Query 044578
Match_columns 769
No_of_seqs 426 out of 3076
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 04:40:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044578.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044578hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 1.3E-52 2.9E-57 450.4 30.3 306 109-584 1-307 (307)
2 PTZ00262 subtilisin-like prote 100.0 1.4E-50 3.1E-55 450.4 23.4 303 116-624 292-618 (639)
3 cd07479 Peptidases_S8_SKI-1_li 100.0 1.4E-48 3.1E-53 406.4 24.6 243 131-587 1-254 (255)
4 cd05562 Peptidases_S53_like Pe 100.0 1.7E-48 3.7E-53 408.7 24.1 270 134-619 1-274 (275)
5 cd07497 Peptidases_S8_14 Pepti 100.0 3.1E-48 6.8E-53 412.6 24.4 286 137-583 1-311 (311)
6 cd07478 Peptidases_S8_CspA-lik 100.0 7.4E-48 1.6E-52 430.1 27.4 415 135-610 1-455 (455)
7 cd07475 Peptidases_S8_C5a_Pept 100.0 1.2E-47 2.5E-52 419.7 28.3 312 129-619 1-346 (346)
8 cd07489 Peptidases_S8_5 Peptid 100.0 8.3E-47 1.8E-51 406.6 27.2 295 128-623 3-302 (312)
9 cd07476 Peptidases_S8_thiazoli 100.0 3.7E-46 8.1E-51 390.0 25.2 246 130-588 2-254 (267)
10 cd07474 Peptidases_S8_subtilis 100.0 6.2E-45 1.4E-49 389.5 29.0 289 137-617 1-295 (295)
11 cd07483 Peptidases_S8_Subtilis 100.0 1.8E-45 3.8E-50 391.0 24.5 269 138-584 1-291 (291)
12 KOG1153 Subtilisin-related pro 100.0 2.4E-46 5.3E-51 387.8 17.0 331 30-584 78-461 (501)
13 cd05561 Peptidases_S8_4 Peptid 100.0 1.8E-45 3.8E-50 379.7 22.5 234 140-610 1-239 (239)
14 cd07481 Peptidases_S8_Bacillop 100.0 2.2E-44 4.7E-49 378.5 24.9 247 137-584 1-264 (264)
15 cd04857 Peptidases_S8_Tripepti 100.0 7.9E-44 1.7E-48 385.4 28.5 220 214-586 182-412 (412)
16 cd07493 Peptidases_S8_9 Peptid 100.0 3.8E-44 8.3E-49 376.1 24.3 243 139-584 1-261 (261)
17 cd07485 Peptidases_S8_Fervidol 100.0 1.2E-43 2.7E-48 374.6 24.2 263 129-582 1-273 (273)
18 cd04077 Peptidases_S8_PCSK9_Pr 100.0 3.7E-43 8.1E-48 367.5 25.7 232 130-585 17-255 (255)
19 cd07487 Peptidases_S8_1 Peptid 100.0 4.8E-43 1E-47 368.9 25.8 256 137-584 1-264 (264)
20 cd07484 Peptidases_S8_Thermita 100.0 9.6E-43 2.1E-47 365.6 25.6 250 118-586 9-259 (260)
21 cd07496 Peptidases_S8_13 Pepti 100.0 3.5E-42 7.7E-47 365.8 25.5 207 212-582 66-285 (285)
22 cd04847 Peptidases_S8_Subtilis 100.0 1.2E-42 2.5E-47 370.6 20.5 263 140-584 1-291 (291)
23 cd07490 Peptidases_S8_6 Peptid 100.0 8.9E-42 1.9E-46 357.1 24.9 253 139-584 1-254 (254)
24 cd07494 Peptidases_S8_10 Pepti 100.0 6.7E-42 1.5E-46 363.4 23.4 250 128-587 11-286 (298)
25 cd04842 Peptidases_S8_Kp43_pro 100.0 2.5E-41 5.5E-46 361.3 25.1 277 133-584 2-293 (293)
26 cd07480 Peptidases_S8_12 Pepti 100.0 5.9E-41 1.3E-45 358.2 24.1 265 132-616 2-297 (297)
27 cd07498 Peptidases_S8_15 Pepti 100.0 5.1E-41 1.1E-45 348.7 23.0 239 140-582 1-242 (242)
28 cd04843 Peptidases_S8_11 Pepti 100.0 3.7E-41 7.9E-46 353.7 21.5 244 128-584 5-277 (277)
29 cd07473 Peptidases_S8_Subtilis 100.0 2E-40 4.3E-45 347.9 25.5 249 138-584 2-259 (259)
30 cd07477 Peptidases_S8_Subtilis 100.0 8E-40 1.7E-44 336.9 23.8 226 139-582 1-229 (229)
31 cd07482 Peptidases_S8_Lantibio 100.0 7.1E-40 1.5E-44 350.3 23.4 150 139-326 1-159 (294)
32 PF00082 Peptidase_S8: Subtila 100.0 7.2E-41 1.6E-45 355.8 15.6 274 141-619 1-282 (282)
33 cd07491 Peptidases_S8_7 Peptid 100.0 5.8E-40 1.3E-44 339.1 20.6 155 137-342 2-169 (247)
34 cd04059 Peptidases_S8_Protein_ 100.0 8.5E-40 1.8E-44 350.1 19.1 248 127-584 28-297 (297)
35 cd07492 Peptidases_S8_8 Peptid 100.0 6.8E-39 1.5E-43 328.2 23.2 221 139-584 1-222 (222)
36 cd04848 Peptidases_S8_Autotran 100.0 9.4E-38 2E-42 329.0 21.7 242 136-584 1-267 (267)
37 KOG4266 Subtilisin kexin isozy 100.0 9.1E-37 2E-41 324.1 21.6 363 31-624 48-470 (1033)
38 KOG1114 Tripeptidyl peptidase 100.0 5.2E-33 1.1E-37 308.0 22.9 355 216-765 309-688 (1304)
39 cd07488 Peptidases_S8_2 Peptid 100.0 2E-33 4.4E-38 289.3 15.4 194 213-582 33-246 (247)
40 cd00306 Peptidases_S8_S53 Pept 100.0 8.1E-31 1.8E-35 270.7 24.6 195 213-582 40-241 (241)
41 COG1404 AprE Subtilisin-like s 99.9 1.1E-23 2.4E-28 241.6 23.1 250 128-585 130-398 (508)
42 KOG3526 Subtilisin-like propro 99.9 1.8E-23 3.8E-28 212.0 12.2 275 1-325 1-316 (629)
43 cd04056 Peptidases_S53 Peptida 99.7 3.2E-17 7E-22 179.3 14.0 101 244-347 82-199 (361)
44 cd02133 PA_C5a_like PA_C5a_lik 99.3 2E-11 4.4E-16 115.5 11.6 118 374-504 24-142 (143)
45 cd02120 PA_subtilisin_like PA_ 99.3 6.4E-11 1.4E-15 109.8 13.2 122 352-478 2-125 (126)
46 PF05922 Inhibitor_I9: Peptida 98.9 3.2E-09 7E-14 90.3 7.2 79 34-112 1-82 (82)
47 cd04816 PA_SaNapH_like PA_SaNa 98.7 4.1E-08 8.9E-13 90.3 9.4 97 378-477 19-120 (122)
48 cd02122 PA_GRAIL_like PA _GRAI 98.7 6.2E-08 1.3E-12 90.5 9.8 89 390-478 43-137 (138)
49 cd04818 PA_subtilisin_1 PA_sub 98.7 8.1E-08 1.7E-12 87.8 10.2 89 389-478 25-117 (118)
50 cd02127 PA_hPAP21_like PA_hPAP 98.7 8.7E-08 1.9E-12 87.0 9.9 88 391-479 21-116 (118)
51 PF06280 DUF1034: Fn3-like dom 98.7 2.3E-07 5E-12 83.9 11.3 80 682-762 8-112 (112)
52 cd02129 PA_hSPPL_like PA_hSPPL 98.6 1.2E-07 2.5E-12 85.6 8.9 92 376-472 20-115 (120)
53 PF02225 PA: PA domain; Inter 98.6 5.3E-08 1.1E-12 86.3 6.3 78 392-469 20-101 (101)
54 cd02124 PA_PoS1_like PA_PoS1_l 98.6 2.6E-07 5.7E-12 85.3 10.7 99 378-477 28-127 (129)
55 cd02125 PA_VSR PA_VSR: Proteas 98.6 3.3E-07 7.2E-12 84.4 11.1 88 391-478 22-126 (127)
56 KOG3525 Subtilisin-like propro 98.6 2.7E-07 5.8E-12 102.3 12.0 157 128-327 23-189 (431)
57 cd02126 PA_EDEM3_like PA_EDEM3 98.6 2E-07 4.3E-12 86.0 9.0 86 391-477 27-124 (126)
58 cd02130 PA_ScAPY_like PA_ScAPY 98.6 2.9E-07 6.3E-12 84.7 9.4 86 392-478 32-121 (122)
59 cd00538 PA PA: Protease-associ 98.5 3.1E-07 6.8E-12 84.9 9.3 86 392-477 31-124 (126)
60 cd02132 PA_GO-like PA_GO-like: 98.5 4.5E-07 9.7E-12 85.2 9.2 84 391-477 48-137 (139)
61 cd04813 PA_1 PA_1: Protease-as 98.4 7.9E-07 1.7E-11 80.6 8.7 81 390-472 26-112 (117)
62 cd04817 PA_VapT_like PA_VapT_l 98.4 7.7E-07 1.7E-11 82.7 8.6 74 399-472 50-134 (139)
63 COG4934 Predicted protease [Po 98.4 3E-06 6.5E-11 100.9 13.9 94 245-341 288-395 (1174)
64 cd02123 PA_C_RZF_like PA_C-RZF 98.4 1.7E-06 3.6E-11 82.6 9.2 84 391-474 50-142 (153)
65 cd04819 PA_2 PA_2: Protease-as 98.1 3.4E-05 7.4E-10 71.4 11.8 92 375-474 22-122 (127)
66 cd04815 PA_M28_2 PA_M28_2: Pro 97.4 0.00046 9.9E-09 64.4 8.1 78 400-477 34-132 (134)
67 cd02128 PA_TfR PA_TfR: Proteas 97.0 0.002 4.2E-08 62.8 7.3 72 401-472 51-156 (183)
68 PF14874 PapD-like: Flagellar- 96.7 0.032 6.9E-07 49.3 12.4 81 682-764 20-100 (102)
69 cd04814 PA_M28_1 PA_M28_1: Pro 96.5 0.0062 1.3E-07 57.0 6.7 64 375-440 19-100 (142)
70 cd04820 PA_M28_1_1 PA_M28_1_1: 96.4 0.0081 1.8E-07 55.8 6.4 63 376-440 22-96 (137)
71 cd04822 PA_M28_1_3 PA_M28_1_3: 96.0 0.017 3.6E-07 54.8 6.7 64 376-441 20-101 (151)
72 KOG2442 Uncharacterized conser 96.0 0.022 4.7E-07 62.1 7.9 81 401-481 91-177 (541)
73 KOG3920 Uncharacterized conser 95.5 0.018 3.9E-07 53.1 4.3 101 376-482 64-174 (193)
74 PF10633 NPCBM_assoc: NPCBM-as 95.1 0.088 1.9E-06 44.0 7.2 57 682-738 5-62 (78)
75 cd02131 PA_hNAALADL2_like PA_h 94.8 0.036 7.9E-07 51.8 4.5 39 402-440 37-75 (153)
76 cd02121 PA_GCPII_like PA_GCPII 94.3 0.065 1.4E-06 54.1 5.1 40 401-440 67-106 (220)
77 KOG4628 Predicted E3 ubiquitin 93.2 0.21 4.5E-06 53.4 6.9 81 392-472 63-150 (348)
78 PF11614 FixG_C: IG-like fold 92.5 0.65 1.4E-05 42.2 8.2 55 683-738 32-86 (118)
79 PF06030 DUF916: Bacterial pro 92.3 1.6 3.4E-05 39.9 10.4 79 669-752 17-120 (121)
80 cd04821 PA_M28_1_2 PA_M28_1_2: 88.3 1.2 2.7E-05 42.5 6.4 62 376-439 22-102 (157)
81 COG1470 Predicted membrane pro 86.6 5.4 0.00012 44.1 10.7 70 682-751 397-468 (513)
82 PF00635 Motile_Sperm: MSP (Ma 80.9 8.2 0.00018 34.1 8.0 54 682-738 18-71 (109)
83 PF07718 Coatamer_beta_C: Coat 79.4 16 0.00034 34.1 9.1 68 683-751 70-138 (140)
84 PF00345 PapD_N: Pili and flag 79.2 21 0.00046 32.3 10.3 67 683-751 15-89 (122)
85 KOG1114 Tripeptidyl peptidase 79.2 1.4 2.9E-05 52.3 2.7 24 134-157 77-100 (1304)
86 COG1470 Predicted membrane pro 77.6 29 0.00063 38.6 12.0 70 682-752 284-360 (513)
87 TIGR02745 ccoG_rdxA_fixG cytoc 74.6 13 0.00029 41.7 8.9 56 682-738 346-401 (434)
88 PF07610 DUF1573: Protein of u 71.8 13 0.00028 27.4 5.4 44 688-734 2-45 (45)
89 smart00635 BID_2 Bacterial Ig- 66.1 18 0.0004 30.2 6.0 42 711-756 4-45 (81)
90 PF07705 CARDB: CARDB; InterP 53.1 56 0.0012 27.9 7.1 52 682-737 19-72 (101)
91 PF04744 Monooxygenase_B: Mono 52.2 53 0.0011 35.6 7.7 67 682-752 263-362 (381)
92 PF12690 BsuPI: Intracellular 48.2 93 0.002 26.2 7.2 54 684-738 2-72 (82)
93 PF08821 CGGC: CGGC domain; I 43.0 1.2E+02 0.0026 27.0 7.4 67 245-317 30-104 (107)
94 PLN03080 Probable beta-xylosid 41.1 54 0.0012 40.1 6.6 53 683-736 685-744 (779)
95 PRK13203 ureB urease subunit b 40.0 70 0.0015 28.0 5.2 51 682-733 18-82 (102)
96 PRK15098 beta-D-glucoside gluc 39.7 70 0.0015 39.1 7.3 54 682-738 667-729 (765)
97 cd00407 Urease_beta Urease bet 39.5 72 0.0016 27.9 5.2 51 682-733 18-82 (101)
98 PF00927 Transglut_C: Transglu 39.4 1.4E+02 0.003 26.2 7.4 56 682-738 15-78 (107)
99 PRK13202 ureB urease subunit b 37.4 83 0.0018 27.6 5.2 49 684-733 21-83 (104)
100 TIGR00192 urease_beta urease, 36.7 86 0.0019 27.4 5.2 51 682-733 18-82 (101)
101 PF00699 Urease_beta: Urease b 35.5 86 0.0019 27.3 5.0 16 682-697 17-32 (100)
102 PF08260 Kinin: Insect kinin p 35.0 18 0.00039 16.4 0.5 6 496-501 3-8 (8)
103 PRK13204 ureB urease subunit b 33.1 1.6E+02 0.0035 27.7 6.7 51 682-733 41-105 (159)
104 PF02845 CUE: CUE domain; Int 30.4 48 0.001 23.8 2.4 24 560-583 5-28 (42)
105 PRK13201 ureB urease subunit b 30.0 1.1E+02 0.0024 28.1 5.0 51 682-733 18-82 (136)
106 PF05506 DUF756: Domain of unk 29.9 3.4E+02 0.0074 22.9 9.1 54 684-745 20-73 (89)
107 PRK15019 CsdA-binding activato 29.9 47 0.001 31.4 2.8 33 544-577 77-109 (147)
108 PRK13205 ureB urease subunit b 28.8 1.2E+02 0.0026 28.4 5.2 51 682-733 18-82 (162)
109 TIGR03391 FeS_syn_CsdE cystein 28.5 52 0.0011 30.8 2.9 35 543-578 71-105 (138)
110 TIGR03079 CH4_NH3mon_ox_B meth 28.1 62 0.0013 35.0 3.6 52 682-737 282-355 (399)
111 COG0832 UreB Urea amidohydrola 27.8 1.3E+02 0.0029 26.1 4.9 50 682-732 18-81 (106)
112 PF09244 DUF1964: Domain of un 27.3 1.1E+02 0.0024 24.0 3.9 36 718-753 15-53 (68)
113 COG1570 XseA Exonuclease VII, 27.2 1.8E+02 0.0039 32.6 7.2 75 246-323 157-236 (440)
114 PF02601 Exonuc_VII_L: Exonucl 27.0 2E+02 0.0044 30.8 7.7 72 249-323 39-118 (319)
115 TIGR01451 B_ant_repeat conserv 26.9 1.9E+02 0.0041 22.0 5.3 38 682-721 12-50 (53)
116 PRK09296 cysteine desufuration 25.4 63 0.0014 30.2 2.8 33 544-577 67-99 (138)
117 PF13940 Ldr_toxin: Toxin Ldr, 24.9 56 0.0012 22.3 1.7 13 551-563 14-26 (35)
118 COG2166 sufE Cysteine desulfur 24.4 62 0.0013 30.3 2.6 34 543-577 71-104 (144)
119 PF02657 SufE: Fe-S metabolism 23.5 75 0.0016 29.1 3.0 34 544-578 58-91 (125)
120 PRK13198 ureB urease subunit b 22.8 1.8E+02 0.004 27.4 5.2 51 682-733 46-110 (158)
121 PRK15308 putative fimbrial pro 22.5 2.6E+02 0.0057 28.7 6.9 53 683-736 32-100 (234)
122 PF08626 TRAPPC9-Trs120: Trans 22.5 3.8E+02 0.0081 34.7 9.9 83 682-768 799-921 (1185)
123 PF04255 DUF433: Protein of un 21.1 78 0.0017 24.4 2.2 39 542-580 10-54 (56)
124 PF00553 CBM_2: Cellulose bind 20.3 5.7E+02 0.012 22.1 9.1 31 683-713 14-45 (101)
125 PRK09918 putative fimbrial cha 20.0 6.3E+02 0.014 25.8 9.2 51 683-736 39-94 (230)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.3e-52 Score=450.37 Aligned_cols=306 Identities=58% Similarity=0.996 Sum_probs=259.8
Q ss_pred eccccCCCCcccCcCCCCCCCccccCCCCCCcEEEEeccccCCCCCCcccCCCCCCCCccccccccCCCcccccCCceeE
Q 044578 109 YELHTTRSPLFLGLEPADSTSIWSQKVADYDVIVGVLDTGIWPESASFNDTGMTPVPAHWKGACETGRGFQKHHCNRKIV 188 (769)
Q Consensus 109 ~~~~~~~s~~~~g~~~~~~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~ki~ 188 (769)
+++++++++.++++.......+|..+.+|+||+|||||||||++||+|.+....+++..|.+.|..+..+...+|++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 80 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKLI 80 (307)
T ss_pred CCccccCCHHHcCCCCCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeEE
Confidence 46788899999999776333357789999999999999999999999999988999999999999998887788999999
Q ss_pred eeEecccchhhccCcccccCCCCCCCCCCCChhhhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeCC-CCCH
Q 044578 189 GARVFYRGYEAATGKINEQNEYKSPRDQDGHGTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSG-GCFS 267 (769)
Q Consensus 189 g~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g~~~ 267 (769)
+.++|.++++.... .+...+..++.|..||||||||||||+...+....|...+.+.||||+|+|+++|+++.. .+..
T Consensus 81 g~~~~~~~~~~~~~-~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~~ 159 (307)
T cd04852 81 GARYFSDGYDAYGG-FNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFG 159 (307)
T ss_pred EEEEcccchhhccC-cccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCccH
Confidence 99999887654322 123444566889999999999999999877665566666778999999999999999984 4888
Q ss_pred HHHHHHHHHHHhCCCcEEEeccCCCCCCCccchHHHHHHHHHhcCcEEEEecCCCCCCCCcccCCCCceEEecCCCCCCc
Q 044578 268 SDILSAVDRAVADGVNVLSISLGGGVSSYHRDSLSIATFGAMEMGVFVSCSAGNGGPDPVSLTNVSPWITTVGASTLDRD 347 (769)
Q Consensus 268 sdi~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~ 347 (769)
+++++||++|++++++|||||||........+.+..+++++.++|++||+||||+|+.....++..||+++|||.+
T Consensus 160 ~~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~---- 235 (307)
T cd04852 160 SDILAAIDQAIADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST---- 235 (307)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc----
Confidence 9999999999999999999999987655566778888888999999999999999988888888999999999710
Q ss_pred eeeEEEeCCCcEEEEEEeccCCcCCCCCccccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhh
Q 044578 348 FPATVKLGTGRTITGVSLYKGRRALLPNKQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKD 427 (769)
Q Consensus 348 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~ 427 (769)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEEecCCCCCccccccccccceEEEChhhhHHHHHHHhcCCCceEEEEecceeecccCCCeeccccCCCCCCCCC
Q 044578 428 AGGIGVILANTAANGEELVADCHLLPAVAVGEIEGKEIKQYASTSPKATASLALLGTRVGIKPSPVVAAFSSRGPNFLTL 507 (769)
Q Consensus 428 ~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~GP~~~~~ 507 (769)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccCeeeeCCCceeecccCCCCCCCCCCCccccceeeeccccchhhhhHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044578 508 EILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSPAAIKSALMTTAY 584 (769)
Q Consensus 508 ~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 584 (769)
+||||+|||.+|++++..... .........|..++|||||||+|||++|||+|++|+|+|.|||++|++||+
T Consensus 236 --~~~di~apG~~i~~~~~~~~~---~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 236 --LKPDIAAPGVDILAAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred --CccceeeccCceeecccCccc---cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 477999999999999875311 111222347999999999999999999999999999999999999999985
No 2
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=1.4e-50 Score=450.38 Aligned_cols=303 Identities=18% Similarity=0.192 Sum_probs=217.2
Q ss_pred CCcccCcCCCCCCCccc--cCCCCCCcEEEEeccccCCCCCCcccCCCCCCCCccccccccCCCcccccCCcee---Eee
Q 044578 116 SPLFLGLEPADSTSIWS--QKVADYDVIVGVLDTGIWPESASFNDTGMTPVPAHWKGACETGRGFQKHHCNRKI---VGA 190 (769)
Q Consensus 116 s~~~~g~~~~~~~~~~~--~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~ki---~g~ 190 (769)
...+|+++.+..+++|+ .+.+|+||+|||||||||++||||.++-... +....|.. +++. .++.. +.+
T Consensus 292 ~~~qWgLd~i~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n-~~el~Grd----giDd--D~nG~vdd~~G 364 (639)
T PTZ00262 292 RNLQWGLDLTRLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVN-VKELHGRK----GIDD--DNNGNVDDEYG 364 (639)
T ss_pred cccCcCcchhCchHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccc-cccccCcc----cccc--ccCCccccccc
Confidence 34568888776667776 4568999999999999999999998641000 00011110 0000 01111 112
Q ss_pred EecccchhhccCcccccCCCCCCCCCCCChhhhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeCCC-CCHHH
Q 044578 191 RVFYRGYEAATGKINEQNEYKSPRDQDGHGTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSGG-CFSSD 269 (769)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~sd 269 (769)
++|.++ ..+|.|..||||||||||||...++.+ +.||||+|+|+++|+++..| +..++
T Consensus 365 ~nfVd~-------------~~~P~D~~GHGTHVAGIIAA~gnN~~G--------i~GVAP~AkLi~vKVld~~G~G~~sd 423 (639)
T PTZ00262 365 ANFVNN-------------DGGPMDDNYHGTHVSGIISAIGNNNIG--------IVGVDKRSKLIICKALDSHKLGRLGD 423 (639)
T ss_pred ccccCC-------------CCCCCCCCCcchHHHHHHhccccCCCc--------eeeeecccccceEEEecCCCCccHHH
Confidence 222221 234788999999999999998654322 38999999999999998877 78899
Q ss_pred HHHHHHHHHhCCCcEEEeccCCCCCCCccchHHHHHHHHHhcCcEEEEecCCCCCCCCc--------------ccC----
Q 044578 270 ILSAVDRAVADGVNVLSISLGGGVSSYHRDSLSIATFGAMEMGVFVSCSAGNGGPDPVS--------------LTN---- 331 (769)
Q Consensus 270 i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~--------------~~~---- 331 (769)
+++||+||++.|++|||||||+.. ....+..++.+|.++|++||+||||+|..... ++.
T Consensus 424 I~~AI~yA~~~GA~VINmSlG~~~---~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~ 500 (639)
T PTZ00262 424 MFKCFDYCISREAHMINGSFSFDE---YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSK 500 (639)
T ss_pred HHHHHHHHHHCCCCEEEeccccCC---ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhc
Confidence 999999999999999999999753 23456777779999999999999999864321 111
Q ss_pred CCCceEEecCCCCCCceeeEEEeCCCcEEEEEEeccCCcCCCCCccccEEEecCCCCCCCCcccCCCCCCCCccceEEEE
Q 044578 332 VSPWITTVGASTLDRDFPATVKLGTGRTITGVSLYKGRRALLPNKQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVIC 411 (769)
Q Consensus 332 ~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~ 411 (769)
..|++|+|||...+..
T Consensus 501 ~~~nVIaVGAv~~d~~---------------------------------------------------------------- 516 (639)
T PTZ00262 501 KLRNVITVSNLIKDKN---------------------------------------------------------------- 516 (639)
T ss_pred cCCCEEEEeeccCCCC----------------------------------------------------------------
Confidence 2355666665321100
Q ss_pred eCCCCchhhhhHHHhhcCceEEEEecCCCCCccccccccccceEEEChhhhHHHHHHHhcCCCceEEEEecceeecccCC
Q 044578 412 DRGISPRVQKGQVVKDAGGIGVILANTAANGEELVADCHLLPAVAVGEIEGKEIKQYASTSPKATASLALLGTRVGIKPS 491 (769)
Q Consensus 412 ~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (769)
..
T Consensus 517 ------------------------------------------------------------------------------~~ 518 (639)
T PTZ00262 517 ------------------------------------------------------------------------------NQ 518 (639)
T ss_pred ------------------------------------------------------------------------------Cc
Confidence 00
Q ss_pred CeeccccCCCCCCCCCCcccCeeeeCCCceeecccCCCCCCCCCCCccccceeeeccccchhhhhHHHHHHHHhhCCCCC
Q 044578 492 PVVAAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPEWS 571 (769)
Q Consensus 492 ~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls 571 (769)
..++.||++|. .++||+|||++|+|+++.+ .|..++|||||||||||+||||++++|+|+
T Consensus 519 ~s~s~~Snyg~-------~~VDIaAPG~dI~St~p~g-------------~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT 578 (639)
T PTZ00262 519 YSLSPNSFYSA-------KYCQLAAPGTNIYSTFPKN-------------SYRKLNGTSMAAPHVAAIASLILSINPSLS 578 (639)
T ss_pred ccccccccCCC-------CcceEEeCCCCeeeccCCC-------------ceeecCCCchhHHHHHHHHHHHHhhCCCCC
Confidence 13445667662 2349999999999998865 799999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCCCCCCcccCccccCCCCcee
Q 044578 572 PAAIKSALMTTAYVHDNTHNPLKDASSYEPSSPYDHGAGHINPVKALDPGLIY 624 (769)
Q Consensus 572 p~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vd~~~Al~~~lv~ 624 (769)
++||+++|++||.+++... ....| .|+||+.+|++..+-+
T Consensus 579 ~~qV~~iL~~TA~~l~~~~------------n~~~w-gG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 579 YEEVIRILKESIVQLPSLK------------NKVKW-GGYLDIHHAVNLAIAS 618 (639)
T ss_pred HHHHHHHHHHhCccCCCCC------------Ccccc-CcEEcHHHHHHHHHhc
Confidence 9999999999998763211 11123 3899999999866543
No 3
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=1.4e-48 Score=406.40 Aligned_cols=243 Identities=27% Similarity=0.361 Sum_probs=197.2
Q ss_pred cccCCCCCCcEEEEeccccCCCCCCcccCCCCCCCCccccccccCCCcccccCCceeEeeEecccchhhccCcccccCCC
Q 044578 131 WSQKVADYDVIVGVLDTGIWPESASFNDTGMTPVPAHWKGACETGRGFQKHHCNRKIVGARVFYRGYEAATGKINEQNEY 210 (769)
Q Consensus 131 ~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~ 210 (769)
|+++++|+||+|||||||||.+||+|.+.. ...+|.. .
