Query 044576
Match_columns 141
No_of_seqs 111 out of 985
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 04:39:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044576.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044576hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0290 InfC Translation initi 100.0 5.2E-49 1.1E-53 305.1 12.5 115 2-118 61-176 (176)
2 CHL00199 infC translation init 100.0 2.6E-44 5.5E-49 282.0 12.8 113 1-115 66-179 (182)
3 TIGR00168 infC translation ini 100.0 6.1E-44 1.3E-48 276.4 13.5 113 2-116 50-164 (165)
4 PRK00028 infC translation init 100.0 3.8E-43 8.3E-48 274.5 13.5 115 1-117 61-176 (177)
5 PF00707 IF3_C: Translation in 100.0 3.1E-31 6.7E-36 185.8 9.0 86 31-116 2-88 (88)
6 PF14877 mIF3: Mitochondrial t 96.8 0.0019 4.1E-08 51.2 4.4 44 31-74 126-170 (181)
7 PF05763 DUF835: Protein of un 47.1 68 0.0015 23.9 5.6 68 40-115 53-121 (136)
8 PF14689 SPOB_a: Sensor_kinase 43.0 53 0.0011 21.1 3.9 39 44-97 20-58 (62)
9 PF07710 P53_tetramer: P53 tet 37.7 30 0.00064 21.3 1.9 26 62-93 7-32 (42)
10 PF08203 RNA_polI_A14: Yeast R 36.9 54 0.0012 22.6 3.3 31 66-96 3-33 (76)
11 PF11548 Receptor_IA-2: Protei 33.5 74 0.0016 22.7 3.7 51 72-122 10-61 (91)
12 PF11325 DUF3127: Domain of un 31.3 36 0.00079 23.7 1.8 19 58-76 53-71 (84)
13 COG4841 Uncharacterized protei 29.6 44 0.00096 23.9 2.0 18 58-75 19-36 (95)
14 PF14258 DUF4350: Domain of un 24.1 97 0.0021 19.6 2.8 30 36-66 39-68 (70)
15 COG2260 Predicted Zn-ribbon RN 24.1 44 0.00095 22.0 1.1 13 8-20 41-53 (59)
16 PF09837 DUF2064: Uncharacteri 23.9 2.8E+02 0.0061 20.0 7.2 73 35-113 34-106 (122)
17 TIGR00620 sporelyase spore pho 21.8 2E+02 0.0044 23.1 4.7 46 45-94 68-117 (199)
18 PRK13992 minC septum formation 20.6 1.8E+02 0.0038 23.1 4.2 28 46-75 27-54 (205)
19 KOG1708 Mitochondrial/chloropl 20.4 40 0.00088 27.7 0.4 25 56-81 155-179 (236)
No 1
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.2e-49 Score=305.09 Aligned_cols=115 Identities=35% Similarity=0.666 Sum_probs=112.3
Q ss_pred eEEEeecchhHHHHHHHHHHhhhhccCCCcceeeEEEecCCCcchHHHHHHHHHHHHhCCCeEEEEEEeCCCccccHHHH
Q 044576 2 LFFYFFLSKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIA 81 (141)
Q Consensus 2 VckimDygK~kYe~~Kk~ke~kKkq~~~~~~~KEIrl~~~I~~HDl~~K~kqa~~FL~~G~kVkv~l~frGRe~~~~e~g 81 (141)
||||||||||+||++|+++|++|+| +.+++|||+|+|+||+|||++|++++++||++||+|||+|+|||||++|+|+|
T Consensus 61 VcKImDYGKfkye~~KK~kEakKkQ--k~i~vKEik~rp~Id~hD~~~K~k~~~rFLe~GdkVKvtirfrGRe~~h~elG 138 (176)
