BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044578
(769 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 421 bits (1083), Expect = e-118, Method: Compositional matrix adjust.
Identities = 273/667 (40%), Positives = 360/667 (53%), Gaps = 39/667 (5%)
Query: 113 TTRSPLFLGLEPADSTSIWSQKVADYDVIVGVLDTGIWPESASFNDTGMTPVPAHWKGAC 172
TT + FL L P S+ +W DVIV VLD+GIWPESASF D GM +P WKG C
Sbjct: 1 TTHTSDFLKLNP--SSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGIC 58
Query: 173 ETGRGFQKHHCNRKIVGARVFYRGYEAATGKINEQNEYKSPRDQDGHGTHTAATVAGSPV 232
+ G F CNRK++GA F +G A +N S RD DGHGTH A+ AG+
Sbjct: 59 KPGTQFNASMCNRKLIGANYFNKGILANDPTVNIT--MNSARDTDGHGTHCASITAGNFA 116
Query: 233 HGANLLGYAYGTARGMSTGARIAVYKVCWSGGCFSSDILSAVDRAVADXXXXXXXXXXXX 292
G + GYA GTARG++ AR+AVYK ++ G F+SD+++A+D+AVAD
Sbjct: 117 KGVSHFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISYGYR 176
Query: 293 XXXYHRDSLSIATFGAMEMGVFVSCSAGNGGPDPVSLTNVSPWITTVGASTLDRDFPATV 352
+ D++SIA+FGAM GV VS SAGN GP SL N SPWI V + DR F T+
Sbjct: 177 FIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTL 236
Query: 353 KLGTGRTITGVSLYKGRRALLPNKQYPVVYMGXXXXXXXXLCLEGTLNPTTVAGKIVICD 412
LG G I G SL+ R + + PV+Y L NP IVICD
Sbjct: 237 TLGNGLKIRGWSLFPARAFV---RDSPVIYNKTLSDCSSEELLSQVENPENT---IVICD 290
Query: 413 RG--------ISPRVQKGQVVKDAGGIGVILANTAANGEELVADCHLLPAVAVGEIEGKE 464
I R + + + GV + T N P V V + EGK+
Sbjct: 291 DNGDFSDQMRIITRARLKAAIFISEDPGVFRSATFPN-----------PGVVVNKKEGKQ 339
Query: 465 IKQYASTSPKATASLALLGTRVGIKPSPVVAAFSSRGPNFLTLEILKPDIVAPGVNILAA 524
+ Y S TA++ T + KP+PVVAA S+RGP+ L I KPDI+APGV ILAA
Sbjct: 340 VINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAA 399
Query: 525 WSGETGPSSLPADHRRVKFNIL-SGTSMSCPHVSGIAALLKARHPEWSPAAIKSALMTTA 583
+ +S+ + IL SGTSM+ PH +GIAA+LKA HPEWSP+AI+SA+MTTA
Sbjct: 400 YPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTA 459
Query: 584 YVHDNTHNPLKDASSYEPSSPYDHGAGHINPVKALDPGLIYDINAQDYFDFLCSQKLTPM 643
DNT P+KD+ + + ++P D GAGH++P +ALDPGL+YD QDY + LCS T
Sbjct: 460 DPLDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEE 519
Query: 644 ELQVFRKYANRTCRHSIAKP-GDLNYPAISVVFPETANVSAL--TLRRTVTNVGPPVSNY 700
+ F+ A + H+ + P DLNYP+ ++ N + L +RTVTNVG + Y
Sbjct: 520 Q---FKTIARSSASHNCSNPSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATY 576
Query: 701 HVVVSPFKGVAIKVEPQKLHFTKKYQKLSYKITFTTKSPE-TIPEFGGLIW--KDGVHKV 757
+ K I V PQ L F K +K SY +T E G + W ++G H V
Sbjct: 577 KAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSV 636
Query: 758 RSPIVIT 764
RSPIV +
Sbjct: 637 RSPIVTS 643
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 420 bits (1080), Expect = e-117, Method: Compositional matrix adjust.
Identities = 262/667 (39%), Positives = 362/667 (54%), Gaps = 60/667 (8%)
Query: 113 TTRSPLFLGLEPADSTSIWSQKVADYDVIVGVLDTGIWPESASFNDTGMTPVPAHWKGAC 172
TTRS FLG ++ + + +++VGVLDTGIWPES SF+D G +P P WKG C
Sbjct: 1 TTRSWDFLGFP----LTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTC 56
Query: 173 ETGRGFQKHHCNRKIVGARVFYRGYEAATGKINEQNEYKSPRDQDGHGTHTAATVAGSPV 232
ET F+ CNRKI+GAR ++ G + G +N PRD +GHGTHTA+T AG V
Sbjct: 57 ETSNNFR---CNRKIIGARSYHIGRPISPGDVN------GPRDTNGHGTHTASTAAGGLV 107
Query: 233 HGANLLGYAYGTARGMSTGARIAVYKVCWSGGCFSSDILSAVDRAVADXXXXXXXXXXXX 292
ANL G GTARG ARIA YKVCW+ GC +DIL+A D A+AD
Sbjct: 108 SQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGA 167
Query: 293 X-XXYHRDSLSIATFGAMEMGVFVSCSAGNGGPDPVSLTNVSPWITTVGASTLDRDFPAT 351
Y D+++I +F A+E G+ S SAGNGGP+ + ++SPW+ +V AST+DR F
Sbjct: 168 NPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQ 227
Query: 352 VKLGTGRTITGVSLYKGRRALLPNKQYPVVY-----MGXXXXXXXXLCLEGTLNPTTVAG 406
V++G G++ GVS+ N+ YP+V C + ++NP + G
Sbjct: 228 VQIGNGQSFQGVSINT-----FDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKG 282
Query: 407 KIVICDRGISPRVQKGQVVKDA-GGIGVILANTAANGEELVADCHLLPAVAV--GEIEGK 463
KIV+C+ P + K G GV++ + + AD + LP+ + ++
Sbjct: 283 KIVVCEASFGPH----EFFKSLDGAAGVLMTSNTRD----YADSYPLPSSVLDPNDLLAT 334
Query: 464 EIKQYASTSPKATASLALLGTRVGIKPSPVVAAFSSRGPNFLTLEILKPDIVAPGVNILA 523
Y+ SP AT T + +PVV +FSSRGPN T +++KPDI PGV ILA
Sbjct: 335 LRYIYSIRSPGAT---IFKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILA 391
Query: 524 AWSGETGPSSLPAD--HRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSPAAIKSALMT 581
AW PS P R FNI+SGTSMSCPH++GIA +K +P WSPAAIKSALMT
Sbjct: 392 AW-----PSVAPVGGIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMT 446
Query: 582 TAYVHDNTHNPLKDASSYEPSSPYDHGAGHINPVKALDPGLIYDINAQDYFDFLCSQKLT 641
TA +P+ + + P + + +G+GH+NP+KA+ PGL+YD N DY FLC Q
Sbjct: 447 TA-------SPMN--ARFNPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYN 497
Query: 642 PMELQVFRKYANRTCRHSIAKPGDLNYPA--ISVVFPETANVSALTLRRTVTNVGPPVSN 699
++ + + + DLNYP+ +SV +T N RT+T+V P S
Sbjct: 498 TQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFN---QYFNRTLTSVAPQAST 554
Query: 700 YHVVVSPFKGVAIKVEPQKLHFTKKYQKLSYKITFTTKSPETIPEFGGLIWKDGVHKVRS 759
Y ++S +G+ I V P L F + S+ +T S + L+W DGVH VRS
Sbjct: 555 YRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLT-VRGSIKGFVVSASLVWSDGVHYVRS 613
Query: 760 PIVITRL 766
PI IT L
Sbjct: 614 PITITSL 620
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 82/172 (47%), Gaps = 27/172 (15%)
Query: 448 DCHLLPAVAVGEIEGKEIKQYASTSPKATASLALLGTRVGIKPSPVVAAFSSRGPNFLTL 507
