Your job contains 1 sequence.
>044576
MLFFYFFLSKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKD
GDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRDRNIFIILVPNKALLQ
KAQEPPKKKDKQVVDEVSTGV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 044576
(141 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2131929 - symbol:AT4G30690 species:3702 "Arabi... 467 2.4e-44 1
TAIR|locus:2061380 - symbol:AT2G24060 species:3702 "Arabi... 457 2.8e-43 1
TIGR_CMR|CHY_1578 - symbol:CHY_1578 "translation initiati... 170 7.1e-13 1
TIGR_CMR|NSE_0293 - symbol:NSE_0293 "translation initiati... 164 3.1e-12 1
TIGR_CMR|SPO_2638 - symbol:SPO_2638 "translation initiati... 163 3.9e-12 1
UNIPROTKB|Q0C535 - symbol:infC "Translation initiation fa... 155 2.8e-11 1
TIGR_CMR|SO_2300 - symbol:SO_2300 "translation initiation... 153 4.5e-11 1
TIGR_CMR|BA_4819 - symbol:BA_4819 "translation initiation... 151 7.4e-11 1
UNIPROTKB|P0A707 - symbol:infC "protein chain initiation ... 148 1.5e-10 1
TIGR_CMR|ECH_0007 - symbol:ECH_0007 "translation initiati... 146 2.5e-10 1
TIGR_CMR|CBU_1325 - symbol:CBU_1325 "translation initiati... 143 5.2e-10 1
TIGR_CMR|CPS_2908 - symbol:CPS_2908 "translation initiati... 143 5.2e-10 1
TIGR_CMR|APH_1263 - symbol:APH_1263 "translation initiati... 137 2.2e-09 1
UNIPROTKB|P65135 - symbol:infC "Translation initiation fa... 132 7.6e-09 1
UNIPROTKB|P65144 - symbol:infC "Translation initiation fa... 127 2.6e-08 1
TIGR_CMR|DET_0752 - symbol:DET_0752 "translation initiati... 125 4.2e-08 1
TIGR_CMR|CJE_0200 - symbol:CJE_0200 "translation initiati... 120 1.4e-07 1
TIGR_CMR|GSU_1516 - symbol:GSU_1516 "translation initiati... 115 4.8e-07 1
>TAIR|locus:2131929 [details] [associations]
symbol:AT4G30690 species:3702 "Arabidopsis thaliana"
[GO:0003743 "translation initiation factor activity"
evidence=IEA;ISS] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0006413
"translational initiation" evidence=IEA;ISS] [GO:0005618 "cell
wall" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
HAMAP:MF_00080 InterPro:IPR001288 InterPro:IPR019813
InterPro:IPR019814 InterPro:IPR019815 Pfam:PF00707 Pfam:PF05198
PROSITE:PS00938 GO:GO:0005618 GO:GO:0009507 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003743 KO:K02520 Gene3D:3.10.20.80
PANTHER:PTHR10938 SUPFAM:SSF54364 SUPFAM:SSF55200 eggNOG:COG0290
TIGRFAMs:TIGR00168 HSSP:P02999 HOGENOM:HOG000030813
ProtClustDB:CLSN2720900 EMBL:AY042848 EMBL:AY072500 IPI:IPI00517371
RefSeq:NP_567851.1 UniGene:At.3675 UniGene:At.74203
ProteinModelPortal:Q94B52 SMR:Q94B52 STRING:Q94B52 PaxDb:Q94B52
PRIDE:Q94B52 EnsemblPlants:AT4G30690.1 GeneID:829192
KEGG:ath:AT4G30690 TAIR:At4g30690 InParanoid:Q94B52 OMA:LRRFQND
PhylomeDB:Q94B52 Genevestigator:Q94B52 Uniprot:Q94B52
Length = 281
Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 92/131 (70%), Positives = 108/131 (82%)
Query: 9 SKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
SKYRYE + RMDLKELKMGYNIDQHDYSVR++AARKFL+DGDKVKVIV
Sbjct: 143 SKYRYEQQKRKKEQQKKTT--RMDLKELKMGYNIDQHDYSVRMRAARKFLQDGDKVKVIV 200
Query: 69 NLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRDRNIFIILVPNKALLQKAQEPP-K 127