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~----------------------------~~~~~~~--------------~ 38 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVK----------------------------ERTNWTN--------------E 38 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccc----------------------------cccccCC--------------C
Confidence 889999999999999999999999996320 0011111 1
Q ss_pred CCCCCCCCChhhhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeCCC-CCHHHHHHHHHHHHhCCCcEEEecc
Q 044578 211 KSPRDQDGHGTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSGG-CFSSDILSAVDRAVADGVNVLSISL 289 (769)
Q Consensus 211 ~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~sdi~~ai~~a~~~g~dVIn~Sl 289 (769)
....|..||||||||||+|+.. .+.||||+|+|+.+|++.+.+ +..++++++++||++++++||||||
T Consensus 39 ~~~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~ 107 (255)
T cd07479 39 KTLDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSI 107 (255)
T ss_pred CCCCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeec
Confidence 1355788999999999999842 138999999999999998776 6677899999999999999999999
Q ss_pred CCCCCCCccchHHHHHHHHHhcCcEEEEecCCCCCCCCc--ccCCCCceEEecCCCCCCceeeEEEeCCCcEEEEEEecc
Q 044578 290 GGGVSSYHRDSLSIATFGAMEMGVFVSCSAGNGGPDPVS--LTNVSPWITTVGASTLDRDFPATVKLGTGRTITGVSLYK 367 (769)
Q Consensus 290 G~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~--~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~~~~ 367 (769)
|+.. +....+..++.++.++|++||+||||+|+...+ .+...+++|+|||..
T Consensus 108 G~~~--~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~------------------------ 161 (255)
T cd07479 108 GGPD--FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGID------------------------ 161 (255)
T ss_pred cCCC--CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeec------------------------
Confidence 9753 233456666678889999999999999975433 456678889998732
Q ss_pred CCcCCCCCccccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCCCCccccc
Q 044578 368 GRRALLPNKQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAANGEELVA 447 (769)
Q Consensus 368 ~~~~~~~~~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~ 447 (769)
T Consensus 162 -------------------------------------------------------------------------------- 161 (255)
T cd07479 162 -------------------------------------------------------------------------------- 161 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccceEEEChhhhHHHHHHHhcCCCceEEEEecceeecccCCCeeccccCCCCCCC----CCCcccCeeeeCCCceee
Q 044578 448 DCHLLPAVAVGEIEGKEIKQYASTSPKATASLALLGTRVGIKPSPVVAAFSSRGPNFL----TLEILKPDIVAPGVNILA 523 (769)
Q Consensus 448 ~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~GP~~~----~~~~lKPDI~APG~~I~s 523 (769)
..+.++.|||+|++.. ..+++||||+|||.+|++
T Consensus 162 ------------------------------------------~~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~ 199 (255)
T cd07479 162 ------------------------------------------FDDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYG 199 (255)
T ss_pred ------------------------------------------cCCccccccCCCCCcccccCCCCCcCccEEecCCCeec
Confidence 1236788999996531 247889999999999998
Q ss_pred cccCCCCCCCCCCCccccceeeeccccchhhhhHHHHHHHHhhCC----CCCHHHHHHHHHhcccccC
Q 044578 524 AWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHP----EWSPAAIKSALMTTAYVHD 587 (769)
Q Consensus 524 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p----~lsp~~ik~~L~~TA~~~~ 587 (769)
+.... .|..++|||||||||||++|||+|++| .++|.+||++|++||++++
T Consensus 200 ~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 200 SKLKG-------------GCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred cccCC-------------CeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 76543 788999999999999999999999998 7999999999999999864
No 4
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=1.7e-48 Score=408.67 Aligned_cols=270 Identities=21% Similarity=0.251 Sum_probs=201.8
Q ss_pred CCCCCCcEEEEeccccCCCCCCcccCCCCCCCCccccccccCCCcccccCCceeEeeEecccchhhccCcccccCCCCCC
Q 044578 134 KVADYDVIVGVLDTGIWPESASFNDTGMTPVPAHWKGACETGRGFQKHHCNRKIVGARVFYRGYEAATGKINEQNEYKSP 213 (769)
Q Consensus 134 ~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~ 213 (769)
+++|+||+|+|||||||.+||++.+..-+. +.+...+... ....
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~-----------------------l~~~~~~~~~-------------~~~~ 44 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGD-----------------------LPGNVNVLGD-------------LDGG 44 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCC-----------------------CCcceeeccc-------------cCCC
Confidence 579999999999999999998654321111 1111111110 1125
Q ss_pred CCCCCChhhhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeCCCCCHHHHHHHHHHHHhCCCcEEEeccCCCC
Q 044578 214 RDQDGHGTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSGGCFSSDILSAVDRAVADGVNVLSISLGGGV 293 (769)
Q Consensus 214 ~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~sdi~~ai~~a~~~g~dVIn~SlG~~~ 293 (769)
.|..+||||||||| .||||+|+|+.+|+. ...+++++||+|++++|++|||||||...
T Consensus 45 ~d~~gHGT~vAgii------------------~GvAP~a~l~~~~~~----~~~~~i~~ai~~a~~~g~~Vin~S~g~~~ 102 (275)
T cd05562 45 SGGGDEGRAMLEII------------------HDIAPGAELAFHTAG----GGELDFAAAIRALAAAGADIIVDDIGYLN 102 (275)
T ss_pred CCCCchHHHHHHHH------------------hccCCCCEEEEEecC----CCHHHHHHHHHHHHHcCCCEEEecccccC
Confidence 67889999999999 499999999999874 35789999999999999999999999865
Q ss_pred CCC-ccchHHHHHHHHHhc-CcEEEEecCCCCCCCC-cccCCCCceEEecCCCCCCceeeEEEeCCCcEEEEEEeccCCc
Q 044578 294 SSY-HRDSLSIATFGAMEM-GVFVSCSAGNGGPDPV-SLTNVSPWITTVGASTLDRDFPATVKLGTGRTITGVSLYKGRR 370 (769)
Q Consensus 294 ~~~-~~~~~~~~~~~a~~~-Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 370 (769)
.+. ....+..++.++.++ |++||+||||+|.... ..+...|++|+|||.+.+.......
T Consensus 103 ~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s------------------ 164 (275)
T cd05562 103 EPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS------------------ 164 (275)
T ss_pred CCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc------------------
Confidence 443 334577777788887 9999999999998643 4567889999999965332100000
Q ss_pred CCCCCccccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCCCCcccccccc
Q 044578 371 ALLPNKQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAANGEELVADCH 450 (769)
Q Consensus 371 ~~~~~~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~ 450 (769)
|.. +
T Consensus 165 -----------------------~~~----~------------------------------------------------- 168 (275)
T cd05562 165 -----------------------DPA----P------------------------------------------------- 168 (275)
T ss_pred -----------------------ccc----c-------------------------------------------------
Confidence 000 0
Q ss_pred ccceEEEChhhhHHHHHHHhcCCCceEEEEecceeecccCCCeeccccCCCCCCCCCCcccCeeeeCCC-ceeecccCCC
Q 044578 451 LLPAVAVGEIEGKEIKQYASTSPKATASLALLGTRVGIKPSPVVAAFSSRGPNFLTLEILKPDIVAPGV-NILAAWSGET 529 (769)
Q Consensus 451 ~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~-~I~sa~~~~~ 529 (769)
.......+.||++||+. ++++||||+|||+ ++.++...+
T Consensus 169 -------------------------------------~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~~- 208 (275)
T cd05562 169 -------------------------------------GGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDGD- 208 (275)
T ss_pred -------------------------------------CCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCcCC-
Confidence 00011345688899987 4789999999975 445544332
Q ss_pred CCCCCCCCccccceeeeccccchhhhhHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCCCCCC
Q 044578 530 GPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSPAAIKSALMTTAYVHDNTHNPLKDASSYEPSSPYDHGA 609 (769)
Q Consensus 530 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~ 609 (769)
.|..++|||||||||||++|||+|++|+|++.+||++|++||+++.. +..+..|||
T Consensus 209 ------------~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~------------~g~d~~~G~ 264 (275)
T cd05562 209 ------------GPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGE------------PGYDNASGS 264 (275)
T ss_pred ------------ceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC------------CCCCCCcCc
Confidence 79999999999999999999999999999999999999999988742 234459999
Q ss_pred cccCccccCC
Q 044578 610 GHINPVKALD 619 (769)
Q Consensus 610 G~vd~~~Al~ 619 (769)
|+||+.+|++
T Consensus 265 G~vda~~Av~ 274 (275)
T cd05562 265 GLVDADRAVA 274 (275)
T ss_pred CcccHHHHhh
Confidence 9999999986
No 5
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.1e-48 Score=412.61 Aligned_cols=286 Identities=29% Similarity=0.332 Sum_probs=189.7
Q ss_pred CCCcEEEEeccccCCCCCCcccCCCCCCCCccccccccCCCcccccCCceeEeeEecccchhhccCcccccCCCCCCCCC
Q 044578 137 DYDVIVGVLDTGIWPESASFNDTGMTPVPAHWKGACETGRGFQKHHCNRKIVGARVFYRGYEAATGKINEQNEYKSPRDQ 216 (769)
Q Consensus 137 G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~D~ 216 (769)
|+||+|||||||||++||||.++... .|.. .|+ +...+. .+++.... ....+.|+
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~------~~d---~~~~~~------~g~d~~~~------~~~~~~D~ 55 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKL------KFD---YKAYLL------PGMDKWGG------FYVIMYDF 55 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----Cccc------ccC---cCCCcc------CCcCCCCC------ccCCCCCc
Confidence 89999999999999999999754110 0100 000 000111 11111100 11236789
Q ss_pred CCChhhhhHhhccCCCCCCCcccc-ccccceeeccCceEEEEEEeeCCC-CCHHHHHH-------HHHHHH--hCCCcEE
Q 044578 217 DGHGTHTAATVAGSPVHGANLLGY-AYGTARGMSTGARIAVYKVCWSGG-CFSSDILS-------AVDRAV--ADGVNVL 285 (769)
Q Consensus 217 ~gHGThVAGiiag~~~~~~~~~G~-~~g~~~GvAP~A~l~~~kv~~~~g-~~~sdi~~-------ai~~a~--~~g~dVI 285 (769)
+||||||||||||......+.+++ ....+.||||+|+|+.+|++...+ .....+.. +++|.+ +++++||
T Consensus 56 ~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VI 135 (311)
T cd07497 56 FSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVI 135 (311)
T ss_pred cccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEE
Confidence 999999999999986543322211 122358999999999999997544 32233333 344443 6799999
Q ss_pred EeccCCCCCCCc-----cchHHHHHHH-HHhcCcEEEEecCCCCCCCC--cccCCCCceEEecCCCCCCceeeEEEeCCC
Q 044578 286 SISLGGGVSSYH-----RDSLSIATFG-AMEMGVFVSCSAGNGGPDPV--SLTNVSPWITTVGASTLDRDFPATVKLGTG 357 (769)
Q Consensus 286 n~SlG~~~~~~~-----~~~~~~~~~~-a~~~Gi~vV~AAGN~G~~~~--~~~~~~p~vitVgA~~~~~~~~~~~~~~~g 357 (769)
|||||.....+. .+........ +.++|+++|+||||+|+... ..+..++++|+|||++.....+.+
T Consensus 136 N~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~------ 209 (311)
T cd07497 136 SNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFY------ 209 (311)
T ss_pred EecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchh------
Confidence 999997542211 1222323322 23899999999999997643 456678999999996532110000
Q ss_pred cEEEEEEeccCCcCCCCCccccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEec
Q 044578 358 RTITGVSLYKGRRALLPNKQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILAN 437 (769)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n 437 (769)
.+.+
T Consensus 210 ---------------------~~~~------------------------------------------------------- 213 (311)
T cd07497 210 ---------------------LFGY------------------------------------------------------- 213 (311)
T ss_pred ---------------------hhcc-------------------------------------------------------
Confidence 0000
Q ss_pred CCCCCccccccccccceEEEChhhhHHHHHHHhcCCCceEEEEecceeecccCCCeeccccCCCCCCCCCCcccCeeeeC
Q 044578 438 TAANGEELVADCHLLPAVAVGEIEGKEIKQYASTSPKATASLALLGTRVGIKPSPVVAAFSSRGPNFLTLEILKPDIVAP 517 (769)
Q Consensus 438 ~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~AP 517 (769)
.....+.++.||||||+. ++++||||+||
T Consensus 214 -------------------------------------------------~~~~~~~~~~fSs~Gp~~--~g~~kPdv~Ap 242 (311)
T cd07497 214 -------------------------------------------------LPGGSGDVVSWSSRGPSI--AGDPKPDLAAI 242 (311)
T ss_pred -------------------------------------------------ccCCCCCccccccCCCCc--ccCCCCceecc
Confidence 001234789999999998 58999999999
Q ss_pred CCceeecccCCCCCCCCCCCccccceeeeccccchhhhhHHHHHHHHhhCC------CCCHHHHHHHHHhcc
Q 044578 518 GVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHP------EWSPAAIKSALMTTA 583 (769)
Q Consensus 518 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p------~lsp~~ik~~L~~TA 583 (769)
|++|+++.+...... .......|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 243 G~~i~s~~~~~~~~~---~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 243 GAFAWAPGRVLDSGG---ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred CcceEeecccCCCCc---ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 999999876542100 011123799999999999999999999999976 689999999999997
No 6
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=7.4e-48 Score=430.11 Aligned_cols=415 Identities=22% Similarity=0.236 Sum_probs=235.8
Q ss_pred CCCCCcEEEEeccccCCCCCCcccC-CCCCCCCccccccccCCCcccccCCceeEeeEecccchhhccCcccccCCCCCC
Q 044578 135 VADYDVIVGVLDTGIWPESASFNDT-GMTPVPAHWKGACETGRGFQKHHCNRKIVGARVFYRGYEAATGKINEQNEYKSP 213 (769)
Q Consensus 135 ~~G~Gv~VgVIDtGid~~Hp~f~~~-~~~~~~~~w~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~ 213 (769)
.+|+||+||||||||||.||+|++. +.+++...|++....+..-. ...+...+.............+......
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~~------~~~~~~~~~~~~i~~~~~~~~p~~~~~~ 74 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPPG------GYYGGGEYTEEIINAALASDNPYDIVPS 74 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCCc------cccCceEEeHHHHHHHHhcCCccccCcC
Confidence 4799999999999999999999854 57789999998876542211 1111111111000000000112223346
Q ss_pred CCCCCChhhhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeCCC-----------CCHHHHHHHHHHHHhC--
Q 044578 214 RDQDGHGTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSGG-----------CFSSDILSAVDRAVAD-- 280 (769)
Q Consensus 214 ~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-----------~~~sdi~~ai~~a~~~-- 280 (769)
.|..||||||||||||+..++.. +.||||+|+|+++|++...+ +..++|+.||+|+++.
T Consensus 75 ~D~~GHGThvAGIiag~~~~~~~--------~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~ 146 (455)
T cd07478 75 RDENGHGTHVAGIAAGNGDNNPD--------FKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKAL 146 (455)
T ss_pred CCCCCchHHHHHHHhcCCCCCCC--------ccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHH
Confidence 78999999999999999765322 48999999999999998765 4688999999999874
Q ss_pred ---CCcEEEeccCCCCCC-CccchHHHHHHHHHhc-CcEEEEecCCCCCCCCcccCCCCceEEecCCCCCCceeeEEEeC
Q 044578 281 ---GVNVLSISLGGGVSS-YHRDSLSIATFGAMEM-GVFVSCSAGNGGPDPVSLTNVSPWITTVGASTLDRDFPATVKLG 355 (769)
Q Consensus 281 ---g~dVIn~SlG~~~~~-~~~~~~~~~~~~a~~~-Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~ 355 (769)
.+.|||||||..... ...+.++.++..+..+ |++||+||||+|....+...... .. ...-.-.+.++
T Consensus 147 ~~~~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~---~~-----~~~~~ie~~v~ 218 (455)
T cd07478 147 ELNKPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIV---PN-----GETKTVELNVG 218 (455)
T ss_pred HhCCCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeec---cC-----CceEEEEEEEC
Confidence 478999999986543 3456677777777765 99999999999976544332100 00 00011122222
Q ss_pred CCcEEEEEEeccCCcCCCCCccccEEEecCCCCCCCCcc--cCCCCCCCCccceEEEEeCCCC------chhhhhHHHhh
Q 044578 356 TGRTITGVSLYKGRRALLPNKQYPVVYMGSNSSNSSSLC--LEGTLNPTTVAGKIVICDRGIS------PRVQKGQVVKD 427 (769)
Q Consensus 356 ~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~c--~~~~~~~~~~~g~ivl~~~g~~------~~~~~~~~~~~ 427 (769)
.++.-....+|.... ....+.++.+..........- ....+.......++.+..+... ....+..++ .
T Consensus 219 ~~~~~~~~eiW~~~~---d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y~~~~~~~g~~~i~i~~~~~-~ 294 (455)
T cd07478 219 EGEKGFNLEIWGDFP---DRFSVSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVYYYLPEPYTGDQLIFIRFKNI-K 294 (455)
T ss_pred CCCcceEEEEecCCC---CEEEEEEECCCCCccCccCcCCCcceeEEEEECCeEEEEEEcCCCCCCCCeEEEEEccCC-C
Confidence 222111112222111 000011111100000000000 0000000000111111111000 000000110 1
Q ss_pred cCceEEEEecCCCCCccccccccccceEEEChhhhHHHHHHHhcCCCceEEEEecce------eecc-cCCCeeccccCC
Q 044578 428 AGGIGVILANTAANGEELVADCHLLPAVAVGEIEGKEIKQYASTSPKATASLALLGT------RVGI-KPSPVVAAFSSR 500 (769)
Q Consensus 428 ~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~a~fSS~ 500 (769)
.|-.-+.+....... -.-..|+|...+...+.. ++... +..+++.+.+ +... ...+.++.||||
T Consensus 295 ~GiW~i~~~~~~~~~---g~~~~Wlp~~~~~~~~t~----f~~~~--~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~ 365 (455)
T cd07478 295 PGIWKIRLTGVSITD---GRFDAWLPSRGLLSENTR----FLEPD--PYTTLTIPGTARSVITVGAYNQNNNSIAIFSGR 365 (455)
T ss_pred ccceEEEEEeccCCC---ceEEEEecCcCcCCCCCE----eecCC--CCceEecCCCCCCcEEEEEEeCCCCcccCccCC
Confidence 111111122111000 001234443333222211 11222 2233333222 1111 223469999999
Q ss_pred CCCCCCCCcccCeeeeCCCceeecccCCCCCCCCCCCccccceeeeccccchhhhhHHHHHHHHhhC------CCCCHHH
Q 044578 501 GPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARH------PEWSPAA 574 (769)
Q Consensus 501 GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~------p~lsp~~ 574 (769)
||+. ++++||||+|||++|+++.+.+ .|..++|||||||||||++|||+|++ |.|++++
T Consensus 366 G~~~--~~~~kpdi~APG~~i~s~~~~~-------------~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ 430 (455)
T cd07478 366 GPTR--DGRIKPDIAAPGVNILTASPGG-------------GYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEK 430 (455)
T ss_pred CcCC--CCCcCceEEecCCCEEEeecCC-------------cEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHH
Confidence 9998 5899999999999999998864 79999999999999999999999975 5679999
Q ss_pred HHHHHHhcccccCCCCCCCCCCCCCCCCCCCCCCCc
Q 044578 575 IKSALMTTAYVHDNTHNPLKDASSYEPSSPYDHGAG 610 (769)
Q Consensus 575 ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G 610 (769)
||++|++||+++. ...+++++||||
T Consensus 431 ik~~L~~tA~~~~-----------~~~~pn~~~GyG 455 (455)
T cd07478 431 IKTYLIRGARRRP-----------GDEYPNPEWGYG 455 (455)
T ss_pred HHHHHHHhCccCC-----------CCCCCCCCCCCC
Confidence 9999999999874 235677899998
No 7
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=1.2e-47 Score=419.74 Aligned_cols=312 Identities=29% Similarity=0.367 Sum_probs=233.0
Q ss_pred CccccCC-CCCCcEEEEeccccCCCCCCcccCCCCCCCC-----ccccccccCCCcccccCCceeEeeEecccchhhccC
Q 044578 129 SIWSQKV-ADYDVIVGVLDTGIWPESASFNDTGMTPVPA-----HWKGACETGRGFQKHHCNRKIVGARVFYRGYEAATG 202 (769)
Q Consensus 129 ~~~~~~~-~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~-----~w~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~ 202 (769)
++|+++. +|+||+|+|||||||++||+|.+....+... .+...+.. -...+++.+++..++|.++....
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-- 75 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGI---GYGKYYNEKVPFAYNYADNNDDI-- 75 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccC---CCCcccccCCCeeEcCCCCCCcc--
Confidence 3688887 9999999999999999999998764332111 11111111 11234677888888887663211
Q ss_pred cccccCCCCCCCCCCCChhhhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeC--CC-CCHHHHHHHHHHHHh
Q 044578 203 KINEQNEYKSPRDQDGHGTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWS--GG-CFSSDILSAVDRAVA 279 (769)
Q Consensus 203 ~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~--~g-~~~sdi~~ai~~a~~ 279 (769)
....|..+|||||||||+|...+..+ ...+.||||+|+|+.+|+++. .+ .....+++|++++++
T Consensus 76 --------~~~~~~~~HGT~vagiiag~~~~~~~-----~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~ 142 (346)
T cd07475 76 --------LDEDDGSSHGMHVAGIVAGNGDEEDN-----GEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVK 142 (346)
T ss_pred --------CCCCCCCCcHHHHHHHHhcCCCcccc-----CCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHH
Confidence 11457889999999999999764321 122599999999999999973 33 777889999999999
Q ss_pred CCCcEEEeccCCCCCC-CccchHHHHHHHHHhcCcEEEEecCCCCCCCCcc----------------cCCCCceEEecCC
Q 044578 280 DGVNVLSISLGGGVSS-YHRDSLSIATFGAMEMGVFVSCSAGNGGPDPVSL----------------TNVSPWITTVGAS 342 (769)
Q Consensus 280 ~g~dVIn~SlG~~~~~-~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~----------------~~~~p~vitVgA~ 342 (769)
.+++|||||||..... .....+..++.++.++|++||+||||+|...... +...+++|+||+.
T Consensus 143 ~g~~Vin~S~G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~ 222 (346)
T cd07475 143 LGADVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASA 222 (346)
T ss_pred cCCCEEEECCCcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeec
Confidence 9999999999986533 4445677777888999999999999998654321 1223445555442
Q ss_pred CCCCceeeEEEeCCCcEEEEEEeccCCcCCCCCccccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhh
Q 044578 343 TLDRDFPATVKLGTGRTITGVSLYKGRRALLPNKQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKG 422 (769)
Q Consensus 343 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~ 422 (769)
..
T Consensus 223 ~~------------------------------------------------------------------------------ 224 (346)
T cd07475 223 NK------------------------------------------------------------------------------ 224 (346)
T ss_pred cc------------------------------------------------------------------------------
Confidence 10
Q ss_pred HHHhhcCceEEEEecCCCCCccccccccccceEEEChhhhHHHHHHHhcCCCceEEEEecceeecccCCCeeccccCCCC
Q 044578 423 QVVKDAGGIGVILANTAANGEELVADCHLLPAVAVGEIEGKEIKQYASTSPKATASLALLGTRVGIKPSPVVAAFSSRGP 502 (769)
Q Consensus 423 ~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~GP 502 (769)
.......+.++.||+|||
T Consensus 225 --------------------------------------------------------------~~~~~~~~~~~~~S~~G~ 242 (346)
T cd07475 225 --------------------------------------------------------------KVPNPNGGQMSGFSSWGP 242 (346)
T ss_pred --------------------------------------------------------------ccCCCCCCccCCCcCCCC
Confidence 000123347889999999
Q ss_pred CCCCCCcccCeeeeCCCceeecccCCCCCCCCCCCccccceeeeccccchhhhhHHHHHHHHhh----CCCCCHHH----
Q 044578 503 NFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKAR----HPEWSPAA---- 574 (769)
Q Consensus 503 ~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~p~lsp~~---- 574 (769)
+. .+++||||+|||.+|+++.... .|..++|||||||+|||++|||+|+ +|.|++.+
T Consensus 243 ~~--~~~~~pdi~apG~~i~s~~~~~-------------~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ 307 (346)
T cd07475 243 TP--DLDLKPDITAPGGNIYSTVNDN-------------TYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDL 307 (346)
T ss_pred Cc--ccCcCCeEEeCCCCeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHH
Confidence 98 4799999999999999987764 7899999999999999999999998 79999877
Q ss_pred HHHHHHhcccccCCCCCCCCCCCCCCCCCCCCCCCcccCccccCC
Q 044578 575 IKSALMTTAYVHDNTHNPLKDASSYEPSSPYDHGAGHINPVKALD 619 (769)
Q Consensus 575 ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vd~~~Al~ 619 (769)
||++|++||.+.... .....++.+.++|+|+||+.+|++
T Consensus 308 ik~~l~~ta~~~~~~------~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 308 VKNLLMNTATPPLDS------EDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred HHHHHHhcCCccccc------CCCCccCCccccCcchhcHHHhhC
Confidence 788999999853211 112556778899999999999985
No 8
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.3e-47 Score=406.59 Aligned_cols=295 Identities=31% Similarity=0.405 Sum_probs=229.4
Q ss_pred CCccccCCCCCCcEEEEeccccCCCCCCcccCCCCCCCCccccccccCCCcccccCCceeEeeEecccchhhccCccccc
Q 044578 128 TSIWSQKVADYDVIVGVLDTGIWPESASFNDTGMTPVPAHWKGACETGRGFQKHHCNRKIVGARVFYRGYEAATGKINEQ 207 (769)
Q Consensus 128 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~ 207 (769)
+++|+.+++|+||+|||||+|||++||+|.+.-.+ +.++.+.+++..+... ..+..
