290 ~~~~~g~~~~~~G~i~vd~~~~----------Ts~~~VyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~~ 348 (475)
T PRK06327 290 GLEAVGLKLDERGFIPVDDHCR----------TNVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIAGQK 348 (475)
T ss_pred CcHhhCceeCCCCeEeECCCCc----------cCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHcCCC
Confidence 2 334555555443 4569999999998543 45789999999999998864
No 40
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.98 E-value=9.2e-31 Score=264.93 Aligned_cols=294 Identities=17% Similarity=0.208 Sum_probs=193.8
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCcc--ccccccceecCCccccccCCCCCCCCC
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVH--SSVYASLRLTSPREIMGYTDFPFVLKK 90 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (454)
+||+||||||||++||..|++.|.+|+|||+ +.+||+|.+.+|.|++.+. ...+..++ +.. .+.+..
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~-~~~-------~~g~~~-- 70 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIK-HAK-------DYGIEV-- 70 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHH-HHH-------hcCCCC--
Confidence 7999999999999999999999999999999 8899999999999986211 11222222 111 011000
Q ss_pred CCCCCCCCCHHHHHHHHHHH-----------HHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEE
Q 044575 91 GRDVRRFPGHKELWLYLKDF-----------CQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVV 159 (454)
Q Consensus 91 ~~~~~~~~~~~~~~~yl~~~-----------~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 159 (454)
. ....+...+.++.+.. .++.++. +.. .++..++ .. .+.+...++ ..
T Consensus 71 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~-g~~~~~~---~~---------~~~v~~~~g----~~ 128 (461)
T TIGR01350 71 --E-NVSVDWEKMQKRKNKVVKKLVGGVKGLLKKNKVT--VIK-GEAKFLD---PG---------TVLVTGENG----EE 128 (461)
T ss_pred --C-CCcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCE--EEE-EEEEEcc---CC---------EEEEecCCC----cE
Confidence 0 0112334444333332 2333433 222 2233222 11 455554322 13
Q ss_pred EEEeCEEEEccCCCCCCCCCCCC-CcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575 160 EEVFDAVVVATGHYSYPRLPSIK-GMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL 238 (454)
Q Consensus 160 ~~~~d~vViAtG~~~~p~~p~i~-G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~ 238 (454)
++.||+|||||| +.|+.|++| +. .+..+++..........+++|+|||+|.+|+|+|..+++.+.+|+++.+.+
T Consensus 129 ~~~~d~lVlAtG--~~p~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~ 203 (461)
T TIGR01350 129 TLTAKNIIIATG--SRPRSLPGPFDF---DGEVVITSTGALNLKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD 203 (461)
T ss_pred EEEeCEEEEcCC--CCCCCCCCCCCC---CCceEEcchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 689999999999 889888776 32 222222222111112245899999999999999999999999999999988
Q ss_pred CcCccchhh--------hcc-CCCeEEcCceeEEecC-Cc--EEEeCC--CEEeeceEEEccCcccCCc--CCC------
Q 044575 239 NISEGLSKV--------ISK-HNNLHLHPQIDCLRED-GR--VTFVDG--CWVTADTILYCTGYSYSFP--FLD------ 296 (454)
Q Consensus 239 ~~~~~~~~~--------l~~-~~~i~~~~~v~~v~~~-~~--v~~~dG--~~i~~D~vI~atG~~~~~~--~l~------ 296 (454)
.+.+.+... +.+ ..+++.+..|+++..+ +. +.+.+| +++++|.||+|+|+.|+.+ ++.
T Consensus 204 ~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~ 283 (461)
T TIGR01350 204 RILPGEDAEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVEL 283 (461)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceE
Confidence 775443322 222 3578888899988643 23 344567 4789999999999999988 332
Q ss_pred -CCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCC
Q 044575 297 -TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKR 354 (454)
Q Consensus 297 -~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~ 354 (454)
+.|.+.+|++.+ ++.|++|++||+...+ ..+.|..||+.+|.++.++.
T Consensus 284 ~~~g~i~vd~~l~----------t~~~~IyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (461)
T TIGR01350 284 DERGRIVVDEYMR----------TNVPGIYAIGDVIGGPMLAHVASHEGIVAAENIAGKE 333 (461)
T ss_pred CCCCcEeeCCCcc----------cCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 335566665444 3469999999998643 45789999999999998864
No 41
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.98 E-value=1.1e-30 Score=263.52 Aligned_cols=302 Identities=19% Similarity=0.215 Sum_probs=197.5
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCc-ccc-ccccceecCCccccccCCCCCCCCC
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEV-HSS-VYASLRLTSPREIMGYTDFPFVLKK 90 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (454)
++|+|||||++|+.+|..+++.|.+|++||++ .+||+|.+.+|+|+|.+ ... .+...+. ... ++. ....
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~~~gciPsK~l~~~a~~~~~~~~-~~~--~g~---~~~~-- 72 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAVLTDCVPSKTLIATAEVRTELRR-AAE--LGI---RFID-- 72 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCcccccCCcchHHHHHHHHHHHHHHH-HHh--CCc---cccc--
Confidence 58999999999999999999999999999986 59999999999998722 111 1111111 000 000 0000
Q ss_pred CCCCCCCCCHHHHHHHH-----------HHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEE
Q 044575 91 GRDVRRFPGHKELWLYL-----------KDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVV 159 (454)
Q Consensus 91 ~~~~~~~~~~~~~~~yl-----------~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 159 (454)
..........+.+++ .+.++++++. +. ..++..++...+. . ...|...++ ...
T Consensus 73 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~--~~-~g~~~~~~~~~~~-------~-~v~V~~~~g---~~~ 136 (466)
T PRK07845 73 --DGEARVDLPAVNARVKALAAAQSADIRARLEREGVR--VI-AGRGRLIDPGLGP-------H-RVKVTTADG---GEE 136 (466)
T ss_pred --CcccccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCE--EE-EEEEEEeecccCC-------C-EEEEEeCCC---ceE
Confidence 000011223333333 3333444544 33 3344443311111 0 455544332 223
Q ss_pred EEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575 160 EEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN 239 (454)
Q Consensus 160 ~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~ 239 (454)
++.||+|||||| +.|..|+.++... ..++++....... ..+++++|||+|.+|+|+|..|++.+.+|+++++.+.
T Consensus 137 ~~~~d~lViATG--s~p~~~p~~~~~~--~~v~~~~~~~~~~-~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~ 211 (466)
T PRK07845 137 TLDADVVLIATG--ASPRILPTAEPDG--ERILTWRQLYDLD-ELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDR 211 (466)
T ss_pred EEecCEEEEcCC--CCCCCCCCCCCCC--ceEEeehhhhccc-ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence 689999999999 8888765444321 2234443332222 2358999999999999999999999999999999887
Q ss_pred cCccchh--------hhcc-CCCeEEcCceeEEecC-C--cEEEeCCCEEeeceEEEccCcccCCcCC--C-------CC
Q 044575 240 ISEGLSK--------VISK-HNNLHLHPQIDCLRED-G--RVTFVDGCWVTADTILYCTGYSYSFPFL--D-------TK 298 (454)
Q Consensus 240 ~~~~~~~--------~l~~-~~~i~~~~~v~~v~~~-~--~v~~~dG~~i~~D~vI~atG~~~~~~~l--~-------~~ 298 (454)
+.+.+.. .+.+ .++++.+..++++..+ + .+.+.+|+++++|.||+|+|++|+.+.+ . ++
T Consensus 212 ~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~ 291 (466)
T PRK07845 212 VLPGEDADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPS 291 (466)
T ss_pred CCCCCCHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCC
Confidence 7554332 2333 3577888888888532 2 3566789999999999999999998753 2 33
Q ss_pred CceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCC
Q 044575 299 GIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKR 354 (454)
Q Consensus 299 g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~ 354 (454)
|.+.+|++.+ ++.|++|++||+...+ ..+.|..||+.++.++.|..
T Consensus 292 G~i~Vd~~~~----------Ts~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~ 338 (466)
T PRK07845 292 GHITVDRVSR----------TSVPGIYAAGDCTGVLPLASVAAMQGRIAMYHALGEA 338 (466)
T ss_pred CcEeECCCcc----------cCCCCEEEEeeccCCccchhHHHHHHHHHHHHHcCCC
Confidence 4555555443 4579999999998654 45899999999999998864
No 42
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.98 E-value=2.2e-31 Score=267.26 Aligned_cols=290 Identities=18% Similarity=0.197 Sum_probs=190.7
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCcccc--ccccceecCCccccccCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSS--VYASLRLTSPREIMGYTDFPFVLK 89 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 89 (454)
++||+|||+||+|..||.. ..|.+|++||+ +.+||+|.+.+|+|+|.+... .+...+. ... +... .
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~-~~~--~g~~-----~- 69 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCLNVGCIPTKMFVYAAEVAQSIGE-SAR--LGID-----A- 69 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeeeccCccchHHHHHHHHHHHHHHH-hhc--cCee-----C-
Confidence 5899999999999998654 46999999998 579999999999999832211 1111111 110 0000 0
Q ss_pred CCCCCCCCCCHHHHHHHHHH-HHHHh--------------CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecC
Q 044575 90 KGRDVRRFPGHKELWLYLKD-FCQRF--------------GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKK 154 (454)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~-~~~~~--------------~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~ 154 (454)
. ..-....++.++... ..+.. ++. +..++.+.. + .++|.+.++.
T Consensus 70 ---~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~--~~~g~~~~~----~-----------~~~V~~~~g~ 128 (452)
T TIGR03452 70 ---E-IDSVRWPDIVSRVFGDRIDPIAAGGEDYRRGDETPNID--VYDGHARFV----G-----------PRTLRTGDGE 128 (452)
T ss_pred ---C-CCccCHHHHHHHhhhhHhHHHhccchHhhhhcccCCeE--EEEEEEEEe----c-----------CCEEEECCCc
Confidence 0 001234555555433 22211 111 111111111 1 5567775443
Q ss_pred CCeEEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEe
Q 044575 155 ADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLS 234 (454)
Q Consensus 155 ~~~~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~ 234 (454)
++.||+|||||| +.|..|++++... .....+.+..... ..+++++|||+|++|+|+|..+++.|.+|+++
T Consensus 129 -----~~~~d~lIiATG--s~p~~p~~~~~~~--~~~~~~~~~~~l~-~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli 198 (452)
T TIGR03452 129 -----EITGDQIVIAAG--SRPYIPPAIADSG--VRYHTNEDIMRLP-ELPESLVIVGGGYIAAEFAHVFSALGTRVTIV 198 (452)
T ss_pred -----EEEeCEEEEEEC--CCCCCCCCCCCCC--CEEEcHHHHHhhh-hcCCcEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence 689999999999 8998886433211 1122222211111 13689999999999999999999999999999
Q ss_pred cccCCcCccchh--------hhccCCCeEEcCceeEEecCC---cEEEeCCCEEeeceEEEccCcccCCcCCC-------
Q 044575 235 AKSLNISEGLSK--------VISKHNNLHLHPQIDCLREDG---RVTFVDGCWVTADTILYCTGYSYSFPFLD------- 296 (454)
Q Consensus 235 ~r~~~~~~~~~~--------~l~~~~~i~~~~~v~~v~~~~---~v~~~dG~~i~~D~vI~atG~~~~~~~l~------- 296 (454)
++.+.+.+.+++ .+....+++++..|+++..++ .+.+.+|+++++|.||+|+|++|+.+++.
T Consensus 199 ~~~~~ll~~~d~~~~~~l~~~~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~ 278 (452)
T TIGR03452 199 NRSTKLLRHLDEDISDRFTEIAKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVE 278 (452)
T ss_pred EccCccccccCHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCee
Confidence 998876433322 223345678888899887432 35566888999999999999999998753
Q ss_pred --CCCceeeCCCCcccccCcccCCCCCCCceEecccccccc-hhHHHHHHHHHHHHHcCCC
Q 044575 297 --TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIG-FPFFESQAKWIAQLLSGKR 354 (454)
Q Consensus 297 --~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~-~~~a~~qa~~~a~~i~g~~ 354 (454)
++|.+.+|++.+ ++.|++|++||+...+. .+.|..||+.+|.++.|..
T Consensus 279 ~~~~G~i~vd~~~~----------Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~~ 329 (452)
T TIGR03452 279 VDEDGRIKVDEYGR----------TSARGVWALGDVSSPYQLKHVANAEARVVKHNLLHPN 329 (452)
T ss_pred ECCCCcEeeCCCcc----------cCCCCEEEeecccCcccChhHHHHHHHHHHHHhcCCC
Confidence 234555555443 56799999999987644 4789999999999998753
No 43
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.98 E-value=3e-31 Score=239.94 Aligned_cols=306 Identities=21% Similarity=0.261 Sum_probs=213.9
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCC-ccccccccceecCCccccccCCCCCCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTE-VHSSVYASLRLTSPREIMGYTDFPFVLK 89 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (454)
..+|.+|||||.+|+++|+..+..|.++.++|..-.+||+|.+.+|.|.+. +..+.|.. .+-.-.+|.|+.
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~-------~~~da~~yG~~~- 90 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSE-------EMEDAKDYGFPI- 90 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhH-------HhhhhhhcCCcc-
Confidence 369999999999999999999999999999999779999999999999872 22222211 111122344443
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEE
Q 044575 90 KGRDVRRFPGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVV 168 (454)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVi 168 (454)
....-..+..+.+--..|..++ ++.+...-+..|.-|+-. +.+.+.. .-.|...++. ...+++++++|
T Consensus 91 ---~~~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~---a~f~~~~--~v~V~~~d~~---~~~Ytak~iLI 159 (478)
T KOG0405|consen 91 ---NEEGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGR---ARFVSPG--EVEVEVNDGT---KIVYTAKHILI 159 (478)
T ss_pred ---ccccCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeee---EEEcCCC--ceEEEecCCe---eEEEecceEEE
Confidence 1111123344444444444433 222222234444444321 1111111 4455555442 44689999999
Q ss_pred ccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchhhh
Q 044575 169 ATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVI 248 (454)
Q Consensus 169 AtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~l 248 (454)
||| ++|.+|+|||.+. .+.|..+.+.+++ .||++|||+|++|+|+|..++.+|.+++++.|.+..+..|++.+
T Consensus 160 AtG--g~p~~PnIpG~E~----gidSDgff~Lee~-Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~FD~~i 232 (478)
T KOG0405|consen 160 ATG--GRPIIPNIPGAEL----GIDSDGFFDLEEQ-PKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMI 232 (478)
T ss_pred EeC--CccCCCCCCchhh----ccccccccchhhc-CceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcchhHHH
Confidence 999 9999999999865 4455555544444 48999999999999999999999999999999999888777766
Q ss_pred ccC---------CCeEEcCceeEEecC--C--cEEEeCCCEEeeceEEEccCcccCCcCCC---------CCCceeeCCC
Q 044575 249 SKH---------NNLHLHPQIDCLRED--G--RVTFVDGCWVTADTILYCTGYSYSFPFLD---------TKGIVVVDDD 306 (454)
Q Consensus 249 ~~~---------~~i~~~~~v~~v~~~--~--~v~~~dG~~i~~D~vI~atG~~~~~~~l~---------~~g~i~v~~~ 306 (454)
+.. .+++..+.++++... + .+..+.|+...+|.++||+|+.|++.-|+ +.|.|.+|++
T Consensus 233 ~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeY 312 (478)
T KOG0405|consen 233 SDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEY 312 (478)
T ss_pred HHHHHHHhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEecc
Confidence 532 367788888877532 2 34455665555999999999999987654 4566777776
Q ss_pred CcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcC
Q 044575 307 RVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSG 352 (454)
Q Consensus 307 ~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g 352 (454)
.. ++.|+++++||...-. ..|+|.+.+|-+|.-+.|
T Consensus 313 q~----------Tnvp~I~avGDv~gk~~LTPVAiaagr~la~rlF~ 349 (478)
T KOG0405|consen 313 QN----------TNVPSIWAVGDVTGKINLTPVAIAAGRKLANRLFG 349 (478)
T ss_pred cc----------CCCCceEEeccccCcEecchHHHhhhhhHHHHhhc
Confidence 65 6789999999998644 458999999999987766
No 44
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.98 E-value=3.8e-32 Score=244.69 Aligned_cols=194 Identities=42% Similarity=0.620 Sum_probs=137.1
Q ss_pred EEECcChHHHHHHHHHHHcCCc-EEEEeeCCCCCcccccCCCCCCCCccccccccceecCCcc---ccccCCCCC---CC
Q 044575 16 CVIGAGPSGLVAARELRKEGHR-VVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPRE---IMGYTDFPF---VL 88 (454)
Q Consensus 16 vIIGaG~aGl~aA~~l~~~g~~-v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~~ 88 (454)
+||||||+||++|.+|++.|.+ ++|||+++.+||.|....... ....|.. .+.+++++. ..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 68 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYT------------RLHSPSFFSSDFGLPDFESFSFDD 68 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTT------------T-BSSSCCTGGSS--CCCHSCHHH
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCC------------ccccCccccccccCCccccccccc
Confidence 7999999999999999999998 999999999999998532111 1111111 111111111 10
Q ss_pred C-CCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEE
Q 044575 89 K-KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVV 167 (454)
Q Consensus 89 ~-~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vV 167 (454)
. .......+++++++.+|++++++++++. ++++++|++|++.++ .|+|++.++. ++.+|+||
T Consensus 69 ~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~--i~~~~~V~~v~~~~~----------~w~v~~~~~~-----~~~a~~VV 131 (203)
T PF13738_consen 69 SPEWRWPHDFPSGEEVLDYLQEYAERFGLE--IRFNTRVESVRRDGD----------GWTVTTRDGR-----TIRADRVV 131 (203)
T ss_dssp HHHHHHSBSSEBHHHHHHHHHHHHHHTTGG--EETS--EEEEEEETT----------TEEEEETTS------EEEEEEEE
T ss_pred CCCCCCCcccCCHHHHHHHHHHHHhhcCcc--cccCCEEEEEEEecc----------EEEEEEEecc-----eeeeeeEE
Confidence 0 0002356789999999999999999998 999999999998854 7999998763 78899999
Q ss_pred EccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575 168 VATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI 240 (454)
Q Consensus 168 iAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~ 240 (454)
+|||.++.|++|.+|| ..+. ..+|+..+..+..+++|+|+|||+|.||+|+|..|++.+++|+++.|++.+
T Consensus 132 lAtG~~~~p~~p~~~g-~~~~-~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~~ 202 (203)
T PF13738_consen 132 LATGHYSHPRIPDIPG-SAFR-PIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPIW 202 (203)
T ss_dssp E---SSCSB---S-TT-GGCS-EEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS---
T ss_pred EeeeccCCCCcccccc-cccc-ceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCCC
Confidence 9999888999999999 2222 788999999999999999999999999999999999999999999998754
No 45
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.97 E-value=1.1e-30 Score=268.78 Aligned_cols=323 Identities=19% Similarity=0.159 Sum_probs=201.9
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeC-CCCCcccccCCCCCCCCc-cc-cccccceecCCccccccC--CCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQN-HDVGGQWLYDPNTDQTEV-HS-SVYASLRLTSPREIMGYT--DFPF 86 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~-~~~GG~w~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~--~~~~ 86 (454)
+|||+|||||+||++||..+++.|.+|+|||+. ..+||+|.+.+|+|+|.+ .. ..+..++...-...++.. .||.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~~ 195 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFKN 195 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccccc
Confidence 689999999999999999999999999999974 469999999999999821 11 122222211000011111 1110
Q ss_pred CCCCC------CCCCCCCCHHHHHHHHHHHHHHhCCC--cc-----EEeCeEEEEEEEcCCCccccCCcCCcEEEEEeec
Q 044575 87 VLKKG------RDVRRFPGHKELWLYLKDFCQRFGLR--EM-----IRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEK 153 (454)
Q Consensus 87 ~~~~~------~~~~~~~~~~~~~~yl~~~~~~~~~~--~~-----i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~ 153 (454)
..... .....-.....+.++.+...+++.-. .. +..+.++..+.... +.+.+ ..+|++...
T Consensus 196 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~--a~f~~----~~~v~v~~~ 269 (659)
T PTZ00153 196 GKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYER--GHIVD----KNTIKSEKS 269 (659)
T ss_pred cccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeE--EEEec----CCeEEEccC
Confidence 00000 00011135566777766666553210 00 11112222332211 11111 223444311
Q ss_pred CCCeEEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEE
Q 044575 154 KADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHL 233 (454)
Q Consensus 154 ~~~~~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l 233 (454)
+ .++.||+|||||| +.|.+|++++.+.. .++.+.+....+ ..+++|+|||+|.+|+|+|..+++.|++||+
T Consensus 270 --g--~~i~ad~lIIATG--S~P~~P~~~~~~~~--~V~ts~d~~~l~-~lpk~VvIVGgG~iGvE~A~~l~~~G~eVTL 340 (659)
T PTZ00153 270 --G--KEFKVKNIIIATG--STPNIPDNIEVDQK--SVFTSDTAVKLE-GLQNYMGIVGMGIIGLEFMDIYTALGSEVVS 340 (659)
T ss_pred --C--EEEECCEEEEcCC--CCCCCCCCCCCCCC--cEEehHHhhhhh-hcCCceEEECCCHHHHHHHHHHHhCCCeEEE
Confidence 1 2689999999999 89998876654331 233333322111 2368999999999999999999999999999
Q ss_pred ecccCCcCccchhh---------hc-cCCCeEEcCceeEEecCC---cEE--EeC-------C--------CEEeeceEE
Q 044575 234 SAKSLNISEGLSKV---------IS-KHNNLHLHPQIDCLREDG---RVT--FVD-------G--------CWVTADTIL 283 (454)
Q Consensus 234 ~~r~~~~~~~~~~~---------l~-~~~~i~~~~~v~~v~~~~---~v~--~~d-------G--------~~i~~D~vI 283 (454)
+++.+++.+.++.. +. ..++++.+..|+++..++ .+. +.+ + +++++|.||
T Consensus 341 Ie~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~Vl 420 (659)
T PTZ00153 341 FEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCL 420 (659)
T ss_pred EeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEE
Confidence 99998875544332 22 335788888899887532 133 221 1 268899999
Q ss_pred EccCcccCCcCCC--------CCCceeeCCCCcccccCcccCCCCCCCceEecccccccc-hhHHHHHHHHHHHHHcCC
Q 044575 284 YCTGYSYSFPFLD--------TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIG-FPFFESQAKWIAQLLSGK 353 (454)
Q Consensus 284 ~atG~~~~~~~l~--------~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~-~~~a~~qa~~~a~~i~g~ 353 (454)
+|||++|+++.|. ++|.|.||++++.. .. ..+..|++|++||+...+. .+.|..||+.++++|.|.
T Consensus 421 vAtGr~Pnt~~L~l~~~gi~~~~G~I~VDe~lqTs-~~---~~~~v~~IYAiGDv~g~~~La~~A~~qg~~aa~ni~g~ 495 (659)
T PTZ00153 421 VATGRKPNTNNLGLDKLKIQMKRGFVSVDEHLRVL-RE---DQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEGK 495 (659)
T ss_pred EEECcccCCccCCchhcCCcccCCEEeECCCCCcC-CC---CCCCCCCEEEEEecCCCccCHHHHHHHHHHHHHHHcCC
Confidence 9999999998753 23667777765521 00 0012589999999986543 489999999999999986
No 46
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.97 E-value=5.9e-30 Score=257.90 Aligned_cols=278 Identities=17% Similarity=0.250 Sum_probs=190.7
Q ss_pred cEEEECcChHHHHHHHHHHHcC--CcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 14 NVCVIGAGPSGLVAARELRKEG--HRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 14 ~VvIIGaG~aGl~aA~~l~~~g--~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
+|||||||+||+++|..|++.+ .+|+|||+++.++ +.++. .|+.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~----~~~~~--------------------------~~~~---- 47 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS----FGACG--------------------------LPYF---- 47 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce----eecCC--------------------------CceE----
Confidence 6999999999999999999875 5999999987642 11110 0000
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG 171 (454)
....+....++..+..+..++.++. +.++++|++|+..+ ..|.+.+..++....+.||+||||||
T Consensus 48 -~~~~~~~~~~~~~~~~~~~~~~gv~--~~~~~~V~~id~~~------------~~v~~~~~~~~~~~~~~yd~lviAtG 112 (444)
T PRK09564 48 -VGGFFDDPNTMIARTPEEFIKSGID--VKTEHEVVKVDAKN------------KTITVKNLKTGSIFNDTYDKLMIATG 112 (444)
T ss_pred -eccccCCHHHhhcCCHHHHHHCCCe--EEecCEEEEEECCC------------CEEEEEECCCCCEEEecCCEEEECCC
Confidence 0011122234444444555666776 77899999998753 34555442112223345999999999
Q ss_pred CCCCCCCCCCCCcCCccceeEEeecCCCC-------CCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc-c
Q 044575 172 HYSYPRLPSIKGMDKWKRKQMHSHIYRVP-------EPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE-G 243 (454)
Q Consensus 172 ~~~~p~~p~i~G~~~~~~~~~~~~~~~~~-------~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~-~ 243 (454)
+.|+.|++||.+.. .+.+...+.+. ....+++|+|||+|++|+|+|..+.+.+++|+++.+.+.+.+ .
T Consensus 113 --~~~~~~~i~g~~~~--~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~ 188 (444)
T PRK09564 113 --ARPIIPPIKNINLE--NVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDS 188 (444)
T ss_pred --CCCCCCCCCCcCCC--CEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchh
Confidence 89999999987532 12333222111 123568999999999999999999999999999998876533 2
Q ss_pred ch----h----hhcc-CCCeEEcCceeEEecCCc--EEEeCCCEEeeceEEEccCcccCCcCCC-------CCCceeeCC
Q 044575 244 LS----K----VISK-HNNLHLHPQIDCLREDGR--VTFVDGCWVTADTILYCTGYSYSFPFLD-------TKGIVVVDD 305 (454)
Q Consensus 244 ~~----~----~l~~-~~~i~~~~~v~~v~~~~~--v~~~dG~~i~~D~vI~atG~~~~~~~l~-------~~g~i~v~~ 305 (454)
+. + .+.+ ..+++.+..|+++.+++. ....++.++++|.+|+|+|+.|+.+++. ++|.+.+|+
T Consensus 189 ~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~ 268 (444)
T PRK09564 189 FDKEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDKGEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDE 268 (444)
T ss_pred cCHHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCCCEEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECC
Confidence 22 2 2222 247888899999875542 2334666899999999999999987654 345566666
Q ss_pred CCcccccCcccCCCCCCCceEecccccc-----------cchhHHHHHHHHHHHHHcCCC
Q 044575 306 DRVGPLYEHTFPPSLAPSLSFVGIPRKL-----------IGFPFFESQAKWIAQLLSGKR 354 (454)
Q Consensus 306 ~~~~~~~~~~~~~~~~p~l~~iG~~~~~-----------~~~~~a~~qa~~~a~~i~g~~ 354 (454)
..+ ++.|++|++||+... +..+.|..||+++|++|.|..
T Consensus 269 ~~~----------t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~~ 318 (444)
T PRK09564 269 YGE----------TSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRH 318 (444)
T ss_pred Ccc----------cCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCCC
Confidence 443 346999999999853 234689999999999999864
No 47
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.97 E-value=7.8e-30 Score=257.11 Aligned_cols=294 Identities=15% Similarity=0.159 Sum_probs=191.9
Q ss_pred cEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccc--cccccceecCCccccccCCCCCCCCCC
Q 044575 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHS--SVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
+|+||||||||++||..+++.|.+|+|||+. .+||+|.+.+|+|+|.+.. ..+...+.. .. + +.+...
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~n~gciPsk~l~~~a~~~~~~~~~-~~--~---g~~~~~--- 71 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCLNEGCMPTKSLLESAEVHDKVKKA-NH--F---GITLPN--- 71 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCCCCccccchHHHHHHHHHHHHHHH-Hh--c---CccccC---
Confidence 7999999999999999999999999999986 6999999999999883211 111111110 00 0 010000
Q ss_pred CCCCCCCCHHHHHHHHHHHHHH-----------hCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEE
Q 044575 92 RDVRRFPGHKELWLYLKDFCQR-----------FGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVE 160 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~-----------~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 160 (454)
.......+.+..+..+..++ .++. .+..++..++ .. ...|...++ ..+
T Consensus 72 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~g~a~~~~---~~---------~v~v~~~~~----~~~ 130 (458)
T PRK06912 72 --GSISIDWKQMQARKSQIVTQLVQGIQYLMKKNKIK---VIQGKASFET---DH---------RVRVEYGDK----EEV 130 (458)
T ss_pred --CCCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcE---EEEEEEEEcc---CC---------EEEEeeCCC----cEE
Confidence 00112334555444443333 1222 1222333232 11 444443221 236
Q ss_pred EEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575 161 EVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI 240 (454)
Q Consensus 161 ~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~ 240 (454)
+.||+|||||| +.|+.|+++|.+.. .++++....... ..+++++|||+|++|+|+|..+.+.+.+|+++++.+.+
T Consensus 131 ~~~d~lviATG--s~p~~~p~~~~~~~--~v~~~~~~~~~~-~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~l 205 (458)
T PRK06912 131 VDAEQFIIAAG--SEPTELPFAPFDGK--WIINSKHAMSLP-SIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQL 205 (458)
T ss_pred EECCEEEEeCC--CCCCCCCCCCCCCC--eEEcchHHhCcc-ccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 89999999999 88887777765421 233333222211 23579999999999999999999999999999998877
Q ss_pred Cccch--------hhhcc-CCCeEEcCceeEEecCC-cEEEe-CCC--EEeeceEEEccCcccCCcCCC--C------CC
Q 044575 241 SEGLS--------KVISK-HNNLHLHPQIDCLREDG-RVTFV-DGC--WVTADTILYCTGYSYSFPFLD--T------KG 299 (454)
Q Consensus 241 ~~~~~--------~~l~~-~~~i~~~~~v~~v~~~~-~v~~~-dG~--~i~~D~vI~atG~~~~~~~l~--~------~g 299 (454)
.+.+. +.+.+ ..+++.+..|+++..++ .+.+. +|+ ++++|.||+|||++|+.+++. . ++
T Consensus 206 l~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~ 285 (458)
T PRK06912 206 LPGEDEDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNK 285 (458)
T ss_pred CccccHHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCCCCCchhcCceecCC
Confidence 54432 22332 35788888899987543 34443 443 588999999999999987642 1 11
Q ss_pred ceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCC
Q 044575 300 IVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGK 353 (454)
Q Consensus 300 ~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~ 353 (454)
.+.+|++.+ ++.|++|++||+...+ ..+.|..|++.+|.++.|.
T Consensus 286 gi~Vd~~~~----------ts~~~VyA~GD~~~~~~la~~A~~~g~~aa~~~~g~ 330 (458)
T PRK06912 286 GISVNEHMQ----------TNVPHIYACGDVIGGIQLAHVAFHEGTTAALHASGE 330 (458)
T ss_pred CEEeCCCee----------cCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 244554433 3569999999998643 4578999999999999885
No 48
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.97 E-value=7.9e-30 Score=251.18 Aligned_cols=270 Identities=20% Similarity=0.277 Sum_probs=190.2
Q ss_pred CcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575 13 KNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK 90 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (454)
++|||||||+||+++|+.|++. +.+|+||++++.. .|... ..+. .+
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~------------------~y~~~--~l~~---~~--------- 50 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGD------------------EYNKP--DLSH---VF--------- 50 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCC------------------CcCcC--cCcH---HH---------
Confidence 5899999999999999999886 4689999987632 11000 0000 00
Q ss_pred CCCCCCCCCHHHHHH-HHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEc
Q 044575 91 GRDVRRFPGHKELWL-YLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA 169 (454)
Q Consensus 91 ~~~~~~~~~~~~~~~-yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViA 169 (454)
......+++.. ...++++++++. ++++++|++|+.. .++|++. +. .+.||+||||
T Consensus 51 ----~~~~~~~~~~~~~~~~~~~~~gv~--~~~~~~V~~id~~------------~~~v~~~-~~-----~~~yd~LVlA 106 (377)
T PRK04965 51 ----SQGQRADDLTRQSAGEFAEQFNLR--LFPHTWVTDIDAE------------AQVVKSQ-GN-----QWQYDKLVLA 106 (377)
T ss_pred ----hCCCCHHHhhcCCHHHHHHhCCCE--EECCCEEEEEECC------------CCEEEEC-Ce-----EEeCCEEEEC
Confidence 00112234443 255677778877 7889999999875 4456643 22 6899999999
Q ss_pred cCCCCCCCCCCCCCcCCccceeEEeecCCC-----CCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCcc-
Q 044575 170 TGHYSYPRLPSIKGMDKWKRKQMHSHIYRV-----PEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEG- 243 (454)
Q Consensus 170 tG~~~~p~~p~i~G~~~~~~~~~~~~~~~~-----~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~- 243 (454)
|| +.|..|++||.+. .+......+ .....+++|+|||+|.+|+|+|..|++.+.+|+++++.+.+.+.
T Consensus 107 TG--~~~~~p~i~G~~~----v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~ 180 (377)
T PRK04965 107 TG--ASAFVPPIPGREL----MLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASL 180 (377)
T ss_pred CC--CCCCCCCCCCCce----EEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchh
Confidence 99 8899999999754 222211111 11125689999999999999999999999999999998875332
Q ss_pred ----c----hhhhccC-CCeEEcCceeEEecCC---cEEEeCCCEEeeceEEEccCcccCCcCCCCC-----CceeeCCC
Q 044575 244 ----L----SKVISKH-NNLHLHPQIDCLREDG---RVTFVDGCWVTADTILYCTGYSYSFPFLDTK-----GIVVVDDD 306 (454)
Q Consensus 244 ----~----~~~l~~~-~~i~~~~~v~~v~~~~---~v~~~dG~~i~~D~vI~atG~~~~~~~l~~~-----g~i~v~~~ 306 (454)
+ .+.+.+. .+++.+..|+++..++ .+.+.+|+++++|.||+|+|++|+.+++... +.+.+|++
T Consensus 181 ~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~~gi~vd~~ 260 (377)
T PRK04965 181 MPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAVNRGIVVDSY 260 (377)
T ss_pred CCHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcchHHHHHCCCCcCCCEEECCC
Confidence 1 1223322 4677788899987543 4678899999999999999999997764321 22555654
Q ss_pred CcccccCcccCCCCCCCceEecccccc-----cchhHHHHHHHHHHHHHcCCC
Q 044575 307 RVGPLYEHTFPPSLAPSLSFVGIPRKL-----IGFPFFESQAKWIAQLLSGKR 354 (454)
Q Consensus 307 ~~~~~~~~~~~~~~~p~l~~iG~~~~~-----~~~~~a~~qa~~~a~~i~g~~ 354 (454)
.. ++.|++|++||+... +.+..|..||+++|++|.|..
T Consensus 261 l~----------ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~g~~ 303 (377)
T PRK04965 261 LQ----------TSAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLLGQN 303 (377)
T ss_pred cc----------cCCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhcCCC
Confidence 43 456999999999743 224567899999999999964
No 49
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.97 E-value=1.2e-29 Score=251.35 Aligned_cols=274 Identities=15% Similarity=0.170 Sum_probs=185.4
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCC--cEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGH--RVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLK 89 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~--~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (454)
.++|||||||+||++||..|++.|. +|+||++++... |..+ ..++....- +..
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~----y~r~----------------~l~~~~~~~---~~~-- 57 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP----YERP----------------PLSKSMLLE---DSP-- 57 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC----CCCC----------------CCCHHHHCC---CCc--
Confidence 3689999999999999999999876 899999976431 1100 000000000 000
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEc
Q 044575 90 KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA 169 (454)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViA 169 (454)
. ..+... .++..+.++. ++.++.|..|+.. ..+|.+.++. ++.||+||||
T Consensus 58 ---~-~~~~~~-------~~~~~~~~i~--~~~g~~V~~id~~------------~~~v~~~~g~-----~~~yd~LViA 107 (396)
T PRK09754 58 ---Q-LQQVLP-------ANWWQENNVH--LHSGVTIKTLGRD------------TRELVLTNGE-----SWHWDQLFIA 107 (396)
T ss_pred ---c-ccccCC-------HHHHHHCCCE--EEcCCEEEEEECC------------CCEEEECCCC-----EEEcCEEEEc
Confidence 0 000000 1223345666 7778899999875 4456666554 7899999999
Q ss_pred cCCCCCCCCCCCCCcCCccceeEEeecCCC-----CCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCcc-
Q 044575 170 TGHYSYPRLPSIKGMDKWKRKQMHSHIYRV-----PEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEG- 243 (454)
Q Consensus 170 tG~~~~p~~p~i~G~~~~~~~~~~~~~~~~-----~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~- 243 (454)
|| +.|+.|++++... ..++......+ .....+++|+|||+|.+|+|+|..|++.|.+|+++++.+.+.+.
T Consensus 108 TG--s~~~~~p~~~~~~--~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~ 183 (396)
T PRK09754 108 TG--AAARPLPLLDALG--ERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN 183 (396)
T ss_pred cC--CCCCCCCCCCcCC--CCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhh
Confidence 99 8887776655322 11221111111 11124689999999999999999999999999999998876322
Q ss_pred ----chhh----hc-cCCCeEEcCceeEEecCC--cEEEeCCCEEeeceEEEccCcccCCcCCC-----CCCceeeCCCC
Q 044575 244 ----LSKV----IS-KHNNLHLHPQIDCLREDG--RVTFVDGCWVTADTILYCTGYSYSFPFLD-----TKGIVVVDDDR 307 (454)
Q Consensus 244 ----~~~~----l~-~~~~i~~~~~v~~v~~~~--~v~~~dG~~i~~D~vI~atG~~~~~~~l~-----~~g~i~v~~~~ 307 (454)
+.+. +. ..++++.+..|+++..++ .+.+.+|+++++|.||+|+|.+|+..++. .++.+.+|++.
T Consensus 184 ~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~~gi~vd~~~ 263 (396)
T PRK09754 184 APPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVVIYGIGISANDQLAREANLDTANGIVIDEAC 263 (396)
T ss_pred cCHHHHHHHHHHHHHCCCEEEeCCeeEEEEcCCEEEEEECCCCEEECCEEEECCCCChhhHHHHhcCCCcCCCEEECCCC
Confidence 2221 22 235788888999987543 35678999999999999999999977643 22446666655
Q ss_pred cccccCcccCCCCCCCceEecccccc----------cchhHHHHHHHHHHHHHcCCC
Q 044575 308 VGPLYEHTFPPSLAPSLSFVGIPRKL----------IGFPFFESQAKWIAQLLSGKR 354 (454)
Q Consensus 308 ~~~~~~~~~~~~~~p~l~~iG~~~~~----------~~~~~a~~qa~~~a~~i~g~~ 354 (454)
+ ++.|++|++||+... ..++.|..||+.+|++|.|..
T Consensus 264 ~----------ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g~~ 310 (396)
T PRK09754 264 R----------TCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLGLP 310 (396)
T ss_pred c----------cCCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcCCC
Confidence 4 456999999998732 235789999999999999864
No 50
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.97 E-value=1.8e-29 Score=267.64 Aligned_cols=274 Identities=20% Similarity=0.284 Sum_probs=195.8
Q ss_pred CcEEEECcChHHHHHHHHHHHc----CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCC
Q 044575 13 KNVCVIGAGPSGLVAARELRKE----GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVL 88 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~----g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (454)
++|||||+|+||+.+|..|++. +++|+||+++++++ |.++ .. +. .+..
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~----Y~r~--------------~L--~~---~~~~----- 55 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA----YDRV--------------HL--SS---YFSH----- 55 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc----ccCC--------------cc--hH---hHcC-----
Confidence 4899999999999999999864 47999999987642 1111 00 00 0000
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEE
Q 044575 89 KKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVV 168 (454)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVi 168 (454)
...+++.....++.++.++. ++.+++|++|+.. ..+|.+.++. ++.||+|||
T Consensus 56 ---------~~~~~l~~~~~~~~~~~gI~--~~~g~~V~~Id~~------------~~~V~~~~G~-----~i~yD~LVI 107 (847)
T PRK14989 56 ---------HTAEELSLVREGFYEKHGIK--VLVGERAITINRQ------------EKVIHSSAGR-----TVFYDKLIM 107 (847)
T ss_pred ---------CCHHHccCCCHHHHHhCCCE--EEcCCEEEEEeCC------------CcEEEECCCc-----EEECCEEEE
Confidence 01133333334555667777 8888899999865 4567766554 789999999
Q ss_pred ccCCCCCCCCCCCCCcCCccceeEEeec-CCC--CCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc-cc
Q 044575 169 ATGHYSYPRLPSIKGMDKWKRKQMHSHI-YRV--PEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE-GL 244 (454)
Q Consensus 169 AtG~~~~p~~p~i~G~~~~~~~~~~~~~-~~~--~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~-~~ 244 (454)
||| +.|+.|++||.+......+++.. ... .....+++++|||+|.+|+|+|..|++.|.+|+++++.+.+.+ .+
T Consensus 108 ATG--s~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~l 185 (847)
T PRK14989 108 ATG--SYPWIPPIKGSETQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQL 185 (847)
T ss_pred CCC--CCcCCCCCCCCCCCCeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhc
Confidence 999 89999999998643211111111 000 0112468999999999999999999999999999999887643 22
Q ss_pred --------hhhhcc-CCCeEEcCceeEEecCC-----cEEEeCCCEEeeceEEEccCcccCCcCCC-------CCCceee
Q 044575 245 --------SKVISK-HNNLHLHPQIDCLREDG-----RVTFVDGCWVTADTILYCTGYSYSFPFLD-------TKGIVVV 303 (454)
Q Consensus 245 --------~~~l~~-~~~i~~~~~v~~v~~~~-----~v~~~dG~~i~~D~vI~atG~~~~~~~l~-------~~g~i~v 303 (454)
.+.+.+ .++++.+..++++..++ .+.+.||+++++|.||+|+|++|+..++. ++|.|.|
T Consensus 186 d~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~V 265 (847)
T PRK14989 186 DQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVI 265 (847)
T ss_pred CHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEE
Confidence 223333 34788888899886432 47788999999999999999999987643 3466777
Q ss_pred CCCCcccccCcccCCCCCCCceEeccccccc-----chhHHHHHHHHHHHHHcCCC
Q 044575 304 DDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-----GFPFFESQAKWIAQLLSGKR 354 (454)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-----~~~~a~~qa~~~a~~i~g~~ 354 (454)
|++.+ ++.|++|++|++.... ....+..||+.+|.+|.|..
T Consensus 266 D~~l~----------Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~g~~ 311 (847)
T PRK14989 266 NDSCQ----------TSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLLGSE 311 (847)
T ss_pred CCCCc----------CCCCCEEEeecceeEcCcccccHHHHHHHHHHHHHHhcCCC
Confidence 77665 5579999999998542 23567899999999999874
No 51
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.97 E-value=5.3e-29 Score=264.49 Aligned_cols=271 Identities=18% Similarity=0.227 Sum_probs=193.0
Q ss_pred EEEECcChHHHHHHHHHHHc---CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 15 VCVIGAGPSGLVAARELRKE---GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 15 VvIIGaG~aGl~aA~~l~~~---g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
|||||||+||+++|.+|++. +++|+|||+++.++ |.++ . .+.. +.+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~----y~r~--------------~--L~~~---l~g-------- 49 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN----YNRI--------------L--LSSV---LQG-------- 49 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC----cccc--------------c--ccHH---HCC--------
Confidence 68999999999999999875 46999999988652 1110 0 0000 000
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG 171 (454)
-.+.+++.....++.++.++. ++++++|++|+.. .++|++.++. ++.||+||||||
T Consensus 50 -----~~~~~~l~~~~~~~~~~~gv~--~~~g~~V~~Id~~------------~k~V~~~~g~-----~~~yD~LVlATG 105 (785)
T TIGR02374 50 -----EADLDDITLNSKDWYEKHGIT--LYTGETVIQIDTD------------QKQVITDAGR-----TLSYDKLILATG 105 (785)
T ss_pred -----CCCHHHccCCCHHHHHHCCCE--EEcCCeEEEEECC------------CCEEEECCCc-----EeeCCEEEECCC
Confidence 001123332334455666777 8889999999875 5567776654 789999999999
Q ss_pred CCCCCCCCCCCCcCCccceeEEeecCCCC-----CCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCcc-c-
Q 044575 172 HYSYPRLPSIKGMDKWKRKQMHSHIYRVP-----EPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEG-L- 244 (454)
Q Consensus 172 ~~~~p~~p~i~G~~~~~~~~~~~~~~~~~-----~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~-~- 244 (454)
+.|+.|++||.+... ++......+. ....+++++|||+|.+|+|+|..|++.|.+|+++++.+.+.+. +
T Consensus 106 --s~p~~p~ipG~~~~~--v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld 181 (785)
T TIGR02374 106 --SYPFILPIPGADKKG--VYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLD 181 (785)
T ss_pred --CCcCCCCCCCCCCCC--EEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcC
Confidence 899999999976422 1211111111 1124689999999999999999999999999999998876321 2
Q ss_pred -------hhhhccC-CCeEEcCceeEEecCC---cEEEeCCCEEeeceEEEccCcccCCcCCCC-----CCceeeCCCCc
Q 044575 245 -------SKVISKH-NNLHLHPQIDCLREDG---RVTFVDGCWVTADTILYCTGYSYSFPFLDT-----KGIVVVDDDRV 308 (454)
Q Consensus 245 -------~~~l~~~-~~i~~~~~v~~v~~~~---~v~~~dG~~i~~D~vI~atG~~~~~~~l~~-----~g~i~v~~~~~ 308 (454)
.+.+.+. ++++.+..++++..++ .|.++||+++++|.||+|+|++|+.+++.. ++.+.+|++.+
T Consensus 182 ~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~~gl~~~ggI~Vd~~~~ 261 (785)
T TIGR02374 182 QTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSAGIKVNRGIIVNDSMQ 261 (785)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcCcHHHHhcCCccCCCEEECCCcc
Confidence 2223333 4788888888886543 478899999999999999999999876432 24566666554
Q ss_pred ccccCcccCCCCCCCceEeccccccc-----chhHHHHHHHHHHHHHcCCC
Q 044575 309 GPLYEHTFPPSLAPSLSFVGIPRKLI-----GFPFFESQAKWIAQLLSGKR 354 (454)
Q Consensus 309 ~~~~~~~~~~~~~p~l~~iG~~~~~~-----~~~~a~~qa~~~a~~i~g~~ 354 (454)
++.|++|++|++.... .+..+..||+.+|.+|.|..
T Consensus 262 ----------Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~g~~ 302 (785)
T TIGR02374 262 ----------TSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHICGVE 302 (785)
T ss_pred ----------cCCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHhcCCC
Confidence 4579999999997532 23457799999999999976
No 52
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.96 E-value=1.2e-28 Score=247.22 Aligned_cols=264 Identities=27% Similarity=0.339 Sum_probs=181.0
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK 90 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (454)
..++|+|||||++|+++|..|++.|++|+|||+.+.+||.+.+.
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g------------------------------------ 175 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYG------------------------------------ 175 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeec------------------------------------
Confidence 46899999999999999999999999999999999899887632
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575 91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT 170 (454)
Q Consensus 91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt 170 (454)
.+.|....++.....+...+.++. +++++.| .+.+++.+. ...||+|||||
T Consensus 176 ---ip~~~~~~~~~~~~~~~l~~~gv~--~~~~~~v------------------~~~v~~~~~------~~~yd~viiAt 226 (449)
T TIGR01316 176 ---IPEFRLPKEIVVTEIKTLKKLGVT--FRMNFLV------------------GKTATLEEL------FSQYDAVFIGT 226 (449)
T ss_pred ---CCCccCCHHHHHHHHHHHHhCCcE--EEeCCcc------------------CCcCCHHHH------HhhCCEEEEeC
Confidence 001111145555555556666766 6666543 112333221 23699999999
Q ss_pred CCCCCCCCCCCCCcCCccceeEEeecC----------C----CCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecc
Q 044575 171 GHYSYPRLPSIKGMDKWKRKQMHSHIY----------R----VPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAK 236 (454)
Q Consensus 171 G~~~~p~~p~i~G~~~~~~~~~~~~~~----------~----~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r 236 (454)
|. +.|+.|++||.+. .+ +++...+ . ......+++|+|||+|.+|+|+|..+.+.|.+|+++.|
T Consensus 227 Ga-~~p~~~~ipG~~~-~g-v~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~ 303 (449)
T TIGR01316 227 GA-GLPKLMNIPGEEL-CG-VYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYR 303 (449)
T ss_pred CC-CCCCcCCCCCCCC-CC-cEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEee
Confidence 93 2688888998753 11 2222211 0 11234689999999999999999999999999999998
Q ss_pred cCCcCc-----cchhhhccCCCeEEcCceeEEecC--C---cEEEe---------CC-----------CEEeeceEEEcc
Q 044575 237 SLNISE-----GLSKVISKHNNLHLHPQIDCLRED--G---RVTFV---------DG-----------CWVTADTILYCT 286 (454)
Q Consensus 237 ~~~~~~-----~~~~~l~~~~~i~~~~~v~~v~~~--~---~v~~~---------dG-----------~~i~~D~vI~at 286 (454)
++.... .+..+..+.++++....+.++..+ + .|.+. +| .++++|.||+|+
T Consensus 304 ~~~~~~~~~~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~Ai 383 (449)
T TIGR01316 304 RTREDMTARVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAI 383 (449)
T ss_pred cCcccCCCCHHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECC
Confidence 764311 111222334577777777777532 2 23333 23 258899999999
Q ss_pred CcccCCcCCCC-------CCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcC
Q 044575 287 GYSYSFPFLDT-------KGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSG 352 (454)
Q Consensus 287 G~~~~~~~l~~-------~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g 352 (454)
|+.|+..++.. +|.+.+|+... ++.|++|++||+..++ ....|..||+.+|..|..
T Consensus 384 G~~p~~~~l~~~gl~~~~~G~i~vd~~~~----------Ts~~~VfA~GD~~~g~~~v~~Ai~~G~~AA~~I~~ 447 (449)
T TIGR01316 384 GNGSNPIMAETTRLKTSERGTIVVDEDQR----------TSIPGVFAGGDIILGAATVIRAMGQGKRAAKSINE 447 (449)
T ss_pred CCCCCchhhhccCcccCCCCeEEeCCCCc----------cCCCCEEEecCCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 99999876542 34455554332 4579999999998654 457899999999988743
No 53
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.96 E-value=2.5e-29 Score=230.34 Aligned_cols=316 Identities=16% Similarity=0.168 Sum_probs=202.8
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCC--Cccccccccceec-CCccccccCCCCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQT--EVHSSVYASLRLT-SPREIMGYTDFPFV 87 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 87 (454)
..+||+|||+||+|..||..+++.|++.+++|++..+||+|.+.+|+|+| +..|.+|+.+... ..+.....+...+
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~- 116 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSL- 116 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceec-
Confidence 46999999999999999999999999999999999999999999999998 4445555544431 1111111111111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCE
Q 044575 88 LKKGRDVRRFPGHKELWLYLKDFCQRFG--LREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDA 165 (454)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~--~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~ 165 (454)
....+.....+.++++. +...+. .-.|+.+.- .+.+.+ ..+|+....+ +....+.+++
T Consensus 117 -----------dl~~~~~~k~~~vk~Lt~gi~~lfk-knkV~~~kG---~gsf~~----p~~V~v~k~d-g~~~ii~aKn 176 (506)
T KOG1335|consen 117 -----------DLQAMMKAKDNAVKQLTGGIENLFK-KNKVTYVKG---FGSFLD----PNKVSVKKID-GEDQIIKAKN 176 (506)
T ss_pred -----------CHHHHHHHHHHHHHHHhhHHHHHhh-hcCeEEEee---eEeecC----CceEEEeccC-CCceEEeeee
Confidence 22344444444443331 110011 112222221 111111 2234443322 3456889999
Q ss_pred EEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccch
Q 044575 166 VVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLS 245 (454)
Q Consensus 166 vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~ 245 (454)
+||||| | ..+++||+.--...++.|. -...-..-+++++|||+|.+|+|++.-..++|.+||+++--+.+.+.++
T Consensus 177 IiiATG--S--eV~~~PGI~IDekkIVSSt-gALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD 251 (506)
T KOG1335|consen 177 IIIATG--S--EVTPFPGITIDEKKIVSST-GALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMD 251 (506)
T ss_pred EEEEeC--C--ccCCCCCeEecCceEEecC-CccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccC
Confidence 999999 4 2344568754334444433 2222233458999999999999999999999999999998887755444
Q ss_pred hhh--------cc-CCCeEEcCceeEEecCC----cEEEeC---C--CEEeeceEEEccCcccCCcCCCC-CCceeeCCC
Q 044575 246 KVI--------SK-HNNLHLHPQIDCLREDG----RVTFVD---G--CWVTADTILYCTGYSYSFPFLDT-KGIVVVDDD 306 (454)
Q Consensus 246 ~~l--------~~-~~~i~~~~~v~~v~~~~----~v~~~d---G--~~i~~D~vI~atG~~~~~~~l~~-~g~i~v~~~ 306 (454)
..+ .+ ...+.+++.+...+.++ .|.+.+ | ++++||++++|+|++|-+.-|+- +-.+..|+.
T Consensus 252 ~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r 331 (506)
T KOG1335|consen 252 GEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKR 331 (506)
T ss_pred HHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccc
Confidence 332 22 24788888888877543 244433 3 35789999999999998776541 112222332
Q ss_pred CcccccCcccCCCCCCCceEecccccccch-hHHHHHHHHHHHHHcCCC
Q 044575 307 RVGPLYEHTFPPSLAPSLSFVGIPRKLIGF-PFFESQAKWIAQLLSGKR 354 (454)
Q Consensus 307 ~~~~~~~~~~~~~~~p~l~~iG~~~~~~~~-~~a~~qa~~~a~~i~g~~ 354 (454)
.+. .....|. +..|++|+|||+..++.+ +-||.|+..+...++|..
T Consensus 332 ~rv-~v~~~f~-t~vP~i~~IGDv~~gpMLAhkAeeegI~~VE~i~g~~ 378 (506)
T KOG1335|consen 332 GRV-IVNTRFQ-TKVPHIYAIGDVTLGPMLAHKAEEEGIAAVEGIAGGH 378 (506)
T ss_pred cce-ecccccc-ccCCceEEecccCCcchhhhhhhhhchhheeeecccC
Confidence 221 1122233 467999999999987765 799999999999998773
No 54
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.96 E-value=1.7e-29 Score=235.27 Aligned_cols=350 Identities=17% Similarity=0.127 Sum_probs=229.6
Q ss_pred cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCC
Q 044575 10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLK 89 (454)
Q Consensus 10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (454)
.++++|||+|+|++|.+.++.|...-++|+||+.++++--+|. .|+. +-+.
T Consensus 53 ~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPL----LpS~--------------~vGT----------- 103 (491)
T KOG2495|consen 53 GKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPL----LPST--------------TVGT----------- 103 (491)
T ss_pred CCCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeec----cCCc--------------cccc-----------
Confidence 3568999999999999999999999999999999987633333 2211 1000
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecC---CCeEEEEEeCEE
Q 044575 90 KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKK---ADKVVEEVFDAV 166 (454)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~d~v 166 (454)
..-+.+.+.+...+.+.+-. .-.+..+..+|++. ..+|.++... ...+..+.||||
T Consensus 104 --------ve~rSIvEPIr~i~r~k~~~-~~y~eAec~~iDp~------------~k~V~~~s~t~~~~~~e~~i~YDyL 162 (491)
T KOG2495|consen 104 --------VELRSIVEPIRAIARKKNGE-VKYLEAECTKIDPD------------NKKVHCRSLTADSSDKEFVIGYDYL 162 (491)
T ss_pred --------eeehhhhhhHHHHhhccCCC-ceEEecccEeeccc------------ccEEEEeeeccCCCcceeeecccEE
Confidence 11244556666666654432 12445666677765 3344444322 134568899999
Q ss_pred EEccCCCCCCCCCCCCCcCCc---cceeEEeecC----------------CCCCCCCCCeEEEEcCCCCHHHHHHHHhhh
Q 044575 167 VVATGHYSYPRLPSIKGMDKW---KRKQMHSHIY----------------RVPEPFRNEVVVVVGNSLSGQDISMELVEV 227 (454)
Q Consensus 167 ViAtG~~~~p~~p~i~G~~~~---~~~~~~~~~~----------------~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~ 227 (454)
|+|+| +.++.+.+||..+. ...+-++... .+++..+--++||||||++|+|+|.+|++.
T Consensus 163 ViA~G--A~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Df 240 (491)
T KOG2495|consen 163 VIAVG--AEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADF 240 (491)
T ss_pred EEecc--CCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHH
Confidence 99999 89999999998763 2222222222 111222334899999999999999999975
Q ss_pred c--------------CeEEEecccCCcCccchhhhccC---------CCeEEcCceeEEecCCcEEEeCC----CEEeec
Q 044575 228 A--------------KEVHLSAKSLNISEGLSKVISKH---------NNLHLHPQIDCLREDGRVTFVDG----CWVTAD 280 (454)
Q Consensus 228 ~--------------~~V~l~~r~~~~~~~~~~~l~~~---------~~i~~~~~v~~v~~~~~v~~~dG----~~i~~D 280 (454)
- .+||+++..+.+++.|++.+.++ .++..++.|..+.+.. ++.+++ ++|++-
T Consensus 241 i~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~~-I~~~~~~g~~~~iPYG 319 (491)
T KOG2495|consen 241 IPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKVTEKT-IHAKTKDGEIEEIPYG 319 (491)
T ss_pred HHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhhccceeecccEEEeecCcE-EEEEcCCCceeeecce
Confidence 2 26999999998888887766543 3677778888886653 665544 468899
Q ss_pred eEEEccCcccCCcC-------CCCCC--ceeeCCCCcccccCcccCCCCCCCceEecccccc----cchhHHHHHHHHHH
Q 044575 281 TILYCTGYSYSFPF-------LDTKG--IVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKL----IGFPFFESQAKWIA 347 (454)
Q Consensus 281 ~vI~atG~~~~~~~-------l~~~g--~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~----~~~~~a~~qa~~~a 347 (454)
+++|+||..|. |+ +++.+ .+.+|+.+++ .+.+|+|++|||... ++.++|++||.|+|
T Consensus 320 ~lVWatG~~~r-p~~k~lm~~i~e~~rr~L~vDE~LrV---------~G~~nvfAiGDca~~~~~~~tAQVA~QqG~yLA 389 (491)
T KOG2495|consen 320 LLVWATGNGPR-PVIKDLMKQIDEQGRRGLAVDEWLRV---------KGVKNVFAIGDCADQRGLKPTAQVAEQQGAYLA 389 (491)
T ss_pred EEEecCCCCCc-hhhhhHhhcCCccCceeeeeeceeec---------cCcCceEEeccccccccCccHHHHHHHHHHHHH
Confidence 99999999987 43 33455 6777887664 346789999999822 35579999999999
Q ss_pred HHHcCCC---CCCCHHHHHHHHHHHHhhhhhcCCCCCcccc--------------------cccHHHHHHHHH-HcCCCC
Q 044575 348 QLLSGKR---TLPSWDQMMQSVKEFYHSRDVAGIPKHNTHD--------------------IANFEYCDRYAD-QIGFPH 403 (454)
Q Consensus 348 ~~i~g~~---~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~y~~~l~~-~~g~~~ 403 (454)
+++.-.. .+|..+.+. ......+..+ +-++.|. ....+.+.++.| ...+..
T Consensus 390 k~fn~m~k~~~~~e~~~~r-~~~~~~~~f~----PF~Y~H~GalA~lG~ekaiAdl~~g~~~~~~G~~s~~lWrS~Yls~ 464 (491)
T KOG2495|consen 390 KNFNKMGKGGNLPEGPSAR-LRGEGRHQFK----PFKYKHLGALAYLGREKAIADLPVGKMWVSAGGSSFWLWRSAYLSK 464 (491)
T ss_pred HHHHHHhcccCCCccchhh-hhhhhhhccC----CcccccccceeeccccchhhcCccCCeeeeccchhhHHHHHHHHHH
Confidence 9885322 222211111 1111111111 1111111 001245555555 666666
Q ss_pred chHHHHHHHHHHhhCCccccccccCC
Q 044575 404 LEEWRKGLCISALVNSDANLETYRDS 429 (454)
Q Consensus 404 ~~~~~~~l~~~~~~~~~~~~~~~r~~ 429 (454)
..+||+|.+ +..+|....++.||.
T Consensus 465 ~~S~R~R~l--V~~dW~~~~~fGRd~ 488 (491)
T KOG2495|consen 465 LVSWRNRFL--VAIDWEKTFFFGRDS 488 (491)
T ss_pred hhhhhhhee--eeeheeeeEEecccc
Confidence 678999999 999999888888885
No 55
>PRK12831 putative oxidoreductase; Provisional
Probab=99.96 E-value=1.7e-28 Score=246.40 Aligned_cols=268 Identities=22% Similarity=0.284 Sum_probs=181.0
Q ss_pred cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCC
Q 044575 10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLK 89 (454)
Q Consensus 10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (454)
...++|+||||||||++||..|++.|++|+|||+.+.+||.+.+. ++.+.+
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g--------------------------ip~~~l--- 188 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYG--------------------------IPEFRL--- 188 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeec--------------------------CCCccC---
Confidence 346899999999999999999999999999999999999988642 001111
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEc
Q 044575 90 KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA 169 (454)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViA 169 (454)
+.+++..+..++++++++. +++++.|.. .+++.+.. ..+.||+||||
T Consensus 189 ---------~~~~~~~~~~~~~~~~gv~--i~~~~~v~~------------------~v~~~~~~----~~~~~d~viiA 235 (464)
T PRK12831 189 ---------PKETVVKKEIENIKKLGVK--IETNVVVGK------------------TVTIDELL----EEEGFDAVFIG 235 (464)
T ss_pred ---------CccHHHHHHHHHHHHcCCE--EEcCCEECC------------------cCCHHHHH----hccCCCEEEEe
Confidence 1134666666777778877 777875521 11121111 13469999999
Q ss_pred cCCCCCCCCCCCCCcCCccceeEEeec----------CC---CCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecc
Q 044575 170 TGHYSYPRLPSIKGMDKWKRKQMHSHI----------YR---VPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAK 236 (454)
Q Consensus 170 tG~~~~p~~p~i~G~~~~~~~~~~~~~----------~~---~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r 236 (454)
||. ..|+.|++||.+... ++.... +. ......+++|+|||+|++|+|+|..+.+.|.+|+++.|
T Consensus 236 tGa-~~~~~l~ipG~~~~g--V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r 312 (464)
T PRK12831 236 SGA-GLPKFMGIPGENLNG--VFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYR 312 (464)
T ss_pred CCC-CCCCCCCCCCcCCcC--cEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEee
Confidence 993 268888899875311 121111 11 11234689999999999999999999999999999998
Q ss_pred cCCc--Cccc---hhhhccCCCeEEcCceeEEec--CCc---EEEe------------------CCC--EEeeceEEEcc
Q 044575 237 SLNI--SEGL---SKVISKHNNLHLHPQIDCLRE--DGR---VTFV------------------DGC--WVTADTILYCT 286 (454)
Q Consensus 237 ~~~~--~~~~---~~~l~~~~~i~~~~~v~~v~~--~~~---v~~~------------------dG~--~i~~D~vI~at 286 (454)
+... .... .....+.++++....+.++.. ++. |.+. +|+ ++++|.||+|+
T Consensus 313 ~~~~~m~a~~~e~~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~Ai 392 (464)
T PRK12831 313 RSEEELPARVEEVHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSL 392 (464)
T ss_pred cCcccCCCCHHHHHHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECC
Confidence 6542 2111 122234456777777777642 222 2221 233 58899999999
Q ss_pred CcccCCcCCCC--------CCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHc
Q 044575 287 GYSYSFPFLDT--------KGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLS 351 (454)
Q Consensus 287 G~~~~~~~l~~--------~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~ 351 (454)
|+.|+..++.. .|.+.+|+. .+. ++.|++|++||+..++ ....|..||+.+|..|.
T Consensus 393 G~~p~~~~~~~~~gl~~~~~G~i~vd~~--------~~~-Ts~pgVfAaGD~~~g~~~v~~Ai~~G~~AA~~I~ 457 (464)
T PRK12831 393 GTSPNPLISSTTKGLKINKRGCIVADEE--------TGL-TSKEGVFAGGDAVTGAATVILAMGAGKKAAKAID 457 (464)
T ss_pred CCCCChhhhcccCCceECCCCcEEECCC--------CCc-cCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 99999876543 233444433 111 4579999999998654 34688889998887764
No 56
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.96 E-value=3.8e-28 Score=255.81 Aligned_cols=265 Identities=22% Similarity=0.266 Sum_probs=178.6
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK 90 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (454)
..++|+||||||||++||..|++.|++|+|||+.+.+||.+.+.
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~------------------------------------ 581 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNI------------------------------------ 581 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeee------------------------------------
Confidence 46899999999999999999999999999999999999987631
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575 91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT 170 (454)
Q Consensus 91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt 170 (454)
.+.|....++..+..+.....++. +++++.| .++.. +.. ...||+|||||
T Consensus 582 ---IP~~Rlp~evL~~die~l~~~GVe--~~~gt~V-di~le-------------------~L~-----~~gYDaVILAT 631 (1019)
T PRK09853 582 ---IPQFRIPAELIQHDIEFVKAHGVK--FEFGCSP-DLTVE-------------------QLK-----NEGYDYVVVAI 631 (1019)
T ss_pred ---cccccccHHHHHHHHHHHHHcCCE--EEeCcee-EEEhh-------------------hhe-----eccCCEEEECc
Confidence 011111234455555566667876 8888766 22211 111 34599999999
Q ss_pred CCCCCCCCCCCCCcCCccceeEEeecC-----C-CCCCCCCCeEEEEcCCCCHHHHHHHHhhh-c-CeEEEecccCC-cC
Q 044575 171 GHYSYPRLPSIKGMDKWKRKQMHSHIY-----R-VPEPFRNEVVVVVGNSLSGQDISMELVEV-A-KEVHLSAKSLN-IS 241 (454)
Q Consensus 171 G~~~~p~~p~i~G~~~~~~~~~~~~~~-----~-~~~~~~~k~vvVVG~G~sg~e~A~~l~~~-~-~~V~l~~r~~~-~~ 241 (454)
|. ..|..+.+||.+. .++++..+ . ......+++|+|||||++|+|+|..+.+. + ++|+++.|+.. ..
T Consensus 632 GA-~~~~~l~IpG~~~---gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~M 707 (1019)
T PRK09853 632 GA-DKNGGLKLEGGNQ---NVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEM 707 (1019)
T ss_pred CC-CCCCCCCCCCccC---CceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccc
Confidence 94 2355566777542 12222211 1 11123589999999999999999998887 3 58999998763 22
Q ss_pred c----cchhhhccCCCeEEcCceeEEecCCcEE-------------------EeCCCEEeeceEEEccCcccCCcCCCCC
Q 044575 242 E----GLSKVISKHNNLHLHPQIDCLREDGRVT-------------------FVDGCWVTADTILYCTGYSYSFPFLDTK 298 (454)
Q Consensus 242 ~----~~~~~l~~~~~i~~~~~v~~v~~~~~v~-------------------~~dG~~i~~D~vI~atG~~~~~~~l~~~ 298 (454)
+ .+.+.+.+.++++....+.++..++.+. ..++.++++|.||+|+|.+|+.+++...
T Consensus 708 PA~~eEle~AleeGVe~~~~~~p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~~ 787 (1019)
T PRK09853 708 PAWREEYEEALEDGVEFKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKAN 787 (1019)
T ss_pred cccHHHHHHHHHcCCEEEeCCceEEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHHhc
Confidence 2 2333334445666666666664333221 1223468899999999999998876532
Q ss_pred -------CceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCCC
Q 044575 299 -------GIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKRT 355 (454)
Q Consensus 299 -------g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~~ 355 (454)
|.+.+|+... ++.|++|++||+..++ +...|..||+.+|++|.+...
T Consensus 788 GL~ld~~G~I~VDetlq----------Ts~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 788 GIPLDKKGWPVVDANGE----------TSLTNVYMIGDVQRGPSTIVAAIADARRAADAILSREG 842 (1019)
T ss_pred CccccCCCCEEeCCCcc----------cCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhcC
Confidence 3333433222 4569999999998544 457899999999999988654
No 57
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.96 E-value=1.4e-27 Score=240.57 Aligned_cols=263 Identities=22% Similarity=0.250 Sum_probs=180.6
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK 90 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (454)
..++|+||||||+|+++|..|++.|++|+|||+.+.+||.+.+.
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~g------------------------------------ 182 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYG------------------------------------ 182 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeecc------------------------------------
Confidence 45899999999999999999999999999999999998876531
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575 91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT 170 (454)
Q Consensus 91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt 170 (454)
.+.+....++..+..+.++++++. +++++.|.. .+++.+. ...||+||+||
T Consensus 183 ---ip~~~~~~~~~~~~~~~l~~~gv~--~~~~~~v~~------------------~v~~~~~------~~~~d~vvlAt 233 (457)
T PRK11749 183 ---IPEFRLPKDIVDREVERLLKLGVE--IRTNTEVGR------------------DITLDEL------RAGYDAVFIGT 233 (457)
T ss_pred ---CCCccCCHHHHHHHHHHHHHcCCE--EEeCCEECC------------------ccCHHHH------HhhCCEEEEcc
Confidence 011112246667777777777776 777766521 0111111 25799999999
Q ss_pred CCCCCCCCCCCCCcCCccceeEEeecC----C----CCCCCCCCeEEEEcCCCCHHHHHHHHhhhcC-eEEEecccCCc-
Q 044575 171 GHYSYPRLPSIKGMDKWKRKQMHSHIY----R----VPEPFRNEVVVVVGNSLSGQDISMELVEVAK-EVHLSAKSLNI- 240 (454)
Q Consensus 171 G~~~~p~~p~i~G~~~~~~~~~~~~~~----~----~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~-~V~l~~r~~~~- 240 (454)
|. ..|+.+.+||.+. .+ +++...+ . ......+++|+|||+|.+|+|+|..+.+.|. +|+++.|++..
T Consensus 234 Ga-~~~~~~~i~G~~~-~g-v~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~ 310 (457)
T PRK11749 234 GA-GLPRFLGIPGENL-GG-VYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREE 310 (457)
T ss_pred CC-CCCCCCCCCCccC-CC-cEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCccc
Confidence 94 2477777888653 11 2222221 0 0122368999999999999999999999987 89999986542
Q ss_pred Ccc----chhhhccCCCeEEcCceeEEecCC----cEEEe-------------------CCCEEeeceEEEccCcccCCc
Q 044575 241 SEG----LSKVISKHNNLHLHPQIDCLREDG----RVTFV-------------------DGCWVTADTILYCTGYSYSFP 293 (454)
Q Consensus 241 ~~~----~~~~l~~~~~i~~~~~v~~v~~~~----~v~~~-------------------dG~~i~~D~vI~atG~~~~~~ 293 (454)
.+. +..+....++++.+..+.++..++ .|++. +++++++|.||+|+|++|+..
T Consensus 311 ~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 390 (457)
T PRK11749 311 MPASEEEVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPL 390 (457)
T ss_pred CCCCHHHHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCch
Confidence 111 122223345788888888886443 15442 223688999999999999966
Q ss_pred CCC--------CCCceeeCC-CCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHc
Q 044575 294 FLD--------TKGIVVVDD-DRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLS 351 (454)
Q Consensus 294 ~l~--------~~g~i~v~~-~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~ 351 (454)
++. +.|.+.+|+ ... ++.|++|++||+..+. ....|..||+.+|.+|.
T Consensus 391 l~~~~~gl~~~~~g~i~vd~~~~~----------Ts~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~I~ 448 (457)
T PRK11749 391 ILSTTPGLELNRWGTIIADDETGR----------TSLPGVFAGGDIVTGAATVVWAVGDGKDAAEAIH 448 (457)
T ss_pred hhccccCccCCCCCCEEeCCCCCc----------cCCCCEEEeCCcCCCchHHHHHHHHHHHHHHHHH
Confidence 543 234455554 222 4569999999998653 45688999999987764
No 58
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.95 E-value=4.9e-27 Score=251.35 Aligned_cols=279 Identities=18% Similarity=0.169 Sum_probs=185.4
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK 90 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (454)
..++|+|||||||||+||..|++.|++|+|||+.+.+||...|.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yG------------------------------------ 348 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYG------------------------------------ 348 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEcc------------------------------------
Confidence 46899999999999999999999999999999999999997742
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575 91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT 170 (454)
Q Consensus 91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt 170 (454)
.+.|....++.+...+..+..|+. +++|+.|. ..+++.+.. ...||+|||||
T Consensus 349 ---IP~~rlp~~vi~~~i~~l~~~Gv~--f~~n~~vG------------------~dit~~~l~-----~~~yDAV~LAt 400 (944)
T PRK12779 349 ---IPEFRLPNQLIDDVVEKIKLLGGR--FVKNFVVG------------------KTATLEDLK-----AAGFWKIFVGT 400 (944)
T ss_pred ---CCCCcChHHHHHHHHHHHHhhcCe--EEEeEEec------------------cEEeHHHhc-----cccCCEEEEeC
Confidence 122333356666666777777877 77776542 224443322 34699999999
Q ss_pred CCCCCCCCCCCCCcCCccceeEEeecC--------------C-CCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEec
Q 044575 171 GHYSYPRLPSIKGMDKWKRKQMHSHIY--------------R-VPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSA 235 (454)
Q Consensus 171 G~~~~p~~p~i~G~~~~~~~~~~~~~~--------------~-~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~ 235 (454)
|. ..|+.+++||.+. .+ +..+.++ . ......||+|+|||||.+|+|+|..+.+.|++|+++.