N+KGRENEFRNIAIEL+RRFQ ++GEL +EE+KNFRDRN+FI+LVPNK +++K QEPP K
Sbjct: 201 NMKGRENEFRNIAIELLRRFQTEIGELGTEESKNFRDRNLFIVLVPNKEVIRKVQEPPPK 260
Query: 128 KKDKQVVDEVS 138
KK K D+VS
Sbjct: 261 KKKKPADDKVS 271
>TAIR|locus:2061380 [details] [associations]
symbol:AT2G24060 species:3702 "Arabidopsis thaliana"
[GO:0003743 "translation initiation factor activity"
evidence=IEA;ISS] [GO:0006413 "translational initiation"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
HAMAP:MF_00080 InterPro:IPR001288 InterPro:IPR019813
InterPro:IPR019814 InterPro:IPR019815 Pfam:PF00707 Pfam:PF05198
PROSITE:PS00938 GO:GO:0009507 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003743 EMBL:AC005170 KO:K02520
Gene3D:3.10.20.80 PANTHER:PTHR10938 SUPFAM:SSF54364 SUPFAM:SSF55200
eggNOG:COG0290 TIGRFAMs:TIGR00168 EMBL:AY072160 EMBL:AY096414
EMBL:AY088131 IPI:IPI00543613 PIR:B84632 RefSeq:NP_179984.1
UniGene:At.43835 HSSP:P02999 ProteinModelPortal:O82234 SMR:O82234
STRING:O82234 World-2DPAGE:0003:O82234 PaxDb:O82234 PRIDE:O82234
ProMEX:O82234 EnsemblPlants:AT2G24060.1 GeneID:816940
KEGG:ath:AT2G24060 TAIR:At2g24060 HOGENOM:HOG000030813
InParanoid:O82234 OMA:KEMIRKP PhylomeDB:O82234
ProtClustDB:CLSN2720900 ArrayExpress:O82234 Genevestigator:O82234
Uniprot:O82234
Length = 312
Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
Identities = 91/131 (69%), Positives = 108/131 (82%)
Query: 9 SKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
SKYRYE + RMDLKELKMGYNIDQHDYSVRL+AA+KFL+DGDKVKVIV
Sbjct: 147 SKYRYEQQKRKKDQQKKTT--RMDLKELKMGYNIDQHDYSVRLRAAQKFLQDGDKVKVIV 204
Query: 69 NLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRDRNIFIILVPNKALLQKAQEPP-K 127
++KGRENEFRNIAIEL+RRFQ ++GELA+EE+KNFRDRN+FIILVPNK +++K QEPP +
Sbjct: 205 SMKGRENEFRNIAIELLRRFQTEIGELATEESKNFRDRNMFIILVPNKEMIRKPQEPPTR 264
Query: 128 KKDKQVVDEVS 138
KK K +E S
Sbjct: 265 KKKKTAENEAS 275
>TIGR_CMR|CHY_1578 [details] [associations]
symbol:CHY_1578 "translation initiation factor IF-3"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003743 "translation initiation factor activity" evidence=ISS]
[GO:0006413 "translational initiation" evidence=ISS] HAMAP:MF_00080
InterPro:IPR001288 InterPro:IPR019813 InterPro:IPR019814
InterPro:IPR019815 Pfam:PF00707 Pfam:PF05198 PROSITE:PS00938
GO:GO:0005737 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003743
KO:K02520 Gene3D:3.10.20.80 PANTHER:PTHR10938 SUPFAM:SSF54364
SUPFAM:SSF55200 eggNOG:COG0290 TIGRFAMs:TIGR00168
HOGENOM:HOG000035157 OMA:APKAPIN RefSeq:YP_360407.1
ProteinModelPortal:Q3ABS7 SMR:Q3ABS7 STRING:Q3ABS7 GeneID:3727087
KEGG:chy:CHY_1578 PATRIC:21276281 ProtClustDB:CLSK2772240
BioCyc:CHYD246194:GJCN-1577-MONOMER Uniprot:Q3ABS7
Length = 169
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 38/106 (35%), Positives = 58/106 (54%)
Query: 10 KYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVN 69
KYRY+ +++KE+K+ I++HD+ V+L+ +FL+DGDKVKV V
Sbjct: 64 KYRYQQSKKEKEARKKQKI--INVKEIKIRPTIEEHDFQVKLRNVLRFLEDGDKVKVTVM 121
Query: 70 LKGRENEFRNIAIELIRRFQNDVGELASEENK-NFRDRNIFIILVP 114
+GRE IA EL+ + +VG +A E RN+ +IL P
Sbjct: 122 FRGRELSHPEIAYELLNKMAQEVGSIAVVERPAKLEGRNMIMILAP 167