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~---------------------~~~~~~~~d~~~~~~~---~~~~~ 58 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGP---------------------GCKVAGGYDFVGDDYD---GTNPP 58 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCC---------------------CceeccccccCCcccc---cccCC
Confidence 57899999999999999999999999999764111 1122333333322100 01112
Q ss_pred CCCCCCCCCCCChhhhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeCCC-CCHHHHHHHHHHHHhCCCcEEE
Q 044578 208 NEYKSPRDQDGHGTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSGG-CFSSDILSAVDRAVADGVNVLS 286 (769)
Q Consensus 208 ~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~sdi~~ai~~a~~~g~dVIn 286 (769)
.+...+.|..+|||||||||+|...+ .+ +.||||+|+|+.+|++++.+ .....++++++++++++++|||
T Consensus 59 ~~~~~~~d~~gHGT~vAgiia~~~~~----~~-----~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn 129 (312)
T cd07489 59 VPDDDPMDCQGHGTHVAGIIAANPNA----YG-----FTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVIT 129 (312)
T ss_pred CCCCCCCCCCCcHHHHHHHHhcCCCC----Cc-----eEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 23345677899999999999998754 12 48999999999999998766 6677789999999999999999
Q ss_pred eccCCCCCCCccchHHHHHHHHHhcCcEEEEecCCCCCCCC---cccCCCCceEEecCCCCCCceeeEEEeCCCcEEEEE
Q 044578 287 ISLGGGVSSYHRDSLSIATFGAMEMGVFVSCSAGNGGPDPV---SLTNVSPWITTVGASTLDRDFPATVKLGTGRTITGV 363 (769)
Q Consensus 287 ~SlG~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~ 363 (769)
||||.... +..+.+...+.++.++|+++|+||||+|.... ..+...|++|+||+.+
T Consensus 130 ~S~g~~~~-~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~-------------------- 188 (312)
T cd07489 130 ASLGGPSG-WSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD-------------------- 188 (312)
T ss_pred eCCCcCCC-CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec--------------------
Confidence 99997543 33466777777888999999999999986543 3355667888888611
Q ss_pred EeccCCcCCCCCccccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCCCCc
Q 044578 364 SLYKGRRALLPNKQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAANGE 443 (769)
Q Consensus 364 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~ 443 (769)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccceEEEChhhhHHHHHHHhcCCCceEEEEecceeecccCCCeeccccCCCCCCCCCCcccCeeeeCCCceee
Q 044578 444 ELVADCHLLPAVAVGEIEGKEIKQYASTSPKATASLALLGTRVGIKPSPVVAAFSSRGPNFLTLEILKPDIVAPGVNILA 523 (769)
Q Consensus 444 ~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~s 523 (769)
+.||+|||+.. ...||||+|||+++++
T Consensus 189 ---------------------------------------------------~~~s~~g~~~~--~~~kpdv~ApG~~i~~ 215 (312)
T cd07489 189 ---------------------------------------------------SYFSSWGPTNE--LYLKPDVAAPGGNILS 215 (312)
T ss_pred ---------------------------------------------------CCccCCCCCCC--CCcCccEEcCCCCEEE
Confidence 46899999984 7899999999999999
Q ss_pred cccCCCCCCCCCCCccccceeeeccccchhhhhHHHHHHHHhhC-CCCCHHHHHHHHHhcccccCCCCCCCCCCCCCCCC
Q 044578 524 AWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARH-PEWSPAAIKSALMTTAYVHDNTHNPLKDASSYEPS 602 (769)
Q Consensus 524 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-p~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~ 602 (769)
+++.... .|..++|||||||+|||++||++|++ |.+++.+||++|++||.++......... ..++
T Consensus 216 ~~~~~~~-----------~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~~---~~~~ 281 (312)
T cd07489 216 TYPLAGG-----------GYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSAL---PDLA 281 (312)
T ss_pred eeeCCCC-----------ceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCccc---cCCC
Confidence 8877522 58999999999999999999999999 9999999999999999987644321111 1246
Q ss_pred CCCCCCCcccCccccCCCCce
Q 044578 603 SPYDHGAGHINPVKALDPGLI 623 (769)
Q Consensus 603 ~~~~~G~G~vd~~~Al~~~lv 623 (769)
+..++|+|+||+.+|++..-.
T Consensus 282 ~~~~~G~G~vn~~~a~~~~~~ 302 (312)
T cd07489 282 PVAQQGAGLVNAYKALYATTT 302 (312)
T ss_pred CHhhcCcceeeHHHHhcCCcc
Confidence 667999999999999996443
No 9
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=3.7e-46 Score=390.03 Aligned_cols=246 Identities=26% Similarity=0.344 Sum_probs=202.1
Q ss_pred ccccCCCCCCcEEEEeccccCCCCCCcccCCCCCCCCccccccccCCCcccccCCceeEeeEecccchhhccCcccccCC
Q 044578 130 IWSQKVADYDVIVGVLDTGIWPESASFNDTGMTPVPAHWKGACETGRGFQKHHCNRKIVGARVFYRGYEAATGKINEQNE 209 (769)
Q Consensus 130 ~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~ 209 (769)
+|+.+++|+||+|||||+|||++||+|.+....+.. .+.. .
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~~--------------------------~~~~-------------~ 42 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPLF--------------------------TYAA-------------A 42 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCcccccc--------------------------Cccc-------------c
Confidence 799999999999999999999999999764211100 0000 0
Q ss_pred CCCCCCCCCChhhhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeCCC--CCHHHHHHHHHHHHhCCCcEEEe
Q 044578 210 YKSPRDQDGHGTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSGG--CFSSDILSAVDRAVADGVNVLSI 287 (769)
Q Consensus 210 ~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~sdi~~ai~~a~~~g~dVIn~ 287 (769)
.....|..+|||||||||+|+..+ .+.||||+|+|+.+|++...+ ++..++++||+||+++|++||||
T Consensus 43 ~~~~~~~~gHGT~VAgii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~ 112 (267)
T cd07476 43 ACQDGGASAHGTHVASLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINI 112 (267)
T ss_pred CCCCCCCCCcHHHHHHHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEe
Confidence 113456789999999999987532 248999999999999997654 44778999999999999999999
Q ss_pred ccCCCCC-CCccchHHHHHHHHHhcCcEEEEecCCCCCCCCcccCCCCceEEecCCCCCCceeeEEEeCCCcEEEEEEec
Q 044578 288 SLGGGVS-SYHRDSLSIATFGAMEMGVFVSCSAGNGGPDPVSLTNVSPWITTVGASTLDRDFPATVKLGTGRTITGVSLY 366 (769)
Q Consensus 288 SlG~~~~-~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~~~ 366 (769)
|||.... ......+..++.++.++|+++|+||||+|.....++...|++|+|||...
T Consensus 113 S~G~~~~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~---------------------- 170 (267)
T cd07476 113 SGGRLTQTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDD---------------------- 170 (267)
T ss_pred cCCcCCCCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecC----------------------
Confidence 9997542 23445677888889999999999999999887778888999999997321
Q ss_pred cCCcCCCCCccccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCCCCcccc
Q 044578 367 KGRRALLPNKQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAANGEELV 446 (769)
Q Consensus 367 ~~~~~~~~~~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~ 446 (769)
T Consensus 171 -------------------------------------------------------------------------------- 170 (267)
T cd07476 171 -------------------------------------------------------------------------------- 170 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccceEEEChhhhHHHHHHHhcCCCceEEEEecceeecccCCCeeccccCCCCCCCCCCcccCeeeeCCCceeeccc
Q 044578 447 ADCHLLPAVAVGEIEGKEIKQYASTSPKATASLALLGTRVGIKPSPVVAAFSSRGPNFLTLEILKPDIVAPGVNILAAWS 526 (769)
Q Consensus 447 ~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~ 526 (769)
.+.++.||++|+.. .||||+|||.+|+++.+
T Consensus 171 --------------------------------------------~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~ 201 (267)
T cd07476 171 --------------------------------------------DGLPLKFSNWGADY-----RKKGILAPGENILGAAL 201 (267)
T ss_pred --------------------------------------------CCCeeeecCCCCCC-----CCceEEecCCCceeecC
Confidence 12456799999764 38899999999999887
Q ss_pred CCCCCCCCCCCccccceeeeccccchhhhhHHHHHHHHhhCCC----CCHHHHHHHHHhcccccCC
Q 044578 527 GETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPE----WSPAAIKSALMTTAYVHDN 588 (769)
Q Consensus 527 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~----lsp~~ik~~L~~TA~~~~~ 588 (769)
.+ .|..++|||||||||||++|||+|++|. ++|++||++|++||+++..
T Consensus 202 ~~-------------~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 202 GG-------------EVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred CC-------------CeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 64 7999999999999999999999999887 8999999999999999864
No 10
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.2e-45 Score=389.52 Aligned_cols=289 Identities=38% Similarity=0.548 Sum_probs=216.6
Q ss_pred CCCcEEEEeccccCCCCCCcccCCCCCCCCccccccccCCCcccccCCceeEeeEecccchhhccC-c-ccccCCCCCCC
Q 044578 137 DYDVIVGVLDTGIWPESASFNDTGMTPVPAHWKGACETGRGFQKHHCNRKIVGARVFYRGYEAATG-K-INEQNEYKSPR 214 (769)
Q Consensus 137 G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~-~-~~~~~~~~~~~ 214 (769)
|+||+|||||+|||++||+|.+.. ..+.++...++|......... . ...........
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG---------------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAG 59 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC---------------------CCCCceeeeeECccCCCCcccccccccccccCCCC
Confidence 899999999999999999997531 123344445555432111000 0 00000112245
Q ss_pred CCCCChhhhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeCCC-CCHHHHHHHHHHHHhCCCcEEEeccCCCC
Q 044578 215 DQDGHGTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSGG-CFSSDILSAVDRAVADGVNVLSISLGGGV 293 (769)
Q Consensus 215 D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~sdi~~ai~~a~~~g~dVIn~SlG~~~ 293 (769)
|..+|||||||+|+|...+.. .+.|+||+|+|+.+|+++..+ +...++++||+|+++++++|||||||...
T Consensus 60 ~~~~HGT~vAgiiag~~~n~~--------~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~ 131 (295)
T cd07474 60 DATGHGTHVAGIIAGNGVNVG--------TIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSV 131 (295)
T ss_pred CCCCcHHHHHHHHhcCCCccC--------ceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC
Confidence 689999999999999865532 248999999999999998554 78889999999999999999999999754
Q ss_pred CCCccchHHHHHHHHHhcCcEEEEecCCCCCCCCcc--cCCCCceEEecCCCCCCceeeEEEeCCCcEEEEEEeccCCcC
Q 044578 294 SSYHRDSLSIATFGAMEMGVFVSCSAGNGGPDPVSL--TNVSPWITTVGASTLDRDFPATVKLGTGRTITGVSLYKGRRA 371 (769)
Q Consensus 294 ~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 371 (769)
.. ..+.+..++.++.++|+++|+||||+|...... +...+++|+|||......
T Consensus 132 ~~-~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~------------------------ 186 (295)
T cd07474 132 NG-PDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV------------------------ 186 (295)
T ss_pred CC-CCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc------------------------
Confidence 32 345677778889999999999999998765543 567889999998431000
Q ss_pred CCCCccccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCCCCccccccccc
Q 044578 372 LLPNKQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAANGEELVADCHL 451 (769)
Q Consensus 372 ~~~~~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~ 451 (769)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEChhhhHHHHHHHhcCCCceEEEEecceeecccCCCeeccccCC-CCCCCCCCcccCeeeeCCCceeecccCCCC
Q 044578 452 LPAVAVGEIEGKEIKQYASTSPKATASLALLGTRVGIKPSPVVAAFSSR-GPNFLTLEILKPDIVAPGVNILAAWSGETG 530 (769)
Q Consensus 452 ~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~-GP~~~~~~~lKPDI~APG~~I~sa~~~~~~ 530 (769)
........|+++ |+.. ...+||||+|||++|.+++....
T Consensus 187 -------------------------------------~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~~~~~~- 226 (295)
T cd07474 187 -------------------------------------AEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMSTAPGSG- 226 (295)
T ss_pred -------------------------------------CCCCceeccCCCCCCCC--CCCcCCCEECCcCceEeeccCCC-
Confidence 001133445555 4554 57999999999999999987631
Q ss_pred CCCCCCCccccceeeeccccchhhhhHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCCCCCCc
Q 044578 531 PSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSPAAIKSALMTTAYVHDNTHNPLKDASSYEPSSPYDHGAG 610 (769)
Q Consensus 531 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G 610 (769)
..|..++|||||||+|||++|||+|++|+|++++||++|++||++....+. ..+++..+|+|
T Consensus 227 ----------~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~--------~~~~~~~~G~G 288 (295)
T cd07474 227 ----------TGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG--------VVYPVSRQGAG 288 (295)
T ss_pred ----------CceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC--------CcCChhccCcc
Confidence 278999999999999999999999999999999999999999998764432 22345699999
Q ss_pred ccCcccc
Q 044578 611 HINPVKA 617 (769)
Q Consensus 611 ~vd~~~A 617 (769)
+||+.+|
T Consensus 289 ~l~~~~A 295 (295)
T cd07474 289 RVDALRA 295 (295)
T ss_pred eeccccC
Confidence 9999987
No 11
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=1.8e-45 Score=391.00 Aligned_cols=269 Identities=27% Similarity=0.391 Sum_probs=190.1
Q ss_pred CCcEEEEeccccCCCCCCcccCCCC-CCCCccccccccCCCcccccCCceeEeeEecccchhhc----cCccc------c
Q 044578 138 YDVIVGVLDTGIWPESASFNDTGMT-PVPAHWKGACETGRGFQKHHCNRKIVGARVFYRGYEAA----TGKIN------E 206 (769)
Q Consensus 138 ~Gv~VgVIDtGid~~Hp~f~~~~~~-~~~~~w~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~----~~~~~------~ 206 (769)
|+|+|||||||||++||+|++.... +.....+|....+.+|..+ +++++|...+... +.+.+ .
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~dd------~~g~~f~~~~~~~~~~~~~~~~~~~~~~g 74 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYIDD------VNGWNFLGQYDPRRIVGDDPYDLTEKGYG 74 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCcccc------ccCeeccCCcccccccccCcccccccccc
Confidence 6899999999999999999875110 0000112222223333221 2344443211100 00000 0
Q ss_pred cCCCCCCCCCCCChhhhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeCCCCCHHHHHHHHHHHHhCCCcEEE
Q 044578 207 QNEYKSPRDQDGHGTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSGGCFSSDILSAVDRAVADGVNVLS 286 (769)
Q Consensus 207 ~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~sdi~~ai~~a~~~g~dVIn 286 (769)
......+.+..+|||||||||+|...++.+ +.||||+|+|+.+|++........++++||+||+++|++|||
T Consensus 75 ~~~~~~~~~~~gHGT~VAGiIaa~~~n~~g--------~~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~IiN 146 (291)
T cd07483 75 NNDVNGPISDADHGTHVAGIIAAVRDNGIG--------IDGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVIN 146 (291)
T ss_pred ccccCCCCCCCCcHHHHHHHHhCcCCCCCc--------eEEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEEE
Confidence 112233557899999999999998654322 389999999999999865556788999999999999999999
Q ss_pred eccCCCCCCCccchHHHHHHHHHhcCcEEEEecCCCCCCCCc---cc--------CCCCceEEecCCCCCCceeeEEEeC
Q 044578 287 ISLGGGVSSYHRDSLSIATFGAMEMGVFVSCSAGNGGPDPVS---LT--------NVSPWITTVGASTLDRDFPATVKLG 355 (769)
Q Consensus 287 ~SlG~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~---~~--------~~~p~vitVgA~~~~~~~~~~~~~~ 355 (769)
||||..... ....+..++.++.++|+++|+||||+|..... ++ ...+++|+|||....
T Consensus 147 ~S~G~~~~~-~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~---------- 215 (291)
T cd07483 147 MSFGKSFSP-NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKK---------- 215 (291)
T ss_pred eCCCCCCCC-ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeecccc----------
Confidence 999975432 23456667778889999999999999864321 11 123455555542210
Q ss_pred CCcEEEEEEeccCCcCCCCCccccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEE
Q 044578 356 TGRTITGVSLYKGRRALLPNKQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVIL 435 (769)
Q Consensus 356 ~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~ 435 (769)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCCccccccccccceEEEChhhhHHHHHHHhcCCCceEEEEecceeecccCCCeeccccCCCCCCCCCCcccCeee
Q 044578 436 ANTAANGEELVADCHLLPAVAVGEIEGKEIKQYASTSPKATASLALLGTRVGIKPSPVVAAFSSRGPNFLTLEILKPDIV 515 (769)
Q Consensus 436 ~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~ 515 (769)
.....++.||++|+. +|||+
T Consensus 216 -----------------------------------------------------~~~~~~~~~Sn~G~~-------~vdi~ 235 (291)
T cd07483 216 -----------------------------------------------------YENNLVANFSNYGKK-------NVDVF 235 (291)
T ss_pred -----------------------------------------------------CCcccccccCCCCCC-------ceEEE
Confidence 011257889999974 45999
Q ss_pred eCCCceeecccCCCCCCCCCCCccccceeeeccccchhhhhHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044578 516 APGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSPAAIKSALMTTAY 584 (769)
Q Consensus 516 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 584 (769)
|||++|+++.+.. .|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 236 APG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 236 APGERIYSTTPDN-------------EYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred eCCCCeEeccCcC-------------CeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 9999999997764 7999999999999999999999999999999999999999984
No 12
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-46 Score=387.77 Aligned_cols=331 Identities=31% Similarity=0.433 Sum_probs=263.1
Q ss_pred CCCCeEEEEeCCCCCCCcccchHHHHHHHhhcccccCCCc----------------cEEEEec---ceeeEEEEEcCHHH
Q 044578 30 STKKTYIVQMDKSAMPESFSDHAEWFSSTVKSVAYKNDED----------------RIIYSYQ---TAFHGVAARLSEEE 90 (769)
Q Consensus 30 ~~~~~yIV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------------~v~~~y~---~~~~g~~~~~~~~~ 90 (769)
..+.+|||.|++.........|.+|++...+......... .+.+.|. .+++|+.-.++.+-
T Consensus 78 ~~~~~YiV~f~~~~~q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft~~~ 157 (501)
T KOG1153|consen 78 ALPSRYIVVFKPDASQQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFTGES 157 (501)
T ss_pred ccccceEEEeCCCccHHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhccccccccce
Confidence 3568999999977776677788888876654322200000 1333332 37788888999999
Q ss_pred HHHHhcCCCeeEEEeCeeecccc-----CCCCcccCcCCCCCCC-----cc----ccCCCCCCcEEEEeccccCCCCCCc
Q 044578 91 AERLEQEDGVMAIFPETKYELHT-----TRSPLFLGLEPADSTS-----IW----SQKVADYDVIVGVLDTGIWPESASF 156 (769)
Q Consensus 91 l~~L~~~p~V~~v~~~~~~~~~~-----~~s~~~~g~~~~~~~~-----~~----~~~~~G~Gv~VgVIDtGid~~Hp~f 156 (769)
+..++++|-++.++++..+.... .+....||+.++.... .| .....|+||...|+||||+..||||
T Consensus 158 v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H~dF 237 (501)
T KOG1153|consen 158 VCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEHPDF 237 (501)
T ss_pred eeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEeccccccccccc
Confidence 99999999999999998877654 4566678888775422 11 1233799999999999999999999
Q ss_pred ccCCCCCCCCccccccccCCCcccccCCceeEeeEecccchhhccCcccccCCCCCCCCCCCChhhhhHhhccCCCCCCC
Q 044578 157 NDTGMTPVPAHWKGACETGRGFQKHHCNRKIVGARVFYRGYEAATGKINEQNEYKSPRDQDGHGTHTAATVAGSPVHGAN 236 (769)
Q Consensus 157 ~~~~~~~~~~~w~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~ 236 (769)
.++ +.| |..++. .....|++||||||||+|+++.
T Consensus 238 egR------a~w------Ga~i~~-----------------------------~~~~~D~nGHGTH~AG~I~sKt----- 271 (501)
T KOG1153|consen 238 EGR------AIW------GATIPP-----------------------------KDGDEDCNGHGTHVAGLIGSKT----- 271 (501)
T ss_pred ccc------eec------ccccCC-----------------------------CCcccccCCCcceeeeeeeccc-----
Confidence 876 445 222110 1125689999999999999985
Q ss_pred ccccccccceeeccCceEEEEEEeeCCC-CCHHHHHHHHHHHHhC---------CCcEEEeccCCCCCCCccchHHHHHH
Q 044578 237 LLGYAYGTARGMSTGARIAVYKVCWSGG-CFSSDILSAVDRAVAD---------GVNVLSISLGGGVSSYHRDSLSIATF 306 (769)
Q Consensus 237 ~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~sdi~~ai~~a~~~---------g~dVIn~SlG~~~~~~~~~~~~~~~~ 306 (769)
.|||.+++|+++||++++| +..+++++++|++++. +..|.|||+|+..+. ++..|+.
T Consensus 272 ---------~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~S~----aLn~AV~ 338 (501)
T KOG1153|consen 272 ---------FGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFRSA----ALNMAVN 338 (501)
T ss_pred ---------cccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCcccH----HHHHHHH
Confidence 8999999999999999999 9999999999999986 478999999997654 5566666
Q ss_pred HHHhcCcEEEEecCCCCCCCC-cccCCCCceEEecCCCCCCceeeEEEeCCCcEEEEEEeccCCcCCCCCccccEEEecC
Q 044578 307 GAMEMGVFVSCSAGNGGPDPV-SLTNVSPWITTVGASTLDRDFPATVKLGTGRTITGVSLYKGRRALLPNKQYPVVYMGS 385 (769)
Q Consensus 307 ~a~~~Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 385 (769)
+|.+.|+++++||||+..+.+ +.|+.+..+|||||++.
T Consensus 339 ~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~----------------------------------------- 377 (501)
T KOG1153|consen 339 AASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTK----------------------------------------- 377 (501)
T ss_pred HHhhcCeEEEEcCCCcchhhhccCcccccccEEeccccc-----------------------------------------
Confidence 999999999999999998876 56678899999999642
Q ss_pred CCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCCCCccccccccccceEEEChhhhHHH
Q 044578 386 NSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAANGEELVADCHLLPAVAVGEIEGKEI 465 (769)
Q Consensus 386 ~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l 465 (769)
T Consensus 378 -------------------------------------------------------------------------------- 377 (501)
T KOG1153|consen 378 -------------------------------------------------------------------------------- 377 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCCceEEEEecceeecccCCCeeccccCCCCCCCCCCcccCeeeeCCCceeecccCCCCCCCCCCCccccceee
Q 044578 466 KQYASTSPKATASLALLGTRVGIKPSPVVAAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNI 545 (769)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~ 545 (769)
.+.+|.||+||+|. ||.|||.+|+|+|.+... ...+
T Consensus 378 -------------------------~D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~~-----------at~i 413 (501)
T KOG1153|consen 378 -------------------------NDTIAFFSNWGKCV--------DIFAPGVNILSSWIGSNN-----------ATAI 413 (501)
T ss_pred -------------------------ccchhhhcCcccee--------eeecCchhhhhhhhcCcc-----------chhe
Confidence 12789999999999 999999999999998643 6679
Q ss_pred eccccchhhhhHHHHHHHHhhCCC---------CCHHHHHHHHHhccc
Q 044578 546 LSGTSMSCPHVSGIAALLKARHPE---------WSPAAIKSALMTTAY 584 (769)
Q Consensus 546 ~sGTSmAaP~VAG~aALl~q~~p~---------lsp~~ik~~L~~TA~ 584 (769)
.||||||+|||||++|.++.++|. .||.++|..++.-..
T Consensus 414 lSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 414 LSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred eecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 999999999999999999999883 388888888877554
No 13
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.8e-45 Score=379.74 Aligned_cols=234 Identities=28% Similarity=0.385 Sum_probs=190.1
Q ss_pred cEEEEeccccCCCCCCcccCCCCCCCCccccccccCCCcccccCCceeEeeEecccchhhccCcccccCCCCCCCCCCCC
Q 044578 140 VIVGVLDTGIWPESASFNDTGMTPVPAHWKGACETGRGFQKHHCNRKIVGARVFYRGYEAATGKINEQNEYKSPRDQDGH 219 (769)
Q Consensus 140 v~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~D~~gH 219 (769)
|+|||||||||++||+|+++. +..+++.. ....|..+|
T Consensus 1 V~VavIDsGvd~~hp~l~~~~---------------------------~~~~~~~~---------------~~~~~~~~H 38 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVV---------------------------IARLFFAG---------------PGAPAPSAH 38 (239)
T ss_pred CEEEEEeCCCCCCCcccccCc---------------------------cccccCCC---------------CCCCCCCCC
Confidence 789999999999999996531 10011100 025567899
Q ss_pred hhhhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeCCC----CCHHHHHHHHHHHHhCCCcEEEeccCCCCCC
Q 044578 220 GTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSGG----CFSSDILSAVDRAVADGVNVLSISLGGGVSS 295 (769)
Q Consensus 220 GThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g----~~~sdi~~ai~~a~~~g~dVIn~SlG~~~~~ 295 (769)
||||||||+|+..+. .|+||+|+|+.+|++...+ ++..++++||+||++.+++|||||||+..
T Consensus 39 GT~vAgiia~~~~~~-----------~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~-- 105 (239)
T cd05561 39 GTAVASLLAGAGAQR-----------PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP-- 105 (239)
T ss_pred HHHHHHHHhCCCCCC-----------cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC--
Confidence 999999999985321 6999999999999998642 67788999999999999999999999743
Q ss_pred CccchHHHHHHHHHhcCcEEEEecCCCCCCC-CcccCCCCceEEecCCCCCCceeeEEEeCCCcEEEEEEeccCCcCCCC
Q 044578 296 YHRDSLSIATFGAMEMGVFVSCSAGNGGPDP-VSLTNVSPWITTVGASTLDRDFPATVKLGTGRTITGVSLYKGRRALLP 374 (769)
Q Consensus 296 ~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 374 (769)
...+..++.++.++|+++|+||||+|... ..+++..+++|+|++.+
T Consensus 106 --~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~------------------------------- 152 (239)
T cd05561 106 --NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVD------------------------------- 152 (239)
T ss_pred --CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeec-------------------------------
Confidence 24566777789999999999999999763 35677788899998732
Q ss_pred CccccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCCCCccccccccccce
Q 044578 375 NKQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAANGEELVADCHLLPA 454 (769)
Q Consensus 375 ~~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~ 454 (769)
T Consensus 153 -------------------------------------------------------------------------------- 152 (239)
T cd05561 153 -------------------------------------------------------------------------------- 152 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEChhhhHHHHHHHhcCCCceEEEEecceeecccCCCeeccccCCCCCCCCCCcccCeeeeCCCceeecccCCCCCCCC
Q 044578 455 VAVGEIEGKEIKQYASTSPKATASLALLGTRVGIKPSPVVAAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSL 534 (769)
Q Consensus 455 ~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~ 534 (769)
..+.++.||++|+.. ||+|||++|+++.+..
