Query 044576
Match_columns 141
No_of_seqs 111 out of 985
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 07:42:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044576.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044576hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ife_A Protein (translation in 100.0 8.2E-40 2.8E-44 234.4 8.2 96 20-117 2-99 (100)
2 1tig_A IF3-C, translation init 100.0 1.1E-38 3.7E-43 226.3 9.5 90 29-118 3-93 (94)
3 1i96_V Translation initiation 100.0 8E-38 2.7E-42 219.9 10.4 87 32-118 1-88 (89)
4 2crq_A Mitochondrial translati 100.0 1.3E-37 4.6E-42 226.8 8.9 100 20-122 4-107 (112)
5 2wqi_A Tumor protein P73; tumo 32.7 28 0.00097 21.4 2.2 23 65-93 6-28 (51)
6 1olg_A Tumor suppressor P53 (o 32.5 26 0.00088 20.7 1.9 23 65-93 9-31 (42)
7 2qt7_A Receptor-type tyrosine- 32.3 50 0.0017 22.5 3.7 47 76-122 14-61 (91)
8 2va0_A ABFS arabinofuranosidas 27.5 27 0.00094 25.0 1.7 18 58-75 92-109 (131)
9 4hti_A Receptor-type tyrosine- 24.1 92 0.0032 21.4 3.9 49 73-121 18-67 (99)
10 1aie_A P53; oligomer, DNA; 1.5 21.4 18 0.00061 20.1 -0.2 21 67-93 4-24 (31)
No 1
>2ife_A Protein (translation initiation factor IF3); gene regulation; NMR {Escherichia coli} SCOP: d.68.1.1
Probab=100.00 E-value=8.2e-40 Score=234.39 Aligned_cols=96 Identities=33% Similarity=0.629 Sum_probs=85.8
Q ss_pred HHhhhhccCCCcceeeEEEecCCCcchHHHHHHHHHHHHhCCCeEEEEEEeCCCccccHHHHHHHHHHHHHHhccccccc
Q 044576 20 KGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELASEE 99 (141)
Q Consensus 20 ke~kKkq~~~~~~~KEIrl~~~I~~HDl~~K~kqa~~FL~~G~kVkv~l~frGRe~~~~e~g~~ll~ri~~~l~~~~~ve 99 (141)
+|+||+| +.+++|||+|+|+||+|||++|+++|++||++||+|+|+|+|||||++|+|+|.++|++|.++|+|+|.+|
T Consensus 2 keakkkq--k~~~vKEikl~p~Id~HD~~~K~k~a~~FL~~GdKVKvti~fRGRE~~h~e~g~~lL~r~~~~l~d~~~ve 79 (100)
T 2ife_A 2 EFQKKKQ--KVIQVKEIKFRPGTDEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQQIGMEVLNRVKDDLQELAVVE 79 (100)
T ss_dssp ----------CCEEEEEEECTTCCHHHHTHHHHHHHHHHHTTEEEEEEECCSSCTTCCSSHHHHHHHHHHHHHTTTEEES
T ss_pred chhhccc--CCceeEEEEecCCcCcchHHHHHHHHHHHHHCCCEEEEEEEECCccccCHHHHHHHHHHHHHHhhhheEEe
Confidence 5789999 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-c-CCCcceeEEEEecCcc
Q 044576 100 N-K-NFRDRNIFIILVPNKA 117 (141)
Q Consensus 100 ~-~-~~eG~~~~~~l~P~k~ 117 (141)
+ | +++|++|+|+|+|+++
T Consensus 80 ~~p~k~eGr~m~m~l~Pkk~ 99 (100)
T 2ife_A 80 SFPTKIEGRQMIMVLAPKKK 99 (100)
T ss_dssp CCCCCCCSSCCEEEEEECCC
T ss_pred cCcccccCceEEEEEEeCCC
Confidence 7 8 8999999999999863
No 2
>1tig_A IF3-C, translation initiation factor 3; IF3 C-terminal domain, ribosome binding factor; 2.00A {Geobacillus stearothermophilus} SCOP: d.68.1.1
Probab=100.00 E-value=1.1e-38 Score=226.31 Aligned_cols=90 Identities=31% Similarity=0.650 Sum_probs=85.1