D L+ VA G +Y SP A + + +G + V+ FSSRGP
Sbjct: 269 DAGLVVVVAAGN---SGPNKYTVGSPAAASKVITVGA---VDKYDVITDFSSRGPT--AD 320
Query: 508 EILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARH 567
LKP++VAPG I+AA + T D+ + GT+M+ PHV+GIAALL H
Sbjct: 321 NRLKPEVVAPGNWIIAARASGTSMGQPINDY----YTAAPGTAMATPHVAGIAALLLQAH 376
Query: 568 PEWSPAAIKSALMTTAYVHDNTHNPLKDASSYEPSSPYD--HGAGHINPVKA 617
P W+P +K+AL+ TA + +P D +GAG +N KA
Sbjct: 377 PSWTPDKVKTALIETADI-------------VKPDEIADIAYGAGRVNAYKA 415
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 68/147 (46%), Gaps = 14/147 (9%)
Query: 202 GKINEQNEYKSPRDQDGHGTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCW 261
G ++ N +P D +GHGTH A+ AG+ + G +GM+ GA++ KV
Sbjct: 163 GWVDFVNGKTTPYDDNGHGTHVASIAAGTGAA-------SNGKYKGMAPGAKLVGIKVLN 215
Query: 262 SGGCFS-SDILSAVDRAVADXXXXXXXXXXXXXXXYHR----DSLSIATFGAMEMGVFVS 316
G S SDI++ VD AV + DSLS A A + G+ V
Sbjct: 216 GQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVNNAWDAGLVVV 275
Query: 317 CSAGNGGPDPVSLTN--VSPWITTVGA 341
+AGN GP+ ++ + + + TVGA
Sbjct: 276 VAAGNSGPNKYTVGSPAAASKVITVGA 302
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 102/224 (45%), Gaps = 37/224 (16%)
Query: 404 VAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAANGEEL-VADCHLLPAVAVGEIEG 462
V GKI + +RG K K AG +GV++ + G + + + +PA + +G
Sbjct: 288 VKGKIALIERGDIDFKDKIANAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDG 347
Query: 463 KEIKQYASTSPKATASLALLGTRVGIKPSPVVAAFSSRGPNFLTLE-ILKPDIVAPGVNI 521
+K + + A+ +L T K ++ FSS G LT + +KPDI APG +I
Sbjct: 348 LLLKDNSKKTITFNATPKVLPTASDTK----LSRFSSWG---LTADGNIKPDIAAPGQDI 400
Query: 522 LAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLK----ARHPEWSPAA--- 574
L++ + K+ LSGTSMS P V+GI LL+ ++P+ +P+
Sbjct: 401 LSSVANN-------------KYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLD 447
Query: 575 -IKSALMTTAYVHDNTHNPLKDASSYEPSSPYDHGAGHINPVKA 617
K LM++A L D SP GAG ++ KA
Sbjct: 448 LAKKVLMSSA-------TALYDEDEKAYFSPRQQGAGAVDAKKA 484
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 22/95 (23%)
Query: 495 AAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCP 554
A+FSS GP D++APGV+I S+LP + K+ SGTSM+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIX---------STLPGN----KYGAYSGTSMASP 225
Query: 555 HVSGIAALLKARHPEWSPAAIKSAL-MTTAYVHDN 588
HV+G AAL+ ++HP W+ ++S+L TT Y+ D+
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTYLGDS 260
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 13/78 (16%)
Query: 513 DIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSP 572
DIVAPGVN+ + + G T + L+GTSM+ PHV+G+AAL+K ++P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTSMATPHVAGVAALVKQKNPSWSN 237
Query: 573 AAIKSALMTTAYVHDNTH 590
I++ L TA NT+
Sbjct: 238 VQIRNHLKNTATGLGNTN 255
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 21/89 (23%)
Query: 495 AAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCP 554
A FSS GP D++APGV+I S+LP K+ LSGTSM+ P
Sbjct: 178 APFSSVGPEL--------DVMAPGVSIC---------STLPGG----KYGALSGTSMASP 216
Query: 555 HVSGIAALLKARHPEWSPAAIKSALMTTA 583
HV+G AAL+ ++HP W+ ++S+L TA
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTA 245
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 21/88 (23%)
Query: 495 AAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCP 554
A+FSS GP D++APGV+I S+LP + K+ SGTSM+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIX---------STLPGN----KYGAYSGTSMASP 225
Query: 555 HVSGIAALLKARHPEWSPAAIKSALMTT 582
HV+G AAL+ ++HP W+ ++S+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 21/89 (23%)
Query: 495 AAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCP 554
A FSS GP D++APGV+I S+LP K+ LSGT+M+ P
Sbjct: 178 APFSSVGPEL--------DVMAPGVSIC---------STLPGG----KYGALSGTAMASP 216
Query: 555 HVSGIAALLKARHPEWSPAAIKSALMTTA 583
HV+G AAL+ ++HP W+ ++S+L TA
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTA 245
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 21/88 (23%)
Query: 495 AAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCP 554
A+FSS GP D++APGV+I S+LP + K+ +GTSM+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSI---------QSTLPGN----KYGAYNGTSMASP 225
Query: 555 HVSGIAALLKARHPEWSPAAIKSALMTT 582
HV+G AAL+ ++HP W+ ++S+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLQNT 253
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 21/88 (23%)
Query: 495 AAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCP 554
A+FSS GP D++APGV+I S+LP + K+ +GTSM+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSI---------QSTLPGN----KYGAYNGTSMASP 225
Query: 555 HVSGIAALLKARHPEWSPAAIKSALMTT 582
HV+G AAL+ ++HP W+ ++S+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLQNT 253
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 21/88 (23%)
Query: 495 AAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCP 554
A+FSS GP D++APGV+I S+LP + K+ SGTSM+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIC---------STLPGN----KYGAKSGTSMASP 225
Query: 555 HVSGIAALLKARHPEWSPAAIKSALMTT 582
HV+G AAL+ ++HP W+ ++S+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 21/88 (23%)
Query: 495 AAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCP 554
A+FSS GP D++APGV+I S+LP + K+ SGTSM+ P
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSIC---------STLPGN----KYGAKSGTSMASP 216