T COG0290 61 VCKIMDYGKFKYEQKKKAKEAKKKQ--KQIQVKEIKLRPKIDEHDYETKLKNARRFLEKGDKVKVTIRFRGREMAHQELG 138 (176)
T ss_pred eeEeeeccchHHHHHHHHHHHhhcC--ceEEEEEEEeecCcCcchHHHHHHHHHHHHHCCCeEEEEEEEechhhhhHHHH
Confidence 8999999999999999999999999 78999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccccc-cCCCcceeEEEEecCcch
Q 044576 82 IELIRRFQNDVGELASEEN-KNFRDRNIFIILVPNKAL 118 (141)
Q Consensus 82 ~~ll~ri~~~l~~~~~ve~-~~~eG~~~~~~l~P~k~~ 118 (141)
.++|++|.++|+++|.+|+ |+++|++|+|+|+|++++
T Consensus 139 ~~~l~r~~~~~~~~~~ve~~pk~egr~m~m~laPkkkk 176 (176)
T COG0290 139 VKVLERVAEDLEDIAKVESEPKMEGRQMIMVLAPKKKK 176 (176)
T ss_pred HHHHHHHHHHhhhhheeecccccCCceEEEEEcccCCC
Confidence 9999999999999999998 799999999999998753
No 2
>CHL00199 infC translation initiation factor 3; Provisional
Probab=100.00 E-value=2.6e-44 Score=282.05 Aligned_cols=113 Identities=36% Similarity=0.632 Sum_probs=110.0
Q ss_pred CeEEEeecchhHHHHHHHHHHhhhhccCCCcceeeEEEecCCCcchHHHHHHHHHHHHhCCCeEEEEEEeCCCccccHHH
Q 044576 1 MLFFYFFLSKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNI 80 (141)
Q Consensus 1 ~VckimDygK~kYe~~Kk~ke~kKkq~~~~~~~KEIrl~~~I~~HDl~~K~kqa~~FL~~G~kVkv~l~frGRe~~~~e~ 80 (141)
.||||||||||+||++|+.++++|+| +.+++|||+|+|+|++|||++|++||++||++||+|+|+|+|||||++|.|+
T Consensus 66 PVCKImdygK~kye~~KK~keakKkq--~~~~~KEirl~~~I~~hDl~~K~k~~~kFL~~G~kVkv~i~frGRE~~~~e~ 143 (182)
T CHL00199 66 PVCRIIDYGKYKFTQEKRAKEAKKKQ--HNSSIKEVKMRYKIEEHDYKVRINQAFKFLQAGDKVKATLTFRGREIQHLNL 143 (182)
T ss_pred CeEEEeehHHHHHHHHHHHHHHHhcc--CCccceEEEecCCCCccHHHHHHHHHHHHHHCCCEEEEEEEEchhHHhhHHH
Confidence 38999999999999999999999999 6789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccc-cCCCcceeEEEEecC
Q 044576 81 AIELIRRFQNDVGELASEEN-KNFRDRNIFIILVPN 115 (141)
Q Consensus 81 g~~ll~ri~~~l~~~~~ve~-~~~eG~~~~~~l~P~ 115 (141)
|.++|++|.++|+++|.+|. |+++|++|+|+|+|+
T Consensus 144 g~~ll~r~~~~l~~~a~ve~~pk~eGr~m~~~l~P~ 179 (182)
T CHL00199 144 AINLLNKMAADLSSIAEIQQPPSQDGRNMIMILSPK 179 (182)
T ss_pred HHHHHHHHHHHhhhhheeecCccccCCEEEEEEecC
Confidence 99999999999999999997 799999999999996
No 3
>TIGR00168 infC translation initiation factor IF-3. render its expression particularly sensitive to excess of its gene product IF-3 thereby regulating its own expression
Probab=100.00 E-value=6.1e-44 Score=276.41 Aligned_cols=113 Identities=37% Similarity=0.600 Sum_probs=109.8
Q ss_pred eEEEeecchhHHHHHHHHHHhhhhccCCCcceeeEEEecCCCcchHHHHHHHHHHHHhCCCeEEEEEEeCCCccccHHHH
Q 044576 2 LFFYFFLSKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIA 81 (141)