T Consensus 153 -----------------------------------~~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~~------ 183 (239)
T cd05561 153 -----------------------------------ARGRLYREANRGAHV--------DFAAPGVDVWVAAPGG------ 183 (239)
T ss_pred -----------------------------------CCCCccccCCCCCcc--------eEEccccceecccCCC------
Confidence 112567899999876 9999999999976654
Q ss_pred CCCccccceeeeccccchhhhhHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCCCCCCc
Q 044578 535 PADHRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSPAAIKSALMTTAYVHDNTHNPLKDASSYEPSSPYDHGAG 610 (769)
Q Consensus 535 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G 610 (769)
.|..++|||||||||||++|||+|++| ++++|||++|++||+++.. +..+..||||
T Consensus 184 -------~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~------------~~~d~~~G~G 239 (239)
T cd05561 184 -------GYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGP------------PGRDPVFGYG 239 (239)
T ss_pred -------CEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCC------------CCcCCCcCCC
Confidence 799999999999999999999999999 9999999999999998743 3334588987
No 14
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=2.2e-44 Score=378.46 Aligned_cols=247 Identities=32% Similarity=0.437 Sum_probs=194.5
Q ss_pred CCCcEEEEeccccCCCCCCcccCCCCCCCCccccccccCCCcccccCCceeEeeEecccchhhccCcccccCCCCCCCCC
Q 044578 137 DYDVIVGVLDTGIWPESASFNDTGMTPVPAHWKGACETGRGFQKHHCNRKIVGARVFYRGYEAATGKINEQNEYKSPRDQ 216 (769)
Q Consensus 137 G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~D~ 216 (769)
|+||+|||||+|||++||+|.+. |++.... .+. ..+.+.+ .......+.|.
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~~--~~~---------~~~~~~d----------~~~~~~~~~d~ 51 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGGG--SAD---------HDYNWFD----------PVGNTPLPYDD 51 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCCC--Ccc---------ccccccc----------CCCCCCCCCCC
Confidence 89999999999999999999764 1111000 000 0000100 01112346788
Q ss_pred CCChhhhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeCCCCCHHHHHHHHHHHHh------------CCCcE
Q 044578 217 DGHGTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSGGCFSSDILSAVDRAVA------------DGVNV 284 (769)
Q Consensus 217 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~sdi~~ai~~a~~------------~g~dV 284 (769)
.+|||||||||+|..... ...||||+|+|+.+|+++..++...+++++++|+++ .+++|
T Consensus 52 ~~HGT~vagii~g~~~~~---------~~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~I 122 (264)
T cd07481 52 NGHGTHTMGTMVGNDGDG---------QQIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDV 122 (264)
T ss_pred CCchhhhhhheeecCCCC---------CceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCeE
Confidence 999999999999875332 127999999999999998877888899999999975 68999
Q ss_pred EEeccCCCCCCCccchHHHHHHHHHhcCcEEEEecCCCCCCCCc---ccCCCCceEEecCCCCCCceeeEEEeCCCcEEE
Q 044578 285 LSISLGGGVSSYHRDSLSIATFGAMEMGVFVSCSAGNGGPDPVS---LTNVSPWITTVGASTLDRDFPATVKLGTGRTIT 361 (769)
Q Consensus 285 In~SlG~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~---~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~ 361 (769)
||||||.... ....+..++..+.++|++||+||||+|..... .+...|++|+|||.+
T Consensus 123 in~S~G~~~~--~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~------------------ 182 (264)
T cd07481 123 INNSWGGPSG--DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATD------------------ 182 (264)
T ss_pred EEeCCCcCCC--CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecC------------------
Confidence 9999998643 23455556667888999999999999866442 566778899998732
Q ss_pred EEEeccCCcCCCCCccccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCCC
Q 044578 362 GVSLYKGRRALLPNKQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAAN 441 (769)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 441 (769)
T Consensus 183 -------------------------------------------------------------------------------- 182 (264)
T cd07481 183 -------------------------------------------------------------------------------- 182 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccccceEEEChhhhHHHHHHHhcCCCceEEEEecceeecccCCCeeccccCCCCCCCCCCcccCeeeeCCCce
Q 044578 442 GEELVADCHLLPAVAVGEIEGKEIKQYASTSPKATASLALLGTRVGIKPSPVVAAFSSRGPNFLTLEILKPDIVAPGVNI 521 (769)
Q Consensus 442 ~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I 521 (769)
..+.++.||++||... +++||||+|||.+|
T Consensus 183 ------------------------------------------------~~~~~~~~S~~g~~~~--~~~~~dv~ApG~~i 212 (264)
T cd07481 183 ------------------------------------------------RNDVLADFSSRGPSTY--GRIKPDISAPGVNI 212 (264)
T ss_pred ------------------------------------------------CCCCCccccCCCCCCC--CCcCceEEECCCCe
Confidence 1226788999999984 79999999999999
Q ss_pred eecccCCCCCCCCCCCccccceeeeccccchhhhhHHHHHHHHhhCCC--CCHHHHHHHHHhccc
Q 044578 522 LAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPE--WSPAAIKSALMTTAY 584 (769)
Q Consensus 522 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~--lsp~~ik~~L~~TA~ 584 (769)
.++.+.+ .|..++|||||||+|||++|||+|++|+ +++.|||++|++||+
T Consensus 213 ~s~~~~~-------------~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 213 RSAVPGG-------------GYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred EEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 9998774 7899999999999999999999999999 999999999999985
No 15
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=7.9e-44 Score=385.38 Aligned_cols=220 Identities=25% Similarity=0.283 Sum_probs=165.5
Q ss_pred CCCCCChhhhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeCCC---CCHHHHHHHHHHHHhCCCcEEEeccC
Q 044578 214 RDQDGHGTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSGG---CFSSDILSAVDRAVADGVNVLSISLG 290 (769)
Q Consensus 214 ~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~sdi~~ai~~a~~~g~dVIn~SlG 290 (769)
.|+.+|||||||||||+..++. .+.||||+|+|+++|+++... +...++++||++|++.+++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~~--------~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEEP--------ERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCCC--------ceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 4788999999999999864332 248999999999999987542 23457999999999999999999999
Q ss_pred CCCCCCccchHHHHHHH-HHhcCcEEEEecCCCCCCCCccc--C-CCCceEEecCCCCCCceeeEEEeCCCcEEEEEEec
Q 044578 291 GGVSSYHRDSLSIATFG-AMEMGVFVSCSAGNGGPDPVSLT--N-VSPWITTVGASTLDRDFPATVKLGTGRTITGVSLY 366 (769)
Q Consensus 291 ~~~~~~~~~~~~~~~~~-a~~~Gi~vV~AAGN~G~~~~~~~--~-~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~~~ 366 (769)
..........+..++.+ +.++|+++|+||||+|+...++. . ..+++|+|||..........
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~--------------- 318 (412)
T cd04857 254 EATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE--------------- 318 (412)
T ss_pred cCCCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc---------------
Confidence 86532222233334433 34689999999999998766543 2 46899999984321110000
Q ss_pred cCCcCCCCCccccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCCCCcccc
Q 044578 367 KGRRALLPNKQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAANGEELV 446 (769)
Q Consensus 367 ~~~~~~~~~~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~ 446 (769)
| ..
T Consensus 319 ---------------y------------------------------------------------------~~-------- 321 (412)
T cd04857 319 ---------------Y------------------------------------------------------SL-------- 321 (412)
T ss_pred ---------------c------------------------------------------------------cc--------
Confidence 0 00
Q ss_pred ccccccceEEEChhhhHHHHHHHhcCCCceEEEEecceeecccCCCeeccccCCCCCCCCCCcccCeeeeCCCceeeccc
Q 044578 447 ADCHLLPAVAVGEIEGKEIKQYASTSPKATASLALLGTRVGIKPSPVVAAFSSRGPNFLTLEILKPDIVAPGVNILAAWS 526 (769)
Q Consensus 447 ~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~ 526 (769)
.....+.++.||||||+. ++++||||+|||++|.+.-.
T Consensus 322 ----------------------------------------~~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~p~ 359 (412)
T cd04857 322 ----------------------------------------REKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIASVPN 359 (412)
T ss_pred ----------------------------------------ccccCCccccccccCCcc--cCCcCceEEeCCCcEEEccc
Confidence 001123688999999998 68999999999999987522
Q ss_pred CCCCCCCCCCCccccceeeeccccchhhhhHHHHHHHHh----hCCCCCHHHHHHHHHhccccc
Q 044578 527 GETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKA----RHPEWSPAAIKSALMTTAYVH 586 (769)
Q Consensus 527 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~lsp~~ik~~L~~TA~~~ 586 (769)
... ..|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 360 ~~~-----------~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 360 WTL-----------QGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred CCC-----------CCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 111 2689999999999999999999975 478999999999999999864
No 16
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.8e-44 Score=376.09 Aligned_cols=243 Identities=28% Similarity=0.360 Sum_probs=194.3
Q ss_pred CcEEEEeccccCCCCCCcccCCCCCCCCccccccccCCCcccccCCceeEeeEecccchhhccCcccccCCCCCCCCCCC
Q 044578 139 DVIVGVLDTGIWPESASFNDTGMTPVPAHWKGACETGRGFQKHHCNRKIVGARVFYRGYEAATGKINEQNEYKSPRDQDG 218 (769)
Q Consensus 139 Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 218 (769)
||+||||||||+++||+|.... ...+.++.+.++|.++.. ....|..+
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~--------------------~~~~~~i~~~~~~~~~~~------------~~~~~~~~ 48 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKH--------------------LFKNLRILGEYDFVDNSN------------NTNYTDDD 48 (261)
T ss_pred CCEEEEEccCCCccCcchhhhc--------------------cccCCceeeeecCccCCC------------CCCCCCCC
Confidence 7999999999999999994210 012345666666655421 01357889
Q ss_pred ChhhhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeCCC---CCHHHHHHHHHHHHhCCCcEEEeccCCCCCC
Q 044578 219 HGTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSGG---CFSSDILSAVDRAVADGVNVLSISLGGGVSS 295 (769)
Q Consensus 219 HGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g---~~~sdi~~ai~~a~~~g~dVIn~SlG~~~~~ 295 (769)
|||||||||+|+.. +.+.||||+|+|+.+|+..... ....+++.|++|+.+.+++|||||||.....
T Consensus 49 HGT~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~ 118 (261)
T cd07493 49 HGTAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFD 118 (261)
T ss_pred chhhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCC
Confidence 99999999999853 2258999999999999876433 3455788999999999999999999976532
Q ss_pred Cc------------cchHHHHHHHHHhcCcEEEEecCCCCCC---CCcccCCCCceEEecCCCCCCceeeEEEeCCCcEE
Q 044578 296 YH------------RDSLSIATFGAMEMGVFVSCSAGNGGPD---PVSLTNVSPWITTVGASTLDRDFPATVKLGTGRTI 360 (769)
Q Consensus 296 ~~------------~~~~~~~~~~a~~~Gi~vV~AAGN~G~~---~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~ 360 (769)
.. ...+..++.++.++|+++|+||||+|.. ....+...+++|+|||..
T Consensus 119 ~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~----------------- 181 (261)
T cd07493 119 NPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVD----------------- 181 (261)
T ss_pred CcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEec-----------------
Confidence 21 1346677778889999999999999977 345677788999999732
Q ss_pred EEEEeccCCcCCCCCccccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCC
Q 044578 361 TGVSLYKGRRALLPNKQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAA 440 (769)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 440 (769)
T Consensus 182 -------------------------------------------------------------------------------- 181 (261)
T cd07493 182 -------------------------------------------------------------------------------- 181 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccccceEEEChhhhHHHHHHHhcCCCceEEEEecceeecccCCCeeccccCCCCCCCCCCcccCeeeeCCCc
Q 044578 441 NGEELVADCHLLPAVAVGEIEGKEIKQYASTSPKATASLALLGTRVGIKPSPVVAAFSSRGPNFLTLEILKPDIVAPGVN 520 (769)
Q Consensus 441 ~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~ 520 (769)
..+.++.||++||+. ++++||||+|||.+
T Consensus 182 -------------------------------------------------~~~~~~~~S~~G~~~--~~~~~pdi~a~G~~ 210 (261)
T cd07493 182 -------------------------------------------------ANGNKASFSSIGPTA--DGRLKPDVMALGTG 210 (261)
T ss_pred -------------------------------------------------cCCCCCccCCcCCCC--CCCcCCceEecCCC
Confidence 112567899999987 58999999999999
Q ss_pred eeecccCCCCCCCCCCCccccceeeeccccchhhhhHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044578 521 ILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSPAAIKSALMTTAY 584 (769)
Q Consensus 521 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 584 (769)
+++..... .|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 211 ~~~~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 211 IYVINGDG-------------NITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred eEEEcCCC-------------cEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 99854432 7899999999999999999999999999999999999999984
No 17
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=1.2e-43 Score=374.58 Aligned_cols=263 Identities=30% Similarity=0.392 Sum_probs=201.0
Q ss_pred CccccCCCCCCcEEEEeccccCCCCCCcccCCCCCCCCccccccccCCCcccccCCceeEeeEecccchhhccCcccccC
Q 044578 129 SIWSQKVADYDVIVGVLDTGIWPESASFNDTGMTPVPAHWKGACETGRGFQKHHCNRKIVGARVFYRGYEAATGKINEQN 208 (769)
Q Consensus 129 ~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 208 (769)
++|..+++|+||+|+|||||||++||+|.+.... .++. .+...+.... +...
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~-------------~~~~------------~~~~~~~~~~---~~~~ 52 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDG-------------DGYD------------PAVNGYNFVP---NVGD 52 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCC-------------CCcc------------cccCCccccc---ccCC
Confidence 3799999999999999999999999999865110 0000 0001100000 0000
Q ss_pred CCCCCCCCCCChhhhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeCCC-CCHHHHHHHHHHHHhCCCcEEEe
Q 044578 209 EYKSPRDQDGHGTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSGG-CFSSDILSAVDRAVADGVNVLSI 287 (769)
Q Consensus 209 ~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~sdi~~ai~~a~~~g~dVIn~ 287 (769)
......|..||||||||||+|+.++.....|.+ .+.|+||+|+|+.+|++...+ ....+++++|+|+++.+++||||
T Consensus 53 ~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~ 130 (273)
T cd07485 53 IDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQN 130 (273)
T ss_pred cCCCCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEe
Confidence 122356778999999999999865543222221 236799999999999998765 77788999999999999999999
Q ss_pred ccCCCCCCCccchHHHHHHHHHhc-------CcEEEEecCCCCCCCCcccCCCCceEEecCCCCCCceeeEEEeCCCcEE
Q 044578 288 SLGGGVSSYHRDSLSIATFGAMEM-------GVFVSCSAGNGGPDPVSLTNVSPWITTVGASTLDRDFPATVKLGTGRTI 360 (769)
Q Consensus 288 SlG~~~~~~~~~~~~~~~~~a~~~-------Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~ 360 (769)
|||......+...+..++..+.++ |+++|+||||+|......++..|++|+||+.+.
T Consensus 131 S~g~~~~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~---------------- 194 (273)
T cd07485 131 SWGGTGGGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDT---------------- 194 (273)
T ss_pred cCCCCCccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccC----------------
Confidence 999865434455666677778777 999999999999887777888899999997321
Q ss_pred EEEEeccCCcCCCCCccccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCC
Q 044578 361 TGVSLYKGRRALLPNKQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAA 440 (769)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 440 (769)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccccceEEEChhhhHHHHHHHhcCCCceEEEEecceeecccCCCeeccccCCCCCCCCCCcccCeeeeCCC-
Q 044578 441 NGEELVADCHLLPAVAVGEIEGKEIKQYASTSPKATASLALLGTRVGIKPSPVVAAFSSRGPNFLTLEILKPDIVAPGV- 519 (769)
Q Consensus 441 ~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~- 519 (769)
.+.++.||++|+.. ||+|||+
T Consensus 195 --------------------------------------------------~~~~~~~S~~g~~~--------~i~apG~~ 216 (273)
T cd07485 195 --------------------------------------------------NDNKASFSNYGRWV--------DIAAPGVG 216 (273)
T ss_pred --------------------------------------------------CCCcCccccCCCce--------EEEeCCCC
Confidence 12567899999877 9999999
Q ss_pred ceeecccCCCCCCCCCCCccccceeeeccccchhhhhHHHHHHHHhhCCC-CCHHHHHHHHHhc
Q 044578 520 NILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPE-WSPAAIKSALMTT 582 (769)
Q Consensus 520 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~-lsp~~ik~~L~~T 582 (769)
.|+++.+.... .....|..++|||||||+|||++|||+|++|. |+|.|||++|++|
T Consensus 217 ~i~~~~~~~~~-------~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 217 TILSTVPKLDG-------DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred ccccccccccC-------CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 89888765311 11237899999999999999999999999999 9999999999986
No 18
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=3.7e-43 Score=367.51 Aligned_cols=232 Identities=37% Similarity=0.514 Sum_probs=193.7
Q ss_pred ccccCCCCCCcEEEEeccccCCCCCCcccCCCCCCCCccccccccCCCcccccCCceeEeeEecccchhhccCcccccCC
Q 044578 130 IWSQKVADYDVIVGVLDTGIWPESASFNDTGMTPVPAHWKGACETGRGFQKHHCNRKIVGARVFYRGYEAATGKINEQNE 209 (769)
Q Consensus 130 ~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~ 209 (769)
+|..+++|+||+|+|||+||+++||+|.++ +...+.+...
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~---------------------------~~~~~~~~~~------------- 56 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR---------------------------AIWGADFVGG------------- 56 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC---------------------------eeeeeecCCC-------------
Confidence 677789999999999999999999999753 1112222211
Q ss_pred CCCCCCCCCChhhhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeCCC-CCHHHHHHHHHHHHhC-----CCc
Q 044578 210 YKSPRDQDGHGTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSGG-CFSSDILSAVDRAVAD-----GVN 283 (769)
Q Consensus 210 ~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~sdi~~ai~~a~~~-----g~d 283 (769)
....|..+|||||||||+++. .||||+|+|+.+|+++..+ ...++++++++|+++. +++
T Consensus 57 -~~~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~ 121 (255)
T cd04077 57 -DPDSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPA 121 (255)
T ss_pred -CCCCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCe
Confidence 115678899999999999873 7999999999999998875 7778899999999987 489
Q ss_pred EEEeccCCCCCCCccchHHHHHHHHHhcCcEEEEecCCCCCCC-CcccCCCCceEEecCCCCCCceeeEEEeCCCcEEEE
Q 044578 284 VLSISLGGGVSSYHRDSLSIATFGAMEMGVFVSCSAGNGGPDP-VSLTNVSPWITTVGASTLDRDFPATVKLGTGRTITG 362 (769)
Q Consensus 284 VIn~SlG~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~ 362 (769)
|||||||+.. ...+..++.++.++|+++|+||||+|... ...+...|++|+||+.+.
T Consensus 122 iin~S~g~~~----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~------------------ 179 (255)
T cd04077 122 VANMSLGGGA----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDS------------------ 179 (255)
T ss_pred EEEeCCCCCC----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCC------------------
Confidence 9999999865 34566677788899999999999999775 456677899999998321
Q ss_pred EEeccCCcCCCCCccccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCCCC
Q 044578 363 VSLYKGRRALLPNKQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAANG 442 (769)
Q Consensus 363 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~ 442 (769)
T Consensus 180 -------------------------------------------------------------------------------- 179 (255)
T cd04077 180 -------------------------------------------------------------------------------- 179 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccceEEEChhhhHHHHHHHhcCCCceEEEEecceeecccCCCeeccccCCCCCCCCCCcccCeeeeCCCcee
Q 044578 443 EELVADCHLLPAVAVGEIEGKEIKQYASTSPKATASLALLGTRVGIKPSPVVAAFSSRGPNFLTLEILKPDIVAPGVNIL 522 (769)
Q Consensus 443 ~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~ 522 (769)
.+.++.||++||.. ||+|||.+|.
T Consensus 180 ------------------------------------------------~~~~~~~S~~g~~~--------~i~apG~~i~ 203 (255)
T cd04077 180 ------------------------------------------------DDARASFSNYGSCV--------DIFAPGVDIL 203 (255)
T ss_pred ------------------------------------------------CCCccCcccCCCCC--------cEEeCCCCeE
Confidence 12467899999987 9999999999
Q ss_pred ecccCCCCCCCCCCCccccceeeeccccchhhhhHHHHHHHHhhCCCCCHHHHHHHHHhcccc
Q 044578 523 AAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSPAAIKSALMTTAYV 585 (769)
Q Consensus 523 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~ 585 (769)
++..... ..|..++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 204 ~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 204 SAWIGSD-----------TATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred ecccCCC-----------CcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 9877422 279999999999999999999999999999999999999999974
No 19
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.8e-43 Score=368.86 Aligned_cols=256 Identities=36% Similarity=0.497 Sum_probs=202.8
Q ss_pred CCCcEEEEeccccCCCCCCcccCCCCCCCCccccccccCCCcccccCCceeEeeEecccchhhccCcccccCCCCCCCCC
Q 044578 137 DYDVIVGVLDTGIWPESASFNDTGMTPVPAHWKGACETGRGFQKHHCNRKIVGARVFYRGYEAATGKINEQNEYKSPRDQ 216 (769)
Q Consensus 137 G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~D~ 216 (769)
|+||+|+|||+||+++||+|.+.... .+.+.... .......|.
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~---------------------------~~~~~~~~----------~~~~~~~d~ 43 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR---------------------------FADFVNTV----------NGRTTPYDD 43 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc---------------------------cccccccc----------cCCCCCCCC
Confidence 89999999999999999999764110 00010000 112235677
Q ss_pred CCChhhhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeCCC-CCHHHHHHHHHHHHhC----CCcEEEeccCC
Q 044578 217 DGHGTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSGG-CFSSDILSAVDRAVAD----GVNVLSISLGG 291 (769)
Q Consensus 217 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~sdi~~ai~~a~~~----g~dVIn~SlG~ 291 (769)
.+|||||||+|+|...+. .+.+.||||+|+|+.+|+++..+ ...+++++||+|+++. +++|||||||.
T Consensus 44 ~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~ 116 (264)
T cd07487 44 NGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGA 116 (264)
T ss_pred CCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCC
Confidence 899999999999986542 12248999999999999998876 6788999999999998 99999999998
Q ss_pred CCC-CCccchHHHHHHHHHhcCcEEEEecCCCCCCCC--cccCCCCceEEecCCCCCCceeeEEEeCCCcEEEEEEeccC
Q 044578 292 GVS-SYHRDSLSIATFGAMEMGVFVSCSAGNGGPDPV--SLTNVSPWITTVGASTLDRDFPATVKLGTGRTITGVSLYKG 368 (769)
Q Consensus 292 ~~~-~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~--~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~~~~~ 368 (769)
... ....+.+..++.++.++|+++|+||||+|.... ..+...+++|+|||...+..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~--------------------- 175 (264)
T cd07487 117 PPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP--------------------- 175 (264)
T ss_pred CCCCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC---------------------
Confidence 653 345677888888999999999999999998765 55667889999998432211
Q ss_pred CcCCCCCccccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCCCCcccccc
Q 044578 369 RRALLPNKQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAANGEELVAD 448 (769)
Q Consensus 369 ~~~~~~~~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~ 448 (769)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceEEEChhhhHHHHHHHhcCCCceEEEEecceeecccCCCeeccccCCCCCCCCCCcccCeeeeCCCceeecccCC
Q 044578 449 CHLLPAVAVGEIEGKEIKQYASTSPKATASLALLGTRVGIKPSPVVAAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGE 528 (769)
Q Consensus 449 ~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~ 528 (769)
....++.||++||+. ++++||||+|||++|+++.+..
T Consensus 176 -----------------------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~ 212 (264)
T cd07487 176 -----------------------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPG 212 (264)
T ss_pred -----------------------------------------CCccccccccCCCCC--CCCcCCCEEccccceEeccccc
Confidence 001578899999998 5899999999999999986543
Q ss_pred CCCCCCCCCccccceeeeccccchhhhhHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044578 529 TGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSPAAIKSALMTTAY 584 (769)
Q Consensus 529 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 584 (769)
... .......|..++|||||||+|||++|||+|++|.|++.+||++|++||+
T Consensus 213 ~~~----~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 213 GNP----GAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred ccc----CCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 111 1122247899999999999999999999999999999999999999985
No 20
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=9.6e-43 Score=365.57 Aligned_cols=250 Identities=32% Similarity=0.447 Sum_probs=207.5
Q ss_pred cccCcCCCCCCCccccCCCCCCcEEEEeccccCCCCCCcccCCCCCCCCccccccccCCCcccccCCceeEeeEecccch
Q 044578 118 LFLGLEPADSTSIWSQKVADYDVIVGVLDTGIWPESASFNDTGMTPVPAHWKGACETGRGFQKHHCNRKIVGARVFYRGY 197 (769)
Q Consensus 118 ~~~g~~~~~~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~ki~g~~~~~~~~ 197 (769)
..|.+..++...+|..+ +|+||+|+|||+||+++||+|... ++...+++.++
T Consensus 9 ~~w~~~~~~~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~--------------------------~~~~~~~~~~~- 60 (260)
T cd07484 9 YQWNLDQIGAPKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV--------------------------KFVLGYDFVDN- 60 (260)
T ss_pred cCCCccccChHHHHhhc-CCCCCEEEEEeCCCCCCCcccccC--------------------------CcccceeccCC-
Confidence 45777777668899988 999999999999999999998422 12222233222
Q ss_pred hhccCcccccCCCCCCCCCCCChhhhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeCCC-CCHHHHHHHHHH
Q 044578 198 EAATGKINEQNEYKSPRDQDGHGTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSGG-CFSSDILSAVDR 276 (769)
Q Consensus 198 ~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~sdi~~ai~~ 276 (769)
...+.|..+|||||||||++...+... +.|+||+|+|+.+|+++..+ +...+++++|++
T Consensus 61 ------------~~~~~d~~~HGT~vagii~~~~~~~~~--------~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~ 120 (260)
T cd07484 61 ------------DSDAMDDNGHGTHVAGIIAAATNNGTG--------VAGVAPKAKIMPVKVLDANGSGSLADIANGIRY 120 (260)
T ss_pred ------------CCCCCCCCCcHHHHHHHHhCccCCCCc--------eEeECCCCEEEEEEEECCCCCcCHHHHHHHHHH
Confidence 112567889999999999987544322 48999999999999998766 778899999999
Q ss_pred HHhCCCcEEEeccCCCCCCCccchHHHHHHHHHhcCcEEEEecCCCCCCCCcccCCCCceEEecCCCCCCceeeEEEeCC
Q 044578 277 AVADGVNVLSISLGGGVSSYHRDSLSIATFGAMEMGVFVSCSAGNGGPDPVSLTNVSPWITTVGASTLDRDFPATVKLGT 356 (769)
Q Consensus 277 a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~ 356 (769)
+++.+++|||||||... ....+..++..+.++|++||+||||+|.....+++..+++|+||+.+.