T Consensus 401 GA-~~pr~l~IpG~dl-~G-V~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~ 477 (944)
T PRK12779 401 GA-GLPTFMNVPGEHL-LG-VMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVY 477 (944)
T ss_pred CC-CCCCcCCCCCCcC-cC-cEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE
Confidence 94 3688888998653 11 1111111 0 0112368999999999999999999999999999999
Q ss_pred ccCCc-Ccc----chhhhccCCCeEEcCceeEEecC--C-cE---EE-----------------eCCC--EEeeceEEEc
Q 044575 236 KSLNI-SEG----LSKVISKHNNLHLHPQIDCLRED--G-RV---TF-----------------VDGC--WVTADTILYC 285 (454)
Q Consensus 236 r~~~~-~~~----~~~~l~~~~~i~~~~~v~~v~~~--~-~v---~~-----------------~dG~--~i~~D~vI~a 285 (454)
|++.. .+. +.....+.++++....+.++..+ + .| .+ .+|+ ++++|.||+|
T Consensus 478 rr~~~~mpa~~~e~~~a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~A 557 (944)
T PRK12779 478 RRTKSEMPARVEELHHALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMA 557 (944)
T ss_pred ecCcccccccHHHHHHHHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEc
Confidence 87532 111 22223344566666666666432 1 11 11 1233 4889999999
Q ss_pred cCcccCCcCCCCCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCCCCC
Q 044575 286 TGYSYSFPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKRTLP 357 (454)
Q Consensus 286 tG~~~~~~~l~~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~~lp 357 (454)
+|+.|+..+......+.+++.......++.+. ++.|++|++||+..+. ....|..+++.+|..|...+.+.
T Consensus 558 iG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~-Ts~pgVFAaGD~~~G~~~vv~Ai~eGr~AA~~I~~~L~~~ 629 (944)
T PRK12779 558 LGNTANPIMKDAEPGLKTNKWGTIEVEKGSQR-TSIKGVYSGGDAARGGSTAIRAAGDGQAAAKEIVGEIPFT 629 (944)
T ss_pred CCcCCChhhhhcccCceECCCCCEEECCCCCc-cCCCCEEEEEcCCCChHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999864322211222232211111111122 4579999999999765 34688899999999987765543
No 59
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.95 E-value=2.1e-27 Score=233.24 Aligned_cols=268 Identities=18% Similarity=0.253 Sum_probs=179.7
Q ss_pred cEEEECcChHHHHHHHHHHHc---CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575 14 NVCVIGAGPSGLVAARELRKE---GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK 90 (454)
Q Consensus 14 ~VvIIGaG~aGl~aA~~l~~~---g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (454)
+|||||||+||+.+|++|+++ +.+|+|||+++.. .|... .|. +
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~------------------~~~~~---~~~-------~------ 46 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT------------------PYSGM---LPG-------M------ 46 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC------------------cccch---hhH-------H------
Confidence 599999999999999999754 6899999997642 11110 000 0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575 91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT 170 (454)
Q Consensus 91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt 170 (454)
...-...+++...+.++++++++. +. ..+|++|+.. ..+|.+.++. ++.||+|||||
T Consensus 47 ---~~g~~~~~~~~~~~~~~~~~~gv~--~~-~~~v~~id~~------------~~~V~~~~g~-----~~~yD~LviAt 103 (364)
T TIGR03169 47 ---IAGHYSLDEIRIDLRRLARQAGAR--FV-IAEATGIDPD------------RRKVLLANRP-----PLSYDVLSLDV 103 (364)
T ss_pred ---HheeCCHHHhcccHHHHHHhcCCE--EE-EEEEEEEecc------------cCEEEECCCC-----cccccEEEEcc
Confidence 000012245555666777777776 44 4589999876 3467777654 68999999999
Q ss_pred CCCCCCCCCCCCCcCCcccee--E-Eeec----CCC-CC-CCCCCeEEEEcCCCCHHHHHHHHhhh----c--CeEEEec
Q 044575 171 GHYSYPRLPSIKGMDKWKRKQ--M-HSHI----YRV-PE-PFRNEVVVVVGNSLSGQDISMELVEV----A--KEVHLSA 235 (454)
Q Consensus 171 G~~~~p~~p~i~G~~~~~~~~--~-~~~~----~~~-~~-~~~~k~vvVVG~G~sg~e~A~~l~~~----~--~~V~l~~ 235 (454)
| +.|..|.+||..+..... + +... +.. .+ ...+++|+|||+|.+|+|+|..|++. + .+|+++
T Consensus 104 G--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li- 180 (364)
T TIGR03169 104 G--STTPLSGVEGAADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI- 180 (364)
T ss_pred C--CCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-
Confidence 9 899999999854311000 0 0000 000 00 12357999999999999999999863 2 489999
Q ss_pred ccCCcCccc--------hhhhcc-CCCeEEcCceeEEecCCcEEEeCCCEEeeceEEEccCcccCCcC------CCCCCc
Q 044575 236 KSLNISEGL--------SKVISK-HNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSYSFPF------LDTKGI 300 (454)
Q Consensus 236 r~~~~~~~~--------~~~l~~-~~~i~~~~~v~~v~~~~~v~~~dG~~i~~D~vI~atG~~~~~~~------l~~~g~ 300 (454)
+.+.+.+.+ .+.+.+ .++++.+..++++..+ .|.+.+|+++++|.||+|+|.+|+..+ +++.|.
T Consensus 181 ~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~gl~~~~~g~ 259 (364)
T TIGR03169 181 AGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPDG-ALILADGRTLPADAILWATGARAPPWLAESGLPLDEDGF 259 (364)
T ss_pred eCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCC-eEEeCCCCEEecCEEEEccCCChhhHHHHcCCCcCCCCe
Confidence 445443222 222322 3578888889998655 588899999999999999999998322 123456
Q ss_pred eeeCCCCcccccCcccCCCCCCCceEeccccccc------chhHHHHHHHHHHHHHc
Q 044575 301 VVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI------GFPFFESQAKWIAQLLS 351 (454)
Q Consensus 301 i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~------~~~~a~~qa~~~a~~i~ 351 (454)
+.+|+..+. .+.|++|++||+.... ....|..||+.+|++|.
T Consensus 260 i~vd~~l~~---------~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~ 307 (364)
T TIGR03169 260 LRVDPTLQS---------LSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLR 307 (364)
T ss_pred EEECCcccc---------CCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHH
Confidence 666664431 2469999999998432 23478899999988774
No 60
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.95 E-value=9.6e-27 Score=226.90 Aligned_cols=278 Identities=24% Similarity=0.251 Sum_probs=180.5
Q ss_pred cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCC
Q 044575 10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLK 89 (454)
Q Consensus 10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (454)
...++|+|||||++|+++|..|++.|++|++||+.+.+||.+.... ..+.
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~--------------------------~~~~---- 65 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGI--------------------------PEFR---- 65 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecC--------------------------cccc----
Confidence 3467999999999999999999999999999999998888765210 0000
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEc--CCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEE
Q 044575 90 KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGML--DCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVV 167 (454)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vV 167 (454)
.+.+.+...+.++.++ ++. ++.++.|..++.. .... .|.......+ ...+.||+||
T Consensus 66 --------~~~~~~~~~~~~l~~~-~i~--~~~~~~v~~~~~~~~~~~~--------~~~~~~~~~~---~~~~~~d~lv 123 (352)
T PRK12770 66 --------IPIERVREGVKELEEA-GVV--FHTRTKVCCGEPLHEEEGD--------EFVERIVSLE---ELVKKYDAVL 123 (352)
T ss_pred --------cCHHHHHHHHHHHHhC-CeE--EecCcEEeecccccccccc--------ccccccCCHH---HHHhhCCEEE
Confidence 1224455555555443 665 7778777655431 1100 2222111111 1136899999
Q ss_pred EccCCCC-CCCCCCCCCcCCccceeEEe---------ecC--C---CCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCe-E
Q 044575 168 VATGHYS-YPRLPSIKGMDKWKRKQMHS---------HIY--R---VPEPFRNEVVVVVGNSLSGQDISMELVEVAKE-V 231 (454)
Q Consensus 168 iAtG~~~-~p~~p~i~G~~~~~~~~~~~---------~~~--~---~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~-V 231 (454)
|||| + .|..|++||.+... +..+ ..+ . ....+.+++|+|||+|.+|+|+|..+...+.+ |
T Consensus 124 iAtG--s~~~~~~~ipg~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~V 199 (352)
T PRK12770 124 IATG--TWKSRKLGIPGEDLPG--VYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKV 199 (352)
T ss_pred EEeC--CCCCCcCCCCCccccC--ceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeE
Confidence 9999 5 57888888875321 1111 101 1 11134579999999999999999999988886 9
Q ss_pred EEecccCCcCcc----chhhhc-cCCCeEEcCceeEEecCCc---EEEe------------------C--CCEEeeceEE
Q 044575 232 HLSAKSLNISEG----LSKVIS-KHNNLHLHPQIDCLREDGR---VTFV------------------D--GCWVTADTIL 283 (454)
Q Consensus 232 ~l~~r~~~~~~~----~~~~l~-~~~~i~~~~~v~~v~~~~~---v~~~------------------d--G~~i~~D~vI 283 (454)
+++.|++..... ..+.+. ..++++.+..+.++..++. |.+. + ++.+++|.||
T Consensus 200 tvi~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi 279 (352)
T PRK12770 200 YLAYRRTINEAPAGKYEIERLIARGVEFLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVV 279 (352)
T ss_pred EEEeecchhhCCCCHHHHHHHHHcCCEEeeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEE
Confidence 999987643211 112233 3356777777777764432 2221 2 2468899999
Q ss_pred EccCcccCCcCCCC--------CCceeeCCCCcccccCcccCCCCCCCceEecccccc-cchhHHHHHHHHHHHHHcCC
Q 044575 284 YCTGYSYSFPFLDT--------KGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKL-IGFPFFESQAKWIAQLLSGK 353 (454)
Q Consensus 284 ~atG~~~~~~~l~~--------~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~-~~~~~a~~qa~~~a~~i~g~ 353 (454)
+|+|++|+..+..+ .+.+.+|+... +..|++|++||+... .....|..||+.+|.++...
T Consensus 280 ~a~G~~p~~~l~~~~~g~~~~~~g~i~vd~~~~----------t~~~~vyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~ 348 (352)
T PRK12770 280 FAIGEIPTPPFAKECLGIELNRKGEIVVDEKHM----------TSREGVFAAGDVVTGPSKIGKAIKSGLRAAQSIHEW 348 (352)
T ss_pred ECcccCCCchhhhcccCceecCCCcEeeCCCcc----------cCCCCEEEEcccccCcchHHHHHHHHHHHHHHHHHH
Confidence 99999999776443 23344444322 346999999998863 34578899999999877543
No 61
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.95 E-value=9e-27 Score=247.71 Aligned_cols=265 Identities=23% Similarity=0.265 Sum_probs=177.2
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK 90 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (454)
..++|+||||||||++||..|++.|++|+|||+.+.+||.+.+.
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g------------------------------------ 473 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYG------------------------------------ 473 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec------------------------------------
Confidence 46899999999999999999999999999999988899887642
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575 91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT 170 (454)
Q Consensus 91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt 170 (454)
.+.|....++.....+...++++. +++++.|. ..+++.+.. ...||+|||||
T Consensus 474 ---ip~~rlp~~~~~~~~~~l~~~gv~--~~~~~~v~------------------~~v~~~~l~-----~~~ydavvlAt 525 (752)
T PRK12778 474 ---IPEFRLPKKIVDVEIENLKKLGVK--FETDVIVG------------------KTITIEELE-----EEGFKGIFIAS 525 (752)
T ss_pred ---CCCCCCCHHHHHHHHHHHHHCCCE--EECCCEEC------------------CcCCHHHHh-----hcCCCEEEEeC
Confidence 011111134455555556667776 77776541 112222221 35699999999
Q ss_pred CCCCCCCCCCCCCcCCccceeEEeecC----------C---CCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCe-EEEecc
Q 044575 171 GHYSYPRLPSIKGMDKWKRKQMHSHIY----------R---VPEPFRNEVVVVVGNSLSGQDISMELVEVAKE-VHLSAK 236 (454)
Q Consensus 171 G~~~~p~~p~i~G~~~~~~~~~~~~~~----------~---~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~-V~l~~r 236 (454)
|. ..|+.|++||.+... ++++.++ . ......+++|+|||+|.+|+|+|..+.+.|.+ |+++.|
T Consensus 526 Ga-~~~~~l~ipG~~~~g--V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r 602 (752)
T PRK12778 526 GA-GLPNFMNIPGENSNG--VMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYR 602 (752)
T ss_pred CC-CCCCCCCCCCCCCCC--cEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeee
Confidence 94 268888899865311 2222211 1 11224689999999999999999999999887 999998
Q ss_pred cCCc--Cccc---hhhhccCCCeEEcCceeEEec--CCc---EEEe---------C---------CC--EEeeceEEEcc
Q 044575 237 SLNI--SEGL---SKVISKHNNLHLHPQIDCLRE--DGR---VTFV---------D---------GC--WVTADTILYCT 286 (454)
Q Consensus 237 ~~~~--~~~~---~~~l~~~~~i~~~~~v~~v~~--~~~---v~~~---------d---------G~--~i~~D~vI~at 286 (454)
++.. .... .....+.++++....+.++.. ++. |.+. + |+ ++++|.||+|+
T Consensus 603 ~~~~~~~~~~~e~~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~ 682 (752)
T PRK12778 603 RSEEEMPARLEEVKHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSV 682 (752)
T ss_pred cCcccCCCCHHHHHHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECc
Confidence 7642 1111 122233346666666666642 221 2331 1 22 48899999999
Q ss_pred CcccCCcCCCC--------CCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcC
Q 044575 287 GYSYSFPFLDT--------KGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSG 352 (454)
Q Consensus 287 G~~~~~~~l~~--------~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g 352 (454)
|+.|+..++.. .|.+.+|+... ++.|++|++||+..++ ....|..|++.+|..|..
T Consensus 683 G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~----------Ts~~gVfA~GD~~~g~~~vv~Av~~G~~AA~~I~~ 747 (752)
T PRK12778 683 GVSPNPLVPSSIPGLELNRKGTIVVDEEMQ----------SSIPGIYAGGDIVRGGATVILAMGDGKRAAAAIDE 747 (752)
T ss_pred CCCCCccccccccCceECCCCCEEeCCCCC----------CCCCCEEEeCCccCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999765432 23344443322 5679999999998654 457888999999887743
No 62
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.95 E-value=4.5e-26 Score=241.46 Aligned_cols=265 Identities=20% Similarity=0.225 Sum_probs=172.0
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK 90 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (454)
..++|+||||||||++||..|++.|++|+|||+++.+||...+. .
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~-------------------I---------------- 580 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI-------------------I---------------- 580 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeec-------------------c----------------
Confidence 35799999999999999999999999999999999999987531 0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575 91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT 170 (454)
Q Consensus 91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt 170 (454)
+.|....+...+..+....+++. +++++.. ..++ .... ...||+|||||
T Consensus 581 ----P~~rlp~e~l~~~ie~l~~~GVe--~~~g~~~------------------d~~v--e~l~-----~~gYDaVIIAT 629 (1012)
T TIGR03315 581 ----PEFRISAESIQKDIELVKFHGVE--FKYGCSP------------------DLTV--AELK-----NQGYKYVILAI 629 (1012)
T ss_pred ----cccCCCHHHHHHHHHHHHhcCcE--EEEeccc------------------ceEh--hhhh-----cccccEEEECC
Confidence 01111134444444455556665 5554210 1111 1111 34699999999
Q ss_pred CCCCCCCCCCCCCcCCccceeEEeecC----CC--CCCCCCCeEEEEcCCCCHHHHHHHHhhh-c-CeEEEecccCC-cC
Q 044575 171 GHYSYPRLPSIKGMDKWKRKQMHSHIY----RV--PEPFRNEVVVVVGNSLSGQDISMELVEV-A-KEVHLSAKSLN-IS 241 (454)
Q Consensus 171 G~~~~p~~p~i~G~~~~~~~~~~~~~~----~~--~~~~~~k~vvVVG~G~sg~e~A~~l~~~-~-~~V~l~~r~~~-~~ 241 (454)
|. ..+..+.++|... .++.+..+ .. .....+++|+|||||.+|+|+|..+.+. | ++|+++.|+.. ..
T Consensus 630 GA-~~~~~l~I~G~~~---~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~M 705 (1012)
T TIGR03315 630 GA-WKHGPLRLEGGGE---RVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYM 705 (1012)
T ss_pred CC-CCCCCCCcCCCCc---ceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCcccc
Confidence 94 2344556777432 12222111 11 1124689999999999999999998886 6 58999998763 22
Q ss_pred ----ccchhhhccCCCeEEcCceeEEecCCcEE-----------------EeCCC--EEeeceEEEccCcccCCcCCCC-
Q 044575 242 ----EGLSKVISKHNNLHLHPQIDCLREDGRVT-----------------FVDGC--WVTADTILYCTGYSYSFPFLDT- 297 (454)
Q Consensus 242 ----~~~~~~l~~~~~i~~~~~v~~v~~~~~v~-----------------~~dG~--~i~~D~vI~atG~~~~~~~l~~- 297 (454)
..+.+.+.+.+++.....+.++.. +.++ ..+|+ ++++|.||+|+|..|+..++..
T Consensus 706 pa~~eEl~~aleeGVe~~~~~~p~~I~~-g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~ 784 (1012)
T TIGR03315 706 PASREELEEALEDGVDFKELLSPESFED-GTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKN 784 (1012)
T ss_pred ccCHHHHHHHHHcCCEEEeCCceEEEEC-CeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHHHHhc
Confidence 223333444455665555555542 2121 12344 5789999999999999877542
Q ss_pred ------CCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHHcCCCC
Q 044575 298 ------KGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLLSGKRT 355 (454)
Q Consensus 298 ------~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i~g~~~ 355 (454)
.|.+.+|+.. .. ++.|++|++||+..++ ....|..||+.+|..|.++..
T Consensus 785 GL~ld~~G~I~VD~~~--------~~-Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~~~ 840 (1012)
T TIGR03315 785 GIPLDEYGWPVVNQAT--------GE-TNITNVFVIGDANRGPATIVEAIADGRKAANAILSREG 840 (1012)
T ss_pred CcccCCCCCEEeCCCC--------Cc-cCCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhcccc
Confidence 3444444321 11 4569999999997543 457899999999999987654
No 63
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.94 E-value=3.5e-26 Score=238.60 Aligned_cols=262 Identities=22% Similarity=0.270 Sum_probs=174.6
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK 90 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (454)
..++|+||||||+|+++|..|++.|++|+|||+.+.+||.+.+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~g------------------------------------ 235 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYG------------------------------------ 235 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeec------------------------------------
Confidence 35799999999999999999999999999999999999988642
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575 91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT 170 (454)
Q Consensus 91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt 170 (454)
.+.|....++.++..+.+.++++. +++++.+. ++ ++..+. ...||+|||||
T Consensus 236 ---ip~~~~~~~~~~~~~~~l~~~Gv~--i~~~~~v~-~d-----------------v~~~~~------~~~~DaVilAt 286 (652)
T PRK12814 236 ---IPRFRLPESVIDADIAPLRAMGAE--FRFNTVFG-RD-----------------ITLEEL------QKEFDAVLLAV 286 (652)
T ss_pred ---CCCCCCCHHHHHHHHHHHHHcCCE--EEeCCccc-Cc-----------------cCHHHH------HhhcCEEEEEc
Confidence 011112245555555566677776 67776441 11 111111 22499999999
Q ss_pred CCCCC-CCCCCCCCcCCccceeEEeecC-----CCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcC-eEEEecccCCc-Cc
Q 044575 171 GHYSY-PRLPSIKGMDKWKRKQMHSHIY-----RVPEPFRNEVVVVVGNSLSGQDISMELVEVAK-EVHLSAKSLNI-SE 242 (454)
Q Consensus 171 G~~~~-p~~p~i~G~~~~~~~~~~~~~~-----~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~-~V~l~~r~~~~-~~ 242 (454)
| +. +..+.+||.+. .+ ++....+ .......+++|+|||+|.+|+|+|..+.+.|. +|+++.|++.. .+
T Consensus 287 G--a~~~~~~~ipG~~~-~g-v~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mp 362 (652)
T PRK12814 287 G--AQKASKMGIPGEEL-PG-VISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMP 362 (652)
T ss_pred C--CCCCCCCCCCCcCc-CC-cEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCC
Confidence 9 54 35667888653 22 2222111 11234578999999999999999999999875 69999987642 22
Q ss_pred ----cchhhhccCCCeEEcCceeEEecC-CcE-----EEe---------------CCC--EEeeceEEEccCcccCCcCC
Q 044575 243 ----GLSKVISKHNNLHLHPQIDCLRED-GRV-----TFV---------------DGC--WVTADTILYCTGYSYSFPFL 295 (454)
Q Consensus 243 ----~~~~~l~~~~~i~~~~~v~~v~~~-~~v-----~~~---------------dG~--~i~~D~vI~atG~~~~~~~l 295 (454)
.+.+.+.+.++++....+.++..+ +.+ .+. +|+ ++++|.||+|+|+.|+..++
T Consensus 363 a~~~ei~~a~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll 442 (652)
T PRK12814 363 ANRAEIEEALAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIA 442 (652)
T ss_pred CCHHHHHHHHHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcccc
Confidence 233334455677777777666532 211 111 233 47899999999999998876
Q ss_pred CC-------CCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHH
Q 044575 296 DT-------KGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLL 350 (454)
Q Consensus 296 ~~-------~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i 350 (454)
.. .|.+.+|+.. +. ++.|++|++||+...+ ....|..||+.+|.+|
T Consensus 443 ~~~gl~~~~~G~I~vd~~~--------~~-Ts~pgVfA~GDv~~g~~~v~~Ai~~G~~AA~~I 496 (652)
T PRK12814 443 EAAGIGTSRNGTVKVDPET--------LQ-TSVAGVFAGGDCVTGADIAINAVEQGKRAAHAI 496 (652)
T ss_pred cccCccccCCCcEeeCCCC--------Cc-CCCCCEEEcCCcCCCchHHHHHHHHHHHHHHHH
Confidence 53 2344444321 11 4579999999998654 3467888888877654
No 64
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.94 E-value=3.1e-25 Score=224.06 Aligned_cols=269 Identities=23% Similarity=0.313 Sum_probs=171.9
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK 90 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (454)
..++|+||||||||+++|..|++.|++|+|||+.+.+||.+.+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g------------------------------------ 185 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYG------------------------------------ 185 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeec------------------------------------
Confidence 45799999999999999999999999999999999999887631
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575 91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT 170 (454)
Q Consensus 91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt 170 (454)
.+.|....++.....+.+.++++. +++++.|.. +. .... ....||+||+||
T Consensus 186 ---ip~~~~~~~~~~~~~~~~~~~gv~--~~~~~~v~~-~~-----------------~~~~------~~~~~d~vvlAt 236 (471)
T PRK12810 186 ---IPDFKLEKEVIDRRIELMEAEGIE--FRTNVEVGK-DI-----------------TAEE------LLAEYDAVFLGT 236 (471)
T ss_pred ---CCcccCCHHHHHHHHHHHHhCCcE--EEeCCEECC-cC-----------------CHHH------HHhhCCEEEEec
Confidence 011112244555555666777876 777776521 10 0000 024699999999
Q ss_pred CCCCC-CCCCCCCCcCCccceeEEee-------------cCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcC-eEEEec
Q 044575 171 GHYSY-PRLPSIKGMDKWKRKQMHSH-------------IYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAK-EVHLSA 235 (454)
Q Consensus 171 G~~~~-p~~p~i~G~~~~~~~~~~~~-------------~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~-~V~l~~ 235 (454)
| +. |+.+.+||.+. .+ +.+.. .+.......+++|+|||+|++|+|+|..+.+.+. +|+++.
T Consensus 237 G--a~~~~~l~ipG~~~-~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~ 312 (471)
T PRK12810 237 G--AYKPRDLGIPGRDL-DG-VHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRD 312 (471)
T ss_pred C--CCCCCcCCCCCccC-CC-cEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEcc
Confidence 9 54 77778888653 11 11111 0111123468999999999999999998888875 799766
Q ss_pred ccCCcCcc---------------chhhhccCCCeEEcCceeEEec-CCcE---EE-----eCC---------CEEeeceE
Q 044575 236 KSLNISEG---------------LSKVISKHNNLHLHPQIDCLRE-DGRV---TF-----VDG---------CWVTADTI 282 (454)
Q Consensus 236 r~~~~~~~---------------~~~~l~~~~~i~~~~~v~~v~~-~~~v---~~-----~dG---------~~i~~D~v 282 (454)
+.+..... +.......++++....+.++.. ++.| .+ .+| .++++|.|
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~V 392 (471)
T PRK12810 313 IMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLV 392 (471)
T ss_pred ccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEE
Confidence 54432111 1112233457888888888863 3322 22 122 35889999
Q ss_pred EEccCcccCCc-CCCCCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHH
Q 044575 283 LYCTGYSYSFP-FLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLL 350 (454)
Q Consensus 283 I~atG~~~~~~-~l~~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i 350 (454)
|+|+|.+|+.. ++...+ +.+++.......+..+. ++.|++|++||+..+. ....|..||+.+|..+
T Consensus 393 I~A~G~~p~~~~l~~~~g-l~~~~~g~i~vd~~~~~-Ts~~gVfa~GD~~~g~~~~~~Av~~G~~AA~~i 460 (471)
T PRK12810 393 LLAMGFTGPEAGLLAQFG-VELDERGRVAAPDNAYQ-TSNPKVFAAGDMRRGQSLVVWAIAEGRQAARAI 460 (471)
T ss_pred EECcCcCCCchhhccccC-cccCCCCCEEeCCCccc-CCCCCEEEccccCCCchhHHHHHHHHHHHHHHH
Confidence 99999999853 543211 22232211111101111 4579999999998654 3467888888887655
No 65
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.93 E-value=3.3e-25 Score=239.44 Aligned_cols=269 Identities=19% Similarity=0.196 Sum_probs=176.5
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK 90 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (454)
..++|+|||||||||+||..|++.|++|+|||+.+.+||...+.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~g------------------------------------ 472 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYG------------------------------------ 472 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeecc------------------------------------
Confidence 35799999999999999999999999999999999998876531
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575 91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT 170 (454)
Q Consensus 91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt 170 (454)
.+.|....++.....+...++++. +++++.|. . . ++..... ....||+|||||
T Consensus 473 ---ip~~rl~~e~~~~~~~~l~~~Gv~--~~~~~~vg-~---------------~--~~~~~l~----~~~~yDaViIAT 525 (1006)
T PRK12775 473 ---IPSFRLPRDIIDREVQRLVDIGVK--IETNKVIG-K---------------T--FTVPQLM----NDKGFDAVFLGV 525 (1006)
T ss_pred ---CCccCCCHHHHHHHHHHHHHCCCE--EEeCCccC-C---------------c--cCHHHHh----hccCCCEEEEec
Confidence 112222356666666677778877 77775431 1 1 1111110 023599999999
Q ss_pred CCCCCCCCCCCCCcCCccceeEEeecC--------------CCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcC-eEEEec
Q 044575 171 GHYSYPRLPSIKGMDKWKRKQMHSHIY--------------RVPEPFRNEVVVVVGNSLSGQDISMELVEVAK-EVHLSA 235 (454)
Q Consensus 171 G~~~~p~~p~i~G~~~~~~~~~~~~~~--------------~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~-~V~l~~ 235 (454)
|. ..|+.+++||.+. .+ +++..++ .......||+|+|||||++|+|+|..+.+.|. +|+++.
T Consensus 526 Ga-~~pr~l~IpG~~l-~g-V~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~ 602 (1006)
T PRK12775 526 GA-GAPTFLGIPGEFA-GQ-VYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVY 602 (1006)
T ss_pred CC-CCCCCCCCCCcCC-CC-cEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEe
Confidence 94 2588888998643 11 2222211 11223478999999999999999999999876 588888
Q ss_pred ccCCcC-c-c---chhhhccCCCeEEcCceeEEec--CCc---EEEe-----------------CCC--EEeeceEEEcc
Q 044575 236 KSLNIS-E-G---LSKVISKHNNLHLHPQIDCLRE--DGR---VTFV-----------------DGC--WVTADTILYCT 286 (454)
Q Consensus 236 r~~~~~-~-~---~~~~l~~~~~i~~~~~v~~v~~--~~~---v~~~-----------------dG~--~i~~D~vI~at 286 (454)
|+.... + . +.....+.++++....+.++.. ++. |.+. +|+ ++++|.||+|+
T Consensus 603 rr~~~em~a~~~e~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~Ai 682 (1006)
T PRK12775 603 RRSEAEAPARIEEIRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYAL 682 (1006)
T ss_pred ecCcccCCCCHHHHHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECC
Confidence 765431 1 1 1122233456777777777642 232 2221 222 58899999999
Q ss_pred CcccCCcCCC--------CCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHH
Q 044575 287 GYSYSFPFLD--------TKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLL 350 (454)
Q Consensus 287 G~~~~~~~l~--------~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i 350 (454)
|+.|+..++. +.|.+.+|+..+ .+.+. ++.|++|++||+..++ ....|..+++.+|..|
T Consensus 683 G~~p~~~~~~~~~gl~l~~~G~I~vd~~~v----~~~~~-Ts~pgVFAaGDv~~G~~~vv~Ai~~Gr~AA~~I 750 (1006)
T PRK12775 683 GTKANPIITQSTPGLALNKWGNIAADDGKL----ESTQS-TNLPGVFAGGDIVTGGATVILAMGAGRRAARSI 750 (1006)
T ss_pred CcCCChhhhhccCCcccCCCCcEEeCCCcc----ccCcC-CCCCCEEEecCcCCCccHHHHHHHHHHHHHHHH
Confidence 9999976543 234455443111 11222 4679999999998654 3467888888888654
No 66
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.7e-25 Score=188.86 Aligned_cols=266 Identities=20% Similarity=0.259 Sum_probs=190.5
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC----CCCcccccCCCCCCCCccccccccceecCCccccccCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH----DVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFV 87 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~----~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (454)
..+|+|||+|||+.+||.++++...+.++||--- .+||+.. +....-.|++||-
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLt---------------------TTT~veNfPGFPd- 65 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLT---------------------TTTDVENFPGFPD- 65 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceee---------------------eeeccccCCCCCc-
Confidence 4589999999999999999999999999999521 1233322 1122233444432
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEE
Q 044575 88 LKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVV 167 (454)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vV 167 (454)
-..+.++.+.+++.+.+|+.. | +-..|.+++.... .|++.+... .+.+|.||
T Consensus 66 ---------gi~G~~l~d~mrkqs~r~Gt~--i-~tEtVskv~~ssk----------pF~l~td~~------~v~~~avI 117 (322)
T KOG0404|consen 66 ---------GITGPELMDKMRKQSERFGTE--I-ITETVSKVDLSSK----------PFKLWTDAR------PVTADAVI 117 (322)
T ss_pred ---------ccccHHHHHHHHHHHHhhcce--e-eeeehhhccccCC----------CeEEEecCC------ceeeeeEE
Confidence 235689999999999999987 4 4457888887643 677777543 68999999
Q ss_pred EccCCCCCCCCCCCCCc-CC-ccceeEEeecCCCCCC--CCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcC--
Q 044575 168 VATGHYSYPRLPSIKGM-DK-WKRKQMHSHIYRVPEP--FRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNIS-- 241 (454)
Q Consensus 168 iAtG~~~~p~~p~i~G~-~~-~~~~~~~~~~~~~~~~--~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~-- 241 (454)
+||| +..+...+||. +. |..+.+.++..++... |++|..+|||||-|++|-|..|...+++|++++|++.+.
T Consensus 118 ~atG--AsAkRl~~pg~ge~~fWqrGiSaCAVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRAs 195 (322)
T KOG0404|consen 118 LATG--ASAKRLHLPGEGEGEFWQRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRAS 195 (322)
T ss_pred Eecc--cceeeeecCCCCcchHHhcccchhhcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhHH
Confidence 9999 66666667776 33 8888888888888765 899999999999999999999999999999999999873
Q ss_pred ccchhhhccCCC--eEEcCceeEEecCC----cEEEe---CC--CEEeeceEEEccCcccCCcCCCCCCceeeCCCCccc
Q 044575 242 EGLSKVISKHNN--LHLHPQIDCLREDG----RVTFV---DG--CWVTADTILYCTGYSYSFPFLDTKGIVVVDDDRVGP 310 (454)
Q Consensus 242 ~~~~~~l~~~~~--i~~~~~v~~v~~~~----~v~~~---dG--~~i~~D~vI~atG~~~~~~~l~~~g~i~v~~~~~~~ 310 (454)
..+.+...+..+ ++.+..+.+...++ .+.+. .| +.++++-++++.|-.|++.||+ |.+..|.+....
T Consensus 196 ~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~--gqve~d~~GYi~ 273 (322)
T KOG0404|consen 196 KIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFLK--GQVELDEDGYIV 273 (322)
T ss_pred HHHHHHHhcCCCeEEEechhhhhhccCcccccceEEEecccCcccccccceeEEEecCCchhhHhc--CceeeccCceEE
Confidence 334444444443 44444444443442 22222 23 4588999999999999999987 455555543322
Q ss_pred ccCcccCCCCCCCceEeccccc
Q 044575 311 LYEHTFPPSLAPSLSFVGIPRK 332 (454)
Q Consensus 311 ~~~~~~~~~~~p~l~~iG~~~~ 332 (454)
.-+.... ++.|++|+.||+.-
T Consensus 274 t~pgts~-TsvpG~FAAGDVqD 294 (322)
T KOG0404|consen 274 TRPGTSL-TSVPGVFAAGDVQD 294 (322)
T ss_pred eccCccc-ccccceeeccccch
Confidence 2222222 46799999999873
No 67
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.7e-25 Score=200.75 Aligned_cols=320 Identities=16% Similarity=0.191 Sum_probs=199.6
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeC---C-----CCCcccccCCCCCCCCccccccccceecCCccccccC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQN---H-----DVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYT 82 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~---~-----~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (454)
-++|++|||||.+||+||++++..|.+|.++|-- + .+||+|.+.+|+|.++++....-.-....+ .
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da------~ 91 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDA------R 91 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHH------H
Confidence 3689999999999999999999999999999942 1 278999999999998655543221111111 1
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEE
Q 044575 83 DFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEV 162 (454)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 162 (454)
.|.|... +...-+.+..+.+-.++-....+-.-++.++. ..|...+.-+.+.+ ..++...+.. ++...++
T Consensus 92 kyGW~~~---e~~ikhdW~~l~~sVqnhI~s~NW~yRv~Lre--KkV~Y~NsygeFv~----~h~I~at~~~-gk~~~~t 161 (503)
T KOG4716|consen 92 KYGWNVD---EQKIKHDWNKLVKSVQNHIKSLNWGYRVQLRE--KKVEYINSYGEFVD----PHKIKATNKK-GKERFLT 161 (503)
T ss_pred hhCCCCc---cccccccHHHHHHHHHHHhhhccceEEEEecc--ceeeeeecceeecc----cceEEEecCC-CceEEee
Confidence 1222220 11233456677777777666655432222222 22222222222222 3345554443 3466789
Q ss_pred eCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc--
Q 044575 163 FDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI-- 240 (454)
Q Consensus 163 ~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~-- 240 (454)
++.+||||| .+|+.|+|||..++ .+.|.+.......+| +.+|||+|+.|.|+|..|+.+|-.||+..|+-.+
T Consensus 162 a~~fvIatG--~RPrYp~IpG~~Ey---~ITSDDlFsl~~~PG-kTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~LrG 235 (503)
T KOG4716|consen 162 AENFVIATG--LRPRYPDIPGAKEY---GITSDDLFSLPYEPG-KTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLRG 235 (503)
T ss_pred cceEEEEec--CCCCCCCCCCceee---eecccccccccCCCC-ceEEEccceeeeehhhhHhhcCCCcEEEEEEeeccc
Confidence 999999999 99999999997664 344444433333345 4688999999999999999999999999997654
Q ss_pred -Cccchhhh----ccCC-CeEEc---CceeEEecCC-cEEEe---CCCE--EeeceEEEccCcccCCcCCC-CCCceeeC
Q 044575 241 -SEGLSKVI----SKHN-NLHLH---PQIDCLREDG-RVTFV---DGCW--VTADTILYCTGYSYSFPFLD-TKGIVVVD 304 (454)
Q Consensus 241 -~~~~~~~l----~~~~-~i~~~---~~v~~v~~~~-~v~~~---dG~~--i~~D~vI~atG~~~~~~~l~-~~g~i~v~ 304 (454)
+..+.+.+ .+++ .+... .+|+.+.... .|... .++. -++|.|+||.|+.+.+.-++ +.-.+.+|
T Consensus 236 FDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n 315 (503)
T KOG4716|consen 236 FDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTN 315 (503)
T ss_pred ccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhccccchhhcCCCccceeec
Confidence 23333322 2232 33333 3344443322 22222 2332 34999999999998876544 22334444
Q ss_pred CCCcccccCcccCCCCCCCceEeccccccc--chhHHHHHHHHHHHHHcCC
Q 044575 305 DDRVGPLYEHTFPPSLAPSLSFVGIPRKLI--GFPFFESQAKWIAQLLSGK 353 (454)
Q Consensus 305 ~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~--~~~~a~~qa~~~a~~i~g~ 353 (454)
+..- ..--+-+..++.|.+|++||....- ..|+|.+.+|.+|+.+-+.
T Consensus 316 ~ks~-KI~v~~~e~t~vp~vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf~g 365 (503)
T KOG4716|consen 316 EKSG-KIPVDDEEATNVPYVYAVGDILEDKPELTPVAIQSGRLLARRLFAG 365 (503)
T ss_pred ccCC-ccccChHHhcCCCceEEecceecCCcccchhhhhhchHHHHHHhcC
Confidence 3221 1111222335689999999987542 3489999999999766443
No 68
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.93 E-value=6.6e-25 Score=208.66 Aligned_cols=249 Identities=21% Similarity=0.296 Sum_probs=183.1
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCC--cEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGH--RVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLK 89 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~--~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (454)
.+.++|||+|++|..|+.++++.|. +++++-+...+ .|. +...|+.....
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~------------------pyd--r~~Ls~~~~~~-------- 125 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLL------------------PYD--RARLSKFLLTV-------- 125 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccC------------------ccc--chhcccceeec--------
Confidence 4689999999999999999999985 78888765432 111 11111111100
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEc
Q 044575 90 KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA 169 (454)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViA 169 (454)
.+.+.....++.+..+++ ..+++.|++++.. ..+|.+.+++ .+.|++||||
T Consensus 126 ----------~~~~a~r~~e~Yke~gIe--~~~~t~v~~~D~~------------~K~l~~~~Ge-----~~kys~LilA 176 (478)
T KOG1336|consen 126 ----------GEGLAKRTPEFYKEKGIE--LILGTSVVKADLA------------SKTLVLGNGE-----TLKYSKLIIA 176 (478)
T ss_pred ----------cccccccChhhHhhcCce--EEEcceeEEeecc------------ccEEEeCCCc-----eeecceEEEe
Confidence 011111223355666777 8899999999977 5668888776 8999999999
Q ss_pred cCCCCCCCCCCCCCcCCccceeEEeecCCCCC--------CCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcC
Q 044575 170 TGHYSYPRLPSIKGMDKWKRKQMHSHIYRVPE--------PFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNIS 241 (454)
Q Consensus 170 tG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~--------~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~ 241 (454)
|| +.|+.|++||.+... ++ .+++.+ .-.++.|+|||+|.+|+|+|.+|...+.+||++++.+.+.
T Consensus 177 TG--s~~~~l~~pG~~~~n---v~--~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~ 249 (478)
T KOG1336|consen 177 TG--SSAKTLDIPGVELKN---VF--YLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLL 249 (478)
T ss_pred ec--CccccCCCCCccccc---ee--eeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCccch
Confidence 99 899999999987322 22 222221 1236789999999999999999999999999999998874
Q ss_pred cc---------chhhhccC-CCeEEcCceeEEecC--C---cEEEeCCCEEeeceEEEccCcccCCcCCC------CCCc
Q 044575 242 EG---------LSKVISKH-NNLHLHPQIDCLRED--G---RVTFVDGCWVTADTILYCTGYSYSFPFLD------TKGI 300 (454)
Q Consensus 242 ~~---------~~~~l~~~-~~i~~~~~v~~v~~~--~---~v~~~dG~~i~~D~vI~atG~~~~~~~l~------~~g~ 300 (454)
+. +.+.+++. +++++.+.+.++.++ + .|.+.||+++++|+||+++|.+|+++++. +.|.
T Consensus 250 ~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~~g~~~~~~G~ 329 (478)
T KOG1336|consen 250 PRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLEKGILLDSKGG 329 (478)
T ss_pred hhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccccccccccceecccCC
Confidence 42 22333333 478888988888643 2 57889999999999999999999999876 5678
Q ss_pred eeeCCCCcccccCcccCCCCCCCceEeccccccc
Q 044575 301 VVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI 334 (454)
Q Consensus 301 i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~ 334 (454)
|.||+..+ +..|++|++||+...+
T Consensus 330 i~V~~~f~----------t~~~~VyAiGDva~fp 353 (478)
T KOG1336|consen 330 IKVDEFFQ----------TSVPNVYAIGDVATFP 353 (478)
T ss_pred Eeehhcee----------eccCCcccccceeecc
Confidence 88888766 4579999999988653
No 69
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.93 E-value=9.2e-25 Score=218.90 Aligned_cols=216 Identities=19% Similarity=0.271 Sum_probs=157.1
Q ss_pred HHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEE--eCEEEEccCCCCCCCCCCCCCcC
Q 044575 108 KDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEV--FDAVVVATGHYSYPRLPSIKGMD 185 (454)
Q Consensus 108 ~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~d~vViAtG~~~~p~~p~i~G~~ 185 (454)
+++.+++++. ++++++|++|+.. .++|.+.+..++. ++. ||+|||||| +.|+.|.+||++
T Consensus 51 ~~~~~~~gv~--~~~~~~V~~id~~------------~~~v~~~~~~~~~--~~~~~yd~lIiATG--~~p~~~~i~G~~ 112 (427)
T TIGR03385 51 EVFIKKRGID--VKTNHEVIEVNDE------------RQTVVVRNNKTNE--TYEESYDYLILSPG--ASPIVPNIEGIN 112 (427)
T ss_pred HHHHHhcCCe--EEecCEEEEEECC------------CCEEEEEECCCCC--EEecCCCEEEECCC--CCCCCCCCCCcC
Confidence 4455777877 7789999999865 3445555432122 455 999999999 899999999975
Q ss_pred CccceeEEeecCCCC-------CCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc-Cccch--------hhhc
Q 044575 186 KWKRKQMHSHIYRVP-------EPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI-SEGLS--------KVIS 249 (454)
Q Consensus 186 ~~~~~~~~~~~~~~~-------~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~-~~~~~--------~~l~ 249 (454)
.- ...+....... ....+++|+|||+|.+|+|+|..|++.+.+|+++.+.+.+ .+.+. +.+.
T Consensus 113 ~~--~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~ 190 (427)
T TIGR03385 113 LD--IVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELK 190 (427)
T ss_pred CC--CEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHH
Confidence 21 12222111100 1235689999999999999999999999999999998765 23222 2233
Q ss_pred c-CCCeEEcCceeEEecCCc-EEEeCCCEEeeceEEEccCcccCCcCCC-------CCCceeeCCCCcccccCcccCCCC
Q 044575 250 K-HNNLHLHPQIDCLREDGR-VTFVDGCWVTADTILYCTGYSYSFPFLD-------TKGIVVVDDDRVGPLYEHTFPPSL 320 (454)
Q Consensus 250 ~-~~~i~~~~~v~~v~~~~~-v~~~dG~~i~~D~vI~atG~~~~~~~l~-------~~g~i~v~~~~~~~~~~~~~~~~~ 320 (454)
+ .++++.+..|+++..++. +++.+|+++++|.||+|+|++|+.+++. ++|.+.+|+..+ ++
T Consensus 191 ~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~~----------t~ 260 (427)
T TIGR03385 191 KHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQ----------TS 260 (427)
T ss_pred HcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCCHHHHHhcCcccCCCCCEEECCCcE----------eC
Confidence 3 357888889999976654 3778899999999999999999987754 345677766544 34
Q ss_pred CCCceEecccccc-----------cchhHHHHHHHHHHHHHcCC
Q 044575 321 APSLSFVGIPRKL-----------IGFPFFESQAKWIAQLLSGK 353 (454)
Q Consensus 321 ~p~l~~iG~~~~~-----------~~~~~a~~qa~~~a~~i~g~ 353 (454)
.|++|++||+... +..+.|..||+++|++|.|.
T Consensus 261 ~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g~ 304 (427)
T TIGR03385 261 VPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAGN 304 (427)
T ss_pred CCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcCC
Confidence 6999999998742 23468999999999999986
No 70
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.93 E-value=4.2e-24 Score=215.07 Aligned_cols=266 Identities=21% Similarity=0.293 Sum_probs=176.5
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK 90 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (454)
..++|+||||||+|+++|..|++.|++|+++|+.+.+||.+.+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~g------------------------------------ 183 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFG------------------------------------ 183 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeec------------------------------------
Confidence 45799999999999999999999999999999999999987631
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575 91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT 170 (454)
Q Consensus 91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt 170 (454)
.+.|....++..+..+.++++++. +++++.|..- +...+. ...||+||+||
T Consensus 184 ---ip~~~~~~~~~~~~~~~~~~~Gv~--~~~~~~v~~~------------------~~~~~~------~~~~D~vilAt 234 (467)
T TIGR01318 184 ---IPSFKLDKAVLSRRREIFTAMGIE--FHLNCEVGRD------------------ISLDDL------LEDYDAVFLGV 234 (467)
T ss_pred ---CccccCCHHHHHHHHHHHHHCCCE--EECCCEeCCc------------------cCHHHH------HhcCCEEEEEe
Confidence 011111246666777777888877 7778766210 111111 23699999999
Q ss_pred CCCCCC-CCCCCCCcCCccceeEEeec-----------C---C--CCCCCCCCeEEEEcCCCCHHHHHHHHhhhc-CeEE
Q 044575 171 GHYSYP-RLPSIKGMDKWKRKQMHSHI-----------Y---R--VPEPFRNEVVVVVGNSLSGQDISMELVEVA-KEVH 232 (454)
Q Consensus 171 G~~~~p-~~p~i~G~~~~~~~~~~~~~-----------~---~--~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~-~~V~ 232 (454)
| +.+ ..+++||.+... +.+... . . ......+++|+|||+|.+|+|.|..+.+.| ++||
T Consensus 235 G--a~~~~~~~i~g~~~~g--V~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vt 310 (467)
T TIGR01318 235 G--TYRSMRGGLPGEDAPG--VLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVT 310 (467)
T ss_pred C--CCCCCcCCCCCcCCCC--cEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEE
Confidence 9 554 345677765411 111100 0 0 011246799999999999999999999988 4799
Q ss_pred EecccCCc-Cc----cchhhhccCCCeEEcCceeEEec--CCc---EEEe---------C---------C--CEEeeceE
Q 044575 233 LSAKSLNI-SE----GLSKVISKHNNLHLHPQIDCLRE--DGR---VTFV---------D---------G--CWVTADTI 282 (454)
Q Consensus 233 l~~r~~~~-~~----~~~~~l~~~~~i~~~~~v~~v~~--~~~---v~~~---------d---------G--~~i~~D~v 282 (454)
++.|++.. .+ .+.+...+.++++.+..+.++.. ++. |++. + | .++++|.|
T Consensus 311 vv~r~~~~~~~~~~~e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~V 390 (467)
T TIGR01318 311 CAYRRDEANMPGSRREVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVV 390 (467)
T ss_pred EEEecCcccCCCCHHHHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEE
Confidence 99987653 11 22223334457777877777753 222 2231 1 2 25789999
Q ss_pred EEccCcccCC-cCCCC-------CCceeeCCCCcccccCcccCCCCCCCceEecccccccc-hhHHHHHHHHHHHHHc
Q 044575 283 LYCTGYSYSF-PFLDT-------KGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIG-FPFFESQAKWIAQLLS 351 (454)
Q Consensus 283 I~atG~~~~~-~~l~~-------~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~-~~~a~~qa~~~a~~i~ 351 (454)
|+|+|++|+. .++.. .|.+.+|+. |...+. ++.|++|++||+..+.. ...|..||+.+|.++.
T Consensus 391 i~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~-----~~~~~~-T~~~gVfa~GD~~~~~~~~~~Ai~~G~~aA~~i~ 462 (467)
T TIGR01318 391 IMAFGFQPHAMPWLAGHGITLDSWGRIITGDV-----SYLPYQ-TTNPKIFAGGDAVRGADLVVTAVAEGRQAAQGIL 462 (467)
T ss_pred EECCcCCCCccccccccCccCCCCCCEEeCCc-----cccCcc-CCCCCEEEECCcCCCccHHHHHHHHHHHHHHHHH
Confidence 9999999984 44432 234444421 111122 34699999999986553 3678999999998764
No 71
>PRK13984 putative oxidoreductase; Provisional
Probab=99.93 E-value=2.4e-24 Score=224.43 Aligned_cols=263 Identities=22% Similarity=0.272 Sum_probs=171.4
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK 90 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (454)
..++|+|||+|++|+++|..|++.|++|+|||+.+.+||.+.+.
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~------------------------------------ 325 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYG------------------------------------ 325 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeec------------------------------------
Confidence 46789999999999999999999999999999999998876532
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575 91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT 170 (454)
Q Consensus 91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt 170 (454)
.+.+...+++.....+..+++++. +++++.|.. + +..... ...||+||+||
T Consensus 326 ---i~~~~~~~~~~~~~~~~~~~~gv~--~~~~~~v~~-~-----------------~~~~~~------~~~yD~vilAt 376 (604)
T PRK13984 326 ---IPSYRLPDEALDKDIAFIEALGVK--IHLNTRVGK-D-----------------IPLEEL------REKHDAVFLST 376 (604)
T ss_pred ---CCcccCCHHHHHHHHHHHHHCCcE--EECCCEeCC-c-----------------CCHHHH------HhcCCEEEEEc
Confidence 001111144444445566777776 777776631 0 000111 24699999999
Q ss_pred CCCCCCCCCCCCCcCCccceeEEeecCC---------CC-CCCCCCeEEEEcCCCCHHHHHHHHhhhcC------eEEEe
Q 044575 171 GHYSYPRLPSIKGMDKWKRKQMHSHIYR---------VP-EPFRNEVVVVVGNSLSGQDISMELVEVAK------EVHLS 234 (454)
Q Consensus 171 G~~~~p~~p~i~G~~~~~~~~~~~~~~~---------~~-~~~~~k~vvVVG~G~sg~e~A~~l~~~~~------~V~l~ 234 (454)
|. ..|+.+++||.+... +++...+. .. ....+++|+|||||.+|+|+|..+++.+. +|+++
T Consensus 377 Ga-~~~r~l~i~G~~~~g--v~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~ 453 (604)
T PRK13984 377 GF-TLGRSTRIPGTDHPD--VIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVT 453 (604)
T ss_pred Cc-CCCccCCCCCcCCcC--eEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEe
Confidence 94 236778888875321 12211110 01 11246899999999999999999998753 68886
Q ss_pred cccCC---cCc---cchhhhccCCCeEEcCceeEEec-CC---cEEEe--------CC-----------CEEeeceEEEc
Q 044575 235 AKSLN---ISE---GLSKVISKHNNLHLHPQIDCLRE-DG---RVTFV--------DG-----------CWVTADTILYC 285 (454)
Q Consensus 235 ~r~~~---~~~---~~~~~l~~~~~i~~~~~v~~v~~-~~---~v~~~--------dG-----------~~i~~D~vI~a 285 (454)
..... +.. .+.+...+.++++....+.++.. ++ .|.+. +| .++++|.||+|
T Consensus 454 ~~~r~~~~~~~~~~e~~~~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~a 533 (604)
T PRK13984 454 SLERTFEEMPADMEEIEEGLEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEA 533 (604)
T ss_pred ccccCcccCCCCHHHHHHHHHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEe
Confidence 43211 111 12222334456666665655542 22 12221 12 36889999999
Q ss_pred cCcccCCcCCCC---------CCceeeCCCCcccccCcccCCCCCCCceEecccccccchhHHHHHHHHHHHHHc
Q 044575 286 TGYSYSFPFLDT---------KGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLS 351 (454)
Q Consensus 286 tG~~~~~~~l~~---------~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~~~~a~~qa~~~a~~i~ 351 (454)
+|++|+.++|.. +|.+.+|++.. ++.|++|++||+...+....|..+|+.+|..|.
T Consensus 534 iG~~p~~~~l~~~~~~~l~~~~G~i~vd~~~~----------Ts~~gVfAaGD~~~~~~~v~Ai~~G~~AA~~I~ 598 (604)
T PRK13984 534 IGQAPDYSYLPEELKSKLEFVRGRILTNEYGQ----------TSIPWLFAGGDIVHGPDIIHGVADGYWAAEGID 598 (604)
T ss_pred eCCCCChhhhhhhhccCccccCCeEEeCCCCc----------cCCCCEEEecCcCCchHHHHHHHHHHHHHHHHH
Confidence 999999877642 24455554433 457999999999977666678889999887764
No 72
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.93 E-value=6.6e-24 Score=230.75 Aligned_cols=283 Identities=16% Similarity=0.168 Sum_probs=189.6
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK 90 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (454)
..+||+|||||||||+||.+|++.|++|+|||+++.+||.+.+...
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~---------------------------------- 207 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAE---------------------------------- 207 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeecccc----------------------------------
Confidence 3579999999999999999999999999999999999998763210
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEE-Ee-------ec-CCCeEEE
Q 044575 91 GRDVRRFPGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVK-SK-------EK-KADKVVE 160 (454)
Q Consensus 91 ~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~-~~-------~~-~~~~~~~ 160 (454)
..+. .+..++...+.+.+..+ ++. +..+++|..+..... -..+. .. .+ ..+...+
T Consensus 208 --~~~g-~~~~~~~~~~~~~l~~~~~v~--v~~~t~V~~i~~~~~----------v~~v~~~~~~~~~~~~~~~~~~~~~ 272 (985)
T TIGR01372 208 --TIDG-KPAADWAAATVAELTAMPEVT--LLPRTTAFGYYDHNT----------VGALERVTDHLDAPPKGVPRERLWR 272 (985)
T ss_pred --ccCC-ccHHHHHHHHHHHHhcCCCcE--EEcCCEEEEEecCCe----------EEEEEEeeeccccccCCccccceEE
Confidence 0000 11133322232323333 354 777888888753210 00010 00 00 0011236
Q ss_pred EEeCEEEEccCCCCCCCCCCCCCcCCccceeEEe---ecC-CCCCCCCCCeEEEEcCCCCHHHHHHHHhhhc-CeEEEec
Q 044575 161 EVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHS---HIY-RVPEPFRNEVVVVVGNSLSGQDISMELVEVA-KEVHLSA 235 (454)
Q Consensus 161 ~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~---~~~-~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~-~~V~l~~ 235 (454)
+.||+|||||| +.++.|++||.+. .+. +.. ..+ .......+++|+|||+|++|+|+|..|++.| ..|++++
T Consensus 273 i~a~~VILATG--a~~r~~pipG~~~-pgV-~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~ 348 (985)
T TIGR01372 273 IRAKRVVLATG--AHERPLVFANNDR-PGV-MLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIID 348 (985)
T ss_pred EEcCEEEEcCC--CCCcCCCCCCCCC-CCc-EEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEc
Confidence 88999999999 8889888998654 221 111 111 1122346899999999999999999999999 5688988
Q ss_pred ccCCcCccchhhhccC-CCeEEcCceeEEecCC---cEEEe----CCCEEeeceEEEccCcccCCcCCCCCC-ceeeCCC
Q 044575 236 KSLNISEGLSKVISKH-NNLHLHPQIDCLREDG---RVTFV----DGCWVTADTILYCTGYSYSFPFLDTKG-IVVVDDD 306 (454)
Q Consensus 236 r~~~~~~~~~~~l~~~-~~i~~~~~v~~v~~~~---~v~~~----dG~~i~~D~vI~atG~~~~~~~l~~~g-~i~v~~~ 306 (454)
+.+.+.+.+.+.+.+. ++++.+..+.++..++ .|++. ++++++||.|++++|++|+..++...+ .+..|+.
T Consensus 349 ~~~~~~~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~ 428 (985)
T TIGR01372 349 ARADVSPEARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAA 428 (985)
T ss_pred cCcchhHHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCCeeeccc
Confidence 8776655555555444 5788888888887654 35555 456789999999999999988765433 3333432
Q ss_pred CcccccCcccCCCCCCCceEecccccccchhHHHHHHHHHHHHHc
Q 044575 307 RVGPLYEHTFPPSLAPSLSFVGIPRKLIGFPFFESQAKWIAQLLS 351 (454)
Q Consensus 307 ~~~~~~~~~~~~~~~p~l~~iG~~~~~~~~~~a~~qa~~~a~~i~ 351 (454)
.. .+ .+.++.|++|++|++........|..+++.+|..++
T Consensus 429 ~~--~~---~~~t~v~gVyaaGD~~g~~~~~~A~~eG~~Aa~~i~ 468 (985)
T TIGR01372 429 IA--AF---LPGDAVQGCILAGAANGLFGLAAALADGAAAGAAAA 468 (985)
T ss_pred cC--ce---ecCCCCCCeEEeeccCCccCHHHHHHHHHHHHHHHH
Confidence 21 11 112446999999999877777788899998887664
No 73
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.92 E-value=5.9e-24 Score=222.83 Aligned_cols=268 Identities=20% Similarity=0.282 Sum_probs=173.9
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK 90 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (454)
..++|+|||||||||++|..|++.|++|+|||+.+.+||.+.+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~g------------------------------------ 369 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFG------------------------------------ 369 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeec------------------------------------
Confidence 45899999999999999999999999999999999999987642
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575 91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT 170 (454)
Q Consensus 91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt 170 (454)
.+.|....++.....+.++++++. +++++.|.. . ++.... ...||+||+||
T Consensus 370 ---ip~~~l~~~~~~~~~~~~~~~Gv~--~~~~~~v~~----------------~--i~~~~~------~~~~DavilAt 420 (654)
T PRK12769 370 ---IPAFKLDKSLLARRREIFSAMGIE--FELNCEVGK----------------D--ISLESL------LEDYDAVFVGV 420 (654)
T ss_pred ---CCCccCCHHHHHHHHHHHHHCCeE--EECCCEeCC----------------c--CCHHHH------HhcCCEEEEeC
Confidence 011111245555556666777876 777776521 0 111111 23699999999
Q ss_pred CCCCCCCCCCCCCcCCccceeEEee--------------cCCC-C-CCCCCCeEEEEcCCCCHHHHHHHHhhhcC-eEEE
Q 044575 171 GHYSYPRLPSIKGMDKWKRKQMHSH--------------IYRV-P-EPFRNEVVVVVGNSLSGQDISMELVEVAK-EVHL 233 (454)
Q Consensus 171 G~~~~p~~p~i~G~~~~~~~~~~~~--------------~~~~-~-~~~~~k~vvVVG~G~sg~e~A~~l~~~~~-~V~l 233 (454)
|+ ..+..+.+||.+. .|. +... .+.. + ....+++|+|||+|.+|+|+|..+.+.|. +|++
T Consensus 421 Ga-~~~~~l~i~g~~~-~Gv-~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~ 497 (654)
T PRK12769 421 GT-YRSMKAGLPNEDA-PGV-YDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTC 497 (654)
T ss_pred CC-CCCCCCCCCCCCC-CCe-EEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEE
Confidence 95 2344556677543 111 1100 0000 1 12468999999999999999999888875 7999
Q ss_pred ecccCCc-Ccc----chhhhccCCCeEEcCceeEEec--CCc---EEEe---------C---------CC--EEeeceEE
Q 044575 234 SAKSLNI-SEG----LSKVISKHNNLHLHPQIDCLRE--DGR---VTFV---------D---------GC--WVTADTIL 283 (454)
Q Consensus 234 ~~r~~~~-~~~----~~~~l~~~~~i~~~~~v~~v~~--~~~---v~~~---------d---------G~--~i~~D~vI 283 (454)
+.|++.. .+. +.....+.++++....+.++.. ++. |.+. + |+ ++++|.||
T Consensus 498 i~~~~~~~~~~~~~e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi 577 (654)
T PRK12769 498 AYRRDEANMPGSKKEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVI 577 (654)
T ss_pred eEecCCCCCCCCHHHHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEE
Confidence 9987653 221 2222233456777777777742 232 2331 1 22 58899999
Q ss_pred EccCcccCC-cCCCC-------CCceeeCCCCcccccCcccCCCCCCCceEecccccccc-hhHHHHHHHHHHHHHcC
Q 044575 284 YCTGYSYSF-PFLDT-------KGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIG-FPFFESQAKWIAQLLSG 352 (454)
Q Consensus 284 ~atG~~~~~-~~l~~-------~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~-~~~a~~qa~~~a~~i~g 352 (454)
+|+|+.|+. .++.. +|.+.+|+.. +.+..++.|++|++||+..++. ...|..||+.+|..|..
T Consensus 578 ~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~------~~~~~Ts~~gVfAaGD~~~g~~~vv~Ai~~Gr~AA~~I~~ 649 (654)
T PRK12769 578 MAFGFNPHGMPWLESHGVTVDKWGRIIADVES------QYRYQTSNPKIFAGGDAVRGADLVVTAMAEGRHAAQGIID 649 (654)
T ss_pred ECccCCCCccccccccCCcCCCCCCEEeCCCc------ccCcccCCCCEEEcCCcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 999999984 34432 2333333210 0111245799999999986654 46889999999987753
No 74
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.91 E-value=3.9e-23 Score=215.67 Aligned_cols=268 Identities=18% Similarity=0.237 Sum_probs=175.0
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK 90 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (454)
..++|+||||||+||++|..|++.|++|+|||+.+.+||.|.+.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~g------------------------------------ 352 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFG------------------------------------ 352 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeecc------------------------------------
Confidence 46899999999999999999999999999999999999998752
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575 91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT 170 (454)
Q Consensus 91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt 170 (454)
.+.|....++.+...+.+..+++. ++++++|.. . ++..+. ...||+||+||
T Consensus 353 ---ip~~~l~~~~~~~~~~~~~~~Gv~--~~~~~~v~~---~---------------~~~~~l------~~~~DaV~lat 403 (639)
T PRK12809 353 ---IPPFKLDKTVLSQRREIFTAMGID--FHLNCEIGR---D---------------ITFSDL------TSEYDAVFIGV 403 (639)
T ss_pred ---CCcccCCHHHHHHHHHHHHHCCeE--EEcCCccCC---c---------------CCHHHH------HhcCCEEEEeC
Confidence 011111145556566677777876 777776521 0 111111 23699999999
Q ss_pred CCCCCCCCCCCCCcCCccceeEEe-----------ecCCC-----CCCCCCCeEEEEcCCCCHHHHHHHHhhhc-CeEEE
Q 044575 171 GHYSYPRLPSIKGMDKWKRKQMHS-----------HIYRV-----PEPFRNEVVVVVGNSLSGQDISMELVEVA-KEVHL 233 (454)
Q Consensus 171 G~~~~p~~p~i~G~~~~~~~~~~~-----------~~~~~-----~~~~~~k~vvVVG~G~sg~e~A~~l~~~~-~~V~l 233 (454)
|+ ..+..+.+||.+. .+ +++. ..... .....+|+|+|||+|.+|+|.|..+.+.| ++||+
T Consensus 404 Ga-~~~~~~~i~g~~~-~g-v~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~ 480 (639)
T PRK12809 404 GT-YGMMRADLPHEDA-PG-VIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTC 480 (639)
T ss_pred CC-CCCCCCCCCCCcc-CC-cEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEE
Confidence 95 2344556777543 11 1110 00000 12346899999999999999999988887 58999
Q ss_pred ecccCCc-Ccc----chhhhccCCCeEEcCceeEEec--CCcE---EE---e------C---------CC--EEeeceEE
Q 044575 234 SAKSLNI-SEG----LSKVISKHNNLHLHPQIDCLRE--DGRV---TF---V------D---------GC--WVTADTIL 283 (454)
Q Consensus 234 ~~r~~~~-~~~----~~~~l~~~~~i~~~~~v~~v~~--~~~v---~~---~------d---------G~--~i~~D~vI 283 (454)
+.|++.. .+. +.....+.++++....+.++.. ++.| .+ . + |+ ++++|.||
T Consensus 481 v~rr~~~~~~~~~~e~~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi 560 (639)
T PRK12809 481 AYRRDEVSMPGSRKEVVNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLI 560 (639)
T ss_pred eeecCcccCCCCHHHHHHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEE
Confidence 9987644 121 2222234457777777777752 2222 11 1 1 22 57899999
Q ss_pred EccCcccCC-cCCCC-------CCceeeCCCCcccccCcccCCCCCCCceEecccccccc-hhHHHHHHHHHHHHHcC
Q 044575 284 YCTGYSYSF-PFLDT-------KGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIG-FPFFESQAKWIAQLLSG 352 (454)
Q Consensus 284 ~atG~~~~~-~~l~~-------~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~-~~~a~~qa~~~a~~i~g 352 (454)
+|+|++|+. .++.. .|.+.+|+.. ...+. ++.|++|++||+..++. ...|..||+.+|+.|..
T Consensus 561 ~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~-----~~~~~-Ts~~gVfA~GD~~~g~~~vv~Ai~~Gr~AA~~i~~ 632 (639)
T PRK12809 561 MAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVG-----YLPTQ-THLKKVFAGGDAVHGADLVVTAMAAGRQAARDMLT 632 (639)
T ss_pred ECcCCCCCccccccccCcccCCCCCEEeCCCc-----ccCcc-cCCCCEEEcCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 999999874 44432 2334443211 01112 45799999999986654 36788999999877653
No 75
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.91 E-value=6.6e-23 Score=207.18 Aligned_cols=268 Identities=23% Similarity=0.265 Sum_probs=165.7
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
.++|+|||||++|+++|..|++.|++|+|||+.+.+||...+.
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~g------------------------------------- 185 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYG------------------------------------- 185 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeecc-------------------------------------
Confidence 4799999999999999999999999999999999888876531
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG 171 (454)
.+.|....++.....+.++.+++. +++++.|.. + +... . ....||+||+|||
T Consensus 186 --ip~~~~~~~~~~~~~~~~~~~Gv~--~~~~~~v~~-~-----------------~~~~-~-----~~~~~d~VilAtG 237 (485)
T TIGR01317 186 --IPNMKLDKAIVDRRIDLLSAEGID--FVTNTEIGV-D-----------------ISAD-E-----LKEQFDAVVLAGG 237 (485)
T ss_pred --CCCccCCHHHHHHHHHHHHhCCCE--EECCCEeCC-c-----------------cCHH-H-----HHhhCCEEEEccC
Confidence 011111234555555566667876 777776631 1 0000 0 1346999999999
Q ss_pred CCCC-CCCCCCCCcCCccceeEEeec--------CC-------CCCCCCCCeEEEEcCCCCHHHHHHHHhhhc-CeEEEe
Q 044575 172 HYSY-PRLPSIKGMDKWKRKQMHSHI--------YR-------VPEPFRNEVVVVVGNSLSGQDISMELVEVA-KEVHLS 234 (454)
Q Consensus 172 ~~~~-p~~p~i~G~~~~~~~~~~~~~--------~~-------~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~-~~V~l~ 234 (454)
+. |..+.+||.+. .+. ..... .. ......+|+|+|||+|.+|+|+|..+.+.+ ++|+++
T Consensus 238 --a~~~~~l~i~G~~~-~gV-~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv 313 (485)
T TIGR01317 238 --ATKPRDLPIPGREL-KGI-HYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQF 313 (485)
T ss_pred --CCCCCcCCCCCcCC-CCc-EeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEE
Confidence 55 78888888653 211 11100 00 011246899999999999999988777765 579999
Q ss_pred cccCCcCcc---------c------hhhhcc----CC--CeEEcCceeEEecC--Cc---EEE--------eCC------
Q 044575 235 AKSLNISEG---------L------SKVISK----HN--NLHLHPQIDCLRED--GR---VTF--------VDG------ 274 (454)
Q Consensus 235 ~r~~~~~~~---------~------~~~l~~----~~--~i~~~~~v~~v~~~--~~---v~~--------~dG------ 274 (454)
++.+..... + ...+.+ .+ .++....+.++..+ +. |.+ .+|
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~ 393 (485)
T TIGR01317 314 EIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVE 393 (485)
T ss_pred EecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCcccee
Confidence 877654211 1 011111 11 12334455555432 21 221 123
Q ss_pred ---C--EEeeceEEEccCcc-cCCcCCCCCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHH
Q 044575 275 ---C--WVTADTILYCTGYS-YSFPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIA 347 (454)
Q Consensus 275 ---~--~i~~D~vI~atG~~-~~~~~l~~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a 347 (454)
+ ++++|.||+|+|.. |+.+++...| +..+............. ++.|++|++||+..+. ....|..||+.+|
T Consensus 394 ~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~g-l~~~~~G~i~~~~~~~~-Ts~~gVfAaGD~~~g~~~~~~Av~~G~~AA 471 (485)
T TIGR01317 394 IPGSEEVFEADLVLLAMGFVGPEQILLDDFG-VKKTRRGNISAGYDDYS-TSIPGVFAAGDCRRGQSLIVWAINEGRKAA 471 (485)
T ss_pred cCCceEEEECCEEEEccCcCCCccccccccC-cccCCCCCEEecCCCce-ECCCCEEEeeccCCCcHHHHHHHHHHHHHH
Confidence 2 58899999999996 8877765322 22222211111111112 4579999999998654 3457888888887
Q ss_pred HHH
Q 044575 348 QLL 350 (454)
Q Consensus 348 ~~i 350 (454)
..+
T Consensus 472 ~~i 474 (485)
T TIGR01317 472 AAV 474 (485)
T ss_pred HHH
Confidence 654
No 76
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.9e-23 Score=189.45 Aligned_cols=264 Identities=19% Similarity=0.228 Sum_probs=199.1
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK 90 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (454)
..+||+||||||||-+||.+.+++|.+.-++- +++||+-.-+- ....|
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQvldT~------------------------~IENf------ 257 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQVLDTM------------------------GIENF------ 257 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCeecccc------------------------chhhe------
Confidence 35999999999999999999999999877764 35888755221 11000
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575 91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT 170 (454)
Q Consensus 91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt 170 (454)
-...+..+.++..-++.-.++|.+. +..-.+.+++.+.... .+ -..|++.++. .+.++.|||||
T Consensus 258 --Isv~~teGpkl~~ale~Hv~~Y~vD--imn~qra~~l~~a~~~------~~-l~ev~l~nGa-----vLkaktvIlst 321 (520)
T COG3634 258 --ISVPETEGPKLAAALEAHVKQYDVD--VMNLQRASKLEPAAVE------GG-LIEVELANGA-----VLKARTVILAT 321 (520)
T ss_pred --eccccccchHHHHHHHHHHhhcCch--hhhhhhhhcceecCCC------Cc-cEEEEecCCc-----eeccceEEEec
Confidence 0112234567888888888888877 5445566777664321 11 6789998886 88999999999
Q ss_pred CCCCCCCCCCCCCcCCccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc--Cccchhhh
Q 044575 171 GHYSYPRLPSIKGMDKWKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI--SEGLSKVI 248 (454)
Q Consensus 171 G~~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~--~~~~~~~l 248 (454)
| ++.+-.++||.++|..+....|..++...|+||+|+|||||+||+|.|..|+.....||+++-.+.+ +.-+.+.+
T Consensus 322 G--ArWRn~nvPGE~e~rnKGVayCPHCDGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkAD~VLq~kl 399 (520)
T COG3634 322 G--ARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKADAVLQDKL 399 (520)
T ss_pred C--cchhcCCCCchHHHhhCCeeeCCCCCCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhhhHHHHHHHH
Confidence 9 7888888999999988888888889999999999999999999999999999999999999877766 22233333
Q ss_pred cc--CCCeEEcCceeEEecCC----cEEEeC---CCE--EeeceEEEccCcccCCcCCC------CCCceeeCCCCcccc
Q 044575 249 SK--HNNLHLHPQIDCLREDG----RVTFVD---GCW--VTADTILYCTGYSYSFPFLD------TKGIVVVDDDRVGPL 311 (454)
Q Consensus 249 ~~--~~~i~~~~~v~~v~~~~----~v~~~d---G~~--i~~D~vI~atG~~~~~~~l~------~~g~i~v~~~~~~~~ 311 (454)
.. ++.++.+...+++..++ .+.+.| |++ ++-+-|++-.|-.||+.||. +.|-|.+|...-
T Consensus 400 ~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~vel~~rGEIivD~~g~--- 476 (520)
T COG3634 400 RSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGAVELNRRGEIIVDARGE--- 476 (520)
T ss_pred hcCCCcEEEecceeeEEecCCceecceEEEeccCCceeEEEeeeeEEEEecccChhHhhchhhcCcCccEEEecCCC---
Confidence 33 24677888888888774 244443 443 45677999999999999975 456677776554
Q ss_pred cCcccCCCCCCCceEeccccccc
Q 044575 312 YEHTFPPSLAPSLSFVGIPRKLI 334 (454)
Q Consensus 312 ~~~~~~~~~~p~l~~iG~~~~~~ 334 (454)
++.|++|+.|++...+
T Consensus 477 -------TsvpGvFAAGD~T~~~ 492 (520)
T COG3634 477 -------TNVPGVFAAGDCTTVP 492 (520)
T ss_pred -------cCCCceeecCcccCCc
Confidence 5679999999998653
No 77
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.91 E-value=2.2e-24 Score=207.19 Aligned_cols=216 Identities=20% Similarity=0.272 Sum_probs=129.3
Q ss_pred CCcEEEECcChHHHHHHHHHHHcC-CcEEEEeeCCCCCcccccCCCCCCCCcccccccc-ceecCCccccccCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEG-HRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYAS-LRLTSPREIMGYTDFPFVLK 89 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g-~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 89 (454)
.+|+++||.||++|+.|..|.+.+ .++..||+++ ...|+-.-..+...+..+.... .....|..-++|-.|-....