>TIGR_CMR|NSE_0293 [details] [associations]
symbol:NSE_0293 "translation initiation factor IF-3"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] HAMAP:MF_00080
InterPro:IPR001288 InterPro:IPR019813 InterPro:IPR019814
InterPro:IPR019815 Pfam:PF00707 Pfam:PF05198 PROSITE:PS00938
GO:GO:0005737 GO:GO:0003743 EMBL:CP000237 GenomeReviews:CP000237_GR
KO:K02520 Gene3D:3.10.20.80 PANTHER:PTHR10938 SUPFAM:SSF54364
SUPFAM:SSF55200 eggNOG:COG0290 TIGRFAMs:TIGR00168
HOGENOM:HOG000035157 RefSeq:YP_506184.1 ProteinModelPortal:Q2GEB2
STRING:Q2GEB2 GeneID:3932008 KEGG:nse:NSE_0293 PATRIC:22680679
OMA:YANANNE ProtClustDB:CLSK2527814
BioCyc:NSEN222891:GHFU-320-MONOMER Uniprot:Q2GEB2
Length = 189
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 38/108 (35%), Positives = 59/108 (54%)
Query: 10 KYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVN 69
KY+YE ++ +KE+++ +I D S +LK R+FL++ DKVKV+V
Sbjct: 81 KYKYEAKKESNLKRRKQKSST--IKEVQLRQSIGAGDLSTKLKKIREFLQEEDKVKVVVR 138
Query: 70 LKGRENEFRNIAIELIRRFQNDVGELASEENKNF--RDRNIFIILVPN 115
L+GRE +N+AI L+ + +VG + K + N FIIL PN
Sbjct: 139 LRGREMTNKNLAINLLNKVVEEVGSEVGKLEKEIVQNNNNFFIILAPN 186
>TIGR_CMR|SPO_2638 [details] [associations]
symbol:SPO_2638 "translation initiation factor IF-3"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] HAMAP:MF_00080
InterPro:IPR001288 InterPro:IPR019813 InterPro:IPR019814
InterPro:IPR019815 Pfam:PF00707 Pfam:PF05198 PROSITE:PS00938
GO:GO:0005737 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003743
KO:K02520 Gene3D:3.10.20.80 PANTHER:PTHR10938 SUPFAM:SSF54364
SUPFAM:SSF55200 eggNOG:COG0290 TIGRFAMs:TIGR00168
HOGENOM:HOG000035157 OMA:APKAPIN ProtClustDB:PRK00028
RefSeq:YP_167848.1 HSSP:P0A707 ProteinModelPortal:Q5LQ58
GeneID:3195359 KEGG:sil:SPO2638 PATRIC:23378685 Uniprot:Q5LQ58
Length = 182
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 36/106 (33%), Positives = 56/106 (52%)
Query: 10 KYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVN 69
KY+YE +++KE+K N D HDY V+++ KFL++GDKVKV +
Sbjct: 75 KYKYEQQKRESEARKKQKI--IEVKEVKFRPNTDTHDYEVKMRNVYKFLENGDKVKVTLR 132
Query: 70 LKGRENEFRNIAIELIRRFQNDVGELASEENK-NFRDRNIFIILVP 114
+GRE +N+ EL+ R DV E+ EN R + +++ P
Sbjct: 133 FRGREMAHQNLGRELLERVAEDVKEMGKIENMPKMEGRQMIMMIGP 178
>UNIPROTKB|Q0C535 [details] [associations]
symbol:infC "Translation initiation factor IF-3"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0005737
"cytoplasm" evidence=ISS] HAMAP:MF_00080 InterPro:IPR001288
InterPro:IPR019813 InterPro:IPR019814 InterPro:IPR019815
Pfam:PF00707 Pfam:PF05198 PROSITE:PS00938 GO:GO:0005737
GO:GO:0003743 EMBL:CP000158 GenomeReviews:CP000158_GR KO:K02520
Gene3D:3.10.20.80 PANTHER:PTHR10938 SUPFAM:SSF54364 SUPFAM:SSF55200
eggNOG:COG0290 TIGRFAMs:TIGR00168 HOGENOM:HOG000035157 OMA:APKAPIN
ProtClustDB:PRK00028 RefSeq:YP_759158.1 ProteinModelPortal:Q0C535
SMR:Q0C535 STRING:Q0C535 GeneID:4290109 KEGG:hne:HNE_0428
PATRIC:32213648 BioCyc:HNEP228405:GI69-472-MONOMER Uniprot:Q0C535
Length = 180
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 29/84 (34%), Positives = 51/84 (60%)