Query: 555 HVSGIAALLKARHPEWSPAAIKSALMTT 582
HV+G AAL+ ++HP W+ ++S+L T
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENT 244
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 21/88 (23%)
Query: 495 AAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCP 554
A+FSS GP D++APGV+I S+LP + K+ SGTSM+ P
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSIC---------STLPGN----KYGAKSGTSMASP 216
Query: 555 HVSGIAALLKARHPEWSPAAIKSALMTT 582
HV+G AAL+ ++HP W+ ++S+L T
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENT 244
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 21/88 (23%)
Query: 495 AAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCP 554
A+FSS GP D++APGV+I+ S+LP + K+ SGT+M+ P
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSIV---------STLPGN----KYGAKSGTAMASP 216
Query: 555 HVSGIAALLKARHPEWSPAAIKSALMTT 582
HV+G AAL+ ++HP W+ ++S+L T
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENT 244
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 21/88 (23%)
Query: 495 AAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCP 554
A+FSS GP D++APGV+I+ S+LP + K+ SGT+M+ P
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSIV---------STLPGN----KYGAKSGTAMASP 216
Query: 555 HVSGIAALLKARHPEWSPAAIKSALMTT 582
HV+G AAL+ ++HP W+ ++S+L T
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENT 244
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 21/88 (23%)
Query: 495 AAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCP 554
A+FSS GP D++APGV+I S+LP + K+ SGTSM+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIC---------STLPGN----KYGAKSGTSMASP 225
Query: 555 HVSGIAALLKARHPEWSPAAIKSALMTT 582
HV+G AAL+ ++HP W+ ++S+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 21/88 (23%)
Query: 495 AAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCP 554
A+FSS GP D++APGV+I S+LP + K+ SGTSM+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSI---------QSTLPGN----KYGAKSGTSMASP 225
Query: 555 HVSGIAALLKARHPEWSPAAIKSALMTT 582
HV+G AAL+ ++HP W+ ++S+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 21/88 (23%)
Query: 495 AAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCP 554
A+FSS GP D++APGV+I S+LP + K+ +GTSM+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSI---------QSTLPGN----KYGAYNGTSMASP 225
Query: 555 HVSGIAALLKARHPEWSPAAIKSALMTT 582
HV+G AAL+ ++HP W+ ++S+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 21/88 (23%)
Query: 495 AAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCP 554
A+FSS GP D++APGV+I S+LP + K+ +GTSM+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSI---------QSTLPGN----KYGAYNGTSMASP 225
Query: 555 HVSGIAALLKARHPEWSPAAIKSALMTT 582
HV+G AAL+ ++HP W+ ++S+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 21/88 (23%)
Query: 495 AAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCP 554
A+FSS GP D++APGV+I S+LP + K+ +GTSM+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSI---------QSTLPGN----KYGAYNGTSMASP 225
Query: 555 HVSGIAALLKARHPEWSPAAIKSALMTT 582
HV+G AAL+ ++HP W+ ++S+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 21/88 (23%)
Query: 495 AAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCP 554
A+FSS GP D++APGV+I S+LP + K+ SGT M+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSI---------QSTLPGN----KYGAYSGTXMASP 225
Query: 555 HVSGIAALLKARHPEWSPAAIKSALMTT 582
HV+G AAL+ ++HP W+ ++S+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 21/88 (23%)
Query: 495 AAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCP 554
A+FSS GP D++APGV+I WS +LP + K+ SGT M+ P
Sbjct: 175 ASFSSVGPEL--------DVMAPGVSI---WS------TLPGN----KYGAKSGTXMASP 213
Query: 555 HVSGIAALLKARHPEWSPAAIKSALMTT 582
HV+G AAL+ ++HP W+ ++S+L T
Sbjct: 214 HVAGAAALILSKHPNWTNTQVRSSLENT 241
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 21/88 (23%)
Query: 495 AAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCP 554
A+FSS GP D++APGV+I S+LP + K+ SGT M+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSI---------QSTLPGN----KYGAYSGTXMASP 225
Query: 555 HVSGIAALLKARHPEWSPAAIKSALMTT 582
HV+G AAL+ ++HP W+ ++S+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 13/71 (18%)
Query: 513 DIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSP 572
DIVAPGVN+ + + G T + L+GTSM+ PHV+G AAL+K ++P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 573 AAIKSALMTTA 583
I++ L TA
Sbjct: 238 VQIRNHLKNTA 248
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 13/71 (18%)
Query: 513 DIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSP 572
DIVAPGVN+ + + G T + L+GTSM+ PHV+G AAL+K ++P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 573 AAIKSALMTTA 583
I++ L TA
Sbjct: 238 VQIRNHLKNTA 248
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 13/71 (18%)
Query: 513 DIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSP 572
DIVAPGVN+ + + G T + L+GTSM+ PHV+G AAL+K ++P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 573 AAIKSALMTTA 583
I++ L TA
Sbjct: 238 VQIRNHLKNTA 248
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 13/71 (18%)
Query: 513 DIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSP 572
DIVAPGVN+ + + G T + L+GTSM+ PHV+G AAL+K ++P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 573 AAIKSALMTTA 583
I++ L TA
Sbjct: 238 VQIRNHLKNTA 248