Q Consensus 2 VckimDygK~kYe~~Kk~ke~kKkq~~~~~~~KEIrl~~~I~~HDl~~K~kqa~~FL~~G~kVkv~l~frGRe~~~~e~g 81 (141)
||||||||||+||++|++++++++| +.+++|||+|+|+|++|||++|++||++||++||+|+|+|+|||||++|+|+|
T Consensus 50 VckImdy~k~~ye~~KK~ke~kkkq--~~~~~KEi~~~~~I~~hDl~~K~k~~~~FL~kG~kVkv~l~frgRe~~~~e~g 127 (165)
T TIGR00168 50 VCKIMDYGKYKYEQEKKKKEAKKNQ--KIIQVKEVKMRPTIDEHDLQFKLKQAIRFLEKGDKVKFTVRFRGRESTHIELG 127 (165)
T ss_pred EEEEeeHHHHHHHHHHHHHHHHhcC--CCCcceeEEEcCCCChhhHHHHHHHHHHHHHCCCeEEEEEEEcCCcccCHHHH
Confidence 8999999999999999999999998 77899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccccc-c-CCCcceeEEEEecCc
Q 044576 82 IELIRRFQNDVGELASEEN-K-NFRDRNIFIILVPNK 116 (141)
Q Consensus 82 ~~ll~ri~~~l~~~~~ve~-~-~~eG~~~~~~l~P~k 116 (141)
.++|++|.++|+++|.+|. | +++|++|+|+|+|++
T Consensus 128 ~~ll~~i~~~l~~~~~~e~~p~~~eG~~~~~~l~P~~ 164 (165)
T TIGR00168 128 EKVLDRFYTDVADVAEVEKPPTKSEGRMMSMLLAPKK 164 (165)
T ss_pred HHHHHHHHHHhhhhhheecCcccccCCEEEEEEEeCC
Confidence 9999999999999999987 7 899999999999974
No 4
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=100.00 E-value=3.8e-43 Score=274.54 Aligned_cols=115 Identities=37% Similarity=0.670 Sum_probs=110.9
Q ss_pred CeEEEeecchhHHHHHHHHHHhhhhccCCCcceeeEEEecCCCcchHHHHHHHHHHHHhCCCeEEEEEEeCCCccccHHH
Q 044576 1 MLFFYFFLSKYRYEQQKKKKGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNI 80 (141)
Q Consensus 1 ~VckimDygK~kYe~~Kk~ke~kKkq~~~~~~~KEIrl~~~I~~HDl~~K~kqa~~FL~~G~kVkv~l~frGRe~~~~e~ 80 (141)
-||||||||||+||++|++++++++| +.+.+|||+|+|+|++|||++|++||++||++||+|+|+|+|||||++|.|+
T Consensus 61 PVckI~dy~k~~ye~~kK~ke~kkkq--~~~~~KEirl~~~I~~hDl~~K~k~~~kFL~kG~kVkv~l~frgre~~~~e~ 138 (177)
T PRK00028 61 PVCKIMDYGKFKYEQKKKQKEAKKKQ--KVIEVKEIKFRPKIDEHDYETKLKHARRFLEKGDKVKVTLRFRGREIAHKEL 138 (177)
T ss_pred CEEEEEeHHHHHHHHHHHHHHhhhcc--CccceeEEEEccCCChhHHHHHHHHHHHHHHCCCEEEEEEEEcCCcccCHHH
Confidence 38999999999999999999999988 6789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccc-cCCCcceeEEEEecCcc
Q 044576 81 AIELIRRFQNDVGELASEEN-KNFRDRNIFIILVPNKA 117 (141)
Q Consensus 81 g~~ll~ri~~~l~~~~~ve~-~~~eG~~~~~~l~P~k~ 117 (141)
|.++|++|.+.|+++|.+|. |+++|++|+|+|+|+++
T Consensus 139 g~~vl~~v~~~l~~~~~~e~~p~~~G~~~~~~l~P~k~ 176 (177)
T PRK00028 139 GMELLERVAEDLEDIAKVEQEPKMEGRQMIMVLAPKKK 176 (177)
T ss_pred HHHHHHHHHHHcchhhheeccccccCCEEEEEEEeCCC
Confidence 99999999999999999987 79999999999999854
No 5
>PF00707 IF3_C: Translation initiation factor IF-3, C-terminal domain; InterPro: IPR019815 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2IFE_A 1TIG_A 2CRQ_A.