Q ss_pred CCcceeeEEEecCCCcchHHHHHHHHHHHHhCCCeEEEEEEeCCCccccHHHHHHHHHHHHHHhcccccccc-cCCCcce
Q 044576 29 NRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELASEEN-KNFRDRN 107 (141)
Q Consensus 29 ~~~~~KEIrl~~~I~~HDl~~K~kqa~~FL~~G~kVkv~l~frGRe~~~~e~g~~ll~ri~~~l~~~~~ve~-~~~eG~~ 107 (141)
+.+++|||+|+|+||+|||++|+++|++||++||+|+|+|+|||||++|+|+|.++|++|.++|+|+|.+|+ |+++|++
T Consensus 3 k~~~vKEikl~p~Id~hD~~~K~k~a~~FL~~GdKVKvti~fRGRE~~h~e~g~~lL~r~~~~l~d~~~ve~~pk~eGr~ 82 (94)
T 1tig_A 3 KVINVKEVRLSPTIEEHDFNTKLRNARKFLEKGDKVKATIRFKGRAITHKEIGQRVLDRLSEACADIAVVETAPKMDGRN 82 (94)
T ss_dssp --CCEEEEEECTTCCHHHHHHHHHHHHHHHHTTCEEEEEEECCSCCTTHHHHHHHHHHHHHHHTTTTEEEEEEEEEETTE
T ss_pred ccceeEEEEecCCcCcchHHHHHHHHHHHHHCCCEEEEEEEECCccccCHHHHHHHHHHHHHHhhhhhEEecCccccCCE
Confidence 678999999999999999999999999999999999999999999999999999999999999999999997 7999999
Q ss_pred eEEEEecCcch
Q 044576 108 IFIILVPNKAL 118 (141)
Q Consensus 108 ~~~~l~P~k~~ 118 (141)
|+|+|+|++++
T Consensus 83 m~m~l~Pkkk~ 93 (94)
T 1tig_A 83 MFLVLAPKNDN 93 (94)
T ss_dssp EEEEEEESCC-
T ss_pred EEEEEEeCCCC
Confidence 99999998753
No 3
>1i96_V Translation initiation factor IF3; 30S ribosome; HET: WO2; 4.20A {Thermus thermophilus} SCOP: d.68.1.1
Probab=100.00 E-value=8e-38 Score=219.93 Aligned_cols=87 Identities=31% Similarity=0.588 Sum_probs=83.7
Q ss_pred ceeeEEEecCCCcchHHHHHHHHHHHHhCCCeEEEEEEeCCCccccHHHHHHHHHHHHHHhcccccccc-cCCCcceeEE
Q 044576 32 DLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELASEEN-KNFRDRNIFI 110 (141)
Q Consensus 32 ~~KEIrl~~~I~~HDl~~K~kqa~~FL~~G~kVkv~l~frGRe~~~~e~g~~ll~ri~~~l~~~~~ve~-~~~eG~~~~~ 110 (141)
++|||+|+|+||+|||++|+++|++||++||+|||+|+|||||++|+|+|.++|++|.++|+++|.+|+ |+++|++|+|
T Consensus 1 ~vKEikl~p~Id~hD~~~K~k~a~~FL~~GdKVKvti~fRGRE~~h~e~g~~lL~r~~~~l~d~~~ve~~pk~eGr~m~m 80 (89)
T 1i96_V 1 EVKSIKFRVKIDEHDYQTKLGHIKRFLQEGHKVKVTIMFRGREVAHPELGERILNRVTEDLKDLAVVEMKPEMLGRDMNM 80 (89)
T ss_pred CceEEEecCCcCcchHHHHHHHHHHHHHCCCEEEEEEEECCccccCHHHHHHHHHHHHHHhhhheEEecCccccCCEEEE
Confidence 479999999999999999999999999999999999999999999999999999999999999999997 7999999999
Q ss_pred EEecCcch
Q 044576 111 ILVPNKAL 118 (141)
Q Consensus 111 ~l~P~k~~ 118 (141)
+|+|++++
T Consensus 81 ~l~Pkkkk 88 (89)
T 1i96_V 81 LLAPVKVS 88 (89)
T ss_pred EEEeCCCC
Confidence 99998643
No 4
>2crq_A Mitochondrial translational initiation factor 3; ribosome, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=100.00 E-value=1.3e-37 Score=226.85 Aligned_cols=100 Identities=16% Similarity=0.217 Sum_probs=93.6
Q ss_pred HHhhhhccCCCcceeeEEEecCCCcchHHHHHHHHHHHHhCCCeEEEEEEeCCCccc-cHHHHHHHHHHHHHHhcccccc
Q 044576 20 KGQQKKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENE-FRNIAIELIRRFQNDVGELASE 98 (141)