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 13/71 (18%)
Query: 513 DIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSP 572
DIVAPGVN+ + + G T + L+GTSM+ PHV+G AAL+K ++P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 573 AAIKSALMTTA 583
I++ L TA
Sbjct: 238 VQIRNHLKNTA 248
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 21/88 (23%)
Query: 495 AAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCP 554
A+FSS GP D++APGV+I S+LP + K+ SGT M+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSI---------QSTLPGN----KYGAKSGTXMASP 225
Query: 555 HVSGIAALLKARHPEWSPAAIKSALMTT 582
HV+G AAL+ ++HP W+ ++S+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 21/88 (23%)
Query: 495 AAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCP 554
A+FSS GP D++APGV+I S+LP + K+ SGT M+ P
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSIC---------STLPGN----KYGAKSGTXMASP 216
Query: 555 HVSGIAALLKARHPEWSPAAIKSALMTT 582
HV+G AAL+ ++HP W+ ++S+L T
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENT 244
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 21/88 (23%)
Query: 495 AAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCP 554
A+FSS GP D++APGV+I S+LP + K+ +GT M+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSI---------QSTLPGN----KYGAYNGTXMASP 225
Query: 555 HVSGIAALLKARHPEWSPAAIKSALMTT 582
HV+G AAL+ ++HP W+ ++S+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 21/88 (23%)
Query: 495 AAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCP 554
A+FSS GP D++APGV+I S+LP + K+ +GT M+ P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSI---------QSTLPGN----KYGAYNGTXMASP 225
Query: 555 HVSGIAALLKARHPEWSPAAIKSALMTT 582
HV+G AAL+ ++HP W+ ++S+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 13/71 (18%)
Query: 513 DIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSP 572
DIVAPGVN+ + + G T + L+GT M+ PHV+G AAL+K ++P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 573 AAIKSALMTTA 583
I++ L TA
Sbjct: 238 VQIRNHLKNTA 248
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 13/71 (18%)
Query: 513 DIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSP 572
DIVAPGVN+ + + G T + L+GT M+ PHV+G AAL+K ++P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 573 AAIKSALMTTA 583
I++ L TA
Sbjct: 238 VQIRNHLKNTA 248
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 13/71 (18%)
Query: 513 DIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSP 572
DIVAPGVN+ + + G T + L+GT M+ PHV+G AAL+K ++P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 573 AAIKSALMTTA 583
I++ L TA
Sbjct: 238 VQIRNHLKNTA 248
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 13/71 (18%)
Query: 513 DIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSP 572
DIVAPGVN+ + + G T + L+GT M+ PHV+G AAL+K ++P WS
Sbjct: 191 DIVAPGVNVQSTYPGST-------------YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 573 AAIKSALMTTA 583
I++ L TA
Sbjct: 238 VQIRNHLKNTA 248
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 21/88 (23%)
Query: 495 AAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCP 554
A+FSS GP D++APGV+I S+LP + K+ +GTS + P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSI---------QSTLPGN----KYGAYNGTSXASP 225
Query: 555 HVSGIAALLKARHPEWSPAAIKSALMTT 582
HV+G AAL+ ++HP W+ ++S+L T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 127/328 (38%), Gaps = 47/328 (14%)
Query: 308 AMEMGVFVSCSAGN----GGPDPVSLTN-----------VSPWITTVGASTLDRDFPATV 352
A GV + SAGN GG + L + + TV + + D+ TV
Sbjct: 177 AKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETV 236
Query: 353 KLGTGRTITGVSLYKGRRALLPNKQYPVVYMGXXXXXXXXLCLEGTLNPTTVAGKIVICD 412
++ T PNK Y Y + V GKI + +
Sbjct: 237 RVKTADQQDKEXPVLSTNRFEPNKAYDYAYANRGTKED---------DFKDVKGKIALIE 287
Query: 413 RGISPRVQKGQVVKDAGGIGVILANTAANGEEL-VADCHLLPAVAVGEIEGKEIKQYAST 471
RG K K AG +GV++ + G + + + PA + +G +K
Sbjct: 288 RGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQXPAAFISRKDGLLLKDNPQK 347
Query: 472 SPKATASLALLGTRVGIKPSPVVAAFSSRGPNFLTLE-ILKPDIVAPGVNILAAWSGETG 530
+ A+ +L T G K ++ FSS G LT + +KPDI APG +IL++ +
Sbjct: 348 TITFNATPKVLPTASGTK----LSRFSSWG---LTADGNIKPDIAAPGQDILSSVANN-- 398
Query: 531 PSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSPAAIKSALMTTA-YVHDNT 589
K+ LSGTS S P V+GI LL+ ++ P S + A V ++
Sbjct: 399 -----------KYAKLSGTSXSAPLVAGIXGLLQKQYETQYPDXTPSERLDLAKKVLXSS 447
Query: 590 HNPLKDASSYEPSSPYDHGAGHINPVKA 617
L D SP GAG ++ KA
Sbjct: 448 ATALYDEDEKAYFSPRQQGAGAVDAKKA 475
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 21/89 (23%)
Query: 495 AAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCP 554
A+FSS G D++APGV+I S+LP + +GTSM+ P
Sbjct: 187 ASFSSAGSEL--------DVMAPGVSI---------QSTLPGG----TYGAYNGTSMATP 225
Query: 555 HVSGIAALLKARHPEWSPAAIKSALMTTA 583
HV+G AAL+ ++HP W+ A ++ L +TA
Sbjct: 226 HVAGAAALILSKHPTWTNAQVRDRLESTA 254
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 52/95 (54%), Gaps = 8/95 (8%)
Query: 494 VAAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSC 553
VA FSSRGP +KPD++APG IL+A S SS A+H K+ + GTSM+
Sbjct: 202 VAQFSSRGP--TKDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDS-KYAYMGGTSMAT 258
Query: 554 PHVSGIAALL-----KARHPEWSPAAIKSALMTTA 583
P V+G A L K R P+ +K+AL+ A
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGA 293