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~--~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~ 79 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRP--SFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHG 79 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-S--S--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCC--CCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcC
Confidence 479999999999999999999886 8999999876 4456643322322222222222 12222322222211110000
Q ss_pred C----CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCE
Q 044575 90 K----GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDA 165 (454)
Q Consensus 90 ~----~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~ 165 (454)
. -.....+|++.++.+|+++.+++++.. ++++++|++|+...+.. .. .|.|++.+. ++...++.+++
T Consensus 80 rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~--v~~~~~V~~I~~~~~~~-----~~-~~~V~~~~~-~g~~~~~~ar~ 150 (341)
T PF13434_consen 80 RLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQ--VRYGSEVTSIEPDDDGD-----ED-LFRVTTRDS-DGDGETYRARN 150 (341)
T ss_dssp -HHHHHHH--SS-BHHHHHHHHHHHHCCGTTT--EEESEEEEEEEEEEETT-----EE-EEEEEEEET-TS-EEEEEESE
T ss_pred ChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCc--eEECCEEEEEEEecCCC-----cc-EEEEEEeec-CCCeeEEEeCe
Confidence 0 001245689999999999999998854 89999999999886431 01 599999763 35566899999
Q ss_pred EEEccCCCCCCCCCCCCCcCCccceeEEeecCCCC--CCCCCCeEEEEcCCCCHHHHHHHHhhhcC--eEEEecccCCc
Q 044575 166 VVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVP--EPFRNEVVVVVGNSLSGQDISMELVEVAK--EVHLSAKSLNI 240 (454)
Q Consensus 166 vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~--~~~~~k~vvVVG~G~sg~e~A~~l~~~~~--~V~l~~r~~~~ 240 (454)
|||||| ..|.+|..-........++|+.+|... ...++++|+|||||.||.|++..|.+.+. +|+|+.|++.+
T Consensus 151 vVla~G--~~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~ 227 (341)
T PF13434_consen 151 VVLATG--GQPRIPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGF 227 (341)
T ss_dssp EEE------EE---GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-
T ss_pred EEECcC--CCCCCCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCcc
Confidence 999999 899998532211123679999887432 35677999999999999999999999865 89999999876
No 78
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.90 E-value=1.3e-22 Score=202.13 Aligned_cols=161 Identities=22% Similarity=0.272 Sum_probs=110.5
Q ss_pred CCCcEEEECcChHHHHHHHHHHH--cCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRK--EGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVL 88 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~--~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (454)
..++|+||||||||++||..|++ .|++|+|||+.+.+||.+.+.-
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gv--------------------------------- 71 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGV--------------------------------- 71 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeecc---------------------------------
Confidence 45789999999999999999987 6999999999999999877420
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEE
Q 044575 89 KKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVV 168 (454)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVi 168 (454)
.+.++....+...+.++....++. ++.|..|- ..+++.+. ...||+|||
T Consensus 72 -----aP~~~~~k~v~~~~~~~~~~~~v~--~~~nv~vg------------------~dvtl~~L------~~~yDaVIl 120 (491)
T PLN02852 72 -----APDHPETKNVTNQFSRVATDDRVS--FFGNVTLG------------------RDVSLSEL------RDLYHVVVL 120 (491)
T ss_pred -----CCCcchhHHHHHHHHHHHHHCCeE--EEcCEEEC------------------ccccHHHH------hhhCCEEEE
Confidence 122233355666666766665554 44454441 11222221 236999999
Q ss_pred ccCCCCCC-CCCCCCCcCCccceeEEeecC----------CC--CCCCCCCeEEEEcCCCCHHHHHHHHhhh--------
Q 044575 169 ATGHYSYP-RLPSIKGMDKWKRKQMHSHIY----------RV--PEPFRNEVVVVVGNSLSGQDISMELVEV-------- 227 (454)
Q Consensus 169 AtG~~~~p-~~p~i~G~~~~~~~~~~~~~~----------~~--~~~~~~k~vvVVG~G~sg~e~A~~l~~~-------- 227 (454)
||| +.+ +.+.+||.+.- + ++...++ .. .....+++|+|||+|++|+|+|..|.+.
T Consensus 121 AtG--a~~~~~l~IpG~d~~-g-V~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~td 196 (491)
T PLN02852 121 AYG--AESDRRLGIPGEDLP-G-VLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTD 196 (491)
T ss_pred ecC--CCCCCCCCCCCCCCC-C-eEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCcccccccc
Confidence 999 554 66778886531 1 1222111 00 0123589999999999999999998764
Q ss_pred -------------cCeEEEecccCC
Q 044575 228 -------------AKEVHLSAKSLN 239 (454)
Q Consensus 228 -------------~~~V~l~~r~~~ 239 (454)
.++|+++.|+..
T Consensus 197 i~~~~l~~l~~~~~~~V~iv~RRg~ 221 (491)
T PLN02852 197 IAEHALEALRGSSVRKVYLVGRRGP 221 (491)
T ss_pred ccHHHHHHHhhCCCCEEEEEEcCCh
Confidence 357999999875
No 79
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.90 E-value=9.9e-23 Score=210.38 Aligned_cols=262 Identities=24% Similarity=0.295 Sum_probs=171.0
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK 90 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (454)
..++|+||||||+||++|..|++.|++|++||+.+.+||.+.+.
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~g------------------------------------ 179 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYG------------------------------------ 179 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec------------------------------------
Confidence 45799999999999999999999999999999999999987642
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEE-EEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEc
Q 044575 91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRV-EYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA 169 (454)
Q Consensus 91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V-~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViA 169 (454)
.+.|.-..++.+.-.+.+.++++. +.+++.+ .++... . . ...||+||+|
T Consensus 180 ---ip~~~~~~~~~~~~l~~~~~~Gv~--~~~~~~~~~~~~~~------------~-------~------~~~~D~Vi~A 229 (564)
T PRK12771 180 ---IPAYRLPREVLDAEIQRILDLGVE--VRLGVRVGEDITLE------------Q-------L------EGEFDAVFVA 229 (564)
T ss_pred ---CCCccCCHHHHHHHHHHHHHCCCE--EEeCCEECCcCCHH------------H-------H------HhhCCEEEEe
Confidence 011111134444444556667765 6666654 222110 0 0 1248999999
Q ss_pred cCCCCCCCCCCCCCcCCccceeEEeecC-----CCCCCCCCCeEEEEcCCCCHHHHHHHHhhhc-CeEEEecccCCc---
Q 044575 170 TGHYSYPRLPSIKGMDKWKRKQMHSHIY-----RVPEPFRNEVVVVVGNSLSGQDISMELVEVA-KEVHLSAKSLNI--- 240 (454)
Q Consensus 170 tG~~~~p~~p~i~G~~~~~~~~~~~~~~-----~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~-~~V~l~~r~~~~--- 240 (454)
||.. .+..+.++|.+. .+. .+...+ .......+++|+|||+|.+|+|.+..+.+.+ ++|+++.|.+..
T Consensus 230 tG~~-~~~~~~i~g~~~-~gv-~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~ 306 (564)
T PRK12771 230 IGAQ-LGKRLPIPGEDA-AGV-LDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMP 306 (564)
T ss_pred eCCC-CCCcCCCCCCcc-CCc-EEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCC
Confidence 9942 233445676432 221 111111 1113446899999999999999999888887 779999887642
Q ss_pred --CccchhhhccCCCeEEcCceeEEecCC--c--E---EE------e-------CC--CEEeeceEEEccCcccCCcCCC
Q 044575 241 --SEGLSKVISKHNNLHLHPQIDCLREDG--R--V---TF------V-------DG--CWVTADTILYCTGYSYSFPFLD 296 (454)
Q Consensus 241 --~~~~~~~l~~~~~i~~~~~v~~v~~~~--~--v---~~------~-------dG--~~i~~D~vI~atG~~~~~~~l~ 296 (454)
...+.+.....++++....+.++..++ . + .+ . +| .++++|.||+|+|..|+.+++.
T Consensus 307 ~~~~~~~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~ 386 (564)
T PRK12771 307 AHDEEIEEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLE 386 (564)
T ss_pred CCHHHHHHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhh
Confidence 112223333445777777788875432 1 1 11 1 22 2688999999999999987776
Q ss_pred C-------CCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHHHH
Q 044575 297 T-------KGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQLL 350 (454)
Q Consensus 297 ~-------~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~~i 350 (454)
. .|.+.+|+.. +. ++.|++|++||+..++ ....|..||+.+|..|
T Consensus 387 ~~~gl~~~~G~i~vd~~~--------~~-ts~~~Vfa~GD~~~g~~~v~~Av~~G~~aA~~i 439 (564)
T PRK12771 387 SVPGVEVGRGVVQVDPNF--------MM-TGRPGVFAGGDMVPGPRTVTTAIGHGKKAARNI 439 (564)
T ss_pred hccCcccCCCCEEeCCCC--------cc-CCCCCEEeccCcCCCchHHHHHHHHHHHHHHHH
Confidence 3 2344444321 12 4579999999998644 4467888888887655
No 80
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.89 E-value=1.7e-22 Score=200.84 Aligned_cols=274 Identities=20% Similarity=0.250 Sum_probs=194.8
Q ss_pred CcEEEECcChHHHHHHHHHHHc---CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCC
Q 044575 13 KNVCVIGAGPSGLVAARELRKE---GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLK 89 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~---g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (454)
.+++|||.|.+|..+..++++. -++|++|-..+++ -|...+...- +
T Consensus 4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~------------------nY~Ri~Ls~v--------l----- 52 (793)
T COG1251 4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRP------------------NYNRILLSSV--------L----- 52 (793)
T ss_pred eeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCc------------------cccceeeccc--------c-----
Confidence 5799999999999999999984 4699999887754 1221111100 0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEc
Q 044575 90 KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA 169 (454)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViA 169 (454)
+.--+.+++.---.++.++.++. ++.+.+|+.|++. ..+|++..+. .+.||+||+|
T Consensus 53 -----~~~~~~edi~l~~~dwy~~~~i~--L~~~~~v~~idr~------------~k~V~t~~g~-----~~~YDkLilA 108 (793)
T COG1251 53 -----AGEKTAEDISLNRNDWYEENGIT--LYTGEKVIQIDRA------------NKVVTTDAGR-----TVSYDKLIIA 108 (793)
T ss_pred -----CCCccHHHHhccchhhHHHcCcE--EEcCCeeEEeccC------------cceEEccCCc-----EeecceeEEe
Confidence 00012345555556677888887 8899999999987 5678887776 8899999999
Q ss_pred cCCCCCCCCCCCCCcCCccceeEEeecCCCC-----CCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc----
Q 044575 170 TGHYSYPRLPSIKGMDKWKRKQMHSHIYRVP-----EPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI---- 240 (454)
Q Consensus 170 tG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~-----~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~---- 240 (454)
|| |.|++|++||.+.+.-... ..+.+. .....++.+|||||.-|+|.|..|.+.|-+|++++-.+.+
T Consensus 109 TG--S~pfi~PiPG~~~~~v~~~--R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQ 184 (793)
T COG1251 109 TG--SYPFILPIPGSDLPGVFVY--RTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQ 184 (793)
T ss_pred cC--ccccccCCCCCCCCCeeEE--ecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHHHHh
Confidence 99 9999999999876442222 121111 0112355799999999999999999999999999988776
Q ss_pred -Ccc----chhhhccC-CCeEEcCceeEEecCC---cEEEeCCCEEeeceEEEccCcccCCcCCCC-----CCceeeCCC
Q 044575 241 -SEG----LSKVISKH-NNLHLHPQIDCLREDG---RVTFVDGCWVTADTILYCTGYSYSFPFLDT-----KGIVVVDDD 306 (454)
Q Consensus 241 -~~~----~~~~l~~~-~~i~~~~~v~~v~~~~---~v~~~dG~~i~~D~vI~atG~~~~~~~l~~-----~g~i~v~~~ 306 (454)
++. +...+.+. .+++++...+++...+ .+.|+||+.+++|.||+|+|++||..+-.. +-.|.+|+.
T Consensus 185 LD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~~aGlavnrGIvvnd~ 264 (793)
T COG1251 185 LDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPNDELAKEAGLAVNRGIVVNDY 264 (793)
T ss_pred hhhHHHHHHHHHHHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEecccccccHhHHhcCcCcCCCeeeccc
Confidence 111 22223333 3677777766665332 589999999999999999999999876321 224566776
Q ss_pred CcccccCcccCCCCCCCceEeccccccc--ch---hHHHHHHHHHHHHHcCCCC
Q 044575 307 RVGPLYEHTFPPSLAPSLSFVGIPRKLI--GF---PFFESQAKWIAQLLSGKRT 355 (454)
Q Consensus 307 ~~~~~~~~~~~~~~~p~l~~iG~~~~~~--~~---~~a~~qa~~~a~~i~g~~~ 355 (454)
.+ +++|++|++|.+.... .+ --+-.||+.+|.+++|...
T Consensus 265 mq----------TsdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~~~ 308 (793)
T COG1251 265 MQ----------TSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGGEA 308 (793)
T ss_pred cc----------ccCCCeeehhhHHHhcCccceehhHHHHHHHHHHHHhccCcc
Confidence 66 6789999999887321 11 1344689999999988754
No 81
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.86 E-value=6.6e-20 Score=171.27 Aligned_cols=323 Identities=17% Similarity=0.222 Sum_probs=196.7
Q ss_pred ccCCCcEEEECcChHHHHHHHHHHHcC-CcEEEEeeCCCCCcccccCCCCCCCCccccccc-cceecCCccccccCCCCC
Q 044575 9 CAQSKNVCVIGAGPSGLVAARELRKEG-HRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYA-SLRLTSPREIMGYTDFPF 86 (454)
Q Consensus 9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g-~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 86 (454)
|++.+|++.||-||+.|+.|..|.+.+ .+...+||.+. -.|+-....+...+..+... -.....|..-++|-+|-.
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~--F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~ 79 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPD--FSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLH 79 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCC--CCcCCCcccCCccccccchhhhccccCCCCchHHHHHHH
Confidence 445689999999999999999998875 78999999764 46765544444322222222 222233333333321111
Q ss_pred CCCC----CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEE--EEEeecCCCeEEE
Q 044575 87 VLKK----GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWV--VKSKEKKADKVVE 160 (454)
Q Consensus 87 ~~~~----~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~ 160 (454)
.... -.....++++.|+.+|+++.+.++ +.++|+++|.+|...+.+. ... +.+.++. +
T Consensus 80 ~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l---~~~rfg~~V~~i~~~~~d~--------~~~~~~~t~~~~-----~ 143 (436)
T COG3486 80 EHGRLYEFLNYETFHIPRREYNDYCQWAASQL---PSLRFGEEVTDISSLDGDA--------VVRLFVVTANGT-----V 143 (436)
T ss_pred HcchHhhhhhhhcccccHHHHHHHHHHHHhhC---CccccCCeeccccccCCcc--------eeEEEEEcCCCc-----E
Confidence 0000 013356689999999999999988 3379999999885444321 222 3333332 7
Q ss_pred EEeCEEEEccCCCCCCCCCCCCCcCCcc-ceeEEeecCCC-CCCCCCC-eEEEEcCCCCHHHHHHHHhhh----cCeEEE
Q 044575 161 EVFDAVVVATGHYSYPRLPSIKGMDKWK-RKQMHSHIYRV-PEPFRNE-VVVVVGNSLSGQDISMELVEV----AKEVHL 233 (454)
Q Consensus 161 ~~~d~vViAtG~~~~p~~p~i~G~~~~~-~~~~~~~~~~~-~~~~~~k-~vvVVG~G~sg~e~A~~l~~~----~~~V~l 233 (454)
++++.|||++| ..|.+|+ -...+. ..++|+.+|.. ..+...| +|+|||+|.||.|+...|... ..++.|
T Consensus 144 y~ar~lVlg~G--~~P~IP~--~f~~l~~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~w 219 (436)
T COG3486 144 YRARNLVLGVG--TQPYIPP--CFRSLIGERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNW 219 (436)
T ss_pred EEeeeEEEccC--CCcCCCh--HHhCcCccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCcccee
Confidence 89999999999 9999994 222222 47899998853 2233344 499999999999999998864 346899
Q ss_pred ecccCCcCc-------------cchh------------hhcc------------------------------CCCeEEcC
Q 044575 234 SAKSLNISE-------------GLSK------------VISK------------------------------HNNLHLHP 258 (454)
Q Consensus 234 ~~r~~~~~~-------------~~~~------------~l~~------------------------------~~~i~~~~ 258 (454)
+.|+..+.| .+.+ ++.+ ...+...+
T Consensus 220 itR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ 299 (436)
T COG3486 220 ITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLS 299 (436)
T ss_pred eeccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeecccc
Confidence 999987621 1100 0000 01344566
Q ss_pred ceeEEecCC--cEEEe-----C--CCEEeeceEEEccCcccCCc-CCC---------CCCceeeCCCCcccccCcccCCC
Q 044575 259 QIDCLREDG--RVTFV-----D--GCWVTADTILYCTGYSYSFP-FLD---------TKGIVVVDDDRVGPLYEHTFPPS 319 (454)
Q Consensus 259 ~v~~v~~~~--~v~~~-----d--G~~i~~D~vI~atG~~~~~~-~l~---------~~g~i~v~~~~~~~~~~~~~~~~ 319 (454)
.|..++..+ .+.+. + .+++++|+||+||||+...| ||+ +.|...++.+... .....
T Consensus 300 ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v-----~~~~~ 374 (436)
T COG3486 300 EVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRV-----LWDGP 374 (436)
T ss_pred ceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceee-----ecCCC
Confidence 777776443 23332 2 23678999999999997666 654 3344555443221 11001
Q ss_pred CCCCceEeccccc-----ccchhHHHHHHHHHHHHHcCCCCCCC
Q 044575 320 LAPSLSFVGIPRK-----LIGFPFFESQAKWIAQLLSGKRTLPS 358 (454)
Q Consensus 320 ~~p~l~~iG~~~~-----~~~~~~a~~qa~~~a~~i~g~~~lp~ 358 (454)
....||+.|.... .+.+.++-.-|..++.-+.|+.+-|-
T Consensus 375 ~~~~ifvqn~e~htHGig~pdLsl~a~Raa~I~~~L~g~~~~~~ 418 (436)
T COG3486 375 GKGRIFVQNAELHTHGIGAPDLSLGAWRAAVILNSLLGREKYPV 418 (436)
T ss_pred CcceEEEecccccccccCCccchHHHHHHHHHHHHHhCcCCCCC
Confidence 1134565554331 12334555556666777788866443
No 82
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.76 E-value=1.7e-17 Score=173.51 Aligned_cols=41 Identities=24% Similarity=0.338 Sum_probs=36.0
Q ss_pred cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcc
Q 044575 10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50 (454)
Q Consensus 10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~ 50 (454)
...++|+||||||||++||..|++.|++|++||+.+..|+.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP 421 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence 34689999999999999999999999999999997655443
No 83
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.75 E-value=1.9e-17 Score=163.50 Aligned_cols=261 Identities=24% Similarity=0.281 Sum_probs=163.5
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
.++|+||||||+||++|..|.+.|++|+++|+.+.+||...|.
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yG------------------------------------- 165 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYG------------------------------------- 165 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEec-------------------------------------
Confidence 4899999999999999999999999999999999999998752
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG 171 (454)
.+.|....++.+...++.++.+++ ++.+++|-. .++.... ...||+|++|||
T Consensus 166 --IP~~kl~k~i~d~~i~~l~~~Gv~--~~~~~~vG~------------------~it~~~L------~~e~Dav~l~~G 217 (457)
T COG0493 166 --IPDFKLPKDILDRRLELLERSGVE--FKLNVRVGR------------------DITLEEL------LKEYDAVFLATG 217 (457)
T ss_pred --CchhhccchHHHHHHHHHHHcCeE--EEEcceECC------------------cCCHHHH------HHhhCEEEEecc
Confidence 233344467777777788887865 777776631 1222211 235799999999
Q ss_pred CCCCCCCCCCCCcCCccceeEEeecC--------------CCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcC-eEEEecc
Q 044575 172 HYSYPRLPSIKGMDKWKRKQMHSHIY--------------RVPEPFRNEVVVVVGNSLSGQDISMELVEVAK-EVHLSAK 236 (454)
Q Consensus 172 ~~~~p~~p~i~G~~~~~~~~~~~~~~--------------~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~-~V~l~~r 236 (454)
. ..|+..++||.+.-. +..+.+| .......+|+|+|||+|.+++|++....+.|. +|+.+.+
T Consensus 218 ~-~~~~~l~i~g~d~~g--v~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~ 294 (457)
T COG0493 218 A-GKPRPLDIPGEDAKG--VAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYR 294 (457)
T ss_pred c-cCCCCCCCCCcCCCc--chHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEecc
Confidence 6 678878888875311 0011000 11122356999999999999999998888876 7888853
Q ss_pred cCCc-----Cccchh--hh----ccCC---------CeEE--cCceeEEecCC--------------cEEEeCCC--EEe
Q 044575 237 SLNI-----SEGLSK--VI----SKHN---------NLHL--HPQIDCLREDG--------------RVTFVDGC--WVT 278 (454)
Q Consensus 237 ~~~~-----~~~~~~--~l----~~~~---------~i~~--~~~v~~v~~~~--------------~v~~~dG~--~i~ 278 (454)
...- .+.+.. .+ .+.. .+.. +.+|..+.-.. .+-+ .|+ .++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v-~gs~~~~~ 373 (457)
T COG0493 295 EDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGV-IGTEKTDA 373 (457)
T ss_pred ccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccCcccccccccCccc-cCceEEeh
Confidence 3222 000000 00 0000 1111 12333221000 0111 233 356
Q ss_pred eceEEEccCcccCCcC---------CCCCCceeeCCCCcccccCcccCCCCCCCceEeccccccc-chhHHHHHHHHHHH
Q 044575 279 ADTILYCTGYSYSFPF---------LDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLI-GFPFFESQAKWIAQ 348 (454)
Q Consensus 279 ~D~vI~atG~~~~~~~---------l~~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~-~~~~a~~qa~~~a~ 348 (454)
+|.|+.|+|+.++... ++..|.+.+++... .++.|++|+-|+...+. ..-.|..++|-+|+
T Consensus 374 aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~---------~ts~~~vfa~gD~~~g~~~vv~ai~eGr~aak 444 (457)
T COG0493 374 ADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQ---------QTSIPGVFAGGDAVRGAALVVWAIAEGREAAK 444 (457)
T ss_pred HHHHHHHhccCCCcccccccccccccCCCCceecccccc---------cccCCCeeeCceeccchhhhhhHHhhchHHHH
Confidence 9999999999987544 22345555555431 24568899999988742 33456666666665
Q ss_pred HH
Q 044575 349 LL 350 (454)
Q Consensus 349 ~i 350 (454)
.+
T Consensus 445 ~i 446 (457)
T COG0493 445 AI 446 (457)
T ss_pred hh
Confidence 44
No 84
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.75 E-value=6.9e-17 Score=165.15 Aligned_cols=288 Identities=21% Similarity=0.236 Sum_probs=165.1
Q ss_pred hhccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCC
Q 044575 7 QQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPF 86 (454)
Q Consensus 7 ~~~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (454)
+.....++|.|||+|||||+||..|-+.|+.|+|+||.+++||...|. .|
T Consensus 1780 p~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~yg-----------------------------ip- 1829 (2142)
T KOG0399|consen 1780 PAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYG-----------------------------IP- 1829 (2142)
T ss_pred cccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeec-----------------------------CC-
Confidence 334557899999999999999999999999999999999999998763 11
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEE
Q 044575 87 VLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAV 166 (454)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~v 166 (454)
..-...-+.+.--++..+-|++ +..|+++-+ .|....- .-.+|++
T Consensus 1830 ---------nmkldk~vv~rrv~ll~~egi~--f~tn~eigk------------------~vs~d~l------~~~~dai 1874 (2142)
T KOG0399|consen 1830 ---------NMKLDKFVVQRRVDLLEQEGIR--FVTNTEIGK------------------HVSLDEL------KKENDAI 1874 (2142)
T ss_pred ---------ccchhHHHHHHHHHHHHhhCce--EEeeccccc------------------cccHHHH------hhccCeE
Confidence 1111133455555566666766 555555421 1222211 3468999
Q ss_pred EEccCCCCCCCCCCCCCcCC----ccceeEEee--------cCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcCe-EEE
Q 044575 167 VVATGHYSYPRLPSIKGMDK----WKRKQMHSH--------IYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAKE-VHL 233 (454)
Q Consensus 167 ViAtG~~~~p~~p~i~G~~~----~~~~~~~~~--------~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~-V~l 233 (454)
|+|+|+ ..|+-.++||-+. |.-..+|.. .--.....+||+|+|||||-+|-|+...-.++|.+ |--
T Consensus 1875 v~a~gs-t~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n 1953 (2142)
T KOG0399|consen 1875 VLATGS-TTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGN 1953 (2142)
T ss_pred EEEeCC-CCCcCCCCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceecc
Confidence 999996 5788778888764 211112211 11112345899999999999999998887777654 433
Q ss_pred ecccCCc---------Cccchhhhc-c---------CC------CeE------------EcCceeEEe----cCCcEEEe
Q 044575 234 SAKSLNI---------SEGLSKVIS-K---------HN------NLH------------LHPQIDCLR----EDGRVTFV 272 (454)
Q Consensus 234 ~~r~~~~---------~~~~~~~l~-~---------~~------~i~------------~~~~v~~v~----~~~~v~~~ 272 (454)
++--+.+ -|.+...++ + ++ .+. ..-.+.+++ +.+...+.
T Consensus 1954 ~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~~~g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ 2033 (2142)
T KOG0399|consen 1954 FELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEHYGSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMK 2033 (2142)
T ss_pred eeecCCCCcccCCCCCCccCceEEEeecchHHHHHHhCCCcceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEE
Confidence 3222221 111111110 0 00 011 111122222 11223232
Q ss_pred ----CCCEEeeceEEEccCcccCCcCCCCCCceeeCCCCc-ccccCcccCCCCCCCceEecccccccch-----hHHHHH
Q 044575 273 ----DGCWVTADTILYCTGYSYSFPFLDTKGIVVVDDDRV-GPLYEHTFPPSLAPSLSFVGIPRKLIGF-----PFFESQ 342 (454)
Q Consensus 273 ----dG~~i~~D~vI~atG~~~~~~~l~~~g~i~v~~~~~-~~~~~~~~~~~~~p~l~~iG~~~~~~~~-----~~a~~q 342 (454)
+.+.++||+||+|.||.-.-+-+.+...+..|.... ...++. |.. ..+.+|+.|+|+.+..+ +-....
T Consensus 2034 ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~-y~t-~v~~vfaagdcrrgqslvvwai~egrq~ 2111 (2142)
T KOG0399|consen 2034 EINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDS-YST-DVAKVFAAGDCRRGQSLVVWAIQEGRQA 2111 (2142)
T ss_pred EcCCcceeeecceeeeeccccCcchhhhhhcCcccCccccccCCCcc-ccc-cccceeecccccCCceEEEEEehhhhHH
Confidence 234588999999999984433333223333333111 112222 443 46999999999977543 233333
Q ss_pred HHHHHHHHcCCCCCCCHHHH
Q 044575 343 AKWIAQLLSGKRTLPSWDQM 362 (454)
Q Consensus 343 a~~~a~~i~g~~~lp~~~~~ 362 (454)
|+-+-..+.|.-.+|...+.
T Consensus 2112 a~~vd~~~~~~t~l~~~ggi 2131 (2142)
T KOG0399|consen 2112 ARQVDELMGGTTDLPGDGGI 2131 (2142)
T ss_pred HHHHHHHhCCcccCCCCCch
Confidence 44444455666667765433
No 85
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.74 E-value=7.3e-17 Score=161.29 Aligned_cols=268 Identities=21% Similarity=0.267 Sum_probs=172.9
Q ss_pred EEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCCC
Q 044575 15 VCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGR 92 (454)
Q Consensus 15 VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (454)
++|||+|++|+++|..+++. +.+++++.+..... +..|. +.......
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~----~~~~~------------~~~~~~~~--------------- 49 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYS----YYRCP------------LSLYVGGG--------------- 49 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCC----CCCCc------------cchHHhcc---------------
Confidence 58999999999999999885 46888888765431 11110 00000000
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCC
Q 044575 93 DVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGH 172 (454)
Q Consensus 93 ~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~ 172 (454)
....+.+..... +....++. +..+++|.+++.. ..+|.+.++ ++.||++|+|||
T Consensus 50 ----~~~~~~~~~~~~-~~~~~~i~--~~~~~~v~~id~~------------~~~v~~~~g------~~~yd~LvlatG- 103 (415)
T COG0446 50 ----IASLEDLRYPPR-FNRATGID--VRTGTEVTSIDPE------------NKVVLLDDG------EIEYDYLVLATG- 103 (415)
T ss_pred ----cCCHHHhcccch-hHHhhCCE--EeeCCEEEEecCC------------CCEEEECCC------cccccEEEEcCC-
Confidence 000011111111 11344555 7888999999876 445666654 678999999999
Q ss_pred CCCCCCCCCCCcCCccceeEEeecCCCCCCC-----CCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccc---
Q 044575 173 YSYPRLPSIKGMDKWKRKQMHSHIYRVPEPF-----RNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGL--- 244 (454)
Q Consensus 173 ~~~p~~p~i~G~~~~~~~~~~~~~~~~~~~~-----~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~--- 244 (454)
+.|..++ +. ................+ ..++++|||+|+.|+|+|..+.+.|.+|++++..+++.+.+
T Consensus 104 -a~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~ 178 (415)
T COG0446 104 -ARPRPPP--IS--DWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDP 178 (415)
T ss_pred -CcccCCC--cc--ccCceEEECCHHHHHHHHHHHhccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhH
Confidence 8888775 11 11111111111111111 13799999999999999999999999999999998885443
Q ss_pred --hhh----hccC-CCeEEcCceeEEecCCc------EEEeCCCEEeeceEEEccCcccCCcCCCC--------CCceee
Q 044575 245 --SKV----ISKH-NNLHLHPQIDCLREDGR------VTFVDGCWVTADTILYCTGYSYSFPFLDT--------KGIVVV 303 (454)
Q Consensus 245 --~~~----l~~~-~~i~~~~~v~~v~~~~~------v~~~dG~~i~~D~vI~atG~~~~~~~l~~--------~g~i~v 303 (454)
.+. +..+ ++++.+..+.++..... +...++..+++|.++.++|.+|+..+... .|.+.+
T Consensus 179 ~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v 258 (415)
T COG0446 179 EVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLV 258 (415)
T ss_pred HHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccccHHHHhhCccceeccCCCEEE
Confidence 222 2333 35778888888875431 57788999999999999999998554332 234555
Q ss_pred CCCCcccccCcccCCCCCCCceEecccccc-----------cchhHHHHHHHHHHHHHcCC
Q 044575 304 DDDRVGPLYEHTFPPSLAPSLSFVGIPRKL-----------IGFPFFESQAKWIAQLLSGK 353 (454)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~-----------~~~~~a~~qa~~~a~~i~g~ 353 (454)
|+.... . ..+++|++|++... ..++.+..|++.++.++.+.
T Consensus 259 ~~~~~~--------~-~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~~ 310 (415)
T COG0446 259 DERGGT--------S-KDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGA 310 (415)
T ss_pred cccccc--------C-CCCCEEeccceEeeecccCCceeeeechhhHhhhhHHHHHHhccc
Confidence 554441 1 25788888885532 22458888999999998875
No 86
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.73 E-value=3.6e-16 Score=153.43 Aligned_cols=44 Identities=32% Similarity=0.443 Sum_probs=39.2
Q ss_pred CCCcEEEECcChHHHHHHHHHH-HcCCcEEEEeeCCCCCcccccC
Q 044575 11 QSKNVCVIGAGPSGLVAARELR-KEGHRVVVLEQNHDVGGQWLYD 54 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~-~~g~~v~vie~~~~~GG~w~~~ 54 (454)
..++|+||||||||++||.+|+ +.|++|+|||+.+.+||.+++.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~G 82 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYG 82 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEe
Confidence 3578999999999999999875 5699999999999999999863
No 87
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.71 E-value=3.8e-16 Score=144.17 Aligned_cols=164 Identities=24% Similarity=0.316 Sum_probs=106.5
Q ss_pred cCCCcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCC
Q 044575 10 AQSKNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFV 87 (454)
Q Consensus 10 ~~~~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (454)
...++|||||+||||+.+|..|+++ +++|.|+|+.+.++|..+|.-.
T Consensus 18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVA------------------------------- 66 (468)
T KOG1800|consen 18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVA------------------------------- 66 (468)
T ss_pred cCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccC-------------------------------
Confidence 3457999999999999999999984 6899999999988888775411
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEE
Q 044575 88 LKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVV 167 (454)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vV 167 (454)
|+.|.-..+..-+.+.+++.... +.-|.+| .-.+++..- +-.||.||
T Consensus 67 -------PDHpEvKnvintFt~~aE~~rfs--f~gNv~v------------------G~dvsl~eL------~~~ydavv 113 (468)
T KOG1800|consen 67 -------PDHPEVKNVINTFTKTAEHERFS--FFGNVKV------------------GRDVSLKEL------TDNYDAVV 113 (468)
T ss_pred -------CCCcchhhHHHHHHHHhhccceE--EEeccee------------------cccccHHHH------hhcccEEE
Confidence 11111123334444445543322 2223332 111233221 44699999
Q ss_pred EccCCCCCCCCCCCCCcCCccceeEEeec----CC-------CCCCCCCCeEEEEcCCCCHHHHHHHHhhh---------
Q 044575 168 VATGHYSYPRLPSIKGMDKWKRKQMHSHI----YR-------VPEPFRNEVVVVVGNSLSGQDISMELVEV--------- 227 (454)
Q Consensus 168 iAtG~~~~p~~p~i~G~~~~~~~~~~~~~----~~-------~~~~~~~k~vvVVG~G~sg~e~A~~l~~~--------- 227 (454)
||.|+ ..++..+|||.+. .+ ++.+.. |. ..-++.+.+|+|||.|+.++|+|..|...
T Consensus 114 LaYGa-~~dR~L~IPGe~l-~~-V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TD 190 (468)
T KOG1800|consen 114 LAYGA-DGDRRLDIPGEEL-SG-VISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTD 190 (468)
T ss_pred EEecC-CCCcccCCCCccc-cc-ceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhCCccccccccC
Confidence 99996 5678889999763 11 111111 11 12245688999999999999999988742
Q ss_pred -------------cCeEEEecccCCc
Q 044575 228 -------------AKEVHLSAKSLNI 240 (454)
Q Consensus 228 -------------~~~V~l~~r~~~~ 240 (454)
-++|+++.|+...
T Consensus 191 i~~~aL~~L~~s~VkdV~lvgRRgp~ 216 (468)
T KOG1800|consen 191 IPKLALNLLKRSNVKDVKLVGRRGPL 216 (468)
T ss_pred CcHHHHhhhhcCCcceEEEEeccCcc
Confidence 1369999998765
No 88
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.63 E-value=2.4e-13 Score=131.24 Aligned_cols=203 Identities=20% Similarity=0.274 Sum_probs=132.4
Q ss_pred CcEEEECcChHHHHHHHHHHHc---CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCcccccc--CCCC--
Q 044575 13 KNVCVIGAGPSGLVAARELRKE---GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGY--TDFP-- 85 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~---g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-- 85 (454)
++|+|||+|++|+.+|.+|.+. ...|.|||+.+.+|+..-|....+ ..+.|+|..-|+. +|.|
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p----------~~~lNv~a~~mS~~~pD~p~~ 71 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEP----------EHLLNVPAARMSAFAPDIPQD 71 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCc----------hhhhccccccccccCCCCchH
Confidence 6899999999999999999986 224999999999998888765433 2333444433332 2211
Q ss_pred -----------C--CCCCCCCCCCCCCHHHHHHHHHHHHHHhCCC----ccEEeCeEEEEEEEcCCCccccCCcCCcEEE
Q 044575 86 -----------F--VLKKGRDVRRFPGHKELWLYLKDFCQRFGLR----EMIRFNTRVEYVGMLDCGELIIGNDLIKWVV 148 (454)
Q Consensus 86 -----------~--~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~----~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v 148 (454)
. +...+.+...|+++.-+-+|+.++...+-.. ......++++++.+.++.. .|.+
T Consensus 72 F~~WL~~~~~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~--------~~~~ 143 (474)
T COG4529 72 FVRWLQKQLQRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAG--------GYLV 143 (474)
T ss_pred HHHHHHhcccccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCc--------eEEE
Confidence 0 1111236788999999999998887765211 1233456667766664332 7888
Q ss_pred EEeecCCCeEEEEEeCEEEEccCCCCCCCCCCCCCcCCccceeEEeecCCCC---CCCCCCeEEEEcCCCCHHHHHHHHh
Q 044575 149 KSKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVP---EPFRNEVVVVVGNSLSGQDISMELV 225 (454)
Q Consensus 149 ~~~~~~~~~~~~~~~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~---~~~~~k~vvVVG~G~sg~e~A~~l~ 225 (454)
+..++. +..+|-+|+|||+ +.|..+. -..+......+.+..|... .-..+.+|+|+|+|.+-+|....+.
T Consensus 144 ~~~~g~-----~~~ad~~Vlatgh-~~~~~~~-~~~~~~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~ 216 (474)
T COG4529 144 TTADGP-----SEIADIIVLATGH-SAPPADP-AARDLKGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLR 216 (474)
T ss_pred ecCCCC-----eeeeeEEEEeccC-CCCCcch-hhhccCCCcceeccccCCcccccccCCCceEEecCCchhHHHHHHHh
Confidence 888776 7789999999996 3333222 1111111222333333221 1123457999999999999999999
Q ss_pred hhcC--eEEEecccCCc
Q 044575 226 EVAK--EVHLSAKSLNI 240 (454)
Q Consensus 226 ~~~~--~V~l~~r~~~~ 240 (454)
+.|. .||+++|+...
T Consensus 217 ~~gh~g~It~iSRrGl~ 233 (474)
T COG4529 217 RRGHKGPITAISRRGLV 233 (474)
T ss_pred ccCCccceEEEeccccc
Confidence 9764 59999998743
No 89
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.62 E-value=8.8e-16 Score=142.98 Aligned_cols=296 Identities=15% Similarity=0.228 Sum_probs=172.8
Q ss_pred CCCcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCC-----
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTD----- 83 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 83 (454)
.+...+|||+|.+..++++..+.. +.+|.+|...+.+ ++++.-.++++..+.|
T Consensus 177 ~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepel--------------------PYmRPPLSKELW~~~dpn~~k 236 (659)
T KOG1346|consen 177 KHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPEL--------------------PYMRPPLSKELWWYGDPNSAK 236 (659)
T ss_pred ccCceeEEcCCchhhhcccccccCCCCceEEeeccCccC--------------------cccCCCcchhceecCCCChhh
Confidence 345689999999999999888765 5688888866543 1111111111111111
Q ss_pred -CCCCCCCCC-------CCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCC
Q 044575 84 -FPFVLKKGR-------DVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKA 155 (454)
Q Consensus 84 -~~~~~~~~~-------~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~ 155 (454)
+.|....|. ....|.+.+++-... +=|+. +..+.+|.+|+.. ...|+++++.
T Consensus 237 ~lrfkqwsGkeRsiffepd~FfvspeDLp~~~-----nGGvA--vl~G~kvvkid~~------------d~~V~LnDG~- 296 (659)
T KOG1346|consen 237 KLRFKQWSGKERSIFFEPDGFFVSPEDLPKAV-----NGGVA--VLRGRKVVKIDEE------------DKKVILNDGT- 296 (659)
T ss_pred heeecccCCccceeEecCCcceeChhHCcccc-----cCceE--EEeccceEEeecc------------cCeEEecCCc-
Confidence 111111111 112233333322111 11333 5667788888765 4568888876
Q ss_pred CeEEEEEeCEEEEccCCCCCCCCCC-CCCcC-CccceeEEeecCCCCCCC--------CCCeEEEEcCCCCHHHHHHHHh
Q 044575 156 DKVVEEVFDAVVVATGHYSYPRLPS-IKGMD-KWKRKQMHSHIYRVPEPF--------RNEVVVVVGNSLSGQDISMELV 225 (454)
Q Consensus 156 ~~~~~~~~d~vViAtG~~~~p~~p~-i~G~~-~~~~~~~~~~~~~~~~~~--------~~k~vvVVG~G~sg~e~A~~l~ 225 (454)
++.||+++|||| ..|+-.+ +.... +...++. .|+.+.+| .-++|.|||+|..|.|+|+.|.
T Consensus 297 ----~I~YdkcLIATG--~~Pk~l~~~~~A~~evk~kit---~fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~ 367 (659)
T KOG1346|consen 297 ----TIGYDKCLIATG--VRPKKLQVFEEASEEVKQKIT---YFRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLK 367 (659)
T ss_pred ----EeehhheeeecC--cCcccchhhhhcCHHhhhhee---EEecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHH
Confidence 899999999999 8887543 22111 1111221 12222222 2378999999999999999999
Q ss_pred hh----cCeEEEecccCCc-Cccchhhh---------ccCCCeEEcCceeEEecCC---cEEEeCCCEEeeceEEEccCc
Q 044575 226 EV----AKEVHLSAKSLNI-SEGLSKVI---------SKHNNLHLHPQIDCLREDG---RVTFVDGCWVTADTILYCTGY 288 (454)
Q Consensus 226 ~~----~~~V~l~~r~~~~-~~~~~~~l---------~~~~~i~~~~~v~~v~~~~---~v~~~dG~~i~~D~vI~atG~ 288 (454)
+. |.+|+-+...... ..-+.+.+ ...+.++.+..|+.+.... .+.++||.++..|+||.|+|-
T Consensus 368 rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ 447 (659)
T KOG1346|consen 368 RKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGE 447 (659)
T ss_pred HhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecC
Confidence 74 5677776554332 11122222 2224667777777664322 577889999999999999999
Q ss_pred ccCCcCCCCCCceeeCCCCcccccCcccCCCCCCCceEecccccccc----------hhHHHHHHHHHHHHHcCCCCCCC
Q 044575 289 SYSFPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIG----------FPFFESQAKWIAQLLSGKRTLPS 358 (454)
Q Consensus 289 ~~~~~~l~~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~----------~~~a~~qa~~~a~~i~g~~~lp~ 358 (454)
.||.++... +.+.+|...-+-........ ..|+|+.|+..+... +-.|...+|.+..+|+|..+ |.
T Consensus 448 ePN~ela~~-sgLeiD~~lGGfrvnaeL~a--r~NvwvAGdaacF~D~~LGrRRVehhdhavvSGRLAGENMtgAak-py 523 (659)
T KOG1346|consen 448 EPNSELAEA-SGLEIDEKLGGFRVNAELKA--RENVWVAGDAACFEDGVLGRRRVEHHDHAVVSGRLAGENMTGAAK-PY 523 (659)
T ss_pred CCchhhccc-ccceeecccCcEEeeheeec--ccceeeecchhhhhcccccceeccccccceeeceecccccccccC-Cc
Confidence 999887654 45666664432111112221 268888888765321 22455567777777777543 44
Q ss_pred H
Q 044575 359 W 359 (454)
Q Consensus 359 ~ 359 (454)
.
T Consensus 524 ~ 524 (659)
T KOG1346|consen 524 K 524 (659)
T ss_pred c
Confidence 3
No 90
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.57 E-value=2.1e-14 Score=135.03 Aligned_cols=150 Identities=25% Similarity=0.371 Sum_probs=107.9
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCC---ccccc----cC--
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSP---REIMG----YT-- 82 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~-- 82 (454)
.+||+|||||||||.||..+++.|.+|+|||+.+.+|-.....+....+..++..+..+..+.| +.+.+ |.
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~ 82 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPE 82 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHH
Confidence 4799999999999999999999999999999999987444333333333333344555566666 22221 11
Q ss_pred -------CCCCCCCCCCCCCCCCC---HHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEee
Q 044575 83 -------DFPFVLKKGRDVRRFPG---HKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKE 152 (454)
Q Consensus 83 -------~~~~~~~~~~~~~~~~~---~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~ 152 (454)
.+......+.....||. ...+.+-+..-+++.++. ++++++|.+|+..+. .+.+.+.+
T Consensus 83 d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~--i~~~~~v~~v~~~~~----------~f~l~t~~ 150 (408)
T COG2081 83 DFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVT--IRTRSRVSSVEKDDS----------GFRLDTSS 150 (408)
T ss_pred HHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcE--EEecceEEeEEecCc----------eEEEEcCC
Confidence 11111112234455554 668888888889999998 999999999998863 78898888
Q ss_pred cCCCeEEEEEeCEEEEccCCCCCCCC
Q 044575 153 KKADKVVEEVFDAVVVATGHYSYPRL 178 (454)
Q Consensus 153 ~~~~~~~~~~~d~vViAtG~~~~p~~ 178 (454)
+. ++.+|.||||||..|.|.+
T Consensus 151 g~-----~i~~d~lilAtGG~S~P~l 171 (408)
T COG2081 151 GE-----TVKCDSLILATGGKSWPKL 171 (408)
T ss_pred CC-----EEEccEEEEecCCcCCCCC
Confidence 75 7999999999997777754
No 91
>PRK09897 hypothetical protein; Provisional
Probab=99.57 E-value=4.3e-14 Score=142.87 Aligned_cols=198 Identities=20% Similarity=0.297 Sum_probs=119.1
Q ss_pred CcEEEECcChHHHHHHHHHHHcC--CcEEEEeeCCCCCcccccCCCCCCCCccccccccceecC-----CccccccCCC-
Q 044575 13 KNVCVIGAGPSGLVAARELRKEG--HRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTS-----PREIMGYTDF- 84 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g--~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~- 84 (454)
++|+||||||+|+++|.+|.+.+ .+|+|||++..+|..+.|....++. .+..|. |.....|..+
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~--------~L~~N~~~~~~p~~~~~f~~Wl 73 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSK--------MMLANIASIEIPPIYCTYLEWL 73 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChH--------HHHhcccccccCCChHHHHHHh
Confidence 58999999999999999998864 5899999998899655544322111 001110 0000111111
Q ss_pred -----------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-------CCCccEEeCeEEEEEEEcCCCccccCCcCCcE
Q 044575 85 -----------PFVLKKGRDVRRFPGHKELWLYLKDFCQRF-------GLREMIRFNTRVEYVGMLDCGELIIGNDLIKW 146 (454)
Q Consensus 85 -----------~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-------~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~ 146 (454)
.... .......|+++..+-+|+++..+.+ +....++.+++|++|+..++ .|
T Consensus 74 ~~~~~~~~~~~g~~~-~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~----------g~ 142 (534)
T PRK09897 74 QKQEDSHLQRYGVKK-ETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNA----------GV 142 (534)
T ss_pred hhhhHHHHHhcCCcc-eeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCC----------EE
Confidence 0000 0002346888887777777765543 21223566889999987643 68
Q ss_pred EEEEeecCCCeEEEEEeCEEEEccCCCCCCCCCCCCCcCCc-cceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHh
Q 044575 147 VVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPSIKGMDKW-KRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELV 225 (454)
Q Consensus 147 ~v~~~~~~~~~~~~~~~d~vViAtG~~~~p~~p~i~G~~~~-~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~ 225 (454)
.|++.+++ ..+.+|+||+|||+ ..|..+ ++...+ .... ... ......+.+|+|+|.|.|++|++..|.
T Consensus 143 ~V~t~~gg----~~i~aD~VVLAtGh-~~p~~~--~~~~~yi~~pw--~~~--~~~~i~~~~V~I~GtGLt~iD~v~~Lt 211 (534)
T PRK09897 143 MLATNQDL----PSETFDLAVIATGH-VWPDEE--EATRTYFPSPW--SGL--MEAKVDACNVGIMGTSLSGLDAAMAVA 211 (534)
T ss_pred EEEECCCC----eEEEcCEEEECCCC-CCCCCC--hhhccccCCCC--cch--hhcCCCCCeEEEECCCHHHHHHHHHHH
Confidence 88775431 16789999999996 233322 111111 0000 000 011224689999999999999999988
Q ss_pred hhc---------------------CeEEEecccCCc
Q 044575 226 EVA---------------------KEVHLSAKSLNI 240 (454)
Q Consensus 226 ~~~---------------------~~V~l~~r~~~~ 240 (454)
..+ .+|++++|+..+
T Consensus 212 ~~gG~F~~~~~~~~~l~y~~sg~~~~I~a~SRrGl~ 247 (534)
T PRK09897 212 IQHGSFIEDDKQHVVFHRDNASEKLNITLMSRTGIL 247 (534)
T ss_pred hcCCceeccCCCcceeeecCCCCCceEEEEeCCCCC
Confidence 552 268888887653
No 92
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.57 E-value=1.7e-15 Score=135.79 Aligned_cols=153 Identities=27% Similarity=0.331 Sum_probs=87.1
Q ss_pred cEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCCCC
Q 044575 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGRD 93 (454)
Q Consensus 14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (454)
||+|||||+||++||.+|++.+.+++++|+.+..+.... ..+.......
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~------------~~~~~~~~~~------------------- 49 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSG------------CIPSPLLVEI------------------- 49 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHS------------HHHHHHHHHH-------------------
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccc------------cccccccccc-------------------
Confidence 699999999999999999999999999988764321100 0000000000
Q ss_pred CCCCCCHHHHH--H--HHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEc
Q 044575 94 VRRFPGHKELW--L--YLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA 169 (454)
Q Consensus 94 ~~~~~~~~~~~--~--yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViA 169 (454)
........ + .+.+...+.++. +.++++|.+|+.....- . .. .+.+..... +...++.||+||||
T Consensus 50 ---~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~~~~---~-~~-~~~~~~~~~--~~~~~~~~d~lviA 117 (201)
T PF07992_consen 50 ---APHRHEFLPARLFKLVDQLKNRGVE--IRLNAKVVSIDPESKRV---V-CP-AVTIQVVET--GDGREIKYDYLVIA 117 (201)
T ss_dssp ---HHHHHHHHHHHHGHHHHHHHHHTHE--EEHHHTEEEEEESTTEE---E-ET-CEEEEEEET--TTEEEEEEEEEEEE
T ss_pred ---cccccccccccccccccccccceEE--Eeecccccccccccccc---c-cC-cccceeecc--CCceEecCCeeeec
Confidence 00000111 0 222222445655 66889999998765310 0 00 122322221 23458999999999
Q ss_pred cCCCCCCCCCCCCCcCC--ccceeEEeecCCCCCCCCCCeEEEEc
Q 044575 170 TGHYSYPRLPSIKGMDK--WKRKQMHSHIYRVPEPFRNEVVVVVG 212 (454)
Q Consensus 170 tG~~~~p~~p~i~G~~~--~~~~~~~~~~~~~~~~~~~k~vvVVG 212 (454)
|| +.|+.|.+||.+. +.....++..+...... .++|+|||
T Consensus 118 tG--~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~-~~~v~VvG 159 (201)
T PF07992_consen 118 TG--SRPRTPNIPGEEVAYFLRGVDDAQRFLELLES-PKRVAVVG 159 (201)
T ss_dssp ST--EEEEEESSTTTTTECBTTSEEHHHHHHTHSST-TSEEEEES
T ss_pred Cc--cccceeecCCCccccccccccccccccccccc-cccccccc
Confidence 99 8899999999732 11223333333222222 34999999
No 93
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.51 E-value=1.3e-13 Score=121.47 Aligned_cols=154 Identities=17% Similarity=0.292 Sum_probs=94.5
Q ss_pred cEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 14 NVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 14 ~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
+.+|||||.||.+||..|+.. ..+|+++..++.+-.+-+
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn--------------------------------------- 41 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTN--------------------------------------- 41 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhh---------------------------------------
Confidence 368999999999999999986 568999988653311111
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCcc------EEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCE
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREM------IRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDA 165 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~------i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~ 165 (454)
...+.+ |.++|++++. -.|..-+.+|...+.. ...+.+.++. .+.|++
T Consensus 42 --------~~~i~~----ylekfdv~eq~~~elg~~f~~~~~~v~~~~s~---------ehci~t~~g~-----~~ky~k 95 (334)
T KOG2755|consen 42 --------YQKIGQ----YLEKFDVKEQNCHELGPDFRRFLNDVVTWDSS---------EHCIHTQNGE-----KLKYFK 95 (334)
T ss_pred --------HHHHHH----HHHhcCccccchhhhcccHHHHHHhhhhhccc---------cceEEecCCc-----eeeEEE
Confidence 022333 3333433310 0111112222222211 4567777776 889999
Q ss_pred EEEccCCCCCCCCCCCCCcCCccceeEEeecCCCC-----CCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575 166 VVVATGHYSYPRLPSIKGMDKWKRKQMHSHIYRVP-----EPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI 240 (454)
Q Consensus 166 vViAtG~~~~p~~p~i~G~~~~~~~~~~~~~~~~~-----~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~ 240 (454)
|++||| .+|..- .+|.+. +++--++-... ...+.|.|+|+|.|-+++|++.++... .|+|....+.+
T Consensus 96 KOG~tg--~kPklq-~E~~n~---~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk~~--nv~w~ikd~~I 167 (334)
T KOG2755|consen 96 LCLCTG--YKPKLQ-VEGINP---KIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELKIL--NVTWKIKDEGI 167 (334)
T ss_pred EEEecC--CCccee-ecCCCc---eEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhhcc--eeEEEecchhh
Confidence 999999 888754 233221 12222221111 123679999999999999999999876 68887776655
No 94
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.45 E-value=7.3e-14 Score=137.12 Aligned_cols=148 Identities=35% Similarity=0.520 Sum_probs=81.8
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCC--------cccccCC-CCCCCCcc-------ccccccceecCCc
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVG--------GQWLYDP-NTDQTEVH-------SSVYASLRLTSPR 76 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~G--------G~w~~~~-~~~~~~~~-------~~~~~~~~~~~~~ 76 (454)
|||+|||||||||.||..|++.|.+|+|+||++.+| |.|+.++ ........ ..+...+....+.
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 689999999999999999999999999999999986 6676654 21111000 0011111111111
Q ss_pred ccccc---CCCCCCCCCCCCCCCCC---CHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEE
Q 044575 77 EIMGY---TDFPFVLKKGRDVRRFP---GHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKS 150 (454)
Q Consensus 77 ~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~ 150 (454)
.+..| -+.+... ..+...|| ...++.+-|...+++.++. ++++++|.+|...++. .|.|.+
T Consensus 81 d~~~ff~~~Gv~~~~--~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~--i~~~~~V~~i~~~~~~---------~f~v~~ 147 (409)
T PF03486_consen 81 DLIAFFEELGVPTKI--EEDGRVFPKSDKASSVVDALLEELKRLGVE--IHFNTRVKSIEKKEDG---------VFGVKT 147 (409)
T ss_dssp HHHHHHHHTT--EEE---STTEEEETT--HHHHHHHHHHHHHHHT-E--EE-S--EEEEEEETTE---------EEEEEE
T ss_pred HHHHHHHhcCCeEEE--cCCCEECCCCCcHHHHHHHHHHHHHHcCCE--EEeCCEeeeeeecCCc---------eeEeec
Confidence 11111 1122211 11223333 4567888888888999988 9999999999887653 588888
Q ss_pred eecCCCeEEEEEeCEEEEccCCCCCCCC
Q 044575 151 KEKKADKVVEEVFDAVVVATGHYSYPRL 178 (454)
Q Consensus 151 ~~~~~~~~~~~~~d~vViAtG~~~~p~~ 178 (454)
.+.. ++.+|+||||||..+.|..
T Consensus 148 ~~~~-----~~~a~~vILAtGG~S~p~~ 170 (409)
T PF03486_consen 148 KNGG-----EYEADAVILATGGKSYPKT 170 (409)
T ss_dssp TTTE-----EEEESEEEE----SSSGGG
T ss_pred cCcc-----cccCCEEEEecCCCCcccc
Confidence 4333 7899999999997665543
No 95
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.44 E-value=9.8e-12 Score=118.68 Aligned_cols=41 Identities=41% Similarity=0.669 Sum_probs=38.7
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL 52 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~ 52 (454)
.++++|||||+|||+||+.|++.|++|+++||++.+||...
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrma 164 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMA 164 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHH
Confidence 47899999999999999999999999999999999999854
No 96
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=99.37 E-value=1e-11 Score=106.28 Aligned_cols=131 Identities=30% Similarity=0.379 Sum_probs=90.0
Q ss_pred EEECcChHHHHHHHHHHHc-----CCcEEEEeeCCCC-CcccccCCCCCCCCccccccccceecCCccccccC-CCC---
Q 044575 16 CVIGAGPSGLVAARELRKE-----GHRVVVLEQNHDV-GGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYT-DFP--- 85 (454)
Q Consensus 16 vIIGaG~aGl~aA~~l~~~-----g~~v~vie~~~~~-GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--- 85 (454)
+|||+|++|++++.+|.+. ..+|+|||+++.- |+.|... ..+....|++...|... +-|
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~-----------~~~~~llN~~a~~~s~~~~~~~~~ 69 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPD-----------QPPSHLLNTPADQMSLFPDDPGDD 69 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCC-----------CChHHhhcccccccccccccCCCC
Confidence 5999999999999999887 4699999996552 3456532 12344555555555442 211
Q ss_pred CC---CC------CCCCCCCCCCHHHHHHHHHHHHHHhC--CCc---cEEeCeEEEEEEEcCCCccccCCcCCcEEEEEe
Q 044575 86 FV---LK------KGRDVRRFPGHKELWLYLKDFCQRFG--LRE---MIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSK 151 (454)
Q Consensus 86 ~~---~~------~~~~~~~~~~~~~~~~yl~~~~~~~~--~~~---~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~ 151 (454)
|. .. .......|+++..+-+||+++.+..- +.. ....+.+|++|+..++ .|.|.+.
T Consensus 70 f~~Wl~~~~~~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~----------~~~v~~~ 139 (156)
T PF13454_consen 70 FVDWLRANGADEAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDD----------GYRVVTA 139 (156)
T ss_pred HHHHHHhcCcccccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCC----------cEEEEEC
Confidence 10 00 11245689999999999998887642 211 1234678899888754 6888887
Q ss_pred ecCCCeEEEEEeCEEEEccCC
Q 044575 152 EKKADKVVEEVFDAVVVATGH 172 (454)
Q Consensus 152 ~~~~~~~~~~~~d~vViAtG~ 172 (454)
++. .+.||+||+|||+
T Consensus 140 ~g~-----~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 140 DGQ-----SIRADAVVLATGH 155 (156)
T ss_pred CCC-----EEEeCEEEECCCC
Confidence 775 7899999999995
No 97
>PRK06847 hypothetical protein; Provisional
Probab=99.28 E-value=1.7e-10 Score=113.83 Aligned_cols=149 Identities=23% Similarity=0.204 Sum_probs=88.0
Q ss_pred cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCc---ccccCCCCCC---------CCcc-ccccccceecCCc
Q 044575 10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG---QWLYDPNTDQ---------TEVH-SSVYASLRLTSPR 76 (454)
Q Consensus 10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG---~w~~~~~~~~---------~~~~-~~~~~~~~~~~~~ 76 (454)
.+.+||+|||||++|+++|..|++.|++|+|+|+++.+.. .....+..-. .... ...........+.
T Consensus 2 ~~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~ 81 (375)
T PRK06847 2 AAVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPD 81 (375)
T ss_pred CCcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCC
Confidence 4457999999999999999999999999999999875321 1000000000 0000 0000000000000
Q ss_pred cccccCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecC
Q 044575 77 EIMGYTDFPFVLKKGR--DVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKK 154 (454)
Q Consensus 77 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~ 154 (454)
.. .+..++.+...+. .......+.++.+++.+.+.+.++. ++++++|++++..++ .+.|.+.++.
T Consensus 82 g~-~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~~----------~~~v~~~~g~ 148 (375)
T PRK06847 82 GT-LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGAD--VRLGTTVTAIEQDDD----------GVTVTFSDGT 148 (375)
T ss_pred CC-EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCE--EEeCCEEEEEEEcCC----------EEEEEEcCCC
Confidence 00 0001111000000 1112356788899999988888876 899999999986543 6777776654
Q ss_pred CCeEEEEEeCEEEEccCCCCCC
Q 044575 155 ADKVVEEVFDAVVVATGHYSYP 176 (454)
Q Consensus 155 ~~~~~~~~~d~vViAtG~~~~p 176 (454)
++.+|.||+|+|.++..
T Consensus 149 -----~~~ad~vI~AdG~~s~~ 165 (375)
T PRK06847 149 -----TGRYDLVVGADGLYSKV 165 (375)
T ss_pred -----EEEcCEEEECcCCCcch
Confidence 68999999999965543
No 98
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.26 E-value=4.1e-11 Score=110.59 Aligned_cols=148 Identities=26% Similarity=0.305 Sum_probs=87.3
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCc-ccccCCCCCCCCccccccccceec-CCccccccCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG-QWLYDPNTDQTEVHSSVYASLRLT-SPREIMGYTDFPFVLK 89 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG-~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 89 (454)
.+||+||||||+|++||..|++.|.+|+|+||+..+|| .|.... .+...... ....++..-+.++...
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~----------~~~~~~~~~~~~~~l~~~gi~~~~~ 90 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGM----------LFSKIVVEKPAHEILDEFGIRYEDE 90 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCc----------ceecccccchHHHHHHHCCCCeeec
Confidence 58999999999999999999999999999999998864 453211 11111000 0011111122333220
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEc
Q 044575 90 KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVA 169 (454)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViA 169 (454)
. .........++.+.+.+.+.+.++. +.+++.|.++...++...+.+-.. .|......+......++.++.||.|
T Consensus 91 ~--~g~~~~~~~el~~~L~~~a~e~GV~--I~~~t~V~dli~~~~~~~V~GVv~-~~~~v~~~g~~~d~~~i~Ak~VVdA 165 (254)
T TIGR00292 91 G--DGYVVADSAEFISTLASKALQAGAK--IFNGTSVEDLITRDDTVGVAGVVI-NWSAIELAGLHVDPLTQRSRVVVDA 165 (254)
T ss_pred c--CceEEeeHHHHHHHHHHHHHHcCCE--EECCcEEEEEEEeCCCCceEEEEe-CCccccccCCCCCCEEEEcCEEEEe
Confidence 0 1011234568888888888888877 889999999887554200000000 1111111111112357899999999
Q ss_pred cCCCC
Q 044575 170 TGHYS 174 (454)
Q Consensus 170 tG~~~ 174 (454)
||+.+
T Consensus 166 TG~~a 170 (254)
T TIGR00292 166 TGHDA 170 (254)
T ss_pred ecCCc
Confidence 99643
No 99
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.25 E-value=1.1e-10 Score=105.85 Aligned_cols=258 Identities=18% Similarity=0.200 Sum_probs=139.2
Q ss_pred CCCcEEEECcChHHHHHHHHHHHc-CC-cEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKE-GH-RVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVL 88 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~-g~-~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (454)
++++|+|||||.+|+++|..+.++ +. +|.|+|..++ +.|....+-+-.+++.+..-.-+
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~------------------HyYQPgfTLvGgGl~~l~~srr~- 98 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED------------------HYYQPGFTLVGGGLKSLDSSRRK- 98 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh------------------cccCcceEEeccchhhhhhccCc-
Confidence 568999999999999999998776 44 8999998764 34544444444444433221100
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEE
Q 044575 89 KKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVV 168 (454)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVi 168 (454)
-....|... .++++.+++|+-. +-+|.+++++ ++.|||+||
T Consensus 99 ----~a~liP~~a---~wi~ekv~~f~P~---------------------------~N~v~t~gg~-----eIsYdylvi 139 (446)
T KOG3851|consen 99 ----QASLIPKGA---TWIKEKVKEFNPD---------------------------KNTVVTRGGE-----EISYDYLVI 139 (446)
T ss_pred ----ccccccCCc---HHHHHHHHhcCCC---------------------------cCeEEccCCc-----EEeeeeEee
Confidence 011112111 2334444444322 4456677666 899999999
Q ss_pred ccCCCCCCCCCCCCCcCC-ccce---eEEeec-----CCCCCC---------CCCCeEEEEcCCCCHHHHHHHHhh-hcC
Q 044575 169 ATGHYSYPRLPSIKGMDK-WKRK---QMHSHI-----YRVPEP---------FRNEVVVVVGNSLSGQDISMELVE-VAK 229 (454)
Q Consensus 169 AtG~~~~p~~p~i~G~~~-~~~~---~~~~~~-----~~~~~~---------~~~k~vvVVG~G~sg~e~A~~l~~-~~~ 229 (454)
|+|. .-+.-.|+|+.+ +..+ ...|-. |..... |++-.|=.-|+-.-.+-++..+-+ .|.
T Consensus 140 A~Gi--ql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gv 217 (446)
T KOG3851|consen 140 AMGI--QLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGV 217 (446)
T ss_pred eeec--eeccchhcChHhhccCCCcccccChHHHHHHHHHHHhccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCc
Confidence 9994 444444556433 1111 011110 111111 233334444665556666665444 343
Q ss_pred --eEEEecccCCc--------CccchhhhccC-CCeEEcCceeEEecCC-cEEEeC----CC--EEeeceEEEccCccc-
Q 044575 230 --EVHLSAKSLNI--------SEGLSKVISKH-NNLHLHPQIDCLREDG-RVTFVD----GC--WVTADTILYCTGYSY- 290 (454)
Q Consensus 230 --~V~l~~r~~~~--------~~~~~~~l~~~-~~i~~~~~v~~v~~~~-~v~~~d----G~--~i~~D~vI~atG~~~- 290 (454)
++.++...... ...+.+.+++. ..+..+..+.++..++ ..+|++ |. +++++++-...-..+
T Consensus 218 Rd~a~iiy~Tsl~~iFgVk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L~kPG~t~ei~yslLHv~Ppms~p 297 (446)
T KOG3851|consen 218 RDNANIIYNTSLPTIFGVKHYADALEKVIQERNITVNYKRNLIEVRTNDRKAVFENLDKPGVTEEIEYSLLHVTPPMSTP 297 (446)
T ss_pred cccccEEEecCccceecHHHHHHHHHHHHHhcceEeeeccceEEEeccchhhHHHhcCCCCceeEEeeeeeeccCCCCCh
Confidence 35555443322 22233333322 2444445555554333 333432 54 466888877666553
Q ss_pred ----CCcCCCCCCceeeCCCCcccccCcccCCCCCCCceEecccccccch
Q 044575 291 ----SFPFLDTKGIVVVDDDRVGPLYEHTFPPSLAPSLSFVGIPRKLIGF 336 (454)
Q Consensus 291 ----~~~~l~~~g~i~v~~~~~~~~~~~~~~~~~~p~l~~iG~~~~~~~~ 336 (454)
+.++.+..|++.||..... ....||+|.||||.+.++.
T Consensus 298 e~l~~s~~adktGfvdVD~~TlQ--------s~kypNVFgiGDc~n~Pns 339 (446)
T KOG3851|consen 298 EVLANSDLADKTGFVDVDQSTLQ--------SKKYPNVFGIGDCMNLPNS 339 (446)
T ss_pred hhhhcCcccCcccceecChhhhc--------cccCCCceeeccccCCCch
Confidence 3455667788888864331 1346999999999987654
No 100
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.22 E-value=1.1e-10 Score=108.07 Aligned_cols=142 Identities=27% Similarity=0.225 Sum_probs=85.4
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcc-cccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ-WLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK 90 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (454)
.+||+||||||||++||.+|++.|++|+|+|++..+||. |......+....... ....+.--+.++....
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~---------~~~~l~~~gv~~~~~~ 95 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEE---------ADEILDEFGIRYKEVE 95 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHH---------HHHHHHHCCCCceeec
Confidence 589999999999999999999999999999999988764 321100000000000 0000111122222100
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEe------ecCCCeEEEEEeC
Q 044575 91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSK------EKKADKVVEEVFD 164 (454)
Q Consensus 91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~------~~~~~~~~~~~~d 164 (454)
.......+.++...|.+.+.+.++. ++++++|.++...+++. -+-+.+. .+......++.++
T Consensus 96 --~g~~~vd~~~l~~~L~~~A~~~Gv~--I~~~t~V~dl~~~~~g~--------V~Gvv~~~~~v~~~g~~~~~~~i~Ak 163 (257)
T PRK04176 96 --DGLYVADSVEAAAKLAAAAIDAGAK--IFNGVSVEDVILREDPR--------VAGVVINWTPVEMAGLHVDPLTIEAK 163 (257)
T ss_pred --CcceeccHHHHHHHHHHHHHHcCCE--EEcCceeceeeEeCCCc--------EEEEEEccccccccCCCCCcEEEEcC
Confidence 1111235577888888888888887 88999999987654310 1222221 1111123478999
Q ss_pred EEEEccCCCC
Q 044575 165 AVVVATGHYS 174 (454)
Q Consensus 165 ~vViAtG~~~ 174 (454)
+||+|||+++
T Consensus 164 ~VI~ATG~~a 173 (257)
T PRK04176 164 AVVDATGHDA 173 (257)
T ss_pred EEEEEeCCCc
Confidence 9999999754
No 101
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.19 E-value=1.5e-10 Score=110.09 Aligned_cols=140 Identities=24% Similarity=0.237 Sum_probs=85.1
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCC--Ccccc------ccccceecCCccccccCCC
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQT--EVHSS------VYASLRLTSPREIMGYTDF 84 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~--~~~~~------~~~~~~~~~~~~~~~~~~~ 84 (454)
+||+|||||++|+++|..|++.|.+|+|||+.+..+..+......+.. .+... .........+..-. ...
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~ 78 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDS--VEI 78 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcE--EEe
Confidence 589999999999999999999999999999998765433211111100 00000 00000000000000 001
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeC
Q 044575 85 PFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFD 164 (454)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d 164 (454)
+.+. ......++.++.+.+.+.+.+.++. ++++++|+++...++ .+.+.+..+ ..++++|
T Consensus 79 ~~~~----~~~~~i~r~~l~~~l~~~~~~~gv~--~~~~~~v~~~~~~~~----------~~~~~~~~~----~~~~~a~ 138 (295)
T TIGR02032 79 PIET----ELAYVIDRDAFDEQLAERAQEAGAE--LRLGTTVLDVEIHDD----------RVVVIVRGG----EGTVTAK 138 (295)
T ss_pred ccCC----CcEEEEEHHHHHHHHHHHHHHcCCE--EEeCcEEeeEEEeCC----------EEEEEEcCc----cEEEEeC
Confidence 1110 1122356788889999999888877 889999999877643 444544322 2268999
Q ss_pred EEEEccCCCC
Q 044575 165 AVVVATGHYS 174 (454)
Q Consensus 165 ~vViAtG~~~ 174 (454)
+||+|+|.++
T Consensus 139 ~vv~a~G~~s 148 (295)
T TIGR02032 139 IVIGADGSRS 148 (295)
T ss_pred EEEECCCcch
Confidence 9999999644
No 102
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.17 E-value=5.3e-10 Score=111.94 Aligned_cols=143 Identities=19% Similarity=0.263 Sum_probs=82.9
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCC------cccccc----
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSP------REIMGY---- 81 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~---- 81 (454)
.+||+||||||||++||..|++.|++|+|+||.+.+|......+......+ ...++.+....| ...+.+
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~-e~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSL-EHIIPGFADSAPVERLITHEKLAFMTEK 83 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhH-HHHhhhhhhcCcccceeeeeeEEEEcCC
Confidence 589999999999999999999999999999998876532111100000000 000000000000 000000
Q ss_pred --CCCCCCCC--CCCCCCCC-CCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCC
Q 044575 82 --TDFPFVLK--KGRDVRRF-PGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKAD 156 (454)
Q Consensus 82 --~~~~~~~~--~~~~~~~~-~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~ 156 (454)
..+.+... .......| ..+.++.++|.+.+++.++. +..+++|+++...++ .+.+...++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~--i~~~~~V~~i~~~~g----------~v~~v~~~g~-- 149 (428)
T PRK10157 84 SAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQ--LITGIRVDNLVQRDG----------KVVGVEADGD-- 149 (428)
T ss_pred CceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCE--EECCCEEEEEEEeCC----------EEEEEEcCCc--
Confidence 00011100 00011122 45778888999999888887 888999999876532 3333333332
Q ss_pred eEEEEEeCEEEEccCC
Q 044575 157 KVVEEVFDAVVVATGH 172 (454)
Q Consensus 157 ~~~~~~~d~vViAtG~ 172 (454)
++.+|.||+|+|.