T Consensus 121 a~~~~~~iin~S~g~~~---~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~------------ 185 (260)
T cd07484 121 AADKGAKVINLSLGGGL---GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQ------------ 185 (260)
T ss_pred HHHCCCeEEEecCCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCC------------
Confidence 99999999999999864 345566677788899999999999999988888999999999997321
Q ss_pred CcEEEEEEeccCCcCCCCCccccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEe
Q 044578 357 GRTITGVSLYKGRRALLPNKQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILA 436 (769)
Q Consensus 357 g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~ 436 (769)
T Consensus 186 -------------------------------------------------------------------------------- 185 (260)
T cd07484 186 -------------------------------------------------------------------------------- 185 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCccccccccccceEEEChhhhHHHHHHHhcCCCceEEEEecceeecccCCCeeccccCCCCCCCCCCcccCeeee
Q 044578 437 NTAANGEELVADCHLLPAVAVGEIEGKEIKQYASTSPKATASLALLGTRVGIKPSPVVAAFSSRGPNFLTLEILKPDIVA 516 (769)
Q Consensus 437 n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~A 516 (769)
.+.++.||++|+.. |++|
T Consensus 186 ------------------------------------------------------~~~~~~~s~~g~~~--------~~~a 203 (260)
T cd07484 186 ------------------------------------------------------DDKRASFSNYGKWV--------DVSA 203 (260)
T ss_pred ------------------------------------------------------CCCcCCcCCCCCCc--------eEEe
Confidence 12567899999876 9999
Q ss_pred CCCceeecccCCCCCCCCCCCccccceeeeccccchhhhhHHHHHHHHhhCCCCCHHHHHHHHHhccccc
Q 044578 517 PGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSPAAIKSALMTTAYVH 586 (769)
Q Consensus 517 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~ 586 (769)
||.+|+++.+.. .|..++|||||||+|||++||+++++| |++.+||++|++||+++
T Consensus 204 pG~~i~~~~~~~-------------~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 204 PGGGILSTTPDG-------------DYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred CCCCcEeecCCC-------------CEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 999999987664 799999999999999999999999999 99999999999999875
No 21
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.5e-42 Score=365.79 Aligned_cols=207 Identities=33% Similarity=0.478 Sum_probs=168.0
Q ss_pred CCCCCCCChhhhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeCCCCCHHHHHHHHHHHH----------hCC
Q 044578 212 SPRDQDGHGTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSGGCFSSDILSAVDRAV----------ADG 281 (769)
Q Consensus 212 ~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~sdi~~ai~~a~----------~~g 281 (769)
...+..+|||||||||+|...++. | +.||||+|+|+.+|+++..+...+++++|++|++ .++
T Consensus 66 ~~~~~~~HGT~vAgiiaa~~~~~~---~-----~~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~ 137 (285)
T cd07496 66 GVSPSSWHGTHVAGTIAAVTNNGV---G-----VAGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNP 137 (285)
T ss_pred CCCCCCCCHHHHHHHHhCcCCCCC---C-----ceeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCC
Confidence 355678999999999999875332 2 3899999999999999887778899999999998 457
Q ss_pred CcEEEeccCCCCCCCccchHHHHHHHHHhcCcEEEEecCCCCCCC-CcccCCCCceEEecCCCCCCceeeEEEeCCCcEE
Q 044578 282 VNVLSISLGGGVSSYHRDSLSIATFGAMEMGVFVSCSAGNGGPDP-VSLTNVSPWITTVGASTLDRDFPATVKLGTGRTI 360 (769)
Q Consensus 282 ~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~ 360 (769)
++|||||||..... ...+..++..+.++|++||+||||+|... ...+...+++|+|||.+.
T Consensus 138 ~~Iin~S~G~~~~~--~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~---------------- 199 (285)
T cd07496 138 AKVINLSLGGDGAC--SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDL---------------- 199 (285)
T ss_pred CeEEEeCCCCCCCC--CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCC----------------
Confidence 89999999986432 45667777788899999999999999876 566778889999997321
Q ss_pred EEEEeccCCcCCCCCccccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCC
Q 044578 361 TGVSLYKGRRALLPNKQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAA 440 (769)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 440 (769)
T Consensus 200 -------------------------------------------------------------------------------- 199 (285)
T cd07496 200 -------------------------------------------------------------------------------- 199 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccccceEEEChhhhHHHHHHHhcCCCceEEEEecceeecccCCCeeccccCCCCCCCCCCcccCeeeeCCCc
Q 044578 441 NGEELVADCHLLPAVAVGEIEGKEIKQYASTSPKATASLALLGTRVGIKPSPVVAAFSSRGPNFLTLEILKPDIVAPGVN 520 (769)
Q Consensus 441 ~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~ 520 (769)
.+.++.||++||.. ||+|||++
T Consensus 200 --------------------------------------------------~~~~~~~S~~g~~v--------di~apG~~ 221 (285)
T cd07496 200 --------------------------------------------------RGQRASYSNYGPAV--------DVSAPGGD 221 (285)
T ss_pred --------------------------------------------------CCCcccccCCCCCC--------CEEeCCCC
Confidence 12678899999987 99999999
Q ss_pred eeecccCCCCCC--CCCCCccccceeeeccccchhhhhHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 044578 521 ILAAWSGETGPS--SLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSPAAIKSALMTT 582 (769)
Q Consensus 521 I~sa~~~~~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~T 582 (769)
|.++........ ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 222 i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 222 CASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred ccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 998876532110 00111223478999999999999999999999999999999999999986
No 22
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.2e-42 Score=370.63 Aligned_cols=263 Identities=29% Similarity=0.256 Sum_probs=185.5
Q ss_pred cEEEEeccccCCCCCCcccCCCCCCCCccccccccCCCcccccCCceeEeeEecccchhhccCcccccCCCCCCCCCCCC
Q 044578 140 VIVGVLDTGIWPESASFNDTGMTPVPAHWKGACETGRGFQKHHCNRKIVGARVFYRGYEAATGKINEQNEYKSPRDQDGH 219 (769)
Q Consensus 140 v~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~D~~gH 219 (769)
.+|||||||||..||+|.+.- .....+... .....|..||
T Consensus 1 p~VaviDtGi~~~hp~l~~~~---------------------------~~~~~~~~~-------------~~~~~d~~gH 40 (291)
T cd04847 1 PIVCVLDSGINRGHPLLAPAL---------------------------AEDDLDSDE-------------PGWTADDLGH 40 (291)
T ss_pred CEEEEecCCCCCCChhhhhhh---------------------------ccccccccC-------------CCCcCCCCCC
Confidence 379999999999999997530 000111000 0015688999
Q ss_pred hhhhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeCCC-----CCHHHHHHHHHHHHhCC---CcEEEeccCC
Q 044578 220 GTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSGG-----CFSSDILSAVDRAVADG---VNVLSISLGG 291 (769)
Q Consensus 220 GThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-----~~~sdi~~ai~~a~~~g---~dVIn~SlG~ 291 (769)
||||||||++...... ...|+||+++|+.+|+++..| ....++++||+|+++.+ ++|||||||.
T Consensus 41 GT~vAgiia~~~~~~~--------~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~ 112 (291)
T cd04847 41 GTAVAGLALYGDLTLP--------GNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGS 112 (291)
T ss_pred hHHHHHHHHcCcccCC--------CCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCC
Confidence 9999999997654311 237999999999999998763 45678999999999853 4999999998
Q ss_pred CCCCCcc--chHHHHHH-HHHhcCcEEEEecCCCCCCCCc------------ccCCCCceEEecCCCCCCceeeEEEeCC
Q 044578 292 GVSSYHR--DSLSIATF-GAMEMGVFVSCSAGNGGPDPVS------------LTNVSPWITTVGASTLDRDFPATVKLGT 356 (769)
Q Consensus 292 ~~~~~~~--~~~~~~~~-~a~~~Gi~vV~AAGN~G~~~~~------------~~~~~p~vitVgA~~~~~~~~~~~~~~~ 356 (769)
....... ..+..++. .+.++|++||+||||+|..... .+...+++|+|||.+.+......
T Consensus 113 ~~~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~----- 187 (291)
T cd04847 113 PLPIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDR----- 187 (291)
T ss_pred CCCccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCc-----
Confidence 6532221 23444443 3558999999999999977543 24567899999986543220000
Q ss_pred CcEEEEEEeccCCcCCCCCccccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEe
Q 044578 357 GRTITGVSLYKGRRALLPNKQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILA 436 (769)
Q Consensus 357 g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~ 436 (769)
...
T Consensus 188 -------------------------------------s~~---------------------------------------- 190 (291)
T cd04847 188 -------------------------------------ARY---------------------------------------- 190 (291)
T ss_pred -------------------------------------ccc----------------------------------------
Confidence 000
Q ss_pred cCCCCCccccccccccceEEEChhhhHHHHHHHhcCCCceEEEEecceeecccCCCeeccccCCCCCCCCCCcccCeeee
Q 044578 437 NTAANGEELVADCHLLPAVAVGEIEGKEIKQYASTSPKATASLALLGTRVGIKPSPVVAAFSSRGPNFLTLEILKPDIVA 516 (769)
Q Consensus 437 n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~A 516 (769)
+.......+.||+|||.. ++.+||||+|
T Consensus 191 --------------------------------------------------~~~~~~~~~~fs~~Gp~~--~~~~KPDl~a 218 (291)
T cd04847 191 --------------------------------------------------SAVGPAPAGATTSSGPGS--PGPIKPDVVA 218 (291)
T ss_pred --------------------------------------------------cccccccCCCccccCCCC--CCCcCCcEEe
Confidence 000001233499999998 5899999999
Q ss_pred CCCceeecccCCCCC-----CCCCCCccccceeeeccccchhhhhHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044578 517 PGVNILAAWSGETGP-----SSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSPAAIKSALMTTAY 584 (769)
Q Consensus 517 PG~~I~sa~~~~~~~-----~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 584 (769)
||++|.+..+..... ...........|..++|||||||||||++|||+|++|+++|++||++|++||+
T Consensus 219 pG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 219 FGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred eCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 999998865422100 00001112347999999999999999999999999999999999999999984
No 23
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.9e-42 Score=357.07 Aligned_cols=253 Identities=34% Similarity=0.423 Sum_probs=187.4
Q ss_pred CcEEEEeccccCCCCCCcccCCCCCCCCccccccccCCCcccccCCceeEeeEecccchhhccCcccccCCCCCCCCCCC
Q 044578 139 DVIVGVLDTGIWPESASFNDTGMTPVPAHWKGACETGRGFQKHHCNRKIVGARVFYRGYEAATGKINEQNEYKSPRDQDG 218 (769)
Q Consensus 139 Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 218 (769)
||+|||||+|||++||+|.+. +...++|..+. ........|..+
T Consensus 1 GV~VaviDsGv~~~hp~l~~~---------------------------~~~~~~~~~~~---------~~~~~~~~d~~~ 44 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGR---------------------------VAQWADFDENR---------RISATEVFDAGG 44 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcc---------------------------cCCceeccCCC---------CCCCCCCCCCCC
Confidence 799999999999999999753 11111121110 011223567889
Q ss_pred ChhhhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeCCCCCHHHHHHHHHHHHhCCCcEEEeccCCCCCCCcc
Q 044578 219 HGTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSGGCFSSDILSAVDRAVADGVNVLSISLGGGVSSYHR 298 (769)
Q Consensus 219 HGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~sdi~~ai~~a~~~g~dVIn~SlG~~~~~~~~ 298 (769)
|||||||||+|+..+ +...||||+++|+.+|++...++..+++++||+|+++.+++|||||||..... .
T Consensus 45 HGT~vAgiia~~~~~---------~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~--~ 113 (254)
T cd07490 45 HGTHVSGTIGGGGAK---------GVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS--E 113 (254)
T ss_pred cHHHHHHHHhcCCCC---------CCEEEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC--C
Confidence 999999999998652 12479999999999999987777889999999999999999999999986533 4
Q ss_pred chHHHHHHHHHh-cCcEEEEecCCCCCCCCcccCCCCceEEecCCCCCCceeeEEEeCCCcEEEEEEeccCCcCCCCCcc
Q 044578 299 DSLSIATFGAME-MGVFVSCSAGNGGPDPVSLTNVSPWITTVGASTLDRDFPATVKLGTGRTITGVSLYKGRRALLPNKQ 377 (769)
Q Consensus 299 ~~~~~~~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 377 (769)
+.+..++....+ +|++||+||||+|......+...+++|+|||.+.+.......
T Consensus 114 ~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s------------------------- 168 (254)
T cd07490 114 DPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFS------------------------- 168 (254)
T ss_pred cHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCcc-------------------------
Confidence 455555544444 699999999999988777888899999999854321100000
Q ss_pred ccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCCCCccccccccccceEEE
Q 044578 378 YPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAANGEELVADCHLLPAVAV 457 (769)
Q Consensus 378 ~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i 457 (769)
T Consensus 169 -------------------------------------------------------------------------------- 168 (254)
T cd07490 169 -------------------------------------------------------------------------------- 168 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ChhhhHHHHHHHhcCCCceEEEEecceeecccCCCeeccccCCCCCCCCCCcccCeeeeCCCceeecccCCCCCCCCCCC
Q 044578 458 GEIEGKEIKQYASTSPKATASLALLGTRVGIKPSPVVAAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPAD 537 (769)
Q Consensus 458 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~ 537 (769)
.........++.+|... ....|||++|||.+|+++....
T Consensus 169 -------------------------------~~g~~~~~~~~~~~~~~-~~~~~~d~~apG~~i~~~~~~~--------- 207 (254)
T cd07490 169 -------------------------------SFGSSGASLVSAPDSPP-DEYTKPDVAAPGVDVYSARQGA--------- 207 (254)
T ss_pred -------------------------------CCcccccccccCCCCCc-cCCcCceEEeccCCeEccccCC---------
Confidence 00001122233344332 3578999999999999965221
Q ss_pred ccccceeeeccccchhhhhHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044578 538 HRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSPAAIKSALMTTAY 584 (769)
Q Consensus 538 ~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 584 (769)
.....|..++|||||||+|||++|||+|++|+|++.+||++|++||+
T Consensus 208 ~~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 208 NGDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred CCCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 11237999999999999999999999999999999999999999984
No 24
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.7e-42 Score=363.35 Aligned_cols=250 Identities=26% Similarity=0.386 Sum_probs=182.3
Q ss_pred CCccccCCCCCCcEEEEeccccCCCCCCcccCCCCCCCCccccccccCCCcccccCCceeEeeEecccchhhccCccccc
Q 044578 128 TSIWSQKVADYDVIVGVLDTGIWPESASFNDTGMTPVPAHWKGACETGRGFQKHHCNRKIVGARVFYRGYEAATGKINEQ 207 (769)
Q Consensus 128 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~ 207 (769)
..+|+.+++|+||+||||||||+..|| |...+. .+. . .+..+
T Consensus 11 ~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~-------~~~---------------~----~~~~~----------- 52 (298)
T cd07494 11 TRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGY-------QVR---------------V----VLAPG----------- 52 (298)
T ss_pred hHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCc-------cce---------------e----ecCCC-----------
Confidence 779999999999999999999999998 754311 000 0 00000
Q ss_pred CCCCCCCCCCCChhhhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeCCCCCHHHHHHHHHHHHhCCCcEEEe
Q 044578 208 NEYKSPRDQDGHGTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSGGCFSSDILSAVDRAVADGVNVLSI 287 (769)
Q Consensus 208 ~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~sdi~~ai~~a~~~g~dVIn~ 287 (769)
......|+.||||||||++ .||||+|+|+.+|++++ ..+++++||+||++++++||||
T Consensus 53 -~~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~---~~~~~~~ai~~a~~~g~dVIn~ 110 (298)
T cd07494 53 -ATDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP---DLVNSVGAFKKAISLSPDIISN 110 (298)
T ss_pred -CCCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC---CcHHHHHHHHHHHhcCCCEEEe
Confidence 0123567889999999865 69999999999999864 5677999999999999999999
Q ss_pred ccCCCCCCC----------ccchHHHHHHHHHhcCcEEEEecCCCCCCCCcccCCCCceEEecCCCCCCceeeEEEeCCC
Q 044578 288 SLGGGVSSY----------HRDSLSIATFGAMEMGVFVSCSAGNGGPDPVSLTNVSPWITTVGASTLDRDFPATVKLGTG 357 (769)
Q Consensus 288 SlG~~~~~~----------~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g 357 (769)
|||...... ....+..++.+|.++|++||+||||++. .+|+..|++|+|||.+.+.. +
T Consensus 111 SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~---------g 178 (298)
T cd07494 111 SWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED---------G 178 (298)
T ss_pred ecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC---------C
Confidence 999854211 1345777888889999999999999874 46889999999998543211 0
Q ss_pred cEEEEEEeccCCcCCCCCccccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEec
Q 044578 358 RTITGVSLYKGRRALLPNKQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILAN 437 (769)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n 437 (769)
. .
T Consensus 179 ~-----------~------------------------------------------------------------------- 180 (298)
T cd07494 179 A-----------R------------------------------------------------------------------- 180 (298)
T ss_pred c-----------c-------------------------------------------------------------------
Confidence 0 0
Q ss_pred CCCCCccccccccccceEEEChhhhHHHHHHHhcCCCceEEEEecceeecccCCCeeccccCCCCCCCCCCcccCee---
Q 044578 438 TAANGEELVADCHLLPAVAVGEIEGKEIKQYASTSPKATASLALLGTRVGIKPSPVVAAFSSRGPNFLTLEILKPDI--- 514 (769)
Q Consensus 438 ~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI--- 514 (769)
......+.|+|. ..+++.|||+
T Consensus 181 ---------------------------------------------------~~~~~~~~~~s~----~~~g~~~pd~~~~ 205 (298)
T cd07494 181 ---------------------------------------------------RASSYASGFRSK----IYPGRQVPDVCGL 205 (298)
T ss_pred ---------------------------------------------------cccccccCcccc----cCCCCccCccccc
Confidence 000001112111 1246677777
Q ss_pred -------------eeCCCceeecccCCCCCCCCCCCccccceeeeccccchhhhhHHHHHHHHhhCCCCCHHHHHHHHHh
Q 044578 515 -------------VAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSPAAIKSALMT 581 (769)
Q Consensus 515 -------------~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~ 581 (769)
+|||..|.++...... . ......|..++|||||||||||++|||+|++|.|++++||.+|++
T Consensus 206 ~g~~~~~~~~~~~~APG~~i~~~~~~~~~-~----~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ 280 (298)
T cd07494 206 VGMLPHAAYLMLPVPPGSQLDRSCAAFPD-G----TPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNK 280 (298)
T ss_pred cCcCCcccccccccCCCcceeccccCCCC-C----CCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 4799998765432100 0 011237999999999999999999999999999999999999999
Q ss_pred cccccC
Q 044578 582 TAYVHD 587 (769)
Q Consensus 582 TA~~~~ 587 (769)
||+++.
T Consensus 281 ta~~~~ 286 (298)
T cd07494 281 TARDVT 286 (298)
T ss_pred hCcccC
Confidence 999774
No 25
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=2.5e-41 Score=361.35 Aligned_cols=277 Identities=31% Similarity=0.380 Sum_probs=199.9
Q ss_pred cCCCCCCcEEEEeccccCCCCCCcccCCCCCCCCccccccccCCCcccccCCceeEeeEecccchhhccCcccccCCCCC
Q 044578 133 QKVADYDVIVGVLDTGIWPESASFNDTGMTPVPAHWKGACETGRGFQKHHCNRKIVGARVFYRGYEAATGKINEQNEYKS 212 (769)
Q Consensus 133 ~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~ 212 (769)
++++|+||+|||||||||++||+|.+... .+.. ..++++.....+.. .
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~------------~~~~----~~~~~~~~~~~~~~----------------~ 49 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF------------NKTN----LFHRKIVRYDSLSD----------------T 49 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc------------CcCc----cCcccEEEeeccCC----------------C
Confidence 57899999999999999999999976421 0001 12333333322221 1
Q ss_pred CCCCCCChhhhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeCCC--CCHHHHHHHHHHHHhCCCcEEEeccC
Q 044578 213 PRDQDGHGTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSGG--CFSSDILSAVDRAVADGVNVLSISLG 290 (769)
Q Consensus 213 ~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~sdi~~ai~~a~~~g~dVIn~SlG 290 (769)
..|..+|||||||||+|+..+.... ..+.|+||+|+|+.+|+++..+ ....++..+++++.+.+++|||||||
T Consensus 50 ~~d~~~HGT~vAgiia~~~~~~~~~-----~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G 124 (293)
T cd04842 50 KDDVDGHGTHVAGIIAGKGNDSSSI-----SLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWG 124 (293)
T ss_pred CCCCCCCcchhheeeccCCcCCCcc-----cccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCC
Confidence 2378999999999999987654311 1248999999999999998765 55667889999999999999999999
Q ss_pred CCCCCCccchHHHHHHHHH-h-cCcEEEEecCCCCCCCC---cccCCCCceEEecCCCCCCceeeEEEeCCCcEEEEEEe
Q 044578 291 GGVSSYHRDSLSIATFGAM-E-MGVFVSCSAGNGGPDPV---SLTNVSPWITTVGASTLDRDFPATVKLGTGRTITGVSL 365 (769)
Q Consensus 291 ~~~~~~~~~~~~~~~~~a~-~-~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~~ 365 (769)
....... .....++.++. + +|+++|+||||+|.... ..+...+++|+|||.+.......
T Consensus 125 ~~~~~~~-~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~--------------- 188 (293)
T cd04842 125 SPVNNGY-TLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG--------------- 188 (293)
T ss_pred CCCcccc-chHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc---------------
Confidence 8654211 22233333333 3 89999999999997765 66778899999998654322000
Q ss_pred ccCCcCCCCCccccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCCCCccc
Q 044578 366 YKGRRALLPNKQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAANGEEL 445 (769)
Q Consensus 366 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~ 445 (769)
..|..
T Consensus 189 --------------------------~~~~~------------------------------------------------- 193 (293)
T cd04842 189 --------------------------EGGLG------------------------------------------------- 193 (293)
T ss_pred --------------------------ccccc-------------------------------------------------
Confidence 00000
Q ss_pred cccccccceEEEChhhhHHHHHHHhcCCCceEEEEecceeecccCCCeeccccCCCCCCCCCCcccCeeeeCCCceeecc
Q 044578 446 VADCHLLPAVAVGEIEGKEIKQYASTSPKATASLALLGTRVGIKPSPVVAAFSSRGPNFLTLEILKPDIVAPGVNILAAW 525 (769)
Q Consensus 446 ~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~ 525 (769)
.......++.||++||+. ++++||||+|||++|+++.
T Consensus 194 -----------------------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~ 230 (293)
T cd04842 194 -----------------------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSAR 230 (293)
T ss_pred -----------------------------------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEecc
Confidence 011233789999999998 5899999999999999987
Q ss_pred cCCCCCCCCCCCccccceeeeccccchhhhhHHHHHHHHhhC-----C---CCCHHHHHHHHHhccc
Q 044578 526 SGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARH-----P---EWSPAAIKSALMTTAY 584 (769)
Q Consensus 526 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-----p---~lsp~~ik~~L~~TA~ 584 (769)
+.... ........|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 231 ~~~~~----~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 231 SGGGG----IGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CCCCC----CCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 55310 011122478999999999999999999999985 4 6677899999999985
No 26
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.9e-41 Score=358.24 Aligned_cols=265 Identities=30% Similarity=0.398 Sum_probs=183.8
Q ss_pred ccCCCCCCcEEEEeccccCCCCCCcccCCCCCCCCccccccccCCCcccccCCceeEeeEecccchhhccCcccccCCCC
Q 044578 132 SQKVADYDVIVGVLDTGIWPESASFNDTGMTPVPAHWKGACETGRGFQKHHCNRKIVGARVFYRGYEAATGKINEQNEYK 211 (769)
Q Consensus 132 ~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~ 211 (769)
..+++|+||+|||||+|||++||+|.+... ..++|.+. .
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~~---------------------------~~~~~~~~--------------~ 40 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRDI---------------------------TTKSFVGG--------------E 40 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCcc---------------------------cCcccCCC--------------C
Confidence 357899999999999999999999975411 11112111 1
Q ss_pred CCCCCCCChhhhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeCCC-CCHHHHHHHHHHHHhCCCcEEEeccC
Q 044578 212 SPRDQDGHGTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSGG-CFSSDILSAVDRAVADGVNVLSISLG 290 (769)
Q Consensus 212 ~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~sdi~~ai~~a~~~g~dVIn~SlG 290 (769)
.+.|..+|||||||||+|+..+. ...||||+|+|+.+|++...+ +..+++++||+|+++.+++|||||||
T Consensus 41 ~~~d~~gHGT~VAgiiag~~~~~---------~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G 111 (297)
T cd07480 41 DVQDGHGHGTHCAGTIFGRDVPG---------PRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLG 111 (297)
T ss_pred CCCCCCCcHHHHHHHHhcccCCC---------cccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccC
Confidence 24678999999999999986542 237999999999999997655 77778999999999999999999999
Q ss_pred CCCCCC----------ccchHHHHHHHH---------------HhcCcEEEEecCCCCCCCCccc-----CCCCceEEec
Q 044578 291 GGVSSY----------HRDSLSIATFGA---------------MEMGVFVSCSAGNGGPDPVSLT-----NVSPWITTVG 340 (769)
Q Consensus 291 ~~~~~~----------~~~~~~~~~~~a---------------~~~Gi~vV~AAGN~G~~~~~~~-----~~~p~vitVg 340 (769)
...... ....+......+ .++|++||+||||+|....... ...+++++|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~ 191 (297)
T cd07480 112 ADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVA 191 (297)
T ss_pred CCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEE
Confidence 854111 112222222233 6799999999999986543211 1111222222
Q ss_pred CCCCCCceeeEEEeCCCcEEEEEEeccCCcCCCCCccccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhh
Q 044578 341 ASTLDRDFPATVKLGTGRTITGVSLYKGRRALLPNKQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQ 420 (769)
Q Consensus 341 A~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~ 420 (769)
+..
T Consensus 192 ~V~----------------------------------------------------------------------------- 194 (297)
T cd07480 192 AVG----------------------------------------------------------------------------- 194 (297)
T ss_pred EEC-----------------------------------------------------------------------------
Confidence 100
Q ss_pred hhHHHhhcCceEEEEecCCCCCccccccccccceEEEChhhhHHHHHHHhcCCCceEEEEecceeecccCCCeeccccCC
Q 044578 421 KGQVVKDAGGIGVILANTAANGEELVADCHLLPAVAVGEIEGKEIKQYASTSPKATASLALLGTRVGIKPSPVVAAFSSR 500 (769)
Q Consensus 421 ~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~ 500 (769)
..+....|+++
T Consensus 195 ---------------------------------------------------------------------~~~~~~~~~~~ 205 (297)
T cd07480 195 ---------------------------------------------------------------------ALGRTGNFSAV 205 (297)
T ss_pred ---------------------------------------------------------------------CCCCCCCcccc
Confidence 00122233333
Q ss_pred CCCCCCCCcccCeeeeCCCceeecccCCCCCCCCCCCccccceeeeccccchhhhhHHHHHHHHhhCCCCCHHHHHHHHH
Q 044578 501 GPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSPAAIKSALM 580 (769)
Q Consensus 501 GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~ 580 (769)
.+. ...||||+|||++|+++.+.. .|..++|||||||+|||++|||+|++|.+++.+++.+|+
T Consensus 206 ~~~----~~~~~dv~ApG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~ 268 (297)
T cd07480 206 ANF----SNGEVDIAAPGVDIVSAAPGG-------------GYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQ 268 (297)
T ss_pred CCC----CCCceEEEeCCCCeEeecCCC-------------cEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHH
Confidence 332 245789999999999987764 799999999999999999999999999999988888888
Q ss_pred hcccccCCCCCCCCCCCCCCCCCCCCCCCcccCccc
Q 044578 581 TTAYVHDNTHNPLKDASSYEPSSPYDHGAGHINPVK 616 (769)
Q Consensus 581 ~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~vd~~~ 616 (769)
.......... .........+|+|++++.+
T Consensus 269 ~~l~~~~~~~-------~~~~~~~~~~g~G~~~~~~ 297 (297)
T cd07480 269 ARLTAARTTQ-------FAPGLDLPDRGVGLGLAPA 297 (297)
T ss_pred HHHhhcccCC-------CCCCCChhhcCCceeecCC
Confidence 5432211000 0223445589999998753
No 27
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.1e-41 Score=348.68 Aligned_cols=239 Identities=30% Similarity=0.422 Sum_probs=188.4
Q ss_pred cEEEEeccccCCCCCCcccCCCCCCCCccccccccCCCcccccCCceeEeeEecccchhhccCcccccCCCCCCCCCCCC
Q 044578 140 VIVGVLDTGIWPESASFNDTGMTPVPAHWKGACETGRGFQKHHCNRKIVGARVFYRGYEAATGKINEQNEYKSPRDQDGH 219 (769)
Q Consensus 140 v~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~D~~gH 219 (769)
|+|||||+|||++||+|.+.. ++...+.+... ...+.|..+|
T Consensus 1 V~VaviDsGi~~~hp~l~~~~-------------------------~~~~~~~~~~~-------------~~~~~~~~~H 42 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP-------------------------KLVPGWNFVSN-------------NDPTSDIDGH 42 (242)
T ss_pred CEEEEecCCCCCCChhhccCc-------------------------CccCCccccCC-------------CCCCCCCCCC
Confidence 689999999999999997520 00101111110 1135678999
Q ss_pred hhhhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeCCC-CCHHHHHHHHHHHHhCCCcEEEeccCCCCC-CCc
Q 044578 220 GTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSGG-CFSSDILSAVDRAVADGVNVLSISLGGGVS-SYH 297 (769)
Q Consensus 220 GThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~sdi~~ai~~a~~~g~dVIn~SlG~~~~-~~~ 297 (769)
||||||||+|+..+.. .+.||||+|+|+.+|+++..+ +..+++.++++|+++.+++|||||||.... ...