Query: 32 DLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQND 91
+LKE+K+ NID HDY V+ +A +F ++GDKVK+ + +GRE +++ +EL+ + + D
Sbjct: 96 ELKEIKIRPNIDTHDYEVKARAIARFFEEGDKVKITLRFRGREMAHQHLGMELLEKVKKD 155
Query: 92 VGELASEE-NKNFRDRNIFIILVP 114
E A E + + ++L P
Sbjct: 156 FEETAKVELEPKLEGKQMTMVLAP 179
>TIGR_CMR|SO_2300 [details] [associations]
symbol:SO_2300 "translation initiation factor IF-3"
species:211586 "Shewanella oneidensis MR-1" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] HAMAP:MF_00080
InterPro:IPR001288 InterPro:IPR019813 InterPro:IPR019814
InterPro:IPR019815 Pfam:PF00707 Pfam:PF05198 PROSITE:PS00938
GO:GO:0005737 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0003743
KO:K02520 Gene3D:3.10.20.80 PANTHER:PTHR10938 SUPFAM:SSF54364
SUPFAM:SSF55200 eggNOG:COG0290 TIGRFAMs:TIGR00168
HOGENOM:HOG000035157 OMA:APKAPIN ProtClustDB:PRK00028
RefSeq:NP_717896.2 ProteinModelPortal:Q8EER8 SMR:Q8EER8
GeneID:1170025 KEGG:son:SO_2300 PATRIC:23524223 Uniprot:Q8EER8
Length = 178
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 29/88 (32%), Positives = 52/88 (59%)
Query: 30 RMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQ 89
++ +KE+K D++DY V+L+ +FL+DGDK K+ + +GRE +N+ ++L+ R +
Sbjct: 90 QVQVKEIKFRPGTDENDYQVKLRNLIRFLEDGDKAKITLRFRGREMAHQNLGMDLLNRIK 149
Query: 90 NDVGELASEEN-KNFRDRNIFIILVPNK 116
D+ E A E+ R ++L P K
Sbjct: 150 TDLDEYAVVESFPKMEGRQAIMVLAPKK 177
>TIGR_CMR|BA_4819 [details] [associations]
symbol:BA_4819 "translation initiation factor IF-3"
species:198094 "Bacillus anthracis str. Ames" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] HAMAP:MF_00080
InterPro:IPR001288 InterPro:IPR019813 InterPro:IPR019814
InterPro:IPR019815 Pfam:PF00707 Pfam:PF05198 PROSITE:PS00938
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003743 KO:K02520 Gene3D:3.10.20.80
PANTHER:PTHR10938 SUPFAM:SSF54364 SUPFAM:SSF55200 eggNOG:COG0290
TIGRFAMs:TIGR00168 RefSeq:NP_847022.1 RefSeq:YP_021465.2
RefSeq:YP_030718.1 ProteinModelPortal:Q81L15 SMR:Q81L15
IntAct:Q81L15 DNASU:1083958 EnsemblBacteria:EBBACT00000012731
EnsemblBacteria:EBBACT00000018781 EnsemblBacteria:EBBACT00000023613
GeneID:1083958 GeneID:2815793 GeneID:2851577 KEGG:ban:BA_4819
KEGG:bar:GBAA_4819 KEGG:bat:BAS4471 HOGENOM:HOG000035157
OMA:APKAPIN ProtClustDB:PRK00028
BioCyc:BANT260799:GJAJ-4528-MONOMER
BioCyc:BANT261594:GJ7F-4681-MONOMER Uniprot:Q81L15
Length = 167
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 29/85 (34%), Positives = 52/85 (61%)
Query: 31 MDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQN 90
+ +KE+++ ID+HD++ +L+ A KFL+ GDKVK + KGR + I ++ RF
Sbjct: 79 ISMKEVRLSPTIDEHDFNTKLRNAIKFLEKGDKVKASIRFKGRAITHKEIGQRVLDRFSE 138
Query: 91 DVGELASEENK-NFRDRNIFIILVP 114
E+++ E+K R++F++L P
Sbjct: 139 ACAEVSTIESKPKMEGRSMFLVLAP 163
>UNIPROTKB|P0A707 [details] [associations]
symbol:infC "protein chain initiation factor IF-3"
species:83333 "Escherichia coli K-12" [GO:0005515 "protein binding"
evidence=IPI] [GO:0016020 "membrane" evidence=IDA] [GO:0032790
"ribosome disassembly" evidence=IMP] [GO:0009409 "response to cold"
evidence=IDA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA;IDA] [GO:0043022 "ribosome