Probab=99.97 E-value=3.1e-31 Score=185.83 Aligned_cols=86 Identities=33% Similarity=0.645 Sum_probs=79.9
Q ss_pred cceeeEEEecCCCcchHHHHHHHHHHHHhCCCeEEEEEEeCCCccccHHHHHHHHHHHHHHhcccccccc-cCCCcceeE
Q 044576 31 MDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELASEEN-KNFRDRNIF 109 (141)
Q Consensus 31 ~~~KEIrl~~~I~~HDl~~K~kqa~~FL~~G~kVkv~l~frGRe~~~~e~g~~ll~ri~~~l~~~~~ve~-~~~eG~~~~ 109 (141)
+++|||+|+|+|++|||++|+++|++||++||+|+|+|+||||++++.|.|.++|++|.++|+++|.++. |+++|++|+
T Consensus 2 ~~~KEi~~~~~I~~hDl~~K~k~~~~fL~kG~~Vkv~i~~rgr~~~~~e~~~~~l~~i~~~l~~~~~~~~~~~~~g~~~~ 81 (88)
T PF00707_consen 2 VKVKEIRFSPNIDEHDLETKLKQAKKFLEKGHKVKVVIRFRGREMAHPELGEEVLERIIEELKDVGKVEKKPKMEGKQMS 81 (88)
T ss_dssp SEEEEEEEETT--HHHHHHHHHHHHHHHHTTEEEEEEEE-SSTTTTHHHHHHHHHHHHHHHCTTTEEEEEEEEECCCCEE
T ss_pred ceEEEEEEecCcChhHHHHHHHHHHHHHHCCCEEEEEEEecCccccchHHHHHHHHHHHHHHhhhcEEeecccccCCEEE
Confidence 6799999999999999999999999999999999999999999999999999999999999999999987 689999999
Q ss_pred EEEecCc
Q 044576 110 IILVPNK 116 (141)
Q Consensus 110 ~~l~P~k 116 (141)
|+|.|++
T Consensus 82 ~~l~P~k 88 (88)
T PF00707_consen 82 MILSPKK 88 (88)
T ss_dssp EEEEES-
T ss_pred EEEEeCC
Confidence 9999985
No 6
>PF14877 mIF3: Mitochondrial translation initiation factor
Probab=96.79 E-value=0.0019 Score=51.19 Aligned_cols=44 Identities=25% Similarity=0.442 Sum_probs=37.7
Q ss_pred cceeeEEEecCCCcchHH-HHHHHHHHHHhCCCeEEEEEEeCCCc
Q 044576 31 MDLKELKMGYNIDQHDYS-VRLKAARKFLKDGDKVKVIVNLKGRE 74 (141)
Q Consensus 31 ~~~KEIrl~~~I~~HDl~-~K~kqa~~FL~~G~kVkv~l~frGRe 74 (141)
..+|.|+++|.|.++||. -|..-+..-|.+|++|-+.|-=+++.