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 21/89 (23%)
Query: 495 AAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCP 554
A+FSS G D++APGV+I + G T + +GT M+ P
Sbjct: 187 ASFSSVGSEL--------DVMAPGVSIQSTLPGGT-------------YGAYNGTXMATP 225
Query: 555 HVSGIAALLKARHPEWSPAAIKSALMTTA 583
HV+G AAL+ ++HP W+ A ++ L +TA
Sbjct: 226 HVAGAAALILSKHPTWTNAQVRDRLESTA 254
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 21/89 (23%)
Query: 495 AAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCP 554
A+FSS G D++APGV+I + G T + +GT M+ P
Sbjct: 187 ASFSSAGSEL--------DVMAPGVSIQSTLPGGT-------------YGAYNGTCMATP 225
Query: 555 HVSGIAALLKARHPEWSPAAIKSALMTTA 583
HV+G AAL+ ++HP W+ A ++ L +TA
Sbjct: 226 HVAGAAALILSKHPTWTNAQVRDRLESTA 254
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 16/90 (17%)
Query: 513 DIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSP 572
DI APG +I ++W + N +SGTSM+ PHV+G+AAL +P SP
Sbjct: 198 DIYAPGSSITSSWYTSNSAT-----------NTISGTSMASPHVAGVAALYLDENPNLSP 246
Query: 573 AAIKSALMTTAYVHDNTHNPLKDASSYEPS 602
A + + L T A T + + DA + P+
Sbjct: 247 AQVTNLLKTRA-----TADKVTDAKTGSPN 271
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 511 KPDIVAPGVNILAA----WSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKAR 566
DI P V++ A + G S+ ++ + +GTSM+ PHVSG+A L+ +
Sbjct: 326 NSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSY 385
Query: 567 HPEWSPAAIKSALMTTA 583
HPE S + +++AL TA
Sbjct: 386 HPECSASQVRAALNATA 402
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 494 VAAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSC 553
VA FSSRGP +KPD++APG IL+A S SS A+H K+ GTS +
Sbjct: 202 VAQFSSRGP--TKDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDS-KYAYXGGTSXAT 258
Query: 554 PHVSGIAALL-----KARHPEWSPAAIKSALMTTA 583
P V+G A L K R P+ +K+AL+ A
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGA 293
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 11/71 (15%)
Query: 513 DIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSP 572
D+ APG +I +AW +D L+GTSM+ PHV+G+AAL ++P +P
Sbjct: 196 DLFAPGASIPSAW--------YTSD---TATQTLNGTSMATPHVAGVAALYLEQNPSATP 244
Query: 573 AAIKSALMTTA 583
A++ SA++ A
Sbjct: 245 ASVASAILNGA 255
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 21/89 (23%)
Query: 495 AAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCP 554
A+FSS G +++APG + + + T + L+GTSM+ P
Sbjct: 187 ASFSSVGAEL--------EVMAPGAGVYSTYPTNT-------------YATLNGTSMASP 225
Query: 555 HVSGIAALLKARHPEWSPAAIKSALMTTA 583
HV+G AAL+ ++HP S + +++ L +TA
Sbjct: 226 HVAGAAALILSKHPNLSASQVRNRLSSTA 254
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 21/89 (23%)
Query: 495 AAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCP 554
A+FSS G +++APG + + + T + L+GTSM+ P
Sbjct: 187 ASFSSVGAEL--------EVMAPGAGVYSTYPTNT-------------YATLNGTSMASP 225
Query: 555 HVSGIAALLKARHPEWSPAAIKSALMTTA 583
HV+G AAL+ ++HP S + +++ L +TA
Sbjct: 226 HVAGAAALILSKHPNLSASQVRNRLSSTA 254
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 21/89 (23%)
Query: 495 AAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCP 554
A+FSS G +++APG + + + T + L+GTSM+ P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTYPTNT-------------YATLNGTSMASP 224
Query: 555 HVSGIAALLKARHPEWSPAAIKSALMTTA 583
HV+G AAL+ ++HP S + +++ L +TA
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 21/89 (23%)
Query: 495 AAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCP 554
A+FSS G +++APG + + + T + L+GTSM+ P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTYPTNT-------------YATLNGTSMASP 224
Query: 555 HVSGIAALLKARHPEWSPAAIKSALMTTA 583
HV+G AAL+ ++HP S + +++ L +TA
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 21/89 (23%)
Query: 495 AAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCP 554
A+FSS G +++APG + + + T + L+GTSM+ P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTYPTNT-------------YATLNGTSMASP 224
Query: 555 HVSGIAALLKARHPEWSPAAIKSALMTTA 583
HV+G AAL+ ++HP S + +++ L +TA
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 21/89 (23%)
Query: 495 AAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCP 554
A+FSS G +++APG + + + T + L+GTSM+ P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTYPTNT-------------YATLNGTSMASP 224
Query: 555 HVSGIAALLKARHPEWSPAAIKSALMTTA 583
HV+G AAL+ ++HP S + +++ L +TA
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 21/89 (23%)
Query: 495 AAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCP 554
A+FSS G +++APGV++ + + T + L+GTSM+ P
Sbjct: 186 ASFSSVGSEL--------EVMAPGVSVYSTYPSNT-------------YTSLNGTSMASP 224
Query: 555 HVSGIAALLKARHPEWSPAAIKSALMTTA 583
HV+G AAL+ +++P S + +++ L +TA
Sbjct: 225 HVAGAAALILSKYPTLSASQVRNRLSSTA 253
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 13/52 (25%)
Query: 177 GFQKHHCNRKIVGARVFYRGYEAATGKINEQNEYKSPRDQDGHGTHTAATVA 228
G H + K+VG F G T D +GHGTH A TVA
Sbjct: 34 GIASSHTDLKVVGGASFVSGESYNT-------------DGNGHGTHVAGTVA 72
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 15/97 (15%)
Query: 494 VAAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETG------PSSLPADHRRVKFNILS 547
VA FSSR + APGV IL+ GE ++PA + ++
Sbjct: 328 VAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGT-YDYYQ 378
Query: 548 GTSMSCPHVSGIAALLKARHPEWSPAAIKSALMTTAY 584
GTSM+ PHV+G+ A+L + P P I+ L TA+