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA]
HAMAP:MF_00080 InterPro:IPR001288 InterPro:IPR019813
InterPro:IPR019814 InterPro:IPR019815 Pfam:PF00707 Pfam:PF05198
PROSITE:PS00938 GO:GO:0005737 GO:GO:0016020 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0009409 GO:GO:0043022 GO:GO:0003743 GO:GO:0032790 KO:K02520
Gene3D:3.10.20.80 PANTHER:PTHR10938 SUPFAM:SSF54364 SUPFAM:SSF55200
eggNOG:COG0290 TIGRFAMs:TIGR00168 HOGENOM:HOG000035157 OMA:APKAPIN
ProtClustDB:PRK00028 EMBL:V00291 EMBL:K02844 PIR:S13748
RefSeq:NP_416233.1 RefSeq:YP_489980.1 PDB:2IFE PDBsum:2IFE
ProteinModelPortal:P0A707 SMR:P0A707 DIP:DIP-36176N IntAct:P0A707
MINT:MINT-1221578 PhosSite:P010443 PaxDb:P0A707 PRIDE:P0A707
EnsemblBacteria:EBESCT00000002624 EnsemblBacteria:EBESCT00000002625
EnsemblBacteria:EBESCT00000002627 EnsemblBacteria:EBESCT00000017763
EnsemblBacteria:EBESCT00000232604 GeneID:12933198 GeneID:946225
KEGG:ecj:Y75_p1693 KEGG:eco:b1718 PATRIC:32118740 EchoBASE:EB0501
EcoGene:EG10506 BioCyc:EcoCyc:EG10506-MONOMER
BioCyc:ECOL316407:JW5829-MONOMER ChEMBL:CHEMBL1075077
EvolutionaryTrace:P0A707 Genevestigator:P0A707 Uniprot:P0A707
Length = 180
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 29/88 (32%), Positives = 53/88 (60%)
Query: 31 MDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQN 90
+ +KE+K D+ DY V+L++ +FL++GDK K+ + +GRE + I +E++ R ++
Sbjct: 91 IQVKEIKFRPGTDEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQQIGMEVLNRVKD 150
Query: 91 DVGELASEEN--KNFRDRNIFIILVPNK 116
D+ ELA E+ R + ++L P K
Sbjct: 151 DLQELAVVESFPTKIEGRQMIMVLAPKK 178
>TIGR_CMR|ECH_0007 [details] [associations]
symbol:ECH_0007 "translation initiation factor IF-3"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] HAMAP:MF_00080
InterPro:IPR001288 InterPro:IPR019814 InterPro:IPR019815
Pfam:PF00707 Pfam:PF05198 PROSITE:PS00938 GO:GO:0005737
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003743 KO:K02520
Gene3D:3.10.20.80 PANTHER:PTHR10938 SUPFAM:SSF54364 SUPFAM:SSF55200
eggNOG:COG0290 TIGRFAMs:TIGR00168 HOGENOM:HOG000035157
ProtClustDB:PRK00028 RefSeq:YP_506842.1 ProteinModelPortal:Q2GI91
STRING:Q2GI91 GeneID:3927184 KEGG:ech:ECH_0007 PATRIC:20575587
OMA:FDRRAPV BioCyc:ECHA205920:GJNR-7-MONOMER Uniprot:Q2GI91
Length = 173
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 36/111 (32%), Positives = 55/111 (49%)
Query: 6 FFLSKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVK 65
F SKYRY + +KELK NI +DY+V+L R F++ GDKVK
Sbjct: 65 FDYSKYRYSHKKKISDSKKKQKT--IIVKELKFKLNIGDNDYNVKLNMLRGFIERGDKVK 122
Query: 66 VIVNLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRDRNIFIILVPNK 116
+ + GRE + +E+I R D ++A EN ++ NI +++ K
Sbjct: 123 ISLRFIGREILHPEVGMEIIERLIRDTADIAKPENLPKKEGNIINMVLTAK 173
>TIGR_CMR|CBU_1325 [details] [associations]
symbol:CBU_1325 "translation initiation factor IF-3"
species:227377 "Coxiella burnetii RSA 493" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] HAMAP:MF_00080
InterPro:IPR001288 InterPro:IPR019813 InterPro:IPR019814
InterPro:IPR019815 Pfam:PF00707 Pfam:PF05198 PROSITE:PS00938
GO:GO:0005737 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003743
