BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044576
(141 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B1XM04|IF3_SYNP2 Translation initiation factor IF-3 OS=Synechococcus sp. (strain
ATCC 27264 / PCC 7002 / PR-6) GN=infC PE=3 SV=1
Length = 178
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 73/110 (66%), Gaps = 3/110 (2%)
Query: 9 SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
KY++EQ+K+ + +KK + DLKE+KM Y I++HDY VR+ +A++FLK GDKVK +
Sbjct: 70 GKYKFEQEKRAREAKKKQ--HNADLKEVKMRYKIEEHDYQVRVNSAQRFLKSGDKVKATI 127
Query: 69 NLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNKA 117
+GRE + N+A +L+ R D+ E+ + + R+ RN+ +IL P K+
Sbjct: 128 TFRGREIQHSNLAQKLLDRMAKDLEEVGEIQQRPKREGRNMMMILAPKKS 177
>sp|Q85G77|IF3C_CYAME Translation initiation factor IF-3, chloroplastic
OS=Cyanidioschyzon merolae GN=infC PE=3 SV=1
Length = 175
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 69/110 (62%), Gaps = 5/110 (4%)
Query: 9 SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
KY++E +KK K ++K N+ LKE++M YN+++HDY VRL A KFLK GDKVKV +
Sbjct: 70 GKYKFELEKKAKAKRK----NQSQLKEIQMSYNMEEHDYQVRLSQACKFLKAGDKVKVTL 125
Query: 69 NLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNKA 117
LKGRE + +A + +FQ DV LA ++ RN+ I VP K+
Sbjct: 126 MLKGREMQHLELAQNKMAQFQADVSSLAQLAKPPSQEGRNLSAIFVPKKS 175
>sp|B2IY66|IF3_NOSP7 Translation initiation factor IF-3 OS=Nostoc punctiforme (strain
ATCC 29133 / PCC 73102) GN=infC PE=3 SV=1
Length = 177
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 72/111 (64%), Gaps = 7/111 (6%)
Query: 9 SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
KY++EQ+KK + +KK + D+KE+KM Y I++HDY+VR+K A +FLKDGDKVK V
Sbjct: 71 GKYKFEQEKKAREARKKQ--HTADVKEVKMRYKIEEHDYNVRVKQAERFLKDGDKVKATV 128
Query: 69 NLKGRENEFRNIAIELIRRFQNDV---GELASEENKNFRDRNIFIILVPNK 116
+GRE + ++A +L++R D+ GEL K RN+ +++ P K
Sbjct: 129 MFRGREIQHSDLAEDLLKRMATDLEPFGELQQAPKKE--GRNMMMLISPKK 177
>sp|Q8YNE3|IF3_NOSS1 Translation initiation factor IF-3 OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=infC PE=3 SV=1
Length = 177
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 72/111 (64%), Gaps = 7/111 (6%)
Query: 9 SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
KY++EQ+KK + +KK + D+KE+KM Y I++HDY+VR+K A +FLKDGDKVK V
Sbjct: 71 GKYKFEQEKKAREARKKQ--HTADVKEVKMRYKIEEHDYNVRVKQAERFLKDGDKVKATV 128
Query: 69 NLKGRENEFRNIAIELIRRFQNDV---GELASEENKNFRDRNIFIILVPNK 116
+GRE + ++A +L++R D+ GE+ K RN+ +++ P K
Sbjct: 129 MFRGREIQHSDLAEDLLKRMATDLEPFGEVQQAPKKE--GRNMMMLISPKK 177
>sp|Q3MBH6|IF3_ANAVT Translation initiation factor IF-3 OS=Anabaena variabilis (strain
ATCC 29413 / PCC 7937) GN=infC PE=3 SV=1
Length = 177
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 72/111 (64%), Gaps = 7/111 (6%)
Query: 9 SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
KY++EQ+KK + +KK + D+KE+KM Y I++HDY+VR+K A +FLKDGDKVK V
Sbjct: 71 GKYKFEQEKKAREARKKQ--HTADVKEVKMRYKIEEHDYNVRVKQAERFLKDGDKVKATV 128
Query: 69 NLKGRENEFRNIAIELIRRFQNDV---GELASEENKNFRDRNIFIILVPNK 116
+GRE + ++A +L++R D+ GE+ K RN+ +++ P K
Sbjct: 129 MFRGREIQHSDLAEDLLKRMATDLEPFGEVQQAPKKE--GRNMMMLISPKK 177
>sp|Q8R9C2|IF3_THETN Translation initiation factor IF-3 OS=Thermoanaerobacter
tengcongensis (strain DSM 15242 / JCM 11007 / NBRC
100824 / MB4) GN=infC PE=3 SV=1
Length = 180
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 71/110 (64%), Gaps = 3/110 (2%)
Query: 8 LSKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVI 67
KYRYE K++K +KK +++KE++M NI+ HD+ V+LK+A KFLKDGDKVKV
Sbjct: 72 FGKYRYELSKREKEAKKKQKI--INVKEIRMSPNIEDHDFGVKLKSAIKFLKDGDKVKVT 129
Query: 68 VNLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNK 116
+ +GRE ++A +L++RF ++ E + E D RN+ +++ P K
Sbjct: 130 IRFRGREAAHTSLAEDLLKRFAEELREYGNVEKAPSMDGRNMMMVIAPKK 179
>sp|Q7NJS6|IF3_GLOVI Translation initiation factor IF-3 OS=Gloeobacter violaceus (strain