T Consensus 43 GT~vAgiiag~~~~~~--------~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~ 114 (242)
T cd07498 43 GTACAGVAAAVGNNGL--------GVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTESI 114 (242)
T ss_pred HHHHHHHHHhccCCCc--------eeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchH
Confidence 9999999999864332 248999999999999998765 678889999999999999999999998653 233
Q ss_pred cchHHHHHHHHHh-cCcEEEEecCCCCCCCCcccCCCCceEEecCCCCCCceeeEEEeCCCcEEEEEEeccCCcCCCCCc
Q 044578 298 RDSLSIATFGAME-MGVFVSCSAGNGGPDPVSLTNVSPWITTVGASTLDRDFPATVKLGTGRTITGVSLYKGRRALLPNK 376 (769)
Q Consensus 298 ~~~~~~~~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 376 (769)
...+..++.++.+ +|+++|+||||+|......++..+++|+|||.+.
T Consensus 115 ~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~-------------------------------- 162 (242)
T cd07498 115 SSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDS-------------------------------- 162 (242)
T ss_pred HHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCC--------------------------------
Confidence 5667777777888 9999999999999887777888999999998321
Q ss_pred cccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCCCCccccccccccceEE
Q 044578 377 QYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAANGEELVADCHLLPAVA 456 (769)
Q Consensus 377 ~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~ 456 (769)
T Consensus 163 -------------------------------------------------------------------------------- 162 (242)
T cd07498 163 -------------------------------------------------------------------------------- 162 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EChhhhHHHHHHHhcCCCceEEEEecceeecccCCCeeccccCCCCCCCCCCcccCeeeeCCCceeecccCCCCCCCCCC
Q 044578 457 VGEIEGKEIKQYASTSPKATASLALLGTRVGIKPSPVVAAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPA 536 (769)
Q Consensus 457 i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~ 536 (769)
.+.++.||++||.. |++|||+++.......... .
T Consensus 163 ----------------------------------~~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~----~ 196 (242)
T cd07498 163 ----------------------------------NDARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSA----G 196 (242)
T ss_pred ----------------------------------CCCccCcCCCCCCe--------EEEeCcCCcccCCcccccc----c
Confidence 12567899999987 9999999998875442111 1
Q ss_pred CccccceeeeccccchhhhhHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 044578 537 DHRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSPAAIKSALMTT 582 (769)
Q Consensus 537 ~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~T 582 (769)
......|..++|||||||+|||++|||+|++|+|++.|||++|++|
T Consensus 197 ~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 197 DYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred cCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 1122478999999999999999999999999999999999999976
No 28
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.7e-41 Score=353.67 Aligned_cols=244 Identities=23% Similarity=0.299 Sum_probs=176.1
Q ss_pred CCccccCC-CCCCcEEEEeccccCCCCCCcccCCCCCCCCccccccccCCCcccccCCceeEeeEecccchhhccCcccc
Q 044578 128 TSIWSQKV-ADYDVIVGVLDTGIWPESASFNDTGMTPVPAHWKGACETGRGFQKHHCNRKIVGARVFYRGYEAATGKINE 206 (769)
Q Consensus 128 ~~~~~~~~-~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 206 (769)
.++|+... .|+||+|+|||+|||.+||||.++... ...+
T Consensus 5 ~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~------------------------------~~~~---------- 44 (277)
T cd04843 5 RYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT------------------------------LISG---------- 44 (277)
T ss_pred HHHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc------------------------------ccCC----------
Confidence 56898744 599999999999999999999764110 0000
Q ss_pred cCCCCCCCCCCCChhhhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeCCCCCHHHHHHHHHHHHh----CCC
Q 044578 207 QNEYKSPRDQDGHGTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSGGCFSSDILSAVDRAVA----DGV 282 (769)
Q Consensus 207 ~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~sdi~~ai~~a~~----~g~ 282 (769)
..+.|+.+|||||||||+|..+ + +| +.||||+|+|+.+|+++ .++++++|++|++ .++
T Consensus 45 ----~~~~d~~gHGT~VAGiIaa~~n-~---~G-----~~GvAp~a~l~~i~v~~-----~~~~~~ai~~A~~~~~~~~v 106 (277)
T cd04843 45 ----LTDQADSDHGTAVLGIIVAKDN-G---IG-----VTGIAHGAQAAVVSSTR-----VSNTADAILDAADYLSPGDV 106 (277)
T ss_pred ----CCCCCCCCCcchhheeeeeecC-C---Cc-----eeeeccCCEEEEEEecC-----CCCHHHHHHHHHhccCCCCE
Confidence 0145788999999999999742 1 22 38999999999999985 3456667777766 356
Q ss_pred cEEEeccCCCCCC------CccchHHHHHHHHHhcCcEEEEecCCCCCCCCcc------------c-CCCCceEEecCCC
Q 044578 283 NVLSISLGGGVSS------YHRDSLSIATFGAMEMGVFVSCSAGNGGPDPVSL------------T-NVSPWITTVGAST 343 (769)
Q Consensus 283 dVIn~SlG~~~~~------~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~------------~-~~~p~vitVgA~~ 343 (769)
.+||||||..... .....+..++.++.++|+++|+||||++...... + ...|++|+|||.+
T Consensus 107 ~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~ 186 (277)
T cd04843 107 ILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGS 186 (277)
T ss_pred EEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEecc
Confidence 7899999986422 1233455677788899999999999998653211 0 1124566666532
Q ss_pred CCCceeeEEEeCCCcEEEEEEeccCCcCCCCCccccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhhH
Q 044578 344 LDRDFPATVKLGTGRTITGVSLYKGRRALLPNKQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQ 423 (769)
Q Consensus 344 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~ 423 (769)
.+
T Consensus 187 ~~------------------------------------------------------------------------------ 188 (277)
T cd04843 187 ST------------------------------------------------------------------------------ 188 (277)
T ss_pred CC------------------------------------------------------------------------------
Confidence 10
Q ss_pred HHhhcCceEEEEecCCCCCccccccccccceEEEChhhhHHHHHHHhcCCCceEEEEecceeecccCCCeeccccCCCCC
Q 044578 424 VVKDAGGIGVILANTAANGEELVADCHLLPAVAVGEIEGKEIKQYASTSPKATASLALLGTRVGIKPSPVVAAFSSRGPN 503 (769)
Q Consensus 424 ~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~GP~ 503 (769)
....++.||++||.
T Consensus 189 ------------------------------------------------------------------~~~~~~~fSn~G~~ 202 (277)
T cd04843 189 ------------------------------------------------------------------TGHTRLAFSNYGSR 202 (277)
T ss_pred ------------------------------------------------------------------CCCccccccCCCCc
Confidence 00137899999997
Q ss_pred CCCCCcccCeeeeCCCceeecccCCCCCCCCCCCccccceeeeccccchhhhhHHHHHHHHh----h-CCCCCHHHHHHH
Q 044578 504 FLTLEILKPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKA----R-HPEWSPAAIKSA 578 (769)
Q Consensus 504 ~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~-~p~lsp~~ik~~ 578 (769)
. ||+|||++|+++.+...... .......|..++|||||||||||++|||++ + +|+|+|+|||++
T Consensus 203 v--------di~APG~~i~s~~~~~~~~~---~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~ 271 (277)
T cd04843 203 V--------DVYGWGENVTTTGYGDLQDL---GGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMREL 271 (277)
T ss_pred c--------ceEcCCCCeEecCCCCcccc---cCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Confidence 6 99999999999987643210 011112457899999999999999999975 3 499999999999
Q ss_pred HHhccc
Q 044578 579 LMTTAY 584 (769)
Q Consensus 579 L~~TA~ 584 (769)
|++|++
T Consensus 272 L~~t~~ 277 (277)
T cd04843 272 LTATGT 277 (277)
T ss_pred HHhcCC
Confidence 999974
No 29
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2e-40 Score=347.88 Aligned_cols=249 Identities=32% Similarity=0.481 Sum_probs=189.9
Q ss_pred CCcEEEEeccccCCCCCCcccCCCCCCCCccccc---cccCCCcccccCCceeEeeEecccchhhccCcccccCCCCCCC
Q 044578 138 YDVIVGVLDTGIWPESASFNDTGMTPVPAHWKGA---CETGRGFQKHHCNRKIVGARVFYRGYEAATGKINEQNEYKSPR 214 (769)
Q Consensus 138 ~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~---~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (769)
+||+|||||||||++||+|.++ .|... +..+..... ...+.. ..+++. .....++.
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~-------~~~~~~~~~~~~~~~~~----~~~~~~---~~~~~~-------~~~~~~~~ 60 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDN-------MWVNPGEIPGNGIDDDG----NGYVDD---IYGWNF-------VNNDNDPM 60 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccc-------cccCcccccccCcccCC----CCcccC---CCcccc-------cCCCCCCC
Confidence 6999999999999999999874 23211 111111000 000000 001111 11233467
Q ss_pred CCCCChhhhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeCCC-CCHHHHHHHHHHHHhCCCcEEEeccCCCC
Q 044578 215 DQDGHGTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSGG-CFSSDILSAVDRAVADGVNVLSISLGGGV 293 (769)
Q Consensus 215 D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~sdi~~ai~~a~~~g~dVIn~SlG~~~ 293 (769)
|..+|||||||||+|...+... +.|+||+|+|+.+|++...+ ++..+++++++++++.+++|||+|||...
T Consensus 61 d~~~HGT~va~ii~~~~~~~~~--------~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~ 132 (259)
T cd07473 61 DDNGHGTHVAGIIGAVGNNGIG--------IAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGG 132 (259)
T ss_pred CCCCcHHHHHHHHHCcCCCCCc--------eEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCC
Confidence 8899999999999998754432 48999999999999998877 78889999999999999999999999864
Q ss_pred CCCccchHHHHHHHHHhcCcEEEEecCCCCCCC---CcccC--CCCceEEecCCCCCCceeeEEEeCCCcEEEEEEeccC
Q 044578 294 SSYHRDSLSIATFGAMEMGVFVSCSAGNGGPDP---VSLTN--VSPWITTVGASTLDRDFPATVKLGTGRTITGVSLYKG 368 (769)
Q Consensus 294 ~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~---~~~~~--~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~~~~~ 368 (769)
. ...+..++.++.++|+++|+||||+|... ..++. ..+++|+||+.+.
T Consensus 133 ~---~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~------------------------ 185 (259)
T cd07473 133 P---SQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDS------------------------ 185 (259)
T ss_pred C---CHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCC------------------------
Confidence 3 45677777788899999999999998762 23333 3478888886321
Q ss_pred CcCCCCCccccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCCCCcccccc
Q 044578 369 RRALLPNKQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAANGEELVAD 448 (769)
Q Consensus 369 ~~~~~~~~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~ 448 (769)
T Consensus 186 -------------------------------------------------------------------------------- 185 (259)
T cd07473 186 -------------------------------------------------------------------------------- 185 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceEEEChhhhHHHHHHHhcCCCceEEEEecceeecccCCCeeccccCCCCCCCCCCcccCeeeeCCCceeecccCC
Q 044578 449 CHLLPAVAVGEIEGKEIKQYASTSPKATASLALLGTRVGIKPSPVVAAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGE 528 (769)
Q Consensus 449 ~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~ 528 (769)
.+.++.||++||. +||++|||.++++..+..
T Consensus 186 ------------------------------------------~~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~~ 216 (259)
T cd07473 186 ------------------------------------------NDALASFSNYGKK-------TVDLAAPGVDILSTSPGG 216 (259)
T ss_pred ------------------------------------------CCCcCcccCCCCC-------CcEEEeccCCeEeccCCC
Confidence 1256679999985 359999999999976554
Q ss_pred CCCCCCCCCccccceeeeccccchhhhhHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044578 529 TGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSPAAIKSALMTTAY 584 (769)
Q Consensus 529 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 584 (769)
.|..++|||||||+|||++||++|++|.+++.+||++|++||+
T Consensus 217 -------------~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 217 -------------GYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred -------------cEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 7999999999999999999999999999999999999999984
No 30
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=8e-40 Score=336.88 Aligned_cols=226 Identities=35% Similarity=0.520 Sum_probs=185.5
Q ss_pred CcEEEEeccccCCCCCCcccCCCCCCCCccccccccCCCcccccCCceeEeeEecccchhhccCcccccCCCCCCCCCCC
Q 044578 139 DVIVGVLDTGIWPESASFNDTGMTPVPAHWKGACETGRGFQKHHCNRKIVGARVFYRGYEAATGKINEQNEYKSPRDQDG 218 (769)
Q Consensus 139 Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 218 (769)
||+|||||+||+++||+|.+. +...++|.... .....|..+
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~---------------------------~~~~~~~~~~~------------~~~~~~~~~ 41 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN---------------------------IVGGANFTGDD------------NNDYQDGNG 41 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc---------------------------ccCcccccCCC------------CCCCCCCCC
Confidence 799999999999999999753 11111221110 023567889
Q ss_pred ChhhhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeCCC-CCHHHHHHHHHHHHhCCCcEEEeccCCCCCCCc
Q 044578 219 HGTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSGG-CFSSDILSAVDRAVADGVNVLSISLGGGVSSYH 297 (769)
Q Consensus 219 HGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~sdi~~ai~~a~~~g~dVIn~SlG~~~~~~~ 297 (769)
|||||||+|++..... .+.|+||+|+|+.+|+++..+ +...+++++++++++.+++|||||||....
T Consensus 42 HGT~vA~ii~~~~~~~---------~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~~--- 109 (229)
T cd07477 42 HGTHVAGIIAALDNGV---------GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPSD--- 109 (229)
T ss_pred CHHHHHHHHhcccCCC---------ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCCC---
Confidence 9999999999986432 248999999999999998776 677899999999999999999999997532
Q ss_pred cchHHHHHHHHHhcCcEEEEecCCCCCCCCcc--cCCCCceEEecCCCCCCceeeEEEeCCCcEEEEEEeccCCcCCCCC
Q 044578 298 RDSLSIATFGAMEMGVFVSCSAGNGGPDPVSL--TNVSPWITTVGASTLDRDFPATVKLGTGRTITGVSLYKGRRALLPN 375 (769)
Q Consensus 298 ~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 375 (769)
...+..++..+.++|+++|+||||++...... ++..+++|+||+.+.
T Consensus 110 ~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~------------------------------- 158 (229)
T cd07477 110 SPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDS------------------------------- 158 (229)
T ss_pred CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecC-------------------------------
Confidence 33455666688899999999999999776654 788899999997331
Q ss_pred ccccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCCCCccccccccccceE
Q 044578 376 KQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAANGEELVADCHLLPAV 455 (769)
Q Consensus 376 ~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~ 455 (769)
T Consensus 159 -------------------------------------------------------------------------------- 158 (229)
T cd07477 159 -------------------------------------------------------------------------------- 158 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEChhhhHHHHHHHhcCCCceEEEEecceeecccCCCeeccccCCCCCCCCCCcccCeeeeCCCceeecccCCCCCCCCC
Q 044578 456 AVGEIEGKEIKQYASTSPKATASLALLGTRVGIKPSPVVAAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLP 535 (769)
Q Consensus 456 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~ 535 (769)
.+.++.||++|+.. |+.|||++|+++++..
T Consensus 159 -----------------------------------~~~~~~~s~~g~~~--------~~~apg~~i~~~~~~~------- 188 (229)
T cd07477 159 -----------------------------------NNNRASFSSTGPEV--------ELAAPGVDILSTYPNN------- 188 (229)
T ss_pred -----------------------------------CCCcCCccCCCCCc--------eEEeCCCCeEEecCCC-------
Confidence 12566899999876 9999999999998764
Q ss_pred CCccccceeeeccccchhhhhHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 044578 536 ADHRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSPAAIKSALMTT 582 (769)
Q Consensus 536 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~T 582 (769)
.|..++|||||||+|||++|||+|++|+++|.+||++|++|
T Consensus 189 ------~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 189 ------DYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred ------CEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 78999999999999999999999999999999999999986
No 31
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=7.1e-40 Score=350.35 Aligned_cols=150 Identities=29% Similarity=0.354 Sum_probs=106.6
Q ss_pred CcEEEEeccccCCCCCCcccCCCCCCCCccccccccCCCcccccCCceeEeeEecccchhhccCcccccCCCCCCCCCCC
Q 044578 139 DVIVGVLDTGIWPESASFNDTGMTPVPAHWKGACETGRGFQKHHCNRKIVGARVFYRGYEAATGKINEQNEYKSPRDQDG 218 (769)
Q Consensus 139 Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 218 (769)
.|+|||||||||++||+|.+.-.. ..+.+.....................|..|
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 54 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISS--------------------------YSKNLVPKGGYDGKEAGETGDINDIVDKLG 54 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhcccc--------------------------cccccccCCCcCCccccccCCCCcCCCCCC
Confidence 489999999999999999853110 000000000000000001111234567899
Q ss_pred ChhhhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeCCC-CCHHHHHHHHHHHHhCCCcEEEeccCCCCCCCc
Q 044578 219 HGTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSGG-CFSSDILSAVDRAVADGVNVLSISLGGGVSSYH 297 (769)
Q Consensus 219 HGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~sdi~~ai~~a~~~g~dVIn~SlG~~~~~~~ 297 (769)
|||||||+|+|+.. ..||||+|+|+.+|+++..+ ....+++++|+||++++++|||||||.......
T Consensus 55 HGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~ 122 (294)
T cd07482 55 HGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGG 122 (294)
T ss_pred cHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCc
Confidence 99999999998742 25999999999999998877 488899999999999999999999997542211
Q ss_pred --------cchHHHHHHHHHhcCcEEEEecCCCCCCC
Q 044578 298 --------RDSLSIATFGAMEMGVFVSCSAGNGGPDP 326 (769)
Q Consensus 298 --------~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~ 326 (769)
.+.+..++..+.++|++||+||||+|...
T Consensus 123 ~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~ 159 (294)
T cd07482 123 EYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDV 159 (294)
T ss_pred ccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCccc
Confidence 23456666678899999999999998654
No 32
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=7.2e-41 Score=355.81 Aligned_cols=274 Identities=36% Similarity=0.490 Sum_probs=208.1
Q ss_pred EEEEeccccCCCCCCcc-cCCCCCCCCccccccccCCCcccccCCceeEeeEecccchhhccCcccccCCCCCCCCCCCC
Q 044578 141 IVGVLDTGIWPESASFN-DTGMTPVPAHWKGACETGRGFQKHHCNRKIVGARVFYRGYEAATGKINEQNEYKSPRDQDGH 219 (769)
Q Consensus 141 ~VgVIDtGid~~Hp~f~-~~~~~~~~~~w~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~D~~gH 219 (769)
+|||||||||++||+|. ++ ....++.+.+.|.++. .......|..+|
T Consensus 1 ~V~viDtGid~~h~~~~~~~----------------------~~~~~~~~~~~~~~~~----------~~~~~~~~~~~H 48 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN----------------------FIWSKVPGGYNFVDGN----------PNPSPSDDDNGH 48 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT----------------------EEEEEEEEEEETTTTB----------STTTSSSTSSSH
T ss_pred CEEEEcCCcCCCChhHccCC----------------------cccccccceeeccCCC----------CCcCccccCCCc
Confidence 69999999999999997 32 0122334445554432 112346678899
Q ss_pred hhhhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeCCCCCHHHHHHHHHHHH-hCCCcEEEeccCCCC--C-C
Q 044578 220 GTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSGGCFSSDILSAVDRAV-ADGVNVLSISLGGGV--S-S 295 (769)
Q Consensus 220 GThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~sdi~~ai~~a~-~~g~dVIn~SlG~~~--~-~ 295 (769)
||||||||+|.. . .+..+ +.|+||+|+|+.+|+++..+....+++++|++++ +.+++|||||||... . .
T Consensus 49 GT~va~ii~~~~-~-~~~~~-----~~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~ 121 (282)
T PF00082_consen 49 GTHVAGIIAGNG-G-NNGPG-----INGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDP 121 (282)
T ss_dssp HHHHHHHHHHTT-S-SSSSS-----ETCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHS
T ss_pred cchhhhhccccc-c-ccccc-----cccccccccccccccccccccccccccchhhhhhhccCCcccccccccccccccc
Confidence 999999999997 2 22222 3899999999999998777777888999999999 889999999998732 1 2
Q ss_pred CccchHHHHHHHHHhcCcEEEEecCCCCCCCC---cccCCCCceEEecCCCCCCceeeEEEeCCCcEEEEEEeccCCcCC
Q 044578 296 YHRDSLSIATFGAMEMGVFVSCSAGNGGPDPV---SLTNVSPWITTVGASTLDRDFPATVKLGTGRTITGVSLYKGRRAL 372 (769)
Q Consensus 296 ~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 372 (769)
...+.+..++..+.++|+++|+||||+|.... ..+...+++|+||+..
T Consensus 122 ~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~----------------------------- 172 (282)
T PF00082_consen 122 SYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVD----------------------------- 172 (282)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEE-----------------------------
T ss_pred ccccccccccccccccCcceeeccccccccccccccccccccccccccccc-----------------------------
Confidence 23344556666888999999999999987654 3555667888888622
Q ss_pred CCCccccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCCCCcccccccccc
Q 044578 373 LPNKQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAANGEELVADCHLL 452 (769)
Q Consensus 373 ~~~~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ 452 (769)
T Consensus 173 -------------------------------------------------------------------------------- 172 (282)
T PF00082_consen 173 -------------------------------------------------------------------------------- 172 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEChhhhHHHHHHHhcCCCceEEEEecceeecccCCCeeccccCCCCCCCCCCcccCeeeeCCCceeecccCCCCCC
Q 044578 453 PAVAVGEIEGKEIKQYASTSPKATASLALLGTRVGIKPSPVVAAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPS 532 (769)
Q Consensus 453 p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~ 532 (769)
..+.++.||++|+... ++++||||+|||.+|.++++....
T Consensus 173 -------------------------------------~~~~~~~~s~~g~~~~-~~~~~~di~a~G~~i~~~~~~~~~-- 212 (282)
T PF00082_consen 173 -------------------------------------NNGQPASYSNYGGPSD-DGRIKPDIAAPGGNILSAVPGSDR-- 212 (282)
T ss_dssp -------------------------------------TTSSBSTTSSBSTTET-TCTTCEEEEEECSSEEEEETTTES--
T ss_pred -------------------------------------cccccccccccccccc-cccccccccccccccccccccccc--
Confidence 1125688999976543 579999999999999888876421
Q ss_pred CCCCCccccceeeeccccchhhhhHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCCCCCCccc
Q 044578 533 SLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSPAAIKSALMTTAYVHDNTHNPLKDASSYEPSSPYDHGAGHI 612 (769)
Q Consensus 533 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G~v 612 (769)
..|..++|||||||+|||++||++|++|+|++.+||.+|++||.+....+ .......||||+|
T Consensus 213 --------~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~---------~~~~~~~~G~G~i 275 (282)
T PF00082_consen 213 --------GSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN---------GEGYDNSYGWGLI 275 (282)
T ss_dssp --------EEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT---------SSSSHHHHTTSBE
T ss_pred --------ccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC---------CCCCCCCccCChh
Confidence 25889999999999999999999999999999999999999999886211 1233458899999
Q ss_pred CccccCC
Q 044578 613 NPVKALD 619 (769)
Q Consensus 613 d~~~Al~ 619 (769)
|+.+|++
T Consensus 276 n~~~a~~ 282 (282)
T PF00082_consen 276 NAEKALN 282 (282)
T ss_dssp -HHHHHH
T ss_pred CHHHHhC
Confidence 9999874
No 33
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.8e-40 Score=339.10 Aligned_cols=155 Identities=21% Similarity=0.230 Sum_probs=117.1
Q ss_pred CCCcEEEEeccccCCCCCCcccCCCCCCCCccccccccCCCcccccCCceeEeeEecccchhhccCcccccCCCCCCCCC
Q 044578 137 DYDVIVGVLDTGIWPESASFNDTGMTPVPAHWKGACETGRGFQKHHCNRKIVGARVFYRGYEAATGKINEQNEYKSPRDQ 216 (769)
Q Consensus 137 G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~D~ 216 (769)
+++|+|||||||||++||+|.++ +...++|...... .........|.
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~---------------------------i~~~~~~~~~~~~------~~~~~~~~~d~ 48 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK---------------------------IIGGKSFSPYEGD------GNKVSPYYVSA 48 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc---------------------------cccCCCCCCCCCC------cccCCCCCCCC
Confidence 78999999999999999999753 1111122211000 00001123578
Q ss_pred CCChhhhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeCCC-------CCHHHHHHHHHHHHhCCCcEEEecc
Q 044578 217 DGHGTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSGG-------CFSSDILSAVDRAVADGVNVLSISL 289 (769)
Q Consensus 217 ~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-------~~~sdi~~ai~~a~~~g~dVIn~Sl 289 (769)
.|||||||||| .|+||+|+|+.+|+++..+ ++..++++||+||+++|+|||||||
T Consensus 49 ~gHGT~vAgiI------------------~gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~ 110 (247)
T cd07491 49 DGHGTAMARMI------------------CRICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSW 110 (247)
T ss_pred CCcHHHHHHHH------------------HHHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeee
Confidence 89999999999 3789999999999998654 3567899999999999999999999
Q ss_pred CCCCCCC---ccchHHHHHHHHHhcCcEEEEecCCCCCCCC---cccCCCCceEEecCC
Q 044578 290 GGGVSSY---HRDSLSIATFGAMEMGVFVSCSAGNGGPDPV---SLTNVSPWITTVGAS 342 (769)
Q Consensus 290 G~~~~~~---~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA~ 342 (769)
|...... ....+..++.+|.++|++||+||||+|.... ..+...|++|+|||.