Q Consensus 20 ke~kKkq~~~~~~~KEIrl~~~I~~HDl~~K~kqa~~FL~~G~kVkv~l~frGRe~~-~~e~g~~ll~ri~~~l~~~~~v 98 (141)
++++++| +.+++|||+|+|+||+|||+||+++|++||++||+|+|+|+ ||||++ |+|+|.++|++|.++|+|+|.+
T Consensus 4 ~eakkkq--k~~~vKEIrl~p~Id~HDl~~K~k~a~kFLe~GdKVKvti~-RGRE~~~~~e~g~~lL~r~~~~l~dv~~v 80 (112)
T 2crq_A 4 GSSGPKT--GPTMTKELVFSSNIGQHDLDTKSKQIQQWIEKKYHVQVTIK-RRKDAEQSEEETEEIFNQILQTMPDIATF 80 (112)
T ss_dssp CCCCCCC--CCSCEEEEEEETTCCHHHHHHHHHHHHHHHHTTCEEEEEEE-CCTTCSCCHHHHHHHHHHHHTTSTTTCEE
T ss_pred hhhhccc--CCceeEEEEecCCcccchHHHHHHHHHHHHHCCCEEEEEEE-CCccccccHHHHHHHHHHHHHHhhhhhEE
Confidence 4678888 78999999999999999999999999999999999999999 999999 9999999999999999999999
Q ss_pred cc-cC--CCcceeEEEEecCcchhhhc
Q 044576 99 EN-KN--FRDRNIFIILVPNKALLQKA 122 (141)
Q Consensus 99 e~-~~--~eG~~~~~~l~P~k~~~~~~ 122 (141)
|. |+ ++|++|+|+|+|++++..++
T Consensus 81 E~~Pk~~~eGr~m~mvL~Pkkkk~~~~ 107 (112)
T 2crq_A 81 SSRPKAIRGGTASMCVFRHLSKKEEKS 107 (112)
T ss_dssp EEEEEEEGGGTEEEEEEECCSSSCCCS
T ss_pred eccccccCCCCEEEEEEEeCCcchhcc
Confidence 97 78 89999999999998665443
No 5
>2wqi_A Tumor protein P73; tumor suppression, transcription factor, tetramer, oligomerization domain, DNA-binding, cooperativity, transcription; 1.70A {Homo sapiens} PDB: 2wtt_A 2kby_A 2wqj_A
Probab=32.66 E-value=28 Score=21.38 Aligned_cols=23 Identities=22% Similarity=0.596 Sum_probs=18.4
Q ss_pred EEEEEeCCCccccHHHHHHHHHHHHHHhc
Q 044576 65 KVIVNLKGRENEFRNIAIELIRRFQNDVG 93 (141)
Q Consensus 65 kv~l~frGRe~~~~e~g~~ll~ri~~~l~ 93 (141)
-++|.-||||+ .++|.+|.+.|+
T Consensus 6 ~ftL~VRGRe~------yEml~ki~esLE 28 (51)
T 2wqi_A 6 TYYLQVRGREN------FEILMKLKESLE 28 (51)
T ss_dssp EEEEEESCHHH------HHHHHHHHHHHH
T ss_pred EEEEEEecHHH------HHHHHHHHHHHH
Confidence 57888899986 778888887665
No 6
>1olg_A Tumor suppressor P53 (oligomerization domain); anti-oncogene; NMR {Homo sapiens} SCOP: a.53.1.1 PDB: 1olh_A 1sae_A 1saf_A 1sag_A 1sah_A 1sai_A 1saj_A 1sak_A 1sal_A 3sak_A
Probab=32.50 E-value=26 Score=20.74 Aligned_cols=23 Identities=22% Similarity=0.557 Sum_probs=17.9
Q ss_pred EEEEEeCCCccccHHHHHHHHHHHHHHhc
Q 044576 65 KVIVNLKGRENEFRNIAIELIRRFQNDVG 93 (141)
Q Consensus 65 kv~l~frGRe~~~~e~g~~ll~ri~~~l~ 93 (141)
-+++.-||||+ .++|.+|.+.|+
T Consensus 9 ~ftL~VrGRe~------yEml~ki~esLE 31 (42)
T 1olg_A 9 YFTLQIRGRER------FEMFRELNEALE 31 (42)
T ss_dssp EEEEEEESHHH------HHHHHHHHHHHH
T ss_pred EEEEEEecHHH------HHHHHHHHHHHH
Confidence 57888899986 777888777664
No 7
>2qt7_A Receptor-type tyrosine-protein phosphatase-like N; IA-2, ICA-512, protein-tyrosine phosphatase, transmembrane protein, diabetes, autoimmunity; 1.30A {Homo sapiens} PDB: 3n01_A 3np5_A 3ng8_A 3n4w_A