T Consensus 150 ---~i~A~~VI~A~G~ 162 (428)
T PRK10157 150 ---VIEAKTVILADGV 162 (428)
T ss_pred ---EEECCEEEEEeCC
Confidence 6899999999994
No 103
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.16 E-value=5e-10 Score=110.94 Aligned_cols=144 Identities=20% Similarity=0.218 Sum_probs=83.7
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeC-CC---CCcccccC---C-CCCCCCccccccccceecCCccccccCCC
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQN-HD---VGGQWLYD---P-NTDQTEVHSSVYASLRLTSPREIMGYTDF 84 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~-~~---~GG~w~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (454)
+||+||||||||+++|+.|++.|++|+|+|+. +. .||..... . ..+.... ...+.......|.........
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~-~~~~~~~~~~~~~~~~~~~~~ 79 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLI-DRRVTQMRMISPSRVPIKVTI 79 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHH-hhhcceeEEEcCCCceeeecc
Confidence 58999999999999999999999999999997 22 12211100 0 0000000 011111222222110000011
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeec---CCCeEEEE
Q 044575 85 PFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEK---KADKVVEE 161 (454)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~ 161 (454)
+... .......+..+.++|.+.+.+.++. +. .++|+++...++ .+.|++.++ .+++..++
T Consensus 80 ~~~~----~~~~~~~r~~fd~~L~~~a~~~G~~--v~-~~~v~~v~~~~~----------~~~v~~~~~~~~~~~~~~~i 142 (388)
T TIGR02023 80 PSED----GYVGMVRREVFDSYLRERAQKAGAE--LI-HGLFLKLERDRD----------GVTLTYRTPKKGAGGEKGSV 142 (388)
T ss_pred CCCC----CceEeeeHHHHHHHHHHHHHhCCCE--EE-eeEEEEEEEcCC----------eEEEEEEeccccCCCcceEE
Confidence 1000 1111267888999999999888876 54 446888876543 677777642 11223478
Q ss_pred EeCEEEEccCCCC
Q 044575 162 VFDAVVVATGHYS 174 (454)
Q Consensus 162 ~~d~vViAtG~~~ 174 (454)
++|.||.|+|.++
T Consensus 143 ~a~~VI~AdG~~S 155 (388)
T TIGR02023 143 EADVVIGADGANS 155 (388)
T ss_pred EeCEEEECCCCCc
Confidence 9999999999655
No 104
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.14 E-value=5.2e-10 Score=110.97 Aligned_cols=136 Identities=19% Similarity=0.150 Sum_probs=83.8
Q ss_pred cEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccc--ccCCCCCCCCccccccccceecCCcccc--ccCCCCCCCC
Q 044575 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQW--LYDPNTDQTEVHSSVYASLRLTSPREIM--GYTDFPFVLK 89 (454)
Q Consensus 14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 89 (454)
||+|||||+||+++|..|++.|++|+|+|+++.+|+.+ ......... ........+.-.... .+.+.+...
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~- 75 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSD----LGLADCVEHVWPDVYEYRFPKQPRKL- 75 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhh----hchhhHHhhcCCCceEEecCCcchhc-
Confidence 79999999999999999999999999999998887642 221110000 000000000000000 001110000
Q ss_pred CCCCCC-CCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEE
Q 044575 90 KGRDVR-RFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVV 168 (454)
Q Consensus 90 ~~~~~~-~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVi 168 (454)
..+ ....+..+.+++.+.+.+.++. + +.++|..+...+.. .|.|++.++. ++++|.||.
T Consensus 76 ---~~~~~~i~~~~l~~~l~~~~~~~gv~--~-~~~~v~~i~~~~~~---------~~~v~~~~g~-----~~~a~~VI~ 135 (388)
T TIGR01790 76 ---GTAYGSVDSTRLHEELLQKCPEGGVL--W-LERKAIHAEADGVA---------LSTVYCAGGQ-----RIQARLVID 135 (388)
T ss_pred ---CCceeEEcHHHHHHHHHHHHHhcCcE--E-EccEEEEEEecCCc---------eeEEEeCCCC-----EEEeCEEEE
Confidence 111 1156788889998888877764 4 46688888765333 6888876654 789999999
Q ss_pred ccCCCC
Q 044575 169 ATGHYS 174 (454)
Q Consensus 169 AtG~~~ 174 (454)
|+|..+
T Consensus 136 A~G~~s 141 (388)
T TIGR01790 136 ARGFGP 141 (388)
T ss_pred CCCCch
Confidence 999544
No 105
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.13 E-value=3.7e-10 Score=112.03 Aligned_cols=143 Identities=21% Similarity=0.220 Sum_probs=87.4
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCcccccccc----ceecCCccccccCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYAS----LRLTSPREIMGYTDFPFV 87 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 87 (454)
.+||+||||||||.+||+.|++.|++|+|+|+.+.+|..-..........+. ..... +........+.+..-...
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~-~l~~~~~~~i~~~v~~~~~~~~~~~~~ 81 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALE-ELIPDFDEEIERKVTGARIYFPGEKVA 81 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHH-HhCCCcchhhheeeeeeEEEecCCceE
Confidence 4899999999999999999999999999999999887643221111000000 00000 001111111111100000
Q ss_pred CCCCCCCCCC-CCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEE
Q 044575 88 LKKGRDVRRF-PGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAV 166 (454)
Q Consensus 88 ~~~~~~~~~~-~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~v 166 (454)
... .....| ..+..+.++|...+++.+.. +..+++|..+...++ ...+.+..++ .++.+++|
T Consensus 82 ~~~-~~~~~y~v~R~~fd~~La~~A~~aGae--~~~~~~~~~~~~~~~----------~~~~~~~~~~----~e~~a~~v 144 (396)
T COG0644 82 IEV-PVGEGYIVDRAKFDKWLAERAEEAGAE--LYPGTRVTGVIREDD----------GVVVGVRAGD----DEVRAKVV 144 (396)
T ss_pred Eec-CCCceEEEEhHHhhHHHHHHHHHcCCE--EEeceEEEEEEEeCC----------cEEEEEEcCC----EEEEcCEE
Confidence 000 001122 35678888999999999988 999999999988765 3444444332 47899999
Q ss_pred EEccCC
Q 044575 167 VVATGH 172 (454)
Q Consensus 167 ViAtG~ 172 (454)
|.|+|.
T Consensus 145 I~AdG~ 150 (396)
T COG0644 145 IDADGV 150 (396)
T ss_pred EECCCc
Confidence 999994
No 106
>PRK06834 hypothetical protein; Provisional
Probab=99.12 E-value=7.7e-10 Score=112.39 Aligned_cols=142 Identities=17% Similarity=0.144 Sum_probs=84.1
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCC----CccccccccceecC--------Ccccc
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQT----EVHSSVYASLRLTS--------PREIM 79 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~----~~~~~~~~~~~~~~--------~~~~~ 79 (454)
.+||+||||||+|+++|..|++.|++|+|||+.+.....-......... +-....++.+.... .....
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRL 82 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEec
Confidence 4799999999999999999999999999999986421000000000000 00000111111000 00001
Q ss_pred ccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEE
Q 044575 80 GYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVV 159 (454)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 159 (454)
.+.+++... ..........+.+.|.+.+++.++. ++++++|++++..++ .+.+++.++.
T Consensus 83 ~~~~~~~~~----~~~~~i~q~~le~~L~~~l~~~gv~--i~~~~~v~~v~~~~~----------~v~v~~~~g~----- 141 (488)
T PRK06834 83 DISDFPTRH----NYGLALWQNHIERILAEWVGELGVP--IYRGREVTGFAQDDT----------GVDVELSDGR----- 141 (488)
T ss_pred ccccCCCCC----CccccccHHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEcCC----------eEEEEECCCC-----
Confidence 111111000 1112235567888888888888876 999999999987643 5667665432
Q ss_pred EEEeCEEEEccCCCC
Q 044575 160 EEVFDAVVVATGHYS 174 (454)
Q Consensus 160 ~~~~d~vViAtG~~~ 174 (454)
++++|+||.|.|.+|
T Consensus 142 ~i~a~~vVgADG~~S 156 (488)
T PRK06834 142 TLRAQYLVGCDGGRS 156 (488)
T ss_pred EEEeCEEEEecCCCC
Confidence 789999999999554
No 107
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.10 E-value=5.8e-10 Score=96.41 Aligned_cols=144 Identities=25% Similarity=0.308 Sum_probs=85.9
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCc-ccccCCCCCCCCccccccccceecCCcc-ccccCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG-QWLYDPNTDQTEVHSSVYASLRLTSPRE-IMGYTDFPFVLK 89 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG-~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 89 (454)
..||+|+|||||||+||++|++.|++|+|||++..+|| .|.-- -+++.+..+.|.. ...--+.++..
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GG----------mlf~~iVv~~~a~~iL~e~gI~ye~- 98 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGG----------MLFNKIVVREEADEILDEFGIRYEE- 98 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccc----------cccceeeecchHHHHHHHhCCccee-
Confidence 46999999999999999999999999999999999876 46422 2233333322221 11111222221
Q ss_pred CCCCCCCC--CCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEE
Q 044575 90 KGRDVRRF--PGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVV 167 (454)
Q Consensus 90 ~~~~~~~~--~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vV 167 (454)
....| ....++..-+..-+-..+.+ |...+.|.+|-..++. .+.+--- .|+.....+-.-....+++++||
T Consensus 99 ---~e~g~~v~ds~e~~skl~~~a~~aGak--i~n~~~veDvi~r~~~-rVaGvVv-NWt~V~~~~lhvDPl~i~a~~Vv 171 (262)
T COG1635 99 ---EEDGYYVADSAEFASKLAARALDAGAK--IFNGVSVEDVIVRDDP-RVAGVVV-NWTPVQMAGLHVDPLTIRAKAVV 171 (262)
T ss_pred ---cCCceEEecHHHHHHHHHHHHHhcCce--eeecceEEEEEEecCC-ceEEEEE-ecchhhhcccccCcceeeEEEEE
Confidence 11111 23345555555555555655 7888889888766552 1111111 45544433221223478999999
Q ss_pred EccCCC
Q 044575 168 VATGHY 173 (454)
Q Consensus 168 iAtG~~ 173 (454)
-||||-
T Consensus 172 DaTGHd 177 (262)
T COG1635 172 DATGHD 177 (262)
T ss_pred eCCCCc
Confidence 999974
No 108
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.10 E-value=5.8e-10 Score=110.58 Aligned_cols=141 Identities=28% Similarity=0.433 Sum_probs=87.2
Q ss_pred EEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccc---c----cc--------ccceecCCccccc
Q 044575 16 CVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHS---S----VY--------ASLRLTSPREIMG 80 (454)
Q Consensus 16 vIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~---~----~~--------~~~~~~~~~~~~~ 80 (454)
+|||||+||++||..|++.|.+|+|+|+++.+|+.+...+......... . .| ..+....+...+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 6999999999999999999999999999999887654433211110000 0 00 0000000111111
Q ss_pred c-C--CCCCCCCCCCCCCCCC---CHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecC
Q 044575 81 Y-T--DFPFVLKKGRDVRRFP---GHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKK 154 (454)
Q Consensus 81 ~-~--~~~~~~~~~~~~~~~~---~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~ 154 (454)
+ . +.++... .....|| ...++.+.+.+.+++.++. ++++++|.++...+. .|.|++. +.
T Consensus 81 ~~~~~Gv~~~~~--~~g~~~p~~~~a~~v~~~L~~~l~~~gv~--i~~~~~V~~i~~~~~----------~~~v~~~-~~ 145 (400)
T TIGR00275 81 FFESLGLELKVE--EDGRVFPCSDSAADVLDALLNELKELGVE--ILTNSKVKSIKKDDN----------GFGVETS-GG 145 (400)
T ss_pred HHHHcCCeeEEe--cCCEeECCCCCHHHHHHHHHHHHHHCCCE--EEeCCEEEEEEecCC----------eEEEEEC-Cc
Confidence 0 0 1111110 0112232 3578888999999888887 899999999976432 6777663 22
Q ss_pred CCeEEEEEeCEEEEccCCCCCC
Q 044575 155 ADKVVEEVFDAVVVATGHYSYP 176 (454)
Q Consensus 155 ~~~~~~~~~d~vViAtG~~~~p 176 (454)
++.+|+||+|||.++.|
T Consensus 146 -----~i~ad~VIlAtG~~s~p 162 (400)
T TIGR00275 146 -----EYEADKVILATGGLSYP 162 (400)
T ss_pred -----EEEcCEEEECCCCcccC
Confidence 67899999999976654
No 109
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.09 E-value=1.8e-09 Score=111.52 Aligned_cols=153 Identities=23% Similarity=0.216 Sum_probs=88.6
Q ss_pred cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccc---ccCCCC---------CCCCcc-ccccccceecCCc
Q 044575 10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQW---LYDPNT---------DQTEVH-SSVYASLRLTSPR 76 (454)
Q Consensus 10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w---~~~~~~---------~~~~~~-~~~~~~~~~~~~~ 76 (454)
...+||+||||||+|+++|..|++.|++|+|||+.+.+.... ...+.. ...... .............
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 87 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAK 87 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCC
Confidence 456899999999999999999999999999999987653221 111000 000000 0000011110000
Q ss_pred --cccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeec
Q 044575 77 --EIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEK 153 (454)
Q Consensus 77 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~ 153 (454)
....+.. +.....+........+.++.++|.+.+.++ ++. ++++++|++++..++ .++|++.+.
T Consensus 88 g~~~~~~~~-~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~--v~~g~~v~~i~~~~~----------~v~v~~~~~ 154 (538)
T PRK06183 88 GRCLAEIAR-PSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVR--VRFGHEVTALTQDDD----------GVTVTLTDA 154 (538)
T ss_pred CCEEEEEcC-CCCCCCCCChhccCChHHHHHHHHHHHHhCCCcE--EEcCCEEEEEEEcCC----------eEEEEEEcC
Confidence 1111110 000000001112235567778888877765 666 999999999987654 667777642
Q ss_pred CCCeEEEEEeCEEEEccCCCCCC
Q 044575 154 KADKVVEEVFDAVVVATGHYSYP 176 (454)
Q Consensus 154 ~~~~~~~~~~d~vViAtG~~~~p 176 (454)
+ ++..++++|+||.|.|.+|.-
T Consensus 155 ~-G~~~~i~ad~vVgADG~~S~v 176 (538)
T PRK06183 155 D-GQRETVRARYVVGCDGANSFV 176 (538)
T ss_pred C-CCEEEEEEEEEEecCCCchhH
Confidence 2 334578999999999965543
No 110
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.09 E-value=8.2e-10 Score=109.55 Aligned_cols=148 Identities=19% Similarity=0.154 Sum_probs=82.7
Q ss_pred cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCc--ccccCCCC-------C--CCCc-cccccccceecCCcc
Q 044575 10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG--QWLYDPNT-------D--QTEV-HSSVYASLRLTSPRE 77 (454)
Q Consensus 10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG--~w~~~~~~-------~--~~~~-~~~~~~~~~~~~~~~ 77 (454)
++.+||+|||||++|+++|..|++.|++|+|||+.+..+. .+...+.. . .... ....+..+....+..
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g 84 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATG 84 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCC
Confidence 3457999999999999999999999999999999865421 11110000 0 0000 000011111100000
Q ss_pred -cccc--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecC
Q 044575 78 -IMGY--TDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKK 154 (454)
Q Consensus 78 -~~~~--~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~ 154 (454)
.... ..+..............++..+.+.+.+.+.+++.. .+++++|++++..++ .|+|++.++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~--~~~~~~v~~i~~~~~----------~~~v~~~~g~ 152 (388)
T PRK07494 85 RLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNI--TRFGDEAESVRPRED----------EVTVTLADGT 152 (388)
T ss_pred CCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCc--EEECCeeEEEEEcCC----------eEEEEECCCC
Confidence 0000 000000000000111245667777777777766433 477999999976543 6788776543
Q ss_pred CCeEEEEEeCEEEEccCCCC
Q 044575 155 ADKVVEEVFDAVVVATGHYS 174 (454)
Q Consensus 155 ~~~~~~~~~d~vViAtG~~~ 174 (454)
++++|.||.|+|.++
T Consensus 153 -----~~~a~~vI~AdG~~S 167 (388)
T PRK07494 153 -----TLSARLVVGADGRNS 167 (388)
T ss_pred -----EEEEeEEEEecCCCc
Confidence 789999999999654
No 111
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.08 E-value=6.4e-10 Score=108.62 Aligned_cols=148 Identities=23% Similarity=0.200 Sum_probs=85.0
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCc----ccccCCCC------C--CCCcccc---ccccceecCC--
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG----QWLYDPNT------D--QTEVHSS---VYASLRLTSP-- 75 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG----~w~~~~~~------~--~~~~~~~---~~~~~~~~~~-- 75 (454)
+||+|||||++|+++|..|++.|++|+|||+++.... ........ . ....... ..........
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~ 81 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGIS 81 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETT
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccC
Confidence 6899999999999999999999999999999876421 10000000 0 0000000 0000000000
Q ss_pred ------ccccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEE
Q 044575 76 ------REIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVK 149 (454)
Q Consensus 76 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~ 149 (454)
.......++.... .........+.++.+.|.+.+++.++. ++++++|.+++...+ ..++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~r~~l~~~L~~~~~~~gv~--i~~~~~v~~~~~d~~----------~~~~~ 147 (356)
T PF01494_consen 82 DSRIWVENPQIREDMEIDT--KGPYGHVIDRPELDRALREEAEERGVD--IRFGTRVVSIEQDDD----------GVTVV 147 (356)
T ss_dssp TSEEEEEEEEEEEECHSTS--GSSCEEEEEHHHHHHHHHHHHHHHTEE--EEESEEEEEEEEETT----------EEEEE
T ss_pred Cccceeeecccceeeeccc--cCCcchhhhHHHHHHhhhhhhhhhhhh--heeeeeccccccccc----------ccccc
Confidence 0000000000000 001112245678999999999988866 999999999887654 55666
Q ss_pred EeecCCCeEEEEEeCEEEEccCCCC
Q 044575 150 SKEKKADKVVEEVFDAVVVATGHYS 174 (454)
Q Consensus 150 ~~~~~~~~~~~~~~d~vViAtG~~~ 174 (454)
+.+..++...++++|.||.|.|.+|
T Consensus 148 ~~~~~~g~~~~i~adlvVgADG~~S 172 (356)
T PF01494_consen 148 VRDGEDGEEETIEADLVVGADGAHS 172 (356)
T ss_dssp EEETCTCEEEEEEESEEEE-SGTT-
T ss_pred cccccCCceeEEEEeeeecccCccc
Confidence 6666556667899999999999655
No 112
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.07 E-value=1.6e-09 Score=106.53 Aligned_cols=149 Identities=21% Similarity=0.310 Sum_probs=90.8
Q ss_pred cEEEECcChHHHHHHHHH--HHcCCcEEEEeeCCCC--Cc--ccccCCCCCCC--CccccccccceecCCccccccCCCC
Q 044575 14 NVCVIGAGPSGLVAAREL--RKEGHRVVVLEQNHDV--GG--QWLYDPNTDQT--EVHSSVYASLRLTSPREIMGYTDFP 85 (454)
Q Consensus 14 ~VvIIGaG~aGl~aA~~l--~~~g~~v~vie~~~~~--GG--~w~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (454)
||+|||||+||+++|.+| .+.|.+|+|||+++.. .. +|.+....... ..-...|.......+.......+++
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 799999999999999999 6679999999998776 22 34433221110 0111122222222221111111111
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCE
Q 044575 86 FVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDA 165 (454)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~ 165 (454)
+ .......+.+++.+.+...+ . +.++++|.+|+..+. .+.|++.++. +++++.
T Consensus 81 Y---------~~i~~~~f~~~l~~~~~~~~-~--~~~~~~V~~i~~~~~----------~~~v~~~~g~-----~i~a~~ 133 (374)
T PF05834_consen 81 Y---------CMIDRADFYEFLLERAAAGG-V--IRLNARVTSIEETGD----------GVLVVLADGR-----TIRARV 133 (374)
T ss_pred e---------EEEEHHHHHHHHHHHhhhCC-e--EEEccEEEEEEecCc----------eEEEEECCCC-----EEEeeE
Confidence 1 12567888888888777333 2 688999999987754 5677777765 899999
Q ss_pred EEEccCCCCCCCCCCCCCcCCcccee
Q 044575 166 VVVATGHYSYPRLPSIKGMDKWKRKQ 191 (454)
Q Consensus 166 vViAtG~~~~p~~p~i~G~~~~~~~~ 191 (454)
||-|+|. .+......+...|.|..
T Consensus 134 VvDa~g~--~~~~~~~~~~Q~f~G~~ 157 (374)
T PF05834_consen 134 VVDARGP--SSPKARPLGLQHFYGWE 157 (374)
T ss_pred EEECCCc--ccccccccccceeEEEE
Confidence 9999994 32222223444444433
No 113
>PRK08244 hypothetical protein; Provisional
Probab=99.06 E-value=2.5e-09 Score=109.45 Aligned_cols=144 Identities=20% Similarity=0.178 Sum_probs=83.8
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCc---ccccCCCCCC---------CCcc-ccccccceecCCcccc
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG---QWLYDPNTDQ---------TEVH-SSVYASLRLTSPREIM 79 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG---~w~~~~~~~~---------~~~~-~~~~~~~~~~~~~~~~ 79 (454)
+||+||||||+|+++|..|++.|++|+||||.+...- .....+..-. .... ................
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 82 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL 82 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence 7899999999999999999999999999999865310 0000000000 0000 0000000000000001
Q ss_pred ccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEE
Q 044575 80 GYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVV 159 (454)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 159 (454)
.+...+.. .......++..+.+.|.+.+++.++. ++++++|++++..++ ..++++.+.+ + ..
T Consensus 83 ~~~~~~~~----~~~~~~i~q~~le~~L~~~~~~~gv~--v~~~~~v~~i~~~~~----------~v~v~~~~~~-g-~~ 144 (493)
T PRK08244 83 DFSALDTS----SNYTLFLPQAETEKVLEEHARSLGVE--IFRGAEVLAVRQDGD----------GVEVVVRGPD-G-LR 144 (493)
T ss_pred CcccCCCC----CCcEEEecHHHHHHHHHHHHHHcCCe--EEeCCEEEEEEEcCC----------eEEEEEEeCC-c-cE
Confidence 11110000 01112245677888888888887876 899999999976543 5566665422 2 24
Q ss_pred EEEeCEEEEccCCCC
Q 044575 160 EEVFDAVVVATGHYS 174 (454)
Q Consensus 160 ~~~~d~vViAtG~~~ 174 (454)
++++|+||.|.|..|
T Consensus 145 ~i~a~~vVgADG~~S 159 (493)
T PRK08244 145 TLTSSYVVGADGAGS 159 (493)
T ss_pred EEEeCEEEECCCCCh
Confidence 689999999999655
No 114
>PLN02463 lycopene beta cyclase
Probab=99.05 E-value=1.3e-09 Score=108.85 Aligned_cols=137 Identities=20% Similarity=0.226 Sum_probs=82.5
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC-----CcccccCCCCCCCCccccccccceecCCccccccCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV-----GGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPF 86 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~-----GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (454)
.+||+||||||||+++|..|++.|++|+|+|+++.. .|.|...- . .....+.+....+.....+.+...
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l--~----~lgl~~~l~~~w~~~~v~~~~~~~ 101 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEF--E----ALGLLDCLDTTWPGAVVYIDDGKK 101 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHH--H----HCCcHHHHHhhCCCcEEEEeCCCC
Confidence 589999999999999999999999999999996532 23332100 0 000000000011111110100000
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEE
Q 044575 87 VLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAV 166 (454)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~v 166 (454)
.. .. ..-....+.++.+++.+.+...++. + ..++|.+|+..++ .+.|++.++. ++.+|.|
T Consensus 102 ~~-~~-~~y~~V~R~~L~~~Ll~~~~~~GV~--~-~~~~V~~I~~~~~----------~~~V~~~dG~-----~i~A~lV 161 (447)
T PLN02463 102 KD-LD-RPYGRVNRKKLKSKMLERCIANGVQ--F-HQAKVKKVVHEES----------KSLVVCDDGV-----KIQASLV 161 (447)
T ss_pred cc-cc-CcceeEEHHHHHHHHHHHHhhcCCE--E-EeeEEEEEEEcCC----------eEEEEECCCC-----EEEcCEE
Confidence 00 00 0111246778888888888777765 4 3578999887543 6778877654 7899999
Q ss_pred EEccCCCC
Q 044575 167 VVATGHYS 174 (454)
Q Consensus 167 ViAtG~~~ 174 (454)
|.|+|..+
T Consensus 162 I~AdG~~s 169 (447)
T PLN02463 162 LDATGFSR 169 (447)
T ss_pred EECcCCCc
Confidence 99999543
No 115
>PRK10015 oxidoreductase; Provisional
Probab=99.05 E-value=3.4e-09 Score=106.01 Aligned_cols=144 Identities=17% Similarity=0.189 Sum_probs=81.9
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCcccccccc------ceecCCccccccC---
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYAS------LRLTSPREIMGYT--- 82 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~--- 82 (454)
.+||+||||||||++||..|++.|++|+||||.+.+|..-...+......+. ...+. +........+.+.
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~-~l~~~~~~~~~i~~~~~~~~~~~~~~~ 83 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLE-AIIPGFAASAPVERKVTREKISFLTEE 83 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHH-HHcccccccCCccccccceeEEEEeCC
Confidence 5899999999999999999999999999999988764321100000000000 00000 0000111111110
Q ss_pred ---CCCCCCCCC--CCCCCC-CCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCC
Q 044575 83 ---DFPFVLKKG--RDVRRF-PGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKAD 156 (454)
Q Consensus 83 ---~~~~~~~~~--~~~~~~-~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~ 156 (454)
..++..... .....| ..+..+.++|.+.+++.++. +..+++|+.+...++ ++.....++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~--i~~~~~V~~i~~~~~----------~v~~v~~~~--- 148 (429)
T PRK10015 84 SAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQ--FIPGVRVDALVREGN----------KVTGVQAGD--- 148 (429)
T ss_pred CceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCE--EECCcEEEEEEEeCC----------EEEEEEeCC---
Confidence 001110000 001122 35677788888888888877 888999999876532 443222222
Q ss_pred eEEEEEeCEEEEccCCC
Q 044575 157 KVVEEVFDAVVVATGHY 173 (454)
Q Consensus 157 ~~~~~~~d~vViAtG~~ 173 (454)
.++.+|.||+|+|..
T Consensus 149 --~~i~A~~VI~AdG~~ 163 (429)
T PRK10015 149 --DILEANVVILADGVN 163 (429)
T ss_pred --eEEECCEEEEccCcc
Confidence 268999999999943
No 116
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.05 E-value=7.8e-10 Score=110.75 Aligned_cols=149 Identities=17% Similarity=0.155 Sum_probs=82.7
Q ss_pred cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCC-----cccccCCCCCCCCccccccccceec-CC--------
Q 044575 10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVG-----GQWLYDPNTDQTEVHSSVYASLRLT-SP-------- 75 (454)
Q Consensus 10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~G-----G~w~~~~~~~~~~~~~~~~~~~~~~-~~-------- 75 (454)
...+||+|||||++|+++|..|++.|++|+|||+.+... ......+..-..+-.-.+++.+... .+
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~ 95 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSD 95 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEe
Confidence 446899999999999999999999999999999987642 1111111000000000000000000 00
Q ss_pred ---ccccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEe
Q 044575 76 ---REIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSK 151 (454)
Q Consensus 76 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~ 151 (454)
.....+....... ........+..+.+.|.+.+... ++. ++++++|++++..++ .+.|++.
T Consensus 96 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~L~~~~~~~~~v~--i~~~~~v~~v~~~~~----------~~~v~~~ 160 (415)
T PRK07364 96 ADYPGVVKFQPTDLGT---EALGYVGEHQVLLEALQEFLQSCPNIT--WLCPAEVVSVEYQQD----------AATVTLE 160 (415)
T ss_pred CCCCceeeeccccCCC---CccEEEEecHHHHHHHHHHHhcCCCcE--EEcCCeeEEEEecCC----------eeEEEEc
Confidence 0001111000000 00011123456667776666554 455 788999999976543 5667765
Q ss_pred ecCCCeEEEEEeCEEEEccCCCCC
Q 044575 152 EKKADKVVEEVFDAVVVATGHYSY 175 (454)
Q Consensus 152 ~~~~~~~~~~~~d~vViAtG~~~~ 175 (454)
+++ ...++++|.||.|.|.+|.
T Consensus 161 ~~~--~~~~i~adlvIgADG~~S~ 182 (415)
T PRK07364 161 IEG--KQQTLQSKLVVAADGARSP 182 (415)
T ss_pred cCC--cceEEeeeEEEEeCCCCch
Confidence 422 2236899999999996553
No 117
>PRK06184 hypothetical protein; Provisional
Probab=99.05 E-value=2.7e-09 Score=109.42 Aligned_cols=149 Identities=16% Similarity=0.135 Sum_probs=83.4
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCC------------CCcc-ccccccceecCCcc-
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQ------------TEVH-SSVYASLRLTSPRE- 77 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~------------~~~~-~~~~~~~~~~~~~~- 77 (454)
.+||+||||||+|+++|..|++.|++|+|||+.+.+.-.-.-....+. .... ...+.......+..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 82 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGS 82 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCce
Confidence 479999999999999999999999999999998764211000000000 0000 00011111000000
Q ss_pred ccccCCCCCCCC-CCC--CCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecC
Q 044575 78 IMGYTDFPFVLK-KGR--DVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKK 154 (454)
Q Consensus 78 ~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~ 154 (454)
............ ... ......++..+.+.|.+.+.+.++. ++++++|++++..++ .+++++....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~--i~~~~~v~~i~~~~~----------~v~v~~~~~~ 150 (502)
T PRK06184 83 VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHR--VEFGCELVGFEQDAD----------GVTARVAGPA 150 (502)
T ss_pred EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCE--EEeCcEEEEEEEcCC----------cEEEEEEeCC
Confidence 000000000000 000 0111234566777788888777776 999999999986643 5566654322
Q ss_pred CCeEEEEEeCEEEEccCCCC
Q 044575 155 ADKVVEEVFDAVVVATGHYS 174 (454)
Q Consensus 155 ~~~~~~~~~d~vViAtG~~~ 174 (454)
...++++|+||.|+|.+|
T Consensus 151 --~~~~i~a~~vVgADG~~S 168 (502)
T PRK06184 151 --GEETVRARYLVGADGGRS 168 (502)
T ss_pred --CeEEEEeCEEEECCCCch
Confidence 123789999999999655
No 118
>PRK07045 putative monooxygenase; Reviewed
Probab=99.04 E-value=2.7e-09 Score=105.84 Aligned_cols=148 Identities=20% Similarity=0.220 Sum_probs=83.5
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC---CcccccCCCCCCC---------Ccc--ccccccceecCCc
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV---GGQWLYDPNTDQT---------EVH--SSVYASLRLTSPR 76 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~---GG~w~~~~~~~~~---------~~~--~~~~~~~~~~~~~ 76 (454)
..+||+||||||+|+++|..|++.|++|+|+|+.+.+ ++.-...++.... ... ......+......
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g 83 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDK 83 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCC
Confidence 3479999999999999999999999999999998864 1211111110000 000 0001111110000
Q ss_pred cccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCC
Q 044575 77 EIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKA 155 (454)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~ 155 (454)
.... .+++............++.++.+.+.+.+... ++. ++++++|++++..+++. .+.|+..++.
T Consensus 84 ~~~~--~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~--i~~~~~v~~i~~~~~~~--------~~~v~~~~g~- 150 (388)
T PRK07045 84 ELIA--SLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVR--LRFETSIERIERDADGT--------VTSVTLSDGE- 150 (388)
T ss_pred cEEE--EecCCccccCCceEEccHHHHHHHHHHHHhcCCCee--EEeCCEEEEEEECCCCc--------EEEEEeCCCC-
Confidence 0000 01111100001111245667777776665433 454 89999999998765431 3466665543
Q ss_pred CeEEEEEeCEEEEccCCCCC
Q 044575 156 DKVVEEVFDAVVVATGHYSY 175 (454)
Q Consensus 156 ~~~~~~~~d~vViAtG~~~~ 175 (454)
++.+|.||.|.|.+|.
T Consensus 151 ----~~~~~~vIgADG~~S~ 166 (388)
T PRK07045 151 ----RVAPTVLVGADGARSM 166 (388)
T ss_pred ----EEECCEEEECCCCChH
Confidence 7899999999996653
No 119
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.03 E-value=1.9e-09 Score=107.14 Aligned_cols=144 Identities=13% Similarity=0.117 Sum_probs=84.0
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCC----cc-cccCCCCCCC---Cccccccccc-----------e
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVG----GQ-WLYDPNTDQT---EVHSSVYASL-----------R 71 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~G----G~-w~~~~~~~~~---~~~~~~~~~~-----------~ 71 (454)
..+||+||||||+|+++|..|+++|++|+|||+.+... +. -......+.. +-.-.+++.+ .
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMR 84 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEE
Confidence 45899999999999999999999999999999976432 10 0000000000 0000011111 0
Q ss_pred ecCC--ccccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEE
Q 044575 72 LTSP--REIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVK 149 (454)
Q Consensus 72 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~ 149 (454)
.... .....+....... ........+..+.+.+.+.+++.++. +.++++|++++..++ .++|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~l~~~L~~~~~~~gv~--i~~~~~v~~i~~~~~----------~v~v~ 149 (392)
T PRK08773 85 VWDAGGGGELGFDADTLGR---EQLGWIVENDLLVDRLWAALHAAGVQ--LHCPARVVALEQDAD----------RVRLR 149 (392)
T ss_pred EEeCCCCceEEechhccCC---CcCEEEEEhHHHHHHHHHHHHhCCCE--EEcCCeEEEEEecCC----------eEEEE
Confidence 0000 0001111000000 00111234567788888888877776 889999999986543 67777
Q ss_pred EeecCCCeEEEEEeCEEEEccCCCC
Q 044575 150 SKEKKADKVVEEVFDAVVVATGHYS 174 (454)
Q Consensus 150 ~~~~~~~~~~~~~~d~vViAtG~~~ 174 (454)
+.++. ++.+|.||.|+|.++
T Consensus 150 ~~~g~-----~~~a~~vV~AdG~~S 169 (392)
T PRK08773 150 LDDGR-----RLEAALAIAADGAAS 169 (392)
T ss_pred ECCCC-----EEEeCEEEEecCCCc
Confidence 66543 689999999999544
No 120
>PRK06126 hypothetical protein; Provisional
Probab=99.03 E-value=6.2e-09 Score=107.89 Aligned_cols=152 Identities=15% Similarity=0.165 Sum_probs=85.0
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCC--Cc-cccccccce---------------e-
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQT--EV-HSSVYASLR---------------L- 72 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~--~~-~~~~~~~~~---------------~- 72 (454)
.++|+||||||+|+++|..|++.|++|+|||+.+.+.-.-.-....+.. .+ ...+++.+. .
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~ 86 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR 86 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence 5799999999999999999999999999999986432100000000000 00 000000000 0
Q ss_pred cCCcccccc--CCC----CCCCC-----CCCCCCCCCCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccC
Q 044575 73 TSPREIMGY--TDF----PFVLK-----KGRDVRRFPGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIG 140 (454)
Q Consensus 73 ~~~~~~~~~--~~~----~~~~~-----~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~ 140 (454)
.....+..+ ... ..+.. .........++..+.+.|.+.+.+. ++. ++++++|++++..++
T Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~--i~~~~~v~~i~~~~~------ 158 (545)
T PRK06126 87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVT--LRYGHRLTDFEQDAD------ 158 (545)
T ss_pred CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCce--EEeccEEEEEEECCC------
Confidence 000000000 000 00000 0000112245566777888877765 566 999999999987643
Q ss_pred CcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCCC
Q 044575 141 NDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSY 175 (454)
Q Consensus 141 ~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~~ 175 (454)
..++++.+..++...++.+|+||.|.|.+|.
T Consensus 159 ----~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 159 ----GVTATVEDLDGGESLTIRADYLVGCDGARSA 189 (545)
T ss_pred ----eEEEEEEECCCCcEEEEEEEEEEecCCcchH
Confidence 5566665533344567899999999996553
No 121
>PRK06185 hypothetical protein; Provisional
Probab=99.02 E-value=3.2e-09 Score=106.01 Aligned_cols=147 Identities=18% Similarity=0.230 Sum_probs=83.1
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCC-----cccccCC-----CCC-CCCcc---ccccccceecCCc
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVG-----GQWLYDP-----NTD-QTEVH---SSVYASLRLTSPR 76 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~G-----G~w~~~~-----~~~-~~~~~---~~~~~~~~~~~~~ 76 (454)
..+||+|||||++|+++|..|++.|++|+|+|+.+... ..+.... ... ...+. ......+......
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~ 84 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGG 84 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECC
Confidence 45899999999999999999999999999999976431 1110000 000 00000 0001111110011
Q ss_pred c---ccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEee
Q 044575 77 E---IMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKE 152 (454)
Q Consensus 77 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~ 152 (454)
. ...+...+.+. ....+.++.++.+.+.+.+.+. ++. +.++++|+++...++. ...|++..
T Consensus 85 ~~~~~~~~~~~~~~~----~~~~~v~~~~l~~~L~~~~~~~~~v~--i~~~~~v~~~~~~~~~---------v~~v~~~~ 149 (407)
T PRK06185 85 RTVTLADFSRLPTPY----PYIAMMPQWDFLDFLAEEASAYPNFT--LRMGAEVTGLIEEGGR---------VTGVRART 149 (407)
T ss_pred eEEEecchhhcCCCC----CcEEEeehHHHHHHHHHHHhhCCCcE--EEeCCEEEEEEEeCCE---------EEEEEEEc
Confidence 0 11111111110 1122356678888888877665 555 8889999999876432 22244433
Q ss_pred cCCCeEEEEEeCEEEEccCCCC
Q 044575 153 KKADKVVEEVFDAVVVATGHYS 174 (454)
Q Consensus 153 ~~~~~~~~~~~d~vViAtG~~~ 174 (454)
.+ + ..++.+|.||.|+|.++
T Consensus 150 ~~-g-~~~i~a~~vI~AdG~~S 169 (407)
T PRK06185 150 PD-G-PGEIRADLVVGADGRHS 169 (407)
T ss_pred CC-C-cEEEEeCEEEECCCCch
Confidence 21 1 23689999999999655
No 122
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.01 E-value=3.9e-09 Score=104.24 Aligned_cols=84 Identities=17% Similarity=0.071 Sum_probs=59.0
Q ss_pred EEEcCCCCHHHHH-HHHh----hhcCeEEEecccCCcCccc------hhhhc-cCCCeEEcCceeEEecC-CcE---EEe
Q 044575 209 VVVGNSLSGQDIS-MELV----EVAKEVHLSAKSLNISEGL------SKVIS-KHNNLHLHPQIDCLRED-GRV---TFV 272 (454)
Q Consensus 209 vVVG~G~sg~e~A-~~l~----~~~~~V~l~~r~~~~~~~~------~~~l~-~~~~i~~~~~v~~v~~~-~~v---~~~ 272 (454)
+|++.+.+|+|.+ ..++ ++|.+|+++.+.++..+.+ .+.+. ..+++..+..|.+++.+ +.+ ...
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~ 298 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGLRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTR 298 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEee
Confidence 7789999999999 5554 4699999998887764442 23332 23478888889888633 222 233
Q ss_pred CCC--EEeeceEEEccCcccCC
Q 044575 273 DGC--WVTADTILYCTGYSYSF 292 (454)
Q Consensus 273 dG~--~i~~D~vI~atG~~~~~ 292 (454)
+|+ .+++|.||+|||..++.
T Consensus 299 ~g~~~~i~AD~VVLAtGrf~s~ 320 (422)
T PRK05329 299 NHGDIPLRARHFVLATGSFFSG 320 (422)
T ss_pred CCceEEEECCEEEEeCCCcccC
Confidence 454 47799999999987553
No 123
>PRK07190 hypothetical protein; Provisional
Probab=99.01 E-value=3.6e-09 Score=107.41 Aligned_cols=146 Identities=18% Similarity=0.125 Sum_probs=83.0
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCC--Cc-ccccccccee----------cCCccc
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQT--EV-HSSVYASLRL----------TSPREI 78 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~--~~-~~~~~~~~~~----------~~~~~~ 78 (454)
.+||+||||||+|+++|..|++.|.+|+|||+.+.....-.-....+.. .+ ....++.+.. ......
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~ 84 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKF 84 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCce
Confidence 4799999999999999999999999999999987643110000000000 00 0000000000 000000
Q ss_pred cccCCCCCCCCCCCCC--CCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCC
Q 044575 79 MGYTDFPFVLKKGRDV--RRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKAD 156 (454)
Q Consensus 79 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~ 156 (454)
......-+....+... ....+...+.+.|.+.+.+.++. ++++++|++++..++ .+.+++.++.
T Consensus 85 i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~--v~~~~~v~~l~~~~~----------~v~v~~~~g~-- 150 (487)
T PRK07190 85 ISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAA--VKRNTSVVNIELNQA----------GCLTTLSNGE-- 150 (487)
T ss_pred EeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcCC----------eeEEEECCCc--
Confidence 0000000000000001 11234567777888888888877 999999999987654 4556554432
Q ss_pred eEEEEEeCEEEEccCCCC
Q 044575 157 KVVEEVFDAVVVATGHYS 174 (454)
Q Consensus 157 ~~~~~~~d~vViAtG~~~ 174 (454)
++++++||.|+|.+|
T Consensus 151 ---~v~a~~vVgADG~~S 165 (487)
T PRK07190 151 ---RIQSRYVIGADGSRS 165 (487)
T ss_pred ---EEEeCEEEECCCCCH
Confidence 789999999999554
No 124
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.01 E-value=2.8e-09 Score=95.10 Aligned_cols=137 Identities=27% Similarity=0.383 Sum_probs=80.2
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCcccccc-----------------ccceecCC
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVY-----------------ASLRLTSP 75 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 75 (454)
.+|+|||+|++|++||..|++.|.+|+||||...+||..-.........-+...| ..+..--.
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~ 81 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWT 81 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeecc
Confidence 4699999999999999999999999999999999998754332211100000000 01111111
Q ss_pred ccccccCCCCCCCCCCCCC--CCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeec
Q 044575 76 REIMGYTDFPFVLKKGRDV--RRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEK 153 (454)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~ 153 (454)
..+..|.+-..+.. +.+. ..-|.-..+.+|+.. ++. +.++++|+.|.+.++ .|++.++++
T Consensus 82 ~~~~~~~~~~~~~~-~d~~pyvg~pgmsalak~LAt-----dL~--V~~~~rVt~v~~~~~----------~W~l~~~~g 143 (331)
T COG3380 82 PAVWTFTGDGSPPR-GDEDPYVGEPGMSALAKFLAT-----DLT--VVLETRVTEVARTDN----------DWTLHTDDG 143 (331)
T ss_pred ccccccccCCCCCC-CCCCccccCcchHHHHHHHhc-----cch--hhhhhhhhhheecCC----------eeEEEecCC
Confidence 11122221111110 0011 111233334443322 444 789999999988743 899999765
Q ss_pred CCCeEEEEEeCEEEEccC
Q 044575 154 KADKVVEEVFDAVVVATG 171 (454)
Q Consensus 154 ~~~~~~~~~~d~vViAtG 171 (454)
.. ...+|.||||.=
T Consensus 144 ~~----~~~~d~vvla~P 157 (331)
T COG3380 144 TR----HTQFDDVVLAIP 157 (331)
T ss_pred Cc----ccccceEEEecC
Confidence 41 567999999986
No 125
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.00 E-value=5.9e-09 Score=103.44 Aligned_cols=147 Identities=21% Similarity=0.218 Sum_probs=82.3
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCcc---------ccccccceecCCccccccCC
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVH---------SSVYASLRLTSPREIMGYTD 83 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 83 (454)
+||+||||||||++||..|++.|++|+|+|+....+..|. .+.+...+. ...........|..... +
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg--~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~--~ 76 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCG--GAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAV--D 76 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCcc--ccccHhhHhhccCchhHHHhhhceeEEecCCceEE--E
Confidence 4899999999999999999999999999999765443321 111111000 00011111111111000 0
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecC----CCeEE
Q 044575 84 FPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKK----ADKVV 159 (454)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~ 159 (454)
+.... ..........+..+.++|.+.+.+.++. +..+ ++.++...... .. .+.|++.... .++..
T Consensus 77 ~~~~~-~~~~~~~~v~R~~~d~~L~~~a~~~G~~--v~~~-~~~~i~~~~~~------~~-~~~v~~~~~~~~~~~g~~~ 145 (398)
T TIGR02028 77 IGRTL-KEHEYIGMLRREVLDSFLRRRAADAGAT--LING-LVTKLSLPADA------DD-PYTLHYISSDSGGPSGTRC 145 (398)
T ss_pred eccCC-CCCCceeeeeHHHHHHHHHHHHHHCCcE--EEcc-eEEEEEeccCC------Cc-eEEEEEeeccccccCCCcc
Confidence 00000 0001111257788889999999988887 6555 46666532211 01 5667654221 12234
Q ss_pred EEEeCEEEEccCCCC
Q 044575 160 EEVFDAVVVATGHYS 174 (454)
Q Consensus 160 ~~~~d~vViAtG~~~ 174 (454)
++++|.||.|+|..|
T Consensus 146 ~i~a~~VIgADG~~S 160 (398)
T TIGR02028 146 TLEVDAVIGADGANS 160 (398)
T ss_pred EEEeCEEEECCCcch
Confidence 789999999999433
No 126
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.00 E-value=1.2e-09 Score=108.32 Aligned_cols=141 Identities=12% Similarity=0.096 Sum_probs=82.8
Q ss_pred cEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCc--------ccccCCCCCC---------CCc--cccccccceecC
Q 044575 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG--------QWLYDPNTDQ---------TEV--HSSVYASLRLTS 74 (454)
Q Consensus 14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG--------~w~~~~~~~~---------~~~--~~~~~~~~~~~~ 74 (454)
||+|||||+||+++|..|++.|++|+|+|+.+.++- .....+..-. ... ....+..+....
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 699999999999999999999999999999976421 1111100000 000 000011111111
Q ss_pred Cc--cccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEe
Q 044575 75 PR--EIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFG-LREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSK 151 (454)
Q Consensus 75 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~ 151 (454)
.. ..+.+ +.............++.++.+.|.+.+.+.+ +. ++++++|++++..++ .+.++..
T Consensus 81 ~~~~~~~~~---~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~--v~~~~~v~~i~~~~~----------~~~v~~~ 145 (385)
T TIGR01988 81 GGSFGALHF---DADEIGLEALGYVVENRVLQQALWERLQEYPNVT--LLCPARVVELPRHSD----------HVELTLD 145 (385)
T ss_pred CCCCceEEe---chhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcE--EecCCeEEEEEecCC----------eeEEEEC
Confidence 10 00011 1000000001112456778888888777765 55 889999999986543 6777776
Q ss_pred ecCCCeEEEEEeCEEEEccCCCC
Q 044575 152 EKKADKVVEEVFDAVVVATGHYS 174 (454)
Q Consensus 152 ~~~~~~~~~~~~d~vViAtG~~~ 174 (454)
++. ++.+|.||.|.|.++
T Consensus 146 ~g~-----~~~~~~vi~adG~~S 163 (385)
T TIGR01988 146 DGQ-----QLRARLLVGADGANS 163 (385)
T ss_pred CCC-----EEEeeEEEEeCCCCC
Confidence 554 689999999999655
No 127
>PLN02697 lycopene epsilon cyclase
Probab=98.99 E-value=3.4e-09 Score=107.61 Aligned_cols=135 Identities=19% Similarity=0.204 Sum_probs=80.8
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCC---cccccCCCCCCCCccccccccceecCCccccccCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVG---GQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVL 88 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~G---G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (454)
.+||+||||||||+++|..|++.|++|+|+|+...+. |.|...- ... ...+.+....+.....+.+.....
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l--~~l----gl~~~i~~~w~~~~v~~~~~~~~~ 181 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEF--KDL----GLEDCIEHVWRDTIVYLDDDKPIM 181 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHH--Hhc----CcHHHHHhhcCCcEEEecCCceee
Confidence 5899999999999999999999999999999864432 3443110 000 000000000000001011100000
Q ss_pred CCCCCCCC--CCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEE-EEeecCCCeEEEEEeCE
Q 044575 89 KKGRDVRR--FPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVV-KSKEKKADKVVEEVFDA 165 (454)
Q Consensus 89 ~~~~~~~~--~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~d~ 165 (454)
.... ...+..+.+.+.+.+.+.++. + ++++|++|...++ .+.+ ...++. ++.+|.
T Consensus 182 ----~~~~Yg~V~R~~L~~~Ll~~a~~~GV~--~-~~~~V~~I~~~~~----------~~~vv~~~dG~-----~i~A~l 239 (529)
T PLN02697 182 ----IGRAYGRVSRTLLHEELLRRCVESGVS--Y-LSSKVDRITEASD----------GLRLVACEDGR-----VIPCRL 239 (529)
T ss_pred ----ccCcccEEcHHHHHHHHHHHHHhcCCE--E-EeeEEEEEEEcCC----------cEEEEEEcCCc-----EEECCE
Confidence 0111 256778888888888777775 4 6789999876543 4443 333333 789999
Q ss_pred EEEccCCCC
Q 044575 166 VVVATGHYS 174 (454)
Q Consensus 166 vViAtG~~~ 174 (454)
||+|+|..+
T Consensus 240 VI~AdG~~S 248 (529)
T PLN02697 240 ATVASGAAS 248 (529)
T ss_pred EEECCCcCh
Confidence 999999755
No 128
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.99 E-value=3.3e-09 Score=105.74 Aligned_cols=140 Identities=19% Similarity=0.226 Sum_probs=83.4
Q ss_pred CcEEEECcChHHHHHHHHHHHcC--CcEEEEeeCCCCCcccccCCCC----CC-----------CCcc--ccccccceec
Q 044575 13 KNVCVIGAGPSGLVAARELRKEG--HRVVVLEQNHDVGGQWLYDPNT----DQ-----------TEVH--SSVYASLRLT 73 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g--~~v~vie~~~~~GG~w~~~~~~----~~-----------~~~~--~~~~~~~~~~ 73 (454)
+||+||||||+|+++|..|++.| ++|+|||+.+.... ...++. +. +.+. ......+...
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~--~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 79 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAW--SRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVIT 79 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccC--CCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEE
Confidence 78999999999999999999985 99999999764210 000000 00 0000 0000000000
Q ss_pred CCc-------cccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcE
Q 044575 74 SPR-------EIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKW 146 (454)
Q Consensus 74 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~ 146 (454)
... ..+.+.. ....+........+.++.+.|.+.+.+.++. ++++++|++++..++ .+
T Consensus 80 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~~----------~v 144 (403)
T PRK07333 80 DSRTSDPVRPVFLTFEG---EVEPGEPFAHMVENRVLINALRKRAEALGID--LREATSVTDFETRDE----------GV 144 (403)
T ss_pred eCCCCCCCccceEEecc---cccCCCccEEEeEhHHHHHHHHHHHHhCCCE--EEcCCEEEEEEEcCC----------EE
Confidence 000 0011100 0000001112356788889998888887877 889999999986543 67
Q ss_pred EEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575 147 VVKSKEKKADKVVEEVFDAVVVATGHYS 174 (454)
Q Consensus 147 ~v~~~~~~~~~~~~~~~d~vViAtG~~~ 174 (454)
.|++.++. ++.+|.||.|+|.++
T Consensus 145 ~v~~~~g~-----~~~ad~vI~AdG~~S 167 (403)
T PRK07333 145 TVTLSDGS-----VLEARLLVAADGARS 167 (403)
T ss_pred EEEECCCC-----EEEeCEEEEcCCCCh
Confidence 77766543 689999999999544
No 129
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.99 E-value=3.2e-10 Score=98.70 Aligned_cols=144 Identities=24% Similarity=0.304 Sum_probs=74.3
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcc-cccCCCCCCCCccccccccceecCCcc-ccccCCCCCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ-WLYDPNTDQTEVHSSVYASLRLTSPRE-IMGYTDFPFVL 88 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~-w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 88 (454)
..+||+||||||+||+||+.|++.|++|++||++..+||. |.-- .++.....+.+.. +..--+.++..
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg----------~lf~~iVVq~~a~~iL~elgi~y~~ 85 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGG----------MLFNKIVVQEEADEILDELGIPYEE 85 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-C----------TT---EEEETTTHHHHHHHT---EE
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccc----------cccchhhhhhhHHHHHHhCCceeEE
Confidence 3589999999999999999999999999999999999864 5422 2333333332211 11111222221
Q ss_pred CCCCCCC-CC-CCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEE
Q 044575 89 KKGRDVR-RF-PGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAV 166 (454)
Q Consensus 89 ~~~~~~~-~~-~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~v 166 (454)
... .| ....++...|-.-+-+-+.. |...+.|+++-..++. .+.+--- .|+.....+-.-....+++++|
T Consensus 86 ----~~~g~~v~d~~~~~s~L~s~a~~aGak--ifn~~~vEDvi~r~~~-rV~GvVi-NWt~V~~~glHvDPl~i~ak~V 157 (230)
T PF01946_consen 86 ----YGDGYYVADSVEFTSTLASKAIDAGAK--IFNLTSVEDVIVREDD-RVAGVVI-NWTPVEMAGLHVDPLTIRAKVV 157 (230)
T ss_dssp -----SSEEEES-HHHHHHHHHHHHHTTTEE--EEETEEEEEEEEECSC-EEEEEEE-EEHHHHTT--T-B-EEEEESEE
T ss_pred ----eCCeEEEEcHHHHHHHHHHHHhcCCCE--EEeeeeeeeeEEEcCC-eEEEEEE-EehHHhHhhcCCCcceEEEeEE
Confidence 111 11 24456666665555555665 7778889888766531 1110000 2221111111112358999999
Q ss_pred EEccCC
Q 044575 167 VVATGH 172 (454)
Q Consensus 167 ViAtG~ 172 (454)
|-||||
T Consensus 158 iDaTGH 163 (230)
T PF01946_consen 158 IDATGH 163 (230)
T ss_dssp EE---S
T ss_pred EeCCCC
Confidence 999997
No 130
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.99 E-value=3.1e-09 Score=105.76 Aligned_cols=148 Identities=20% Similarity=0.134 Sum_probs=82.6
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcc---cccCCCCCCCCccccccccceec-CCccccccC-----
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ---WLYDPNTDQTEVHSSVYASLRLT-SPREIMGYT----- 82 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~---w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----- 82 (454)
..+|+|||||++|+++|..|++.|++|+|+|+.+.++-. ....+..-..+-.-..++.+... .+...+.+.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA 83 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence 478999999999999999999999999999998765421 00000000000000000000000 000000000
Q ss_pred ----CCCCCCCC--CCCCC-CCCCHHHHHHHHHHHHHHhC-CCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecC
Q 044575 83 ----DFPFVLKK--GRDVR-RFPGHKELWLYLKDFCQRFG-LREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKK 154 (454)
Q Consensus 83 ----~~~~~~~~--~~~~~-~~~~~~~~~~yl~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~ 154 (454)
..+..... ....+ ....+.++.+.|.+.+.+.+ +. ++++++|++++..++ .++++..++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~--~~~~~~v~~i~~~~~----------~v~v~~~~g~ 151 (396)
T PRK08163 84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVE--FRTSTHVVGIEQDGD----------GVTVFDQQGN 151 (396)
T ss_pred CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcE--EEeCCEEEEEecCCC----------ceEEEEcCCC
Confidence 00100000 00001 12456777777777776554 54 788999999986432 5667766543
Q ss_pred CCeEEEEEeCEEEEccCCCCCC
Q 044575 155 ADKVVEEVFDAVVVATGHYSYP 176 (454)
Q Consensus 155 ~~~~~~~~~d~vViAtG~~~~p 176 (454)
++.+|.||.|.|.++..
T Consensus 152 -----~~~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 152 -----RWTGDALIGCDGVKSVV 168 (396)
T ss_pred -----EEecCEEEECCCcChHH
Confidence 68999999999965544
No 131
>PRK07538 hypothetical protein; Provisional
Probab=98.98 E-value=1.9e-08 Score=100.67 Aligned_cols=152 Identities=22% Similarity=0.164 Sum_probs=83.1
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCC---cccccCCCCCCCCccccccccc----------eecCCcccc
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVG---GQWLYDPNTDQTEVHSSVYASL----------RLTSPREIM 79 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~G---G~w~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ 79 (454)
+||+|||||++|+++|..|++.|++|+|||+.+.+. ......+..-..+-.-.+++.+ ....+....
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~ 80 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQR 80 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCE
Confidence 379999999999999999999999999999987542 1111111000000000001110 000000000
Q ss_pred ccCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHH-hCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCe
Q 044575 80 GYTDFPFVLKKGRDVRR-FPGHKELWLYLKDFCQR-FGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADK 157 (454)
Q Consensus 80 ~~~~~~~~~~~~~~~~~-~~~~~~~~~yl~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 157 (454)
-+. .+.....+...+. ..++.++.+.|.+.+.+ .+. ..++++++|++++..++ ...+.+.++..+.
T Consensus 81 ~~~-~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~-~~i~~~~~v~~~~~~~~----------~~~~~~~~~~~g~ 148 (413)
T PRK07538 81 IWS-EPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGP-DAVRTGHRVVGFEQDAD----------VTVVFLGDRAGGD 148 (413)
T ss_pred Eee-ccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCC-cEEEcCCEEEEEEecCC----------ceEEEEeccCCCc
Confidence 000 0000000001111 24677777777766543 342 23899999999986543 3445555443334
Q ss_pred EEEEEeCEEEEccCCCCCC
Q 044575 158 VVEEVFDAVVVATGHYSYP 176 (454)
Q Consensus 158 ~~~~~~d~vViAtG~~~~p 176 (454)
..++++|.||-|.|.+|.-
T Consensus 149 ~~~~~adlvIgADG~~S~v 167 (413)
T PRK07538 149 LVSVRGDVLIGADGIHSAV 167 (413)
T ss_pred cceEEeeEEEECCCCCHHH
Confidence 4578999999999976643
No 132
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.97 E-value=4e-09 Score=104.71 Aligned_cols=144 Identities=19% Similarity=0.188 Sum_probs=81.1
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC----CcccccC-CCCCC-------------CCcc--ccccccc
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV----GGQWLYD-PNTDQ-------------TEVH--SSVYASL 70 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~----GG~w~~~-~~~~~-------------~~~~--~~~~~~~ 70 (454)
+.+||+|||||++|+++|..|++.|++|+|||+.+.. ++.+... ..... .... ...+..+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 83 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRL 83 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceE
Confidence 4589999999999999999999999999999997531 1100000 00000 0000 0000010
Q ss_pred eec-CCccccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEE
Q 044575 71 RLT-SPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVV 148 (454)
Q Consensus 71 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v 148 (454)
... .......+....... ........+..+.+.|.+.++.. ++. +.++++|+++...++ .|.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~---~~~g~~i~r~~l~~~L~~~~~~~~gv~--i~~~~~v~~i~~~~~----------~~~v 148 (391)
T PRK08020 84 ETWEWETAHVVFDAAELKL---PELGYMVENRVLQLALWQALEAHPNVT--LRCPASLQALQRDDD----------GWEL 148 (391)
T ss_pred EEEeCCCCeEEecccccCC---CccEEEEEcHHHHHHHHHHHHcCCCcE--EEcCCeeEEEEEcCC----------eEEE
Confidence 000 000001111000000 00001134567777777766655 655 778999999876543 6778
Q ss_pred EEeecCCCeEEEEEeCEEEEccCCCC
Q 044575 149 KSKEKKADKVVEEVFDAVVVATGHYS 174 (454)
Q Consensus 149 ~~~~~~~~~~~~~~~d~vViAtG~~~ 174 (454)
++.++. ++++|.||.|.|.+|
T Consensus 149 ~~~~g~-----~~~a~~vI~AdG~~S 169 (391)
T PRK08020 149 TLADGE-----EIQAKLVIGADGANS 169 (391)
T ss_pred EECCCC-----EEEeCEEEEeCCCCc
Confidence 776553 789999999999655
No 133
>PRK08013 oxidoreductase; Provisional
Probab=98.96 E-value=7.5e-09 Score=103.03 Aligned_cols=147 Identities=20% Similarity=0.123 Sum_probs=83.5
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCc---c-cccC--CCCCCC---Cccccccccceec--CCccccc
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG---Q-WLYD--PNTDQT---EVHSSVYASLRLT--SPREIMG 80 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG---~-w~~~--~~~~~~---~~~~~~~~~~~~~--~~~~~~~ 80 (454)
.+||+||||||+|+++|..|++.|++|+|||+.+.+.- . .... ...+.. +-.-.+++.+... .+...+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~ 82 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME 82 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence 47999999999999999999999999999999875321 0 0000 000000 0000011111000 0000000
Q ss_pred c------CCCCCCCC-CCCCC-CCCCCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEe
Q 044575 81 Y------TDFPFVLK-KGRDV-RRFPGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSK 151 (454)
Q Consensus 81 ~------~~~~~~~~-~~~~~-~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~ 151 (454)
+ ....+... .+... .....+..+.+.|.+.+... ++. ++++++|++++..++ ..+|++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~--i~~~~~v~~i~~~~~----------~v~v~~~ 150 (400)
T PRK08013 83 VWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDIT--LLAPAELQQVAWGEN----------EAFLTLK 150 (400)
T ss_pred EEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcE--EEcCCeeEEEEecCC----------eEEEEEc
Confidence 0 00001100 00000 11245677778887777665 455 889999999976543 5667766
Q ss_pred ecCCCeEEEEEeCEEEEccCCCCC
Q 044575 152 EKKADKVVEEVFDAVVVATGHYSY 175 (454)
Q Consensus 152 ~~~~~~~~~~~~d~vViAtG~~~~ 175 (454)
++. ++++|.||-|.|.+|.
T Consensus 151 ~g~-----~i~a~lvVgADG~~S~ 169 (400)
T PRK08013 151 DGS-----MLTARLVVGADGANSW 169 (400)
T ss_pred CCC-----EEEeeEEEEeCCCCcH
Confidence 554 7899999999996553
No 134
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.95 E-value=8e-09 Score=103.07 Aligned_cols=146 Identities=16% Similarity=0.199 Sum_probs=81.4
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccc----ccCCC----CCCC---Ccccccccccee--cCCcccc
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQW----LYDPN----TDQT---EVHSSVYASLRL--TSPREIM 79 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w----~~~~~----~~~~---~~~~~~~~~~~~--~~~~~~~ 79 (454)
+||+|||||++|+++|..|++.|++|+|||+.+...+.. ...+. .+.. +-.-.+++.+.. ..+...+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~ 82 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEM 82 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeE
Confidence 699999999999999999999999999999976211100 00000 0000 000001111110 0010000
Q ss_pred ccC------CCCCCCCC-CC-CCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEe
Q 044575 80 GYT------DFPFVLKK-GR-DVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSK 151 (454)
Q Consensus 80 ~~~------~~~~~~~~-~~-~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~ 151 (454)
.+. ...+.... .. .......+..+.+.+.+.+.+.++. ++++++|++++..++ .|+|++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~--v~~~~~v~~i~~~~~----------~v~v~~~ 150 (405)
T PRK05714 83 QVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIG--LLANARLEQMRRSGD----------DWLLTLA 150 (405)
T ss_pred EEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCE--EEcCCEEEEEEEcCC----------eEEEEEC
Confidence 000 00011000 00 0011234556666666666666665 888999999986543 6778776
Q ss_pred ecCCCeEEEEEeCEEEEccCCCCC
Q 044575 152 EKKADKVVEEVFDAVVVATGHYSY 175 (454)
Q Consensus 152 ~~~~~~~~~~~~d~vViAtG~~~~ 175 (454)
++. ++.+|.||.|.|.+|.
T Consensus 151 ~g~-----~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 151 DGR-----QLRAPLVVAADGANSA 169 (405)
T ss_pred CCC-----EEEeCEEEEecCCCch
Confidence 654 7899999999996654
No 135
>PRK11445 putative oxidoreductase; Provisional
Probab=98.95 E-value=2.2e-08 Score=97.86 Aligned_cols=146 Identities=18% Similarity=0.214 Sum_probs=79.0
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCC---C---Ccc-cccc-ccceecCCccccccCCC
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQ---T---EVH-SSVY-ASLRLTSPREIMGYTDF 84 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~---~---~~~-~~~~-~~~~~~~~~~~~~~~~~ 84 (454)
+||+||||||||+++|..|++. ++|+|+|+.+..+-.-...+|... . .+. -... .......+. .+.....
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~-~~~~~~~ 79 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQ-IFAVKTI 79 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccc-cceeeEe
Confidence 6999999999999999999999 999999998753200000011100 0 000 0000 000000000 0000000
Q ss_pred CCCCC-CCCCCCC--CCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEE
Q 044575 85 PFVLK-KGRDVRR--FPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEE 161 (454)
Q Consensus 85 ~~~~~-~~~~~~~--~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 161 (454)
.+... ....... -..+.++.+.+.+.. ..++. +++++.|.+++..++ .|.|+.... +...++
T Consensus 80 ~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~-~~gv~--v~~~~~v~~i~~~~~----------~~~v~~~~~--g~~~~i 144 (351)
T PRK11445 80 DLANSLTRNYQRSYINIDRHKFDLWLKSLI-PASVE--VYHNSLCRKIWREDD----------GYHVIFRAD--GWEQHI 144 (351)
T ss_pred cccccchhhcCCCcccccHHHHHHHHHHHH-hcCCE--EEcCCEEEEEEEcCC----------EEEEEEecC--CcEEEE
Confidence 00000 0000111 256677777777643 44555 888999999986543 677776432 223368
Q ss_pred EeCEEEEccCCCCC
Q 044575 162 VFDAVVVATGHYSY 175 (454)
Q Consensus 162 ~~d~vViAtG~~~~ 175 (454)
++|+||.|+|..|.
T Consensus 145 ~a~~vV~AdG~~S~ 158 (351)
T PRK11445 145 TARYLVGADGANSM 158 (351)
T ss_pred EeCEEEECCCCCcH
Confidence 99999999996553
No 136
>PRK09126 hypothetical protein; Provisional
Probab=98.95 E-value=2.8e-09 Score=105.88 Aligned_cols=34 Identities=38% Similarity=0.681 Sum_probs=32.5
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD 46 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~ 46 (454)
+||+||||||+|+++|..|++.|++|+|+|+.+.
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 7899999999999999999999999999999875
No 137
>PRK07588 hypothetical protein; Provisional
Probab=98.95 E-value=4.8e-09 Score=104.18 Aligned_cols=145 Identities=18% Similarity=0.098 Sum_probs=81.2
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC---CcccccCCCCCC---------CCc-cccccccceecCCc--c
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV---GGQWLYDPNTDQ---------TEV-HSSVYASLRLTSPR--E 77 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~---GG~w~~~~~~~~---------~~~-~~~~~~~~~~~~~~--~ 77 (454)
.||+|||||++|+++|..|++.|++|+|+|+.+.. |..|...+..-. ... .......+...... .
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~ 80 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRR 80 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCE
Confidence 37999999999999999999999999999998754 222222111000 000 00001111110000 0
Q ss_pred ccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCe
Q 044575 78 IMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADK 157 (454)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 157 (454)
...+....+....+ ......++.++.+.|.+.... ++. ++++++|++++..++ .++|++.++.
T Consensus 81 ~~~~~~~~~~~~~g-~~~~~i~r~~l~~~L~~~~~~-~v~--i~~~~~v~~i~~~~~----------~v~v~~~~g~--- 143 (391)
T PRK07588 81 KADLNVDSFRRMVG-DDFTSLPRGDLAAAIYTAIDG-QVE--TIFDDSIATIDEHRD----------GVRVTFERGT--- 143 (391)
T ss_pred EEEecHHHccccCC-CceEEEEHHHHHHHHHHhhhc-CeE--EEeCCEEeEEEECCC----------eEEEEECCCC---
Confidence 01111000000000 000124556666666554332 344 899999999987643 6778877654
Q ss_pred EEEEEeCEEEEccCCCCCC
Q 044575 158 VVEEVFDAVVVATGHYSYP 176 (454)
Q Consensus 158 ~~~~~~d~vViAtG~~~~p 176 (454)
++.+|.||.|.|.+|.-
T Consensus 144 --~~~~d~vIgADG~~S~v 160 (391)
T PRK07588 144 --PRDFDLVIGADGLHSHV 160 (391)
T ss_pred --EEEeCEEEECCCCCccc
Confidence 67899999999965543
No 138
>PRK06753 hypothetical protein; Provisional
Probab=98.95 E-value=5.9e-09 Score=102.85 Aligned_cols=139 Identities=21% Similarity=0.227 Sum_probs=80.4
Q ss_pred cEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcc---cccCCCCCCC-----Cc-----cccccccceecCCccccc
Q 044575 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ---WLYDPNTDQT-----EV-----HSSVYASLRLTSPREIMG 80 (454)
Q Consensus 14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~---w~~~~~~~~~-----~~-----~~~~~~~~~~~~~~~~~~ 80 (454)
+|+|||||++|+++|..|++.|++|+|+|+++.+.-. ....+..-.. .. .......+....+... .
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~-~ 80 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGT-L 80 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCC-E
Confidence 7999999999999999999999999999998865311 1100000000 00 0000011111111000 0
Q ss_pred cCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEE
Q 044575 81 YTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVE 160 (454)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 160 (454)
+...++.. + ......++..+.+.|.+.+.. . .++++++|++|+..++ .++|++.++. +
T Consensus 81 ~~~~~~~~--~-~~~~~i~R~~l~~~L~~~~~~--~--~i~~~~~v~~i~~~~~----------~v~v~~~~g~-----~ 138 (373)
T PRK06753 81 LNKVKLKS--N-TLNVTLHRQTLIDIIKSYVKE--D--AIFTGKEVTKIENETD----------KVTIHFADGE-----S 138 (373)
T ss_pred Eeeccccc--C-CccccccHHHHHHHHHHhCCC--c--eEEECCEEEEEEecCC----------cEEEEECCCC-----E
Confidence 00111110 0 111224667777777665542 2 3889999999986533 6778776654 6
Q ss_pred EEeCEEEEccCCCCC
Q 044575 161 EVFDAVVVATGHYSY 175 (454)
Q Consensus 161 ~~~d~vViAtG~~~~ 175 (454)
+.+|.||.|.|.+|.
T Consensus 139 ~~~~~vigadG~~S~ 153 (373)
T PRK06753 139 EAFDLCIGADGIHSK 153 (373)
T ss_pred EecCEEEECCCcchH
Confidence 799999999996553
No 139
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.94 E-value=1.5e-08 Score=76.09 Aligned_cols=71 Identities=23% Similarity=0.301 Sum_probs=60.6
Q ss_pred cEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCCCC
Q 044575 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGRD 93 (454)
Q Consensus 14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (454)
+|+|||||+.|+.+|..|++.|.+|+++++++.+...
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~------------------------------------------- 37 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPG------------------------------------------- 37 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTT-------------------------------------------
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhh-------------------------------------------
Confidence 5899999999999999999999999999998754211
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCC
Q 044575 94 VRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDC 134 (454)
Q Consensus 94 ~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~ 134 (454)
-.+++..++.+..++.++. +++++.|.+++..++
T Consensus 38 -----~~~~~~~~~~~~l~~~gV~--v~~~~~v~~i~~~~~ 71 (80)
T PF00070_consen 38 -----FDPDAAKILEEYLRKRGVE--VHTNTKVKEIEKDGD 71 (80)
T ss_dssp -----SSHHHHHHHHHHHHHTTEE--EEESEEEEEEEEETT
T ss_pred -----cCHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEeCC
Confidence 1167888889999988988 999999999998764
No 140
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.94 E-value=1e-08 Score=101.78 Aligned_cols=144 Identities=19% Similarity=0.095 Sum_probs=81.2
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCc---ccccCCC--CCCC--Ccc-cccccccee--cCCcccccc
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG---QWLYDPN--TDQT--EVH-SSVYASLRL--TSPREIMGY 81 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG---~w~~~~~--~~~~--~~~-~~~~~~~~~--~~~~~~~~~ 81 (454)
.+||+|||||++|+++|..|++.|++|+|+|+.+.... .|..... .+.. .+. ...++.+.. ..+...+.+
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 84 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRV 84 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEE
Confidence 47999999999999999999999999999999876532 2211000 0000 000 000010000 000000000
Q ss_pred C-----CCCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHhC-CCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEee
Q 044575 82 T-----DFPFVLKKGRDVR---RFPGHKELWLYLKDFCQRFG-LREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKE 152 (454)
Q Consensus 82 ~-----~~~~~~~~~~~~~---~~~~~~~~~~yl~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~ 152 (454)
. .+.+.... ...+ ....+..+.+.|.+.+++.+ +. +. +++|+++...++ .+.|++.+
T Consensus 85 ~~~~~~~~~~~~~~-~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~--~~-~~~v~~i~~~~~----------~~~v~~~~ 150 (388)
T PRK07608 85 FGDAHARLHFSAYQ-AGVPQLAWIVESSLIERALWAALRFQPNLT--WF-PARAQGLEVDPD----------AATLTLAD 150 (388)
T ss_pred EECCCceeEeeccc-cCCCCCEEEEEhHHHHHHHHHHHHhCCCcE--EE-cceeEEEEecCC----------eEEEEECC
Confidence 0 00000000 0011 11346678888877777765 54 55 888998875543 67777765
Q ss_pred cCCCeEEEEEeCEEEEccCCCC
Q 044575 153 KKADKVVEEVFDAVVVATGHYS 174 (454)
Q Consensus 153 ~~~~~~~~~~~d~vViAtG~~~ 174 (454)
+. ++.+|+||.|+|.++
T Consensus 151 g~-----~~~a~~vI~adG~~S 167 (388)
T PRK07608 151 GQ-----VLRADLVVGADGAHS 167 (388)
T ss_pred CC-----EEEeeEEEEeCCCCc
Confidence 53 689999999999654
No 141
>PLN02661 Putative thiazole synthesis
Probab=98.92 E-value=8.8e-09 Score=97.86 Aligned_cols=142 Identities=19% Similarity=0.255 Sum_probs=78.7
Q ss_pred CCcEEEECcChHHHHHHHHHHHc-CCcEEEEeeCCCCCc-ccccCCCCCCCCccccccccceecCCccccccCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKE-GHRVVVLEQNHDVGG-QWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLK 89 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~-g~~v~vie~~~~~GG-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (454)
..||+|||||++|++||..|++. |++|+|||++..+|| .|..........+..+ ....+.--+.++..