T Consensus 111 g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~ 169 (247)
T cd07491 111 TIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAA 169 (247)
T ss_pred ecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEee
Confidence 9865322 2566778888999999999999999997754 334567899999984
No 34
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=8.5e-40 Score=350.14 Aligned_cols=248 Identities=22% Similarity=0.228 Sum_probs=180.0
Q ss_pred CCCccccCCCCCCcEEEEeccccCCCCCCcccCCCCCCCCccccccccCCCcccccCCceeEeeEecccchhhccCcccc
Q 044578 127 STSIWSQKVADYDVIVGVLDTGIWPESASFNDTGMTPVPAHWKGACETGRGFQKHHCNRKIVGARVFYRGYEAATGKINE 206 (769)
Q Consensus 127 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~ 206 (769)
...+|+.+++|+||+|+|||||||+.||+|.++... ...++|..+..
T Consensus 28 ~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~-------------------------~~~~~~~~~~~-------- 74 (297)
T cd04059 28 VTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP-------------------------EASYDFNDNDP-------- 74 (297)
T ss_pred cHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc-------------------------cccccccCCCC--------
Confidence 377999999999999999999999999999764110 01111221110
Q ss_pred cCCCCCC--CCCCCChhhhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeCCCCCHHHHHHHHHHHHhCCCcE
Q 044578 207 QNEYKSP--RDQDGHGTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSGGCFSSDILSAVDRAVADGVNV 284 (769)
Q Consensus 207 ~~~~~~~--~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~sdi~~ai~~a~~~g~dV 284 (769)
...+ .|..+|||||||||+|+..+.. | ..||||+|+|+.+|+++.. .....+..++.++.+ .++|
T Consensus 75 ---~~~~~~~~~~gHGT~vAgiiag~~~~~~---~-----~~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~V 141 (297)
T cd04059 75 ---DPTPRYDDDNSHGTRCAGEIAAVGNNGI---C-----GVGVAPGAKLGGIRMLDGD-VTDVVEAESLGLNPD-YIDI 141 (297)
T ss_pred ---CCCCccccccccCcceeeEEEeecCCCc---c-----cccccccceEeEEEecCCc-cccHHHHHHHhcccC-CceE
Confidence 0112 2788999999999999864431 1 3899999999999998765 334455566666554 4699
Q ss_pred EEeccCCCCCCC----ccchHHHHHHHHHh-----cCcEEEEecCCCCCCCCc----ccCCCCceEEecCCCCCCceeeE
Q 044578 285 LSISLGGGVSSY----HRDSLSIATFGAME-----MGVFVSCSAGNGGPDPVS----LTNVSPWITTVGASTLDRDFPAT 351 (769)
Q Consensus 285 In~SlG~~~~~~----~~~~~~~~~~~a~~-----~Gi~vV~AAGN~G~~~~~----~~~~~p~vitVgA~~~~~~~~~~ 351 (769)
||||||...... .......++.++.+ +|++||+||||+|..... .....|++|+|||.+.
T Consensus 142 in~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~------- 214 (297)
T cd04059 142 YSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTA------- 214 (297)
T ss_pred EECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCC-------
Confidence 999999765321 12233334444443 699999999999973221 1234678888887321
Q ss_pred EEeCCCcEEEEEEeccCCcCCCCCccccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCce
Q 044578 352 VKLGTGRTITGVSLYKGRRALLPNKQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGI 431 (769)
Q Consensus 352 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~ 431 (769)
T Consensus 215 -------------------------------------------------------------------------------- 214 (297)
T cd04059 215 -------------------------------------------------------------------------------- 214 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCCCCccccccccccceEEEChhhhHHHHHHHhcCCCceEEEEecceeecccCCCeeccccCCCCCCCCCCccc
Q 044578 432 GVILANTAANGEELVADCHLLPAVAVGEIEGKEIKQYASTSPKATASLALLGTRVGIKPSPVVAAFSSRGPNFLTLEILK 511 (769)
Q Consensus 432 g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lK 511 (769)
.+.++.||++|+..
T Consensus 215 -----------------------------------------------------------~g~~~~~s~~g~~~------- 228 (297)
T cd04059 215 -----------------------------------------------------------NGVRASYSEVGSSV------- 228 (297)
T ss_pred -----------------------------------------------------------CCCCcCCCCCCCcE-------
Confidence 22667899999987
Q ss_pred CeeeeCCCc-------eeecccCCCCCCCCCCCccccceeeeccccchhhhhHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044578 512 PDIVAPGVN-------ILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSPAAIKSALMTTAY 584 (769)
Q Consensus 512 PDI~APG~~-------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 584 (769)
+++|||.. |+++..... ...|..++|||||||+|||++|||+|+||+|++.|||.+|++||+
T Consensus 229 -~~~a~g~~~~~~~~~i~~~~~~~~----------~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 229 -LASAPSGGSGNPEASIVTTDLGGN----------CNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred -EEEecCCCCCCCCCceEeCCCCCC----------CCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 89999987 666654420 126789999999999999999999999999999999999999985
No 35
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.8e-39 Score=328.17 Aligned_cols=221 Identities=25% Similarity=0.291 Sum_probs=171.8
Q ss_pred CcEEEEeccccCCCCCCcccCCCCCCCCccccccccCCCcccccCCceeEeeEecccchhhccCcccccCCCCCCCCCCC
Q 044578 139 DVIVGVLDTGIWPESASFNDTGMTPVPAHWKGACETGRGFQKHHCNRKIVGARVFYRGYEAATGKINEQNEYKSPRDQDG 218 (769)
Q Consensus 139 Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 218 (769)
||+|||||||||++||+|.+.-.. + +.+..+. .........|..|
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~------------~---------------~~~~~~~--------~~~~~~~~~d~~g 45 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD------------G---------------EVTIDLE--------IIVVSAEGGDKDG 45 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc------------c---------------ccccccc--------cccCCCCCCCCCC
Confidence 799999999999999999764110 0 0010000 0001123567889
Q ss_pred ChhhhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeCCC-CCHHHHHHHHHHHHhCCCcEEEeccCCCCCCCc
Q 044578 219 HGTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSGG-CFSSDILSAVDRAVADGVNVLSISLGGGVSSYH 297 (769)
Q Consensus 219 HGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~sdi~~ai~~a~~~g~dVIn~SlG~~~~~~~ 297 (769)
|||||||||++ .+|+++|+.+|+++..+ +...++++||+|+++++++|||||||..... .
T Consensus 46 HGT~vAgiia~------------------~~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~-~ 106 (222)
T cd07492 46 HGTACAGIIKK------------------YAPEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGDR-D 106 (222)
T ss_pred cHHHHHHHHHc------------------cCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC-c
Confidence 99999999964 35999999999998876 7888899999999999999999999986532 2
Q ss_pred cchHHHHHHHHHhcCcEEEEecCCCCCCCCcccCCCCceEEecCCCCCCceeeEEEeCCCcEEEEEEeccCCcCCCCCcc
Q 044578 298 RDSLSIATFGAMEMGVFVSCSAGNGGPDPVSLTNVSPWITTVGASTLDRDFPATVKLGTGRTITGVSLYKGRRALLPNKQ 377 (769)
Q Consensus 298 ~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 377 (769)
...+..++.++.++|+++|+||||++.... .+...+++|+|++...+.
T Consensus 107 ~~~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~------------------------------- 154 (222)
T cd07492 107 FPLLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD------------------------------- 154 (222)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCC-------------------------------
Confidence 345666777888899999999999986543 367778899998732110
Q ss_pred ccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCCCCccccccccccceEEE
Q 044578 378 YPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAANGEELVADCHLLPAVAV 457 (769)
Q Consensus 378 ~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i 457 (769)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ChhhhHHHHHHHhcCCCceEEEEecceeecccCCCeeccccCCCCCCCCCCcccCeeeeCCCceeecccCCCCCCCCCCC
Q 044578 458 GEIEGKEIKQYASTSPKATASLALLGTRVGIKPSPVVAAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGETGPSSLPAD 537 (769)
Q Consensus 458 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~ 537 (769)
.. +.+++ ++|++|||.+|+++.+..
T Consensus 155 -----------------------------------~~---~~~~~--------~~~~~apg~~i~~~~~~~--------- 179 (222)
T cd07492 155 -----------------------------------PK---SFWYI--------YVEFSADGVDIIAPAPHG--------- 179 (222)
T ss_pred -----------------------------------Cc---ccccC--------CceEEeCCCCeEeecCCC---------
Confidence 01 11133 349999999999987764
Q ss_pred ccccceeeeccccchhhhhHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044578 538 HRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSPAAIKSALMTTAY 584 (769)
Q Consensus 538 ~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 584 (769)
.|..++|||||||+|||++|||+|++|+|+++|||++|++||+
T Consensus 180 ----~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 180 ----RYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred ----CEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 7999999999999999999999999999999999999999985
No 36
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=9.4e-38 Score=328.96 Aligned_cols=242 Identities=29% Similarity=0.355 Sum_probs=184.4
Q ss_pred CCCCcEEEEeccccCCCCCCcccCCCCCCCCccccccccCCCcccccCCceeEeeEecccchhhccCcccccCCCCCCCC
Q 044578 136 ADYDVIVGVLDTGIWPESASFNDTGMTPVPAHWKGACETGRGFQKHHCNRKIVGARVFYRGYEAATGKINEQNEYKSPRD 215 (769)
Q Consensus 136 ~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~D 215 (769)
+|+||+|+|||+||+++||+|.+...... .+.... ........|
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~---------------------------~~~~~~---------~~~~~~~~~ 44 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEAS---------------------------YYVAVN---------DAGYASNGD 44 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccccc---------------------------cccccc---------cccCCCCCC
Confidence 69999999999999999999986521100 000000 000123557
Q ss_pred CCCChhhhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeCCC--CCHHHHHHHHHHHHhCCCcEEEeccCCCC
Q 044578 216 QDGHGTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSGG--CFSSDILSAVDRAVADGVNVLSISLGGGV 293 (769)
Q Consensus 216 ~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g--~~~sdi~~ai~~a~~~g~dVIn~SlG~~~ 293 (769)
..+|||||||+|+|+..+ ..+.|+||+|+|+.+|+++..+ .....+.++++++++.+++|||||||...
T Consensus 45 ~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~ 115 (267)
T cd04848 45 GDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNP 115 (267)
T ss_pred CCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCC
Confidence 889999999999998644 2248999999999999998764 56677889999999999999999999865
Q ss_pred CCC------------ccchHHHHHHHHHhcCcEEEEecCCCCCCCCcc---------cCCCCceEEecCCCCCCceeeEE
Q 044578 294 SSY------------HRDSLSIATFGAMEMGVFVSCSAGNGGPDPVSL---------TNVSPWITTVGASTLDRDFPATV 352 (769)
Q Consensus 294 ~~~------------~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~---------~~~~p~vitVgA~~~~~~~~~~~ 352 (769)
... ....+...+..+.++|+++|+||||++...... +...+++|+||+.+.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~------- 188 (267)
T cd04848 116 AIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPN------- 188 (267)
T ss_pred cccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCC-------
Confidence 221 345566677788899999999999998654332 2345678888874321
Q ss_pred EeCCCcEEEEEEeccCCcCCCCCccccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceE
Q 044578 353 KLGTGRTITGVSLYKGRRALLPNKQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIG 432 (769)
Q Consensus 353 ~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g 432 (769)
T Consensus 189 -------------------------------------------------------------------------------- 188 (267)
T cd04848 189 -------------------------------------------------------------------------------- 188 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCCCCccccccccccceEEEChhhhHHHHHHHhcCCCceEEEEecceeecccCCCeecc--ccCCCCCCCCCCcc
Q 044578 433 VILANTAANGEELVADCHLLPAVAVGEIEGKEIKQYASTSPKATASLALLGTRVGIKPSPVVAA--FSSRGPNFLTLEIL 510 (769)
Q Consensus 433 ~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~--fSS~GP~~~~~~~l 510 (769)
+.... ||++|+.. .
T Consensus 189 -----------------------------------------------------------~~~~~~~~s~~~~~~-----~ 204 (267)
T cd04848 189 -----------------------------------------------------------GTIASYSYSNRCGVA-----A 204 (267)
T ss_pred -----------------------------------------------------------CCcccccccccchhh-----h
Confidence 12233 48888644 2
Q ss_pred cCeeeeCCCceeecccCCCCCCCCCCCccccceeeeccccchhhhhHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044578 511 KPDIVAPGVNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSPAAIKSALMTTAY 584 (769)
Q Consensus 511 KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~TA~ 584 (769)
.++++|||.+|.++.+... ..|..++|||||||+|||++||++|++|.|++++||++|++||+
T Consensus 205 ~~~~~apG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 205 NWCLAAPGENIYSTDPDGG-----------NGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred hheeecCcCceeecccCCC-----------CcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 4479999999999877311 27889999999999999999999999999999999999999985
No 37
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-37 Score=324.11 Aligned_cols=363 Identities=25% Similarity=0.355 Sum_probs=264.8
Q ss_pred CCCeEEEEeCCCCCCCcccchHHHHHHHhhcccc----cCCCccEEEEecceeeEEEEEcC-----HHHHHHHhcCCCee
Q 044578 31 TKKTYIVQMDKSAMPESFSDHAEWFSSTVKSVAY----KNDEDRIIYSYQTAFHGVAARLS-----EEEAERLEQEDGVM 101 (769)
Q Consensus 31 ~~~~yIV~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~v~~~y~~~~~g~~~~~~-----~~~l~~L~~~p~V~ 101 (769)
.+.+|||.|+..... ..++..+++.++.-.- .-.....-..|...|.-+-++-. .-++++|..+|.|+
T Consensus 48 ve~EyIv~F~~y~~A---k~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~vk 124 (1033)
T KOG4266|consen 48 VESEYIVRFKQYKPA---KDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPDVK 124 (1033)
T ss_pred ecceeEEEecccccc---hHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcCCCce
Confidence 357899999987643 3456666666553221 01123334556666666555443 23488999999999
Q ss_pred EEEeCeeeccccC------------CCCcccCc----------------CC------------CCCCCccccCCCCCCcE
Q 044578 102 AIFPETKYELHTT------------RSPLFLGL----------------EP------------ADSTSIWSQKVADYDVI 141 (769)
Q Consensus 102 ~v~~~~~~~~~~~------------~s~~~~g~----------------~~------------~~~~~~~~~~~~G~Gv~ 141 (769)
.+.|.+.+..-.. ....++.- .+ ..++.+|+.|++|++|+
T Consensus 125 ~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyTGa~Vk 204 (1033)
T KOG4266|consen 125 VVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGYTGAKVK 204 (1033)
T ss_pred eecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccccCCceE
Confidence 9998876543100 00000000 00 01266999999999999
Q ss_pred EEEeccccCCCCCCcccCCCCCCCCccccccccCCCcccccCCceeEeeEecccchhhccCcccccCCCCCCCCCCCChh
Q 044578 142 VGVLDTGIWPESASFNDTGMTPVPAHWKGACETGRGFQKHHCNRKIVGARVFYRGYEAATGKINEQNEYKSPRDQDGHGT 221 (769)
Q Consensus 142 VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGT 221 (769)
|||.|||+.-.||-|+.- |.+. ++.+ ...-.|..||||
T Consensus 205 vAiFDTGl~~~HPHFrnv---------KERT-------------------NWTN--------------E~tLdD~lgHGT 242 (1033)
T KOG4266|consen 205 VAIFDTGLRADHPHFRNV---------KERT-------------------NWTN--------------EDTLDDNLGHGT 242 (1033)
T ss_pred EEEeecccccCCccccch---------hhhc-------------------CCcC--------------ccccccCcccce
Confidence 999999999999999732 0000 0111 113557889999
Q ss_pred hhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeCCC-CCHHHHHHHHHHHHhCCCcEEEeccCCCCCCCccch
Q 044578 222 HTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSGG-CFSSDILSAVDRAVADGVNVLSISLGGGVSSYHRDS 300 (769)
Q Consensus 222 hVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~sdi~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~ 300 (769)
.|||+|||... ..|.||+++|++.|||-+.. .+.+.+++|++||+...+||+|+|+|++ .+.+.+
T Consensus 243 FVAGvia~~~e------------c~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGP--DfmD~P 308 (1033)
T KOG4266|consen 243 FVAGVIAGRNE------------CLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGP--DFMDLP 308 (1033)
T ss_pred eEeeeeccchh------------hcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCc--ccccch
Confidence 99999999852 27999999999999998776 8899999999999999999999999996 455566
Q ss_pred HHHHHHHHHhcCcEEEEecCCCCCCCCcccCCCC--ceEEecCCCCCCceeeEEEeCCCcEEEEEEeccCCcCCCCCccc
Q 044578 301 LSIATFGAMEMGVFVSCSAGNGGPDPVSLTNVSP--WITTVGASTLDRDFPATVKLGTGRTITGVSLYKGRRALLPNKQY 378 (769)
Q Consensus 301 ~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p--~vitVgA~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 378 (769)
+-.-+.......|++|.|+||+|+-..+..+.+. .||.||.
T Consensus 309 FVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGG------------------------------------- 351 (1033)
T KOG4266|consen 309 FVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGG------------------------------------- 351 (1033)
T ss_pred HHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeecc-------------------------------------
Confidence 6666667888999999999999998877666432 4555542
Q ss_pred cEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCCCCccccccccccceEEEC
Q 044578 379 PVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAANGEELVADCHLLPAVAVG 458 (769)
Q Consensus 379 ~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~ 458 (769)
T Consensus 352 -------------------------------------------------------------------------------- 351 (1033)
T KOG4266|consen 352 -------------------------------------------------------------------------------- 351 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhHHHHHHHhcCCCceEEEEecceeecccCCCeeccccCCCCCCC----CCCcccCeeeeCCCceeecccCCCCCCCC
Q 044578 459 EIEGKEIKQYASTSPKATASLALLGTRVGIKPSPVVAAFSSRGPNFL----TLEILKPDIVAPGVNILAAWSGETGPSSL 534 (769)
Q Consensus 459 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~GP~~~----~~~~lKPDI~APG~~I~sa~~~~~~~~~~ 534 (769)
....+.+|.|||||-+.. .-||+||||++.|.+|.......
T Consensus 352 -----------------------------IdfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~~------ 396 (1033)
T KOG4266|consen 352 -----------------------------IDFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVST------ 396 (1033)
T ss_pred -----------------------------ccccchhhhhccCCcceeecCCcccccCCceEeeccccccCcccc------
Confidence 122348899999996542 24899999999999998765443
Q ss_pred CCCccccceeeeccccchhhhhHHHHHHHHh----hCCCCCHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCCCCCCc
Q 044578 535 PADHRRVKFNILSGTSMSCPHVSGIAALLKA----RHPEWSPAAIKSALMTTAYVHDNTHNPLKDASSYEPSSPYDHGAG 610 (769)
Q Consensus 535 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~G~G 610 (769)
+...+||||.|+|.|||+++||.+ +.--+.|+.+|++|+..|.+++.. .-+.||+|
T Consensus 397 -------GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~-------------NMfEQGaG 456 (1033)
T KOG4266|consen 397 -------GCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGP-------------NMFEQGAG 456 (1033)
T ss_pred -------cchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCC-------------chhhccCc
Confidence 678899999999999999999976 233468999999999999998643 23699999
Q ss_pred ccCccccCCCCcee
Q 044578 611 HINPVKALDPGLIY 624 (769)
Q Consensus 611 ~vd~~~Al~~~lv~ 624 (769)
++|+.++.+--+-|
T Consensus 457 kldLL~syqiL~SY 470 (1033)
T KOG4266|consen 457 KLDLLESYQILKSY 470 (1033)
T ss_pred chhHHHHHHHHHhc
Confidence 99999998743333
No 38
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-33 Score=307.97 Aligned_cols=355 Identities=21% Similarity=0.260 Sum_probs=232.4
Q ss_pred CCCChhhhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeCC-C--CCHHHHHHHHHHHHhCCCcEEEeccCCC
Q 044578 216 QDGHGTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSG-G--CFSSDILSAVDRAVADGVNVLSISLGGG 292 (769)
Q Consensus 216 ~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g--~~~sdi~~ai~~a~~~g~dVIn~SlG~~ 292 (769)
...|||||||||+|+...... ..|+||+|+|+++++.+.. | -+...+.+|+..++++.+||||||+|-.
T Consensus 309 Sg~HGTHVAgIa~anhpe~p~--------~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPETPE--------LNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCCcceehhhhccCCCCCcc--------ccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 456999999999999765432 3799999999999997754 3 4556789999999999999999999975
Q ss_pred C-CCCccchHHHHHHHHHhcCcEEEEecCCCCCCCCcccC---CCCceEEecCCCCCCceeeEEEeCCCcEEEEEEeccC
Q 044578 293 V-SSYHRDSLSIATFGAMEMGVFVSCSAGNGGPDPVSLTN---VSPWITTVGASTLDRDFPATVKLGTGRTITGVSLYKG 368 (769)
Q Consensus 293 ~-~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~---~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~~~~~ 368 (769)
. -+.....+...-..+.++|+++|++|||+||...+++. ....+|.|||-.....
T Consensus 381 a~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~m--------------------- 439 (1304)
T KOG1114|consen 381 AHLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGM--------------------- 439 (1304)
T ss_pred CCCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHH---------------------
Confidence 5 33344455544444558999999999999999877664 3457888887221100
Q ss_pred CcCCCCCccccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCCCCcccccc
Q 044578 369 RRALLPNKQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAANGEELVAD 448 (769)
Q Consensus 369 ~~~~~~~~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~ 448 (769)
. ...|.+.
T Consensus 440 -m----~a~y~~~------------------------------------------------------------------- 447 (1304)
T KOG1114|consen 440 -M----QAEYSVR------------------------------------------------------------------- 447 (1304)
T ss_pred -H----Hhhhhhh-------------------------------------------------------------------
Confidence 0 0000000
Q ss_pred ccccceEEEChhhhHHHHHHHhcCCCceEEEEecceeecccCCCeeccccCCCCCCCCCCcccCeeeeCCCceeecccCC
Q 044578 449 CHLLPAVAVGEIEGKEIKQYASTSPKATASLALLGTRVGIKPSPVVAAFSSRGPNFLTLEILKPDIVAPGVNILAAWSGE 528 (769)
Q Consensus 449 ~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~ 528 (769)
..-...+-.||||||+. ||.+--.|+|||+-|.+- |..
T Consensus 448 ---------------------------------------e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsV-P~~ 485 (1304)
T KOG1114|consen 448 ---------------------------------------EPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASV-PQY 485 (1304)
T ss_pred ---------------------------------------ccCCCCccccccCCCCc--CCCcceEEecCCccccCC-chh
Confidence 00112467799999999 689999999999998764 221
Q ss_pred CCCCCCCCCccccceeeeccccchhhhhHHHHHHHHh----hCCCCCHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCC
Q 044578 529 TGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKA----RHPEWSPAAIKSALMTTAYVHDNTHNPLKDASSYEPSSP 604 (769)
Q Consensus 529 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~ 604 (769)
.- ..-..|.|||||+|+++|.+|||++ .+-.+||..||.+|++||+++++. .+
T Consensus 486 tl----------q~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i-------------d~ 542 (1304)
T KOG1114|consen 486 TL----------QNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI-------------DS 542 (1304)
T ss_pred hh----------hhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc-------------ch
Confidence 00 1457899999999999999999865 477899999999999999998542 45
Q ss_pred CCCCCcccCccccCCCCceeccCccchhhhcccCCCCccceeeeeccccccccCC--CCCCCCCCcCceeeeccCCCcce
Q 044578 605 YDHGAGHINPVKALDPGLIYDINAQDYFDFLCSQKLTPMELQVFRKYANRTCRHS--IAKPGDLNYPAISVVFPETANVS 682 (769)
Q Consensus 605 ~~~G~G~vd~~~Al~~~lv~d~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ln~ps~~~~~~~~~~~~ 682 (769)
+.||.|+|++.+|.+--.-.+.....-+.| |...-.-+|+.- ..++-..+-|
T Consensus 543 faqG~GmlqVdkAyEyL~q~~~~f~~~l~f-------------~~v~VgN~~srGIyLRep~~~~~p------------- 596 (1304)
T KOG1114|consen 543 FAQGQGMLQVDKAYEYLAQSDFSFPNALGF-------------INVNVGNSCSRGIYLREPTQVCSP------------- 596 (1304)
T ss_pred hccCcceeehhHHHHHHHHhhhcCCcccee-------------EEEeeccccccceEecCCcccCCc-------------
Confidence 799999999999987211111111111222 111112223210 0011111111
Q ss_pred eEEEEEEEE----EeCC---CCeeEEEEEeCCCCcEEEEecCeEEEeecCeeEEEEEEEEeeCCCCCcEEEEEEEEc---
Q 044578 683 ALTLRRTVT----NVGP---PVSNYHVVVSPFKGVAIKVEPQKLHFTKKYQKLSYKITFTTKSPETIPEFGGLIWKD--- 752 (769)
Q Consensus 683 ~~~~~~tv~----n~~~---~~~ty~~~v~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~G~~~~~~--- 752 (769)
..+++.|. |--+ .-..|.+...-...-.+---|+.+.+ .++.+.+.|+|++.....+..++.|.=-|
T Consensus 597 -~e~~i~VePiF~~~~e~~keki~Fe~~L~L~st~pwVq~p~~l~l--~~~~R~i~VrVDpt~l~~G~hy~eV~gyD~~~ 673 (1304)
T KOG1114|consen 597 -SEHTIGVEPIFENGEENEKEKISFEVQLSLASTQPWVQCPEYLML--ANQGRGINVRVDPTGLAPGVHYTEVLGYDTAN 673 (1304)
T ss_pred -cccceeccccccCccccccccccceeeEeeecCCcceeCchhhee--ccCCceeEEEECCcCCCCCcceEEEEEeecCC
Confidence 11222111 1100 01112222211111123335887777 58899999999999888888888888653
Q ss_pred --CceeEEeEEEEEe
Q 044578 753 --GVHKVRSPIVITR 765 (769)
Q Consensus 753 --~~~~v~~P~~~~~ 765 (769)
.++.+|+|+.|.-
T Consensus 674 p~~gplFrIPVTVi~ 688 (1304)
T KOG1114|consen 674 PSRGPLFRIPVTVIK 688 (1304)
T ss_pred cccCceEEeeeEEEc
Confidence 6999999998763
No 39
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2e-33 Score=289.27 Aligned_cols=194 Identities=24% Similarity=0.224 Sum_probs=141.4
Q ss_pred CCCCCCChhhhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeCCCCCHHHHHHHHHHH--HhCCCcEEEeccC
Q 044578 213 PRDQDGHGTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSGGCFSSDILSAVDRA--VADGVNVLSISLG 290 (769)
Q Consensus 213 ~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~sdi~~ai~~a--~~~g~dVIn~SlG 290 (769)
..|+.+|||||||||||. .|++|+++|+..++.. ...+.+..+++|+ .+.+++|||||||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~---~~~~~~~~~i~~~~~~~~gv~VINmS~G 94 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI---KSNNGQWQECLEAQQNGNNVKIINHSYG 94 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC---CCCCccHHHHHHHHHhcCCceEEEeCCc
Confidence 557899999999999997 4677999998766522 2233466778888 5679999999999
Q ss_pred CCCCCC------ccchHHHHHHHHHhc-CcEEEEecCCCCCCC-----CcccCCCCceEEecCCCCCCceeeEEEeCCCc
Q 044578 291 GGVSSY------HRDSLSIATFGAMEM-GVFVSCSAGNGGPDP-----VSLTNVSPWITTVGASTLDRDFPATVKLGTGR 358 (769)
Q Consensus 291 ~~~~~~------~~~~~~~~~~~a~~~-Gi~vV~AAGN~G~~~-----~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~ 358 (769)
+..... ..+.+..++..+.++ |+++|+||||+|... ...+..++++|+|||.+....