PCC 7421) GN=infC PE=3 SV=1
Length = 199
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 68/110 (61%), Gaps = 3/110 (2%)
Query: 9 SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
KY++EQ+K+ K +KK + D+KE+KM Y I +HDY VRL+ +FLKDGDKVK +
Sbjct: 92 GKYKFEQEKRAKEARKKQ--HTADVKEVKMRYTIGEHDYQVRLRDTIRFLKDGDKVKATI 149
Query: 69 NLKGRENEFRNIAIELIRRFQNDVGELAS-EENKNFRDRNIFIILVPNKA 117
+GRE + N+A +L+ + D E+ ++ + RN+ +IL P +
Sbjct: 150 MFRGREIQHANLAKDLLMQLAADSAEIGEVQQEPSVEGRNMIMILSPKRT 199
>sp|Q1XDQ6|IF3C_PORYE Translation initiation factor IF-3, chloroplastic OS=Porphyra
yezoensis GN=infC PE=3 SV=1
Length = 182
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 69/108 (63%), Gaps = 3/108 (2%)
Query: 10 KYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVN 69
KY++ Q+K+ + +KK + +KE+KM Y I++HDY VR+ A KF++ GDKVK +
Sbjct: 75 KYKFTQEKRAREAKKKQ--HNSSIKEVKMRYKIEEHDYKVRINQASKFIQAGDKVKATIT 132
Query: 70 LKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNK 116
+GRE + N+AI+L+ + +D+ +A + RD RN+ ++L P K
Sbjct: 133 FRGREIQHSNLAIDLLNKMASDLNAIAEIQQAPSRDGRNVIMLLSPKK 180
>sp|Q0IDZ5|IF3_SYNS3 Translation initiation factor IF-3 OS=Synechococcus sp. (strain
CC9311) GN=infC PE=3 SV=1
Length = 212
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 81/128 (63%), Gaps = 8/128 (6%)
Query: 9 SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
K+++EQ+KK K +KKS ++ ++KE+KM Y IDQHDY VR+ A++FLK GDKVK V
Sbjct: 75 GKFKFEQEKKAKEAKKKS--HQTEVKEVKMRYKIDQHDYDVRIGQAQRFLKAGDKVKCTV 132
Query: 69 NLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNKALLQKAQEPPK 127
+GRE + +A L+RR D+ E A + R+ RN+ + L P KA L K K
Sbjct: 133 IFRGREIQHTALAEVLLRRMAKDLEEPAEVQQPPKREGRNMIMFLTPRKAPLVK-----K 187
Query: 128 KKDKQVVD 135
KD++VV+
Sbjct: 188 DKDEEVVN 195
>sp|P51231|IF3C_PORPU Translation initiation factor IF-3, chloroplastic OS=Porphyra
purpurea GN=infC PE=3 SV=1
Length = 182
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 67/108 (62%), Gaps = 3/108 (2%)
Query: 10 KYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVN 69
KY++ Q+K+ + +KK + +KE+KM Y I++HDY VR+ A KFL+ GDKVK +
Sbjct: 75 KYKFTQEKRAREAKKKQ--HNSSIKEVKMRYKIEEHDYKVRINQASKFLQSGDKVKATIT 132
Query: 70 LKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNK 116
+GRE + N+AI L+ + D+ +A + RD RN+ ++L P K
Sbjct: 133 FRGREIQHSNLAINLLNKMAADLVTIAEIQQAPSRDGRNVIMLLSPKK 180
>sp|Q8DIG8|IF3_THEEB Translation initiation factor IF-3 OS=Thermosynechococcus elongatus
(strain BP-1) GN=infC PE=3 SV=1
Length = 182
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 68/109 (62%), Gaps = 3/109 (2%)
Query: 9 SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
K+R+EQ+KK + +KK + D+KE+KM Y I++HDY+V + A +FLK GDKVK V
Sbjct: 76 GKFRFEQEKKAREARKKQHTS--DVKEVKMRYKIEEHDYNVCINRAERFLKAGDKVKATV 133
Query: 69 NLKGRENEFRNIAIELIRRFQNDVGELAS-EENKNFRDRNIFIILVPNK 116
+GRE + ++A EL+ R ND+ +A ++ RN+ + L P +
Sbjct: 134 TFRGREIQHSHLAEELLNRMANDLQAVAEVQQAPKQEGRNMIMFLAPKR 182
>sp|A5GI06|IF3_SYNPW Translation initiation factor IF-3 OS=Synechococcus sp. (strain
WH7803) GN=infC PE=3 SV=1
Length = 220
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 72/114 (63%), Gaps = 3/114 (2%)
Query: 9 SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
KY++EQ+KK K +KKS ++ ++KE+KM Y IDQHDY VR+ A++FLK GDKVK V
Sbjct: 75 GKYKFEQEKKAKEAKKKS--HQTEVKEVKMRYKIDQHDYDVRIGQAQRFLKAGDKVKCTV 132
Query: 69 NLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNKALLQK 121
+GRE + +A L+RR D+ E A + R+ RN+ + L P K L K
Sbjct: 133 IFRGREIQHTALAETLLRRMAKDLEEPAEIQQPPKREGRNMIMFLTPRKTPLVK 186
>sp|P0A3K9|IF3_BRUSU Translation initiation factor IF-3 OS=Brucella suis biovar 1
(strain 1330) GN=infC PE=3 SV=1
Length = 178
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 67/108 (62%), Gaps = 3/108 (2%)
Query: 8 LSKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVI 67