Sbjct: 379 GTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAF 415
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 17/94 (18%)
Query: 494 VAAFSSRG----PNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGT 549
VA +SSRG ++ +I APG ++ + W +N +SGT
Sbjct: 203 VADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTW-------------YNGGYNTISGT 249
Query: 550 SMSCPHVSGIAALLKARHPEWSPAAIKSALMTTA 583
SM+ PHVSG+AA + A +P S ++S L A
Sbjct: 250 SMATPHVSGLAAKIWAENPSLSNTQLRSNLQERA 283
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 21/89 (23%)
Query: 495 AAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCP 554
A+FSS G +++APG + + + T + L+GT M+ P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTYPTNT-------------YATLNGTXMASP 224
Query: 555 HVSGIAALLKARHPEWSPAAIKSALMTTA 583
HV+G AAL+ ++HP S + +++ L +TA
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 17/98 (17%)
Query: 494 VAAFSSRGPNFLTLE--ILKPD--IVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGT 549
VA FSSRG + I K D I APG + + W + +SGT
Sbjct: 202 VADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYSTW-------------FDGGYATISGT 248
Query: 550 SMSCPHVSGIAALLKARHPEWSPAAIKSALMTTAYVHD 587
SM+ PH +G+AA + A+ P S ++ L T A V+D
Sbjct: 249 SMASPHAAGLAAKIWAQSPAASNVDVRGELQTRASVND 286
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 17/94 (18%)
Query: 494 VAAFSSRG----PNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGT 549
VA +SSRG ++ +I APG ++ + W +N +SGT
Sbjct: 203 VADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTW-------------YNGGYNTISGT 249
Query: 550 SMSCPHVSGIAALLKARHPEWSPAAIKSALMTTA 583
M+ PHVSG+AA + A +P S ++S L A
Sbjct: 250 XMATPHVSGLAAKIWAENPSLSNTQLRSNLQERA 283
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 31/130 (23%)
Query: 462 GKEIKQYASTSPKATASLALLG--TRVGIKPSPVVAAFSSRGPNFLTLEILKPDIVAPGV 519
G E + ++T P + ++ +G T GI+ A+FS+ G + D+ APG
Sbjct: 205 GNENQNASNTWPTSCNNVLSVGATTSRGIR-----ASFSNYG--------VDVDLAAPGQ 251
Query: 520 NILAAWSGETGPSSLPADHRR---VKFNILSGTSMSCPHVSGIAALL----KARHPEWSP 572
+IL S++ + RR ++ ++GTSM+ PHVSG+AAL+ + + +P
Sbjct: 252 DIL---------STVDSGTRRPVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTP 302
Query: 573 AAIKSALMTT 582
A +K L++T
Sbjct: 303 AELKDVLVST 312
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 31/130 (23%)
Query: 462 GKEIKQYASTSPKATASLALLG--TRVGIKPSPVVAAFSSRGPNFLTLEILKPDIVAPGV 519
G E + ++T P + ++ +G T GI+ A+FS+ G + D+ APG
Sbjct: 205 GNENQNASNTWPTSCNNVLSVGATTSRGIR-----ASFSNYG--------VDVDLAAPGQ 251
Query: 520 NILAAWSGETGPSSLPADHRR---VKFNILSGTSMSCPHVSGIAALL----KARHPEWSP 572
+IL S++ + RR ++ ++GTSM+ PHVSG+AAL+ + + +P
Sbjct: 252 DIL---------STVDSGTRRPVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTP 302
Query: 573 AAIKSALMTT 582
A +K L++T
Sbjct: 303 AELKDVLVST 312
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 13/54 (24%)
Query: 513 DIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKAR 566
D+VAPGV+I++ +G ++ +SGTSM+ PHV+G+AALL ++
Sbjct: 202 DVVAPGVDIVSTITGN-------------RYAYMSGTSMASPHVAGLAALLASQ 242
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 31/130 (23%)
Query: 462 GKEIKQYASTSPKATASLALLG--TRVGIKPSPVVAAFSSRGPNFLTLEILKPDIVAPGV 519
G E + ++T P + ++ +G T GI+ A+FS+ G + D+ APG
Sbjct: 205 GNENQNASNTWPTSCNNVLSVGATTSRGIR-----ASFSNYG--------VDVDLAAPGQ 251
Query: 520 NILAAWSGETGPSSLPADHRR---VKFNILSGTSMSCPHVSGIAALL----KARHPEWSP 572
+IL S++ + RR ++ ++GTSM+ PHVSG+AAL+ + + +P
Sbjct: 252 DIL---------STVDSGTRRPVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTP 302
Query: 573 AAIKSALMTT 582
A +K L++T
Sbjct: 303 AELKDVLVST 312
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 494 VAAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSC 553
+A+FS+R +P++ APGV+IL S+ P D + L GT+M+
Sbjct: 213 IASFSNR----------QPEVSAPGVDIL---------STYPDD----SYETLMGTAMAT 249
Query: 554 PHVSGIAALLKARH 567
PHVSG+ AL++A +
Sbjct: 250 PHVSGVVALIQAAY 263
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 494 VAAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSC 553
+A+FS+R +P++ APGV+IL S+ P D + L GT+M+
Sbjct: 211 IASFSNR----------QPEVSAPGVDIL---------STYPDD----SYETLMGTAMAT 247
Query: 554 PHVSGIAALLKARH 567
PHVSG+ AL++A +
Sbjct: 248 PHVSGVVALIQAAY 261
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 494 VAAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSC 553
+A+FS+R +P++ APGV+IL S+ P D + L GT+M+
Sbjct: 222 IASFSNR----------QPEVSAPGVDIL---------STYPDD----SYETLMGTAMAT 258
Query: 554 PHVSGIAALLKARH 567
PHVSG+ AL++A +
Sbjct: 259 PHVSGVVALIQAAY 272
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 494 VAAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSC 553
+A+FS+R +P++ APGV+IL S+ P D + L GT+M+
Sbjct: 291 IASFSNR----------QPEVSAPGVDIL---------STYPDD----SYETLMGTAMAT 327
Query: 554 PHVSGIAALLKARH 567
PHVSG+ AL++A +
Sbjct: 328 PHVSGVVALIQAAY 341
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 494 VAAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSC 553
+A+FS+R +P++ APGV+IL S+ P D + L GT+M+
Sbjct: 291 IASFSNR----------QPEVSAPGVDIL---------STYPDD----SYETLMGTAMAT 327
Query: 554 PHVSGIAALLKARH 567
PHVSG+ AL++A +
Sbjct: 328 PHVSGVVALIQAAY 341
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 494 VAAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSC 553
+A+FS+R +P++ APGV+IL S+ P D + L GT+M+