Probab=32.31 E-value=50 Score=22.49 Aligned_cols=47 Identities=15% Similarity=0.021 Sum_probs=35.6
Q ss_pred ccHHHHHHHHHHHHHHhcc-cccccccCCCcceeEEEEecCcchhhhc
Q 044576 76 EFRNIAIELIRRFQNDVGE-LASEENKNFRDRNIFIILVPNKALLQKA 122 (141)
Q Consensus 76 ~~~e~g~~ll~ri~~~l~~-~~~ve~~~~eG~~~~~~l~P~k~~~~~~ 122 (141)
...+.|..||+.+.+.|.= -+..-.....|.-++.-++|++....++
T Consensus 14 ls~~eG~~l~~~la~ll~l~~~~Ft~i~V~g~aVTFrV~~N~~n~taa 61 (91)
T 2qt7_A 14 LSLAAGVKLLEILAEHVHMSSGSFINISVVGPALTFRIRHNEQNLSLA 61 (91)
T ss_dssp CCHHHHHHHHHHHHHHHTSCGGGEEEEEEETTEEEEEECCCTTCCCHH
T ss_pred CCHHHHHHHHHHHHHHhcCCccceeeeEeecceEEEEeccCcccCCHH
Confidence 3578999999999998763 3433445788999999999998765444
No 8
>2va0_A ABFS arabinofuranosidase two component system SEN protein; kinase, PAS domain, transferase; 2.60A {Cellvibrio japonicus}
Probab=27.47 E-value=27 Score=24.95 Aligned_cols=18 Identities=44% Similarity=0.761 Sum_probs=13.0
Q ss_pred HhCCCeEEEEEEeCCCcc
Q 044576 58 LKDGDKVKVIVNLKGREN 75 (141)
Q Consensus 58 L~~G~kVkv~l~frGRe~ 75 (141)
|-+|+.|++++.|-||..
T Consensus 92 L~DG~~~k~V~i~~~~~~ 109 (131)
T 2va0_A 92 LNDGNSVKVVTISAGRDE 109 (131)
T ss_dssp CTTSCEEEEEEECC----
T ss_pred ecCCCceEEEEeccCCCC
Confidence 568999999999999853
No 9
>4hti_A Receptor-type tyrosine-protein phosphatase N2; phogrin, IA-2BETA, protein-tyrosine phosphatase, transmembra protein, diabetes, autoimmunity; 1.95A {Homo sapiens} PDB: 4htj_A
Probab=24.14 E-value=92 Score=21.44 Aligned_cols=49 Identities=6% Similarity=-0.024 Sum_probs=36.0
Q ss_pred CccccHHHHHHHHHHHHHHhc-ccccccccCCCcceeEEEEecCcchhhh
Q 044576 73 RENEFRNIAIELIRRFQNDVG-ELASEENKNFRDRNIFIILVPNKALLQK 121 (141)
Q Consensus 73 Re~~~~e~g~~ll~ri~~~l~-~~~~ve~~~~eG~~~~~~l~P~k~~~~~ 121 (141)
++....+.|..+++.+.+.|. .-+..-.....|.-++.-++|+.....+
T Consensus 18 ~~~l~~~~G~~l~~~la~~l~l~~~~F~~isV~g~aVTFrV~~N~~n~ta 67 (99)
T 4hti_A 18 RDPLRPEEGRRLVEDVARLLQVPSSAFADVEVLGPAVTFKVSANVQNVTT 67 (99)
T ss_dssp CSSCCHHHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEEEECCCTTCCCH
T ss_pred CCCCCHHHHHHHHHHHHHHhCCchhheeeeeecCceEEEEeccCCCCCCH
Confidence 444568899999999999885 2233344678899999999998865443
No 10
>1aie_A P53; oligomer, DNA; 1.50A {Homo sapiens} SCOP: a.53.1.1 PDB: 2j0z_A 1c26_A 1pes_A 1pet_A 2j10_A 1hs5_A 2j11_A
Probab=21.44 E-value=18 Score=20.11 Aligned_cols=21 Identities=24% Similarity=0.642 Sum_probs=14.6
Q ss_pred EEEeCCCccccHHHHHHHHHHHHHHhc
Q 044576 67 IVNLKGRENEFRNIAIELIRRFQNDVG 93 (141)
Q Consensus 67 ~l~frGRe~~~~e~g~~ll~ri~~~l~ 93 (141)
++.-||||+ .++|.+|.+.|+
T Consensus 4 tL~VrGRe~------yEml~ki~d~LE 24 (31)
T 1aie_A 4 TLQIRGRER------FEMFRELNEALE 24 (31)
T ss_dssp CCCCCSHHH------HHHHHHHHHHHH
T ss_pred EEEeccHHH------HHHHHHHHHHHH
Confidence 455689876 677777777654
Done!