L K +Y+ QKK +KK +++KE+KM NID HDY V++KAA++F ++GDKVKV
Sbjct: 72 LGKLKYQNQKKAAEARKKQKT--VEIKEIKMRPNIDTHDYEVKMKAAQRFFEEGDKVKVT 129
Query: 68 VNLKGRENEFRNIAIELIRRFQNDVGELAS-EENKNFRDRNIFIILVP 114
+ +GRE + + ++L++R + D E+A E R + ++L P
Sbjct: 130 LRFRGREMAHQELGMKLLQRVKEDTVEIAKVESEPKLEGRQMMMVLAP 177
>sp|P0A3K8|IF3_BRUME Translation initiation factor IF-3 OS=Brucella melitensis biotype 1
(strain 16M / ATCC 23456 / NCTC 10094) GN=infC PE=3 SV=1
Length = 178
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 67/108 (62%), Gaps = 3/108 (2%)
Query: 8 LSKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVI 67
L K +Y+ QKK +KK +++KE+KM NID HDY V++KAA++F ++GDKVKV
Sbjct: 72 LGKLKYQNQKKAAEARKKQKT--VEIKEIKMRPNIDTHDYEVKMKAAQRFFEEGDKVKVT 129
Query: 68 VNLKGRENEFRNIAIELIRRFQNDVGELAS-EENKNFRDRNIFIILVP 114
+ +GRE + + ++L++R + D E+A E R + ++L P
Sbjct: 130 LRFRGREMAHQELGMKLLQRVKEDTVEIAKVESEPKLEGRQMMMVLAP 177
>sp|P0A3L0|IF3_BRUAB Translation initiation factor IF-3 OS=Brucella abortus biovar 1
(strain 9-941) GN=infC PE=3 SV=1
Length = 178
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 67/108 (62%), Gaps = 3/108 (2%)
Query: 8 LSKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVI 67
L K +Y+ QKK +KK +++KE+KM NID HDY V++KAA++F ++GDKVKV
Sbjct: 72 LGKLKYQNQKKAAEARKKQKT--VEIKEIKMRPNIDTHDYEVKMKAAQRFFEEGDKVKVT 129
Query: 68 VNLKGRENEFRNIAIELIRRFQNDVGELAS-EENKNFRDRNIFIILVP 114
+ +GRE + + ++L++R + D E+A E R + ++L P
Sbjct: 130 LRFRGREMAHQELGMKLLQRVKEDTVEIAKVESEPKLEGRQMMMVLAP 177
>sp|A3PFC5|IF3_PROM0 Translation initiation factor IF-3 OS=Prochlorococcus marinus
(strain MIT 9301) GN=infC PE=3 SV=1
Length = 190
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 73/114 (64%), Gaps = 3/114 (2%)
Query: 9 SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
KY++EQ+KK K +KKS ++ ++KE+KM Y ID+HDY VR+ A KFLK GDKVK V
Sbjct: 75 GKYKFEQEKKAKEARKKS--HQTEVKEVKMRYKIDKHDYDVRIGQATKFLKSGDKVKCTV 132
Query: 69 NLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNKALLQK 121
+GRE + N+A L+ R ND+ E + + K R+ RN+ + L P K L K
Sbjct: 133 IFRGREIQHSNLAETLLLRMANDLEEQSEVQQKPKREGRNMIMFLSPRKTPLIK 186
>sp|Q3ANG8|IF3_SYNSC Translation initiation factor IF-3 OS=Synechococcus sp. (strain
CC9605) GN=infC PE=3 SV=1
Length = 217
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 74/117 (63%), Gaps = 3/117 (2%)
Query: 9 SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
K+++EQ+KK K +KKS ++ ++KE+KM Y IDQHDY VR+ A++FLK GDKVK V
Sbjct: 75 GKFKFEQEKKAKEAKKKS--HQTEVKEVKMRYKIDQHDYDVRIGQAQRFLKAGDKVKCTV 132
Query: 69 NLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNKALLQKAQE 124
+GRE + +A L+RR D+ E A + R+ RN+ + L P K L K +E
Sbjct: 133 IFRGREIQHTALAETLLRRMAKDLEEKAEIQQAPKREGRNMIMFLTPRKTPLVKKEE 189
>sp|A6WX21|IF3_OCHA4 Translation initiation factor IF-3 OS=Ochrobactrum anthropi (strain
ATCC 49188 / DSM 6882 / NCTC 12168) GN=infC PE=3 SV=1
Length = 178
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 66/108 (61%), Gaps = 3/108 (2%)
Query: 8 LSKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVI 67
L K +Y+ QKK +KK +++KE+KM NID HDY V++KAA +F ++GDKVKV
Sbjct: 72 LGKLKYQNQKKAAEARKKQKT--VEIKEIKMRPNIDTHDYEVKMKAALRFFEEGDKVKVT 129
Query: 68 VNLKGRENEFRNIAIELIRRFQNDVGELAS-EENKNFRDRNIFIILVP 114
+ +GRE + + ++L++R + D E+A E R + ++L P
Sbjct: 130 LRFRGREMAHQELGMKLLQRVKEDTVEIAKVESEPKLEGRQMMMVLAP 177
>sp|Q7UA08|IF3_SYNPX Translation initiation factor IF-3 OS=Synechococcus sp. (strain
WH8102) GN=infC PE=3 SV=1
Length = 217
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 73/117 (62%), Gaps = 3/117 (2%)
Query: 9 SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
K+++EQ+KK K +KKS ++ ++KE+KM Y IDQHDY VR+ A +FLK GDKVK V
Sbjct: 75 GKFKFEQEKKAKEAKKKS--HQTEVKEVKMRYKIDQHDYDVRIGQAVRFLKAGDKVKCTV 132
Query: 69 NLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNKALLQKAQE 124