Sbjct: 291 IASFSNR----------QPEVSAPGVDIL---------STYPDD----SYETLMGTAMAT 327
Query: 554 PHVSGIAALLKARH 567
PHVSG+ AL++A +
Sbjct: 328 PHVSGVVALIQAAY 341
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 494 VAAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSC 553
+A+FS+R +P++ APGV+IL S+ P D + L GT+M+
Sbjct: 291 IASFSNR----------QPEVSAPGVDIL---------STYPDD----SYETLMGTAMAT 327
Query: 554 PHVSGIAALLKARH 567
PHVSG+ AL++A +
Sbjct: 328 PHVSGVVALIQAAY 341
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 494 VAAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSC 553
+A+FS+R +P++ APGV+IL S+ P D + L GT+M+
Sbjct: 222 IASFSNR----------QPEVSAPGVDIL---------STYPDD----SYETLMGTAMAT 258
Query: 554 PHVSGIAALLKARH 567
PHVSG+ AL++A +
Sbjct: 259 PHVSGVVALIQAAY 272
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 23/74 (31%)
Query: 494 VAAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSC 553
+A+FS+R +P++ APGV+IL S+ P D + L GT+M+
Sbjct: 288 IASFSNR----------QPEVSAPGVDIL---------STYPDD----SYETLMGTAMAT 324
Query: 554 PHVSGIAALLKARH 567
PHVSG+ AL++A +
Sbjct: 325 PHVSGVVALIQAAY 338
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 23/74 (31%)
Query: 494 VAAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSC 553
+A+FS+R +P++ APGV+IL S+ P D + L GT M+
Sbjct: 211 IASFSNR----------QPEVSAPGVDIL---------STYPDD----SYETLMGTXMAT 247
Query: 554 PHVSGIAALLKARH 567
PHVSG+ AL++A +
Sbjct: 248 PHVSGVVALIQAAY 261
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 23/74 (31%)
Query: 494 VAAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSC 553
+A+FS+R +P++ APGV+IL S+ P D + L GT M+
Sbjct: 211 IASFSNR----------QPEVSAPGVDIL---------STYPDD----SYETLMGTCMAT 247
Query: 554 PHVSGIAALLKARH 567
PHVSG+ AL++A +
Sbjct: 248 PHVSGVVALIQAAY 261
>pdb|3F7O|A Chain A, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
pdb|3F7O|B Chain B, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
Length = 284
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 13/51 (25%)
Query: 513 DIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALL 563
DI APG NIL+ W G T N +SGTSM+ PH+ G+ A L
Sbjct: 203 DIFAPGSNILSTWIGGT-------------TNTISGTSMATPHIVGLGAYL 240
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 24/109 (22%)
Query: 455 VAVGEIEGKEIKQYASTSPKATASLALLGTRVGIKPSPVVAAFSSRGPNFLTLEILKPDI 514
V V G + + A+TSP + ++ +G + V + FS+ G DI
Sbjct: 154 VFVAVAAGNDNRDAANTSPASEPTVCTVGA---TDSNDVRSTFSNYGRVV--------DI 202
Query: 515 VAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALL 563
APG +I + W G + N +SGTSM+ PH++G+AA L
Sbjct: 203 FAPGTSITSTWIGG-------------RTNTISGTSMATPHIAGLAAYL 238
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 8/51 (15%)
Query: 514 IVAPGVNILAAWS-GETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALL 563
+ APG NIL+ G+ GP R + + +GTSM+ PHVSG+AAL+
Sbjct: 247 LAAPGTNILSTIDVGQAGPV-------RSSYGMKAGTSMAAPHVSGVAALV 290
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 8/51 (15%)
Query: 514 IVAPGVNILAAWS-GETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALL 563
+ APG NIL+ G+ GP R + + +GTSM+ PHVSG+AAL+
Sbjct: 247 LAAPGTNILSTIDVGQAGPV-------RSSYGMKAGTSMAAPHVSGVAALV 290
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 13/51 (25%)
Query: 513 DIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALL 563
DI PG +IL+ W G + S +SGTSM+ PHV+G+AA L
Sbjct: 200 DIFGPGTDILSTWIGGSTRS-------------ISGTSMATPHVAGLAAYL 237
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 210 YKSPRDQDGHGTHTAATVAGSPVHG 234
Y S RD +GHGTH A TV GS +G
Sbjct: 60 YYSSRDGNGHGTHCAGTV-GSRTYG 83
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 13/51 (25%)
Query: 513 DIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALL 563
DI PG +IL+ W G + S +SGTSM+ PHV+G+AA L
Sbjct: 200 DIFGPGTSILSTWIGGSTRS-------------ISGTSMATPHVAGLAAYL 237
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 210 YKSPRDQDGHGTHTAATVAGSPVHG 234
Y S RD +GHGTH A TV GS +G
Sbjct: 60 YYSSRDGNGHGTHCAGTV-GSRTYG 83
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 13/51 (25%)
Query: 513 DIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALL 563
DI PG +IL+ W G + S +SGTSM+ PHV+G+AA L
Sbjct: 200 DIFGPGTSILSTWIGGSTRS-------------ISGTSMATPHVAGLAAYL 237
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 210 YKSPRDQDGHGTHTAATVAGSPVHG 234
Y S RD +GHGTH A TV GS +G
Sbjct: 60 YYSSRDGNGHGTHCAGTV-GSRTYG 83
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Query: 542 KFNILSGTSMSCPHVSGIAAL----LKARHPEWSPAAIKSALMTTA 583
K + +GTS + PHV+G AL LK ++ E+SP +IK A+ TA
Sbjct: 454 KSQLXNGTSXAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTA 499
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 15/71 (21%)
Query: 513 DIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSP 572
D+ APG +W T P+S A LSGTSM+ PHV+G+A LL ++ S
Sbjct: 201 DVAAPG-----SWIYSTYPTSTYAS--------LSGTSMATPHVAGVAGLLASQGR--SA 245
Query: 573 AAIKSALMTTA 583
+ I++A+ TA
Sbjct: 246 SNIRAAIENTA 256
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 13/71 (18%)
Query: 513 DIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSP 572
D+ APG I +AW + +SGTSM+ PHV+G+AAL + +P
Sbjct: 196 DLFAPGSQIKSAW-------------YDGGYKTISGTSMATPHVAGVAALYLQENNGLTP 242
Query: 573 AAIKSALMTTA 583
+ L + A
Sbjct: 243 LQLTGLLNSRA 253