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~---------a~e~LeElGV~fd~- 161 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKP---------AHLFLDELGVPYDE- 161 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccH---------HHHHHHHcCCCccc-
Confidence 57999999999999999999976 899999999988876 5532111000000000 00011111233322
Q ss_pred CCCCCCCCC---CHHHHHHHHHHHHH-HhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCC---eEEEEE
Q 044575 90 KGRDVRRFP---GHKELWLYLKDFCQ-RFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKAD---KVVEEV 162 (454)
Q Consensus 90 ~~~~~~~~~---~~~~~~~yl~~~~~-~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~ 162 (454)
. ..|. +..++...|.+.+. +.++. +..++.|.++...++. +.+--. .|.....++... ....+.
T Consensus 162 ---~-dgy~vv~ha~e~~stLi~ka~~~~gVk--I~~~t~V~DLI~~~gr--VaGVVv-nw~~v~~~~~~~s~~dp~~I~ 232 (357)
T PLN02661 162 ---Q-ENYVVIKHAALFTSTIMSKLLARPNVK--LFNAVAAEDLIVKGDR--VGGVVT-NWALVAQNHDTQSCMDPNVME 232 (357)
T ss_pred ---C-CCeeEecchHHHHHHHHHHHHhcCCCE--EEeCeEeeeEEecCCE--EEEEEe-ecchhhhccCCCCccceeEEE
Confidence 1 1121 22344445554443 34565 7888888888765321 110000 244333332211 234689
Q ss_pred eCEEEEccCC
Q 044575 163 FDAVVVATGH 172 (454)
Q Consensus 163 ~d~vViAtG~ 172 (454)
+++||+|||+
T Consensus 233 AkaVVlATGh 242 (357)
T PLN02661 233 AKVVVSSCGH 242 (357)
T ss_pred CCEEEEcCCC
Confidence 9999999995
No 142
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.92 E-value=1e-08 Score=102.21 Aligned_cols=33 Identities=36% Similarity=0.596 Sum_probs=31.4
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQN 44 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~ 44 (454)
.+||+||||||+|+++|..|++.|++|+|+|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 479999999999999999999999999999986
No 143
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.91 E-value=1.7e-08 Score=104.54 Aligned_cols=147 Identities=19% Similarity=0.280 Sum_probs=84.2
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcc---cccCCCC---------CCCCcccc-cccccee-cCCc
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ---WLYDPNT---------DQTEVHSS-VYASLRL-TSPR 76 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~---w~~~~~~---------~~~~~~~~-~~~~~~~-~~~~ 76 (454)
..+||+||||||+|+++|..|++.|++|+|||+++.+... +...+.. ........ .+..... ....
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 101 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDE 101 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCC
Confidence 4579999999999999999999999999999998765321 1111000 00000000 0000000 0001
Q ss_pred cccccCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeec
Q 044575 77 EIMGYTDFPFVLKKGRDVRRF--PGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEK 153 (454)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~ 153 (454)
....+. .....+...+.+ .+...+.++|.+.+.++ ++. ++++++|++++..++ .+++++.+.
T Consensus 102 ~~~~~~---~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~--v~~~~~v~~i~~~~~----------~v~v~~~~~ 166 (547)
T PRK08132 102 EVYRFD---LLPEPGHRRPAFINLQQYYVEGYLVERAQALPNID--LRWKNKVTGLEQHDD----------GVTLTVETP 166 (547)
T ss_pred eEEEec---CCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcE--EEeCCEEEEEEEcCC----------EEEEEEECC
Confidence 111111 100000011111 35567778888877765 455 899999999987643 566665532
Q ss_pred CCCeEEEEEeCEEEEccCCCC
Q 044575 154 KADKVVEEVFDAVVVATGHYS 174 (454)
Q Consensus 154 ~~~~~~~~~~d~vViAtG~~~ 174 (454)
+ + ..++.+|+||.|.|.++
T Consensus 167 ~-g-~~~i~ad~vVgADG~~S 185 (547)
T PRK08132 167 D-G-PYTLEADWVIACDGARS 185 (547)
T ss_pred C-C-cEEEEeCEEEECCCCCc
Confidence 2 1 23689999999999655
No 144
>PRK07236 hypothetical protein; Provisional
Probab=98.91 E-value=9.5e-09 Score=101.83 Aligned_cols=147 Identities=21% Similarity=0.203 Sum_probs=77.7
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC----CcccccCCCCCCCCccccccccceecCCccccccCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV----GGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFV 87 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~----GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (454)
.++|+|||||++|+++|..|++.|++|+|+|+.+.. |+.....+..-..+-............+...+.+.+..-.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~ 85 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDGR 85 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCCC
Confidence 479999999999999999999999999999998642 1111000000000000000000000001000111010000
Q ss_pred CCCCCCC-CCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEE
Q 044575 88 LKKGRDV-RRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAV 166 (454)
Q Consensus 88 ~~~~~~~-~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~v 166 (454)
....... .....+..+.+.|.+ .+. ...++++++|++++..++ .++|+..++. ++.+|.|
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~L~~---~~~-~~~i~~~~~v~~i~~~~~----------~v~v~~~~g~-----~~~ad~v 146 (386)
T PRK07236 86 VVQRRPMPQTQTSWNVLYRALRA---AFP-AERYHLGETLVGFEQDGD----------RVTARFADGR-----RETADLL 146 (386)
T ss_pred EeeccCCCccccCHHHHHHHHHH---hCC-CcEEEcCCEEEEEEecCC----------eEEEEECCCC-----EEEeCEE
Confidence 0000000 112234444444432 222 123899999999986543 6778777654 7899999
Q ss_pred EEccCCCCCCC
Q 044575 167 VVATGHYSYPR 177 (454)
Q Consensus 167 ViAtG~~~~p~ 177 (454)
|.|.|.+|.-+
T Consensus 147 IgADG~~S~vR 157 (386)
T PRK07236 147 VGADGGRSTVR 157 (386)
T ss_pred EECCCCCchHH
Confidence 99999766443
No 145
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.91 E-value=1.5e-08 Score=100.21 Aligned_cols=143 Identities=15% Similarity=0.134 Sum_probs=78.1
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC--C--CcccccC--CCCCCC---Ccccccccccee-----------
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD--V--GGQWLYD--PNTDQT---EVHSSVYASLRL----------- 72 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~--~--GG~w~~~--~~~~~~---~~~~~~~~~~~~----------- 72 (454)
+||+||||||+|+++|..|++.|++|+|||+.+. . .|.+... ...+.. +-.-.+++.+..
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~ 83 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLET 83 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEE
Confidence 7999999999999999999999999999998751 1 1110000 000000 000001111110
Q ss_pred -cCCccccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEE
Q 044575 73 -TSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKS 150 (454)
Q Consensus 73 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~ 150 (454)
........+....... ........+..+...|.+-+... ++. ++++++|++++..++ ..+|++
T Consensus 84 ~~~~~~~~~~~~~~~~~---~~~g~~i~~~~l~~~L~~~~~~~~~i~--i~~~~~v~~~~~~~~----------~~~v~~ 148 (384)
T PRK08849 84 WEHPECRTRFHSDELNL---DQLGYIVENRLIQLGLWQQFAQYPNLT--LMCPEKLADLEFSAE----------GNRVTL 148 (384)
T ss_pred EeCCCceEEecccccCC---CccEEEEEcHHHHHHHHHHHHhCCCeE--EECCCceeEEEEcCC----------eEEEEE
Confidence 0000000111000000 00011123445555555544443 444 888999999987643 567777
Q ss_pred eecCCCeEEEEEeCEEEEccCCCCC
Q 044575 151 KEKKADKVVEEVFDAVVVATGHYSY 175 (454)
Q Consensus 151 ~~~~~~~~~~~~~d~vViAtG~~~~ 175 (454)
.++. ++++|.||.|+|.+|.
T Consensus 149 ~~g~-----~~~~~lvIgADG~~S~ 168 (384)
T PRK08849 149 ESGA-----EIEAKWVIGADGANSQ 168 (384)
T ss_pred CCCC-----EEEeeEEEEecCCCch
Confidence 7654 7899999999996554
No 146
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.89 E-value=1.8e-08 Score=99.76 Aligned_cols=144 Identities=19% Similarity=0.206 Sum_probs=86.6
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC-C---CCcccccCC-------CCC--CCCc--cccccccceecCCc
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH-D---VGGQWLYDP-------NTD--QTEV--HSSVYASLRLTSPR 76 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~-~---~GG~w~~~~-------~~~--~~~~--~~~~~~~~~~~~~~ 76 (454)
.+||+||||||+|+++|..|++.|++|+|||+.+ . .|-.-...+ ... .... ....+.........
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 3789999999999999999999999999999972 2 110000000 000 0000 00011111111100
Q ss_pred -cccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEe-ec
Q 044575 77 -EIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFG-LREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSK-EK 153 (454)
Q Consensus 77 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~-~~ 153 (454)
....+....... .......++.++..-|.+.+...+ +. +.++++|+.++..++ ..++++. ++
T Consensus 82 ~~~~~~~~~~~~~---~~~~~~~~~~~l~~~L~~~~~~~~~v~--~~~~~~v~~~~~~~~----------~v~v~l~~dG 146 (387)
T COG0654 82 RRLLIFDAAELGR---GALGYVVPRSDLLNALLEAARALPNVT--LRFGAEVEAVEQDGD----------GVTVTLSFDG 146 (387)
T ss_pred ceeEEecccccCC---CcceEEeEhHHHHHHHHHHHhhCCCcE--EEcCceEEEEEEcCC----------ceEEEEcCCC
Confidence 011111111110 012223567888899988888765 56 899999999998764 5567777 54
Q ss_pred CCCeEEEEEeCEEEEccCCCCC
Q 044575 154 KADKVVEEVFDAVVVATGHYSY 175 (454)
Q Consensus 154 ~~~~~~~~~~d~vViAtG~~~~ 175 (454)
. ++.+|.||-|-|.+|.
T Consensus 147 ~-----~~~a~llVgADG~~S~ 163 (387)
T COG0654 147 E-----TLDADLLVGADGANSA 163 (387)
T ss_pred c-----EEecCEEEECCCCchH
Confidence 3 8999999999996653
No 147
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.88 E-value=4.7e-10 Score=112.25 Aligned_cols=141 Identities=19% Similarity=0.149 Sum_probs=37.3
Q ss_pred cEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCc------cccccccceecCCccccccCCCCCC
Q 044575 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEV------HSSVYASLRLTSPREIMGYTDFPFV 87 (454)
Q Consensus 14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (454)
||||||||+||++||..+++.|.+|+|||+.+.+||............. ....+..+.... ......+.+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~----~~~~~~~~~ 76 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRL----RARGGYPQE 76 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHH----hhhcccccc
Confidence 7999999999999999999999999999999999998765443211100 000111111100 000000000
Q ss_pred CCCCCCC-CCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEE
Q 044575 88 LKKGRDV-RRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAV 166 (454)
Q Consensus 88 ~~~~~~~-~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~v 166 (454)
... ... ......+.+...+.+.+.+.++. +.+++.|.++...+.. -+.|++.+.. + ..++.++.+
T Consensus 77 ~~~-~~~~~~~~~~~~~~~~l~~~l~e~gv~--v~~~t~v~~v~~~~~~---------i~~V~~~~~~-g-~~~i~A~~~ 142 (428)
T PF12831_consen 77 DRY-GWVSNVPFDPEVFKAVLDEMLAEAGVE--VLLGTRVVDVIRDGGR---------ITGVIVETKS-G-RKEIRAKVF 142 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccc-ccccccccccccccccccccccccccc--cccccccccccccccc---------cccccccccc-c-ccccccccc
Confidence 000 000 01233355566777777777888 9999999999876533 4556665432 2 458899999
Q ss_pred EEccCC
Q 044575 167 VVATGH 172 (454)
Q Consensus 167 ViAtG~ 172 (454)
|-|||-
T Consensus 143 IDaTG~ 148 (428)
T PF12831_consen 143 IDATGD 148 (428)
T ss_dssp ------
T ss_pred cccccc
Confidence 999993
No 148
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.88 E-value=1.6e-08 Score=100.09 Aligned_cols=144 Identities=15% Similarity=0.102 Sum_probs=80.9
Q ss_pred cEEEECcChHHHHHHHHHHHcC-CcEEEEeeCCCCCccccc----CCCCCCC---Cccccccccceec-CCccccccCC-
Q 044575 14 NVCVIGAGPSGLVAARELRKEG-HRVVVLEQNHDVGGQWLY----DPNTDQT---EVHSSVYASLRLT-SPREIMGYTD- 83 (454)
Q Consensus 14 ~VvIIGaG~aGl~aA~~l~~~g-~~v~vie~~~~~GG~w~~----~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~- 83 (454)
||+||||||+|+++|..|++.| ++|+|+|+.+...-.-.. ....+.. +-.-.+++.+... .+.....+.+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 6999999999999999999999 999999998653210000 0000000 0000000000000 0000000000
Q ss_pred -----CCCCCC-CCCCCCCC-CCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCC
Q 044575 84 -----FPFVLK-KGRDVRRF-PGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKA 155 (454)
Q Consensus 84 -----~~~~~~-~~~~~~~~-~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~ 155 (454)
..+... .+.....| ..+.++.+.|.+.+... ++. ++++++|+++...++ .++|++.++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~--~~~~~~v~~i~~~~~----------~~~v~~~~g~- 147 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQ--LYCPARYKEIIRNQD----------YVRVTLDNGQ- 147 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcE--EEcCCeEEEEEEcCC----------eEEEEECCCC-
Confidence 000000 00000111 45677888888877763 666 888999999986543 6777776543
Q ss_pred CeEEEEEeCEEEEccCCCC
Q 044575 156 DKVVEEVFDAVVVATGHYS 174 (454)
Q Consensus 156 ~~~~~~~~d~vViAtG~~~ 174 (454)
++.+|.||.|.|.++
T Consensus 148 ----~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 148 ----QLRAKLLIAADGANS 162 (382)
T ss_pred ----EEEeeEEEEecCCCh
Confidence 689999999999655
No 149
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.87 E-value=2.1e-08 Score=101.91 Aligned_cols=153 Identities=25% Similarity=0.258 Sum_probs=83.9
Q ss_pred cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC--CCcccccCCC------CCCCCc---cc--cccccce-----
Q 044575 10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD--VGGQWLYDPN------TDQTEV---HS--SVYASLR----- 71 (454)
Q Consensus 10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~--~GG~w~~~~~------~~~~~~---~~--~~~~~~~----- 71 (454)
+...||||||+|++|++||.++++.|.+|+||||.+. .||.-..... ...... .+ ..+..+.
T Consensus 2 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (466)
T PRK08274 2 ASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGG 81 (466)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCC
Confidence 3458999999999999999999999999999999874 5553221110 000000 00 0000000
Q ss_pred -----------ecCCcccccc--CCCCCCCCC-CC----CCCC-C-CCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEE
Q 044575 72 -----------LTSPREIMGY--TDFPFVLKK-GR----DVRR-F-PGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGM 131 (454)
Q Consensus 72 -----------~~~~~~~~~~--~~~~~~~~~-~~----~~~~-~-~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~ 131 (454)
.+.+...-.+ .+.++.... +. .... + .....+...+.+.+++.++. ++++++|+++..
T Consensus 82 ~~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~--i~~~t~v~~l~~ 159 (466)
T PRK08274 82 RTDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVE--IRYDAPVTALEL 159 (466)
T ss_pred CCCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCE--EEcCCEEEEEEe
Confidence 0000000000 111111100 00 0000 0 12456777888888888887 999999999986
Q ss_pred cCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575 132 LDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS 174 (454)
Q Consensus 132 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~ 174 (454)
.+.. -.-|...+. ++....+.++.||+|||.+.
T Consensus 160 ~~g~---------v~gv~~~~~-~g~~~~i~a~~VIlAtGg~~ 192 (466)
T PRK08274 160 DDGR---------FVGARAGSA-AGGAERIRAKAVVLAAGGFE 192 (466)
T ss_pred cCCe---------EEEEEEEcc-CCceEEEECCEEEECCCCCC
Confidence 4321 223433221 23344678999999999654
No 150
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.86 E-value=2.1e-08 Score=99.76 Aligned_cols=146 Identities=17% Similarity=0.160 Sum_probs=77.4
Q ss_pred CCcEEEECcChHHHHHHHHHHHc---CCcEEEEeeCCCCCccc-ccCCCCCC------CCc-cccccccceecC-Ccccc
Q 044575 12 SKNVCVIGAGPSGLVAARELRKE---GHRVVVLEQNHDVGGQW-LYDPNTDQ------TEV-HSSVYASLRLTS-PREIM 79 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~---g~~v~vie~~~~~GG~w-~~~~~~~~------~~~-~~~~~~~~~~~~-~~~~~ 79 (454)
.+||+||||||+|+++|..|++. |++|+|||+....+-.. .+..+... ..+ .-.+++.+.... +...+
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~ 82 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHI 82 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEE
Confidence 47999999999999999999998 99999999953111000 00000000 000 000111110000 00000
Q ss_pred ccCC---C---CCCC-CCCCCCC-CCCCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEE
Q 044575 80 GYTD---F---PFVL-KKGRDVR-RFPGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKS 150 (454)
Q Consensus 80 ~~~~---~---~~~~-~~~~~~~-~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~ 150 (454)
.+.+ . .+.. ..+.... ....+.++.+.+.+.+... ++. ++++++|+++...++ .|.|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~--~~~~~~v~~i~~~~~----------~~~v~~ 150 (395)
T PRK05732 83 HVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVT--LHCPARVANVERTQG----------SVRVTL 150 (395)
T ss_pred EEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcE--EEcCCEEEEEEEcCC----------eEEEEE
Confidence 0000 0 0000 0000000 1133456666666655543 454 788999999876543 677877
Q ss_pred eecCCCeEEEEEeCEEEEccCCCC
Q 044575 151 KEKKADKVVEEVFDAVVVATGHYS 174 (454)
Q Consensus 151 ~~~~~~~~~~~~~d~vViAtG~~~ 174 (454)
.++. .+.+|+||.|.|.++
T Consensus 151 ~~g~-----~~~a~~vI~AdG~~S 169 (395)
T PRK05732 151 DDGE-----TLTGRLLVAADGSHS 169 (395)
T ss_pred CCCC-----EEEeCEEEEecCCCh
Confidence 6553 689999999999644
No 151
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.86 E-value=2.5e-08 Score=101.55 Aligned_cols=39 Identities=28% Similarity=0.488 Sum_probs=35.1
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC-CCCc
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH-DVGG 49 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~-~~GG 49 (454)
..+||+|||||+||+.||..+++.|.+|+++|++. .+|+
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~ 42 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQ 42 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccc
Confidence 35899999999999999999999999999999974 5664
No 152
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.84 E-value=3.3e-08 Score=99.74 Aligned_cols=150 Identities=25% Similarity=0.264 Sum_probs=86.6
Q ss_pred cEEEECcChHHHHHHHHHHHcC-CcEEEEeeCCCCCcccccCCC---C-CC----------C-------Ccc-------c
Q 044575 14 NVCVIGAGPSGLVAARELRKEG-HRVVVLEQNHDVGGQWLYDPN---T-DQ----------T-------EVH-------S 64 (454)
Q Consensus 14 ~VvIIGaG~aGl~aA~~l~~~g-~~v~vie~~~~~GG~w~~~~~---~-~~----------~-------~~~-------~ 64 (454)
||||||||.||++||.++++.| .+|+|+||.+..||.-..... . .+ . .+. .
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 7999999999999999999999 999999999887765322110 0 00 0 000 0
Q ss_pred cccccceecCCcc--ccccCCCCCCC-----CCCC--CC-----CCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEE
Q 044575 65 SVYASLRLTSPRE--IMGYTDFPFVL-----KKGR--DV-----RRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVG 130 (454)
Q Consensus 65 ~~~~~~~~~~~~~--~~~~~~~~~~~-----~~~~--~~-----~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~ 130 (454)
.....+..+.+.. .+. .+.++.. ..+. .. .......++.+.+.+.+++.++. ++++++|+++.
T Consensus 81 ~l~~~~~~~~~~~i~wl~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~--i~~~~~v~~l~ 157 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQ-DGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGID--TRLNSKVEDLI 157 (439)
T ss_pred HHHHHHHhccHHHHHHHH-hCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCE--EEeCCEeeEeE
Confidence 0000000000000 000 0111110 0000 00 11134567888999999988887 99999999998
Q ss_pred EcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCCC
Q 044575 131 MLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSY 175 (454)
Q Consensus 131 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~~ 175 (454)
..+++. .+.|.+.+.+ +....+.+|.||+|||.++.
T Consensus 158 ~~~~g~--------v~Gv~~~~~~-g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 158 QDDQGT--------VVGVVVKGKG-KGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred ECCCCc--------EEEEEEEeCC-CeEEEEecceEEEecCCCCC
Confidence 754321 2334444322 33445789999999996554
No 153
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.84 E-value=6.4e-08 Score=99.04 Aligned_cols=41 Identities=27% Similarity=0.374 Sum_probs=36.2
Q ss_pred ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCc
Q 044575 9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49 (454)
Q Consensus 9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG 49 (454)
|++.+||+|||||..|+++|+.|++.|++|+|||+++..+|
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~G 43 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASA 43 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 45669999999999999999999999999999999765433
No 154
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.83 E-value=3.9e-08 Score=98.76 Aligned_cols=147 Identities=22% Similarity=0.270 Sum_probs=82.1
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC----CCcccccC----CCCCCCCccccccccceecCCccccccC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD----VGGQWLYD----PNTDQTEVHSSVYASLRLTSPREIMGYT 82 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~----~GG~w~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (454)
..+||+||||||||++||..|++.|++|+|+|+... .||..... -..+..... .....++...|.... .
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~-~~i~~~~~~~p~~~~--v 114 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIID-RKVTKMKMISPSNVA--V 114 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHH-HHhhhheEecCCceE--E
Confidence 368999999999999999999999999999999753 12211000 000000000 000111111111100 0
Q ss_pred CCCCCCCCCCCCCCC---CCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecC----C
Q 044575 83 DFPFVLKKGRDVRRF---PGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKK----A 155 (454)
Q Consensus 83 ~~~~~~~~~~~~~~~---~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~----~ 155 (454)
+++... ....| ..++.+.++|.+.+.+.|.. ++.+ ++.+++..... ++ .+.|++.+.. +
T Consensus 115 ~~~~~~----~~~~~~~~v~R~~~d~~L~~~A~~~Ga~--~~~~-~v~~i~~~~~~------~~-~~~v~~~~~~~~~~~ 180 (450)
T PLN00093 115 DIGKTL----KPHEYIGMVRREVLDSFLRERAQSNGAT--LING-LFTRIDVPKDP------NG-PYVIHYTSYDSGSGA 180 (450)
T ss_pred EecccC----CCCCeEEEecHHHHHHHHHHHHHHCCCE--EEec-eEEEEEeccCC------CC-cEEEEEEeccccccC
Confidence 000000 01122 57888999999999888876 5544 57777643211 01 5667665420 1
Q ss_pred CeEEEEEeCEEEEccCCCC
Q 044575 156 DKVVEEVFDAVVVATGHYS 174 (454)
Q Consensus 156 ~~~~~~~~d~vViAtG~~~ 174 (454)
++..++++|.||.|+|.+|
T Consensus 181 g~~~~v~a~~VIgADG~~S 199 (450)
T PLN00093 181 GTPKTLEVDAVIGADGANS 199 (450)
T ss_pred CCccEEEeCEEEEcCCcch
Confidence 2234789999999999544
No 155
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.83 E-value=3e-08 Score=99.19 Aligned_cols=140 Identities=17% Similarity=0.154 Sum_probs=78.2
Q ss_pred cEEEECcChHHHHHHHHHHHcC-CcEEEEeeCCCCCcc---cccCCCCCCCCcccccccccee---cCCc--c--ccccC
Q 044575 14 NVCVIGAGPSGLVAARELRKEG-HRVVVLEQNHDVGGQ---WLYDPNTDQTEVHSSVYASLRL---TSPR--E--IMGYT 82 (454)
Q Consensus 14 ~VvIIGaG~aGl~aA~~l~~~g-~~v~vie~~~~~GG~---w~~~~~~~~~~~~~~~~~~~~~---~~~~--~--~~~~~ 82 (454)
+|+|||||++|+++|..|++.| .+|+|||+.+.++.. ....++.-..+-...+.+.+.. ..+. . .+.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6999999999999999999998 599999998875421 1111110000000000000000 0000 0 00000
Q ss_pred --------CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecC
Q 044575 83 --------DFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKK 154 (454)
Q Consensus 83 --------~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~ 154 (454)
...... + ....-..+.++.+.|.+.+. . ..++++++|++|+..++ .|+|+..++.
T Consensus 82 ~~~~~~~~~~~~~~--~-~~~~~i~R~~l~~~L~~~~~--~--~~v~~~~~v~~i~~~~~----------~~~v~~~~g~ 144 (414)
T TIGR03219 82 NGSDASYLGATIAP--G-VGQSSVHRADFLDALLKHLP--E--GIASFGKRATQIEEQAE----------EVQVLFTDGT 144 (414)
T ss_pred ecCccceeeeeccc--c-CCcccCCHHHHHHHHHHhCC--C--ceEEcCCEEEEEEecCC----------cEEEEEcCCC
Confidence 000000 0 00112355666666665442 1 23789999999987543 7888887654
Q ss_pred CCeEEEEEeCEEEEccCCCCC
Q 044575 155 ADKVVEEVFDAVVVATGHYSY 175 (454)
Q Consensus 155 ~~~~~~~~~d~vViAtG~~~~ 175 (454)
++.+|.||.|.|.+|.
T Consensus 145 -----~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 145 -----EYRCDLLIGADGIKSA 160 (414)
T ss_pred -----EEEeeEEEECCCccHH
Confidence 6899999999997664
No 156
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.83 E-value=4.2e-08 Score=96.18 Aligned_cols=144 Identities=15% Similarity=0.209 Sum_probs=82.9
Q ss_pred cEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCCc--ccccCCCCCCCC-------ccccccccceecCCccccccC
Q 044575 14 NVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGG--QWLYDPNTDQTE-------VHSSVYASLRLTSPREIMGYT 82 (454)
Q Consensus 14 ~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~GG--~w~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 82 (454)
||+|||||+||+++|..|++. |++|+++|+.+.+|| +|.+........ +-...|.......+.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~------ 74 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPK------ 74 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcc------
Confidence 799999999999999999987 999999999988887 465543211110 011122222211111
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEE
Q 044575 83 DFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEV 162 (454)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 162 (454)
..... + .........++.+++.+.+ +.. +.++++|.+++.. . |++.++. ++.
T Consensus 75 -~~~~l--~-~~Y~~I~r~~f~~~l~~~l---~~~--i~~~~~V~~v~~~------------~--v~l~dg~-----~~~ 126 (370)
T TIGR01789 75 -YRRKL--K-TAYRSMTSTRFHEGLLQAF---PEG--VILGRKAVGLDAD------------G--VDLAPGT-----RIN 126 (370)
T ss_pred -hhhhc--C-CCceEEEHHHHHHHHHHhh---ccc--EEecCEEEEEeCC------------E--EEECCCC-----EEE
Confidence 10000 0 0011234566666664332 333 7778899988321 4 4445554 789
Q ss_pred eCEEEEccCCCCCCCCCCCCCcCCccceeEE
Q 044575 163 FDAVVVATGHYSYPRLPSIKGMDKWKRKQMH 193 (454)
Q Consensus 163 ~d~vViAtG~~~~p~~p~i~G~~~~~~~~~~ 193 (454)
+|.||-|.|.. +..+...|...|.|....
T Consensus 127 A~~VI~A~G~~--s~~~~~~~~Q~f~G~~~r 155 (370)
T TIGR01789 127 ARSVIDCRGFK--PSAHLKGGFQVFLGREMR 155 (370)
T ss_pred eeEEEECCCCC--CCccccceeeEEEEEEEE
Confidence 99999999954 322222455555544433
No 157
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.82 E-value=3.4e-08 Score=97.39 Aligned_cols=141 Identities=13% Similarity=0.147 Sum_probs=81.2
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC-------CcccccCCCCCCC-----C---cc--ccccccceecCC
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV-------GGQWLYDPNTDQT-----E---VH--SSVYASLRLTSP 75 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~-------GG~w~~~~~~~~~-----~---~~--~~~~~~~~~~~~ 75 (454)
.||+|||||++|+++|..|++.|++|+|+|+.+.. +......+..-.. . +. ...+..+....+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 81 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDN 81 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEEC
Confidence 58999999999999999999999999999986321 1111111000000 0 00 000111111000
Q ss_pred c--cccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhC-CCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEee
Q 044575 76 R--EIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFG-LREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKE 152 (454)
Q Consensus 76 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~ 152 (454)
. ....+.. .. .........+.++.+.|.+-+...+ +. ++++++|+++...++ .+.|.+.+
T Consensus 82 ~g~~~~~~~~---~~--~~~~g~~v~r~~L~~~L~~~~~~~~~v~--~~~~~~v~~i~~~~~----------~v~v~~~~ 144 (374)
T PRK06617 82 KASEILDLRN---DA--DAVLGYVVKNSDFKKILLSKITNNPLIT--LIDNNQYQEVISHND----------YSIIKFDD 144 (374)
T ss_pred CCceEEEecC---CC--CCCcEEEEEHHHHHHHHHHHHhcCCCcE--EECCCeEEEEEEcCC----------eEEEEEcC
Confidence 0 0111111 00 0001122467788888888777664 44 778999999876543 56676643
Q ss_pred cCCCeEEEEEeCEEEEccCCCCCC
Q 044575 153 KKADKVVEEVFDAVVVATGHYSYP 176 (454)
Q Consensus 153 ~~~~~~~~~~~d~vViAtG~~~~p 176 (454)
. ++++|.||.|.|.+|.-
T Consensus 145 -~-----~~~adlvIgADG~~S~v 162 (374)
T PRK06617 145 -K-----QIKCNLLIICDGANSKV 162 (374)
T ss_pred -C-----EEeeCEEEEeCCCCchh
Confidence 1 78999999999976644
No 158
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.80 E-value=3.8e-08 Score=99.10 Aligned_cols=154 Identities=16% Similarity=0.165 Sum_probs=81.5
Q ss_pred CcEEEECcChHHHHHHHHHHH----cCCcEEEEeeCCCCCcc---cc-----cCCC----CCCC---Cccccccccceec
Q 044575 13 KNVCVIGAGPSGLVAARELRK----EGHRVVVLEQNHDVGGQ---WL-----YDPN----TDQT---EVHSSVYASLRLT 73 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~----~g~~v~vie~~~~~GG~---w~-----~~~~----~~~~---~~~~~~~~~~~~~ 73 (454)
+||+||||||+|+++|..|++ .|++|+|||+++...-. +. +... .+.. +-...+++.+...
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 589999999999999999998 79999999995422100 00 0000 0000 0000011111100
Q ss_pred --CCccccccC------CCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHhC---CCccEEeCeEEEEEEEcCCCccccCC
Q 044575 74 --SPREIMGYT------DFPFVLKKGRD-VRRFPGHKELWLYLKDFCQRFG---LREMIRFNTRVEYVGMLDCGELIIGN 141 (454)
Q Consensus 74 --~~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~yl~~~~~~~~---~~~~i~~~~~V~~v~~~~~~~~~~~~ 141 (454)
.+...+.+. ...++...+.. .....++..+.+.|.+.+.+.+ +. ++++++|++++...... +.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~--i~~~~~v~~i~~~~~~~---~~ 155 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVK--ILNPARLISVTIPSKYP---ND 155 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeE--EecCCeeEEEEeccccc---cC
Confidence 000000000 00111100000 1112456778888887777664 44 88999999997531000 00
Q ss_pred cCCcEEEEEeecCCCeEEEEEeCEEEEccCCCCCC
Q 044575 142 DLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYP 176 (454)
Q Consensus 142 ~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~~p 176 (454)
+....+|++.++. ++++|.||.|.|.+|.-
T Consensus 156 ~~~~v~v~~~~g~-----~i~a~llVgADG~~S~v 185 (437)
T TIGR01989 156 NSNWVHITLSDGQ-----VLYTKLLIGADGSNSNV 185 (437)
T ss_pred CCCceEEEEcCCC-----EEEeeEEEEecCCCChh
Confidence 0005667776554 78999999999966543
No 159
>PRK06996 hypothetical protein; Provisional
Probab=98.80 E-value=4.9e-08 Score=97.11 Aligned_cols=143 Identities=13% Similarity=0.079 Sum_probs=82.5
Q ss_pred cCCCcEEEECcChHHHHHHHHHHHcC----CcEEEEeeCCCCCcccccCCCC---CCC--------Cccc--ccccccee
Q 044575 10 AQSKNVCVIGAGPSGLVAARELRKEG----HRVVVLEQNHDVGGQWLYDPNT---DQT--------EVHS--SVYASLRL 72 (454)
Q Consensus 10 ~~~~~VvIIGaG~aGl~aA~~l~~~g----~~v~vie~~~~~GG~w~~~~~~---~~~--------~~~~--~~~~~~~~ 72 (454)
...+||+||||||+|+++|..|++.| .+|+|+|+.+... ........ +.. .+.. ..+.....
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~-~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~ 87 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAA-SANDPRAIALSHGSRVLLETLGAWPADATPIEHIHV 87 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCc-CCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEE
Confidence 44689999999999999999999987 4799999975321 00000000 000 0000 00001100
Q ss_pred cC--C--ccccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEE
Q 044575 73 TS--P--REIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVV 148 (454)
Q Consensus 73 ~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v 148 (454)
.. . .......++..+ ......++.++.+.|.+.+...++. +.+++++++++...+ .+++
T Consensus 88 ~~~~~~g~~~~~~~~~~~~-----~~g~~v~r~~l~~~L~~~~~~~g~~--~~~~~~v~~~~~~~~----------~v~v 150 (398)
T PRK06996 88 SQRGHFGRTLIDRDDHDVP-----ALGYVVRYGSLVAALARAVRGTPVR--WLTSTTAHAPAQDAD----------GVTL 150 (398)
T ss_pred ecCCCCceEEecccccCCC-----cCEEEEEhHHHHHHHHHHHHhCCCE--EEcCCeeeeeeecCC----------eEEE
Confidence 00 0 000111111111 0011245678888888888877765 888999999876543 6777
Q ss_pred EEeecCCCeEEEEEeCEEEEccCC
Q 044575 149 KSKEKKADKVVEEVFDAVVVATGH 172 (454)
Q Consensus 149 ~~~~~~~~~~~~~~~d~vViAtG~ 172 (454)
+..+++ + ..++++|+||.|.|.
T Consensus 151 ~~~~~~-g-~~~i~a~lvIgADG~ 172 (398)
T PRK06996 151 ALGTPQ-G-ARTLRARIAVQAEGG 172 (398)
T ss_pred EECCCC-c-ceEEeeeEEEECCCC
Confidence 766542 1 247899999999993
No 160
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.80 E-value=9.9e-08 Score=97.65 Aligned_cols=40 Identities=33% Similarity=0.576 Sum_probs=37.1
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcc
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~ 50 (454)
..+||||||+|.||++||..+++.|.+|+||||.+.+||.
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~ 99 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGN 99 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCc
Confidence 4689999999999999999999999999999999888774
No 161
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.80 E-value=3.3e-08 Score=98.47 Aligned_cols=150 Identities=19% Similarity=0.207 Sum_probs=83.0
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC---CcccccCCCCCCCCccccccccceec-CCccccccCC-C---
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV---GGQWLYDPNTDQTEVHSSVYASLRLT-SPREIMGYTD-F--- 84 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~---GG~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~--- 84 (454)
.+|+|||||++|+++|..|++.|++|+|+|+.+.+ |......+..-..+-.-.+++.+... .+...+.+.+ .
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 68999999999999999999999999999998764 22211111100000000001110000 0000000000 0
Q ss_pred -----CCCC-CCCCCCCCC--CCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCC
Q 044575 85 -----PFVL-KKGRDVRRF--PGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKA 155 (454)
Q Consensus 85 -----~~~~-~~~~~~~~~--~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~ 155 (454)
.+.. ........| .++.++.+.|.+.+.+. ++. ++++++|++++..++ .+++++.++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~--v~~~~~v~~~~~~~~----------~v~v~~~~~~~ 150 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIE--IKLGAEMTSQRQTGN----------SITATIIRTNS 150 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcE--EEECCEEEEEecCCC----------ceEEEEEeCCC
Confidence 0000 000001112 35677888887766553 455 899999999976533 56676654321
Q ss_pred CeEEEEEeCEEEEccCCCCCC
Q 044575 156 DKVVEEVFDAVVVATGHYSYP 176 (454)
Q Consensus 156 ~~~~~~~~d~vViAtG~~~~p 176 (454)
..++.+|.||-|.|.+|.-
T Consensus 151 --~~~~~adlvIgADG~~S~v 169 (400)
T PRK06475 151 --VETVSAAYLIACDGVWSML 169 (400)
T ss_pred --CcEEecCEEEECCCccHhH
Confidence 1267899999999976644
No 162
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.80 E-value=7.5e-09 Score=74.70 Aligned_cols=37 Identities=51% Similarity=0.681 Sum_probs=34.5
Q ss_pred EECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccccc
Q 044575 17 VIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLY 53 (454)
Q Consensus 17 IIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~ 53 (454)
|||||++||++|..|++.|++|+|+|+++.+||.+..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~ 37 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARS 37 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCE
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeE
Confidence 8999999999999999999999999999999999874
No 163
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.79 E-value=2.3e-07 Score=94.40 Aligned_cols=145 Identities=19% Similarity=0.257 Sum_probs=93.4
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
.++|+|||||++|+.+|..|++.|.+|+++|+.+.+. |
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il------------------------------------~------ 217 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL------------------------------------P------ 217 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC------------------------------------C------
Confidence 4789999999999999999999999999999976430 0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEE-EEEeecCCCeEEEEEeCEEEEcc
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWV-VKSKEKKADKVVEEVFDAVVVAT 170 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~d~vViAt 170 (454)
. ...++.+.+.+..++.++. ++++++|.+++...++ +.. +...++ ...++.||.||+|+
T Consensus 218 ----~--~~~~~~~~l~~~l~~~gI~--i~~~~~v~~i~~~~~~---------~~~~~~~~~g---~~~~i~~D~vi~a~ 277 (472)
T PRK05976 218 ----T--EDAELSKEVARLLKKLGVR--VVTGAKVLGLTLKKDG---------GVLIVAEHNG---EEKTLEADKVLVSV 277 (472)
T ss_pred ----c--CCHHHHHHHHHHHHhcCCE--EEeCcEEEEEEEecCC---------CEEEEEEeCC---ceEEEEeCEEEEee
Confidence 0 0155667777777778887 8999999999752111 222 222222 23468999999999
Q ss_pred CCCCCCCCCCCCCcCC-----ccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHh
Q 044575 171 GHYSYPRLPSIKGMDK-----WKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELV 225 (454)
Q Consensus 171 G~~~~p~~p~i~G~~~-----~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~ 225 (454)
| ..|+...+ +++. -.+.+. ...+. +...++|-++|....+.+++....
T Consensus 278 G--~~p~~~~l-~l~~~~~~~~~g~i~-Vd~~l---~ts~~~IyAiGD~~~~~~~~~~A~ 330 (472)
T PRK05976 278 G--RRPNTEGI-GLENTDIDVEGGFIQ-IDDFC---QTKERHIYAIGDVIGEPQLAHVAM 330 (472)
T ss_pred C--CccCCCCC-CchhcCceecCCEEE-ECCCc---ccCCCCEEEeeecCCCcccHHHHH
Confidence 9 78876532 1111 111111 11111 112367899998765554444333
No 164
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.79 E-value=5e-08 Score=96.85 Aligned_cols=149 Identities=20% Similarity=0.168 Sum_probs=79.3
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC------CcccccCCCC------C--CCCcc-ccccccceecCCcc
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV------GGQWLYDPNT------D--QTEVH-SSVYASLRLTSPRE 77 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~------GG~w~~~~~~------~--~~~~~-~~~~~~~~~~~~~~ 77 (454)
+||+||||||+|+++|..|++.|++|+|+|+.+.. ++.....+.. . ..... ..............
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~ 82 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR 82 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence 68999999999999999999999999999998741 1111000000 0 00000 00000010000000
Q ss_pred ccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCe
Q 044575 78 IMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADK 157 (454)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 157 (454)
.. .++++...+.......++.++.+.+.+.+...++. ++++++|++++..+.. .-.|++... ++
T Consensus 83 ~~---~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~--v~~~~~v~~i~~~~~~---------~~~V~~~~~--G~ 146 (392)
T PRK08243 83 RH---RIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGP--IRFEASDVALHDFDSD---------RPYVTYEKD--GE 146 (392)
T ss_pred EE---EeccccccCCceEEEeCcHHHHHHHHHHHHhCCCe--EEEeeeEEEEEecCCC---------ceEEEEEcC--Ce
Confidence 00 11111100000001123445555555555556666 8999999998752222 334555321 33
Q ss_pred EEEEEeCEEEEccCCCCCCC
Q 044575 158 VVEEVFDAVVVATGHYSYPR 177 (454)
Q Consensus 158 ~~~~~~d~vViAtG~~~~p~ 177 (454)
..++++|+||-|.|.+|.-+
T Consensus 147 ~~~i~ad~vVgADG~~S~vR 166 (392)
T PRK08243 147 EHRLDCDFIAGCDGFHGVSR 166 (392)
T ss_pred EEEEEeCEEEECCCCCCchh
Confidence 45789999999999766443
No 165
>PRK07121 hypothetical protein; Validated
Probab=98.78 E-value=5.9e-08 Score=99.19 Aligned_cols=41 Identities=39% Similarity=0.579 Sum_probs=37.2
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccc
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQW 51 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w 51 (454)
...||||||+|.||++||.++++.|.+|+|+||.+..||.-
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s 59 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGAT 59 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcc
Confidence 36899999999999999999999999999999998877643
No 166
>PRK05868 hypothetical protein; Validated
Probab=98.77 E-value=4.4e-08 Score=96.44 Aligned_cols=35 Identities=34% Similarity=0.436 Sum_probs=32.9
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV 47 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~ 47 (454)
+||+|||||++|+++|..|++.|++|+|||+.+.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 58999999999999999999999999999998764
No 167
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.77 E-value=4.3e-08 Score=95.72 Aligned_cols=59 Identities=29% Similarity=0.316 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEE-EEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575 98 PGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWV-VKSKEKKADKVVEEVFDAVVVATGHYS 174 (454)
Q Consensus 98 ~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~d~vViAtG~~~ 174 (454)
.....+...+.+.+++.|+. ++.+++|.+|+..+. +|+ |.+.++ .+.+|+||+|+|.++
T Consensus 144 i~~~~l~~~l~~~~~~~Gv~--i~~~~~V~~i~~~~~----------~v~gv~~~~g------~i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 144 IDPRRLIQALAAEAQRAGVE--IRTGTEVTSIDVDGG----------RVTGVRTSDG------EIRADRVVLAAGAWS 203 (358)
T ss_dssp EEHHHHHHHHHHHHHHTT-E--EEESEEEEEEEEETT----------EEEEEEETTE------EEEECEEEE--GGGH
T ss_pred ccccchhhhhHHHHHHhhhh--ccccccccchhhccc----------cccccccccc------ccccceeEecccccc
Confidence 34678889999999999988 999999999998754 677 777654 589999999999643
No 168
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.77 E-value=2e-07 Score=94.73 Aligned_cols=103 Identities=24% Similarity=0.265 Sum_probs=78.2
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
.++|+|||||++|+.+|..|++.|.+|+++|+.+.+. |.
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l------------------------------------~~----- 208 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL------------------------------------PG----- 208 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC------------------------------------CC-----
Confidence 4689999999999999999999999999999976431 00
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG 171 (454)
...++.+.+.+..++.++. ++++++|.+|+..++ ...+...++ ...++.+|.||+|+|
T Consensus 209 -------~~~~~~~~~~~~l~~~gi~--i~~~~~v~~i~~~~~----------~v~v~~~~g---~~~~i~~D~vi~a~G 266 (461)
T TIGR01350 209 -------EDAEVSKVVAKALKKKGVK--ILTNTKVTAVEKNDD----------QVVYENKGG---ETETLTGEKVLVAVG 266 (461)
T ss_pred -------CCHHHHHHHHHHHHHcCCE--EEeCCEEEEEEEeCC----------EEEEEEeCC---cEEEEEeCEEEEecC
Confidence 0145666777777777877 899999999976532 444544332 133689999999999
Q ss_pred CCCCCCCC
Q 044575 172 HYSYPRLP 179 (454)
Q Consensus 172 ~~~~p~~p 179 (454)
..|+..
T Consensus 267 --~~p~~~ 272 (461)
T TIGR01350 267 --RKPNTE 272 (461)
T ss_pred --CcccCC
Confidence 777765
No 169
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.76 E-value=1.5e-07 Score=93.65 Aligned_cols=105 Identities=27% Similarity=0.339 Sum_probs=83.5
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
.++++|||||+.|+..|..+++.|.+|+|+|+.+.+ .|..
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i------------------------------------Lp~~---- 212 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI------------------------------------LPGE---- 212 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC------------------------------------CCcC----
Confidence 468999999999999999999999999999998764 1111
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG 171 (454)
.+++.+.+.+..++.++. ++++++|..++..++ .-.+++.++..+ ++++|+|++|+|
T Consensus 213 --------D~ei~~~~~~~l~~~gv~--i~~~~~v~~~~~~~~----------~v~v~~~~g~~~---~~~ad~vLvAiG 269 (454)
T COG1249 213 --------DPEISKELTKQLEKGGVK--ILLNTKVTAVEKKDD----------GVLVTLEDGEGG---TIEADAVLVAIG 269 (454)
T ss_pred --------CHHHHHHHHHHHHhCCeE--EEccceEEEEEecCC----------eEEEEEecCCCC---EEEeeEEEEccC
Confidence 178899999988886676 899999999987643 345566554322 678999999999
Q ss_pred CCCCCCCCCC
Q 044575 172 HYSYPRLPSI 181 (454)
Q Consensus 172 ~~~~p~~p~i 181 (454)
.+|++..+
T Consensus 270 --R~Pn~~~L 277 (454)
T COG1249 270 --RKPNTDGL 277 (454)
T ss_pred --CccCCCCC
Confidence 88887744
No 170
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.76 E-value=1.9e-07 Score=97.85 Aligned_cols=157 Identities=15% Similarity=0.118 Sum_probs=86.5
Q ss_pred ccCCCcEEEECcChHHHHHHHHHHHc-CCcEEEEeeCCCCCcccccCCCCCCC------------Ccc-------ccccc
Q 044575 9 CAQSKNVCVIGAGPSGLVAARELRKE-GHRVVVLEQNHDVGGQWLYDPNTDQT------------EVH-------SSVYA 68 (454)
Q Consensus 9 ~~~~~~VvIIGaG~aGl~aA~~l~~~-g~~v~vie~~~~~GG~w~~~~~~~~~------------~~~-------~~~~~ 68 (454)
|.+..||+||||||+||++|..|++. |.+|+|||+.+..--.-.-....+.. ... ...|.
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~ 108 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWK 108 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEc
Confidence 45678999999999999999999995 99999999986431000000000000 000 00010
Q ss_pred cceecCCccccc---cCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCC
Q 044575 69 SLRLTSPREIMG---YTDFPFVLKKGRDVR-RFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLI 144 (454)
Q Consensus 69 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~ 144 (454)
... .....+.. +.+.+... ...+ ...++..+.+.|.+.+.+.+....++++++|++++..++. ..
T Consensus 109 ~~~-~~~~~i~r~~~~~~~~~~~---~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~------~~- 177 (634)
T PRK08294 109 PDP-ADPSTIVRTGRVQDTEDGL---SEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEG------EY- 177 (634)
T ss_pred CCC-ccccceeccccccccCCCC---CCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCC------CC-
Confidence 000 00000000 00000000 0011 1234566778888877776643237889999999866421 01
Q ss_pred cEEEEEeecC---CCeEEEEEeCEEEEccCCCCCC
Q 044575 145 KWVVKSKEKK---ADKVVEEVFDAVVVATGHYSYP 176 (454)
Q Consensus 145 ~~~v~~~~~~---~~~~~~~~~d~vViAtG~~~~p 176 (454)
..+|++.+.+ ++...++++|+||-|-|.+|.-
T Consensus 178 ~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~V 212 (634)
T PRK08294 178 PVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRV 212 (634)
T ss_pred CEEEEEEECCCCCCCceEEEEeCEEEECCCCchHH
Confidence 4667776431 2334588999999999966543
No 171
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.75 E-value=8.8e-08 Score=99.77 Aligned_cols=48 Identities=23% Similarity=0.340 Sum_probs=38.8
Q ss_pred CCCCchhhccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCc
Q 044575 1 MVSDDHQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49 (454)
Q Consensus 1 m~~~~~~~~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG 49 (454)
||+.+. ......||||||||.||++||.++++.|.+|+|+||....+|
T Consensus 2 ~~~~~~-~~~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g 49 (598)
T PRK09078 2 MMSAYK-IIDHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRS 49 (598)
T ss_pred Cccccc-ccccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCc
Confidence 675542 123468999999999999999999999999999999865444
No 172
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.75 E-value=1.6e-07 Score=94.10 Aligned_cols=151 Identities=28% Similarity=0.325 Sum_probs=84.2
Q ss_pred cEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCC------C-CCC------C---------------Ccccc
Q 044575 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDP------N-TDQ------T---------------EVHSS 65 (454)
Q Consensus 14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~------~-~~~------~---------------~~~~~ 65 (454)
||||||+|.||++||.++++.|.+|+|+||.+..||.-.+.. . ... + .....
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD 80 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence 799999999999999999999999999999998777433221 0 000 0 00000
Q ss_pred ccccceecCCcccccc--CCCCCCC---------CCC---CC------C-----CCCCCHHHHHHHHHHHHHHhCCCccE
Q 044575 66 VYASLRLTSPREIMGY--TDFPFVL---------KKG---RD------V-----RRFPGHKELWLYLKDFCQRFGLREMI 120 (454)
Q Consensus 66 ~~~~~~~~~~~~~~~~--~~~~~~~---------~~~---~~------~-----~~~~~~~~~~~yl~~~~~~~~~~~~i 120 (454)
+...+..+.+..+-.+ .+.++.. ..+ .. . ........+...+.+.+++.++. +
T Consensus 81 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~--i 158 (417)
T PF00890_consen 81 LVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGVD--I 158 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTEE--E
T ss_pred hhhhhhhcccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHhhcCee--e
Confidence 0000000000000000 0111111 000 00 0 11225678889999999999977 9
Q ss_pred EeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCCC
Q 044575 121 RFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSY 175 (454)
Q Consensus 121 ~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~~ 175 (454)
+++++|+++...+.. ---|...+..++....+.++.||+|||.+..
T Consensus 159 ~~~~~~~~Li~e~g~---------V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 159 RFNTRVTDLITEDGR---------VTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp EESEEEEEEEEETTE---------EEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred eccceeeeEEEeCCc---------eeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 999999999886432 2334445334466778999999999996654
No 173
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.73 E-value=1e-07 Score=93.15 Aligned_cols=63 Identities=25% Similarity=0.279 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCCCC
Q 044575 99 GHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYP 176 (454)
Q Consensus 99 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~~p 176 (454)
...++...+.+.++..+.. +++|++|+.|++..++ .+.+.+.+++ .. ++++.||.|.|.++.+
T Consensus 151 ~~~~~t~~l~e~a~~~g~~--i~ln~eV~~i~~~~dg---------~~~~~~~~g~---~~-~~ak~Vin~AGl~Ad~ 213 (429)
T COG0579 151 DPGELTRALAEEAQANGVE--LRLNTEVTGIEKQSDG---------VFVLNTSNGE---ET-LEAKFVINAAGLYADP 213 (429)
T ss_pred cHHHHHHHHHHHHHHcCCE--EEecCeeeEEEEeCCc---------eEEEEecCCc---EE-EEeeEEEECCchhHHH
Confidence 3456666666667777887 9999999999998753 3555555543 22 8999999999987644
No 174
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.72 E-value=8e-08 Score=95.24 Aligned_cols=149 Identities=19% Similarity=0.140 Sum_probs=77.9
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC------CcccccCCCCCCCCcccccccccee-cCCcccccc----
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV------GGQWLYDPNTDQTEVHSSVYASLRL-TSPREIMGY---- 81 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~------GG~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---- 81 (454)
+||+|||||++|+++|..|++.|++|+|||+.+.. |......+.. ..+-...+++.+.. ..+...+.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~-~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 81 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTV-DLLREAGVDERMDREGLVHEGTEIAFDG 81 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHH-HHHHHCCChHHHHhcCceecceEEeeCC
Confidence 68999999999999999999999999999998741 1111100000 00000000111000 000000000
Q ss_pred --CCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeE
Q 044575 82 --TDFPFVLKKGRDVRR-FPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKV 158 (454)
Q Consensus 82 --~~~~~~~~~~~~~~~-~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 158 (454)
..+++..... .... ......+.+-|.+.+...+.. ++++.+++.+...+.. ...|++... +..
T Consensus 82 ~~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~~~~~~g~~--~~~~~~~v~~~~~~~~---------~~~V~~~~~--g~~ 147 (390)
T TIGR02360 82 QRFRIDLKALTG-GKTVMVYGQTEVTRDLMEAREAAGLT--TVYDADDVRLHDLAGD---------RPYVTFERD--GER 147 (390)
T ss_pred EEEEEeccccCC-CceEEEeCHHHHHHHHHHHHHhcCCe--EEEeeeeEEEEecCCC---------ccEEEEEEC--CeE
Confidence 0111111000 0000 112345556666666666655 7888887777543322 445666421 223
Q ss_pred EEEEeCEEEEccCCCCCC
Q 044575 159 VEEVFDAVVVATGHYSYP 176 (454)
Q Consensus 159 ~~~~~d~vViAtG~~~~p 176 (454)
.++++|.||-|.|.+|.-
T Consensus 148 ~~i~adlvIGADG~~S~V 165 (390)
T TIGR02360 148 HRLDCDFIAGCDGFHGVS 165 (390)
T ss_pred EEEEeCEEEECCCCchhh
Confidence 468899999999976643
No 175
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.71 E-value=2.1e-08 Score=75.31 Aligned_cols=68 Identities=29% Similarity=0.500 Sum_probs=55.1
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchhh--------hc-cCCCeEEcCceeEEecCC-c--EEEeCC
Q 044575 207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKV--------IS-KHNNLHLHPQIDCLREDG-R--VTFVDG 274 (454)
Q Consensus 207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~--------l~-~~~~i~~~~~v~~v~~~~-~--v~~~dG 274 (454)
+|+|||||++|+|+|..|++.+++|+++++++.+.+.+++. +. ..++++.+..++++..++ . |+++||
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 68999999999999999999999999999999986544332 22 235889999999997554 2 778776
No 176
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.70 E-value=5e-07 Score=91.72 Aligned_cols=105 Identities=23% Similarity=0.240 Sum_probs=79.9
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+..
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------ 209 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILP------------------------------------------ 209 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCC------------------------------------------
Confidence 36899999999999999999999999999999764310
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG 171 (454)
. ...++.+.+.+..++.++. ++++++|.+|+..++ ...+.+.++ +...++.+|.||+|+|
T Consensus 210 ----~--~~~~~~~~l~~~l~~~gV~--i~~~~~V~~i~~~~~----------~v~v~~~~g--g~~~~i~~D~vi~a~G 269 (462)
T PRK06416 210 ----G--EDKEISKLAERALKKRGIK--IKTGAKAKKVEQTDD----------GVTVTLEDG--GKEETLEADYVLVAVG 269 (462)
T ss_pred ----c--CCHHHHHHHHHHHHHcCCE--EEeCCEEEEEEEeCC----------EEEEEEEeC--CeeEEEEeCEEEEeeC
Confidence 0 0146667777777778887 999999999986532 455555543 2234789999999999
Q ss_pred CCCCCCCCC
Q 044575 172 HYSYPRLPS 180 (454)
Q Consensus 172 ~~~~p~~p~ 180 (454)
..|+...
T Consensus 270 --~~p~~~~ 276 (462)
T PRK06416 270 --RRPNTEN 276 (462)
T ss_pred --CccCCCC
Confidence 7777653
No 177
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.70 E-value=2.1e-07 Score=95.29 Aligned_cols=62 Identities=18% Similarity=0.107 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCCC
Q 044575 101 KELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSY 175 (454)
Q Consensus 101 ~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~~ 175 (454)
..+...+...+.+.|.. +..+++|+++...++ .|.|++.++. ++..++.++.||.|+|.++.
T Consensus 155 ~rl~~~l~~~a~~~Ga~--i~~~~~V~~i~~~~~----------~~~v~~~~~~-g~~~~i~a~~VVnAaG~wa~ 216 (502)
T PRK13369 155 ARLVVLNALDAAERGAT--ILTRTRCVSARREGG----------LWRVETRDAD-GETRTVRARALVNAAGPWVT 216 (502)
T ss_pred HHHHHHHHHHHHHCCCE--EecCcEEEEEEEcCC----------EEEEEEEeCC-CCEEEEEecEEEECCCccHH
Confidence 44445555667777877 888999999887532 6788877754 45567899999999997653
No 178
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.70 E-value=1.9e-07 Score=94.60 Aligned_cols=35 Identities=31% Similarity=0.496 Sum_probs=32.5
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV 47 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~ 47 (454)
+||+|||||.||++||..+++.|.+|+|+||....
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~ 36 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKK 36 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 68999999999999999999999999999997643
No 179
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.67 E-value=2.4e-07 Score=92.05 Aligned_cols=36 Identities=33% Similarity=0.582 Sum_probs=33.4
Q ss_pred CcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCC
Q 044575 13 KNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVG 48 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~G 48 (454)
+||+|||||.+|+++|.+|++. |.+|+|+|+.+.+|
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~ 40 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPA 40 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCccc
Confidence 6999999999999999999998 99999999987554
No 180
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.67 E-value=5.3e-07 Score=90.93 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=33.9
Q ss_pred CCCcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVG 48 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~G 48 (454)
..+||||||||.+|+++|..|++. +.+|+|+||.+.+|
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a 44 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPA 44 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcc
Confidence 457999999999999999999998 89999999955655
No 181
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.66 E-value=3e-07 Score=92.71 Aligned_cols=100 Identities=24% Similarity=0.296 Sum_probs=76.1
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~----------------------------------------- 195 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR----------------------------------------- 195 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC-----------------------------------------
Confidence 468999999999999999999999999999997643100
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG 171 (454)
...++...+.+..++.++. +.++++|++|+..+. ...+.. ++. ++.||.||+|+|
T Consensus 196 -------~~~~~~~~~~~~l~~~GI~--i~~~~~V~~i~~~~~----------~v~v~~-~g~-----~i~~D~viva~G 250 (438)
T PRK07251 196 -------EEPSVAALAKQYMEEDGIT--FLLNAHTTEVKNDGD----------QVLVVT-EDE-----TYRFDALLYATG 250 (438)
T ss_pred -------CCHHHHHHHHHHHHHcCCE--EEcCCEEEEEEecCC----------EEEEEE-CCe-----EEEcCEEEEeeC
Confidence 0145667777778888887 889999999986432 333332 222 689999999999
Q ss_pred CCCCCCCC
Q 044575 172 HYSYPRLP 179 (454)
Q Consensus 172 ~~~~p~~p 179 (454)
..|+..
T Consensus 251 --~~p~~~ 256 (438)
T PRK07251 251 --RKPNTE 256 (438)
T ss_pred --CCCCcc
Confidence 788764
No 182
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.66 E-value=4.2e-07 Score=90.83 Aligned_cols=35 Identities=31% Similarity=0.569 Sum_probs=32.8
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV 47 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~ 47 (454)
+||+|||||..|+++|.+|++.|.+|+|+|+++.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~ 36 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYA 36 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 58999999999999999999999999999998754
No 183
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.66 E-value=8.5e-07 Score=89.84 Aligned_cols=102 Identities=16% Similarity=0.227 Sum_probs=76.4
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+..
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~------------------------------------------ 207 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP------------------------------------------ 207 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc------------------------------------------
Confidence 46899999999999999999999999999998764310
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG 171 (454)
. ...++.+.+.+..++.++. ++++++|.+++..+. ...+. .. +...++.||.||+|+|
T Consensus 208 ----~--~d~e~~~~l~~~L~~~GI~--i~~~~~V~~i~~~~~----------~v~~~--~~--g~~~~i~~D~vivA~G 265 (458)
T PRK06912 208 ----G--EDEDIAHILREKLENDGVK--IFTGAALKGLNSYKK----------QALFE--YE--GSIQEVNAEFVLVSVG 265 (458)
T ss_pred ----c--ccHHHHHHHHHHHHHCCCE--EEECCEEEEEEEcCC----------EEEEE--EC--CceEEEEeCEEEEecC
Confidence 0 0156777777778888888 899999999975421 23332 21 2233689999999999
Q ss_pred CCCCCCCC
Q 044575 172 HYSYPRLP 179 (454)
Q Consensus 172 ~~~~p~~p 179 (454)
..|+..
T Consensus 266 --~~p~~~ 271 (458)
T PRK06912 266 --RKPRVQ 271 (458)
T ss_pred --CccCCC
Confidence 788765
No 184
>PRK06116 glutathione reductase; Validated
Probab=98.65 E-value=4e-07 Score=92.13 Aligned_cols=102 Identities=19% Similarity=0.179 Sum_probs=79.3
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+..
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------ 204 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR------------------------------------------ 204 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc------------------------------------------
Confidence 47899999999999999999999999999998763210
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG 171 (454)
. ...++.+.+.+..++.++. +.++++|.+++..+++ ...+.+.++. ++.+|.||+|+|
T Consensus 205 ----~--~~~~~~~~l~~~L~~~GV~--i~~~~~V~~i~~~~~g---------~~~v~~~~g~-----~i~~D~Vv~a~G 262 (450)
T PRK06116 205 ----G--FDPDIRETLVEEMEKKGIR--LHTNAVPKAVEKNADG---------SLTLTLEDGE-----TLTVDCLIWAIG 262 (450)
T ss_pred ----c--cCHHHHHHHHHHHHHCCcE--EECCCEEEEEEEcCCc---------eEEEEEcCCc-----EEEeCEEEEeeC
Confidence 0 0146667777778888887 8999999999865432 3566665543 689999999999
Q ss_pred CCCCCCCC
Q 044575 172 HYSYPRLP 179 (454)
Q Consensus 172 ~~~~p~~p 179 (454)
..|+..
T Consensus 263 --~~p~~~ 268 (450)
T PRK06116 263 --REPNTD 268 (450)
T ss_pred --CCcCCC
Confidence 777765
No 185
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.64 E-value=2.1e-07 Score=97.10 Aligned_cols=36 Identities=25% Similarity=0.379 Sum_probs=33.1
Q ss_pred CCcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDV 47 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~ 47 (454)
..||+|||||.||++||..+++. |.+|+|+||.+..
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~ 48 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIK 48 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcC
Confidence 47999999999999999999998 9999999998753
No 186
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.64 E-value=2.8e-07 Score=90.98 Aligned_cols=35 Identities=34% Similarity=0.425 Sum_probs=32.7
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD 46 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~ 46 (454)
.+||+|||||+.|+++|.+|++.|++|+|+|+...
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEecccC
Confidence 47999999999999999999999999999999764
No 187
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.64 E-value=1.3e-07 Score=94.83 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=34.1
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcc
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~ 50 (454)
..+||||||+|.||++||.++. .|.+|+|+||.+..||.
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~ 41 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN 41 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc
Confidence 3479999999999999999984 79999999998876653
No 188
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.64 E-value=2.3e-07 Score=95.63 Aligned_cols=155 Identities=23% Similarity=0.170 Sum_probs=85.7
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccC--------CCCCCC------Cccc-------ccccc
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYD--------PNTDQT------EVHS-------SVYAS 69 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~--------~~~~~~------~~~~-------~~~~~ 69 (454)
...||+|||+|.||++||..+++.|.+|+|+||....||.-.+. +...+. .+.. .....
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~ 94 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRS 94 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence 46899999999999999999999999999999988765422111 000000 0000 00000
Q ss_pred ceecCCccccc--cCCCCCCCCC----------CCCC--CC----CCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEE
Q 044575 70 LRLTSPREIMG--YTDFPFVLKK----------GRDV--RR----FPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGM 131 (454)
Q Consensus 70 ~~~~~~~~~~~--~~~~~~~~~~----------~~~~--~~----~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~ 131 (454)
+..+.+..+-. -.+.+|.... +... .. -.++.++.+.|.+.+++.++. +..++.|+++..
T Consensus 95 ~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~--i~~~~~v~~Li~ 172 (541)
T PRK07804 95 LVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLD--IREHALALDLLT 172 (541)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCE--EEECeEeeeeEE
Confidence 00001100000 0122222100 0000 00 124677888888888888876 888999999876
Q ss_pred cCCCccccCCcCCcEEEEEee---cCCCeEEEEEeCEEEEccCCCCC
Q 044575 132 LDCGELIIGNDLIKWVVKSKE---KKADKVVEEVFDAVVVATGHYSY 175 (454)
Q Consensus 132 ~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~~~d~vViAtG~~~~ 175 (454)
.+++. -.-+...+ +..+....+.++.||+|||.++.
T Consensus 173 ~~~g~--------v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~ 211 (541)
T PRK07804 173 DGTGA--------VAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQ 211 (541)
T ss_pred cCCCe--------EEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCC
Confidence 53210 11233321 11122346889999999997553
No 189
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.63 E-value=2.1e-07 Score=97.39 Aligned_cols=37 Identities=46% Similarity=0.493 Sum_probs=34.1
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVG 48 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~G 48 (454)
..||+|||||.||++||..+++.|.+|+|+||....|
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~ 44 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK 44 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence 4799999999999999999999999999999987554
No 190
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.63 E-value=1.5e-06 Score=88.54 Aligned_cols=105 Identities=20% Similarity=0.234 Sum_probs=78.8
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+..
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------ 220 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA------------------------------------------ 220 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC------------------------------------------
Confidence 47899999999999999999999999999999764310
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG 171 (454)
. ...++...+.+..++.++. +.++++|.+|+..+. ...+...+++ +...++.+|.|++|+|
T Consensus 221 ----~--~d~~~~~~~~~~l~~~gi~--i~~~~~v~~i~~~~~----------~v~v~~~~~~-g~~~~i~~D~vl~a~G 281 (475)
T PRK06327 221 ----A--ADEQVAKEAAKAFTKQGLD--IHLGVKIGEIKTGGK----------GVSVAYTDAD-GEAQTLEVDKLIVSIG 281 (475)
T ss_pred ----c--CCHHHHHHHHHHHHHcCcE--EEeCcEEEEEEEcCC----------EEEEEEEeCC-CceeEEEcCEEEEccC
Confidence 0 0145666677777777877 899999999986532 3445544432 3334789999999999
Q ss_pred CCCCCCCC
Q 044575 172 HYSYPRLP 179 (454)
Q Consensus 172 ~~~~p~~p 179 (454)
..|+..
T Consensus 282 --~~p~~~ 287 (475)
T PRK06327 282 --RVPNTD 287 (475)
T ss_pred --CccCCC
Confidence 788765
No 191
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.63 E-value=3.7e-07 Score=90.15 Aligned_cols=102 Identities=19% Similarity=0.262 Sum_probs=78.4
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK 90 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (454)
..++|+|||||+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 140 ~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~---------------------------------------- 179 (377)
T PRK04965 140 DAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS---------------------------------------- 179 (377)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch----------------------------------------
Confidence 3478999999999999999999999999999987643100
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575 91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT 170 (454)
Q Consensus 91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt 170 (454)
+ ...++..++.+..++.++. +.++++|.+++..+. .+.+.+.++. ++.+|.||+|+
T Consensus 180 ------~-~~~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~~----------~~~v~~~~g~-----~i~~D~vI~a~ 235 (377)
T PRK04965 180 ------L-MPPEVSSRLQHRLTEMGVH--LLLKSQLQGLEKTDS----------GIRATLDSGR-----SIEVDAVIAAA 235 (377)
T ss_pred ------h-CCHHHHHHHHHHHHhCCCE--EEECCeEEEEEccCC----------EEEEEEcCCc-----EEECCEEEECc
Confidence 0 0145566777777888887 888999999876432 5677776554 78999999999
Q ss_pred CCCCCCCC
Q 044575 171 GHYSYPRL 178 (454)
Q Consensus 171 G~~~~p~~ 178 (454)
| ..|+.
T Consensus 236 G--~~p~~ 241 (377)
T PRK04965 236 G--LRPNT 241 (377)
T ss_pred C--CCcch
Confidence 9 66654
No 192
>PRK12839 hypothetical protein; Provisional
Probab=98.63 E-value=3.5e-07 Score=94.67 Aligned_cols=47 Identities=30% Similarity=0.497 Sum_probs=41.4
Q ss_pred ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCC
Q 044575 9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDP 55 (454)
Q Consensus 9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~ 55 (454)
+....||+|||+|.+|++||..+++.|.+|+|||+.+.+||.+....
T Consensus 5 ~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~~ 51 (572)
T PRK12839 5 MTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAWSG 51 (572)
T ss_pred cCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccccC
Confidence 34568999999999999999999999999999999988888765543
No 193
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.62 E-value=2.7e-07 Score=95.85 Aligned_cols=38 Identities=26% Similarity=0.434 Sum_probs=34.5
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCc
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG 49 (454)
..||||||+|.||++||..+++.|.+|+|+||....+|
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g 44 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRS 44 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 47999999999999999999999999999999866544
No 194
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.62 E-value=4.1e-07 Score=89.94 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575 99 GHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS 174 (454)
Q Consensus 99 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~ 174 (454)
....+...+.+.++..++. +..+++|++++..++ .+.|++.++ ++.+|+||+|+|.++
T Consensus 143 ~p~~~~~~l~~~~~~~g~~--~~~~~~V~~i~~~~~----------~~~v~~~~~------~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 143 YAEKALRALQELAEAHGAT--VRDGTKVVEIEPTEL----------LVTVKTTKG------SYQANKLVVTAGAWT 200 (380)
T ss_pred cHHHHHHHHHHHHHHcCCE--EECCCeEEEEEecCC----------eEEEEeCCC------EEEeCEEEEecCcch
Confidence 4456777777778878877 888999999986532 566665432 688999999999654
No 195
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.62 E-value=3.3e-07 Score=95.37 Aligned_cols=38 Identities=32% Similarity=0.482 Sum_probs=34.2
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCc
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG 49 (454)
..||+|||+|.||++||..+++.|.+|+||||....+|
T Consensus 12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g 49 (591)
T PRK07057 12 KFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRS 49 (591)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence 57999999999999999999999999999999765444
No 196
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.62 E-value=7e-07 Score=90.58 Aligned_cols=106 Identities=22% Similarity=0.210 Sum_probs=78.3
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
.++|+|||||+.|+..|..+++.|.+|+++|+.+.+..
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~------------------------------------------ 211 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP------------------------------------------ 211 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC------------------------------------------
Confidence 47899999999999999999999999999998764310
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG 171 (454)
. ...++.+++.+..++.++. ++++++|.+++..++ ...+.+....++...++.+|.||+|+|
T Consensus 212 ----~--~d~~~~~~l~~~l~~~gV~--i~~~~~V~~i~~~~~----------~v~v~~~~~~~g~~~~i~~D~vi~a~G 273 (466)
T PRK06115 212 ----G--TDTETAKTLQKALTKQGMK--FKLGSKVTGATAGAD----------GVSLTLEPAAGGAAETLQADYVLVAIG 273 (466)
T ss_pred ----C--CCHHHHHHHHHHHHhcCCE--EEECcEEEEEEEcCC----------eEEEEEEEcCCCceeEEEeCEEEEccC
Confidence 0 0145667777777777887 899999999976432 444544422112234689999999999
Q ss_pred CCCCCCCC
Q 044575 172 HYSYPRLP 179 (454)
Q Consensus 172 ~~~~p~~p 179 (454)
..|+..