+GRE + +A L+RR D+ E A + R+ RN+ + L P K L K +E
Sbjct: 133 IFRGREIQHTALAETLLRRMAKDLEEKAEIQQAPKREGRNMIMFLTPRKTPLVKKEE 189
>sp|Q318A5|IF3_PROM9 Translation initiation factor IF-3 OS=Prochlorococcus marinus
(strain MIT 9312) GN=infC PE=3 SV=1
Length = 190
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 74/117 (63%), Gaps = 3/117 (2%)
Query: 9 SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
KY++EQ+KK K +KKS ++ ++KE+KM Y ID+HDY VR+ A KFLK GDKVK V
Sbjct: 75 GKYKFEQEKKAKEARKKS--HQTEVKEVKMRYKIDKHDYDVRIGQATKFLKSGDKVKCTV 132
Query: 69 NLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNKALLQKAQE 124
+GRE + N+A L+ + ND+ E + + K R+ RN+ + L P K L K E
Sbjct: 133 FFRGREIQHSNLAETLLLKMANDLEEQSEIQQKPKREGRNMIMFLSPRKTPLIKKDE 189
>sp|A2BTL8|IF3_PROMS Translation initiation factor IF-3 OS=Prochlorococcus marinus
(strain AS9601) GN=infC PE=3 SV=1
Length = 190
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 73/114 (64%), Gaps = 3/114 (2%)
Query: 9 SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
KY++EQ+KK K +KKS ++ ++KE+KM Y ID+HDY VR+ A KFLK GDKVK V
Sbjct: 75 GKYKFEQEKKAKEARKKS--HQTEVKEVKMRYKIDKHDYDVRIGQATKFLKSGDKVKCTV 132
Query: 69 NLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNKALLQK 121
+GRE + N+A L+ + ND+ E + + K R+ RN+ + L P K L K
Sbjct: 133 IFRGREIQHSNLAETLLLKMANDLEEQSEVQQKPKREGRNMIMFLSPRKTPLIK 186
>sp|Q5NL80|IF3_ZYMMO Translation initiation factor IF-3 OS=Zymomonas mobilis subsp.
mobilis (strain ATCC 31821 / ZM4 / CP4) GN=infC PE=3
SV=1
Length = 179
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 66/111 (59%), Gaps = 3/111 (2%)
Query: 5 YFFLSKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKV 64
+ + KY+YE QKK +K ++KE+K+ NIDQHDY ++K +FL+DGDKV
Sbjct: 70 FLDVGKYKYEAQKKANLARKTQKTQ--EIKEIKLRPNIDQHDYDTKMKKIVQFLEDGDKV 127
Query: 65 KVIVNLKGRENEFRNIAIELIRRFQNDVGELAS-EENKNFRDRNIFIILVP 114
KV + +GRE + +++++R Q D E+A E++ R + +++ P
Sbjct: 128 KVTLRFRGREMAHGQLGMQVMQRVQADTQEIAKVEQHPRMEGRQMLMVVAP 178
>sp|A2C586|IF3_PROM1 Translation initiation factor IF-3 OS=Prochlorococcus marinus
(strain NATL1A) GN=infC PE=3 SV=1
Length = 202
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 77/123 (62%), Gaps = 6/123 (4%)
Query: 10 KYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVN 69
K+++EQ+KK K +KKS ++ ++KE+KM Y IDQHDY VR+ A +FLK GDKVK V
Sbjct: 76 KFKFEQEKKAKEAKKKS--HQTEVKEVKMRYKIDQHDYQVRISQATRFLKAGDKVKCTVI 133
Query: 70 LKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNKA-LLQKAQEP-- 125
+GRE + +A L++R D+ E A + R+ RN+ + L P K LL+K E
Sbjct: 134 FRGREIQHTALAETLLKRMSKDLEEKAEVQQSPKREGRNMIMFLTPRKTPLLKKESETTE 193
Query: 126 PKK 128
PKK
Sbjct: 194 PKK 196
>sp|Q7V9N2|IF3_PROMA Translation initiation factor IF-3 OS=Prochlorococcus marinus
(strain SARG / CCMP1375 / SS120) GN=infC PE=3 SV=1
Length = 201
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 75/118 (63%), Gaps = 4/118 (3%)
Query: 9 SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
K+++EQ+KK K +KKS ++ ++KE+KM Y ID+HDY VR+ A +FLK GDKVK V
Sbjct: 75 GKFKFEQEKKAKEAKKKS--HQTEVKEVKMRYKIDEHDYQVRIGQATRFLKAGDKVKCTV 132
Query: 69 NLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNKA-LLQKAQE 124
+GRE + N+A L+ R D+ E A + R+ RN+ + L P K L++K QE
Sbjct: 133 IFRGREIQHTNLAESLLARMAKDLEEPAEVQQAPKREGRNMIMFLTPRKTPLIKKEQE 190
>sp|A2BZ21|IF3_PROM5 Translation initiation factor IF-3 OS=Prochlorococcus marinus
(strain MIT 9515) GN=infC PE=3 SV=1
Length = 195
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 75/117 (64%), Gaps = 3/117 (2%)
Query: 9 SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
KY++EQ+KK K +KKS ++ ++KE+KM Y ID+HDY VR+ A +FLK GDKVK V
Sbjct: 75 GKYKFEQEKKAKEARKKS--HQTEVKEVKMRYKIDKHDYDVRIGQAVRFLKAGDKVKCTV 132
Query: 69 NLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNKALLQKAQE 124
+GRE + N+A L+ R ND+ E + + + R+ RN+ + L P K L K +E