KO:K02520 Gene3D:3.10.20.80 PANTHER:PTHR10938 SUPFAM:SSF54364
SUPFAM:SSF55200 eggNOG:COG0290 TIGRFAMs:TIGR00168
HOGENOM:HOG000035157 ProtClustDB:PRK00028 RefSeq:NP_820315.1
ProteinModelPortal:Q83C11 PRIDE:Q83C11 GeneID:1209231
KEGG:cbu:CBU_1325 PATRIC:17931385 OMA:HDYQTKV
BioCyc:CBUR227377:GJ7S-1316-MONOMER Uniprot:Q83C11
Length = 185
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 29/84 (34%), Positives = 47/84 (55%)
Query: 33 LKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDV 92
LKE+K D DY V+L+ FL GDKVKV + +GRE + R + +EL+ R + D+
Sbjct: 86 LKEVKFRPGTDVGDYQVKLRKIATFLDRGDKVKVSLRFRGREMQHRELGLELLGRVKRDL 145
Query: 93 GELASEENKNFRDRNIFIILVPNK 116
G + E+ R + ++++ K
Sbjct: 146 GNIVVEQEPRLEGRQMTMVVMKAK 169
>TIGR_CMR|CPS_2908 [details] [associations]
symbol:CPS_2908 "translation initiation factor IF-3"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] HAMAP:MF_00080
InterPro:IPR001288 InterPro:IPR019813 InterPro:IPR019814
InterPro:IPR019815 Pfam:PF00707 Pfam:PF05198 PROSITE:PS00938
GO:GO:0005737 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0003743
KO:K02520 Gene3D:3.10.20.80 PANTHER:PTHR10938 SUPFAM:SSF54364
SUPFAM:SSF55200 eggNOG:COG0290 TIGRFAMs:TIGR00168
HOGENOM:HOG000035157 OMA:APKAPIN RefSeq:YP_269609.1
ProteinModelPortal:Q480B0 SMR:Q480B0 STRING:Q480B0 GeneID:3522158
KEGG:cps:CPS_2908 PATRIC:21468843
BioCyc:CPSY167879:GI48-2958-MONOMER Uniprot:Q480B0
Length = 185
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 29/87 (33%), Positives = 52/87 (59%)
Query: 30 RMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQ 89
++ +KE+K D+ DY V+L+ ++FL+ GDKVKV + +GRE + + ++L+ R +
Sbjct: 96 QIQVKEIKFRPGTDEGDYQVKLRNLKRFLEGGDKVKVTLRFRGREMAHQELGLQLLTRVK 155
Query: 90 NDVGELASEE--NKNFRDRNIFIILVP 114
ND+ EL E + R + ++L P
Sbjct: 156 NDLEELTVLEFFPRRAEGRQMVMVLAP 182
>TIGR_CMR|APH_1263 [details] [associations]
symbol:APH_1263 "translation initiation factor IF-3"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR001288
InterPro:IPR019814 InterPro:IPR019815 Pfam:PF00707 Pfam:PF05198
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0003743 KO:K02520
Gene3D:3.10.20.80 PANTHER:PTHR10938 SUPFAM:SSF54364 SUPFAM:SSF55200
eggNOG:COG0290 TIGRFAMs:TIGR00168 HOGENOM:HOG000035157 OMA:APKAPIN
RefSeq:YP_505782.1 ProteinModelPortal:Q2GIL9 STRING:Q2GIL9
GeneID:3931324 KEGG:aph:APH_1263 PATRIC:20951316
ProtClustDB:CLSK747415 BioCyc:APHA212042:GHPM-1266-MONOMER
Uniprot:Q2GIL9
Length = 172
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 29/104 (27%), Positives = 56/104 (53%)
Query: 9 SKYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
SK +Y S+A +KELK NI+ +DY+++L + F++ G+KVKV +
Sbjct: 64 SKQKYNKKKHGVTKKQRSSA----VKELKFRINIEDNDYNIKLNNLKSFIEKGNKVKVSL 119
Query: 69 NLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRDRNIFIIL 112
GRE +++ + ++++ R +D +A E+ D N+ ++
Sbjct: 120 RFVGRELQYKEVGLDILDRLVSDTEGIAKPESSPRMDGNVLSMM 163
>UNIPROTKB|P65135 [details] [associations]
symbol:infC "Translation initiation factor IF-3"
species:1773 "Mycobacterium tuberculosis" [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0040007 "growth" evidence=IMP]