T Consensus 126 s~~K~i~isW~Is~~DL~~QK~~EI~~~LkKG~kv~iyi~dK~~~ 170 (181)
T PF14877_consen 126 SSTKQIKISWQISPDDLKNQKANEIEKRLKKGEKVNIYIDDKDNS 170 (181)
T ss_pred cccceEEEEEeechHHHHHHHHHHHHHHHhCCCeEEEEEcCCCCC
Confidence 569999999999999996 58889999999999999977645443
No 7
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=47.06 E-value=68 Score=23.94 Aligned_cols=68 Identities=19% Similarity=0.367 Sum_probs=54.2
Q ss_pred cCCCcchHHHHHHHHHHHHhC-CCeEEEEEEeCCCccccHHHHHHHHHHHHHHhcccccccccCCCcceeEEEEecC
Q 044576 40 YNIDQHDYSVRLKAARKFLKD-GDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRDRNIFIILVPN 115 (141)
Q Consensus 40 ~~I~~HDl~~K~kqa~~FL~~-G~kVkv~l~frGRe~~~~e~g~~ll~ri~~~l~~~~~ve~~~~eG~~~~~~l~P~ 115 (141)
-.|++.||..=..-+.+||++ |+. +|.+-|=|-.--+.|.+-+-+|...|.|++. +.|..+++++.|.
T Consensus 53 ~~I~Pt~L~~l~~~i~~fl~~~~~~---vViiD~lEYL~l~NgF~~v~KFL~~LkD~~~-----~~~~~lIl~~~~~ 121 (136)
T PF05763_consen 53 NAISPTNLHKLLDTIVRFLKENGNG---VVIIDGLEYLILENGFESVLKFLASLKDYAL-----LNNGTLILVVDPE 121 (136)
T ss_pred CccCchhhHHHHHHHHHHHHhCCCc---EEEEecHHHHHHHcCHHHHHHHHHHhHHHee-----ccCCEEEEEEChh
Confidence 389999999999999999999 666 5556888877778888888899999988873 3344577777764
No 8
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=43.03 E-value=53 Score=21.07 Aligned_cols=39 Identities=23% Similarity=0.362 Sum_probs=32.5
Q ss_pred cchHHHHHHHHHHHHhCCCeEEEEEEeCCCccccHHHHHHHHHHHHHHhccccc
Q 044576 44 QHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELAS 97 (141)
Q Consensus 44 ~HDl~~K~kqa~~FL~~G~kVkv~l~frGRe~~~~e~g~~ll~ri~~~l~~~~~ 97 (141)
-|||...+.-+..+|.-|. .|.+.+.++++.+++...+.
T Consensus 20 RHD~~NhLqvI~gllqlg~---------------~~~a~eYi~~~~~~~~~~s~ 58 (62)
T PF14689_consen 20 RHDFLNHLQVIYGLLQLGK---------------YEEAKEYIKELSKDLQQESE 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHTT----------------HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC---------------HHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999874 68889999999988876643
No 9
>PF07710 P53_tetramer: P53 tetramerisation motif; InterPro: IPR010991 The p53 protein is a tetrameric transcription factor that plays a central role in the prevention of neoplastic transformation []. Oligomerization appears to be essential for the tumour suppressing activity of p53. p53 can be divided into different functional domains: an N-terminal transactivation domain, a proline-rich domain, a DNA-binding domain (IPR008967 from INTERPRO), a tetramerisation domain and a C-terminal regulatory region. The tetramerisation domain of human p53 extends from residues 325 to 356, and has a 4-helical bundle fold. The tetramerisation domain is essential for DNA binding, protein-protein interactions, post-translational modifications, and p53 degradation [].; GO: 0051262 protein tetramerization; PDB: 3Q06_B 1SAL_B 1OLH_B 1AIE_A 1PES_D 1SAK_D 1SAE_B 2J11_D 1PET_A 1OLG_A ....