Sbjct: 133 IFRGREIQHSNLAETLLLRMANDLEEQSEVQQRPKREGRNMIMFLSPRKTPLIKKEE 189
>sp|A9BD81|IF3_PROM4 Translation initiation factor IF-3 OS=Prochlorococcus marinus
(strain MIT 9211) GN=infC PE=3 SV=1
Length = 202
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 71/114 (62%), Gaps = 3/114 (2%)
Query: 9 SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
K+++EQ+KK K +KKS ++ ++KE+KM Y IDQHDY VR+ A +FLK GDKVK V
Sbjct: 75 GKFKFEQEKKAKEAKKKS--HQTEVKEVKMRYKIDQHDYEVRINQATRFLKAGDKVKCTV 132
Query: 69 NLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNKALLQK 121
+GRE + N+A L+ R D+ E A + R+ RN+ + L P K L K
Sbjct: 133 IFRGREIQHTNLAESLLARMAKDLEEQAEVQQTPKREGRNMIMFLTPRKTPLIK 186
>sp|B0JKQ1|IF3_MICAN Translation initiation factor IF-3 OS=Microcystis aeruginosa
(strain NIES-843) GN=infC PE=3 SV=1
Length = 176
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 72/109 (66%), Gaps = 3/109 (2%)
Query: 9 SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
KY++EQ+KK + +KK + D+KE+KM Y ID+HDY+VR+ A++FLK GDKVK +
Sbjct: 70 GKYKFEQEKKAREAKKKQ--HTADIKEVKMRYKIDEHDYNVRVNQAQRFLKAGDKVKATI 127
Query: 69 NLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNK 116
+GRE + N+A EL+ R D+ ++A + ++ RN+ ++L P K
Sbjct: 128 TFRGREIQHSNLAEELLARMAKDLQDVAEVQQAPKKEGRNMMMMLSPKK 176
>sp|Q46IH3|IF3_PROMT Translation initiation factor IF-3 OS=Prochlorococcus marinus
(strain NATL2A) GN=infC PE=3 SV=1
Length = 202
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 74/117 (63%), Gaps = 4/117 (3%)
Query: 10 KYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVN 69
K+++EQ+KK K +KKS ++ ++KE+KM Y IDQHDY VR+ A +FLK GDKVK V
Sbjct: 76 KFKFEQEKKAKEAKKKS--HQTEVKEVKMRYKIDQHDYQVRISQATRFLKAGDKVKCTVI 133
Query: 70 LKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNKA-LLQKAQE 124
+GRE + +A L++R D+ E A + R+ RN+ + L P K LL+K E
Sbjct: 134 FRGREIQHTALAETLLKRMAKDLEEKAEVQQSPKREGRNMIMFLTPRKTPLLKKESE 190
>sp|P72874|IF3_SYNY3 Translation initiation factor IF-3 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=infC PE=3 SV=1
Length = 177
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 69/109 (63%), Gaps = 3/109 (2%)
Query: 9 SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
KY++EQ+KK + +KK + D+KE+KM Y ID+HDY VR+ A++FLK GDKVK V
Sbjct: 70 GKYKFEQEKKAREAKKKQ--HTADVKEVKMRYKIDEHDYQVRINQAKRFLKAGDKVKATV 127
Query: 69 NLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNK 116
N +GRE + ++A EL+ R D+ A + R+ RN+ + L P K
Sbjct: 128 NFRGREIQHAHLAKELLDRMATDLATEADIQQAPKREGRNMMMFLSPKK 176
>sp|Q89WH7|IF3_BRAJA Translation initiation factor IF-3 OS=Bradyrhizobium japonicum
(strain USDA 110) GN=infC PE=3 SV=1
Length = 179
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 66/107 (61%), Gaps = 3/107 (2%)
Query: 9 SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
KY+Y QKK +K+ +++KE+K+ ID HDY V+++A ++F ++GDKVK+ +
Sbjct: 74 GKYKYSAQKKAAEARKRQKT--VEIKEIKLRPMIDDHDYDVKMRAMQRFFEEGDKVKITL 131
Query: 69 NLKGRENEFRNIAIELIRRFQNDVGELAS-EENKNFRDRNIFIILVP 114
+GRE + I +L+ + + DV ELA E++ F R + ++L P
Sbjct: 132 RYRGREMAHQEIGTKLLDKIKTDVAELAKVEQDARFEGRQVVMVLAP 178
>sp|Q6G1I3|IF3_BARQU Translation initiation factor IF-3 OS=Bartonella quintana (strain
Toulouse) GN=infC PE=3 SV=1
Length = 172
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 66/108 (61%), Gaps = 3/108 (2%)
Query: 8 LSKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVI 67
L K +Y+ QKK +KK +++KE+KM N+D HDY V+LKA +F+ +GDKVK+
Sbjct: 66 LGKLKYQTQKKAAEIRKKQKV--IEIKEIKMRPNVDVHDYEVKLKAIHRFIGNGDKVKIT 123
Query: 68 VNLKGRENEFRNIAIELIRRFQNDVGELAS-EENKNFRDRNIFIILVP 114
+ +GRE +++ ++L++R + D E+A E R + +++ P
Sbjct: 124 LRFRGREMAHQDLGLKLLQRVKEDTSEIAKIEAEPKLEGRQMMMVIAP 171
>sp|A8G7E2|IF3_PROM2 Translation initiation factor IF-3 OS=Prochlorococcus marinus
(strain MIT 9215) GN=infC PE=3 SV=1
Length = 190
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 9 SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