T Consensus 274 --~~pn~~ 279 (466)
T PRK06115 274 --RRPYTQ 279 (466)
T ss_pred --Cccccc
Confidence 777654
No 197
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.61 E-value=7.4e-07 Score=90.53 Aligned_cols=105 Identities=19% Similarity=0.276 Sum_probs=78.9
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~----------------------------------------- 204 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR----------------------------------------- 204 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc-----------------------------------------
Confidence 378999999999999999999999999999997643100
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG 171 (454)
...++...+.+..++.++. +.++++|.+++..++ ...+++...+ ...++.+|.||+|+|
T Consensus 205 -------~d~~~~~~l~~~l~~~gV~--i~~~~~V~~i~~~~~----------~~~v~~~~~~--~~~~i~~D~ViiA~G 263 (463)
T TIGR02053 205 -------EEPEISAAVEEALAEEGIE--VVTSAQVKAVSVRGG----------GKIITVEKPG--GQGEVEADELLVATG 263 (463)
T ss_pred -------cCHHHHHHHHHHHHHcCCE--EEcCcEEEEEEEcCC----------EEEEEEEeCC--CceEEEeCEEEEeEC
Confidence 0145667777777778887 899999999986532 4455554321 123689999999999
Q ss_pred CCCCCCCCC
Q 044575 172 HYSYPRLPS 180 (454)
Q Consensus 172 ~~~~p~~p~ 180 (454)
..|+...
T Consensus 264 --~~p~~~~ 270 (463)
T TIGR02053 264 --RRPNTDG 270 (463)
T ss_pred --CCcCCCC
Confidence 7887653
No 198
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.61 E-value=7.6e-07 Score=83.41 Aligned_cols=152 Identities=20% Similarity=0.289 Sum_probs=113.3
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
.++++|||||.-||..+.-..+.|.+||++|-.+++|+...
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD--------------------------------------- 251 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMD--------------------------------------- 251 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccC---------------------------------------
Confidence 47899999999999999999999999999999988876632
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG 171 (454)
.|+..-.++..++.++. +.++++|..+++..++ ...|++.+..+++..++++|.|.+|+|
T Consensus 252 ---------~Eisk~~qr~L~kQgik--F~l~tkv~~a~~~~dg---------~v~i~ve~ak~~k~~tle~DvlLVsiG 311 (506)
T KOG1335|consen 252 ---------GEISKAFQRVLQKQGIK--FKLGTKVTSATRNGDG---------PVEIEVENAKTGKKETLECDVLLVSIG 311 (506)
T ss_pred ---------HHHHHHHHHHHHhcCce--eEeccEEEEeeccCCC---------ceEEEEEecCCCceeEEEeeEEEEEcc
Confidence 57777788888888888 8999999999988765 677888877767788999999999999
Q ss_pred CCCCCCCCCCCCcCC------ccceeEEeecCCCCCCCCCCeEEEEcCCCCHHHHHHHHhhhcC
Q 044575 172 HYSYPRLPSIKGMDK------WKRKQMHSHIYRVPEPFRNEVVVVVGNSLSGQDISMELVEVAK 229 (454)
Q Consensus 172 ~~~~p~~p~i~G~~~------~~~~~~~~~~~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~~~ 229 (454)
.+|..-.+ |++. +.+++.-...+.. .--++-.||--.-|--+|...-+.|.
T Consensus 312 --RrP~t~GL-gle~iGi~~D~r~rv~v~~~f~t----~vP~i~~IGDv~~gpMLAhkAeeegI 368 (506)
T KOG1335|consen 312 --RRPFTEGL-GLEKIGIELDKRGRVIVNTRFQT----KVPHIYAIGDVTLGPMLAHKAEEEGI 368 (506)
T ss_pred --CcccccCC-Chhhcccccccccceeccccccc----cCCceEEecccCCcchhhhhhhhhch
Confidence 77776532 2221 2233332222211 12367778877777777776666553
No 199
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.61 E-value=5.4e-07 Score=91.48 Aligned_cols=101 Identities=24% Similarity=0.219 Sum_probs=78.7
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+.. .
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------~----- 213 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS------------------------------------F----- 213 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC------------------------------------c-----
Confidence 47899999999999999999999999999999764310 0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG 171 (454)
...++...+.+..++.++. +.++++|++++..++ .+.+++.++. ++.+|.||+|+|
T Consensus 214 -------~d~~~~~~l~~~l~~~gI~--v~~~~~v~~i~~~~~----------~~~v~~~~g~-----~i~~D~vi~a~G 269 (461)
T PRK05249 214 -------LDDEISDALSYHLRDSGVT--IRHNEEVEKVEGGDD----------GVIVHLKSGK-----KIKADCLLYANG 269 (461)
T ss_pred -------CCHHHHHHHHHHHHHcCCE--EEECCEEEEEEEeCC----------eEEEEECCCC-----EEEeCEEEEeec
Confidence 1156677777777777887 888999999986432 5556654443 689999999999
Q ss_pred CCCCCCCC
Q 044575 172 HYSYPRLP 179 (454)
Q Consensus 172 ~~~~p~~p 179 (454)
..|+..
T Consensus 270 --~~p~~~ 275 (461)
T PRK05249 270 --RTGNTD 275 (461)
T ss_pred --CCcccc
Confidence 777764
No 200
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.61 E-value=4e-07 Score=90.49 Aligned_cols=100 Identities=25% Similarity=0.270 Sum_probs=77.6
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
.++|+|||+|+.|+.+|..|++.|.+|+++|+.+.+.+..
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~---------------------------------------- 183 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN---------------------------------------- 183 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhh----------------------------------------
Confidence 4789999999999999999999999999999876431110
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG 171 (454)
...++.+++.+..++.++. ++++++|.+++. + . ...+.+.++. ++.+|.||+|+|
T Consensus 184 -------~~~~~~~~l~~~l~~~GV~--i~~~~~V~~i~~-~-~---------~~~v~l~~g~-----~i~aD~Vv~a~G 238 (396)
T PRK09754 184 -------APPPVQRYLLQRHQQAGVR--ILLNNAIEHVVD-G-E---------KVELTLQSGE-----TLQADVVIYGIG 238 (396)
T ss_pred -------cCHHHHHHHHHHHHHCCCE--EEeCCeeEEEEc-C-C---------EEEEEECCCC-----EEECCEEEECCC
Confidence 0145667777777788887 889999999875 2 1 4556666554 689999999999
Q ss_pred CCCCCCC
Q 044575 172 HYSYPRL 178 (454)
Q Consensus 172 ~~~~p~~ 178 (454)
..|+.
T Consensus 239 --~~pn~ 243 (396)
T PRK09754 239 --ISAND 243 (396)
T ss_pred --CChhh
Confidence 67764
No 201
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.60 E-value=5e-07 Score=93.68 Aligned_cols=36 Identities=36% Similarity=0.534 Sum_probs=33.2
Q ss_pred cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575 10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH 45 (454)
Q Consensus 10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~ 45 (454)
.+..+|+|||||++|+++|..|++.|++|+|||+.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 345899999999999999999999999999999975
No 202
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.60 E-value=1.8e-06 Score=87.71 Aligned_cols=105 Identities=26% Similarity=0.289 Sum_probs=78.5
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
.++|+|||||+.|+.+|..|++.|.+|+++|+.+.+.
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l------------------------------------------- 208 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL------------------------------------------- 208 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC-------------------------------------------
Confidence 3689999999999999999999999999999876431
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG 171 (454)
+. ...++...+.+..++.++. +.++++|.+++..+. ...+.+... ++...++.+|.||+|+|
T Consensus 209 ---~~--~d~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~~----------~~~v~~~~~-~g~~~~i~~D~vi~a~G 270 (466)
T PRK07818 209 ---PN--EDAEVSKEIAKQYKKLGVK--ILTGTKVESIDDNGS----------KVTVTVSKK-DGKAQELEADKVLQAIG 270 (466)
T ss_pred ---Cc--cCHHHHHHHHHHHHHCCCE--EEECCEEEEEEEeCC----------eEEEEEEec-CCCeEEEEeCEEEECcC
Confidence 00 0145667777777888888 999999999976432 344554421 12234689999999999
Q ss_pred CCCCCCCC
Q 044575 172 HYSYPRLP 179 (454)
Q Consensus 172 ~~~~p~~p 179 (454)
..|+..
T Consensus 271 --~~pn~~ 276 (466)
T PRK07818 271 --FAPRVE 276 (466)
T ss_pred --cccCCC
Confidence 777765
No 203
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.60 E-value=4.7e-07 Score=93.84 Aligned_cols=152 Identities=18% Similarity=0.124 Sum_probs=83.8
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcc--------cccCCC--CCCCCcc---------------ccc
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ--------WLYDPN--TDQTEVH---------------SSV 66 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~--------w~~~~~--~~~~~~~---------------~~~ 66 (454)
..||||||+|.||++||..+++.|.+|+|+||.+..+|. +..... .+.+... ...
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~ 84 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQDA 84 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCHHH
Confidence 479999999999999999999999999999998655442 211000 0110000 000
Q ss_pred cccceecCCccc--cccCCCCCCCCC----------CCCCC--CC---CCHHHHHHHHHHHHHHhCCCccEEeCeEEEEE
Q 044575 67 YASLRLTSPREI--MGYTDFPFVLKK----------GRDVR--RF---PGHKELWLYLKDFCQRFGLREMIRFNTRVEYV 129 (454)
Q Consensus 67 ~~~~~~~~~~~~--~~~~~~~~~~~~----------~~~~~--~~---~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v 129 (454)
...+..+.+..+ +.--+.+|.... +...+ .+ ..+..+...+.+.+...++. +.+++.++++
T Consensus 85 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~--i~~~~~~~~L 162 (566)
T PRK06452 85 AELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVD--FYNEWFSLDL 162 (566)
T ss_pred HHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCE--EEeCcEEEEE
Confidence 000011111100 000123332100 00000 01 13566777777777766776 8889999998
Q ss_pred EEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575 130 GMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS 174 (454)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~ 174 (454)
...+.. -.-|...+..++....+.++.||||||.++
T Consensus 163 i~~~g~---------v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 163 VTDNKK---------VVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred EEECCE---------EEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 764321 112334333334455789999999999665
No 204
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.60 E-value=2.7e-07 Score=95.24 Aligned_cols=44 Identities=27% Similarity=0.465 Sum_probs=40.7
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDP 55 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~ 55 (454)
..+||||||+| +|++||..+++.|.+|+|+||.+.+||...+..
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~~g 58 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTARSG 58 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccCcC
Confidence 46899999999 899999999999999999999999999887765
No 205
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.60 E-value=3e-07 Score=95.64 Aligned_cols=36 Identities=33% Similarity=0.463 Sum_probs=32.9
Q ss_pred cEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCc
Q 044575 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49 (454)
Q Consensus 14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG 49 (454)
||+|||+|.||++||..+++.|.+|+|+||....||
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g 36 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRS 36 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence 799999999999999999999999999999875543
No 206
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.59 E-value=6.6e-07 Score=90.44 Aligned_cols=42 Identities=31% Similarity=0.479 Sum_probs=38.0
Q ss_pred CCCcEEEECcChHHHHHHHHHHHc----CCcEEEEeeCCCCCcccc
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKE----GHRVVVLEQNHDVGGQWL 52 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~----g~~v~vie~~~~~GG~w~ 52 (454)
+.++|+|||||.|||+||.+|.+. |.+|+|+|+.+.+||...
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~ 66 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLD 66 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCcc
Confidence 357999999999999999999985 679999999999999764
No 207
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.59 E-value=6.8e-07 Score=90.24 Aligned_cols=101 Identities=22% Similarity=0.212 Sum_probs=77.7
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
.++|+|||+|+.|+.+|..+++.|.+|+++++.+.+..
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~------------------------------------------ 203 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR------------------------------------------ 203 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc------------------------------------------
Confidence 46899999999999999999999999999998763200
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG 171 (454)
. ...++.+.+.+..++.++. +.++++|.+++..++ ...+.+.++. ++.+|.||+|+|
T Consensus 204 ----~--~d~~~~~~l~~~l~~~gV~--i~~~~~v~~i~~~~~----------~~~v~~~~g~-----~i~~D~viva~G 260 (446)
T TIGR01424 204 ----G--FDDDMRALLARNMEGRGIR--IHPQTSLTSITKTDD----------GLKVTLSHGE-----EIVADVVLFATG 260 (446)
T ss_pred ----c--cCHHHHHHHHHHHHHCCCE--EEeCCEEEEEEEcCC----------eEEEEEcCCc-----EeecCEEEEeeC
Confidence 0 0156667777777888887 889999999976432 4456554443 689999999999
Q ss_pred CCCCCCCC
Q 044575 172 HYSYPRLP 179 (454)
Q Consensus 172 ~~~~p~~p 179 (454)
..|+..
T Consensus 261 --~~pn~~ 266 (446)
T TIGR01424 261 --RSPNTK 266 (446)
T ss_pred --CCcCCC
Confidence 777654
No 208
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.58 E-value=2.9e-07 Score=89.01 Aligned_cols=127 Identities=19% Similarity=0.212 Sum_probs=71.7
Q ss_pred cEEEECcChHHHHHHHHHHHcCCcEEEE-eeCCCCCcccccCCCCCCC-------------Cccccc-----cccc---e
Q 044575 14 NVCVIGAGPSGLVAARELRKEGHRVVVL-EQNHDVGGQWLYDPNTDQT-------------EVHSSV-----YASL---R 71 (454)
Q Consensus 14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vi-e~~~~~GG~w~~~~~~~~~-------------~~~~~~-----~~~~---~ 71 (454)
||+|||||.||..||..+++.|.+|+|+ .+.+.+|.. .|.|+. .+.+.+ ...+ .
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~----~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~ 76 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEM----SCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRM 76 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT------SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccc----cchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhc
Confidence 7999999999999999999999999999 455555432 222220 000000 0000 0
Q ss_pred ecCCccccccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEE
Q 044575 72 LTSPREIMGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKS 150 (454)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~ 150 (454)
.|..+. +... ....-..+..+.+++++.++.. ++. ..+.+|++|...++. -+-|.+
T Consensus 77 lN~skG---pav~--------a~r~qvDr~~y~~~~~~~l~~~~nl~---i~~~~V~~l~~e~~~---------v~GV~~ 133 (392)
T PF01134_consen 77 LNRSKG---PAVH--------ALRAQVDRDKYSRAMREKLESHPNLT---IIQGEVTDLIVENGK---------VKGVVT 133 (392)
T ss_dssp ESTTS----GGCT--------EEEEEE-HHHHHHHHHHHHHTSTTEE---EEES-EEEEEECTTE---------EEEEEE
T ss_pred ccccCC---CCcc--------chHhhccHHHHHHHHHHHHhcCCCeE---EEEcccceEEecCCe---------EEEEEe
Confidence 111100 0000 0111245678888888888763 343 357899999876543 455666
Q ss_pred eecCCCeEEEEEeCEEEEccCC
Q 044575 151 KEKKADKVVEEVFDAVVVATGH 172 (454)
Q Consensus 151 ~~~~~~~~~~~~~d~vViAtG~ 172 (454)
.++. .+.+|.||+|||.
T Consensus 134 ~~g~-----~~~a~~vVlaTGt 150 (392)
T PF01134_consen 134 KDGE-----EIEADAVVLATGT 150 (392)
T ss_dssp TTSE-----EEEECEEEE-TTT
T ss_pred CCCC-----EEecCEEEEeccc
Confidence 6554 7899999999993
No 209
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.58 E-value=4.3e-07 Score=95.17 Aligned_cols=37 Identities=30% Similarity=0.328 Sum_probs=33.8
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVG 48 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~G 48 (454)
..||+|||||.||++||..+++.|.+|+|+||...+|
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~ 71 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPR 71 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 4799999999999999999999999999999876654
No 210
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.57 E-value=6e-07 Score=91.02 Aligned_cols=65 Identities=22% Similarity=0.223 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575 99 GHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS 174 (454)
Q Consensus 99 ~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~ 174 (454)
....+...+.+.+++.++. ++++++|++++..+++ .|.+++.+..++...++.+|+||+|+|.++
T Consensus 176 dp~~l~~aL~~~a~~~Gv~--i~~~t~V~~i~~~~~~---------~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 176 DFGALTKQLLGYLVQNGTT--IRFGHEVRNLKRQSDG---------SWTVTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred CHHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCCC---------eEEEEEeeccCCceEEEECCEEEECCCcch
Confidence 4456667777777777877 9999999999875433 688876543223334689999999999765
No 211
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.57 E-value=4.7e-07 Score=94.57 Aligned_cols=155 Identities=17% Similarity=0.147 Sum_probs=86.1
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccC--------CCCCCCCcccc---------------ccc
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYD--------PNTDQTEVHSS---------------VYA 68 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~--------~~~~~~~~~~~---------------~~~ 68 (454)
..||+|||+|.||++||..+++.|.+|+|+||....||..... ...+.+..... ...
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~lv~ 108 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDAIQ 108 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHHHH
Confidence 5799999999999999999999999999999987655432111 00011100000 000
Q ss_pred cceecCCcccccc--CCCCCCCCC---------CCCC-----------CC---CCCHHHHHHHHHHHHHHhCCCccEEeC
Q 044575 69 SLRLTSPREIMGY--TDFPFVLKK---------GRDV-----------RR---FPGHKELWLYLKDFCQRFGLREMIRFN 123 (454)
Q Consensus 69 ~~~~~~~~~~~~~--~~~~~~~~~---------~~~~-----------~~---~~~~~~~~~yl~~~~~~~~~~~~i~~~ 123 (454)
.+..+.+..+-.+ -+.+|.... +... .. -.++..+...|.+.+.+.++. +..+
T Consensus 109 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~--i~~~ 186 (617)
T PTZ00139 109 YMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCN--FFIE 186 (617)
T ss_pred HHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCE--EEec
Confidence 0000011100000 122221100 0000 00 014568888888888888877 8899
Q ss_pred eEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCCCC
Q 044575 124 TRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYP 176 (454)
Q Consensus 124 ~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~~p 176 (454)
+.++++...+++. -.-|...+..++....+.++.||+|||.+...
T Consensus 187 ~~~~~Li~~~~g~--------v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 231 (617)
T PTZ00139 187 YFALDLIMDEDGE--------CRGVIAMSMEDGSIHRFRAHYTVIATGGYGRA 231 (617)
T ss_pred eEEEEEEECCCCE--------EEEEEEEECCCCeEEEEECCcEEEeCCCCccc
Confidence 9999977532220 11133323223455678999999999976543
No 212
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.57 E-value=6.1e-07 Score=93.80 Aligned_cols=155 Identities=15% Similarity=0.132 Sum_probs=86.0
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcc--------cccCCCCCCCCc---------------cccccc
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ--------WLYDPNTDQTEV---------------HSSVYA 68 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~--------w~~~~~~~~~~~---------------~~~~~~ 68 (454)
..||+|||+|.||++||..+++.|.+|+|+||....||. +......+.+.. ......
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~lv~ 129 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQ 129 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHHHH
Confidence 579999999999999999999999999999998765543 211110011000 000000
Q ss_pred cceecCCcccccc--CCCCCCCCC---------CCC-----------CCCC---CCHHHHHHHHHHHHHHhCCCccEEeC
Q 044575 69 SLRLTSPREIMGY--TDFPFVLKK---------GRD-----------VRRF---PGHKELWLYLKDFCQRFGLREMIRFN 123 (454)
Q Consensus 69 ~~~~~~~~~~~~~--~~~~~~~~~---------~~~-----------~~~~---~~~~~~~~yl~~~~~~~~~~~~i~~~ 123 (454)
.+..+.+..+-.+ -+.+|.... +.. ...+ .++..+...|.+.+.+.++. +..+
T Consensus 130 ~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~--i~~~ 207 (635)
T PLN00128 130 YMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQ--FFVE 207 (635)
T ss_pred HHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCCCE--EEEe
Confidence 1111111111111 123332100 000 0000 14567778888877777776 8889
Q ss_pred eEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCCCC
Q 044575 124 TRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYP 176 (454)
Q Consensus 124 ~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~~p 176 (454)
+.++++...+++. -.-|...+..++....+.++.||+|||.+...
T Consensus 208 ~~~~~Li~~~~g~--------v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~ 252 (635)
T PLN00128 208 YFALDLIMDSDGA--------CQGVIALNMEDGTLHRFRAHSTILATGGYGRA 252 (635)
T ss_pred eEEEEEEEcCCCE--------EEEEEEEEcCCCeEEEEEcCeEEECCCCCccc
Confidence 9998876542221 11233333223445678999999999976543
No 213
>PRK06370 mercuric reductase; Validated
Probab=98.57 E-value=1.1e-06 Score=89.27 Aligned_cols=104 Identities=21% Similarity=0.264 Sum_probs=78.1
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~----------------------------------------- 209 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR----------------------------------------- 209 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc-----------------------------------------
Confidence 478999999999999999999999999999997643100
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG 171 (454)
...++.+++.+..++.++. +.++++|.+++..++ ...+.+...+ ...++.+|.||+|+|
T Consensus 210 -------~~~~~~~~l~~~l~~~GV~--i~~~~~V~~i~~~~~----------~~~v~~~~~~--~~~~i~~D~Vi~A~G 268 (463)
T PRK06370 210 -------EDEDVAAAVREILEREGID--VRLNAECIRVERDGD----------GIAVGLDCNG--GAPEITGSHILVAVG 268 (463)
T ss_pred -------cCHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCC----------EEEEEEEeCC--CceEEEeCEEEECcC
Confidence 0145667777778888887 899999999986532 3344443211 123689999999999
Q ss_pred CCCCCCCC
Q 044575 172 HYSYPRLP 179 (454)
Q Consensus 172 ~~~~p~~p 179 (454)
..|+..
T Consensus 269 --~~pn~~ 274 (463)
T PRK06370 269 --RVPNTD 274 (463)
T ss_pred --CCcCCC
Confidence 777764
No 214
>PLN02985 squalene monooxygenase
Probab=98.56 E-value=1.6e-06 Score=88.65 Aligned_cols=36 Identities=36% Similarity=0.584 Sum_probs=33.2
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD 46 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~ 46 (454)
..+||+|||||++|+++|..|++.|.+|+|+|+...
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 468999999999999999999999999999999753
No 215
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.56 E-value=5.1e-07 Score=92.10 Aligned_cols=149 Identities=22% Similarity=0.183 Sum_probs=81.5
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCC------CCCCC--------Ccccc-------ccccce
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDP------NTDQT--------EVHSS-------VYASLR 71 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~------~~~~~--------~~~~~-------~~~~~~ 71 (454)
.||+|||+|.||++||..+++.|. |+|+||.+..||.-.+.. ..+.+ .+... ....+.
T Consensus 3 ~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~ 81 (488)
T TIGR00551 3 CDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFVV 81 (488)
T ss_pred ccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHHH
Confidence 699999999999999999999997 999999876554322110 00000 00000 000000
Q ss_pred ecCCcccccc--CCCCCCCC----------CCCCCCC-----CCCHHHHHHHHHHHHHH-hCCCccEEeCeEEEEEEEcC
Q 044575 72 LTSPREIMGY--TDFPFVLK----------KGRDVRR-----FPGHKELWLYLKDFCQR-FGLREMIRFNTRVEYVGMLD 133 (454)
Q Consensus 72 ~~~~~~~~~~--~~~~~~~~----------~~~~~~~-----~~~~~~~~~yl~~~~~~-~~~~~~i~~~~~V~~v~~~~ 133 (454)
.+.+..+-.+ -+.+|... .+...+. -.++..+...|.+.+++ .++. +.+++.|+++...+
T Consensus 82 ~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~--i~~~~~v~~l~~~~ 159 (488)
T TIGR00551 82 SDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIR--IIEGENALDLLIET 159 (488)
T ss_pred HhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcE--EEECeEeeeeeccC
Confidence 0000000000 12222210 0000000 11456788888887776 4776 89999999987543
Q ss_pred CCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCCC
Q 044575 134 CGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSY 175 (454)
Q Consensus 134 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~~ 175 (454)
+. -.-|...+. +....+.++.||+|||.++.
T Consensus 160 g~---------v~Gv~~~~~--~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 160 GR---------VVGVWVWNR--ETVETCHADAVVLATGGAGK 190 (488)
T ss_pred CE---------EEEEEEEEC--CcEEEEEcCEEEECCCcccC
Confidence 21 122334332 22346899999999997654
No 216
>PRK08275 putative oxidoreductase; Provisional
Probab=98.56 E-value=4.6e-07 Score=93.81 Aligned_cols=153 Identities=16% Similarity=0.127 Sum_probs=82.4
Q ss_pred CCcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCC-cccccC--C----CCC-CCC---------------ccccc
Q 044575 12 SKNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVG-GQWLYD--P----NTD-QTE---------------VHSSV 66 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~G-G~w~~~--~----~~~-~~~---------------~~~~~ 66 (454)
.+||+|||||.||++||..+++. |.+|+|+||.+..+ |..... . ..+ ... .....
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~~ 88 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQKA 88 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHHH
Confidence 47999999999999999999987 68999999987532 221110 0 000 000 00000
Q ss_pred cccceecCCcccccc--CCCCCCCC-CC-------CCCC----CCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEc
Q 044575 67 YASLRLTSPREIMGY--TDFPFVLK-KG-------RDVR----RFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGML 132 (454)
Q Consensus 67 ~~~~~~~~~~~~~~~--~~~~~~~~-~~-------~~~~----~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~ 132 (454)
...+..+.+..+-.+ .+.++... .+ .... ....+..+.+.|.+.+++.++. +.+++.|+++...
T Consensus 89 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~--i~~~~~v~~Li~~ 166 (554)
T PRK08275 89 VYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVL--ITNRIMATRLLTD 166 (554)
T ss_pred HHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCE--EEcceEEEEEEEc
Confidence 000000000000000 11222110 00 0000 1124667888888888888877 8999999998764
Q ss_pred CCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575 133 DCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS 174 (454)
Q Consensus 133 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~ 174 (454)
+++. -.-|...+..++....+.++.||+|||.++
T Consensus 167 ~~g~--------v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 167 ADGR--------VAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred CCCe--------EEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 2220 111222222223345688999999999654
No 217
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.56 E-value=4.3e-07 Score=94.36 Aligned_cols=45 Identities=29% Similarity=0.468 Sum_probs=39.8
Q ss_pred hhccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccc
Q 044575 7 QQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQW 51 (454)
Q Consensus 7 ~~~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w 51 (454)
..+....||||||+|.||++||..+++.|.+|+|+||.+..||..
T Consensus 6 ~~~~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t 50 (584)
T PRK12835 6 QNFDREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGST 50 (584)
T ss_pred CCccCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchH
Confidence 345567899999999999999999999999999999998888753
No 218
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.55 E-value=3.9e-07 Score=92.32 Aligned_cols=34 Identities=32% Similarity=0.632 Sum_probs=31.6
Q ss_pred CCcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNH 45 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~ 45 (454)
..||+|||||..|+++|.+|++. |.+|+|+|++.
T Consensus 24 ~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 24 QADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred eeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 57999999999999999999998 89999999864
No 219
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.55 E-value=6.1e-07 Score=95.09 Aligned_cols=35 Identities=26% Similarity=0.498 Sum_probs=32.6
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV 47 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~ 47 (454)
+||+|||||.+|+++|.+|++.|.+|+|+|+...+
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~ 295 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADEAP 295 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCc
Confidence 69999999999999999999999999999997544
No 220
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.55 E-value=9.1e-07 Score=89.31 Aligned_cols=103 Identities=18% Similarity=0.200 Sum_probs=78.0
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
.++|+|||||+.|+..|..|++.|.+|+++++.+.+..
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~------------------------------------------ 203 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR------------------------------------------ 203 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc------------------------------------------
Confidence 47899999999999999999999999999998764310
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG 171 (454)
.+ ..++.+.+.+..+..++. +++++.|.+|+....+ ...+.+.++ ...+.+|.||+|+|
T Consensus 204 ----~~--d~~~~~~~~~~l~~~gI~--i~~~~~v~~i~~~~~~---------~~~v~~~~g----~~~i~~D~vi~a~G 262 (450)
T TIGR01421 204 ----SF--DSMISETITEEYEKEGIN--VHKLSKPVKVEKTVEG---------KLVIHFEDG----KSIDDVDELIWAIG 262 (450)
T ss_pred ----cc--CHHHHHHHHHHHHHcCCE--EEcCCEEEEEEEeCCc---------eEEEEECCC----cEEEEcCEEEEeeC
Confidence 00 145667777777777887 8999999999864321 244555433 12689999999999
Q ss_pred CCCCCCCC
Q 044575 172 HYSYPRLP 179 (454)
Q Consensus 172 ~~~~p~~p 179 (454)
..|+..
T Consensus 263 --~~pn~~ 268 (450)
T TIGR01421 263 --RKPNTK 268 (450)
T ss_pred --CCcCcc
Confidence 777765
No 221
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.55 E-value=5.7e-07 Score=90.97 Aligned_cols=62 Identities=21% Similarity=0.171 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHHH----hCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575 99 GHKELWLYLKDFCQR----FGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS 174 (454)
Q Consensus 99 ~~~~~~~yl~~~~~~----~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~ 174 (454)
....+...+.+.+++ .+..-.++++++|++|+..++. .|.|++.++ ++.+|+||+|+|.++
T Consensus 209 d~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~---------~~~V~T~~G------~i~A~~VVvaAG~~S 273 (497)
T PTZ00383 209 DYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDS---------LYKIHTNRG------EIRARFVVVSACGYS 273 (497)
T ss_pred CHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCC---------eEEEEECCC------EEEeCEEEECcChhH
Confidence 445666666666766 5633238899999999876443 688877643 689999999999766
Q ss_pred C
Q 044575 175 Y 175 (454)
Q Consensus 175 ~ 175 (454)
.
T Consensus 274 ~ 274 (497)
T PTZ00383 274 L 274 (497)
T ss_pred H
Confidence 3
No 222
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.55 E-value=8.5e-07 Score=90.36 Aligned_cols=145 Identities=18% Similarity=0.169 Sum_probs=76.5
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceec-------CCccccccCCCC
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLT-------SPREIMGYTDFP 85 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 85 (454)
+||+|||||+||+.+|..+++.|.+|+|+|+....+|.+...+..... ....+...+..- .......|....
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~-a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln 79 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGP-AKGILVKEIDALGGLMGKAADKAGLQFRVLN 79 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCcccccccc-ccchhhhhhhcccchHHHHHHhhceeheecc
Confidence 589999999999999999999999999999975444332211111000 000000000000 000000011110
Q ss_pred CCCCCCC-CCCCCCCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEe
Q 044575 86 FVLKKGR-DVRRFPGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVF 163 (454)
Q Consensus 86 ~~~~~~~-~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 163 (454)
....+.. ....-..+..+...+++.+++. ++. .+...|+.+...+++. ...|.+.++. .+.+
T Consensus 80 ~skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~---Ile~~Vv~li~e~~g~--------V~GV~t~~G~-----~I~A 143 (617)
T TIGR00136 80 SSKGPAVRATRAQIDKVLYRKAMRNALENQPNLS---LFQGEVEDLILEDNDE--------IKGVVTQDGL-----KFRA 143 (617)
T ss_pred cCCCCcccccHHhCCHHHHHHHHHHHHHcCCCcE---EEEeEEEEEEEecCCc--------EEEEEECCCC-----EEEC
Confidence 0000000 0011234556677777777766 343 3456777775542211 3456665543 7899
Q ss_pred CEEEEccCCCC
Q 044575 164 DAVVVATGHYS 174 (454)
Q Consensus 164 d~vViAtG~~~ 174 (454)
|.||+|||.+.
T Consensus 144 d~VILATGtfL 154 (617)
T TIGR00136 144 KAVIITTGTFL 154 (617)
T ss_pred CEEEEccCccc
Confidence 99999999653
No 223
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.55 E-value=6.1e-07 Score=92.63 Aligned_cols=35 Identities=29% Similarity=0.512 Sum_probs=32.7
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD 46 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~ 46 (454)
.+||+|||||..|+++|+.|++.|++|+|||+.+-
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~ 40 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGLRCILVERHDI 40 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 48999999999999999999999999999999653
No 224
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.55 E-value=3.9e-07 Score=94.70 Aligned_cols=38 Identities=26% Similarity=0.497 Sum_probs=33.2
Q ss_pred CCcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCCc
Q 044575 12 SKNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGG 49 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~GG 49 (454)
..||+|||||.||++||..+++. |.+|+|+||....||
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg 42 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRS 42 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCch
Confidence 36999999999999999999987 489999999876554
No 225
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.54 E-value=9e-08 Score=102.55 Aligned_cols=110 Identities=23% Similarity=0.298 Sum_probs=61.6
Q ss_pred cEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCC---CcccccCCCCCCCC--ccccccccceecC-Cccc--cccCC
Q 044575 14 NVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDV---GGQWLYDPNTDQTE--VHSSVYASLRLTS-PREI--MGYTD 83 (454)
Q Consensus 14 ~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~---GG~w~~~~~~~~~~--~~~~~~~~~~~~~-~~~~--~~~~~ 83 (454)
+|+||||||||+++|..|++. |++|+|+|+++.. |......+..-..+ ........+..+. .... +.+.+
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g 81 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFKG 81 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEECC
Confidence 799999999999999999998 8999999998753 33222221110000 0000000000000 0000 00000
Q ss_pred CCCCCCCCCCCCCC--CCHHHHHHHHHHHHHHhCCCccEEeCeEEEEE
Q 044575 84 FPFVLKKGRDVRRF--PGHKELWLYLKDFCQRFGLREMIRFNTRVEYV 129 (454)
Q Consensus 84 ~~~~~~~~~~~~~~--~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v 129 (454)
..... ....| ..+.++.+.|.+.+.+.++. ++++++|.++
T Consensus 82 ~~~~~----~g~~~~~i~R~~L~~~L~e~a~~~GV~--i~~g~~v~~i 123 (765)
T PRK08255 82 RRIRS----GGHGFAGIGRKRLLNILQARCEELGVK--LVFETEVPDD 123 (765)
T ss_pred EEEEE----CCeeEecCCHHHHHHHHHHHHHHcCCE--EEeCCccCch
Confidence 00000 11112 56789999999999988877 8889887654
No 226
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.54 E-value=7.3e-07 Score=92.81 Aligned_cols=37 Identities=30% Similarity=0.379 Sum_probs=32.5
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCc
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG 49 (454)
..||+|||||.||++||.++++. .+|+|+||....+|
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g 41 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS 41 (583)
T ss_pred eccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence 47999999999999999999876 89999999765444
No 227
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.53 E-value=9.8e-07 Score=88.68 Aligned_cols=100 Identities=21% Similarity=0.293 Sum_probs=75.7
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
.++|+|||||++|+.+|..|++.|.+|+++++.+.+.
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~------------------------------------------- 173 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERIL------------------------------------------- 173 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccC-------------------------------------------
Confidence 4789999999999999999999999999999876320
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG 171 (454)
.+. ...++..++.+..++.++. +.++++|.+|+..+ .. +...++. ++.||.||+|+|
T Consensus 174 --~~~--~~~~~~~~~~~~l~~~gV~--v~~~~~v~~i~~~~-----------~~-v~~~~g~-----~i~~D~vi~a~G 230 (427)
T TIGR03385 174 --NKL--FDEEMNQIVEEELKKHEIN--LRLNEEVDSIEGEE-----------RV-KVFTSGG-----VYQADMVILATG 230 (427)
T ss_pred --ccc--cCHHHHHHHHHHHHHcCCE--EEeCCEEEEEecCC-----------CE-EEEcCCC-----EEEeCEEEECCC
Confidence 000 0146667778888888888 88899999987532 32 3444443 689999999999
Q ss_pred CCCCCCCC
Q 044575 172 HYSYPRLP 179 (454)
Q Consensus 172 ~~~~p~~p 179 (454)
..|+.+
T Consensus 231 --~~p~~~ 236 (427)
T TIGR03385 231 --IKPNSE 236 (427)
T ss_pred --ccCCHH
Confidence 677654
No 228
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.53 E-value=9.4e-07 Score=91.97 Aligned_cols=45 Identities=33% Similarity=0.488 Sum_probs=40.1
Q ss_pred cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccC
Q 044575 10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYD 54 (454)
Q Consensus 10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~ 54 (454)
...+||+|||+|.+|+++|..++++|.+|+||||++.+||.....
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~ 54 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAWS 54 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcccccc
Confidence 346899999999999999999999999999999998888875544
No 229
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.52 E-value=4.5e-07 Score=93.72 Aligned_cols=152 Identities=16% Similarity=0.157 Sum_probs=82.1
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC-CCcccccCC------CCCCCCc---------------ccccccc
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD-VGGQWLYDP------NTDQTEV---------------HSSVYAS 69 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~-~GG~w~~~~------~~~~~~~---------------~~~~~~~ 69 (454)
..||+|||+|.||++||..+ +.|.+|+|+||... .||.-.... ..+.+.. .......
T Consensus 7 ~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv~~ 85 (543)
T PRK06263 7 ITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLVEI 85 (543)
T ss_pred ccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHHHH
Confidence 47999999999999999999 89999999999764 444321110 0000000 0000000
Q ss_pred ceecCCcccccc--CCCCCCCCC-C------CCCCCC--------CCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEc
Q 044575 70 LRLTSPREIMGY--TDFPFVLKK-G------RDVRRF--------PGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGML 132 (454)
Q Consensus 70 ~~~~~~~~~~~~--~~~~~~~~~-~------~~~~~~--------~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~ 132 (454)
+..+.+..+-.+ -+.+|.... + .....+ .++.++...|.+.+.+.++. +.+++.|+++...
T Consensus 86 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~--i~~~t~v~~Li~~ 163 (543)
T PRK06263 86 LVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIK--ILEEVMAIKLIVD 163 (543)
T ss_pred HHHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCE--EEeCeEeeeeEEe
Confidence 001111100000 122222100 0 000011 13567888888878777777 8999999998765
Q ss_pred CCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575 133 DCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS 174 (454)
Q Consensus 133 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~ 174 (454)
++.. -.-+...+..++....+.++.||+|||.+.
T Consensus 164 ~~~~--------v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 164 ENRE--------VIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred CCcE--------EEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 3210 111222221223345788999999999655
No 230
>PLN02507 glutathione reductase
Probab=98.52 E-value=1.4e-06 Score=89.05 Aligned_cols=101 Identities=21% Similarity=0.161 Sum_probs=78.1
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
.++|+|||||+.|+..|..+++.|.+|+++++.+.+.
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l------------------------------------------- 239 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL------------------------------------------- 239 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC-------------------------------------------
Confidence 4689999999999999999999999999999876320
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG 171 (454)
+. ...++.+.+.+..++.++. ++++++|.+++..++ ...+...++. ++.+|.|++|+|
T Consensus 240 ---~~--~d~~~~~~l~~~l~~~GI~--i~~~~~V~~i~~~~~----------~~~v~~~~g~-----~i~~D~vl~a~G 297 (499)
T PLN02507 240 ---RG--FDDEMRAVVARNLEGRGIN--LHPRTNLTQLTKTEG----------GIKVITDHGE-----EFVADVVLFATG 297 (499)
T ss_pred ---cc--cCHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEeCC----------eEEEEECCCc-----EEEcCEEEEeec
Confidence 00 1156777788888888887 899999999976432 4445544332 689999999999
Q ss_pred CCCCCCCC
Q 044575 172 HYSYPRLP 179 (454)
Q Consensus 172 ~~~~p~~p 179 (454)
..|+..
T Consensus 298 --~~pn~~ 303 (499)
T PLN02507 298 --RAPNTK 303 (499)
T ss_pred --CCCCCC
Confidence 777765
No 231
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.51 E-value=1.1e-06 Score=91.40 Aligned_cols=38 Identities=24% Similarity=0.301 Sum_probs=34.1
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCc
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG 49 (454)
..||||||+|.||++||.++++.|.+|+|+||....||
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g 40 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRS 40 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 35999999999999999999999999999999876543
No 232
>PRK07846 mycothione reductase; Reviewed
Probab=98.51 E-value=1.3e-06 Score=88.20 Aligned_cols=101 Identities=16% Similarity=0.168 Sum_probs=73.6
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+..
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~------------------------------------------ 203 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR------------------------------------------ 203 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc------------------------------------------
Confidence 47899999999999999999999999999999764310
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG 171 (454)
. ...++.+.+.+..+ .++. ++++++|.+++..+. ...+.+.++. ++.+|.||+|+|
T Consensus 204 ----~--~d~~~~~~l~~l~~-~~v~--i~~~~~v~~i~~~~~----------~v~v~~~~g~-----~i~~D~vl~a~G 259 (451)
T PRK07846 204 ----H--LDDDISERFTELAS-KRWD--VRLGRNVVGVSQDGS----------GVTLRLDDGS-----TVEADVLLVATG 259 (451)
T ss_pred ----c--cCHHHHHHHHHHHh-cCeE--EEeCCEEEEEEEcCC----------EEEEEECCCc-----EeecCEEEEEEC
Confidence 0 01445555555443 3555 888999999976432 3445554433 689999999999
Q ss_pred CCCCCCCCC
Q 044575 172 HYSYPRLPS 180 (454)
Q Consensus 172 ~~~~p~~p~ 180 (454)
..|+...
T Consensus 260 --~~pn~~~ 266 (451)
T PRK07846 260 --RVPNGDL 266 (451)
T ss_pred --CccCccc
Confidence 7887654
No 233
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.51 E-value=1.6e-06 Score=88.05 Aligned_cols=104 Identities=25% Similarity=0.277 Sum_probs=75.7
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
.++|+|||||+.|+.+|..|.+.|.+|++||+.+.+..
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~------------------------------------------ 211 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIP------------------------------------------ 211 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCC------------------------------------------
Confidence 36899999999999999999999999999999764310
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG 171 (454)
. ...++.+++.+..++. +. +.++++|.+++..++ ...++..+++ +...++.+|.||+|+|
T Consensus 212 ----~--~d~~~~~~~~~~l~~~-v~--i~~~~~v~~i~~~~~----------~~~v~~~~~~-~~~~~i~~D~vi~a~G 271 (471)
T PRK06467 212 ----A--ADKDIVKVFTKRIKKQ-FN--IMLETKVTAVEAKED----------GIYVTMEGKK-APAEPQRYDAVLVAVG 271 (471)
T ss_pred ----c--CCHHHHHHHHHHHhhc-eE--EEcCCEEEEEEEcCC----------EEEEEEEeCC-CcceEEEeCEEEEeec
Confidence 0 0145666666665554 55 888999999876532 4455554432 2234689999999999
Q ss_pred CCCCCCCC
Q 044575 172 HYSYPRLP 179 (454)
Q Consensus 172 ~~~~p~~p 179 (454)
.+|+..
T Consensus 272 --~~pn~~ 277 (471)
T PRK06467 272 --RVPNGK 277 (471)
T ss_pred --ccccCC
Confidence 788765
No 234
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.50 E-value=1.5e-06 Score=88.14 Aligned_cols=100 Identities=20% Similarity=0.224 Sum_probs=77.7
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCCC
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGR 92 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (454)
++++|||+|+.|+.+|..|++.|.+|+++++.+.+..
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------- 214 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP------------------------------------------- 214 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC-------------------------------------------
Confidence 6899999999999999999999999999998764310
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCC
Q 044575 93 DVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGH 172 (454)
Q Consensus 93 ~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~ 172 (454)
. ...++..++.+..++.++. +.++++|.+++..++ ...+.+.++. ++.+|.||+|+|
T Consensus 215 ---~--~d~~~~~~l~~~L~~~gV~--i~~~~~v~~v~~~~~----------~~~v~~~~g~-----~l~~D~vl~a~G- 271 (466)
T PRK07845 215 ---G--EDADAAEVLEEVFARRGMT--VLKRSRAESVERTGD----------GVVVTLTDGR-----TVEGSHALMAVG- 271 (466)
T ss_pred ---C--CCHHHHHHHHHHHHHCCcE--EEcCCEEEEEEEeCC----------EEEEEECCCc-----EEEecEEEEeec-
Confidence 0 0145667788888888887 888999999975432 4455554433 689999999999
Q ss_pred CCCCCCC
Q 044575 173 YSYPRLP 179 (454)
Q Consensus 173 ~~~p~~p 179 (454)
..|+..
T Consensus 272 -~~pn~~ 277 (466)
T PRK07845 272 -SVPNTA 277 (466)
T ss_pred -CCcCCC
Confidence 777765
No 235
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.50 E-value=9.1e-07 Score=89.08 Aligned_cols=97 Identities=18% Similarity=0.243 Sum_probs=75.0
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~----------------------------------------- 186 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL----------------------------------------- 186 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh-----------------------------------------
Confidence 368999999999999999999999999999987643100
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG 171 (454)
...++.+.+.+..++.++. ++++++|.+++.. .|++.++. ++.+|.|++|+|
T Consensus 187 -------~d~~~~~~l~~~l~~~gI~--i~~~~~v~~i~~~--------------~v~~~~g~-----~~~~D~vl~a~G 238 (438)
T PRK13512 187 -------MDADMNQPILDELDKREIP--YRLNEEIDAINGN--------------EVTFKSGK-----VEHYDMIIEGVG 238 (438)
T ss_pred -------cCHHHHHHHHHHHHhcCCE--EEECCeEEEEeCC--------------EEEECCCC-----EEEeCEEEECcC
Confidence 0146667777777888887 8899999998621 25554443 678999999999
Q ss_pred CCCCCCCC
Q 044575 172 HYSYPRLP 179 (454)
Q Consensus 172 ~~~~p~~p 179 (454)
..|+..
T Consensus 239 --~~pn~~ 244 (438)
T PRK13512 239 --THPNSK 244 (438)
T ss_pred --CCcChH
Confidence 777754
No 236
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.49 E-value=2e-06 Score=86.04 Aligned_cols=40 Identities=30% Similarity=0.461 Sum_probs=36.7
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcc
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~ 50 (454)
+.+||+|||||..|+.+|+.++..|++|+|+|+.+--.|+
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGT 50 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGT 50 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcc
Confidence 6799999999999999999999999999999998875554
No 237
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.48 E-value=2.7e-06 Score=86.37 Aligned_cols=65 Identities=20% Similarity=0.260 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHhC-CCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCCC
Q 044575 100 HKELWLYLKDFCQRFG-LREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSY 175 (454)
Q Consensus 100 ~~~~~~yl~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~~ 175 (454)
...+.+.+.+.+++.+ +. +.++++|++++..+++ .|.|++.+..++...++.+|+||+|+|.++.
T Consensus 182 ~~~l~~aL~~~a~~~Ggv~--i~~~teV~~I~~~~dg---------~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~ 247 (494)
T PRK05257 182 FGALTRQLVGYLQKQGNFE--LQLGHEVRDIKRNDDG---------SWTVTVKDLKTGEKRTVRAKFVFIGAGGGAL 247 (494)
T ss_pred HHHHHHHHHHHHHhCCCeE--EEeCCEEEEEEECCCC---------CEEEEEEEcCCCceEEEEcCEEEECCCcchH
Confidence 3466666777777665 56 8999999999876543 5888776422222235899999999997653
No 238
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.48 E-value=5.6e-07 Score=93.67 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=34.9
Q ss_pred CCcEEEECcChHHHHHHHHHHHcC---CcEEEEeeCCCCCcc
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEG---HRVVVLEQNHDVGGQ 50 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g---~~v~vie~~~~~GG~ 50 (454)
..||+|||||.||++||..+++.| .+|+|+||....||.
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~ 46 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSH 46 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCC
Confidence 479999999999999999999998 899999998766553
No 239
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.47 E-value=1.6e-07 Score=94.66 Aligned_cols=42 Identities=50% Similarity=0.726 Sum_probs=39.5
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL 52 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~ 52 (454)
+.++|+|||||.|||+||++|.+.|++|+|+|.++++||...
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~ 55 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIY 55 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeE
Confidence 467999999999999999999999999999999999999855
No 240
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.45 E-value=2.2e-06 Score=86.57 Aligned_cols=100 Identities=16% Similarity=0.189 Sum_probs=73.3
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
.++|+|||||+.|+.+|..|++.|.+|++|++.+.+...
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~----------------------------------------- 207 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH----------------------------------------- 207 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc-----------------------------------------
Confidence 478999999999999999999999999999987643100
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG 171 (454)
...++...+.++.+ .++. ++++++|.+++..+. ...+++.++. ++.+|.|++|+|
T Consensus 208 -------~d~~~~~~l~~~~~-~gI~--i~~~~~V~~i~~~~~----------~v~v~~~~g~-----~i~~D~vl~a~G 262 (452)
T TIGR03452 208 -------LDEDISDRFTEIAK-KKWD--IRLGRNVTAVEQDGD----------GVTLTLDDGS-----TVTADVLLVATG 262 (452)
T ss_pred -------cCHHHHHHHHHHHh-cCCE--EEeCCEEEEEEEcCC----------eEEEEEcCCC-----EEEcCEEEEeec
Confidence 01445555555443 3555 888999999986432 4455554433 689999999999
Q ss_pred CCCCCCCC
Q 044575 172 HYSYPRLP 179 (454)
Q Consensus 172 ~~~~p~~p 179 (454)
..|+..
T Consensus 263 --~~pn~~ 268 (452)
T TIGR03452 263 --RVPNGD 268 (452)
T ss_pred --cCcCCC
Confidence 777764
No 241
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.45 E-value=2.6e-06 Score=85.97 Aligned_cols=100 Identities=21% Similarity=0.293 Sum_probs=76.3
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
..+|+|||+|+.|+..|..|++.|.+|+++++.+.+.
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l------------------------------------------- 194 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL------------------------------------------- 194 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC-------------------------------------------
Confidence 4689999999999999999999999999999875331
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG 171 (454)
+.+ ..++...+.+.+++.++. ++++++|.+|+..+. ...+...++ ++.+|.|++|+|
T Consensus 195 ---~~~--~~~~~~~l~~~l~~~gV~--v~~~~~v~~i~~~~~----------~v~v~~~~g------~i~~D~vl~a~G 251 (441)
T PRK08010 195 ---PRE--DRDIADNIATILRDQGVD--IILNAHVERISHHEN----------QVQVHSEHA------QLAVDALLIASG 251 (441)
T ss_pred ---CCc--CHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCC----------EEEEEEcCC------eEEeCEEEEeec
Confidence 000 156667777788888888 889999999986532 444443221 578999999999
Q ss_pred CCCCCCCC
Q 044575 172 HYSYPRLP 179 (454)
Q Consensus 172 ~~~~p~~p 179 (454)
..|+..
T Consensus 252 --~~pn~~ 257 (441)
T PRK08010 252 --RQPATA 257 (441)
T ss_pred --CCcCCC
Confidence 777764
No 242
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.45 E-value=1.5e-06 Score=82.26 Aligned_cols=121 Identities=21% Similarity=0.246 Sum_probs=69.8
Q ss_pred CCCcEEEECcChHHHHHHHHHHHc------CCcEEEEeeCCCCCcccccCCCCCCC----Ccccc--ccccceecCCccc
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKE------GHRVVVLEQNHDVGGQWLYDPNTDQT----EVHSS--VYASLRLTSPREI 78 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~------g~~v~vie~~~~~GG~w~~~~~~~~~----~~~~~--~~~~~~~~~~~~~ 78 (454)
...||||||||||||+||.+|++. ..+|+|+||...+||.-....+.... +++.- .-..+.+.+.++-
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT~d~ 154 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTSDK 154 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcccccccccc
Confidence 468999999999999999999874 46899999999999875443332211 00000 0001111111111
Q ss_pred ccc----CCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcC
Q 044575 79 MGY----TDFPFVLK--KGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLD 133 (454)
Q Consensus 79 ~~~----~~~~~~~~--~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~ 133 (454)
+.| ..+|.|.. -.+...-..+-.++.++|-+.++.++++ |.-+..+..|-..+
T Consensus 155 ~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvE--iyPg~aaSevly~e 213 (621)
T KOG2415|consen 155 FKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVE--IYPGFAASEVLYDE 213 (621)
T ss_pred eeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCce--eccccchhheeEcC
Confidence 221 11222210 0012222246678999999999999988 55555555554443
No 243
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.45 E-value=1.6e-06 Score=85.24 Aligned_cols=34 Identities=29% Similarity=0.484 Sum_probs=31.7
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD 46 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~ 46 (454)
+||+|||||.+|+++|.+|++.|.+|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4899999999999999999999999999999753
No 244
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.45 E-value=4.3e-06 Score=86.58 Aligned_cols=44 Identities=34% Similarity=0.505 Sum_probs=38.8
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYD 54 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~ 54 (454)
...||+|||+|++|++||..+++.|.+|+||||.+.+||.....
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~~~ 49 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTARS 49 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcccccc
Confidence 35899999999999999999999999999999998888754443
No 245
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.44 E-value=2.6e-06 Score=86.47 Aligned_cols=102 Identities=22% Similarity=0.166 Sum_probs=76.3
Q ss_pred CCcEEEECcChHHHHHHHHHHHc---CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKE---GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVL 88 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~---g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (454)
.++|+|||||+.|+.+|..+... |.+|+|+++.+.+..
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~--------------------------------------- 227 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR--------------------------------------- 227 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc---------------------------------------
Confidence 47899999999999999766544 899999998764310
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEE
Q 044575 89 KKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVV 168 (454)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vVi 168 (454)
. -..++.+.+.+..++.++. +++++.|.+++..+++ ...+.+.++. ++.+|.||+
T Consensus 228 -------~--~d~~~~~~l~~~L~~~GI~--i~~~~~v~~i~~~~~~---------~~~v~~~~g~-----~i~~D~vl~ 282 (486)
T TIGR01423 228 -------G--FDSTLRKELTKQLRANGIN--IMTNENPAKVTLNADG---------SKHVTFESGK-----TLDVDVVMM 282 (486)
T ss_pred -------c--cCHHHHHHHHHHHHHcCCE--EEcCCEEEEEEEcCCc---------eEEEEEcCCC-----EEEcCEEEE
Confidence 0 0156777788888888887 8999999999865332 3345554433 689999999
Q ss_pred ccCCCCCCCCC
Q 044575 169 ATGHYSYPRLP 179 (454)
Q Consensus 169 AtG~~~~p~~p 179 (454)
|+| ..|+..
T Consensus 283 a~G--~~Pn~~ 291 (486)
T TIGR01423 283 AIG--RVPRTQ 291 (486)
T ss_pred eeC--CCcCcc
Confidence 999 777764
No 246
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.44 E-value=2.1e-06 Score=86.77 Aligned_cols=101 Identities=28% Similarity=0.304 Sum_probs=75.7
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+..
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------ 186 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP------------------------------------------ 186 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc------------------------------------------
Confidence 47899999999999999999999999999998653200
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG 171 (454)
..+ ..++.+++.+.+++.++. ++++++|.+++..+ . ...+... +. ++.+|.||+|+|
T Consensus 187 ---~~~--~~~~~~~l~~~l~~~gI~--v~~~~~v~~i~~~~-~---------~~~v~~~-~~-----~i~~d~vi~a~G 243 (444)
T PRK09564 187 ---DSF--DKEITDVMEEELRENGVE--LHLNEFVKSLIGED-K---------VEGVVTD-KG-----EYEADVVIVATG 243 (444)
T ss_pred ---hhc--CHHHHHHHHHHHHHCCCE--EEcCCEEEEEecCC-c---------EEEEEeC-CC-----EEEcCEEEECcC
Confidence 000 157778888888888887 88999999996432 1 2333332 22 689999999999
Q ss_pred CCCCCCCC
Q 044575 172 HYSYPRLP 179 (454)
Q Consensus 172 ~~~~p~~p 179 (454)
..|+.+
T Consensus 244 --~~p~~~ 249 (444)
T PRK09564 244 --VKPNTE 249 (444)
T ss_pred --CCcCHH
Confidence 677643
No 247
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.44 E-value=1.7e-06 Score=89.56 Aligned_cols=42 Identities=50% Similarity=0.788 Sum_probs=37.5
Q ss_pred cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC--CCCccc
Q 044575 10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH--DVGGQW 51 (454)
Q Consensus 10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~--~~GG~w 51 (454)
....||||||+|.|||+||..+++.|.+|+|+||.+ ..||.-
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s 45 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQA 45 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCce
Confidence 345899999999999999999999999999999998 677753
No 248
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.44 E-value=1.6e-06 Score=90.43 Aligned_cols=34 Identities=29% Similarity=0.359 Sum_probs=31.3
Q ss_pred EEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCC
Q 044575 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVG 48 (454)
Q Consensus 15 VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~G 48 (454)
|+|||+|.||++||..+++.|.+|+|+||.+.++
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~ 34 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPR 34 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCC
Confidence 6999999999999999999999999999987443
No 249
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.43 E-value=2.1e-06 Score=83.52 Aligned_cols=131 Identities=24% Similarity=0.367 Sum_probs=90.6
Q ss_pred CcEEEECcChHHHHHHHHHHHc-------------CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCcccc
Q 044575 13 KNVCVIGAGPSGLVAARELRKE-------------GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIM 79 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~-------------g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (454)
.+|+|+|||+.|+..|-+|.+. ..+|+|+|+.+.+
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I-------------------------------- 203 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI-------------------------------- 203 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh--------------------------------
Confidence 4799999999999999998653 1389999998765
Q ss_pred ccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEE
Q 044575 80 GYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVV 159 (454)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 159 (454)
.|. ..+++..|.+++.++.|++ +.+++.|++|+.. .|++.+++ .
T Consensus 204 ----Lp~------------~~~~l~~~a~~~L~~~GV~--v~l~~~Vt~v~~~--------------~v~~~~g~---~- 247 (405)
T COG1252 204 ----LPM------------FPPKLSKYAERALEKLGVE--VLLGTPVTEVTPD--------------GVTLKDGE---E- 247 (405)
T ss_pred ----ccC------------CCHHHHHHHHHHHHHCCCE--EEcCCceEEECCC--------------cEEEccCC---e-
Confidence 111 1168889999999999999 9999999999865 26666654 1
Q ss_pred EEEeCEEEEccCCCCCCCCCCCCCcCCc-cceeEEeecCCCCCCCCCCeEEEEcCC
Q 044575 160 EEVFDAVVVATGHYSYPRLPSIKGMDKW-KRKQMHSHIYRVPEPFRNEVVVVVGNS 214 (454)
Q Consensus 160 ~~~~d~vViAtG~~~~p~~p~i~G~~~~-~~~~~~~~~~~~~~~~~~k~vvVVG~G 214 (454)
++.++.+|=|+|....|..-.+-|.+.- .|++.-......+. -..|-++|--
T Consensus 248 ~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Grl~V~~~L~~~~---~~~IFa~GD~ 300 (405)
T COG1252 248 EIPADTVVWAAGVRASPLLKDLSGLETDRRGRLVVNPTLQVPG---HPDIFAAGDC 300 (405)
T ss_pred eEecCEEEEcCCCcCChhhhhcChhhhccCCCEEeCCCcccCC---CCCeEEEecc
Confidence 5999999999995444433343234322 34544443333332 2457777753
No 250
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.42 E-value=3.8e-06 Score=85.30 Aligned_cols=104 Identities=25% Similarity=0.266 Sum_probs=75.6
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~----------------------------------------- 207 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL----------------------------------------- 207 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-----------------------------------------
Confidence 478999999999999999999999999999997643110
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG 171 (454)
...++.+.+.+..++. +. ++++++|.+++..+.. ..+++..++ ...++.+|.||+|+|
T Consensus 208 -------~d~~~~~~~~~~l~~~-I~--i~~~~~v~~i~~~~~~---------~v~~~~~~~---~~~~i~~D~vi~a~G 265 (460)
T PRK06292 208 -------EDPEVSKQAQKILSKE-FK--IKLGAKVTSVEKSGDE---------KVEELEKGG---KTETIEADYVLVATG 265 (460)
T ss_pred -------hhHHHHHHHHHHHhhc-cE--EEcCCEEEEEEEcCCc---------eEEEEEcCC---ceEEEEeCEEEEccC
Confidence 0145666777766666 66 8899999999764321 223322222 234689999999999
Q ss_pred CCCCCCCCC
Q 044575 172 HYSYPRLPS 180 (454)
Q Consensus 172 ~~~~p~~p~ 180 (454)
..|+...
T Consensus 266 --~~p~~~~ 272 (460)
T PRK06292 266 --RRPNTDG 272 (460)
T ss_pred --CccCCCC
Confidence 7887763
No 251
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.41 E-value=1.4e-06 Score=89.23 Aligned_cols=38 Identities=26% Similarity=0.470 Sum_probs=33.7
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcc
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~ 50 (454)
..||+|||+|.||++||..+++ |.+|+|+||.+..||.
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~ 40 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSN 40 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCC
Confidence 4699999999999999999976 8999999998876654
No 252
>PRK07208 hypothetical protein; Provisional
Probab=98.41 E-value=2.9e-07 Score=93.93 Aligned_cols=43 Identities=51% Similarity=0.682 Sum_probs=39.9
Q ss_pred cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575 10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL 52 (454)
Q Consensus 10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~ 52 (454)
+..++|+|||||++||+||..|++.|++|+|+|+++.+||.+.
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~ 44 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISR 44 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 3457999999999999999999999999999999999999875
No 253
>PTZ00058 glutathione reductase; Provisional
Probab=98.40 E-value=4.2e-06 Score=86.13 Aligned_cols=103 Identities=16% Similarity=0.229 Sum_probs=76.9
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
.++|+|||||+.|+..|..|++.|.+|+++++.+.+.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il------------------------------------------- 273 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL------------------------------------------- 273 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc-------------------------------------------
Confidence 5789999999999999999999999999999976431
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG 171 (454)
+.+ .+++.+.+.+..++.++. +.+++.|.+|+..+.. ...+...++ ..++.+|.|++|+|
T Consensus 274 ---~~~--d~~i~~~l~~~L~~~GV~--i~~~~~V~~I~~~~~~---------~v~v~~~~~----~~~i~aD~VlvA~G 333 (561)
T PTZ00058 274 ---RKF--DETIINELENDMKKNNIN--IITHANVEEIEKVKEK---------NLTIYLSDG----RKYEHFDYVIYCVG 333 (561)
T ss_pred ---ccC--CHHHHHHHHHHHHHCCCE--EEeCCEEEEEEecCCC---------cEEEEECCC----CEEEECCEEEECcC
Confidence 000 156667777777778887 8999999999865322 233433322 12689999999999
Q ss_pred CCCCCCCC
Q 044575 172 HYSYPRLP 179 (454)
Q Consensus 172 ~~~~p~~p 179 (454)
..|+..
T Consensus 334 --r~Pn~~ 339 (561)
T PTZ00058 334 --RSPNTE 339 (561)
T ss_pred --CCCCcc
Confidence 677754
No 254
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.40 E-value=1.1e-05 Score=84.13 Aligned_cols=40 Identities=48% Similarity=0.596 Sum_probs=37.1
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccc
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQW 51 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w 51 (454)
..||||||+|++|++||..+++.|.+|+|+||.+.+||.-
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~ 48 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTT 48 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCcc
Confidence 5799999999999999999999999999999999888753
No 255
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.40 E-value=2.8e-06 Score=87.93 Aligned_cols=43 Identities=28% Similarity=0.502 Sum_probs=38.8
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYD 54 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~ 54 (454)
.+||||||+|.+|++||..+++.|.+|+|||+.+..||.....
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~~~s 48 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTAMS 48 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceecee
Confidence 5799999999999999999999999999999998888875444
No 256
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.40 E-value=2.5e-06 Score=89.30 Aligned_cols=39 Identities=28% Similarity=0.436 Sum_probs=34.7
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCc
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG 49 (454)
..+||+|||||..|.++|..|++.|++|+|||+.+..+|
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G 108 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG 108 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence 458999999999999999999999999999999854333
No 257
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.39 E-value=9.4e-07 Score=81.13 Aligned_cols=42 Identities=31% Similarity=0.525 Sum_probs=39.5
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccC
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYD 54 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~ 54 (454)
+|++|||||.+|+..|..|++.|.+|.|+||++++||.|.-.
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde 43 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDE 43 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccc
Confidence 799999999999999999999999999999999999998754
No 258
>PLN02815 L-aspartate oxidase
Probab=98.39 E-value=1.8e-06 Score=89.46 Aligned_cols=37 Identities=27% Similarity=0.383 Sum_probs=34.2
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCc
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG 49 (454)
..||||||+|.||++||..+++.| +|+|+||.+..||
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg 65 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES 65 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence 479999999999999999999999 9999999887665
No 259
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.39 E-value=2.4e-06 Score=88.68 Aligned_cols=39 Identities=26% Similarity=0.367 Sum_probs=34.3
Q ss_pred CCcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCCcc
Q 044575 12 SKNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGGQ 50 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~GG~ 50 (454)
..||+|||||.||++||..+++. |.+|+|+||....||.
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~ 43 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSH 43 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCC
Confidence 47999999999999999999987 5799999998776654
No 260
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.38 E-value=3.5e-07 Score=93.04 Aligned_cols=42 Identities=48% Similarity=0.631 Sum_probs=39.5
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccccc
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLY 53 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~ 53 (454)
.+||||||||++||+||..|+++|++|+|+||++.+||..+.
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t 44 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRART 44 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEE
Confidence 489999999999999999999999999999999999997764
No 261
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.38 E-value=2.1e-06 Score=89.32 Aligned_cols=39 Identities=21% Similarity=0.383 Sum_probs=34.1
Q ss_pred CCcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCCcc
Q 044575 12 SKNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGGQ 50 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~GG~ 50 (454)
..||+|||||.||++||..+++. |.+|+|+||....||.
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~ 44 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSH 44 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCC
Confidence 47999999999999999999987 4799999998766654
No 262
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.38 E-value=5.6e-06 Score=82.93 Aligned_cols=34 Identities=32% Similarity=0.567 Sum_probs=31.7
Q ss_pred cEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC
Q 044575 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV 47 (454)
Q Consensus 14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~ 47 (454)
||+|||||.+|+++|.+|++.|.+|+|+|+...+
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~ 35 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGP 35 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCch
Confidence 7999999999999999999999999999997544
No 263
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.37 E-value=3.6e-06 Score=84.00 Aligned_cols=101 Identities=32% Similarity=0.463 Sum_probs=78.7
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
.+++||||+|+.|+.+|..|++.|++|+++|+.+.+++...
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~--------------------------------------- 176 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL--------------------------------------- 176 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh---------------------------------------
Confidence 37999999999999999999999999999999887644321
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEE--EEEeecCCCeEEEEEeCEEEEc
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWV--VKSKEKKADKVVEEVFDAVVVA 169 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~d~vViA 169 (454)
. .++.+.+.+..+.+++. ++++..+..|+...+. ... +...++. .+.+|.++++
T Consensus 177 ------~--~~~~~~~~~~l~~~gi~--~~~~~~~~~i~~~~~~---------~~~~~~~~~~~~-----~~~~d~~~~~ 232 (415)
T COG0446 177 ------D--PEVAEELAELLEKYGVE--LLLGTKVVGVEGKGNT---------LVVERVVGIDGE-----EIKADLVIIG 232 (415)
T ss_pred ------h--HHHHHHHHHHHHHCCcE--EEeCCceEEEEcccCc---------ceeeEEEEeCCc-----EEEeeEEEEe
Confidence 0 46677888888888877 8899999999876532 111 3333333 7899999999
Q ss_pred cCCCCCCC
Q 044575 170 TGHYSYPR 177 (454)
Q Consensus 170 tG~~~~p~ 177 (454)
+| ..|+
T Consensus 233 ~g--~~p~ 238 (415)
T COG0446 233 PG--ERPN 238 (415)
T ss_pred ec--cccc
Confidence 99 7775
No 264
>PRK14727 putative mercuric reductase; Provisional
Probab=98.37 E-value=5.5e-06 Score=84.43 Aligned_cols=99 Identities=19% Similarity=0.219 Sum_probs=75.1
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
.++|+|||+|+.|+..|..|++.|.+|+++++.. + +
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~---l---------------------------------------- 223 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARST-L---L---------------------------------------- 223 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC-C---C----------------------------------------
Confidence 3689999999999999999999999999998742 1 0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG 171 (454)
+ ....++.+.+.+..++.++. +.++++|.+++..++ .+.+...++ ++.+|.||+|+|
T Consensus 224 ---~--~~d~~~~~~l~~~L~~~GV~--i~~~~~V~~i~~~~~----------~~~v~~~~g------~i~aD~VlvA~G 280 (479)
T PRK14727 224 ---F--REDPLLGETLTACFEKEGIE--VLNNTQASLVEHDDN----------GFVLTTGHG------ELRAEKLLISTG 280 (479)
T ss_pred ---C--cchHHHHHHHHHHHHhCCCE--EEcCcEEEEEEEeCC----------EEEEEEcCC------eEEeCEEEEccC
Confidence 0 01146677788888888887 888999999976432 455544321 578999999999
Q ss_pred CCCCCCCC
Q 044575 172 HYSYPRLP 179 (454)
Q Consensus 172 ~~~~p~~p 179 (454)
..|+..
T Consensus 281 --~~pn~~ 286 (479)
T PRK14727 281 --RHANTH 286 (479)
T ss_pred --CCCCcc
Confidence 777764
No 265
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.36 E-value=1.7e-06 Score=88.75 Aligned_cols=41 Identities=32% Similarity=0.399 Sum_probs=34.1
Q ss_pred CCCCchhhccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575 1 MVSDDHQQCAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD 46 (454)
Q Consensus 1 m~~~~~~~~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~ 46 (454)
||.++. ....||+|||+|.||++||.+++ +.+|+|+||.+.
T Consensus 1 ~~~~~~---~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 1 MMEDLR---ILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred CCcccc---CCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 665543 34589999999999999999996 569999999875
No 266
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.35 E-value=3.4e-06 Score=88.70 Aligned_cols=37 Identities=30% Similarity=0.333 Sum_probs=33.9
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVG 48 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~G 48 (454)
..||||||||.||++||.++++.|.+|+|+||.+..+
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~ 41 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKR 41 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 4799999999999999999999999999999977644
No 267
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.35 E-value=3.5e-06 Score=86.94 Aligned_cols=38 Identities=34% Similarity=0.496 Sum_probs=34.0
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcc
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~ 50 (454)
..||||||+|.||++||..+++. .+|+|+||....||.
T Consensus 8 ~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~ 45 (536)
T PRK09077 8 QCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGS 45 (536)
T ss_pred cCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCC
Confidence 47999999999999999999886 899999998876663
No 268
>PRK14694 putative mercuric reductase; Provisional
Probab=98.34 E-value=6.9e-06 Score=83.51 Aligned_cols=99 Identities=21% Similarity=0.273 Sum_probs=74.3
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
.++|+|||+|+.|+.+|..|++.|.+|+++++.. +- +
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~-~l------------------------------------~------ 214 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSR-VL------------------------------------S------ 214 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCC-CC------------------------------------C------
Confidence 4689999999999999999999999999998632 10 0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG 171 (454)
. ...++...+.+..++.++. ++++++|.+++..+. ...+... ++ ++.+|.||+|+|
T Consensus 215 ----~--~~~~~~~~l~~~l~~~GI~--v~~~~~v~~i~~~~~----------~~~v~~~-~~-----~i~~D~vi~a~G 270 (468)
T PRK14694 215 ----Q--EDPAVGEAIEAAFRREGIE--VLKQTQASEVDYNGR----------EFILETN-AG-----TLRAEQLLVATG 270 (468)
T ss_pred ----C--CCHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEcCC----------EEEEEEC-CC-----EEEeCEEEEccC
Confidence 0 1145667777777888887 888999999875432 3444432 22 589999999999
Q ss_pred CCCCCCCC
Q 044575 172 HYSYPRLP 179 (454)
Q Consensus 172 ~~~~p~~p 179 (454)
..|+..
T Consensus 271 --~~pn~~ 276 (468)
T PRK14694 271 --RTPNTE 276 (468)
T ss_pred --CCCCcC
Confidence 777765
No 269
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.34 E-value=4.8e-06 Score=86.68 Aligned_cols=44 Identities=34% Similarity=0.446 Sum_probs=39.8
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYD 54 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~ 54 (454)
..+||+|||+|++|++||..+++.|.+|+|+|+.+.+||.....
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~s 58 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTATS 58 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccccc
Confidence 35799999999999999999999999999999999888876554
No 270
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.32 E-value=8.6e-06 Score=85.14 Aligned_cols=109 Identities=21% Similarity=0.294 Sum_probs=76.3
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
.++|+|||||+.|+..|..|.+.|.+|++||+.+.+...
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~----------------------------------------- 350 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL----------------------------------------- 350 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccc-----------------------------------------
Confidence 468999999999999999999999999999997754100
Q ss_pred CCCCCCCCHHHHHHHHHHHH-HHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecC---C-C------eEEE
Q 044575 92 RDVRRFPGHKELWLYLKDFC-QRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKK---A-D------KVVE 160 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~-~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~---~-~------~~~~ 160 (454)
...++.+++.+.. ++.++. +++++.|.+|+..++.. ..++...+.. . + ...+
T Consensus 351 -------~d~eis~~l~~~ll~~~GV~--I~~~~~V~~I~~~~~~~--------~v~v~~~~~~~~~~~~~~~~~~~~~~ 413 (659)
T PTZ00153 351 -------LDADVAKYFERVFLKSKPVR--VHLNTLIEYVRAGKGNQ--------PVIIGHSERQTGESDGPKKNMNDIKE 413 (659)
T ss_pred -------CCHHHHHHHHHHHhhcCCcE--EEcCCEEEEEEecCCce--------EEEEEEeccccccccccccccccceE
Confidence 0145666666653 556777 89999999998653210 2334332211 0 0 1236
Q ss_pred EEeCEEEEccCCCCCCCCCC
Q 044575 161 EVFDAVVVATGHYSYPRLPS 180 (454)
Q Consensus 161 ~~~d~vViAtG~~~~p~~p~ 180 (454)
+.+|.|++|+| .+|+...