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 18/120 (15%)
Query: 215 DQDGHGTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSGGCFSSDILSAV 274
D +GHGTH A T+ GS YG A+ ++ + V + SG +S ++S V
Sbjct: 66 DCNGHGTHVAGTIGGSQ----------YGVAKNVNI---VGVRVLSCSGSGTTSGVISGV 112
Query: 275 DRAVADXXXXXXXXXXXXXXXYHRDSLSIATFGAMEMGVFVSCSAGNGGPDPVSLTNVSP 334
D + +L A GA++ GV +AGN D N SP
Sbjct: 113 DWVAQNASGPSVANMSLGGG--QSTALDSAVQGAIQSGVSFMLAAGNSNADAC---NTSP 167
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 15/71 (21%)
Query: 513 DIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSP 572
D+ APG +I + + P+S A LSGTSM+ PHV+G+A LL ++ S
Sbjct: 201 DVAAPGSSIYSTY-----PTSTYAS--------LSGTSMATPHVAGVAGLLASQGR--SA 245
Query: 573 AAIKSALMTTA 583
+ I++A+ TA
Sbjct: 246 SNIRAAIENTA 256
>pdb|3HJR|A Chain A, Crystal Structure Of Serine Protease Of Aeromonas Sobria
Length = 600
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 545 ILSGTSMSCPHVSGIAALLKARHPEWSPAAIKSALMTTAYVHDNTHNPLKDASSYEPSSP 604
+++GTS + P SG ALL + +P+ S ++ L +A D H P+ SY S+
Sbjct: 331 VMNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLLARSATRVDAKHQPV--MVSYTSST- 387
Query: 605 YDHGAGHINPVKALD 619
G + VK L+
Sbjct: 388 -----GKVRDVKGLE 397
>pdb|4AKT|A Chain A, Patg Macrocyclase In Complex With Peptide
pdb|4AKT|B Chain B, Patg Macrocyclase In Complex With Peptide
Length = 360
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 16/81 (19%)
Query: 511 KPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPEW 570
K I+APG IL A P V+ L+GTSM+ P ++GI+ALL + +
Sbjct: 265 KEGILAPGEEILGAQ---------PCTEEPVR---LTGTSMAAPVMTGISALLMSLQVQQ 312
Query: 571 ----SPAAIKSALMTTAYVHD 587
A+++AL+ TA D
Sbjct: 313 GKPVDAEAVRTALLKTAIPCD 333
>pdb|4AKS|A Chain A, Patg Macrocyclase Domain
pdb|4AKS|B Chain B, Patg Macrocyclase Domain
Length = 360
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 16/81 (19%)
Query: 511 KPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPEW 570
K I+APG IL A P V+ L+GTSM+ P ++GI+ALL + +
Sbjct: 265 KEGILAPGEEILGAQ---------PCTEEPVR---LTGTSMAAPVMTGISALLMSLQVQQ 312
Query: 571 ----SPAAIKSALMTTAYVHD 587
A+++AL+ TA D
Sbjct: 313 GKPVDAEAVRTALLKTAIPCD 333
>pdb|4H6X|A Chain A, Structure Of Patellamide Maturation Protease Patg
pdb|4H6X|B Chain B, Structure Of Patellamide Maturation Protease Patg
Length = 357
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 16/81 (19%)
Query: 511 KPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPEW 570
K I+APG IL A P V+ L+GTSM+ P ++GI+ALL + +
Sbjct: 247 KEGILAPGEEILGAQ---------PCTEEPVR---LTGTSMAAPVMTGISALLMSLQVQQ 294
Query: 571 ----SPAAIKSALMTTAYVHD 587
A+++AL+ TA D
Sbjct: 295 GKPVDAEAVRTALLKTAIPCD 315
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Query: 546 LSGTSMSCPHVSGIAALLKA----RHPEWSPAAIKSALMTTA 583
LSGTS + P VSG+AALL + R + P +K+AL+ +A
Sbjct: 220 LSGTSFATPIVSGVAALLLSLQIKRGEKPDPQKVKNALLASA 261
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 13/51 (25%)
Query: 513 DIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALL 563
DIVAPGV I + + ++G + LSGT+M+ PHV+G AL+
Sbjct: 226 DIVAPGVGIKSTYL-DSG------------YAELSGTAMAAPHVAGALALI 263
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 13/51 (25%)
Query: 513 DIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALL 563
DIVAPGV I + + ++G + LSGT+M+ PHV+G AL+
Sbjct: 226 DIVAPGVGIKSTYL-DSG------------YAELSGTAMAAPHVAGALALI 263
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 13/51 (25%)
Query: 513 DIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALL 563
DIVAPGV I + + ++G + LSGT+M+ PHV+G AL+
Sbjct: 226 DIVAPGVGIKSTYL-DSG------------YAELSGTAMAAPHVAGALALI 263
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 13/51 (25%)
Query: 513 DIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALL 563
DIVAPGV I + + L + + LSGT+M+ PHV+G AL+
Sbjct: 208 DIVAPGVGIKSTY--------LDSGYAE-----LSGTAMAAPHVAGALALI 245
>pdb|3ZXX|A Chain A, Structure Of Self-cleaved Protease Domain Of Pata
Length = 307
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 17/79 (21%)
Query: 514 IVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALL---KARHPEW 570
I+APG +IL A G LSGTS + P VSG+AALL + R E
Sbjct: 207 ILAPGEDILGAKPGG-------------GTERLSGTSFATPIVSGVAALLLSEQVRRGET 253
Query: 571 -SPAAIKSALMTTAYVHDN 588
P ++ L+ +A D+
Sbjct: 254 PDPQKVRQLLLQSALPCDD 272
>pdb|4H6V|A Chain A, Structure Of Patellamide Maturation Protease Pata
Length = 306
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 17/79 (21%)
Query: 514 IVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALL---KARHPEW 570
I+APG +IL A G LSGTS + P VSG+AALL + R E
Sbjct: 198 ILAPGEDILGAKPGG-------------GTERLSGTSFATPIVSGVAALLLSEQVRRGET 244
Query: 571 -SPAAIKSALMTTAYVHDN 588
P ++ L+ +A D+
Sbjct: 245 PDPQKVRQLLLQSALPCDD 263
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,048,930
Number of Sequences: 62578
Number of extensions: 956544
Number of successful extensions: 2146
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1858
Number of HSP's gapped (non-prelim): 249
length of query: 769
length of database: 14,973,337
effective HSP length: 106
effective length of query: 663
effective length of database: 8,340,069
effective search space: 5529465747
effective search space used: 5529465747
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)