KY++EQ+KK K +KKS ++ ++KE+KM Y ID+HDY VR+ A KFLK GDKVK V
Sbjct: 75 GKYKFEQEKKAKEARKKS--HQTEVKEVKMRYKIDKHDYDVRIGQATKFLKSGDKVKCTV 132
Query: 69 NLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNKALLQK 121
+GRE + N+A L+ + +D+ E + + K R+ RN+ + L P K+ L K
Sbjct: 133 IFRGREIQHSNLAETLLLKMASDLEEQSEVQQKPKREGRNMIMFLSPRKSPLIK 186
>sp|B7JYL4|IF3_CYAP8 Translation initiation factor IF-3 OS=Cyanothece sp. (strain PCC
8801) GN=infC PE=3 SV=1
Length = 176
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 68/109 (62%), Gaps = 3/109 (2%)
Query: 9 SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
KY++EQ+KK + + K + D+KE+KM Y I + DY+VR+ A++FLK GDKVK V
Sbjct: 70 GKYKFEQEKKAR--EAKKKQHTADVKEVKMRYKIGESDYNVRVNQAKRFLKSGDKVKATV 127
Query: 69 NLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNK 116
+GRE + N+A EL+ R D+ ELA + R+ RN+ + L P K
Sbjct: 128 TFRGREIQHANLAQELLERMAKDLEELAEIQQAPKREGRNMMMFLTPKK 176
>sp|A1UUD5|IF3_BARBK Translation initiation factor IF-3 OS=Bartonella bacilliformis
(strain ATCC 35685 / KC583) GN=infC PE=3 SV=1
Length = 173
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 67/108 (62%), Gaps = 3/108 (2%)
Query: 8 LSKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVI 67
L K +Y+ QKK +KK +++KE+K+ N+D HDY V+LKA +F++ G+KVK+
Sbjct: 66 LGKLKYQNQKKAAETRKKQKI--IEIKEIKLRPNVDVHDYGVKLKAIHRFIEHGNKVKIT 123
Query: 68 VNLKGRENEFRNIAIELIRRFQNDVGELAS-EENKNFRDRNIFIILVP 114
+ +GRE +++ ++L+ R + DV E+A E +R + +++ P
Sbjct: 124 LRFRGREMAHQDLGVKLLERMKEDVSEIAKIESEPKLENRQMMMVIAP 171
>sp|A2C600|IF3_PROM3 Translation initiation factor IF-3 OS=Prochlorococcus marinus
(strain MIT 9303) GN=infC PE=3 SV=1
Length = 219
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 72/115 (62%), Gaps = 3/115 (2%)
Query: 9 SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
K+++EQ+KK K +KKS ++ ++KE+KM Y IDQHDY+VR+ A +FLK GDKVK V
Sbjct: 75 GKFKFEQEKKAKEAKKKS--HQTEVKEVKMRYKIDQHDYNVRIGQAVRFLKAGDKVKCTV 132
Query: 69 NLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNKALLQKA 122
+GRE + +A L+RR D+ E A + R+ RN+ + L P K L K
Sbjct: 133 IFRGREIQHTALAETLLRRMAKDLEEQAEIQQAPKREGRNMIMFLTPRKTPLIKT 187
>sp|Q7TV76|IF3_PROMM Translation initiation factor IF-3 OS=Prochlorococcus marinus
(strain MIT 9313) GN=infC PE=3 SV=1
Length = 219
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 72/115 (62%), Gaps = 3/115 (2%)
Query: 9 SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
K+++EQ+KK K +KKS ++ ++KE+KM Y IDQHDY+VR+ A +FLK GDKVK V
Sbjct: 75 GKFKFEQEKKAKEAKKKS--HQTEVKEVKMRYKIDQHDYNVRIGQAVRFLKAGDKVKCTV 132
Query: 69 NLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNKALLQKA 122
+GRE + +A L+RR D+ E A + R+ RN+ + L P K L K
Sbjct: 133 IFRGREIQHTALAETLLRRMAKDLEEQAEIQQAPKREGRNMIMFLTPRKTPLIKT 187
>sp|Q8EPF5|IF3_OCEIH Translation initiation factor IF-3 OS=Oceanobacillus iheyensis
(strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831)
GN=infC PE=3 SV=2
Length = 172
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 65/107 (60%), Gaps = 3/107 (2%)
Query: 9 SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
KYR+EQQKK+K +KK +++KE++ I HD+ +LK ARKFL+ GDKVK V
Sbjct: 63 GKYRFEQQKKEKEARKKQKV--INVKEVRFTPGIGDHDFETKLKNARKFLEKGDKVKAAV 120
Query: 69 NLKGRENEFRNIAIELIRRFQNDVGELASEENK-NFRDRNIFIILVP 114
+GR + + E++ RF +V +L + E K RN+F+++ P
Sbjct: 121 RFRGRAITHKELGREVLDRFAEEVKDLGTIETKPKMEGRNMFMMVAP 167
>sp|Q3B0M2|IF3_SYNS9 Translation initiation factor IF-3 OS=Synechococcus sp. (strain
CC9902) GN=infC PE=3 SV=1
Length = 217
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 71/113 (62%), Gaps = 3/113 (2%)
Query: 10 KYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVN 69
K+++EQ+KK K +KKS ++ ++KE+KM Y ID HDY VR+ A++FLK GDKVK V
Sbjct: 76 KFKFEQEKKAKEAKKKS--HQTEVKEVKMRYKIDSHDYDVRIGQAQRFLKAGDKVKCTVI 133