T Consensus 414 i~aD~VlvAtG--r~Pnt~~ 431 (659)
T PTZ00153 414 TYVDSCLVATG--RKPNTNN 431 (659)
T ss_pred EEcCEEEEEEC--cccCCcc
Confidence 89999999999 7887653
No 271
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.31 E-value=2.1e-06 Score=88.56 Aligned_cols=39 Identities=28% Similarity=0.331 Sum_probs=34.3
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcc
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQ 50 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~ 50 (454)
...||+|||+|.||++||.++. .|.+|+|+||.+..||.
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~ 46 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSA 46 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCc
Confidence 4589999999999999999996 59999999998876653
No 272
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.31 E-value=1.7e-06 Score=87.02 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCC
Q 044575 98 PGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGH 172 (454)
Q Consensus 98 ~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~ 172 (454)
..+..+.++|.+.+.+.|+. +..+ +|+.|...+++. -..|++.++. ++++|++|-|||.
T Consensus 151 lDR~~fd~~L~~~A~~~Gv~--~~~g-~V~~v~~~~~g~--------i~~v~~~~g~-----~i~ad~~IDASG~ 209 (454)
T PF04820_consen 151 LDRAKFDQFLRRHAEERGVE--VIEG-TVVDVELDEDGR--------ITAVRLDDGR-----TIEADFFIDASGR 209 (454)
T ss_dssp EEHHHHHHHHHHHHHHTT-E--EEET--EEEEEE-TTSE--------EEEEEETTSE-----EEEESEEEE-SGG
T ss_pred EeHHHHHHHHHHHHhcCCCE--EEeC-EEEEEEEcCCCC--------EEEEEECCCC-----EEEEeEEEECCCc
Confidence 46789999999999999987 4444 688888766421 2345554443 7899999999993
No 273
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.30 E-value=8.5e-06 Score=83.29 Aligned_cols=100 Identities=22% Similarity=0.192 Sum_probs=75.5
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
.++|+|||||+.|+.+|..|++.|.+|+++++. .+.
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l------------------------------------------- 217 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPL------------------------------------------- 217 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-ccc-------------------------------------------
Confidence 358999999999999999999999999999863 210
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG 171 (454)
+. ...++.+.+.+..++.++. +.+++.|.+++..++ ...+.+.++. ++.+|.||+|+|
T Consensus 218 ---~~--~d~~~~~~l~~~l~~~GV~--i~~~~~v~~v~~~~~----------~~~v~~~~g~-----~i~~D~vl~a~G 275 (499)
T PTZ00052 218 ---RG--FDRQCSEKVVEYMKEQGTL--FLEGVVPINIEKMDD----------KIKVLFSDGT-----TELFDTVLYATG 275 (499)
T ss_pred ---cc--CCHHHHHHHHHHHHHcCCE--EEcCCeEEEEEEcCC----------eEEEEECCCC-----EEEcCEEEEeeC
Confidence 00 0145667777778888887 888999988876532 3345554443 578999999999
Q ss_pred CCCCCCCC
Q 044575 172 HYSYPRLP 179 (454)
Q Consensus 172 ~~~~p~~p 179 (454)
..|+..
T Consensus 276 --~~pn~~ 281 (499)
T PTZ00052 276 --RKPDIK 281 (499)
T ss_pred --CCCCcc
Confidence 777765
No 274
>PLN02546 glutathione reductase
Probab=98.30 E-value=8.2e-06 Score=84.04 Aligned_cols=102 Identities=18% Similarity=0.174 Sum_probs=75.4
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
.++|+|||||+.|+..|..|.+.|.+|+++++.+.+...
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~----------------------------------------- 290 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG----------------------------------------- 290 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc-----------------------------------------
Confidence 478999999999999999999999999999987643100
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG 171 (454)
...++..++.+..++.++. +.++++|.++....++ ...+...+ .....+|.||+|+|
T Consensus 291 -------~d~~~~~~l~~~L~~~GV~--i~~~~~v~~i~~~~~g---------~v~v~~~~-----g~~~~~D~Viva~G 347 (558)
T PLN02546 291 -------FDEEVRDFVAEQMSLRGIE--FHTEESPQAIIKSADG---------SLSLKTNK-----GTVEGFSHVMFATG 347 (558)
T ss_pred -------cCHHHHHHHHHHHHHCCcE--EEeCCEEEEEEEcCCC---------EEEEEECC-----eEEEecCEEEEeec
Confidence 0156677777777888888 8889999999764332 33343321 11345899999999
Q ss_pred CCCCCCCC
Q 044575 172 HYSYPRLP 179 (454)
Q Consensus 172 ~~~~p~~p 179 (454)
..|+..
T Consensus 348 --~~Pnt~ 353 (558)
T PLN02546 348 --RKPNTK 353 (558)
T ss_pred --cccCCC
Confidence 777764
No 275
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.30 E-value=6e-06 Score=92.42 Aligned_cols=41 Identities=34% Similarity=0.514 Sum_probs=37.7
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccc
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQW 51 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w 51 (454)
...||||||+|.||++||.++++.|.+|+|+||.+..||.-
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s 448 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNS 448 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCch
Confidence 35899999999999999999999999999999999888753
No 276
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.30 E-value=1e-05 Score=82.39 Aligned_cols=103 Identities=18% Similarity=0.153 Sum_probs=76.5
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
..+++|||||+.|+.+|..|++.|.+|+++++. .+. +
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l------------------------------------~------ 216 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILL------------------------------------R------ 216 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-ccc------------------------------------c------
Confidence 368999999999999999999999999999873 220 0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG 171 (454)
. ...++.+++.+..++.++. +++++.+.+|+..++ ...|+..++. ...++.+|.||+|+|
T Consensus 217 ----~--~d~~~~~~l~~~L~~~gV~--i~~~~~v~~v~~~~~----------~~~v~~~~~~--~~~~i~~D~vl~a~G 276 (484)
T TIGR01438 217 ----G--FDQDCANKVGEHMEEHGVK--FKRQFVPIKVEQIEA----------KVKVTFTDST--NGIEEEYDTVLLAIG 276 (484)
T ss_pred ----c--cCHHHHHHHHHHHHHcCCE--EEeCceEEEEEEcCC----------eEEEEEecCC--cceEEEeCEEEEEec
Confidence 0 0156777888888888888 889999988876532 3345544432 123689999999999
Q ss_pred CCCCCCCC
Q 044575 172 HYSYPRLP 179 (454)
Q Consensus 172 ~~~~p~~p 179 (454)
..|+..
T Consensus 277 --~~pn~~ 282 (484)
T TIGR01438 277 --RDACTR 282 (484)
T ss_pred --CCcCCC
Confidence 777764
No 277
>PRK13748 putative mercuric reductase; Provisional
Probab=98.29 E-value=8.3e-06 Score=84.99 Aligned_cols=99 Identities=21% Similarity=0.292 Sum_probs=75.4
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
.++|+|||||+.|+.+|..|++.|.+|+++++..-+ .
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l----~--------------------------------------- 306 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLF----F--------------------------------------- 306 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccc----c---------------------------------------
Confidence 468999999999999999999999999999974210 0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG 171 (454)
. ...++...+.+..++.++. +.++++|.+++..+. .+.+...+ + ++.+|.||+|+|
T Consensus 307 ----~--~d~~~~~~l~~~l~~~gI~--i~~~~~v~~i~~~~~----------~~~v~~~~-~-----~i~~D~vi~a~G 362 (561)
T PRK13748 307 ----R--EDPAIGEAVTAAFRAEGIE--VLEHTQASQVAHVDG----------EFVLTTGH-G-----ELRADKLLVATG 362 (561)
T ss_pred ----c--cCHHHHHHHHHHHHHCCCE--EEcCCEEEEEEecCC----------EEEEEecC-C-----eEEeCEEEEccC
Confidence 0 0146677778888888888 888999999875432 44444332 1 589999999999
Q ss_pred CCCCCCCC
Q 044575 172 HYSYPRLP 179 (454)
Q Consensus 172 ~~~~p~~p 179 (454)
..|+..
T Consensus 363 --~~pn~~ 368 (561)
T PRK13748 363 --RAPNTR 368 (561)
T ss_pred --CCcCCC
Confidence 788765
No 278
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.29 E-value=1.3e-05 Score=78.03 Aligned_cols=63 Identities=27% Similarity=0.355 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCCCC
Q 044575 103 LWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYP 176 (454)
Q Consensus 103 ~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~~p 176 (454)
+.+-+-+++.+. +.. ++++++|++|++..++ .|.|++.+..++...++++++|+|..|.++.|
T Consensus 183 LTr~l~~~l~~~~~~~--~~~~~eV~~i~r~~dg---------~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~ 246 (488)
T PF06039_consen 183 LTRQLVEYLQKQKGFE--LHLNHEVTDIKRNGDG---------RWEVKVKDLKTGEKREVRAKFVFVGAGGGALP 246 (488)
T ss_pred HHHHHHHHHHhCCCcE--EEecCEeCeeEECCCC---------CEEEEEEecCCCCeEEEECCEEEECCchHhHH
Confidence 334444444443 655 9999999999998775 89999988666667789999999999966543
No 279
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.28 E-value=1.1e-05 Score=80.44 Aligned_cols=35 Identities=40% Similarity=0.586 Sum_probs=31.8
Q ss_pred CCCcEEEECcChHHHHHHHHHHHc-CC-cEEEEeeCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKE-GH-RVVVLEQNH 45 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~-g~-~v~vie~~~ 45 (454)
..+||+|||||..|+++|.+|++. |. +|+|+|+..
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 468999999999999999999985 85 999999975
No 280
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.27 E-value=8.1e-06 Score=88.02 Aligned_cols=103 Identities=21% Similarity=0.187 Sum_probs=78.1
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
.++++|||||+.|+.+|..|++.|.+|+|+++.+.+-..
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~----------------------------------------- 183 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAE----------------------------------------- 183 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhh-----------------------------------------
Confidence 468999999999999999999999999999987642000
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG 171 (454)
.-..++...+.+..++.++. +++++.|.+|....... .-.+.+.++. ++.+|.||+|+|
T Consensus 184 ------~ld~~~~~~l~~~L~~~GV~--v~~~~~v~~I~~~~~~~--------~~~v~~~dG~-----~i~~D~Vv~A~G 242 (847)
T PRK14989 184 ------QLDQMGGEQLRRKIESMGVR--VHTSKNTLEIVQEGVEA--------RKTMRFADGS-----ELEVDFIVFSTG 242 (847)
T ss_pred ------hcCHHHHHHHHHHHHHCCCE--EEcCCeEEEEEecCCCc--------eEEEEECCCC-----EEEcCEEEECCC
Confidence 00146667788888888988 99999999997542210 3345555554 789999999999
Q ss_pred CCCCCCC
Q 044575 172 HYSYPRL 178 (454)
Q Consensus 172 ~~~~p~~ 178 (454)
.+|+.
T Consensus 243 --~rPn~ 247 (847)
T PRK14989 243 --IRPQD 247 (847)
T ss_pred --cccCc
Confidence 77775
No 281
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.27 E-value=6.1e-06 Score=85.69 Aligned_cols=33 Identities=30% Similarity=0.487 Sum_probs=30.4
Q ss_pred cEEEECcChHHHHHHHHHH----HcCCcEEEEeeCCC
Q 044575 14 NVCVIGAGPSGLVAARELR----KEGHRVVVLEQNHD 46 (454)
Q Consensus 14 ~VvIIGaG~aGl~aA~~l~----~~g~~v~vie~~~~ 46 (454)
||||||||.||++||..++ +.|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 7999999999999999998 67999999999764
No 282
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.26 E-value=1e-05 Score=74.35 Aligned_cols=151 Identities=23% Similarity=0.238 Sum_probs=86.1
Q ss_pred cEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCC------CCCCC----Ccccc------------------
Q 044575 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDP------NTDQT----EVHSS------------------ 65 (454)
Q Consensus 14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~------~~~~~----~~~~~------------------ 65 (454)
.|||||+|.|||+|+..+...+-.|+++|+...+||.-.... ++... ...++
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~e 90 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVPE 90 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcHH
Confidence 599999999999999999999888999999999998643221 11100 00000
Q ss_pred ccccceecCCccccc--------------cCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh----CCCccEEeCeEEE
Q 044575 66 VYASLRLTSPREIMG--------------YTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRF----GLREMIRFNTRVE 127 (454)
Q Consensus 66 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~----~~~~~i~~~~~V~ 127 (454)
....+..+++...-. ..+...|... +.....|+.-++...|....+++ .-.-.|.++++|+
T Consensus 91 Lm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTH-r~s~plppgfei~~~L~~~l~k~as~~pe~~ki~~nskvv 169 (477)
T KOG2404|consen 91 LMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTH-RSSGPLPPGFEIVKALSTRLKKKASENPELVKILLNSKVV 169 (477)
T ss_pred HHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCCCCccc-ccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhhhcceee
Confidence 011111111111111 1122222211 12233445555555554444433 2122378899999
Q ss_pred EEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCCC
Q 044575 128 YVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSY 175 (454)
Q Consensus 128 ~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~~ 175 (454)
+|.+..+. -.-|...+.. ++...+.++.||+|||.|+.
T Consensus 170 ~il~n~gk---------VsgVeymd~s-gek~~~~~~~VVlatGGf~y 207 (477)
T KOG2404|consen 170 DILRNNGK---------VSGVEYMDAS-GEKSKIIGDAVVLATGGFGY 207 (477)
T ss_pred eeecCCCe---------EEEEEEEcCC-CCccceecCceEEecCCcCc
Confidence 99855432 3445555443 44456789999999998765
No 283
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.26 E-value=7.5e-06 Score=84.04 Aligned_cols=39 Identities=31% Similarity=0.515 Sum_probs=35.6
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccc
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQW 51 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w 51 (454)
..||||||+| +|++||.++++.|.+|+||||.+..||.-
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t 45 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTT 45 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcce
Confidence 5799999999 99999999999999999999998777644
No 284
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.26 E-value=9.5e-06 Score=80.38 Aligned_cols=37 Identities=38% Similarity=0.472 Sum_probs=33.6
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV 47 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~ 47 (454)
.++||+|||||.+|+++|.+|++.|.+|+++|+..-.
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~ 39 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAG 39 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccC
Confidence 3579999999999999999999999999999987643
No 285
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.26 E-value=1.1e-05 Score=74.76 Aligned_cols=158 Identities=20% Similarity=0.321 Sum_probs=95.4
Q ss_pred ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCC--c---------------------------ccccCCCCCC
Q 044575 9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVG--G---------------------------QWLYDPNTDQ 59 (454)
Q Consensus 9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~G--G---------------------------~w~~~~~~~~ 59 (454)
|....+|+|||||.-|+++|.+|++.|.+++++|+-+-+- | .|...+....
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g 83 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESG 83 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhc
Confidence 4456899999999999999999999999999999866421 0 1111111000
Q ss_pred C--------Cccc----cccccceecCCcccc------------ccC-CCCCCCC-CC--CCCCCCCCHHHHHHHHHHHH
Q 044575 60 T--------EVHS----SVYASLRLTSPREIM------------GYT-DFPFVLK-KG--RDVRRFPGHKELWLYLKDFC 111 (454)
Q Consensus 60 ~--------~~~~----~~~~~~~~~~~~~~~------------~~~-~~~~~~~-~~--~~~~~~~~~~~~~~yl~~~~ 111 (454)
. .... ....++..+..+... .|+ .++++.. .+ .....+.....-+.-+++++
T Consensus 84 ~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~ 163 (399)
T KOG2820|consen 84 VKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKA 163 (399)
T ss_pred eeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHH
Confidence 0 0000 000111111111111 122 2333321 00 12334556678888999999
Q ss_pred HHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCCCCCCCC
Q 044575 112 QRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPS 180 (454)
Q Consensus 112 ~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~~p~~p~ 180 (454)
.+.|.. ++.+..|..+...+... ....|.+.++. .+.++++|+++|.+....+|.
T Consensus 164 ~~~G~i--~~dg~~v~~~~~~~e~~-------~~v~V~Tt~gs-----~Y~akkiI~t~GaWi~klL~~ 218 (399)
T KOG2820|consen 164 RELGVI--FRDGEKVKFIKFVDEEG-------NHVSVQTTDGS-----IYHAKKIIFTVGAWINKLLPT 218 (399)
T ss_pred HHcCeE--EecCcceeeEeeccCCC-------ceeEEEeccCC-----eeecceEEEEecHHHHhhcCc
Confidence 999988 89999999888654331 14566676665 689999999999765555553
No 286
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.24 E-value=1e-06 Score=89.15 Aligned_cols=40 Identities=40% Similarity=0.679 Sum_probs=37.4
Q ss_pred CcEEEECcChHHHHHHHHHHHcC--CcEEEEeeCCCCCcccc
Q 044575 13 KNVCVIGAGPSGLVAARELRKEG--HRVVVLEQNHDVGGQWL 52 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g--~~v~vie~~~~~GG~w~ 52 (454)
++|+|||||+|||+||..|++.| ++|+|+|+++++||...
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~ 42 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQ 42 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEE
Confidence 37999999999999999999987 89999999999999865
No 287
>PLN02268 probable polyamine oxidase
Probab=98.24 E-value=1.1e-06 Score=88.57 Aligned_cols=40 Identities=38% Similarity=0.634 Sum_probs=38.0
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL 52 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~ 52 (454)
++|+|||||.|||+||+.|.+.|++|+|+|+++++||...
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~ 40 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVH 40 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceee
Confidence 4799999999999999999999999999999999999875
No 288
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.24 E-value=7.9e-06 Score=87.96 Aligned_cols=102 Identities=22% Similarity=0.167 Sum_probs=76.8
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
.++++|||||+.|+.+|..|++.|.+|+|+++.+.+...
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~----------------------------------------- 178 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK----------------------------------------- 178 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhh-----------------------------------------
Confidence 468999999999999999999999999999986532000
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG 171 (454)
.-..+....+.+..+..++. +++++.|+++..... ...|++.++. ++.+|.||+|+|
T Consensus 179 ------~ld~~~~~~l~~~l~~~GV~--v~~~~~v~~i~~~~~----------~~~v~~~dG~-----~i~~D~Vi~a~G 235 (785)
T TIGR02374 179 ------QLDQTAGRLLQRELEQKGLT--FLLEKDTVEIVGATK----------ADRIRFKDGS-----SLEADLIVMAAG 235 (785)
T ss_pred ------hcCHHHHHHHHHHHHHcCCE--EEeCCceEEEEcCCc----------eEEEEECCCC-----EEEcCEEEECCC
Confidence 00145566677777788888 889999988864321 3346666554 789999999999
Q ss_pred CCCCCCCC
Q 044575 172 HYSYPRLP 179 (454)
Q Consensus 172 ~~~~p~~p 179 (454)
..|+..
T Consensus 236 --~~Pn~~ 241 (785)
T TIGR02374 236 --IRPNDE 241 (785)
T ss_pred --CCcCcH
Confidence 777764
No 289
>PLN02568 polyamine oxidase
Probab=98.23 E-value=1.3e-06 Score=89.63 Aligned_cols=44 Identities=30% Similarity=0.513 Sum_probs=39.6
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcC-----CcEEEEeeCCCCCcccccC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEG-----HRVVVLEQNHDVGGQWLYD 54 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g-----~~v~vie~~~~~GG~w~~~ 54 (454)
+.++|+|||||+|||+||..|.+.| ++|+|+|+++.+||.+...
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~ 52 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTS 52 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEE
Confidence 3479999999999999999999887 8999999999999987643
No 290
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.21 E-value=1.4e-05 Score=80.23 Aligned_cols=94 Identities=33% Similarity=0.361 Sum_probs=71.8
Q ss_pred CcEEEECcChHHHHHHHHHHH--------------cCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccc
Q 044575 13 KNVCVIGAGPSGLVAARELRK--------------EGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREI 78 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~--------------~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (454)
.+|+|||||+.|+..|..|++ .+.+|++|++.+.+.
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll------------------------------ 223 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL------------------------------ 223 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc------------------------------
Confidence 489999999999999999875 368999999876431
Q ss_pred cccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeE
Q 044575 79 MGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKV 158 (454)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 158 (454)
+.+ ..++.+++.+..++.+++ +.++++|.+++.. .|.+.+++
T Consensus 224 ----------------~~~--~~~~~~~~~~~L~~~gV~--v~~~~~v~~v~~~--------------~v~~~~g~---- 265 (424)
T PTZ00318 224 ----------------GSF--DQALRKYGQRRLRRLGVD--IRTKTAVKEVLDK--------------EVVLKDGE---- 265 (424)
T ss_pred ----------------ccC--CHHHHHHHHHHHHHCCCE--EEeCCeEEEEeCC--------------EEEECCCC----
Confidence 001 146777888888888988 8889999988632 25555554
Q ss_pred EEEEeCEEEEccCCCCCCC
Q 044575 159 VEEVFDAVVVATGHYSYPR 177 (454)
Q Consensus 159 ~~~~~d~vViAtG~~~~p~ 177 (454)
++.+|.+|+|+| ..|+
T Consensus 266 -~i~~d~vi~~~G--~~~~ 281 (424)
T PTZ00318 266 -VIPTGLVVWSTG--VGPG 281 (424)
T ss_pred -EEEccEEEEccC--CCCc
Confidence 789999999999 5554
No 291
>PRK10262 thioredoxin reductase; Provisional
Probab=98.21 E-value=1.8e-05 Score=76.27 Aligned_cols=105 Identities=21% Similarity=0.226 Sum_probs=73.6
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
.++|+|||+|..|+.+|..|++.+.+|+++++.+.+.
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~------------------------------------------- 182 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR------------------------------------------- 182 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC-------------------------------------------
Confidence 5789999999999999999999999999999865320
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecC-CCeEEEEEeCEEEEcc
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKK-ADKVVEEVFDAVVVAT 170 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~d~vViAt 170 (454)
....+.+.+.+..+..++. +.+++.|.+|+..+.. .-.|++.++. .+...++.+|.||+|+
T Consensus 183 -------~~~~~~~~~~~~l~~~gV~--i~~~~~v~~v~~~~~~---------~~~v~~~~~~~~~~~~~i~~D~vv~a~ 244 (321)
T PRK10262 183 -------AEKILIKRLMDKVENGNII--LHTNRTLEEVTGDQMG---------VTGVRLRDTQNSDNIESLDVAGLFVAI 244 (321)
T ss_pred -------CCHHHHHHHHhhccCCCeE--EEeCCEEEEEEcCCcc---------EEEEEEEEcCCCCeEEEEECCEEEEEe
Confidence 0023344455555555666 7889999998754321 2235554432 1234578999999999
Q ss_pred CCCCCCCCC
Q 044575 171 GHYSYPRLP 179 (454)
Q Consensus 171 G~~~~p~~p 179 (454)
| ..|+..
T Consensus 245 G--~~p~~~ 251 (321)
T PRK10262 245 G--HSPNTA 251 (321)
T ss_pred C--CccChh
Confidence 9 777654
No 292
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.21 E-value=8.8e-06 Score=81.90 Aligned_cols=145 Identities=23% Similarity=0.227 Sum_probs=78.8
Q ss_pred EECcChHHHHHHHHHHHcCCcEEEEeeCCC--CCcccccCCC------CCCCCcc---c--cccccce------------
Q 044575 17 VIGAGPSGLVAARELRKEGHRVVVLEQNHD--VGGQWLYDPN------TDQTEVH---S--SVYASLR------------ 71 (454)
Q Consensus 17 IIGaG~aGl~aA~~l~~~g~~v~vie~~~~--~GG~w~~~~~------~~~~~~~---~--~~~~~~~------------ 71 (454)
|||+|.+|++||.++++.|.+|+|+||.+. .||.-..... ....... + ..+..+.
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~ 80 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRARRGGNARHGRNIRVAHDIPTDFQRDSYPAEEFERDLAPVTGGRTNESLS 80 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCcCcccccchhhcccchhhhhhhhccHHHHHHHHHHhhCCCCCHHHH
Confidence 799999999999999999999999999874 4554222111 0000000 0 0000000
Q ss_pred ----ecCCcccccc--CCCCCCCCC-CC----CCCCCC--CHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccc
Q 044575 72 ----LTSPREIMGY--TDFPFVLKK-GR----DVRRFP--GHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELI 138 (454)
Q Consensus 72 ----~~~~~~~~~~--~~~~~~~~~-~~----~~~~~~--~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~ 138 (454)
.+.+..+-.+ .+.++.... +. ....|+ ....+.+.|.+.+++.++. ++++++|+++...++.
T Consensus 81 ~~~~~~s~~~i~wl~~~Gv~f~~~~~g~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~--i~~~~~v~~l~~~~~~--- 155 (432)
T TIGR02485 81 RLGIGRGSRDLRWAFAHGVHLQPPAAGNLPYSRRTAFLRGGGKALTNALYSSAERLGVE--IRYGIAVDRIPPEAFD--- 155 (432)
T ss_pred HHHHhcchhHHHHHHhCCceeeecCCCCccccCceeeecCCHHHHHHHHHHHHHHcCCE--EEeCCEEEEEEecCCC---
Confidence 0001100000 112221100 00 011122 3567788888888888887 9999999998765312
Q ss_pred cCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575 139 IGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS 174 (454)
Q Consensus 139 ~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~ 174 (454)
.+.+-+.... + ...+.++.||+|||.++
T Consensus 156 ------g~v~gv~~~~-~-~~~i~ak~VIlAtGG~~ 183 (432)
T TIGR02485 156 ------GAHDGPLTTV-G-THRITTQALVLAAGGLG 183 (432)
T ss_pred ------CeEEEEEEcC-C-cEEEEcCEEEEcCCCcc
Confidence 3333222111 1 13678999999999543
No 293
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.20 E-value=1.8e-06 Score=83.57 Aligned_cols=44 Identities=34% Similarity=0.597 Sum_probs=39.5
Q ss_pred cCCCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCCCCCccccc
Q 044575 10 AQSKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNHDVGGQWLY 53 (454)
Q Consensus 10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~~~GG~w~~ 53 (454)
....+|||||||.|||+||.+|.+.|+ +++|+|..+++||..+.
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~t 63 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHT 63 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEee
Confidence 346789999999999999999998875 89999999999998764
No 294
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.19 E-value=1.9e-06 Score=84.95 Aligned_cols=39 Identities=38% Similarity=0.645 Sum_probs=37.2
Q ss_pred cEEEECcChHHHHHHHHHHHcC--CcEEEEeeCCCCCcccc
Q 044575 14 NVCVIGAGPSGLVAARELRKEG--HRVVVLEQNHDVGGQWL 52 (454)
Q Consensus 14 ~VvIIGaG~aGl~aA~~l~~~g--~~v~vie~~~~~GG~w~ 52 (454)
+|+|||||.+||+||..|.+.+ .+++|||+.+++||...
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~ 42 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLR 42 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEE
Confidence 6999999999999999999998 89999999999999876
No 295
>PRK07233 hypothetical protein; Provisional
Probab=98.18 E-value=1.8e-06 Score=86.93 Aligned_cols=39 Identities=38% Similarity=0.694 Sum_probs=37.2
Q ss_pred cEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL 52 (454)
Q Consensus 14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~ 52 (454)
+|+|||||++||+||..|.+.|++|+|+|+++.+||.+.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~ 39 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAA 39 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCcee
Confidence 599999999999999999999999999999999999865
No 296
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.16 E-value=2.3e-06 Score=83.42 Aligned_cols=40 Identities=35% Similarity=0.594 Sum_probs=37.6
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL 52 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~ 52 (454)
+||+|||||++|+++|..|++.|.+|+|+|+++.+||.+.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~ 41 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCY 41 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCcee
Confidence 5899999999999999999999999999999999999654
No 297
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.16 E-value=1.9e-05 Score=81.18 Aligned_cols=101 Identities=23% Similarity=0.229 Sum_probs=71.3
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
.++|+|||||+.|+.+|..|++.+.+|+++++.+.+.
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~------------------------------------------- 388 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK------------------------------------------- 388 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC-------------------------------------------
Confidence 4799999999999999999999999999999865320
Q ss_pred CCCCCCCCHHHHHHHHHHHHHH-hCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575 92 RDVRRFPGHKELWLYLKDFCQR-FGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT 170 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt 170 (454)
. . ..+.+..+. .++. +++++.|.++...++. ...|++.++.++...++.+|.|++|+
T Consensus 389 -------~-~---~~l~~~l~~~~gV~--i~~~~~v~~i~~~~~~---------v~~v~~~~~~~~~~~~i~~D~vi~a~ 446 (515)
T TIGR03140 389 -------A-D---KVLQDKLKSLPNVD--ILTSAQTTEIVGDGDK---------VTGIRYQDRNSGEEKQLDLDGVFVQI 446 (515)
T ss_pred -------h-h---HHHHHHHhcCCCCE--EEECCeeEEEEcCCCE---------EEEEEEEECCCCcEEEEEcCEEEEEe
Confidence 0 0 122333333 4666 8889999988754221 22355555433444578999999999
Q ss_pred CCCCCCCCC
Q 044575 171 GHYSYPRLP 179 (454)
Q Consensus 171 G~~~~p~~p 179 (454)
| ..|+..
T Consensus 447 G--~~Pn~~ 453 (515)
T TIGR03140 447 G--LVPNTE 453 (515)
T ss_pred C--CcCCch
Confidence 9 777764
No 298
>PLN02576 protoporphyrinogen oxidase
Probab=98.16 E-value=2.3e-06 Score=87.76 Aligned_cols=42 Identities=48% Similarity=0.657 Sum_probs=39.3
Q ss_pred CCCcEEEECcChHHHHHHHHHHHc-CCcEEEEeeCCCCCcccc
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKE-GHRVVVLEQNHDVGGQWL 52 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~-g~~v~vie~~~~~GG~w~ 52 (454)
..+||+|||||++||+||..|.+. |.+|+|+|+++.+||...
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~ 53 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNIT 53 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCcee
Confidence 457999999999999999999999 999999999999999865
No 299
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.15 E-value=2.2e-06 Score=87.10 Aligned_cols=40 Identities=43% Similarity=0.597 Sum_probs=38.1
Q ss_pred CcEEEECcChHHHHHHHHHHHc----CCcEEEEeeCCCCCcccc
Q 044575 13 KNVCVIGAGPSGLVAARELRKE----GHRVVVLEQNHDVGGQWL 52 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~----g~~v~vie~~~~~GG~w~ 52 (454)
+||+|||||++||+||..|.+. |++|+|+|+++++||...
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~ 46 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQ 46 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEE
Confidence 6899999999999999999998 999999999999999876
No 300
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.14 E-value=2.5e-06 Score=87.34 Aligned_cols=41 Identities=49% Similarity=0.569 Sum_probs=38.5
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccccc
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLY 53 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~ 53 (454)
+||+|||||++||+||..|++.|++|+|+|+++.+||....
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t 42 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGT 42 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccce
Confidence 68999999999999999999999999999999999997653
No 301
>PTZ00367 squalene epoxidase; Provisional
Probab=98.14 E-value=2.1e-05 Score=81.10 Aligned_cols=35 Identities=31% Similarity=0.570 Sum_probs=32.7
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH 45 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~ 45 (454)
..+||+|||||++|+++|..|++.|++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 35799999999999999999999999999999975
No 302
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=2.4e-06 Score=84.07 Aligned_cols=41 Identities=37% Similarity=0.526 Sum_probs=38.2
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccccc
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLY 53 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~ 53 (454)
++|+|+|||.|||+||+.|++.|++|+|+|+++.+||.+..
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s 41 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVAS 41 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeee
Confidence 47999999999999999999999999999999999997543
No 303
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.13 E-value=3.2e-05 Score=74.73 Aligned_cols=57 Identities=30% Similarity=0.356 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCC
Q 044575 101 KELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHY 173 (454)
Q Consensus 101 ~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~ 173 (454)
.++..-+.++.+.++.+ ++|+++|.+|+..+.. ...|.+.++. ++.+|+||+|.|+.
T Consensus 173 ~~vvkni~~~l~~~G~e--i~f~t~VeDi~~~~~~---------~~~v~~~~g~-----~i~~~~vvlA~Grs 229 (486)
T COG2509 173 PKVVKNIREYLESLGGE--IRFNTEVEDIEIEDNE---------VLGVKLTKGE-----EIEADYVVLAPGRS 229 (486)
T ss_pred HHHHHHHHHHHHhcCcE--EEeeeEEEEEEecCCc---------eEEEEccCCc-----EEecCEEEEccCcc
Confidence 46778888888989988 9999999999987643 3567777665 89999999999974
No 304
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.12 E-value=1.5e-05 Score=87.27 Aligned_cols=35 Identities=37% Similarity=0.556 Sum_probs=32.8
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD 46 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~ 46 (454)
.+||+|||||.||++||..+++.|.+|+|+||...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 57999999999999999999999999999999764
No 305
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.11 E-value=1e-05 Score=78.28 Aligned_cols=137 Identities=21% Similarity=0.182 Sum_probs=68.1
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCC--cEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGH--RVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVL 88 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~--~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (454)
..++|+|||||-++...+..|.+.+. +|+++-|+..+- +.-.++. ......|..+-.|...|...
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~------~~d~s~f-------~ne~f~P~~v~~f~~l~~~~ 255 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFF------PMDDSPF-------VNEIFSPEYVDYFYSLPDEE 255 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-E------B----CC-------HHGGGSHHHHHHHHTS-HHH
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccC------CCccccc-------hhhhcCchhhhhhhcCCHHH
Confidence 46899999999999999999999864 899999876320 0000000 00011111111111111100
Q ss_pred CC----CCC--CCCCCCHHHHHH-----HHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCe
Q 044575 89 KK----GRD--VRRFPGHKELWL-----YLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADK 157 (454)
Q Consensus 89 ~~----~~~--~~~~~~~~~~~~-----yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 157 (454)
+. ... ...-.+.+-+.+ |-+++..+..+. +..+++|++++..+++ +|.+++.+..++.
T Consensus 256 R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~--l~~~~~v~~~~~~~~~---------~~~l~~~~~~~~~ 324 (341)
T PF13434_consen 256 RRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLR--LLPNTEVTSAEQDGDG---------GVRLTLRHRQTGE 324 (341)
T ss_dssp HHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SE--EETTEEEEEEEEES-S---------SEEEEEEETTT--
T ss_pred HHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeE--EeCCCEEEEEEECCCC---------EEEEEEEECCCCC
Confidence 00 000 000011222211 222222222233 7779999999988744 8999999877677
Q ss_pred EEEEEeCEEEEccC
Q 044575 158 VVEEVFDAVVVATG 171 (454)
Q Consensus 158 ~~~~~~d~vViAtG 171 (454)
..++.+|+||+|||
T Consensus 325 ~~~~~~D~VilATG 338 (341)
T PF13434_consen 325 EETLEVDAVILATG 338 (341)
T ss_dssp EEEEEESEEEE---
T ss_pred eEEEecCEEEEcCC
Confidence 78899999999999
No 306
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.10 E-value=1.5e-05 Score=78.57 Aligned_cols=36 Identities=33% Similarity=0.398 Sum_probs=33.0
Q ss_pred cEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCc
Q 044575 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGG 49 (454)
Q Consensus 14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG 49 (454)
+|+|||||.+|+.+|..|++.|++|+|||+++..+-
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT 37 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence 799999999999999999999999999998776543
No 307
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.10 E-value=1.2e-05 Score=79.14 Aligned_cols=45 Identities=31% Similarity=0.477 Sum_probs=36.5
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDP 55 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~ 55 (454)
..+||+|||||.||+.||.+.++.|.+++++--+-+.=|.+..++
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNP 47 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNP 47 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeeccccc
Confidence 458999999999999999999999999999887665444444333
No 308
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.10 E-value=1.4e-05 Score=76.24 Aligned_cols=36 Identities=39% Similarity=0.610 Sum_probs=33.4
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV 47 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~ 47 (454)
..+|+|||||.+|+++|..|.++|++|+|+|++..+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 368999999999999999999999999999998765
No 309
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.09 E-value=3.8e-05 Score=73.11 Aligned_cols=99 Identities=23% Similarity=0.259 Sum_probs=68.0
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
.++|+|||+|++|+.+|..|++.+.+|+++++.+.+.
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~------------------------------------------- 177 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR------------------------------------------- 177 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC-------------------------------------------
Confidence 4689999999999999999999999999999865220
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHh-CCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRF-GLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT 170 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt 170 (454)
.... +.+.+++. ++. +.+++++.+++..+ . .-.+++.+...+...++.+|.||+|+
T Consensus 178 -------~~~~----~~~~l~~~~gv~--~~~~~~v~~i~~~~-~---------~~~v~~~~~~~g~~~~i~~D~vi~a~ 234 (300)
T TIGR01292 178 -------AEKI----LLDRLRKNPNIE--FLWNSTVKEIVGDN-K---------VEGVKIKNTVTGEEEELKVDGVFIAI 234 (300)
T ss_pred -------cCHH----HHHHHHhCCCeE--EEeccEEEEEEccC-c---------EEEEEEEecCCCceEEEEccEEEEee
Confidence 0012 22233333 666 77889999987542 1 22344433222334578999999999
Q ss_pred CCCCCCCC
Q 044575 171 GHYSYPRL 178 (454)
Q Consensus 171 G~~~~p~~ 178 (454)
| ..|+.
T Consensus 235 G--~~~~~ 240 (300)
T TIGR01292 235 G--HEPNT 240 (300)
T ss_pred C--CCCCh
Confidence 9 66665
No 310
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.09 E-value=4.8e-05 Score=78.06 Aligned_cols=39 Identities=33% Similarity=0.438 Sum_probs=35.4
Q ss_pred cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCC
Q 044575 10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVG 48 (454)
Q Consensus 10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~G 48 (454)
...+||+|||||.||+.||..+++.|.+|+|+||....+
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r 42 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR 42 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence 345899999999999999999999999999999987654
No 311
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.08 E-value=3.1e-06 Score=86.99 Aligned_cols=39 Identities=41% Similarity=0.480 Sum_probs=36.9
Q ss_pred EEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccccc
Q 044575 15 VCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLY 53 (454)
Q Consensus 15 VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~ 53 (454)
|+|||||.+||+||..|++.|++|+|+|+++.+||....
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t 39 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGV 39 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEE
Confidence 689999999999999999999999999999999998763
No 312
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.07 E-value=3.5e-05 Score=74.89 Aligned_cols=107 Identities=23% Similarity=0.239 Sum_probs=85.6
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
...|+++|+|+.|+.+|..|...+.+|++|++.+.+ ++
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~--------------------------------------~~---- 250 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWL--------------------------------------LP---- 250 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccc--------------------------------------hh----
Confidence 567999999999999999999999999999997632 00
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccC
Q 044575 92 RDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATG 171 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG 171 (454)
. .-...+.+.+..|.++.++. +..++.+.+++..+++. .-.|.+.++. ++.+|-||+++|
T Consensus 251 ---~--lf~~~i~~~~~~y~e~kgVk--~~~~t~~s~l~~~~~Ge--------v~~V~l~dg~-----~l~adlvv~GiG 310 (478)
T KOG1336|consen 251 ---R--LFGPSIGQFYEDYYENKGVK--FYLGTVVSSLEGNSDGE--------VSEVKLKDGK-----TLEADLVVVGIG 310 (478)
T ss_pred ---h--hhhHHHHHHHHHHHHhcCeE--EEEecceeecccCCCCc--------EEEEEeccCC-----EeccCeEEEeec
Confidence 0 12256777788888888888 88999999988776442 4567777766 899999999999
Q ss_pred CCCCCCCCCCC
Q 044575 172 HYSYPRLPSIK 182 (454)
Q Consensus 172 ~~~~p~~p~i~ 182 (454)
.+|+.+.+.
T Consensus 311 --~~p~t~~~~ 319 (478)
T KOG1336|consen 311 --IKPNTSFLE 319 (478)
T ss_pred --ccccccccc
Confidence 899988655
No 313
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.06 E-value=1.1e-05 Score=79.32 Aligned_cols=89 Identities=12% Similarity=0.103 Sum_probs=64.0
Q ss_pred eEEEEcCCCCHHHHHHHHhhh---cCeEEEecccCCc--Cccc-----------------hhhhccC-CCeEEcCceeEE
Q 044575 207 VVVVVGNSLSGQDISMELVEV---AKEVHLSAKSLNI--SEGL-----------------SKVISKH-NNLHLHPQIDCL 263 (454)
Q Consensus 207 ~vvVVG~G~sg~e~A~~l~~~---~~~V~l~~r~~~~--~~~~-----------------~~~l~~~-~~i~~~~~v~~v 263 (454)
+|||||||..|+.+|..+.+. ..+|+++++++.. .+.+ .+.+.+. .+++ ...++.+
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~-~~~v~~i 79 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFV-IAEATGI 79 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEE-EEEEEEE
Confidence 589999999999999999643 5789999987754 1111 1112222 2343 3567888
Q ss_pred ecCC-cEEEeCCCEEeeceEEEccCcccCCcCCC
Q 044575 264 REDG-RVTFVDGCWVTADTILYCTGYSYSFPFLD 296 (454)
Q Consensus 264 ~~~~-~v~~~dG~~i~~D~vI~atG~~~~~~~l~ 296 (454)
+.++ .|.+.+|+++++|.+|+|||..+..+-+.
T Consensus 80 d~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~i~ 113 (364)
T TIGR03169 80 DPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVE 113 (364)
T ss_pred ecccCEEEECCCCcccccEEEEccCCCCCCCCCC
Confidence 7543 68888998999999999999998876544
No 314
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.05 E-value=4.8e-06 Score=85.28 Aligned_cols=41 Identities=41% Similarity=0.574 Sum_probs=38.6
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccccc
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLY 53 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~ 53 (454)
+||+|||||.+||++|..|++.|++|+|+||++.+||....
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~ 41 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGY 41 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeE
Confidence 58999999999999999999999999999999999998764
No 315
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.05 E-value=1.2e-05 Score=76.75 Aligned_cols=84 Identities=15% Similarity=0.275 Sum_probs=65.0
Q ss_pred CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCcc----------------chhhh---------------------
Q 044575 206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEG----------------LSKVI--------------------- 248 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~----------------~~~~l--------------------- 248 (454)
..|+|||+|++|+-.|..+++.|.+|.++++.+.+... ..+.+
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~d 83 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPED 83 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHHH
Confidence 47999999999999999999999999999998876100 00000
Q ss_pred ---------------------------------------ccCCCeEEcCceeEEecCC---cEEEeCCCEEeeceEEEcc
Q 044575 249 ---------------------------------------SKHNNLHLHPQIDCLREDG---RVTFVDGCWVTADTILYCT 286 (454)
Q Consensus 249 ---------------------------------------~~~~~i~~~~~v~~v~~~~---~v~~~dG~~i~~D~vI~at 286 (454)
...+.+++++.|.++..++ .+.+.+|+++.||.+|+||
T Consensus 84 ~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAt 163 (408)
T COG2081 84 FIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILAT 163 (408)
T ss_pred HHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEec
Confidence 1123578889999998663 5677788899999999999
Q ss_pred Ccc
Q 044575 287 GYS 289 (454)
Q Consensus 287 G~~ 289 (454)
|-.
T Consensus 164 GG~ 166 (408)
T COG2081 164 GGK 166 (408)
T ss_pred CCc
Confidence 955
No 316
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.05 E-value=4.5e-06 Score=84.86 Aligned_cols=40 Identities=33% Similarity=0.492 Sum_probs=36.5
Q ss_pred CcEEEECcChHHHHHHHHHHHc------CCcEEEEeeCCCCCcccc
Q 044575 13 KNVCVIGAGPSGLVAARELRKE------GHRVVVLEQNHDVGGQWL 52 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~------g~~v~vie~~~~~GG~w~ 52 (454)
++|+|||||+|||+||..|.+. |.+|+|+|+++++||...
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~ 47 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIH 47 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEE
Confidence 5799999999999999999986 379999999999999865
No 317
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.04 E-value=5e-05 Score=78.16 Aligned_cols=101 Identities=25% Similarity=0.213 Sum_probs=70.8
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKG 91 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (454)
.++|+|||||+.|+.+|..|+..+.+|+++++.+.+.
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~------------------------------------------- 387 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK------------------------------------------- 387 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc-------------------------------------------
Confidence 4789999999999999999999999999999875320
Q ss_pred CCCCCCCCHHHHHHHHHHHHHH-hCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575 92 RDVRRFPGHKELWLYLKDFCQR-FGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT 170 (454)
Q Consensus 92 ~~~~~~~~~~~~~~yl~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt 170 (454)
. . .++.+.... .++. +++++.|.++...++. .-.+++.+..++...++.+|.|++|+
T Consensus 388 -------~-~---~~l~~~l~~~~gI~--i~~~~~v~~i~~~~g~---------v~~v~~~~~~~g~~~~i~~D~v~~~~ 445 (517)
T PRK15317 388 -------A-D---QVLQDKLRSLPNVT--IITNAQTTEVTGDGDK---------VTGLTYKDRTTGEEHHLELEGVFVQI 445 (517)
T ss_pred -------c-c---HHHHHHHhcCCCcE--EEECcEEEEEEcCCCc---------EEEEEEEECCCCcEEEEEcCEEEEeE
Confidence 0 0 122222222 3666 8899999998754221 22355555433445579999999999
Q ss_pred CCCCCCCCC
Q 044575 171 GHYSYPRLP 179 (454)
Q Consensus 171 G~~~~p~~p 179 (454)
| ..|+..
T Consensus 446 G--~~p~~~ 452 (517)
T PRK15317 446 G--LVPNTE 452 (517)
T ss_pred C--CccCch
Confidence 9 677654
No 318
>PLN02676 polyamine oxidase
Probab=98.02 E-value=6.5e-06 Score=83.74 Aligned_cols=44 Identities=34% Similarity=0.601 Sum_probs=40.0
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCCCCCcccccC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNHDVGGQWLYD 54 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~~~GG~w~~~ 54 (454)
..+||+|||||++||+||.+|++.|. +|+|+|+++.+||.+...
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~ 69 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKA 69 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceee
Confidence 35799999999999999999999998 699999999999987653
No 319
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.00 E-value=6.5e-06 Score=83.45 Aligned_cols=39 Identities=38% Similarity=0.618 Sum_probs=37.0
Q ss_pred cEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL 52 (454)
Q Consensus 14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~ 52 (454)
+|+|||||++||+||..|.+.|++|+|+|+++.+||.+.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~ 39 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVA 39 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcc
Confidence 589999999999999999999999999999999999765
No 320
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.00 E-value=6.1e-06 Score=82.36 Aligned_cols=44 Identities=23% Similarity=0.361 Sum_probs=41.2
Q ss_pred ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575 9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL 52 (454)
Q Consensus 9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~ 52 (454)
|++.+||+|||+|.+|+.+|..|++.|.+|+++|+++..||.|.
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~a 44 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESA 44 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccc
Confidence 34569999999999999999999999999999999999999987
No 321
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.00 E-value=8.6e-06 Score=78.86 Aligned_cols=42 Identities=45% Similarity=0.725 Sum_probs=39.5
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL 52 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~ 52 (454)
...||+|||||.+||++|..|.+.|++|+|+|.++++||.+.
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~ 47 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSL 47 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeE
Confidence 458999999999999999999999999999999999999765
No 322
>PLN02529 lysine-specific histone demethylase 1
Probab=97.96 E-value=9.3e-06 Score=85.45 Aligned_cols=43 Identities=42% Similarity=0.608 Sum_probs=39.4
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccccc
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLY 53 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~ 53 (454)
..++|+|||||++|++||+.|++.|++|+|+|+++.+||....
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t 201 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYT 201 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceee
Confidence 4689999999999999999999999999999999999987543
No 323
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.91 E-value=1.8e-05 Score=70.74 Aligned_cols=87 Identities=21% Similarity=0.378 Sum_probs=51.6
Q ss_pred EEEcCCCCHHHHHHHHhhhcCe-EEEecccCCcC--------------ccc-------hhh-------------------
Q 044575 209 VVVGNSLSGQDISMELVEVAKE-VHLSAKSLNIS--------------EGL-------SKV------------------- 247 (454)
Q Consensus 209 vVVG~G~sg~e~A~~l~~~~~~-V~l~~r~~~~~--------------~~~-------~~~------------------- 247 (454)
+|||+|++|+-+|..|.+.|.+ |++++|.+.+. +.+ .+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 6999999999999999999998 99999986651 000 000
Q ss_pred -------h----ccC-CCeEEcCceeEEecCC---cEEEeCCCEEeeceEEEccCc--ccCCcCC
Q 044575 248 -------I----SKH-NNLHLHPQIDCLREDG---RVTFVDGCWVTADTILYCTGY--SYSFPFL 295 (454)
Q Consensus 248 -------l----~~~-~~i~~~~~v~~v~~~~---~v~~~dG~~i~~D~vI~atG~--~~~~~~l 295 (454)
+ .++ .++..++.|+++..++ .|++.+++++.+|.||+|||. .|..|-+
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~ 145 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDI 145 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCcccc
Confidence 0 000 1366778888887444 578888888899999999997 4554433
No 324
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.85 E-value=3.8e-05 Score=74.54 Aligned_cols=82 Identities=24% Similarity=0.365 Sum_probs=54.0
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCeEEEe-cccCCcC-----cc-------------------------------------
Q 044575 207 VVVVVGNSLSGQDISMELVEVAKEVHLS-AKSLNIS-----EG------------------------------------- 243 (454)
Q Consensus 207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~-~r~~~~~-----~~------------------------------------- 243 (454)
.|+|||||..|+|.|..+++.|.+|.|+ .+.+.+. +.
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 4899999999999999999999999999 3444330 00
Q ss_pred --------------------chhhhccCCCe-EEcCceeEEec-CC---cEEEeCCCEEeeceEEEccCc
Q 044575 244 --------------------LSKVISKHNNL-HLHPQIDCLRE-DG---RVTFVDGCWVTADTILYCTGY 288 (454)
Q Consensus 244 --------------------~~~~l~~~~~i-~~~~~v~~v~~-~~---~v~~~dG~~i~~D~vI~atG~ 288 (454)
+.+.+.++.++ +....|+++.. ++ .|.+.+|+++.+|.||.|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 01111222222 23566777753 33 578889999999999999998
No 325
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.84 E-value=1.8e-05 Score=80.33 Aligned_cols=39 Identities=38% Similarity=0.589 Sum_probs=36.8
Q ss_pred cEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL 52 (454)
Q Consensus 14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~ 52 (454)
+|+|||||.+|+++|..|.+.|++|+|+|+++.+||...
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~ 39 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVG 39 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceee
Confidence 589999999999999999999999999999999999754
No 326
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.83 E-value=1e-05 Score=72.14 Aligned_cols=88 Identities=22% Similarity=0.332 Sum_probs=60.3
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc------------------Cccch-----hhh----ccCCCeEEcCc
Q 044575 207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI------------------SEGLS-----KVI----SKHNNLHLHPQ 259 (454)
Q Consensus 207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~------------------~~~~~-----~~l----~~~~~i~~~~~ 259 (454)
+|+|||||+.|+.+|..|++.+.+|+++.+.+.. ...+. +.. ....++.....
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 80 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK 80 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence 5899999999999999999999999999776642 00000 111 12235556677
Q ss_pred eeEEecCCc------EEE-----eCCCEEeeceEEEccCcccCCcC
Q 044575 260 IDCLREDGR------VTF-----VDGCWVTADTILYCTGYSYSFPF 294 (454)
Q Consensus 260 v~~v~~~~~------v~~-----~dG~~i~~D~vI~atG~~~~~~~ 294 (454)
+.++..... +.. .++.++.+|.+|+|||..|..+.
T Consensus 81 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ 126 (201)
T PF07992_consen 81 VVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPN 126 (201)
T ss_dssp EEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEES
T ss_pred cccccccccccccCcccceeeccCCceEecCCeeeecCccccceee
Confidence 777764432 121 23456889999999999876543
No 327
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.82 E-value=2.2e-05 Score=83.11 Aligned_cols=42 Identities=50% Similarity=0.701 Sum_probs=38.8
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL 52 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~ 52 (454)
..++|+|||||++|++||+.|.+.|++|+|+|+++.+||...
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~ 278 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVK 278 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCccc
Confidence 358899999999999999999999999999999999998754
No 328
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.82 E-value=4.7e-05 Score=74.05 Aligned_cols=126 Identities=18% Similarity=0.127 Sum_probs=74.7
Q ss_pred CCcEEEEeeCCCCC--------cccccCCCCCCC-Cc------cccccccceecCCcccccc-CCCCCCCCCCCCCCCCC
Q 044575 35 GHRVVVLEQNHDVG--------GQWLYDPNTDQT-EV------HSSVYASLRLTSPREIMGY-TDFPFVLKKGRDVRRFP 98 (454)
Q Consensus 35 g~~v~vie~~~~~G--------G~w~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 98 (454)
|.+|+|+|+++.+| |.|+.++..+.. .. ...++..+..-.+...+.| .....+.....+...||
T Consensus 1 g~~V~ilEkn~~~GkKil~TG~GRCN~TN~~~~~~~~~~~~~~~~fl~~al~~f~~~d~~~fF~~~Gi~~~~e~~grvfP 80 (376)
T TIGR03862 1 GLEVDVFEAKPSVGRKFLMAGKSGLNLTHSEPLPRFIERYGDAAEWLAPWLEAFDAVALQDWARGLGIETFVGSSGRVFP 80 (376)
T ss_pred CCeEEEEeCCCCccceeEEcCCCCcccCCCCchHHHHHhcCCchHHHHHHHHhCCHHHHHHHHHHCCCceEECCCCEECC
Confidence 46899999999987 567666532210 00 0001111111122222222 12222111122345565
Q ss_pred ---CHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCCC
Q 044575 99 ---GHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSY 175 (454)
Q Consensus 99 ---~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~~ 175 (454)
...++.+-|...+++.++. ++++++|.+|+. + .|.+.+..+. ..+.+|+||||||..+.
T Consensus 81 ~S~~A~sVv~~L~~~l~~~gV~--i~~~~~V~~i~~---~---------~~~v~~~~~~----~~~~a~~vIlAtGG~s~ 142 (376)
T TIGR03862 81 VEMKAAPLLRAWLKRLAEQGVQ--FHTRHRWIGWQG---G---------TLRFETPDGQ----STIEADAVVLALGGASW 142 (376)
T ss_pred CCCCHHHHHHHHHHHHHHCCCE--EEeCCEEEEEeC---C---------cEEEEECCCc----eEEecCEEEEcCCCccc
Confidence 5678999999999999998 999999999921 1 6777764321 15899999999997555
Q ss_pred CCC
Q 044575 176 PRL 178 (454)
Q Consensus 176 p~~ 178 (454)
|..
T Consensus 143 p~~ 145 (376)
T TIGR03862 143 SQL 145 (376)
T ss_pred ccc
Confidence 543
No 329
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.82 E-value=8.6e-05 Score=70.04 Aligned_cols=34 Identities=38% Similarity=0.642 Sum_probs=31.9
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQN 44 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~ 44 (454)
...||+|||||.+|-+.|..|.+.|.+|.||||.
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 3589999999999999999999999999999985
No 330
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.79 E-value=0.00015 Score=70.82 Aligned_cols=34 Identities=32% Similarity=0.340 Sum_probs=30.6
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCc-EEEEeeCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHR-VVVLEQNH 45 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~-v~vie~~~ 45 (454)
.++|+|||+|+.|+.+|..|.+.|.+ |+|+++.+
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 36899999999999999999999987 99999854
No 331
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.78 E-value=2.1e-05 Score=73.20 Aligned_cols=40 Identities=38% Similarity=0.613 Sum_probs=36.4
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL 52 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~ 52 (454)
..+|+|||+|.+||+||..|.+. ++|++||...++||.-+
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~ 47 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHAN 47 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccc
Confidence 46899999999999999999876 79999999999999865
No 332
>PLN02487 zeta-carotene desaturase
Probab=97.77 E-value=2.9e-05 Score=79.88 Aligned_cols=41 Identities=37% Similarity=0.546 Sum_probs=38.3
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL 52 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~ 52 (454)
.++|+|||||++|+++|..|.+.|++|+|+|+++.+||.+.
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~ 115 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVG 115 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCcee
Confidence 35999999999999999999999999999999999999764
No 333
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.76 E-value=0.00038 Score=70.31 Aligned_cols=34 Identities=32% Similarity=0.432 Sum_probs=31.8
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH 45 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~ 45 (454)
.++|+|||||..|+-+|..|++.|.+|+++++++
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 4789999999999999999999999999999864
No 334
>PRK06847 hypothetical protein; Provisional
Probab=97.73 E-value=8.8e-05 Score=73.17 Aligned_cols=35 Identities=20% Similarity=0.312 Sum_probs=32.2
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575 205 NEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN 239 (454)
Q Consensus 205 ~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~ 239 (454)
.++|+|||+|++|+-+|..|++.|.+|+++++.+.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 36899999999999999999999999999998764
No 335
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.70 E-value=0.00049 Score=69.77 Aligned_cols=35 Identities=31% Similarity=0.480 Sum_probs=31.6
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH 45 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~ 45 (454)
..++|+|||+|..|+-+|..|.+.|. +|+++++++
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 35789999999999999999999998 899999864
No 336
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.70 E-value=5.8e-05 Score=77.07 Aligned_cols=34 Identities=38% Similarity=0.529 Sum_probs=31.3
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH 45 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~ 45 (454)
.++|+|||+|.+|+++|..|++.|++|+++|+++
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999999999999999754
No 337
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.69 E-value=4.7e-05 Score=75.29 Aligned_cols=34 Identities=15% Similarity=0.288 Sum_probs=27.3
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575 207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI 240 (454)
Q Consensus 207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~ 240 (454)
+|+|||||++|+=+|..+++.|.+|.+++|.+..
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~ 35 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRV 35 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCccc
Confidence 5899999999999999999999999999999876
No 338
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.69 E-value=0.00032 Score=72.79 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=31.8
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH 45 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~ 45 (454)
.++|+|||||+.|+.+|..|++.|.+|+++++.+
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 4789999999999999999999999999999865
No 339
>PRK12831 putative oxidoreductase; Provisional
Probab=97.69 E-value=0.00058 Score=69.23 Aligned_cols=35 Identities=29% Similarity=0.409 Sum_probs=32.1
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH 45 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~ 45 (454)
..++|+|||||..|+-+|..|.+.|.+|+++.+++
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 35799999999999999999999999999999864
No 340
>PLN03000 amine oxidase
Probab=97.68 E-value=5.1e-05 Score=80.58 Aligned_cols=44 Identities=41% Similarity=0.618 Sum_probs=40.2
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYD 54 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~ 54 (454)
..++|+|||||++|+++|..|.+.|++|+|+|+++++||.+...
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~ 226 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTK 226 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCccee
Confidence 35899999999999999999999999999999999999986543
No 341
>PLN02612 phytoene desaturase
Probab=97.67 E-value=5.4e-05 Score=78.58 Aligned_cols=42 Identities=33% Similarity=0.584 Sum_probs=38.6
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL 52 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~ 52 (454)
..++|+|||||++|++||.+|.+.|++|+|+|+++.+||...
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~ 133 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVA 133 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcce
Confidence 357899999999999999999999999999999999999753
No 342
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.65 E-value=8.1e-05 Score=71.26 Aligned_cols=101 Identities=26% Similarity=0.353 Sum_probs=72.4
Q ss_pred CcEEEECcChHHHHHHHHHHHc--------------CCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccc
Q 044575 13 KNVCVIGAGPSGLVAARELRKE--------------GHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREI 78 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~--------------g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (454)
-.+|||||||.|...|.+|... ..+|+++|+.+++
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i------------------------------- 267 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI------------------------------- 267 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH-------------------------------
Confidence 4799999999999999999642 3689999998754
Q ss_pred cccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeE
Q 044575 79 MGYTDFPFVLKKGRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKV 158 (454)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 158 (454)
.++- .+.+.+|.++...+.++. ++.++.|..|... ...+.+.+ ++.
T Consensus 268 -----L~mF------------dkrl~~yae~~f~~~~I~--~~~~t~Vk~V~~~------------~I~~~~~~---g~~ 313 (491)
T KOG2495|consen 268 -----LNMF------------DKRLVEYAENQFVRDGID--LDTGTMVKKVTEK------------TIHAKTKD---GEI 313 (491)
T ss_pred -----HHHH------------HHHHHHHHHHHhhhccce--eecccEEEeecCc------------EEEEEcCC---Cce
Confidence 1111 156667777777777777 8889999888744 33333332 345
Q ss_pred EEEEeCEEEEccCCCCCCCC
Q 044575 159 VEEVFDAVVVATGHYSYPRL 178 (454)
Q Consensus 159 ~~~~~d~vViAtG~~~~p~~ 178 (454)
.++.|--+|=|||.-.+|.+
T Consensus 314 ~~iPYG~lVWatG~~~rp~~ 333 (491)
T KOG2495|consen 314 EEIPYGLLVWATGNGPRPVI 333 (491)
T ss_pred eeecceEEEecCCCCCchhh
Confidence 68999999999995444443
No 343
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.64 E-value=6.3e-05 Score=73.73 Aligned_cols=35 Identities=43% Similarity=0.424 Sum_probs=32.6
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCC
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDV 47 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~ 47 (454)
.||+|||||++|+.+|..|++.|++|+|||+++..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 58999999999999999999999999999987654
No 344
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.63 E-value=0.00015 Score=70.92 Aligned_cols=32 Identities=41% Similarity=0.551 Sum_probs=30.1
Q ss_pred cEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD 46 (454)
Q Consensus 14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~ 46 (454)
||+|||+|.|||++|.+|.+. ++|+|+.|.+.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~ 40 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPL 40 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCC
Confidence 899999999999999999988 99999999764
No 345
>PLN02976 amine oxidase
Probab=97.61 E-value=6.6e-05 Score=82.64 Aligned_cols=43 Identities=47% Similarity=0.816 Sum_probs=40.0
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYD 54 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~ 54 (454)
.++|+|||||++|+++|..|.+.|++|+|||+++.+||.|...
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~ 735 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTD 735 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeec
Confidence 4789999999999999999999999999999999999987654
No 346
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.60 E-value=7e-05 Score=76.36 Aligned_cols=40 Identities=25% Similarity=0.290 Sum_probs=37.7
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL 52 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~ 52 (454)
+||+|||+||+|+.+|+.|++.|++|++||+....||.|.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~ 40 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKI 40 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcc
Confidence 5899999999999999999999999999999999988775
No 347
>PRK05868 hypothetical protein; Validated
Probab=97.60 E-value=0.00019 Score=70.74 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=32.3
Q ss_pred CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575 206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI 240 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~ 240 (454)
++|+|||||+.|+-+|..|++.|.+|+++++.+.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 47999999999999999999999999999987654
No 348
>PRK07236 hypothetical protein; Provisional
Probab=97.60 E-value=0.00019 Score=71.06 Aligned_cols=87 Identities=24% Similarity=0.319 Sum_probs=62.9
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc----------cchhhhcc------------------------
Q 044575 205 NEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE----------GLSKVISK------------------------ 250 (454)
Q Consensus 205 ~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~----------~~~~~l~~------------------------ 250 (454)
..+|+|||||.+|+.+|..|++.|.+|+++++.+.... ...+.+.+
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~ 85 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDGR 85 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCCC
Confidence 47899999999999999999999999999999764210 00000000
Q ss_pred --------------------------CCCeEEcCceeEEecCC---cEEEeCCCEEeeceEEEccCcccC
Q 044575 251 --------------------------HNNLHLHPQIDCLREDG---RVTFVDGCWVTADTILYCTGYSYS 291 (454)
Q Consensus 251 --------------------------~~~i~~~~~v~~v~~~~---~v~~~dG~~i~~D~vI~atG~~~~ 291 (454)
...++.+..+++++.++ .|++.||+++.+|.||.|-|....
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~ 155 (386)
T PRK07236 86 VVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRST 155 (386)
T ss_pred EeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCch
Confidence 01255566677776433 477889999999999999997643
No 349
>PRK06753 hypothetical protein; Provisional
Probab=97.57 E-value=0.00019 Score=70.78 Aligned_cols=85 Identities=19% Similarity=0.300 Sum_probs=62.0
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc------------------cchhh---------------------
Q 044575 207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE------------------GLSKV--------------------- 247 (454)
Q Consensus 207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~------------------~~~~~--------------------- 247 (454)
+|+|||||++|+-+|..|++.|.+|+++++.+.+.. ++.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~ 81 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL 81 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence 699999999999999999999999999998875400 00000
Q ss_pred ----------------------hcc---CCCeEEcCceeEEecCC---cEEEeCCCEEeeceEEEccCcccC
Q 044575 248 ----------------------ISK---HNNLHLHPQIDCLREDG---RVTFVDGCWVTADTILYCTGYSYS 291 (454)
Q Consensus 248 ----------------------l~~---~~~i~~~~~v~~v~~~~---~v~~~dG~~i~~D~vI~atG~~~~ 291 (454)
|.+ ...++.+..++++..++ .|++++|+++++|+||-|.|....
T Consensus 82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~ 153 (373)
T PRK06753 82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSK 153 (373)
T ss_pred eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchH
Confidence 000 01255677777775433 467789999999999999997633
No 350
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.53 E-value=0.00012 Score=71.90 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=35.9
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCccc
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQW 51 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w 51 (454)
.+||+|||||..|--||.-..-+|+++.++|+++.-.|+-
T Consensus 67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTS 106 (680)
T KOG0042|consen 67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTS 106 (680)
T ss_pred cccEEEECCCccCcceeehhhcccceeEEEecccccCCcc
Confidence 5899999999999999999999999999999988655543
No 351
>PRK07588 hypothetical protein; Provisional
Probab=97.52 E-value=0.00025 Score=70.45 Aligned_cols=34 Identities=18% Similarity=0.311 Sum_probs=31.3
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575 207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI 240 (454)
Q Consensus 207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~ 240 (454)
+|+|||||++|+-+|..|++.|.+|+++++.+..
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPEL 35 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCc
Confidence 6999999999999999999999999999987654
No 352
>PLN02463 lycopene beta cyclase
Probab=97.52 E-value=0.00027 Score=70.93 Aligned_cols=33 Identities=24% Similarity=0.243 Sum_probs=30.5
Q ss_pred CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575 206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL 238 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~ 238 (454)
-.|+|||+|++|.-+|..|++.|.+|.++++.+
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~ 61 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP 61 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence 379999999999999999999999999999865
No 353
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.48 E-value=0.00013 Score=79.57 Aligned_cols=83 Identities=16% Similarity=0.016 Sum_probs=57.0
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc-------cc--hh--------hhccC-CCeEEcCceeEEec
Q 044575 204 RNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE-------GL--SK--------VISKH-NNLHLHPQIDCLRE 265 (454)
Q Consensus 204 ~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~-------~~--~~--------~l~~~-~~i~~~~~v~~v~~ 265 (454)
.+|+|+|||+|++|+-+|..|++.|.+|+++++.+.+.. .+ .+ .+.+. +++..+..+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~v----- 379 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVV----- 379 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEe-----
Confidence 589999999999999999999999999999999876521 11 10 11111 123332211
Q ss_pred CCcEEEeCCCEEeeceEEEccCcc-cC
Q 044575 266 DGRVTFVDGCWVTADTILYCTGYS-YS 291 (454)
Q Consensus 266 ~~~v~~~dG~~i~~D~vI~atG~~-~~ 291 (454)
+..+.+++.....+|.||+|||.. |.
T Consensus 380 G~dit~~~l~~~~yDAV~LAtGA~~pr 406 (944)
T PRK12779 380 GKTATLEDLKAAGFWKIFVGTGAGLPT 406 (944)
T ss_pred ccEEeHHHhccccCCEEEEeCCCCCCC
Confidence 123666666666799999999984 54
No 354
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.47 E-value=0.0014 Score=61.02 Aligned_cols=44 Identities=36% Similarity=0.457 Sum_probs=36.8
Q ss_pred CCCcEEEECcChHHHHHHHHHHHc----CCcEEEEeeCCC---------CCcccccC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKE----GHRVVVLEQNHD---------VGGQWLYD 54 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~----g~~v~vie~~~~---------~GG~w~~~ 54 (454)
.+.+|+|||||-.|.+.|..|+++ |++|+|+|+.+. +||.|..-
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQF 141 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQF 141 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeec
Confidence 367999999999999999999764 789999999775 57776543
No 355
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.47 E-value=0.00018 Score=77.87 Aligned_cols=82 Identities=12% Similarity=0.064 Sum_probs=55.3
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchh-----------------hhcc-CCCeEEcCceeEEe
Q 044575 203 FRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSK-----------------VISK-HNNLHLHPQIDCLR 264 (454)
Q Consensus 203 ~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~-----------------~l~~-~~~i~~~~~v~~v~ 264 (454)
..+|+|+|||+|++|+.+|..|++.|.+|+++++.+.+...+.. .+.+ .++++.+..+
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V---- 612 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP---- 612 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee----
Confidence 35789999999999999999999999999999987654211100 0111 1233333332
Q ss_pred cCCcEEEeCCCEEeeceEEEccCcccC
Q 044575 265 EDGRVTFVDGCWVTADTILYCTGYSYS 291 (454)
Q Consensus 265 ~~~~v~~~dG~~i~~D~vI~atG~~~~ 291 (454)
.+.+.+.....+|.||+|||..+.
T Consensus 613 ---di~le~L~~~gYDaVILATGA~~~ 636 (1019)
T PRK09853 613 ---DLTVEQLKNEGYDYVVVAIGADKN 636 (1019)
T ss_pred ---EEEhhhheeccCCEEEECcCCCCC
Confidence 123334445569999999999854
No 356
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.44 E-value=0.00056 Score=67.22 Aligned_cols=83 Identities=22% Similarity=0.406 Sum_probs=60.9
Q ss_pred eEEEEcCCCCHHHHHHHHhhh--cCeEEEecccCCcC---------ccch--------hhhc------------------
Q 044575 207 VVVVVGNSLSGQDISMELVEV--AKEVHLSAKSLNIS---------EGLS--------KVIS------------------ 249 (454)
Q Consensus 207 ~vvVVG~G~sg~e~A~~l~~~--~~~V~l~~r~~~~~---------~~~~--------~~l~------------------ 249 (454)
.|+|||+|.+|+.+|..|++. +.+|.++++.+... ..+. ..+.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 389999999999999999987 89999999876331 1111 0000
Q ss_pred ----------------c--CCCeEEcCceeEEecCCcEEEeCCCEEeeceEEEccCccc
Q 044575 250 ----------------K--HNNLHLHPQIDCLREDGRVTFVDGCWVTADTILYCTGYSY 290 (454)
Q Consensus 250 ----------------~--~~~i~~~~~v~~v~~~~~v~~~dG~~i~~D~vI~atG~~~ 290 (454)
+ ...++.+..|+++..++ |+++||+++++|.||.|.|..+
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~~-v~l~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDADG-VDLAPGTRINARSVIDCRGFKP 138 (370)
T ss_pred CCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCCE-EEECCCCEEEeeEEEECCCCCC
Confidence 0 01255667788886554 8889999999999999999765
No 357
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.44 E-value=0.0044 Score=66.92 Aligned_cols=34 Identities=26% Similarity=0.515 Sum_probs=31.3
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCc-EEEEeeCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHR-VVVLEQNH 45 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~-v~vie~~~ 45 (454)
.++|+|||||..|+-+|..+.+.|.+ |+++++++
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 47899999999999999999999987 99999864
No 358
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.44 E-value=0.00017 Score=69.04 Aligned_cols=42 Identities=36% Similarity=0.498 Sum_probs=36.2
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCC--cEEEEeeCCCCCcccc
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGH--RVVVLEQNHDVGGQWL 52 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~--~v~vie~~~~~GG~w~ 52 (454)
..++|+|+|||.+||++|.+|++.+. .|+++|+.+++||-..