HAMAP:MF_00080 InterPro:IPR001288 InterPro:IPR019813
InterPro:IPR019814 InterPro:IPR019815 Pfam:PF00707 Pfam:PF05198
PROSITE:PS00938 GO:GO:0005886 GO:GO:0005737 GO:GO:0040007
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
EMBL:BX842577 GO:GO:0003743 KO:K02520 Gene3D:3.10.20.80
PANTHER:PTHR10938 SUPFAM:SSF54364 SUPFAM:SSF55200 eggNOG:COG0290
TIGRFAMs:TIGR00168 HOGENOM:HOG000035157 OMA:APKAPIN
ProtClustDB:PRK00028 PIR:D70619 RefSeq:NP_216157.1
RefSeq:NP_336134.1 ProteinModelPortal:P65135 SMR:P65135
EnsemblBacteria:EBMYCT00000002105 EnsemblBacteria:EBMYCT00000069306
GeneID:885478 GeneID:923998 KEGG:mtc:MT1679 KEGG:mtu:Rv1641
PATRIC:18125456 TubercuList:Rv1641 Uniprot:P65135
Length = 201
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 33/115 (28%), Positives = 54/115 (46%)
Query: 10 KYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVN 69
KY+YE + +KE K+ ID HDY + +FL+ G KVKV +
Sbjct: 64 KYKYEAAQKARESRRNQ--QQTVVKEQKLRPKIDDHDYETKKGHVVRFLEAGSKVKVTIM 121
Query: 70 LKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNKALLQKAQ 123
+GRE + L++R DV + E +D RN+ ++L P++ +A+
Sbjct: 122 FRGREQSRPELGYRLLQRLGADVADYGFIETSAKQDGRNMTMVLAPHRGAKTRAR 176
>UNIPROTKB|P65144 [details] [associations]
symbol:infC "Translation initiation factor IF-3"
species:170187 "Streptococcus pneumoniae TIGR4" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_00080 InterPro:IPR001288
InterPro:IPR019813 InterPro:IPR019814 InterPro:IPR019815
Pfam:PF00707 Pfam:PF05198 PROSITE:PS00938 GO:GO:0005737
EMBL:AE005672 GenomeReviews:AE005672_GR GO:GO:0003743 KO:K02520
Gene3D:3.10.20.80 PANTHER:PTHR10938 SUPFAM:SSF54364 SUPFAM:SSF55200
eggNOG:COG0290 TIGRFAMs:TIGR00168 HOGENOM:HOG000035157 OMA:APKAPIN
ProtClustDB:PRK00028 PIR:G95110 RefSeq:NP_345440.1
ProteinModelPortal:P65144 SMR:P65144 IntAct:P65144
EnsemblBacteria:EBSTRT00000027262 GeneID:930913 KEGG:spn:SP_0959
PATRIC:19706323 Uniprot:P65144
Length = 185
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 28/83 (33%), Positives = 48/83 (57%)
Query: 33 LKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDV 92
+KE+++ ID+ D+ +L+ ARKFL+ G+KVKV + KGR + I +++ F
Sbjct: 98 VKEVRLSPTIDKGDFDTKLRNARKFLEKGNKVKVSIRFKGRMITHKEIGAKVLAEFAEAT 157
Query: 93 GELASEENKNFRD-RNIFIILVP 114
++A E + D R +F+ L P
Sbjct: 158 QDIAIIEQRAKMDGRQMFMQLAP 180
>TIGR_CMR|DET_0752 [details] [associations]
symbol:DET_0752 "translation initiation factor IF-3"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] HAMAP:MF_00080
InterPro:IPR001288 InterPro:IPR019813 InterPro:IPR019814
InterPro:IPR019815 Pfam:PF00707 Pfam:PF05198 PROSITE:PS00938
GO:GO:0005737 EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0003743
KO:K02520 Gene3D:3.10.20.80 PANTHER:PTHR10938 SUPFAM:SSF54364
SUPFAM:SSF55200 eggNOG:COG0290 TIGRFAMs:TIGR00168
HOGENOM:HOG000035157 OMA:HDYQTKV RefSeq:YP_181486.1
ProteinModelPortal:Q3Z8G3 SMR:Q3Z8G3 STRING:Q3Z8G3 GeneID:3229940
KEGG:det:DET0752 PATRIC:21608565 ProtClustDB:CLSK837317
BioCyc:DETH243164:GJNF-753-MONOMER Uniprot:Q3Z8G3
Length = 168
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 31/117 (26%), Positives = 61/117 (52%)