Probab=37.71 E-value=30 Score=21.28 Aligned_cols=26 Identities=19% Similarity=0.529 Sum_probs=19.3
Q ss_pred CeEEEEEEeCCCccccHHHHHHHHHHHHHHhc
Q 044576 62 DKVKVIVNLKGRENEFRNIAIELIRRFQNDVG 93 (141)
Q Consensus 62 ~kVkv~l~frGRe~~~~e~g~~ll~ri~~~l~ 93 (141)
|.=-++|.-||||. .++|.+|-+.|+
T Consensus 7 D~E~ftL~VrGRe~------yE~l~kine~LE 32 (42)
T PF07710_consen 7 DEEVFTLQVRGRER------YEMLKKINEALE 32 (42)
T ss_dssp CCCEEEEEEESHHH------HHHHHHHHHHHH
T ss_pred CCCEEEEEEecHHH------HHHHHHHHHHHH
Confidence 33357888899986 778888877665
No 10
>PF08203 RNA_polI_A14: Yeast RNA polymerase I subunit RPA14; InterPro: IPR013239 Saccharomyces cerevisiae RNA polymerase I (Pol I) is a complex consisting of 14 subunits. Subunit RPA14 forms part of a Pol I subcomplex consisting of RPA14 and and RPA43. The RPA14 and RPA43 heterodimer is proposed to play a role in the recruitment of Pol I to the promoter []. ; PDB: 2RF4_F.
Probab=36.92 E-value=54 Score=22.59 Aligned_cols=31 Identities=16% Similarity=0.446 Sum_probs=23.5
Q ss_pred EEEEeCCCccccHHHHHHHHHHHHHHhcccc
Q 044576 66 VIVNLKGRENEFRNIAIELIRRFQNDVGELA 96 (141)
Q Consensus 66 v~l~frGRe~~~~e~g~~ll~ri~~~l~~~~ 96 (141)
++|..+|++....+.+..+|++|++.-+.+.
T Consensus 3 v~i~~~~~~~v~k~ea~~fL~~FI~~~E~~~ 33 (76)
T PF08203_consen 3 VVIHVRGSQHVSKDEAEQFLTEFIDEKESIA 33 (76)
T ss_dssp -EEEESS-EE--HHHHHHHHHHHHHHHHSS-
T ss_pred eEEEecCcccCCHHHHHHHHHHHHHHHHHHh
Confidence 5678889988899999999999999888773
No 11
>PF11548 Receptor_IA-2: Protein-tyrosine phosphatase receptor IA-2; InterPro: IPR021613 IA-2 is a protein-tyrosine phosphatase receptor that upon exocytosis, the cytoplasmic domain is cleaved and moves to the nucleus where it enhances transcription of the insulin gene. The mature exodomain of IA-2 participates in adhesion to the extracellular matrix and is self-proteolyzed in vitro by reactive oxygen species which may be a new shedding mechanism. ; PDB: 2QT7_B 3N01_B 3N4W_B 3NG8_A.
Probab=33.48 E-value=74 Score=22.65 Aligned_cols=51 Identities=16% Similarity=0.111 Sum_probs=31.3
Q ss_pred CCccccHHHHHHHHHHHHHHhc-ccccccccCCCcceeEEEEecCcchhhhc
Q 044576 72 GRENEFRNIAIELIRRFQNDVG-ELASEENKNFRDRNIFIILVPNKALLQKA 122 (141)
Q Consensus 72 GRe~~~~e~g~~ll~ri~~~l~-~~~~ve~~~~eG~~~~~~l~P~k~~~~~~ 122 (141)
+++-...+.|..+|+.+.+.|. +-+..-.+...|..++.-+.|+.....++
T Consensus 10 ~nd~ls~~~G~~l~~~la~~l~l~s~~F~~i~V~g~avTFrv~~N~~n~taa 61 (91)
T PF11548_consen 10 GNDPLSWDEGSRLMEKLAELLHLPSSSFINISVVGPAVTFRVRPNNKNLTAA 61 (91)
T ss_dssp S-TT--HHHHHHHHHHHHHHHTS-GGGEEEEEEETTEEEEEE---TT---HH
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCcccceeeeecCceEEEEeccCcCCCCHH
Confidence 3444467899999999999876 33444456788999999999998665443
No 12
>PF11325 DUF3127: Domain of unknown function (DUF3127); InterPro: IPR021474 This bacterial family of proteins has no known function.