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwir 53 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIR 53 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceee
Confidence 35799999999999999999999865 5677999999987544
No 359
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.43 E-value=0.00063 Score=68.37 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=31.9
Q ss_pred CeEEEEcCCCCHHHHHHHHhhhcCe-EEEecccCCc
Q 044575 206 EVVVVVGNSLSGQDISMELVEVAKE-VHLSAKSLNI 240 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~~~~-V~l~~r~~~~ 240 (454)
.+|+|||+|.+|+-+|..|.+.+.. +.++++...+
T Consensus 9 ~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~ 44 (443)
T COG2072 9 TDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDV 44 (443)
T ss_pred ccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCc
Confidence 5799999999999999999999988 9999998654
No 360
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.42 E-value=0.00042 Score=68.90 Aligned_cols=36 Identities=22% Similarity=0.379 Sum_probs=32.9
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575 205 NEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI 240 (454)
Q Consensus 205 ~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~ 240 (454)
..+|+|||+|.+|+-+|..|++.|.+|++++|.+.+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~ 39 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI 39 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc
Confidence 368999999999999999999999999999987654
No 361
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.41 E-value=0.00024 Score=72.80 Aligned_cols=35 Identities=34% Similarity=0.346 Sum_probs=29.6
Q ss_pred CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575 206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI 240 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~ 240 (454)
|+|+|||+|+||+-.|..|.+.|-+++++++++.+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~i 36 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDI 36 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCC
Confidence 79999999999999999999999999999998876
No 362
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.40 E-value=0.00012 Score=69.60 Aligned_cols=36 Identities=31% Similarity=0.528 Sum_probs=30.4
Q ss_pred CcEEEECcChHHHHHHHHHHHcC-CcEEEEeeCCCCC
Q 044575 13 KNVCVIGAGPSGLVAARELRKEG-HRVVVLEQNHDVG 48 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g-~~v~vie~~~~~G 48 (454)
||+||||+|+||..+|.+|++.+ .+|+|+|+.+...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCT
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCc
Confidence 69999999999999999999987 6999999987543
No 363
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=97.36 E-value=0.00062 Score=63.00 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=32.6
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575 205 NEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI 240 (454)
Q Consensus 205 ~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~ 240 (454)
.-.|+|||+|++|+=+|..+++.+.+|.+++|...+
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~ 56 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAF 56 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 357999999999999999999999999999998654
No 364
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.36 E-value=0.00082 Score=57.35 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=25.5
Q ss_pred EEEcCCCCHHHHHHHHhhhc-----CeEEEecccC
Q 044575 209 VVVGNSLSGQDISMELVEVA-----KEVHLSAKSL 238 (454)
Q Consensus 209 vVVG~G~sg~e~A~~l~~~~-----~~V~l~~r~~ 238 (454)
+|||+|++|+-++..|.+.. .+|+++++.+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~ 35 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP 35 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence 59999999999999999873 4699998844
No 365
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.35 E-value=0.0005 Score=69.41 Aligned_cols=58 Identities=17% Similarity=0.030 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCC
Q 044575 100 HKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYS 174 (454)
Q Consensus 100 ~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~ 174 (454)
..-+...+...|+..|.. |..++.|++|....++ .|-|.+..+ .+++.++|-|+|.++
T Consensus 186 P~~lC~ala~~A~~~GA~--viE~cpV~~i~~~~~~---------~~gVeT~~G------~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 186 PAGLCQALARAASALGAL--VIENCPVTGLHVETDK---------FGGVETPHG------SIETECVVNAAGVWA 243 (856)
T ss_pred HHHHHHHHHHHHHhcCcE--EEecCCcceEEeecCC---------ccceeccCc------ceecceEEechhHHH
Confidence 345667778888888988 8899999999876654 777888776 689999999999765
No 366
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.35 E-value=0.0025 Score=63.16 Aligned_cols=43 Identities=28% Similarity=0.403 Sum_probs=36.7
Q ss_pred CCcEEEECcChHHHHHHHHHHHc----CCcEEEEeeCCCCCcccccC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKE----GHRVVVLEQNHDVGGQWLYD 54 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~----g~~v~vie~~~~~GG~w~~~ 54 (454)
.++.=|||+|.|+|+||..|.+. |-+|+|+|+.+..||.+.-.
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~ 48 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGA 48 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCC
Confidence 36788999999999999999886 56999999999988876443
No 367
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.35 E-value=0.0091 Score=60.66 Aligned_cols=34 Identities=24% Similarity=0.366 Sum_probs=30.9
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH 45 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~ 45 (454)
.++|+|||+|..|+.+|..+.+.|. +|+++++++
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 4789999999999999999999996 799999865
No 368
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.30 E-value=0.0022 Score=65.24 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=29.1
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH 45 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~ 45 (454)
.++|+|||+|+.|+-+|..+.+.|. +|++++...
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~ 315 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP 315 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC
Confidence 4789999999999999999999886 788777543
No 369
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.29 E-value=0.0083 Score=63.57 Aligned_cols=35 Identities=34% Similarity=0.482 Sum_probs=31.1
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH 45 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~ 45 (454)
..++|+|||||..|+-+|..+++.|. +|+++.+++
T Consensus 322 ~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 322 PGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 35789999999999999999999987 699999864
No 370
>PRK02106 choline dehydrogenase; Validated
Probab=97.28 E-value=0.00027 Score=73.62 Aligned_cols=35 Identities=31% Similarity=0.453 Sum_probs=32.6
Q ss_pred CCCcEEEECcChHHHHHHHHHHH-cCCcEEEEeeCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRK-EGHRVVVLEQNH 45 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~-~g~~v~vie~~~ 45 (454)
..+|+||||+|+||+.+|.+|++ .|.+|+|+|+.+
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 45899999999999999999999 799999999985
No 371
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.26 E-value=0.00083 Score=66.20 Aligned_cols=84 Identities=20% Similarity=0.330 Sum_probs=61.2
Q ss_pred EEEEcCCCCHHHHHHHH--hhhcCeEEEecccCCc--C---------cc---chhhh-----------------------
Q 044575 208 VVVVGNSLSGQDISMEL--VEVAKEVHLSAKSLNI--S---------EG---LSKVI----------------------- 248 (454)
Q Consensus 208 vvVVG~G~sg~e~A~~l--~~~~~~V~l~~r~~~~--~---------~~---~~~~l----------------------- 248 (454)
|+|||+|++|.-+|..| ++.+.+|.++++.+.. . +. +.+.+
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~Y 81 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYPY 81 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccce
Confidence 89999999999999999 7789999999876543 0 00 11110
Q ss_pred ----------------ccCCCeEEcCceeEEecCC---cEEEeCCCEEeeceEEEccCcccC
Q 044575 249 ----------------SKHNNLHLHPQIDCLREDG---RVTFVDGCWVTADTILYCTGYSYS 291 (454)
Q Consensus 249 ----------------~~~~~i~~~~~v~~v~~~~---~v~~~dG~~i~~D~vI~atG~~~~ 291 (454)
...+.++....|+++..++ .|+++||+++.++.||-|+|..+.
T Consensus 82 ~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 82 CMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred EEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 1112356677788887554 467889999999999999997643
No 372
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.24 E-value=0.00071 Score=67.21 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=30.8
Q ss_pred CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575 206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL 238 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~ 238 (454)
.+|+|||||++|+-+|..|++.|.+|+++++.+
T Consensus 7 ~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 7 RDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 469999999999999999999999999999864
No 373
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.23 E-value=0.00016 Score=73.00 Aligned_cols=37 Identities=19% Similarity=0.156 Sum_probs=33.6
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhh--hcCeEEEecccCCc
Q 044575 204 RNEVVVVVGNSLSGQDISMELVE--VAKEVHLSAKSLNI 240 (454)
Q Consensus 204 ~~k~vvVVG~G~sg~e~A~~l~~--~~~~V~l~~r~~~~ 240 (454)
.+++|+|||+|++|+..|..|++ .+.+|+++++.+.+
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p 63 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTP 63 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence 45899999999999999999986 68999999998876
No 374
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.23 E-value=0.0043 Score=65.88 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=30.5
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH 45 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~ 45 (454)
.++|+|||||..|+-+|..+.+.|. +|+++.+++
T Consensus 468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 4689999999999999999999987 799999864
No 375
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.21 E-value=0.0011 Score=66.09 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=33.9
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575 205 NEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI 240 (454)
Q Consensus 205 ~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~ 240 (454)
.++|+|||+|++|+-.|..|.+.|.+|++++|++.+
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~i 41 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDI 41 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCc
Confidence 478999999999999999999999999999998876
No 376
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=97.20 E-value=0.00045 Score=63.72 Aligned_cols=91 Identities=15% Similarity=0.218 Sum_probs=64.6
Q ss_pred CeEEEEcCCCCHHHHHHHHhhh-c-CeEEEecccCCc--Cc-------cchhhhccC---------CCeEEcCceeEEec
Q 044575 206 EVVVVVGNSLSGQDISMELVEV-A-KEVHLSAKSLNI--SE-------GLSKVISKH---------NNLHLHPQIDCLRE 265 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~-~-~~V~l~~r~~~~--~~-------~~~~~l~~~---------~~i~~~~~v~~v~~ 265 (454)
-.|+|||||.-|+-+|..+.+. + .+|-+++..+.. .| ++..+-+.+ ...+....|+++.+
T Consensus 40 ~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~ekv~~f~P 119 (446)
T KOG3851|consen 40 FKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIKEKVKEFNP 119 (446)
T ss_pred eEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHHHHHHHhcCC
Confidence 3699999999999999999875 2 457777765543 11 122111111 12345567888876
Q ss_pred CC-cEEEeCCCEEeeceEEEccCcccCCcCCC
Q 044575 266 DG-RVTFVDGCWVTADTILYCTGYSYSFPFLD 296 (454)
Q Consensus 266 ~~-~v~~~dG~~i~~D~vI~atG~~~~~~~l~ 296 (454)
+. .|.+.+|++|.+|.+|+|+|.+-++.-+.
T Consensus 120 ~~N~v~t~gg~eIsYdylviA~Giql~y~~Ik 151 (446)
T KOG3851|consen 120 DKNTVVTRGGEEISYDYLVIAMGIQLDYGKIK 151 (446)
T ss_pred CcCeEEccCCcEEeeeeEeeeeeceeccchhc
Confidence 64 79999999999999999999998776543
No 377
>PRK06834 hypothetical protein; Provisional
Probab=97.19 E-value=0.00098 Score=68.04 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=31.5
Q ss_pred CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575 206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN 239 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~ 239 (454)
..|+|||+|++|+-+|..|++.|.+|+++++.+.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~ 37 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN 37 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 4799999999999999999999999999998764
No 378
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.17 E-value=0.0011 Score=66.48 Aligned_cols=34 Identities=18% Similarity=0.388 Sum_probs=31.1
Q ss_pred eEEEEcCCCCHHHHHHHHhhhc-CeEEEecccCCc
Q 044575 207 VVVVVGNSLSGQDISMELVEVA-KEVHLSAKSLNI 240 (454)
Q Consensus 207 ~vvVVG~G~sg~e~A~~l~~~~-~~V~l~~r~~~~ 240 (454)
+|+|||||..|+=+|..|++.| .+|++++|.+.+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~ 36 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF 36 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC
Confidence 6999999999999999999988 499999998765
No 379
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.14 E-value=0.0012 Score=65.47 Aligned_cols=32 Identities=22% Similarity=0.373 Sum_probs=30.8
Q ss_pred CeEEEEcCCCCHHHHHHHHhhhcCeEEEeccc
Q 044575 206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKS 237 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~ 237 (454)
.+|+|||||++|+=+|..|++.|.+|+++++.
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 57999999999999999999999999999998
No 380
>PRK09126 hypothetical protein; Provisional
Probab=97.13 E-value=0.0012 Score=65.53 Aligned_cols=34 Identities=24% Similarity=0.266 Sum_probs=31.1
Q ss_pred CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575 206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN 239 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~ 239 (454)
-+|+|||||++|+-+|..|++.|.+|+++++.+.
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 3699999999999999999999999999998753
No 381
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.13 E-value=0.0013 Score=65.16 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=30.2
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575 207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN 239 (454)
Q Consensus 207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~ 239 (454)
.|+|||+|++|.-+|..|++.|.+|+++++.+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~ 33 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPP 33 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC
Confidence 389999999999999999999999999998754
No 382
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.13 E-value=0.01 Score=57.00 Aligned_cols=55 Identities=22% Similarity=0.329 Sum_probs=41.3
Q ss_pred EEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCCCCCCCCCC-CCCcC
Q 044575 120 IRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGHYSYPRLPS-IKGMD 185 (454)
Q Consensus 120 i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~~~~p~~p~-i~G~~ 185 (454)
+.-+++|.+++...++ ...++++...+++..++++|.||+||| -....|. +.|+.
T Consensus 295 l~~~~ev~~~~~~G~g---------~~~l~~~~~~~~~~~t~~~D~vIlATG--Y~~~~P~fL~~l~ 350 (436)
T COG3486 295 LLSLSEVQSVEPAGDG---------RYRLTLRHHETGELETVETDAVILATG--YRRAVPSFLEGLA 350 (436)
T ss_pred eccccceeeeecCCCc---------eEEEEEeeccCCCceEEEeeEEEEecc--cccCCchhhhhHH
Confidence 5668889998877653 688888877667778899999999999 5555553 34544
No 383
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.13 E-value=0.0025 Score=55.96 Aligned_cols=40 Identities=20% Similarity=0.301 Sum_probs=35.2
Q ss_pred CCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575 201 EPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI 240 (454)
Q Consensus 201 ~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~ 240 (454)
.++....|+|||+|+||+-.|..|++.+-+|.+++|+-.+
T Consensus 26 ~~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~ 65 (262)
T COG1635 26 LDYLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSF 65 (262)
T ss_pred HhhhhccEEEECcCcchHHHHHHHHhCCceEEEEEeeccc
Confidence 3444568999999999999999999999999999998766
No 384
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.12 E-value=0.0012 Score=68.02 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=30.1
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575 207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSL 238 (454)
Q Consensus 207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~ 238 (454)
.|+|||||+.|+++|..+++.|.+|.++++..
T Consensus 6 DVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~ 37 (618)
T PRK05192 6 DVIVVGGGHAGCEAALAAARMGAKTLLLTHNL 37 (618)
T ss_pred eEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence 69999999999999999999999999999873
No 385
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.11 E-value=0.0015 Score=65.90 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=32.0
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH 45 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~ 45 (454)
+.++|+|||+|.+|+-.|..|.+.+.+|+++.++.
T Consensus 203 ~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 203 KNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 35789999999999999999999999999999864
No 386
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.10 E-value=0.0012 Score=65.22 Aligned_cols=33 Identities=21% Similarity=0.400 Sum_probs=30.2
Q ss_pred eEEEEcCCCCHHHHHHHHhhhc-CeEEEecccCC
Q 044575 207 VVVVVGNSLSGQDISMELVEVA-KEVHLSAKSLN 239 (454)
Q Consensus 207 ~vvVVG~G~sg~e~A~~l~~~~-~~V~l~~r~~~ 239 (454)
.|+|||+|++|+-+|..|++.| .+|+++++.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 3899999999999999999999 99999998653
No 387
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.08 E-value=0.00067 Score=69.28 Aligned_cols=79 Identities=22% Similarity=0.284 Sum_probs=54.5
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc-CccchhhhccC-CCeEEcCceeEEecCCcEEEeCCCEEeece
Q 044575 204 RNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI-SEGLSKVISKH-NNLHLHPQIDCLREDGRVTFVDGCWVTADT 281 (454)
Q Consensus 204 ~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~-~~~~~~~l~~~-~~i~~~~~v~~v~~~~~v~~~dG~~i~~D~ 281 (454)
.+++|+|||+|.+|+++|..|.+.|.+|+++++++.. ...+.+.+.+. ..+..+..+ . ....+|+
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~---------~----~~~~~D~ 81 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGP---------T----LPEDTDL 81 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCc---------c----ccCCCCE
Confidence 5689999999999999999999999999999876532 11222223222 122222111 1 1245999
Q ss_pred EEEccCcccCCcCC
Q 044575 282 ILYCTGYSYSFPFL 295 (454)
Q Consensus 282 vI~atG~~~~~~~l 295 (454)
||.++|..|+.|++
T Consensus 82 Vv~s~Gi~~~~~~~ 95 (480)
T PRK01438 82 VVTSPGWRPDAPLL 95 (480)
T ss_pred EEECCCcCCCCHHH
Confidence 99999999998874
No 388
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.05 E-value=0.0015 Score=65.18 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=29.8
Q ss_pred eEEEEcCCCCHHHHHHHHhhhc--CeEEEecccCC
Q 044575 207 VVVVVGNSLSGQDISMELVEVA--KEVHLSAKSLN 239 (454)
Q Consensus 207 ~vvVVG~G~sg~e~A~~l~~~~--~~V~l~~r~~~ 239 (454)
+|+|||||++|+=+|..|++.| .+|+++++.+.
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 5899999999999999999985 89999998754
No 389
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.04 E-value=0.00042 Score=69.15 Aligned_cols=37 Identities=19% Similarity=0.094 Sum_probs=33.0
Q ss_pred CCCeEEEEcCCCCHHHHHHHHh-hhcCeEEEecccCCc
Q 044575 204 RNEVVVVVGNSLSGQDISMELV-EVAKEVHLSAKSLNI 240 (454)
Q Consensus 204 ~~k~vvVVG~G~sg~e~A~~l~-~~~~~V~l~~r~~~~ 240 (454)
.+++|+|||+|++|+.+|..|. +.+.+|+++++.+.+
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~p 75 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNP 75 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 4689999999999999999765 568999999999887
No 390
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.04 E-value=0.0038 Score=60.83 Aligned_cols=36 Identities=36% Similarity=0.534 Sum_probs=32.0
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD 46 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~ 46 (454)
..+||+|||||.||..||.+.++.|.+.+++-.+-+
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld 62 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLD 62 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeecccc
Confidence 468999999999999999999999999988886543
No 391
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.03 E-value=0.00078 Score=62.53 Aligned_cols=34 Identities=26% Similarity=0.595 Sum_probs=31.7
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH 45 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~ 45 (454)
++||+|||||.||++|+.+|.+.|.++.||.+..
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 4799999999999999999999999999999764
No 392
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.01 E-value=0.0021 Score=63.76 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=31.2
Q ss_pred CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575 206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN 239 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~ 239 (454)
.+|+|||+|++|+-+|..|++.|.+|+++++.+.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 3699999999999999999999999999998754
No 393
>PRK07045 putative monooxygenase; Reviewed
Probab=97.01 E-value=0.0021 Score=63.72 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=32.0
Q ss_pred CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575 206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI 240 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~ 240 (454)
-+|+|||||++|+=+|..|++.|.+|+++++.+.+
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 47999999999999999999999999999987754
No 394
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.00 E-value=0.0059 Score=67.74 Aligned_cols=96 Identities=19% Similarity=0.115 Sum_probs=66.7
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK 90 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (454)
.++|+|||+|+.|+.+|..|++.|. .|+|+|..+.+
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~------------------------------------------- 353 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV------------------------------------------- 353 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch-------------------------------------------
Confidence 4789999999999999999999995 58899875421
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575 91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT 170 (454)
Q Consensus 91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt 170 (454)
...+.+.+++.++. ++.++.|..+...+. .-.|++.... +...++.+|.|+++.
T Consensus 354 -------------~~~l~~~L~~~GV~--i~~~~~v~~i~g~~~----------v~~V~l~~~~-g~~~~i~~D~V~va~ 407 (985)
T TIGR01372 354 -------------SPEARAEARELGIE--VLTGHVVAATEGGKR----------VSGVAVARNG-GAGQRLEADALAVSG 407 (985)
T ss_pred -------------hHHHHHHHHHcCCE--EEcCCeEEEEecCCc----------EEEEEEEecC-CceEEEECCEEEEcC
Confidence 01123344566777 888999988864321 1224443211 223478999999999
Q ss_pred CCCCCCCC
Q 044575 171 GHYSYPRL 178 (454)
Q Consensus 171 G~~~~p~~ 178 (454)
| ..|+.
T Consensus 408 G--~~Pnt 413 (985)
T TIGR01372 408 G--WTPVV 413 (985)
T ss_pred C--cCchh
Confidence 9 77765
No 395
>PRK06184 hypothetical protein; Provisional
Probab=97.00 E-value=0.0019 Score=66.36 Aligned_cols=35 Identities=23% Similarity=0.328 Sum_probs=32.1
Q ss_pred CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575 206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI 240 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~ 240 (454)
-.|+|||+|++|+-+|..|++.|.+|+++++.+.+
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~ 38 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP 38 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 46999999999999999999999999999987654
No 396
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=96.99 E-value=0.0018 Score=64.01 Aligned_cols=33 Identities=18% Similarity=0.373 Sum_probs=30.6
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575 207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN 239 (454)
Q Consensus 207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~ 239 (454)
.|+|||+|++|.=+|..|++.|.+|++++|.+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence 389999999999999999999999999999863
No 397
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=96.99 E-value=0.001 Score=64.78 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=29.8
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCeEEEeccc
Q 044575 207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKS 237 (454)
Q Consensus 207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~ 237 (454)
.|+|||+|.+|+-+|.+|++.|.+|+++++.
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 4899999999999999999999999999998
No 398
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=96.99 E-value=0.001 Score=61.84 Aligned_cols=43 Identities=49% Similarity=0.918 Sum_probs=37.2
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC--CCCcc--cccC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH--DVGGQ--WLYD 54 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~--~~GG~--w~~~ 54 (454)
..||+|||||.|||.||.+|+..|.+|+|+|++. .+||+ |++.
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAfWSfG 51 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAFWSFG 51 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccceeeeecc
Confidence 5799999999999999999999999999999865 46775 5544
No 399
>PRK08013 oxidoreductase; Provisional
Probab=96.97 E-value=0.0021 Score=63.99 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=31.3
Q ss_pred CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575 206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN 239 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~ 239 (454)
.+|+|||+|++|.=+|..|++.|.+|+++++.+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 4699999999999999999999999999998764
No 400
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=96.96 E-value=0.0026 Score=60.82 Aligned_cols=97 Identities=31% Similarity=0.365 Sum_probs=67.2
Q ss_pred CCCcEEEECcChHHHHHHHHHHHc----CCcEE-EEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKE----GHRVV-VLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFP 85 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~----g~~v~-vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (454)
+...|.|||+|+-|-..|..|.++ |.+|. ||+..-..
T Consensus 346 ek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm-------------------------------------- 387 (659)
T KOG1346|consen 346 EKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNM-------------------------------------- 387 (659)
T ss_pred hcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCCh--------------------------------------
Confidence 357899999999999999999875 44443 55543211
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHH----HHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEE
Q 044575 86 FVLKKGRDVRRFPGHKELWLYLKD----FCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEE 161 (454)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~yl~~----~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 161 (454)
.+-+-+||.+ -.++-|+. ++-|..|.++.+... ...+.++++. ++
T Consensus 388 --------------~kiLPeyls~wt~ekir~~GV~--V~pna~v~sv~~~~~----------nl~lkL~dG~-----~l 436 (659)
T KOG1346|consen 388 --------------EKILPEYLSQWTIEKIRKGGVD--VRPNAKVESVRKCCK----------NLVLKLSDGS-----EL 436 (659)
T ss_pred --------------hhhhHHHHHHHHHHHHHhcCce--eccchhhhhhhhhcc----------ceEEEecCCC-----ee
Confidence 0112233332 33445766 788889988876643 6678888876 88
Q ss_pred EeCEEEEccCCCCCCCC
Q 044575 162 VFDAVVVATGHYSYPRL 178 (454)
Q Consensus 162 ~~d~vViAtG~~~~p~~ 178 (454)
+.|.||+|+| ..|+.
T Consensus 437 ~tD~vVvavG--~ePN~ 451 (659)
T KOG1346|consen 437 RTDLVVVAVG--EEPNS 451 (659)
T ss_pred eeeeEEEEec--CCCch
Confidence 9999999999 78875
No 401
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.96 E-value=0.001 Score=72.55 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=33.8
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575 204 RNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI 240 (454)
Q Consensus 204 ~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~ 240 (454)
.+++|+|||||+.|+..|..|++.|.+|+++++.+.+
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~l 572 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKP 572 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccccc
Confidence 4579999999999999999999999999999987654
No 402
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=96.96 E-value=0.0022 Score=60.65 Aligned_cols=33 Identities=30% Similarity=0.295 Sum_probs=30.7
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575 207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN 239 (454)
Q Consensus 207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~ 239 (454)
.|+|||+|++|+-+|..|++.|.+|+++++.+.
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 489999999999999999999999999998864
No 403
>PLN02697 lycopene epsilon cyclase
Probab=96.95 E-value=0.0022 Score=65.67 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=30.9
Q ss_pred CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575 206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI 240 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~ 240 (454)
-.|+|||+|++|+-+|..+++.|.+|.++.+...+
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~ 143 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF 143 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccC
Confidence 47999999999999999999999999999875433
No 404
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.94 E-value=0.0015 Score=64.51 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=30.7
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575 207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN 239 (454)
Q Consensus 207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~ 239 (454)
+|+|||||.+|+|+|..|++.|.+|+++++++.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 699999999999999999999999999997665
No 405
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.011 Score=56.01 Aligned_cols=99 Identities=27% Similarity=0.250 Sum_probs=69.6
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK 90 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (454)
..++|+|||||-+++-.|..|.+.+.+|+++=|++.+
T Consensus 142 ~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~------------------------------------------- 178 (305)
T COG0492 142 KGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEF------------------------------------------- 178 (305)
T ss_pred cCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCccc-------------------------------------------
Confidence 3569999999999999999999999999999987643
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575 91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT 170 (454)
Q Consensus 91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt 170 (454)
...+.+.+-+++.. ++. +.+++.+..+.-.+ .-.|++.+.. ++...+.+|.|+++.
T Consensus 179 -------ra~~~~~~~l~~~~---~i~--~~~~~~i~ei~G~~-----------v~~v~l~~~~-~~~~~~~~~gvf~~i 234 (305)
T COG0492 179 -------RAEEILVERLKKNV---KIE--VLTNTVVKEILGDD-----------VEGVVLKNVK-GEEKELPVDGVFIAI 234 (305)
T ss_pred -------CcCHHHHHHHHhcC---CeE--EEeCCceeEEecCc-----------cceEEEEecC-CceEEEEeceEEEec
Confidence 11123333332211 444 78899998887543 1235555543 445588999999999
Q ss_pred CCCCCCCC
Q 044575 171 GHYSYPRL 178 (454)
Q Consensus 171 G~~~~p~~ 178 (454)
| ..|+.
T Consensus 235 G--~~p~~ 240 (305)
T COG0492 235 G--HLPNT 240 (305)
T ss_pred C--CCCch
Confidence 9 66664
No 406
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=96.92 E-value=0.0047 Score=57.31 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=32.4
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575 205 NEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI 240 (454)
Q Consensus 205 ~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~ 240 (454)
.-.|+|||+|++|+-+|..+++.|.+|.++++...+
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~ 60 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSF 60 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 357999999999999999999999999999987654
No 407
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.92 E-value=0.0011 Score=71.15 Aligned_cols=36 Identities=19% Similarity=0.135 Sum_probs=33.3
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575 203 FRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL 238 (454)
Q Consensus 203 ~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~ 238 (454)
..+|+|+|||+|+.|+.+|..|+..|.+|+++++.+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 468999999999999999999999999999999753
No 408
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.91 E-value=0.0025 Score=63.63 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=30.3
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575 207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSL 238 (454)
Q Consensus 207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~ 238 (454)
.|+|||||++|+-+|..|++.|.+|+++++.+
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred cEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 69999999999999999999999999999875
No 409
>PRK06475 salicylate hydroxylase; Provisional
Probab=96.85 E-value=0.0031 Score=62.83 Aligned_cols=35 Identities=17% Similarity=0.314 Sum_probs=32.4
Q ss_pred CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575 206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI 240 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~ 240 (454)
++|+|||||+.|+-+|..|++.|.+|+++++.+.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~ 37 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL 37 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 68999999999999999999999999999988754
No 410
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=96.85 E-value=0.0035 Score=62.09 Aligned_cols=34 Identities=32% Similarity=0.378 Sum_probs=31.2
Q ss_pred CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575 206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN 239 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~ 239 (454)
-+|+|||||++|+-+|..|++.|.+|+++++.+.
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAP 39 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 3699999999999999999999999999998755
No 411
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.85 E-value=0.018 Score=60.93 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=30.5
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH 45 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~ 45 (454)
.++|+|||+|..|+-+|..+.+.|. +|+++.+++
T Consensus 451 gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~ 485 (639)
T PRK12809 451 GKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRD 485 (639)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 4789999999999999999999985 799999864
No 412
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.84 E-value=0.0028 Score=63.41 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=31.5
Q ss_pred CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575 206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN 239 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~ 239 (454)
.+|+|||||+.|+=+|..|++.|.+|+++++.+.
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 5799999999999999999999999999998764
No 413
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.84 E-value=0.0033 Score=62.21 Aligned_cols=32 Identities=16% Similarity=0.306 Sum_probs=30.1
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575 207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSL 238 (454)
Q Consensus 207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~ 238 (454)
+|+|||||+.|.-+|..|++.|.+|+++++.+
T Consensus 5 dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 5 DIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 69999999999999999999999999999764
No 414
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=96.84 E-value=0.002 Score=62.65 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=30.1
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575 207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI 240 (454)
Q Consensus 207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~ 240 (454)
.|+|||||++|+=+|..|++.|.+|++++|.+..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 5999999999999999999999999999998765
No 415
>PRK07190 hypothetical protein; Provisional
Probab=96.83 E-value=0.0031 Score=64.39 Aligned_cols=35 Identities=17% Similarity=0.019 Sum_probs=31.7
Q ss_pred CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575 206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI 240 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~ 240 (454)
-.|+|||+|++|+=+|..|++.|.+|.++++.+..
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~ 40 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP 40 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 46999999999999999999999999999987653
No 416
>PRK08244 hypothetical protein; Provisional
Probab=96.83 E-value=0.003 Score=64.83 Aligned_cols=35 Identities=14% Similarity=0.185 Sum_probs=31.9
Q ss_pred CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575 206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI 240 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~ 240 (454)
-.|+|||+|++|+-+|..|++.|.+|+++++.+..
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~ 37 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKET 37 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 36999999999999999999999999999987654
No 417
>PRK13984 putative oxidoreductase; Provisional
Probab=96.82 E-value=0.042 Score=57.89 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=25.9
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCC------cEEEEe
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGH------RVVVLE 42 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~------~v~vie 42 (454)
.++|+|||||..|+-+|..|.+.+. +|+++.
T Consensus 418 ~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~ 454 (604)
T PRK13984 418 PRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS 454 (604)
T ss_pred CCcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence 4789999999999999999988753 667664
No 418
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=96.79 E-value=0.0014 Score=63.47 Aligned_cols=49 Identities=35% Similarity=0.506 Sum_probs=42.9
Q ss_pred cCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCC
Q 044575 10 AQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTD 58 (454)
Q Consensus 10 ~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~ 58 (454)
...+|++|||+|..||.||..|++.|.+|+++|++..+||.-.++..++
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavteeivp 60 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVTEEIVP 60 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcceeeehhcc
Confidence 4469999999999999999999999999999999988998776655443
No 419
>PRK09897 hypothetical protein; Provisional
Probab=96.79 E-value=0.0035 Score=64.19 Aligned_cols=35 Identities=11% Similarity=0.222 Sum_probs=29.9
Q ss_pred CeEEEEcCCCCHHHHHHHHhhhcC--eEEEecccCCc
Q 044575 206 EVVVVVGNSLSGQDISMELVEVAK--EVHLSAKSLNI 240 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~~~--~V~l~~r~~~~ 240 (454)
++|+|||+|++|+-+|..|.+.+. +|++++++..+
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~ 38 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA 38 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC
Confidence 589999999999999999987654 79999986654
No 420
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=96.78 E-value=0.0034 Score=62.60 Aligned_cols=32 Identities=16% Similarity=0.276 Sum_probs=30.2
Q ss_pred CeEEEEcCCCCHHHHHHHHhhhcCeEEEeccc
Q 044575 206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKS 237 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~ 237 (454)
.+|+|||||++|+=+|..|++.|.+|+++++.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 47999999999999999999999999999985
No 421
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=96.78 E-value=0.003 Score=63.44 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=31.1
Q ss_pred CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575 206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN 239 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~ 239 (454)
-.|+|||+|++|.=+|..|++.|.+|.+++|.+.
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~ 39 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNS 39 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence 3699999999999999999999999999998654
No 422
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.71 E-value=0.0019 Score=63.58 Aligned_cols=33 Identities=27% Similarity=0.540 Sum_probs=31.1
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH 45 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~ 45 (454)
+||+|||+|++|+++|..+.+.|.+|+|+|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 589999999999999999999999999999865
No 423
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=96.71 E-value=0.0048 Score=61.22 Aligned_cols=33 Identities=15% Similarity=0.324 Sum_probs=30.6
Q ss_pred CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575 206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL 238 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~ 238 (454)
-.|+|||||+.|+-+|..|++.|.+|+++++.+
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 479999999999999999999999999999864
No 424
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=96.70 E-value=0.0025 Score=57.29 Aligned_cols=84 Identities=19% Similarity=0.328 Sum_probs=55.0
Q ss_pred EEEEcCCCCHHHHHHHHhhh--cCeEEEecccCCc-----CccchhhhccCC----C---------eEEcCceeEEe-cC
Q 044575 208 VVVVGNSLSGQDISMELVEV--AKEVHLSAKSLNI-----SEGLSKVISKHN----N---------LHLHPQIDCLR-ED 266 (454)
Q Consensus 208 vvVVG~G~sg~e~A~~l~~~--~~~V~l~~r~~~~-----~~~~~~~l~~~~----~---------i~~~~~v~~v~-~~ 266 (454)
.+|||||..|+-+|..|+.+ ..+|.++..++-. ...+.+.+.+.. + -.++. |..+. +.
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~-v~~~~s~e 80 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLEKFDVKEQNCHELGPDFRRFLND-VVTWDSSE 80 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccccchhhhcccHHHHHHh-hhhhcccc
Confidence 68999999999999999976 4567777766543 111222221110 0 00111 22232 22
Q ss_pred CcEEEeCCCEEeeceEEEccCcccCC
Q 044575 267 GRVTFVDGCWVTADTILYCTGYSYSF 292 (454)
Q Consensus 267 ~~v~~~dG~~i~~D~vI~atG~~~~~ 292 (454)
..+++.+|+++.++-+++|||++|-+
T Consensus 81 hci~t~~g~~~ky~kKOG~tg~kPkl 106 (334)
T KOG2755|consen 81 HCIHTQNGEKLKYFKLCLCTGYKPKL 106 (334)
T ss_pred ceEEecCCceeeEEEEEEecCCCcce
Confidence 36899999999999999999999864
No 425
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.0048 Score=57.56 Aligned_cols=106 Identities=25% Similarity=0.269 Sum_probs=79.4
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCCCC
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKKGR 92 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (454)
-+-+|||||..+|.||-.|+-.|++|++.=|+=-+
T Consensus 199 GkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~L--------------------------------------------- 233 (503)
T KOG4716|consen 199 GKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILL--------------------------------------------- 233 (503)
T ss_pred CceEEEccceeeeehhhhHhhcCCCcEEEEEEeec---------------------------------------------
Confidence 47899999999999999999999999999874211
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEccCC
Q 044575 93 DVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVATGH 172 (454)
Q Consensus 93 ~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAtG~ 172 (454)
..| .+++.+.+.+..+..|+. +.-.+...+|+..+++ +..|...+..+++.-+..||.|+.|.|
T Consensus 234 --rGF--Dqdmae~v~~~m~~~Gik--f~~~~vp~~Veq~~~g---------~l~v~~k~t~t~~~~~~~ydTVl~AiG- 297 (503)
T KOG4716|consen 234 --RGF--DQDMAELVAEHMEERGIK--FLRKTVPERVEQIDDG---------KLRVFYKNTNTGEEGEEEYDTVLWAIG- 297 (503)
T ss_pred --ccc--cHHHHHHHHHHHHHhCCc--eeecccceeeeeccCC---------cEEEEeecccccccccchhhhhhhhhc-
Confidence 011 167888888888888887 5445566778877665 666776665555555678999999999
Q ss_pred CCCCCCCC
Q 044575 173 YSYPRLPS 180 (454)
Q Consensus 173 ~~~p~~p~ 180 (454)
..+.+-+
T Consensus 298 -R~~~~~~ 304 (503)
T KOG4716|consen 298 -RKALTDD 304 (503)
T ss_pred -cccchhh
Confidence 5555443
No 426
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.64 E-value=0.022 Score=63.09 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=30.1
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNH 45 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~ 45 (454)
..++|+|||||..|+-+|..+.+.|. .|+++.++.
T Consensus 570 ~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~ 605 (1006)
T PRK12775 570 LGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRS 605 (1006)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 35799999999999999999999998 477887653
No 427
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.64 E-value=0.0018 Score=66.85 Aligned_cols=37 Identities=30% Similarity=0.466 Sum_probs=34.0
Q ss_pred ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575 9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH 45 (454)
Q Consensus 9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~ 45 (454)
|..++|+||||+|.+|..+|..|++.|.+|+|+|+..
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 4557999999999999999999998899999999974
No 428
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=96.60 E-value=0.00059 Score=59.19 Aligned_cols=41 Identities=37% Similarity=0.718 Sum_probs=35.3
Q ss_pred CCcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCCc-ccc
Q 044575 12 SKNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVGG-QWL 52 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~GG-~w~ 52 (454)
..||+|||||.+||+||..+.++ +.+|.|||.+-.+|| .|.
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWL 119 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWL 119 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccc
Confidence 36999999999999999999865 679999999888765 575
No 429
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.60 E-value=0.0043 Score=62.85 Aligned_cols=34 Identities=41% Similarity=0.664 Sum_probs=31.6
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH 45 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~ 45 (454)
.++|+|||+|..|+++|+.|++.|++|+++|++.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4789999999999999999999999999999853
No 430
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.59 E-value=0.01 Score=55.75 Aligned_cols=104 Identities=23% Similarity=0.230 Sum_probs=75.5
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK 90 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (454)
+.++++|+|||..++..|--++..|.++.++=|.+.+-
T Consensus 188 ~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvL------------------------------------------ 225 (478)
T KOG0405|consen 188 QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVL------------------------------------------ 225 (478)
T ss_pred cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhh------------------------------------------
Confidence 46899999999999999999999999999998876320
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575 91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT 170 (454)
Q Consensus 91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt 170 (454)
..| .+.+.+.+.+-.+.-++. ++.++.++.+.+..++ ...+....+. ....|.|+-|+
T Consensus 226 ----R~F--D~~i~~~v~~~~~~~gin--vh~~s~~~~v~K~~~g---------~~~~i~~~~~-----i~~vd~llwAi 283 (478)
T KOG0405|consen 226 ----RGF--DEMISDLVTEHLEGRGIN--VHKNSSVTKVIKTDDG---------LELVITSHGT-----IEDVDTLLWAI 283 (478)
T ss_pred ----cch--hHHHHHHHHHHhhhccee--ecccccceeeeecCCC---------ceEEEEeccc-----cccccEEEEEe
Confidence 000 134555556656666766 8888999999887664 4455554442 34599999999
Q ss_pred CCCCCCCCCC
Q 044575 171 GHYSYPRLPS 180 (454)
Q Consensus 171 G~~~~p~~p~ 180 (454)
| ..|+.-.
T Consensus 284 G--R~Pntk~ 291 (478)
T KOG0405|consen 284 G--RKPNTKG 291 (478)
T ss_pred c--CCCCccc
Confidence 9 7777653
No 431
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.57 E-value=0.0059 Score=60.20 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=29.5
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCeEEEeccc
Q 044575 207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKS 237 (454)
Q Consensus 207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~ 237 (454)
+|+|||||++|.-+|..|++.|.+|+++++.
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 5999999999999999999999999999975
No 432
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=96.56 E-value=0.0055 Score=63.55 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=32.1
Q ss_pred CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575 206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI 240 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~ 240 (454)
.+|+|||+|++|+-+|..|++.|.+|++++|.+..
T Consensus 11 ~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~ 45 (538)
T PRK06183 11 TDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTL 45 (538)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 57999999999999999999999999999988643
No 433
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.55 E-value=0.0063 Score=60.39 Aligned_cols=32 Identities=22% Similarity=0.389 Sum_probs=29.7
Q ss_pred CeEEEEcCCCCHHHHHHHHhhh---cCeEEEeccc
Q 044575 206 EVVVVVGNSLSGQDISMELVEV---AKEVHLSAKS 237 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~---~~~V~l~~r~ 237 (454)
-+|+|||+|++|.-+|..|++. |.+|++++|.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 4699999999999999999998 9999999994
No 434
>PLN02661 Putative thiazole synthesis
Probab=96.55 E-value=0.0085 Score=57.52 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=35.1
Q ss_pred CCCCCCCCCCeEEEEcCCCCHHHHHHHHhhh-cCeEEEecccCCc
Q 044575 197 YRVPEPFRNEVVVVVGNSLSGQDISMELVEV-AKEVHLSAKSLNI 240 (454)
Q Consensus 197 ~~~~~~~~~k~vvVVG~G~sg~e~A~~l~~~-~~~V~l~~r~~~~ 240 (454)
+.+..+...-.|+|||+|.+|+=.|..+++. +.+|+++++....
T Consensus 84 ~~~l~~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~ 128 (357)
T PLN02661 84 MTDMITYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSP 128 (357)
T ss_pred hhhhhhcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccc
Confidence 3334444556899999999999999999975 7899999987643
No 435
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.53 E-value=0.0021 Score=66.53 Aligned_cols=33 Identities=33% Similarity=0.523 Sum_probs=30.6
Q ss_pred cEEEECcChHHHHHHHHHHHcC-CcEEEEeeCCC
Q 044575 14 NVCVIGAGPSGLVAARELRKEG-HRVVVLEQNHD 46 (454)
Q Consensus 14 ~VvIIGaG~aGl~aA~~l~~~g-~~v~vie~~~~ 46 (454)
|+||||||.||+.+|.+|++.+ .+|+|+|+.+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 7999999999999999999988 69999999763
No 436
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=96.50 E-value=0.0072 Score=62.23 Aligned_cols=31 Identities=16% Similarity=0.306 Sum_probs=29.0
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCeEEEeccc
Q 044575 207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKS 237 (454)
Q Consensus 207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~ 237 (454)
.|+|||+|.+|+++|..+++.|.+|.++.+.
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~ 32 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLN 32 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEecc
Confidence 4899999999999999999999999999875
No 437
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.50 E-value=0.079 Score=55.33 Aligned_cols=34 Identities=35% Similarity=0.557 Sum_probs=29.8
Q ss_pred CCcEEEECcChHHHHHHHHHHHcC-CcEEEEeeCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEG-HRVVVLEQNH 45 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g-~~v~vie~~~ 45 (454)
.++|+|||+|..|+.+|..+.+.+ .+|+++.+.+
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~ 301 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRT 301 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 578999999999999999998888 5799998864
No 438
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.47 E-value=0.0056 Score=59.72 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=28.2
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCeEEEeccc
Q 044575 207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKS 237 (454)
Q Consensus 207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~ 237 (454)
.|+|||||..|+|.|.+.++.|.+.+|+..+
T Consensus 30 dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 30 DVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred cEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 6999999999999999999999998887654
No 439
>PLN02785 Protein HOTHEAD
Probab=96.47 E-value=0.0032 Score=65.51 Aligned_cols=35 Identities=26% Similarity=0.401 Sum_probs=31.9
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD 46 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~ 46 (454)
..+|++|||||.||+.+|.+|.+ +.+|+|+|+...
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 36999999999999999999999 689999999763
No 440
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.46 E-value=0.0036 Score=62.28 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=29.2
Q ss_pred CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575 206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL 238 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~ 238 (454)
-.|+|||||..|+|.|.+.++.|.++.|+.-..
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~ 37 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNL 37 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence 369999999999999999999999988876543
No 441
>PRK11445 putative oxidoreductase; Provisional
Probab=96.45 E-value=0.0084 Score=58.57 Aligned_cols=31 Identities=19% Similarity=0.176 Sum_probs=29.1
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575 207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSL 238 (454)
Q Consensus 207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~ 238 (454)
.|+|||+|++|.-+|..|++. .+|++++|.+
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~ 33 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKH 33 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCC
Confidence 599999999999999999998 9999999876
No 442
>PRK10015 oxidoreductase; Provisional
Probab=96.43 E-value=0.007 Score=60.80 Aligned_cols=34 Identities=15% Similarity=0.266 Sum_probs=31.2
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575 207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI 240 (454)
Q Consensus 207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~ 240 (454)
.|+|||+|++|.=+|..|++.|.+|.+++|.+.+
T Consensus 7 DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~ 40 (429)
T PRK10015 7 DAIVVGAGVAGSVAALVMARAGLDVLVIERGDSA 40 (429)
T ss_pred CEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 6999999999999999999999999999987543
No 443
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.40 E-value=0.16 Score=51.83 Aligned_cols=36 Identities=28% Similarity=0.357 Sum_probs=30.8
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCC-cEEEEeeCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGH-RVVVLEQNHD 46 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~-~v~vie~~~~ 46 (454)
..++|+|||||..|+-+|..+.+.|. +|+++|..+.
T Consensus 282 ~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~ 318 (485)
T TIGR01317 282 KGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK 318 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 35789999999999999998888875 7999998653
No 444
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=96.36 E-value=0.011 Score=58.90 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=32.3
Q ss_pred CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575 206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI 240 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~ 240 (454)
-.|+|||+|++|.-+|..|++.|.+|.++++...+
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~ 38 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEP 38 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 36999999999999999999999999999997765
No 445
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=96.36 E-value=0.0052 Score=55.76 Aligned_cols=34 Identities=24% Similarity=0.429 Sum_probs=31.3
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575 207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI 240 (454)
Q Consensus 207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~ 240 (454)
+|+|||+|..|+-.|..|...|.+|++++++...
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~Gv 36 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGV 36 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCc
Confidence 6999999999999999999999999999987654
No 446
>PRK07538 hypothetical protein; Provisional
Probab=96.35 E-value=0.0091 Score=59.73 Aligned_cols=34 Identities=18% Similarity=0.346 Sum_probs=31.4
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575 207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI 240 (454)
Q Consensus 207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~ 240 (454)
+|+|||||+.|+=+|..|++.|.+|+++++.+.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 6999999999999999999999999999987653
No 447
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=96.27 E-value=0.0036 Score=62.87 Aligned_cols=34 Identities=26% Similarity=0.274 Sum_probs=28.1
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575 207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI 240 (454)
Q Consensus 207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~ 240 (454)
.|||||||++|+-.|..+++.|.+|.|+++.+.+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~l 34 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFL 34 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSS
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccC
Confidence 4899999999999999999999999999998876
No 448
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=96.24 E-value=0.015 Score=57.82 Aligned_cols=34 Identities=12% Similarity=0.118 Sum_probs=31.7
Q ss_pred CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575 206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN 239 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~ 239 (454)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+.
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 4799999999999999999999999999998864
No 449
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.23 E-value=0.0096 Score=50.68 Aligned_cols=72 Identities=18% Similarity=0.219 Sum_probs=48.0
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchhhhccCCCeEEcCceeEEecCCcEEEeCCCEEeece
Q 044575 202 PFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADT 281 (454)
Q Consensus 202 ~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~l~~~~~i~~~~~v~~v~~~~~v~~~dG~~i~~D~ 281 (454)
+..|++|+|||||..|...+..|.+.+.+|+++. +...+.+.+ ...+ . .... .+..+..-.+|+
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs--p~~~~~l~~----l~~i------~-~~~~---~~~~~dl~~a~l 73 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS--PEICKEMKE----LPYI------T-WKQK---TFSNDDIKDAHL 73 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc--CccCHHHHh----ccCc------E-EEec---ccChhcCCCceE
Confidence 3478999999999999999999999999999994 333333322 1111 1 1111 122222334999
Q ss_pred EEEccCcc
Q 044575 282 ILYCTGYS 289 (454)
Q Consensus 282 vI~atG~~ 289 (454)
||.||+-.
T Consensus 74 ViaaT~d~ 81 (157)
T PRK06719 74 IYAATNQH 81 (157)
T ss_pred EEECCCCH
Confidence 99999865
No 450
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=96.22 E-value=0.011 Score=61.52 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=32.1
Q ss_pred CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575 206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI 240 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~ 240 (454)
.+|+|||+|++|+-+|..|++.|.+|+++++.+..
T Consensus 24 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~ 58 (547)
T PRK08132 24 HPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL 58 (547)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 57999999999999999999999999999988643
No 451
>PRK06185 hypothetical protein; Provisional
Probab=96.21 E-value=0.012 Score=58.84 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=31.3
Q ss_pred CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575 206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN 239 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~ 239 (454)
.+|+|||||++|+-+|..|++.|.+|+++++.+.
T Consensus 7 ~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 7 TDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 5799999999999999999999999999998753
No 452
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=96.20 E-value=0.015 Score=57.67 Aligned_cols=31 Identities=26% Similarity=0.314 Sum_probs=29.6
Q ss_pred eEEEEcCCCCHHHHHHHHhhhcCeEEEeccc
Q 044575 207 VVVVVGNSLSGQDISMELVEVAKEVHLSAKS 237 (454)
Q Consensus 207 ~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~ 237 (454)
.|+|||+|++|.=+|..|++.|.+|.++++.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 5899999999999999999999999999987
No 453
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=96.15 E-value=0.0059 Score=43.87 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=28.9
Q ss_pred EEcCCCCHHHHHHHHhhhcCeEEEecccCCcC
Q 044575 210 VVGNSLSGQDISMELVEVAKEVHLSAKSLNIS 241 (454)
Q Consensus 210 VVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~ 241 (454)
|||+|.+|+-.|..|++.+.+|+++++.+.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence 89999999999999999999999999988763
No 454
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=96.15 E-value=0.013 Score=59.24 Aligned_cols=33 Identities=24% Similarity=0.207 Sum_probs=27.0
Q ss_pred eEEEEcCCCCHHHHHHHHhhhc---CeEEEecccCC
Q 044575 207 VVVVVGNSLSGQDISMELVEVA---KEVHLSAKSLN 239 (454)
Q Consensus 207 ~vvVVG~G~sg~e~A~~l~~~~---~~V~l~~r~~~ 239 (454)
+|+|||||..|.-.|..|++.+ .+|+++++...
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~ 36 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDI 36 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCC
Confidence 5999999999999999999988 78999998754
No 455
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=96.14 E-value=0.01 Score=58.99 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=29.0
Q ss_pred EEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575 209 VVVGNSLSGQDISMELVEVAKEVHLSAKSLNI 240 (454)
Q Consensus 209 vVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~ 240 (454)
+|||+|++|+=+|..+++.|.+|+++++.+.+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~ 32 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKI 32 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccc
Confidence 58999999999999999999999999987654
No 456
>PRK06996 hypothetical protein; Provisional
Probab=96.10 E-value=0.014 Score=58.04 Aligned_cols=33 Identities=15% Similarity=0.099 Sum_probs=29.4
Q ss_pred CeEEEEcCCCCHHHHHHHHhhhc----CeEEEecccC
Q 044575 206 EVVVVVGNSLSGQDISMELVEVA----KEVHLSAKSL 238 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~~----~~V~l~~r~~ 238 (454)
..|+|||||+.|.-+|..|++.| .+|+++++.+
T Consensus 12 ~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 12 FDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 47999999999999999999886 4799999864
No 457
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=96.06 E-value=0.0047 Score=57.12 Aligned_cols=38 Identities=34% Similarity=0.580 Sum_probs=33.8
Q ss_pred CCCcEEEECcChHHHHHHHHHHHc--CCcEEEEeeCCCCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKE--GHRVVVLEQNHDVG 48 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~--g~~v~vie~~~~~G 48 (454)
.++|+||||||..|++.|++|.-+ +.+|.|+|+...++
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 469999999999999999999765 88999999987664
No 458
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=95.98 E-value=0.0091 Score=59.29 Aligned_cols=44 Identities=25% Similarity=0.590 Sum_probs=34.5
Q ss_pred ccCCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575 9 CAQSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHDVGGQWL 52 (454)
Q Consensus 9 ~~~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~ 52 (454)
|.+.+||+|+|.|..-...|..|++.|.+|+.+|+++..||.|.
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~a 44 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWA 44 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchh
Confidence 45679999999999999999999999999999999999999986
No 459
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=95.97 E-value=0.012 Score=57.72 Aligned_cols=36 Identities=28% Similarity=0.478 Sum_probs=34.4
Q ss_pred CCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575 205 NEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI 240 (454)
Q Consensus 205 ~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~ 240 (454)
.++++|||||.+|+..|.+|++.|-+|+|+++.+.+
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsi 159 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSI 159 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 479999999999999999999999999999999887
No 460
>PRK06126 hypothetical protein; Provisional
Probab=95.92 E-value=0.02 Score=59.57 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=32.1
Q ss_pred CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575 206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI 240 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~ 240 (454)
.+|+|||||++|+-+|..|++.|.+|++++|.+..
T Consensus 8 ~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~ 42 (545)
T PRK06126 8 TPVLIVGGGPVGLALALDLGRRGVDSILVERKDGT 42 (545)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 57999999999999999999999999999987643
No 461
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=95.92 E-value=0.011 Score=63.25 Aligned_cols=40 Identities=15% Similarity=0.201 Sum_probs=36.8
Q ss_pred CCCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575 201 EPFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI 240 (454)
Q Consensus 201 ~~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~ 240 (454)
..-.|++|.|||+|++|+-.|..|.+.|..|++.+|+++.
T Consensus 1781 ~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ 1820 (2142)
T KOG0399|consen 1781 AFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRV 1820 (2142)
T ss_pred ccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCc
Confidence 3346899999999999999999999999999999999987
No 462
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.88 E-value=0.024 Score=55.98 Aligned_cols=35 Identities=17% Similarity=0.267 Sum_probs=29.5
Q ss_pred CeEEEEcCCCCHHHHHHHHhhhc---CeEEEecccCCc
Q 044575 206 EVVVVVGNSLSGQDISMELVEVA---KEVHLSAKSLNI 240 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~~---~~V~l~~r~~~~ 240 (454)
++|+|||+|+||+.+|.+|.+.. ..|.++++.+.+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~ 39 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF 39 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence 57999999999999999999752 238999888776
No 463
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.87 E-value=0.0095 Score=50.83 Aligned_cols=32 Identities=34% Similarity=0.542 Sum_probs=30.3
Q ss_pred cEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNH 45 (454)
Q Consensus 14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~ 45 (454)
+|+|||||..|.++|..|+++|++|+++.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999999875
No 464
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=95.83 E-value=0.022 Score=60.63 Aligned_cols=33 Identities=15% Similarity=0.322 Sum_probs=30.9
Q ss_pred CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575 206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL 238 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~ 238 (454)
.+|+|||||.+|+-+|..|++.|.+|+++++..
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 479999999999999999999999999999864
No 465
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=95.82 E-value=0.029 Score=55.48 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=31.9
Q ss_pred CeEEEEcCCCCHHHHHHHHhhhc--CeEEEecccCCc
Q 044575 206 EVVVVVGNSLSGQDISMELVEVA--KEVHLSAKSLNI 240 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~~--~~V~l~~r~~~~ 240 (454)
-.|+|||||.+|+-+|.+|++.. .+|+++++...+
T Consensus 4 ~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~ 40 (429)
T COG0579 4 YDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGV 40 (429)
T ss_pred eeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcc
Confidence 36999999999999999999998 899999997766
No 466
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=95.81 E-value=0.023 Score=59.64 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=32.1
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575 204 RNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL 238 (454)
Q Consensus 204 ~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~ 238 (454)
+..+|+|||||..|+=+|..|++.|.+|++++|.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 34689999999999999999999999999999864
No 467
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.79 E-value=0.0086 Score=47.04 Aligned_cols=34 Identities=35% Similarity=0.562 Sum_probs=31.0
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQN 44 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~ 44 (454)
+.++|+|||||..|..-+..|.+.|.+|+++.+.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 4578999999999999999999999999999986
No 468
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=95.78 E-value=0.026 Score=56.96 Aligned_cols=31 Identities=26% Similarity=0.247 Sum_probs=28.7
Q ss_pred eEEEEcCCCCHHHHHHHHhh----hcCeEEEeccc
Q 044575 207 VVVVVGNSLSGQDISMELVE----VAKEVHLSAKS 237 (454)
Q Consensus 207 ~vvVVG~G~sg~e~A~~l~~----~~~~V~l~~r~ 237 (454)
.|+|||||++|+-+|..|++ .|.+|+++++.
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~ 36 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAV 36 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCC
Confidence 48999999999999999998 79999999983
No 469
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.21 Score=47.12 Aligned_cols=35 Identities=40% Similarity=0.471 Sum_probs=30.7
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH 45 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~ 45 (454)
+.+||+|||||-+|+.||..|+---..|+++|-.+
T Consensus 353 ~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~ 387 (520)
T COG3634 353 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP 387 (520)
T ss_pred CCceEEEECCCcchHHHHHhHHhhhheeeeeecch
Confidence 46899999999999999999987666899999754
No 470
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=95.77 E-value=0.0046 Score=56.46 Aligned_cols=42 Identities=24% Similarity=0.443 Sum_probs=35.7
Q ss_pred hccCCCcEEEECcChHHHHHHHHHHHcC------CcEEEEeeCCCCCc
Q 044575 8 QCAQSKNVCVIGAGPSGLVAARELRKEG------HRVVVLEQNHDVGG 49 (454)
Q Consensus 8 ~~~~~~~VvIIGaG~aGl~aA~~l~~~g------~~v~vie~~~~~GG 49 (454)
+|...++|+|+|||..|+++|..|.+++ ..|++||...-.||
T Consensus 6 r~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g 53 (380)
T KOG2852|consen 6 REGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG 53 (380)
T ss_pred ccCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence 3455689999999999999999999986 78999998765554
No 471
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=95.66 E-value=0.039 Score=54.73 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=31.8
Q ss_pred CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575 206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN 239 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~ 239 (454)
.+|+|||+|+.|+=+|..|++.|.+|+++++.+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 5799999999999999999999999999999874
No 472
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.60 E-value=0.02 Score=51.11 Aligned_cols=35 Identities=31% Similarity=0.480 Sum_probs=31.9
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH 45 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~ 45 (454)
+.++|+|||||..|...++.|.+.|.+|+|++.+.
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 35799999999999999999999999999998753
No 473
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.56 E-value=0.023 Score=48.42 Aligned_cols=33 Identities=30% Similarity=0.432 Sum_probs=30.8
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEee
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQ 43 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~ 43 (454)
+.++|+|||||..|..-|+.|.+.|.+|+||++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 568999999999999999999999999999964
No 474
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.52 E-value=0.011 Score=46.48 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=31.8
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccC
Q 044575 203 FRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSL 238 (454)
Q Consensus 203 ~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~ 238 (454)
.++++|+|||+|..|..-+..|.+.|.+|+++.+..
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 468999999999999999999999999999998764
No 475
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=95.44 E-value=0.038 Score=53.36 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=31.9
Q ss_pred CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575 206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI 240 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~ 240 (454)
.+|+|||||..|+-.|..|++.|-+|.+.+++..+
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 57999999999999999999999999999886655
No 476
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=95.35 E-value=0.015 Score=57.44 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=31.5
Q ss_pred CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575 206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI 240 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~ 240 (454)
++|+|||||..|+++|..|++.|.+|+++++++..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 57999999999999999999999999999965443
No 477
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=95.33 E-value=0.02 Score=58.44 Aligned_cols=38 Identities=32% Similarity=0.462 Sum_probs=33.9
Q ss_pred cCCCcEEEECcChHHHHHHHHHHHc-CCcEEEEeeCCCC
Q 044575 10 AQSKNVCVIGAGPSGLVAARELRKE-GHRVVVLEQNHDV 47 (454)
Q Consensus 10 ~~~~~VvIIGaG~aGl~aA~~l~~~-g~~v~vie~~~~~ 47 (454)
...||.+|||||.||...|.+|.+. .++|+|+|+....
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 4579999999999999999999987 6899999997654
No 478
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.32 E-value=0.021 Score=51.81 Aligned_cols=33 Identities=42% Similarity=0.769 Sum_probs=31.1
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH 45 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~ 45 (454)
++++|||+|.-|.+.|+.|.+.|++|+++|+.+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 369999999999999999999999999999976
No 479
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.30 E-value=0.019 Score=50.39 Aligned_cols=32 Identities=34% Similarity=0.598 Sum_probs=27.0
Q ss_pred cEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNH 45 (454)
Q Consensus 14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~ 45 (454)
+|+|||.|..|+.+|..|++.|++|+.+|.++
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 69999999999999999999999999999865
No 480
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=95.23 E-value=0.018 Score=57.45 Aligned_cols=31 Identities=45% Similarity=0.533 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 044575 22 PSGLVAARELRKEGHRVVVLEQNHDVGGQWL 52 (454)
Q Consensus 22 ~aGl~aA~~l~~~g~~v~vie~~~~~GG~w~ 52 (454)
.|||+||..|++.|++|+|+|+++++||...
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~ 31 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIR 31 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceE
Confidence 4899999999999999999999999999866
No 481
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=95.21 E-value=0.34 Score=48.35 Aligned_cols=92 Identities=20% Similarity=0.042 Sum_probs=62.3
Q ss_pred EEECcChHHHHHH-HHHH----HcCCcEEEEeeCCCCCcccccCCCCCCCCccccccccceecCCccccccCCCCCCCCC
Q 044575 16 CVIGAGPSGLVAA-RELR----KEGHRVVVLEQNHDVGGQWLYDPNTDQTEVHSSVYASLRLTSPREIMGYTDFPFVLKK 90 (454)
Q Consensus 16 vIIGaG~aGl~aA-~~l~----~~g~~v~vie~~~~~GG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (454)
+|++-|.-|+..+ ..+. +.|.+|++++..+..
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~pps------------------------------------------- 255 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPS------------------------------------------- 255 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCC-------------------------------------------
Confidence 5677788888777 3332 359999999875421
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCccEEeCeEEEEEEEcCCCccccCCcCCcEEEEEeecCCCeEEEEEeCEEEEcc
Q 044575 91 GRDVRRFPGHKELWLYLKDFCQRFGLREMIRFNTRVEYVGMLDCGELIIGNDLIKWVVKSKEKKADKVVEEVFDAVVVAT 170 (454)
Q Consensus 91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~vViAt 170 (454)
.+..++.+.+.+..++.++. +..+++|.+++..+. .-.+.... ++....+.+|.||+||
T Consensus 256 -------lpG~rL~~aL~~~l~~~Gv~--I~~g~~V~~v~~~~~----------~V~~v~~~--~g~~~~i~AD~VVLAt 314 (422)
T PRK05329 256 -------VPGLRLQNALRRAFERLGGR--IMPGDEVLGAEFEGG----------RVTAVWTR--NHGDIPLRARHFVLAT 314 (422)
T ss_pred -------CchHHHHHHHHHHHHhCCCE--EEeCCEEEEEEEeCC----------EEEEEEee--CCceEEEECCEEEEeC
Confidence 12246777777777777877 899999999986642 22222221 1224468999999999
Q ss_pred C
Q 044575 171 G 171 (454)
Q Consensus 171 G 171 (454)
|
T Consensus 315 G 315 (422)
T PRK05329 315 G 315 (422)
T ss_pred C
Confidence 9
No 482
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.20 E-value=0.021 Score=57.90 Aligned_cols=82 Identities=16% Similarity=0.205 Sum_probs=52.4
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc-CccchhhhccCCCeEEcCceeEEecCCcEEEeCCCEEeece
Q 044575 203 FRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI-SEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADT 281 (454)
Q Consensus 203 ~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~-~~~~~~~l~~~~~i~~~~~v~~v~~~~~v~~~dG~~i~~D~ 281 (454)
.++|+|+|+|+|.+|..+|..|++.|.+|+++.+.... .....+.+.+. .+.-+..+. .+...-.+|+
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~-------~~~~~~~~~----~~~~~~~~d~ 71 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGEL-------GIELVLGEY----PEEFLEGVDL 71 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc-------CCEEEeCCc----chhHhhcCCE
Confidence 35799999999999999999999999999999886421 11111111111 111111110 0111124899
Q ss_pred EEEccCcccCCcCC
Q 044575 282 ILYCTGYSYSFPFL 295 (454)
Q Consensus 282 vI~atG~~~~~~~l 295 (454)
||.++|..++.|.+
T Consensus 72 vv~~~g~~~~~~~~ 85 (450)
T PRK14106 72 VVVSPGVPLDSPPV 85 (450)
T ss_pred EEECCCCCCCCHHH
Confidence 99999998887754
No 483
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.18 E-value=0.022 Score=57.81 Aligned_cols=33 Identities=45% Similarity=0.648 Sum_probs=30.8
Q ss_pred cEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD 46 (454)
Q Consensus 14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~ 46 (454)
+|+|||+|++|+++|+.|.+.|++|+++|++..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 599999999999999999999999999998753
No 484
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=95.15 E-value=0.13 Score=51.92 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=31.2
Q ss_pred CeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCC
Q 044575 206 EVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLN 239 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~ 239 (454)
-.|+|||||+.|.=+|..|++.|.+|.++++...
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~ 73 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGGIETFLIERKLD 73 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 4799999999999999999999999999998753
No 485
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=95.07 E-value=0.043 Score=45.42 Aligned_cols=35 Identities=29% Similarity=0.464 Sum_probs=31.9
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCc-EEEEeeCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHR-VVVLEQNH 45 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~-v~vie~~~ 45 (454)
+.++++|||+|-+|-+++.+|.+.|.+ |+|+.|+.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 468999999999999999999999986 99999864
No 486
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.02 E-value=0.036 Score=49.35 Aligned_cols=34 Identities=29% Similarity=0.413 Sum_probs=31.4
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQN 44 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~ 44 (454)
+.++|+|||||-.|...|+.|.+.|.+|+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 4689999999999999999999999999999864
No 487
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=94.97 E-value=0.03 Score=49.97 Aligned_cols=74 Identities=16% Similarity=0.182 Sum_probs=51.4
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchhhhccCCCeEEcCceeEEecCCcEEEeCCCEEeeceE
Q 044575 203 FRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTI 282 (454)
Q Consensus 203 ~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~l~~~~~i~~~~~v~~v~~~~~v~~~dG~~i~~D~v 282 (454)
+.+++|+|||||..|..=|..|.+.|.+|+++.... .+.+..+..+.. +..+. +. +.......++.|
T Consensus 10 l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~--~~el~~~~~~~~-------i~~~~-~~---~~~~~~~~~~lv 76 (210)
T COG1648 10 LEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEF--EPELKALIEEGK-------IKWIE-RE---FDAEDLDDAFLV 76 (210)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc--cHHHHHHHHhcC-------cchhh-cc---cChhhhcCceEE
Confidence 468999999999999999999999999999997665 555555443322 22232 11 111222339999
Q ss_pred EEccCcc
Q 044575 283 LYCTGYS 289 (454)
Q Consensus 283 I~atG~~ 289 (454)
|.||+-.
T Consensus 77 iaAt~d~ 83 (210)
T COG1648 77 IAATDDE 83 (210)
T ss_pred EEeCCCH
Confidence 9999864
No 488
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=94.93 E-value=0.11 Score=53.87 Aligned_cols=88 Identities=22% Similarity=0.222 Sum_probs=63.2
Q ss_pred CeEEEEcCCCCHHHHHHHHhhhc---CeEEEecccCCcC---ccchhhhc------------------cCCCeEEcCcee
Q 044575 206 EVVVVVGNSLSGQDISMELVEVA---KEVHLSAKSLNIS---EGLSKVIS------------------KHNNLHLHPQID 261 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~~---~~V~l~~r~~~~~---~~~~~~l~------------------~~~~i~~~~~v~ 261 (454)
.+++|||.|..|.-...++.+.. -.||++...++.. ..+++.+. ..+.++.+.++.
T Consensus 4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v~ 83 (793)
T COG1251 4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKVI 83 (793)
T ss_pred eeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCeeE
Confidence 67999999999999999988843 3588877665541 11111111 123577788888
Q ss_pred EEecCC-cEEEeCCCEEeeceEEEccCcccCCc
Q 044575 262 CLREDG-RVTFVDGCWVTADTILYCTGYSYSFP 293 (454)
Q Consensus 262 ~v~~~~-~v~~~dG~~i~~D~vI~atG~~~~~~ 293 (454)
.+..+. .|+.++|.++.+|-+|+|||..|..+
T Consensus 84 ~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~ 116 (793)
T COG1251 84 QIDRANKVVTTDAGRTVSYDKLIIATGSYPFIL 116 (793)
T ss_pred EeccCcceEEccCCcEeecceeEEecCcccccc
Confidence 887665 56666788899999999999986644
No 489
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.82 E-value=0.04 Score=48.15 Aligned_cols=32 Identities=31% Similarity=0.457 Sum_probs=28.2
Q ss_pred cEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575 14 NVCVIGAGPSGLVAARELRKEGHRVVVLEQNH 45 (454)
Q Consensus 14 ~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~ 45 (454)
+|.|||||.-|...|..++..|++|+++|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 58999999999999999999999999999865
No 490
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=94.80 E-value=0.032 Score=53.74 Aligned_cols=33 Identities=30% Similarity=0.634 Sum_probs=29.4
Q ss_pred CCcEEEECcChHHHHHHHHHHHc----CCcEEEEeeC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKE----GHRVVVLEQN 44 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~----g~~v~vie~~ 44 (454)
.+||+|+||||.|++.|..|... ..+|.++|..
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 68999999999999999999864 4699999987
No 491
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.72 E-value=0.039 Score=52.32 Aligned_cols=34 Identities=32% Similarity=0.304 Sum_probs=31.4
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH 45 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~ 45 (454)
.++|+|||+|.-|...|..|++.|++|+++|+++
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 3679999999999999999999999999999865
No 492
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=94.72 E-value=0.027 Score=56.54 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=35.4
Q ss_pred CCCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575 202 PFRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI 240 (454)
Q Consensus 202 ~~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~ 240 (454)
...+++|+|||+|+-|...|..|++.|..|++..+.+..
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~ 158 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALD 158 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCC
Confidence 345699999999999999999999999999999988765
No 493
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=94.70 E-value=0.082 Score=55.86 Aligned_cols=35 Identities=14% Similarity=0.214 Sum_probs=31.6
Q ss_pred CeEEEEcCCCCHHHHHHHHhhh-cCeEEEecccCCc
Q 044575 206 EVVVVVGNSLSGQDISMELVEV-AKEVHLSAKSLNI 240 (454)
Q Consensus 206 k~vvVVG~G~sg~e~A~~l~~~-~~~V~l~~r~~~~ 240 (454)
-.|+|||+|++|+-+|..|++. |.+|.++++.+..
T Consensus 33 ~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~ 68 (634)
T PRK08294 33 VDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGR 68 (634)
T ss_pred CCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCC
Confidence 4799999999999999999995 9999999987654
No 494
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=94.65 E-value=0.18 Score=47.54 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=32.3
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCc
Q 044575 204 RNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNI 240 (454)
Q Consensus 204 ~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~ 240 (454)
....|+|||+|.-|+-.|.+|++.+.++.++++-+.+
T Consensus 6 ~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~p 42 (399)
T KOG2820|consen 6 KSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLP 42 (399)
T ss_pred cceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCC
Confidence 3467999999999999999999999999998876654
No 495
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.64 E-value=0.04 Score=49.18 Aligned_cols=79 Identities=16% Similarity=0.150 Sum_probs=52.0
Q ss_pred CCCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCccchhhhccCCCeEEcCceeEEecCCcEEEeCCCEEeeceE
Q 044575 203 FRNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISEGLSKVISKHNNLHLHPQIDCLREDGRVTFVDGCWVTADTI 282 (454)
Q Consensus 203 ~~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~~~~~~l~~~~~i~~~~~v~~v~~~~~v~~~dG~~i~~D~v 282 (454)
+.+++|+|||||.+|.--+..|.+.|.+|+++.... .+.+.++.. .. .|+-+..+ +..+..-.+|+|
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~--~~~l~~l~~-~~------~i~~~~~~----~~~~dl~~~~lV 73 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL--ESELTLLAE-QG------GITWLARC----FDADILEGAFLV 73 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC--CHHHHHHHH-cC------CEEEEeCC----CCHHHhCCcEEE
Confidence 468999999999999999999999999999997543 344433322 11 22222111 111112239999
Q ss_pred EEccCcc-cCCcC
Q 044575 283 LYCTGYS-YSFPF 294 (454)
Q Consensus 283 I~atG~~-~~~~~ 294 (454)
|.|||-. .|.+.
T Consensus 74 i~at~d~~ln~~i 86 (205)
T TIGR01470 74 IAATDDEELNRRV 86 (205)
T ss_pred EECCCCHHHHHHH
Confidence 9999997 55444
No 496
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.64 E-value=0.1 Score=49.03 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=32.6
Q ss_pred CCCCCeEEEEcCCC-CHHHHHHHHhhhcCeEEEeccc
Q 044575 202 PFRNEVVVVVGNSL-SGQDISMELVEVAKEVHLSAKS 237 (454)
Q Consensus 202 ~~~~k~vvVVG~G~-sg~e~A~~l~~~~~~V~l~~r~ 237 (454)
.++||+|+|||.|. .|.-+|..|.+.+..|++++|.
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~ 192 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR 192 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 56899999999998 9999999999998899999873
No 497
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=94.55 E-value=0.041 Score=51.46 Aligned_cols=34 Identities=35% Similarity=0.471 Sum_probs=31.5
Q ss_pred CcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575 13 KNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD 46 (454)
Q Consensus 13 ~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~ 46 (454)
..|-|||||.||-.||.++++.|..|.++|-++.
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 4599999999999999999999999999998764
No 498
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.55 E-value=0.056 Score=46.63 Aligned_cols=35 Identities=34% Similarity=0.382 Sum_probs=30.0
Q ss_pred CCCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCC
Q 044575 11 QSKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNH 45 (454)
Q Consensus 11 ~~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~ 45 (454)
...+|+|+|+|.+|..||..|...|.+++++|...
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 35789999999999999999999999999999754
No 499
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.50 E-value=0.056 Score=55.01 Aligned_cols=39 Identities=18% Similarity=0.330 Sum_probs=35.3
Q ss_pred CCCeEEEEcCCCCHHHHHHHHhhhcCeEEEecccCCcCc
Q 044575 204 RNEVVVVVGNSLSGQDISMELVEVAKEVHLSAKSLNISE 242 (454)
Q Consensus 204 ~~k~vvVVG~G~sg~e~A~~l~~~~~~V~l~~r~~~~~~ 242 (454)
+.++|+|||+|.+|+-.|..|.+.|-+|++++.++++.-
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG 52 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence 457899999999999999999999999999999887643
No 500
>PRK04148 hypothetical protein; Provisional
Probab=94.48 E-value=0.042 Score=44.98 Aligned_cols=34 Identities=26% Similarity=0.527 Sum_probs=30.6
Q ss_pred CCcEEEECcChHHHHHHHHHHHcCCcEEEEeeCCC
Q 044575 12 SKNVCVIGAGPSGLVAARELRKEGHRVVVLEQNHD 46 (454)
Q Consensus 12 ~~~VvIIGaG~aGl~aA~~l~~~g~~v~vie~~~~ 46 (454)
..+|++||.| .|...|..|.+.|++|+.+|.++.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 3679999999 899899999999999999998764
Done!