Query: 10 KYRYEXXXXXXXXXXXSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVN 69
KYR+E + LKE+++ I +HD+ + ++ARK L+ GDKVK+ V
Sbjct: 47 KYRFEQTKKDREAKKTQKVSL--LKEIRVRPKIGEHDFDAKARSARKQLECGDKVKLTVM 104
Query: 70 LKGRENEFRNIAIELIRRFQNDVGELASEENK-NFRDRNIFIILVPNK-ALLQKAQE 124
+GRE + ++L+++ + + ++A+ E + + + + L+P A K +E
Sbjct: 105 FRGREITHAELGLKLLKKMADSLTDIATIEGQPSLLGSRMHLTLLPKAPAKATKVKE 161
>TIGR_CMR|CJE_0200 [details] [associations]
symbol:CJE_0200 "translation initiation factor IF-3"
species:195099 "Campylobacter jejuni RM1221" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] HAMAP:MF_00080
InterPro:IPR001288 InterPro:IPR019813 InterPro:IPR019814
InterPro:IPR019815 Pfam:PF00707 Pfam:PF05198 PROSITE:PS00938
GO:GO:0005737 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0003743
KO:K02520 Gene3D:3.10.20.80 PANTHER:PTHR10938 SUPFAM:SSF54364
SUPFAM:SSF55200 eggNOG:COG0290 TIGRFAMs:TIGR00168
HOGENOM:HOG000035157 OMA:APKAPIN ProtClustDB:PRK00028
RefSeq:YP_178223.1 ProteinModelPortal:Q5HWW2 SMR:Q5HWW2
STRING:Q5HWW2 GeneID:3230963 KEGG:cjr:CJE0200 PATRIC:20042112
BioCyc:CJEJ195099:GJC0-205-MONOMER Uniprot:Q5HWW2
Length = 172
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 27/88 (30%), Positives = 49/88 (55%)
Query: 31 MDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQN 90
+D+KE+K+ I Q+D + ++K A +FL+ G V+ V LKGRE + L+ +
Sbjct: 85 IDIKEIKLSVKIAQNDINYKVKHALEFLEQGKHVRFRVFLKGREMATPEAGVALLEKIWT 144
Query: 91 DVGELASEENK-NFRDRNIFIILVPNKA 117
+ A+ + + NF R + +++ P KA
Sbjct: 145 MIENEANRDKEPNFEGRYVNMLVTPKKA 172
>TIGR_CMR|GSU_1516 [details] [associations]
symbol:GSU_1516 "translation initiation factor IF-3"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] HAMAP:MF_00080
InterPro:IPR001288 InterPro:IPR019813 InterPro:IPR019814
InterPro:IPR019815 Pfam:PF00707 Pfam:PF05198 PROSITE:PS00938
GO:GO:0005737 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003743
KO:K02520 Gene3D:3.10.20.80 PANTHER:PTHR10938 SUPFAM:SSF54364
SUPFAM:SSF55200 eggNOG:COG0290 TIGRFAMs:TIGR00168
HOGENOM:HOG000035157 OMA:APKAPIN ProtClustDB:PRK00028
RefSeq:NP_952567.1 HSSP:P03000 ProteinModelPortal:Q74D03 SMR:Q74D03
GeneID:2687717 KEGG:gsu:GSU1516 PATRIC:22025873
BioCyc:GSUL243231:GH27-1499-MONOMER Uniprot:Q74D03
Length = 172
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 24/87 (27%), Positives = 48/87 (55%)
Query: 29 NRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRF 88
+ + +KE+K+ D+HD ++K R+F+++G+K KV + +GRE + R
Sbjct: 82 SHVQVKEVKLRPKTDEHDLMTKIKHVRRFIEEGNKAKVTLVFRGREITHLEFGSRALDRV 141
Query: 89 QNDVGELASEENK-NFRDRNIFIILVP 114
++ ++A E K R++F+I+ P
Sbjct: 142 AAELEDIAVVEFKPKMEGRSMFMIVAP 168
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.138 0.381 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 141 130 0.00091 102 3 11 22 0.38 31
29 0.42 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 18
No. of states in DFA: 483 (51 KB)
Total size of DFA: 104 KB (2074 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 14.23u 0.17s 14.40t Elapsed: 00:00:01
Total cpu time: 14.23u 0.17s 14.40t Elapsed: 00:00:01
Start: Fri May 10 00:25:26 2013 End: Fri May 10 00:25:27 2013