Probab=31.30 E-value=36 Score=23.75 Aligned_cols=19 Identities=47% Similarity=0.727 Sum_probs=16.8
Q ss_pred HhCCCeEEEEEEeCCCccc
Q 044576 58 LKDGDKVKVIVNLKGRENE 76 (141)
Q Consensus 58 L~~G~kVkv~l~frGRe~~ 76 (141)
+.-|+.|+|++..+|||-.
T Consensus 53 ~~~Gd~V~Vsf~i~~RE~~ 71 (84)
T PF11325_consen 53 FQVGDEVKVSFNIEGREWN 71 (84)
T ss_pred CCCCCEEEEEEEeeccEec
Confidence 5689999999999999864
No 13
>COG4841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.62 E-value=44 Score=23.92 Aligned_cols=18 Identities=33% Similarity=0.652 Sum_probs=15.3
Q ss_pred HhCCCeEEEEEEeCCCcc
Q 044576 58 LKDGDKVKVIVNLKGREN 75 (141)
Q Consensus 58 L~~G~kVkv~l~frGRe~ 75 (141)
|++|++|++.+|+-|-..
T Consensus 19 l~~g~~vrffvRyGG~~~ 36 (95)
T COG4841 19 LEEGNKVRFFVRYGGCSS 36 (95)
T ss_pred CCCCCEEEEEEEEcCccc
Confidence 689999999999888543
No 14
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=24.12 E-value=97 Score=19.64 Aligned_cols=30 Identities=13% Similarity=0.336 Sum_probs=20.1
Q ss_pred EEEecCCCcchHHHHHHHHHHHHhCCCeEEE
Q 044576 36 LKMGYNIDQHDYSVRLKAARKFLKDGDKVKV 66 (141)
Q Consensus 36 Irl~~~I~~HDl~~K~kqa~~FL~~G~kVkv 66 (141)
|-+.|...--| ..-++++.+|+++|++|=|
T Consensus 39 l~i~~~~~~~~-~~~~~~l~~~v~~G~~lvl 68 (70)
T PF14258_consen 39 LVIGPDLRLSE-PEEAEALLEWVEAGNTLVL 68 (70)
T ss_pred EEEeCCCCCCc-hHHHHHHHHHHHcCCEEEE
Confidence 44555533332 3456699999999999855
No 15
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=24.10 E-value=44 Score=22.05 Aligned_cols=13 Identities=38% Similarity=0.526 Sum_probs=10.9
Q ss_pred cchhHHHHHHHHH
Q 044576 8 LSKYRYEQQKKKK 20 (141)
Q Consensus 8 ygK~kYe~~Kk~k 20 (141)
||||++++++...
T Consensus 41 y~kYR~~lkk~~~ 53 (59)
T COG2260 41 YGKYRRELKKRLG 53 (59)
T ss_pred HHHHHHHHHHHhc
Confidence 8999999987754
No 16
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=23.92 E-value=2.8e+02 Score=19.97 Aligned_cols=73 Identities=11% Similarity=0.037 Sum_probs=50.7
Q ss_pred eEEEecCCCcchHHHHHHHHHHHHhCCCeEEEEEEeCCCccccHHHHHHHHHHHHHHhcccccccccCCCcceeEEEEe
Q 044576 35 ELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELASEENKNFRDRNIFIILV 113 (141)
Q Consensus 35 EIrl~~~I~~HDl~~K~kqa~~FL~~G~kVkv~l~frGRe~~~~e~g~~ll~ri~~~l~~~~~ve~~~~eG~~~~~~l~ 113 (141)
.+.+.+. ...||..||.+|-.-+..|+. .|++. |-.. +++-...|.+..+.|.....|-.|-.+|-..-+=+.