Query: 70 LKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNKALLQK 121
+GRE + +A L+RR D+ E A + R+ RN+ + L P K L K
Sbjct: 134 FRGREIQHTALAEVLLRRMAKDLEEKAEIQQSPKREGRNMIMFLTPRKTPLLK 186
>sp|Q6G570|IF3_BARHE Translation initiation factor IF-3 OS=Bartonella henselae (strain
ATCC 49882 / Houston 1) GN=infC PE=3 SV=1
Length = 172
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 65/106 (61%), Gaps = 3/106 (2%)
Query: 8 LSKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVI 67
L K +Y+ QKK +KK +++KE+KM N+D HDY V+LKA +F+ +GDKVK+
Sbjct: 66 LGKLKYQTQKKAAETRKKQKV--IEIKEIKMRPNVDVHDYGVKLKAIHRFIGNGDKVKIT 123
Query: 68 VNLKGRENEFRNIAIELIRRFQNDVGELAS-EENKNFRDRNIFIIL 112
+ +GRE +++ ++L++R + D E+A E R + +++
Sbjct: 124 LRFRGREMAHQDLGLKLLQRVKEDTSEIAKIESEPKLEGRQMMMVI 169
>sp|Q812P6|IF3_BACCR Translation initiation factor IF-3 OS=Bacillus cereus (strain ATCC
14579 / DSM 31) GN=infC PE=3 SV=1
Length = 167
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 66/107 (61%), Gaps = 3/107 (2%)
Query: 9 SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
K+R+EQQKK+K Q+K + +KE+++ ID+HD++ +L+ A KFL+ GDKVK +
Sbjct: 59 GKFRFEQQKKEKEQRKNQKV--ISMKEVRLSPTIDEHDFNTKLRNAIKFLEKGDKVKASI 116
Query: 69 NLKGRENEFRNIAIELIRRFQNDVGELASEENK-NFRDRNIFIILVP 114
KGR + I ++ RF E+++ E+K R++F++L P
Sbjct: 117 RFKGRAITHKEIGQRVLDRFSEACAEVSTVESKPKMEGRSMFLVLAP 163
>sp|Q9MS97|IF3C_GALSU Translation initiation factor IF-3, chloroplastic OS=Galdieria
sulphuraria GN=infC PE=3 SV=1
Length = 181
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 72/111 (64%), Gaps = 5/111 (4%)
Query: 9 SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
K+++ Q+KK + +KK +++ +KE+KM Y I+ HDY VR+ A KFLK G+KVK+ +
Sbjct: 74 GKFKFAQEKKSREAKKKQ--HQVTVKEIKMRYKIEDHDYQVRINQAIKFLKLGNKVKISL 131
Query: 69 NLKGRENEFRNIAIELIRRFQNDVGELASEENKNF--RDRNIFIILVPNKA 117
KGRE ++ ++A +LI + + + LA E K F +NI+I+L+P K
Sbjct: 132 TFKGREIQYIDLAEKLIEKIIHSLSSLAEHE-KVFDKEGKNIYIMLLPKKT 181
>sp|Q5LQ58|IF3_RUEPO Translation initiation factor IF-3 OS=Ruegeria pomeroyi (strain
ATCC 700808 / DSM 15171 / DSS-3) GN=infC PE=3 SV=1
Length = 182
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 64/108 (59%), Gaps = 3/108 (2%)
Query: 8 LSKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVI 67
KY+YEQQK++ +KK +++KE+K N D HDY V+++ KFL++GDKVKV
Sbjct: 73 FGKYKYEQQKRESEARKKQKI--IEVKEVKFRPNTDTHDYEVKMRNVYKFLENGDKVKVT 130
Query: 68 VNLKGRENEFRNIAIELIRRFQNDVGELASEEN-KNFRDRNIFIILVP 114
+ +GRE +N+ EL+ R DV E+ EN R + +++ P
Sbjct: 131 LRFRGREMAHQNLGRELLERVAEDVKEMGKIENMPKMEGRQMIMMIGP 178
>sp|Q7TU24|IF3_PROMP Translation initiation factor IF-3 OS=Prochlorococcus marinus
subsp. pastoris (strain CCMP1986 / MED4) GN=infC PE=3
SV=1
Length = 190
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 62/98 (63%), Gaps = 1/98 (1%)
Query: 28 ANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRR 87
+++ ++KE+KM Y ID+HDY VR+ A +FLK GDKVK V +GRE + N+A L+ +
Sbjct: 92 SHQTEVKEVKMRYKIDKHDYDVRIGQAVRFLKSGDKVKCTVFFRGREIQHSNLAETLLLK 151
Query: 88 FQNDVGELASEENKNFRD-RNIFIILVPNKALLQKAQE 124
ND+ E + + + R+ RN+ + L P K L K +E
Sbjct: 152 MANDLEEQSEVQQRPKREGRNMIMFLSPRKTPLIKKEE 189
>sp|Q633M1|IF3_BACCZ Translation initiation factor IF-3 OS=Bacillus cereus (strain ZK /
E33L) GN=infC PE=3 SV=2
Length = 167
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 66/107 (61%), Gaps = 3/107 (2%)
Query: 9 SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
K+R+EQQKK+K Q+K + +KE+++ ID+HD++ +L+ A KFL+ GDKVK +
Sbjct: 59 GKFRFEQQKKEKEQRKNQKV--ISMKEVRLSPTIDEHDFNTKLRNAIKFLEKGDKVKASI 116
Query: 69 NLKGRENEFRNIAIELIRRFQNDVGELASEENK-NFRDRNIFIILVP 114
KGR + I ++ RF E+++ E+K R++F++L P
Sbjct: 117 RFKGRAITHKEIGQRVLDRFSEACAEVSTIESKPKMEGRSMFLVLAP 163
>sp|Q72ZG2|IF3_BACC1 Translation initiation factor IF-3 OS=Bacillus cereus (strain ATCC
10987) GN=infC PE=3 SV=2
Length = 167