T Consensus 34 ~~~~~~Q-~g~dLG~Rm~~a~~~~~~g~~-~vvli--GsD~--P~l~~~~l~~A~~~L~~~d~VlgPa~DGGy~LiG~~ 106 (122)
T PF09837_consen 34 GFSFFPQ-QGGDLGERMANAFQQAARGYE-PVVLI--GSDC--PDLTPDDLEQAFEALQRHDVVLGPAEDGGYYLIGLR 106 (122)
T ss_dssp TSEEEE---SSSHHHHHHHHHHHHHTT-S-EEEEE---SS---TT--HHHHHHHHHHTTT-SEEEEEBTTSSEEEEEEE
T ss_pred CCEEeec-CCCCHHHHHHHHHHHHHcCCC-cEEEE--cCCC--CCCCHHHHHHHHHHhccCCEEEeeccCCCEEEEecC
Confidence 3455555 778999999999999999998 55443 6555 678888999999999888777778778876666555
No 17
>TIGR00620 sporelyase spore photoproduct lyase. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.77 E-value=2e+02 Score=23.08 Aligned_cols=46 Identities=20% Similarity=0.362 Sum_probs=34.1
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEEE----eCCCccccHHHHHHHHHHHHHHhcc
Q 044576 45 HDYSVRLKAARKFLKDGDKVKVIVN----LKGRENEFRNIAIELIRRFQNDVGE 94 (141)
Q Consensus 45 HDl~~K~kqa~~FL~~G~kVkv~l~----frGRe~~~~e~g~~ll~ri~~~l~~ 94 (141)
--|+-++..|.++.+.|.+|.+.+- +.|=+..+ .++|+++.+.|..
T Consensus 68 ~sl~~Rl~Aa~k~a~aGy~Vg~~~~PIi~~egW~e~Y----~~l~~~l~~~l~~ 117 (199)
T TIGR00620 68 SPLDKRIEAAVKVAKAGYPLGFIIAPIYIHEGWKEGY----RNLLEKLDEALPQ 117 (199)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeeceEeeCChHHHH----HHHHHHHHHhCCH
Confidence 3477799999999999999999764 56655333 5567777766664
No 18
>PRK13992 minC septum formation inhibitor; Provisional
Probab=20.61 E-value=1.8e+02 Score=23.10 Aligned_cols=28 Identities=18% Similarity=0.466 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEEEeCCCcc
Q 044576 46 DYSVRLKAARKFLKDGDKVKVIVNLKGREN 75 (141)
Q Consensus 46 Dl~~K~kqa~~FL~~G~kVkv~l~frGRe~ 75 (141)
+|..|+.++..|+..|.+ |.|.|.+++.
T Consensus 27 ~L~~kl~~~~~FF~~~a~--v~l~~~~~~~ 54 (205)
T PRK13992 27 EIDAKITQMGGFFAKGDK--ISLMIENHEK 54 (205)
T ss_pred HHHHHHHhChHhhcCCCe--EEEEecCCCC
Confidence 567899999999988865 4566677764
No 19
>KOG1708 consensus Mitochondrial/chloroplast ribosomal protein L24 [Translation, ribosomal structure and biogenesis]
Probab=20.37 E-value=40 Score=27.66 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=20.7
Q ss_pred HHHhCCCeEEEEEEeCCCccccHHHH
Q 044576 56 KFLKDGDKVKVIVNLKGRENEFRNIA 81 (141)
Q Consensus 56 ~FL~~G~kVkv~l~frGRe~~~~e~g 81 (141)
+|++.|.+|+++++ -||.+..+|..
T Consensus 155 r~~e~GekVRvstr-SG~iIpipe~~ 179 (236)
T KOG1708|consen 155 RFTEDGEKVRVSTR-SGRIIPIPEKW 179 (236)
T ss_pred EEcCCCcEEEEEec-ccccccCcccc
Confidence 58999999999997 78887666654
Done!