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 66/107 (61%), Gaps = 3/107 (2%)
Query: 9 SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
K+R+EQQKK+K Q+K + +KE+++ ID+HD++ +L+ A KFL+ GDKVK +
Sbjct: 59 GKFRFEQQKKEKEQRKNQKV--ISMKEVRLSPTIDEHDFNTKLRNAIKFLEKGDKVKASI 116
Query: 69 NLKGRENEFRNIAIELIRRFQNDVGELASEENK-NFRDRNIFIILVP 114
KGR + I ++ RF E+++ E+K R++F++L P
Sbjct: 117 RFKGRAITHKEIGQRVLDRFSEACAEVSTIESKPKMEGRSMFLVLAP 163
>sp|Q81L15|IF3_BACAN Translation initiation factor IF-3 OS=Bacillus anthracis GN=infC
PE=3 SV=2
Length = 167
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 66/107 (61%), Gaps = 3/107 (2%)
Query: 9 SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
K+R+EQQKK+K Q+K + +KE+++ ID+HD++ +L+ A KFL+ GDKVK +
Sbjct: 59 GKFRFEQQKKEKEQRKNQKV--ISMKEVRLSPTIDEHDFNTKLRNAIKFLEKGDKVKASI 116
Query: 69 NLKGRENEFRNIAIELIRRFQNDVGELASEENK-NFRDRNIFIILVP 114
KGR + I ++ RF E+++ E+K R++F++L P
Sbjct: 117 RFKGRAITHKEIGQRVLDRFSEACAEVSTIESKPKMEGRSMFLVLAP 163
>sp|A9ILC8|IF3_BART1 Translation initiation factor IF-3 OS=Bartonella tribocorum (strain
CIP 105476 / IBS 506) GN=infC PE=3 SV=1
Length = 172
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 8 LSKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVI 67
L K +Y+ QKK +KK +++KE+K+ N+D HDY V+LKA +F+ GDKVK+
Sbjct: 66 LGKLKYQTQKKAAETRKKQKV--IEIKEIKVRPNVDVHDYGVKLKAIHRFIDHGDKVKIT 123
Query: 68 VNLKGRENEFRNIAIELIRRFQNDVGELAS-EENKNFRDRNIFIILVP 114
+ +GRE +++ ++L++R + D E+A E R + +++ P
Sbjct: 124 LRFRGREMAHQDLGLKLLQRVKEDTSEIAKIELEPKLEGRQMMMVIAP 171
>sp|A5GQ34|IF3_SYNR3 Translation initiation factor IF-3 OS=Synechococcus sp. (strain
RCC307) GN=infC PE=3 SV=1
Length = 215
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 71/114 (62%), Gaps = 3/114 (2%)
Query: 9 SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
K+++EQ+KK K +KKS ++ ++KE+KM Y ID HDY VR+ A +FLK GDKVK V
Sbjct: 75 GKFKFEQEKKAKEAKKKS--HQTEVKEVKMRYKIDAHDYQVRIGQAVRFLKAGDKVKCTV 132
Query: 69 NLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVPNKALLQK 121
+GRE + +A +L+ R D+ E A + R+ RN+ + L P K LQK
Sbjct: 133 IFRGREIQHTALAEKLLMRMAKDLEESAEVQQPPKREGRNMIMFLGPRKTPLQK 186
>sp|P55872|IF3_BACSU Translation initiation factor IF-3 OS=Bacillus subtilis (strain
168) GN=infC PE=3 SV=3
Length = 173
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 66/107 (61%), Gaps = 3/107 (2%)
Query: 9 SKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIV 68
K+R+EQQKK+K +K ++LKE+++ ID+HD++ +L+ A KFL+ GDKVK +
Sbjct: 64 GKFRFEQQKKEKEARKNQKI--INLKEVRLSPTIDEHDFNTKLRNAIKFLEKGDKVKASI 121
Query: 69 NLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRD-RNIFIILVP 114
KGR + I ++ RF E+A+ E K D R++F++L P
Sbjct: 122 RFKGRAITHKEIGQRVLDRFSEACAEVATVETKPKMDGRSMFLMLAP 168
>sp|Q92ST3|IF3_RHIME Translation initiation factor IF-3 OS=Rhizobium meliloti (strain
1021) GN=infC PE=3 SV=2
Length = 177
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 64/108 (59%), Gaps = 3/108 (2%)
Query: 8 LSKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVI 67
L K +Y QKK +KK +++KE+KM NID HDY V++KA +F ++GDKVKV
Sbjct: 71 LGKLKYANQKKAAEARKKQKI--VEIKEIKMRPNIDTHDYEVKMKAMNRFFEEGDKVKVT 128
Query: 68 VNLKGRENEFRNIAIELIRRFQNDVGELAS-EENKNFRDRNIFIILVP 114
+ +GRE + + ++L+ + ++D E+A E R + ++L P
Sbjct: 129 LKFRGREMAHQELGMKLLMQVKDDTQEIAKVEAEPKLEGRQMMMVLAP 176
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,314,322
Number of Sequences: 539616
Number of extensions: 1900570
Number of successful extensions: 7805
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 7257
Number of HSP's gapped (non-prelim): 376
length of query: 141
length of database: 191,569,459
effective HSP length: 105
effective length of query: 36
effective length of database: 134,909,779
effective search space: 4856752044
effective search space used: 4856752044
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)