T Consensus 95 ~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~----------- 163 (247)
T cd07488 95 EGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD----------- 163 (247)
T ss_pred cCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC-----------
Confidence 865332 223455666666665 999999999999753 233556788999998432110
Q ss_pred EEEEEEeccCCcCCCCCccccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecC
Q 044578 359 TITGVSLYKGRRALLPNKQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANT 438 (769)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~ 438 (769)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccccccccceEEEChhhhHHHHHHHhcCCCceEEEEecceeecccCCCeeccccCCCCCCCCCCcccCeeeeCC
Q 044578 439 AANGEELVADCHLLPAVAVGEIEGKEIKQYASTSPKATASLALLGTRVGIKPSPVVAAFSSRGPNFLTLEILKPDIVAPG 518 (769)
Q Consensus 439 ~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG 518 (769)
....+.||++|-....++..||||+|||
T Consensus 164 ----------------------------------------------------~~~~s~~sn~~~~~~~~~~~~~di~APG 191 (247)
T cd07488 164 ----------------------------------------------------RFFASDVSNAGSEINSYGRRKVLIVAPG 191 (247)
T ss_pred ----------------------------------------------------cceecccccccCCCCCCCCceeEEEEee
Confidence 0023456665432223578999999999
Q ss_pred CceeecccCCCCCCCCCCCccccceeeeccccchhhhhHHHHHHHHhhCCCCCH------HHHHHHHHhc
Q 044578 519 VNILAAWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSP------AAIKSALMTT 582 (769)
Q Consensus 519 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp------~~ik~~L~~T 582 (769)
++|++ +.+ .|..++|||||||||||++|||++++|++.+ .++|.+|++|
T Consensus 192 ~~i~s--~~~-------------~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 192 SNYNL--PDG-------------KDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred eeEEC--CCC-------------ceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 99998 222 6889999999999999999999999887764 4566666665
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.98 E-value=8.1e-31 Score=270.73 Aligned_cols=195 Identities=41% Similarity=0.570 Sum_probs=157.1
Q ss_pred CCCCCCChhhhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeCCC-CCHHHHHHHHHHHH-hCCCcEEEeccC
Q 044578 213 PRDQDGHGTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSGG-CFSSDILSAVDRAV-ADGVNVLSISLG 290 (769)
Q Consensus 213 ~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g-~~~sdi~~ai~~a~-~~g~dVIn~SlG 290 (769)
..+..+||||||++|++...+.. ..|+||+++|+.+|+....+ .....+++++++++ +.+++|||||||
T Consensus 40 ~~~~~~HGt~va~~i~~~~~~~~---------~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g 110 (241)
T cd00306 40 PDDGNGHGTHVAGIIAASANNGG---------GVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSLG 110 (241)
T ss_pred CCCCCCcHHHHHHHHhcCCCCCC---------CEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCCC
Confidence 56788999999999999864432 17999999999999988766 67788999999999 899999999999
Q ss_pred CCCCCCccchHHHHHHHHHhc-CcEEEEecCCCCCCCC---cccCCCCceEEecCCCCCCceeeEEEeCCCcEEEEEEec
Q 044578 291 GGVSSYHRDSLSIATFGAMEM-GVFVSCSAGNGGPDPV---SLTNVSPWITTVGASTLDRDFPATVKLGTGRTITGVSLY 366 (769)
Q Consensus 291 ~~~~~~~~~~~~~~~~~a~~~-Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~~~ 366 (769)
..... ....+...+.++.++ |+++|+|+||.+.... ..+...+++|+||+.+.+.
T Consensus 111 ~~~~~-~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~-------------------- 169 (241)
T cd00306 111 GPGSP-PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG-------------------- 169 (241)
T ss_pred CCCCC-CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC--------------------
Confidence 86543 334556666677777 9999999999998776 4777889999999843221
Q ss_pred cCCcCCCCCccccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCCCCcccc
Q 044578 367 KGRRALLPNKQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAANGEELV 446 (769)
Q Consensus 367 ~~~~~~~~~~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~ 446 (769)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccceEEEChhhhHHHHHHHhcCCCceEEEEecceeecccCCCeec-cccCCCCCCCCCCcccCeeeeCCCceeecc
Q 044578 447 ADCHLLPAVAVGEIEGKEIKQYASTSPKATASLALLGTRVGIKPSPVVA-AFSSRGPNFLTLEILKPDIVAPGVNILAAW 525 (769)
Q Consensus 447 ~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-~fSS~GP~~~~~~~lKPDI~APG~~I~sa~ 525 (769)
... .++++| .|||+.|||.++....
T Consensus 170 ----------------------------------------------~~~~~~~~~~--------~~~~~~apg~~~~~~~ 195 (241)
T cd00306 170 ----------------------------------------------TPASPSSNGG--------AGVDIAAPGGDILSSP 195 (241)
T ss_pred ----------------------------------------------CccCCcCCCC--------CCceEEeCcCCccCcc
Confidence 111 344444 4669999999998751
Q ss_pred cCCCCCCCCCCCccccceeeeccccchhhhhHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 044578 526 SGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHPEWSPAAIKSALMTT 582 (769)
Q Consensus 526 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~L~~T 582 (769)
... ...+..++|||||||+|||++||++|++|++++.++|++|++|
T Consensus 196 ~~~-----------~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 196 TTG-----------GGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred cCC-----------CCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 111 1379999999999999999999999999999999999999875
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.1e-23 Score=241.57 Aligned_cols=250 Identities=34% Similarity=0.502 Sum_probs=185.4
Q ss_pred CCcccc--CCCCCCcEEEEeccccCCCCCCcccCCCCCCCCccccccccCCCcccccCCceeEeeEecccchhhccCccc
Q 044578 128 TSIWSQ--KVADYDVIVGVLDTGIWPESASFNDTGMTPVPAHWKGACETGRGFQKHHCNRKIVGARVFYRGYEAATGKIN 205 (769)
Q Consensus 128 ~~~~~~--~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~ 205 (769)
...|.. +.+|+|++|+|||+||+..||+|.+.... .++|.+..
T Consensus 130 ~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~---------------------------~~~~~~~~-------- 174 (508)
T COG1404 130 GALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVA---------------------------GGDFVDGD-------- 174 (508)
T ss_pred ccccccccCCCCCCeEEEEeccCCCCCChhhhccccc---------------------------ccccccCC--------
Confidence 567777 89999999999999999999999764110 01122111
Q ss_pred ccCCCCCCCCCCCChhhhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeCC-C-CCHHHHHHHHHHHHhCC--
Q 044578 206 EQNEYKSPRDQDGHGTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSG-G-CFSSDILSAVDRAVADG-- 281 (769)
Q Consensus 206 ~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g-~~~sdi~~ai~~a~~~g-- 281 (769)
......|..+|||||+|++++....+ .....|+||+++++.+|++... | ....+++.+|+++++.+
T Consensus 175 ---~~~~~~d~~~hGt~vag~ia~~~~~~-------~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~ 244 (508)
T COG1404 175 ---PEPPFLDDNGHGTHVAGTIAAVIFDN-------GAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGP 244 (508)
T ss_pred ---CCCCCCCCCCCcceeeeeeeeecccC-------CCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCC
Confidence 00024688999999999999842111 1114899999999999999866 5 67778899999999999
Q ss_pred CcEEEeccCCCCCCCccchHHHHHHHHHhcC-cEEEEecCCCCCCCC----cccCCC--CceEEecCCCCCCceeeEEEe
Q 044578 282 VNVLSISLGGGVSSYHRDSLSIATFGAMEMG-VFVSCSAGNGGPDPV----SLTNVS--PWITTVGASTLDRDFPATVKL 354 (769)
Q Consensus 282 ~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~G-i~vV~AAGN~G~~~~----~~~~~~--p~vitVgA~~~~~~~~~~~~~ 354 (769)
+++||||+|..........+..++..++..| +++|+|+||.|.... ..+... +.+++|+|..
T Consensus 245 ~~~in~s~g~~~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~----------- 313 (508)
T COG1404 245 ADVINLSLGGSLSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALD----------- 313 (508)
T ss_pred CcEEEecCCCCccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCC-----------
Confidence 9999999998522223344555555777776 999999999987652 122222 2555555421
Q ss_pred CCCcEEEEEEeccCCcCCCCCccccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEE
Q 044578 355 GTGRTITGVSLYKGRRALLPNKQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVI 434 (769)
Q Consensus 355 ~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i 434 (769)
T Consensus 314 -------------------------------------------------------------------------------- 313 (508)
T COG1404 314 -------------------------------------------------------------------------------- 313 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCCccccccccccceEEEChhhhHHHHHHHhcCCCceEEEEecceeecccCCCeeccccCCCCCCCCCCcccCee
Q 044578 435 LANTAANGEELVADCHLLPAVAVGEIEGKEIKQYASTSPKATASLALLGTRVGIKPSPVVAAFSSRGPNFLTLEILKPDI 514 (769)
Q Consensus 435 ~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI 514 (769)
..+.++.||++|+.. ..++
T Consensus 314 -------------------------------------------------------~~~~~~~~s~~g~~~------~~~~ 332 (508)
T COG1404 314 -------------------------------------------------------LSDTVASFSNDGSPT------GVDI 332 (508)
T ss_pred -------------------------------------------------------CCCccccccccCCCC------Ccce
Confidence 013678899999752 2299
Q ss_pred eeCCCceee-----cccCCCCCCCCCCCccccceeeeccccchhhhhHHHHHHHHhhCC-CCCHHHHHHHHHhcccc
Q 044578 515 VAPGVNILA-----AWSGETGPSSLPADHRRVKFNILSGTSMSCPHVSGIAALLKARHP-EWSPAAIKSALMTTAYV 585 (769)
Q Consensus 515 ~APG~~I~s-----a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p-~lsp~~ik~~L~~TA~~ 585 (769)
+|||.+|.+ +++... ..|..++||||++|||+|++||+++.+| .+++.+++..+..++..
T Consensus 333 ~apg~~i~~~~~~~~~~~~~-----------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~ 398 (508)
T COG1404 333 AAPGVNILSLSAVNTLPGDG-----------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGL 398 (508)
T ss_pred eCCCccccccccceeeeCCc-----------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhcccc
Confidence 999999998 444431 1499999999999999999999999999 89999999998888873
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.8e-23 Score=212.04 Aligned_cols=275 Identities=14% Similarity=0.195 Sum_probs=151.9
Q ss_pred CCCCchhHHHHHHHHHHHHHHhcccccccCCCCeEEEEeCCCCCCCcccchHHHHHHHhhcccccCCCccEEEEecceee
Q 044578 1 MGENPVVKWVFFVLANCLAFSIGFSADVESTKKTYIVQMDKSAMPESFSDHAEWFSSTVKSVAYKNDEDRIIYSYQTAFH 80 (769)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yIV~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~y~~~~~ 80 (769)
|..+.... ++..++++++..+++.++...-...|+|.|+++...+.. + .+..-..-.. ......--++|+-.-+
T Consensus 1 m~~~t~s~-l~a~fl~lf~~~~gag~~~~vftnhflv~l~~g~g~~~a---h-~va~~hgf~n-rg~~~a~d~eyhf~h~ 74 (629)
T KOG3526|consen 1 MMKNTHSD-LIAVFLSLFCVMIGAGEAVDVFTNHFLVHLKEGGGLEDA---H-RVAKRHGFIN-RGQVAASDNEYHFVHP 74 (629)
T ss_pred CCcchHHH-HHHHHHHHHHHHhccccCcceeeeeEEEEEeccCChHHH---H-HHHHHhCccc-cccccccCceeeeecc
Confidence 44444333 333344444555666666666788999999998654311 1 1111000000 0001111133332223
Q ss_pred EEEEE---cCHHHHHHHhcCCCeeEEEeCeeecc-------c--------cCCCCcccCcCCCC-----------CCCcc
Q 044578 81 GVAAR---LSEEEAERLEQEDGVMAIFPETKYEL-------H--------TTRSPLFLGLEPAD-----------STSIW 131 (769)
Q Consensus 81 g~~~~---~~~~~l~~L~~~p~V~~v~~~~~~~~-------~--------~~~s~~~~g~~~~~-----------~~~~~ 131 (769)
++.-- -+...-++|.++|.|+.+....-+.. . ...-..+|-+.+.. ...+|
T Consensus 75 ~l~har~rrsl~h~~~l~~dp~v~~a~qq~gf~r~krgyrp~~~fd~~~~dplf~~qwylkntgqaggk~rldlnv~~aw 154 (629)
T KOG3526|consen 75 ALVHARTRRSLGHHAKLHNDPEVKMALQQEGFDRKKRGYRPINEFDINMNDPLFTKQWYLKNTGQAGGKPRLDLNVAEAW 154 (629)
T ss_pred ccchhhhhcccchhhhhccChhHhhhhhccccchhhccCCchhhhccccCCcccceeeeeecccccCCcccccccHHHHH
Confidence 32211 12234466778888876643322111 0 01111223332221 15689
Q ss_pred ccCCCCCCcEEEEeccccCCCCCCcccCCCCCCCCccccccccCCCcccccCCceeEeeEecccchhhccCcccccCCCC
Q 044578 132 SQKVADYDVIVGVLDTGIWPESASFNDTGMTPVPAHWKGACETGRGFQKHHCNRKIVGARVFYRGYEAATGKINEQNEYK 211 (769)
Q Consensus 132 ~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~ 211 (769)
..+++||+|+++|.|.||||-|||+..+ | .--..++|..+ ++.++.
T Consensus 155 a~g~tgknvttaimddgvdymhpdlk~n------------------y-------naeasydfssn---------dpfpyp 200 (629)
T KOG3526|consen 155 ALGYTGKNVTTAIMDDGVDYMHPDLKSN------------------Y-------NAEASYDFSSN---------DPFPYP 200 (629)
T ss_pred hhcccCCCceEEeecCCchhcCcchhcc------------------c-------CceeecccccC---------CCCCCC
Confidence 9999999999999999999999999743 1 11122333322 111221
Q ss_pred CCCC--CCCChhhhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeCCCCCHHHHHHHHHHHHh-CCCcEEEec
Q 044578 212 SPRD--QDGHGTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSGGCFSSDILSAVDRAVA-DGVNVLSIS 288 (769)
Q Consensus 212 ~~~D--~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~sdi~~ai~~a~~-~g~dVIn~S 288 (769)
-..| .+.|||.|||-+++...++... .|||.+.++..+|+++. .+..|++.|-..--+ ..++|.+-|
T Consensus 201 rytddwfnshgtrcagev~aardngicg--------vgvaydskvagirmldq--pymtdlieansmghep~kihiysas 270 (629)
T KOG3526|consen 201 RYTDDWFNSHGTRCAGEVVAARDNGICG--------VGVAYDSKVAGIRMLDQ--PYMTDLIEANSMGHEPSKIHIYSAS 270 (629)
T ss_pred cccchhhhccCccccceeeeeccCCcee--------eeeeeccccceeeecCC--chhhhhhhhcccCCCCceEEEEecc
Confidence 1222 5789999999998887776543 79999999999999874 456677665433222 247899999
Q ss_pred cCCCCCCCc-c---chHHHHHHHHHh-----cCcEEEEecCCCCCC
Q 044578 289 LGGGVSSYH-R---DSLSIATFGAME-----MGVFVSCSAGNGGPD 325 (769)
Q Consensus 289 lG~~~~~~~-~---~~~~~~~~~a~~-----~Gi~vV~AAGN~G~~ 325 (769)
||.....-. + ++..+++-+-++ .|-++|.|.|..|..
T Consensus 271 wgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ 316 (629)
T KOG3526|consen 271 WGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGED 316 (629)
T ss_pred cCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCc
Confidence 997553221 1 222222223332 467899999987754
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.72 E-value=3.2e-17 Score=179.34 Aligned_cols=101 Identities=29% Similarity=0.311 Sum_probs=81.1
Q ss_pred cceeeccCceEEEEEEeeCCCCCHHHHHHHHHHHHhC---CCcEEEeccCCCCCCC---ccchHHHHHHHHHhcCcEEEE
Q 044578 244 TARGMSTGARIAVYKVCWSGGCFSSDILSAVDRAVAD---GVNVLSISLGGGVSSY---HRDSLSIATFGAMEMGVFVSC 317 (769)
Q Consensus 244 ~~~GvAP~A~l~~~kv~~~~g~~~sdi~~ai~~a~~~---g~dVIn~SlG~~~~~~---~~~~~~~~~~~a~~~Gi~vV~ 317 (769)
.+.||||+|+|+.|+++++. ..+++.++.+++.+ +++|||+|||...... +.+.+..++.+|..+||+||+
T Consensus 82 ~~~gvAP~a~i~~~~~~~~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gitvva 158 (361)
T cd04056 82 YAGAIAPGANITLYFAPGTV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVLA 158 (361)
T ss_pred HHHhccCCCeEEEEEECCcC---ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 35899999999999997642 45677888888887 9999999999865332 335677777788899999999
Q ss_pred ecCCCCCCCC-----------cccCCCCceEEecCCCCCCc
Q 044578 318 SAGNGGPDPV-----------SLTNVSPWITTVGASTLDRD 347 (769)
Q Consensus 318 AAGN~G~~~~-----------~~~~~~p~vitVgA~~~~~~ 347 (769)
|+||+|.... ..++..|+|++||+++....
T Consensus 159 AsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~~ 199 (361)
T cd04056 159 ASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYTG 199 (361)
T ss_pred eCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccCC
Confidence 9999997653 35678999999999876543
No 44
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.29 E-value=2e-11 Score=115.54 Aligned_cols=118 Identities=27% Similarity=0.340 Sum_probs=92.7
Q ss_pred CCccccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCCCCcccccc-cccc
Q 044578 374 PNKQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAANGEELVAD-CHLL 452 (769)
Q Consensus 374 ~~~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~-~~~~ 452 (769)
.....+++|.+. |....+...+++|||+||+||.|.+.+|..+++++||.|+|++|+.......... ...+
T Consensus 24 ~~~~~~lv~~g~--------g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~i 95 (143)
T cd02133 24 LGKTYELVDAGL--------GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFI 95 (143)
T ss_pred CCcEEEEEEccC--------CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeE
Confidence 346778888654 3334455668999999999999999999999999999999999887543222222 3578
Q ss_pred ceEEEChhhhHHHHHHHhcCCCceEEEEecceeecccCCCeeccccCCCCCC
Q 044578 453 PAVAVGEIEGKEIKQYASTSPKATASLALLGTRVGIKPSPVVAAFSSRGPNF 504 (769)
Q Consensus 453 p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~GP~~ 504 (769)
|+++|+..+|+.|++|+++ ++++.+..+.. ..+++.++.||||||..
T Consensus 96 P~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 96 PVVFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred eEEEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 9999999999999999988 56666666555 46778899999999973
No 45
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.26 E-value=6.4e-11 Score=109.82 Aligned_cols=122 Identities=50% Similarity=0.863 Sum_probs=98.7
Q ss_pred EEeCCCcEEEEEEeccCCcCCCCCccccEEEecC-CCCCCCCcccCCCCCCCCccceEEEEeCCCC-chhhhhHHHhhcC
Q 044578 352 VKLGTGRTITGVSLYKGRRALLPNKQYPVVYMGS-NSSNSSSLCLEGTLNPTTVAGKIVICDRGIS-PRVQKGQVVKDAG 429 (769)
Q Consensus 352 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~-~~~~~~~~~~~~G 429 (769)
++|+||+++.|+++++... ..+++++... ........|.+...+..+++|||++|+++.| .+.+|..+++++|
T Consensus 2 i~LGng~~i~G~sl~~~~~-----~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~G 76 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL-----KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAG 76 (126)
T ss_pred EEeCCCCEEEEEEccCCCC-----CccceEeccCcCCCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcC
Confidence 6789999999999996542 3567776333 2334557899888888899999999999999 9999999999999
Q ss_pred ceEEEEecCCCCCccccccccccceEEEChhhhHHHHHHHhcCCCceEE
Q 044578 430 GIGVILANTAANGEELVADCHLLPAVAVGEIEGKEIKQYASTSPKATAS 478 (769)
Q Consensus 430 a~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~ 478 (769)
|.|+|++++.............+|.+.|+..+++.|++|++++.+++++
T Consensus 77 A~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 77 GAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred CcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 9999999887554333333468999999999999999999988776554
No 46
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.90 E-value=3.2e-09 Score=90.31 Aligned_cols=79 Identities=39% Similarity=0.675 Sum_probs=59.6
Q ss_pred eEEEEeCCCCCCCc-ccchHHHHHHHhhcccc--cCCCccEEEEecceeeEEEEEcCHHHHHHHhcCCCeeEEEeCeeec
Q 044578 34 TYIVQMDKSAMPES-FSDHAEWFSSTVKSVAY--KNDEDRIIYSYQTAFHGVAARLSEEEAERLEQEDGVMAIFPETKYE 110 (769)
Q Consensus 34 ~yIV~~~~~~~~~~-~~~~~~~~~~~l~~~~~--~~~~~~v~~~y~~~~~g~~~~~~~~~l~~L~~~p~V~~v~~~~~~~ 110 (769)
+|||.|+++..... ...+.+++.+++++... .....++.+.|...|+||+++++++++++|+++|+|++|+||+.++
T Consensus 1 ~YIV~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~ 80 (82)
T PF05922_consen 1 RYIVVFKDDASAASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVS 80 (82)
T ss_dssp EEEEEE-TTSTHHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEE
T ss_pred CEEEEECCCCCcchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEe
Confidence 69999999876554 66777777765554211 1457899999999999999999999999999999999999999987
Q ss_pred cc
Q 044578 111 LH 112 (769)
Q Consensus 111 ~~ 112 (769)
++
T Consensus 81 l~ 82 (82)
T PF05922_consen 81 LH 82 (82)
T ss_dssp E-
T ss_pred cC
Confidence 64
No 47
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.75 E-value=4.1e-08 Score=90.30 Aligned_cols=97 Identities=22% Similarity=0.334 Sum_probs=76.7
Q ss_pred ccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCCCCcc---cc-c-ccccc
Q 044578 378 YPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAANGEE---LV-A-DCHLL 452 (769)
Q Consensus 378 ~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~---~~-~-~~~~~ 452 (769)
-++++... ...+.|.+..+...+++|||+||+||.|.|.+|..+++++||.++|++|+...... .. . ....+
T Consensus 19 ~~lv~~~~---~~~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~i 95 (122)
T cd04816 19 APLVPLDP---ERPAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKV 95 (122)
T ss_pred EEEEEcCC---CCccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCee
Confidence 35566432 23477998888778999999999999999999999999999999999988663211 11 1 24569
Q ss_pred ceEEEChhhhHHHHHHHhcCCCceE
Q 044578 453 PAVAVGEIEGKEIKQYASTSPKATA 477 (769)
Q Consensus 453 p~~~i~~~~~~~l~~~~~~~~~~~~ 477 (769)
|+++|+..+|+.|++++..+.+.++
T Consensus 96 P~~~Is~~~G~~l~~~l~~g~~v~~ 120 (122)
T cd04816 96 PVGVITKAAGAALRRRLGAGETLEL 120 (122)
T ss_pred eEEEEcHHHHHHHHHHHcCCCEEEE
Confidence 9999999999999999988876544
No 48
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.72 E-value=6.2e-08 Score=90.47 Aligned_cols=89 Identities=19% Similarity=0.195 Sum_probs=73.4
Q ss_pred CCCcccCCCC--CCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCCCCcccc----ccccccceEEEChhhhH
Q 044578 390 SSSLCLEGTL--NPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAANGEELV----ADCHLLPAVAVGEIEGK 463 (769)
Q Consensus 390 ~~~~c~~~~~--~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~----~~~~~~p~~~i~~~~~~ 463 (769)
..+.|.+... .+.++.|+|+|++||.|.|.+|..+++++||.++|++|+...+.... .....+|+++|+..+|+
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~ 122 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGM 122 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHH
Confidence 3467988776 56789999999999999999999999999999999999976221111 12347899999999999
Q ss_pred HHHHHHhcCCCceEE
Q 044578 464 EIKQYASTSPKATAS 478 (769)
Q Consensus 464 ~l~~~~~~~~~~~~~ 478 (769)
.|++++..+.+.+++
T Consensus 123 ~l~~~l~~G~~Vtv~ 137 (138)
T cd02122 123 EILELLERGISVTMV 137 (138)
T ss_pred HHHHHHHcCCcEEEe
Confidence 999999988776654
No 49
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.71 E-value=8.1e-08 Score=87.85 Aligned_cols=89 Identities=28% Similarity=0.389 Sum_probs=72.0
Q ss_pred CCCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCCCCcccc----ccccccceEEEChhhhHH
Q 044578 389 NSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAANGEELV----ADCHLLPAVAVGEIEGKE 464 (769)
Q Consensus 389 ~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~----~~~~~~p~~~i~~~~~~~ 464 (769)
.....|.+.... .+++|||+||+|+.|.|..|..+++++||.|+|++|+........ .....+|+++|+.++|+.
T Consensus 25 ~~~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~ 103 (118)
T cd04818 25 SNTDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDA 103 (118)
T ss_pred CcccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHH
Confidence 445679888764 469999999999999999999999999999999998876422111 123579999999999999
Q ss_pred HHHHHhcCCCceEE
Q 044578 465 IKQYASTSPKATAS 478 (769)
Q Consensus 465 l~~~~~~~~~~~~~ 478 (769)
|++|++.+...+++
T Consensus 104 l~~~l~~g~~v~v~ 117 (118)
T cd04818 104 LKAALAAGGTVTVT 117 (118)
T ss_pred HHHHHhcCCcEEEe
Confidence 99999988765543
No 50
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.70 E-value=8.7e-08 Score=87.00 Aligned_cols=88 Identities=22% Similarity=0.257 Sum_probs=71.7
Q ss_pred CCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCCCC-cccc-------ccccccceEEEChhhh
Q 044578 391 SSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAANG-EELV-------ADCHLLPAVAVGEIEG 462 (769)
Q Consensus 391 ~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~~~~-------~~~~~~p~~~i~~~~~ 462 (769)
.+.|.+.. ...+++|+|+|++||.|.|.+|..+++++||.++|++|+.... .... .....||+++|+..+|
T Consensus 21 ~~gC~~~~-~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELR-NIHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCC-CccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 35698643 3568999999999999999999999999999999999986542 1111 1235799999999999
Q ss_pred HHHHHHHhcCCCceEEE
Q 044578 463 KEIKQYASTSPKATASL 479 (769)
Q Consensus 463 ~~l~~~~~~~~~~~~~~ 479 (769)
+.|++.+..+..+++.+
T Consensus 100 ~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 100 YMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHcCCceEEee
Confidence 99999999988876655
No 51
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.66 E-value=2.3e-07 Score=83.95 Aligned_cols=80 Identities=18% Similarity=0.239 Sum_probs=58.4
Q ss_pred eeEEEEEEEEEeCCCCeeEEEEEeC--------CCC----------c-EEEEecCeEEEeecCeeEEEEEEEEeeC----
Q 044578 682 SALTLRRTVTNVGPPVSNYHVVVSP--------FKG----------V-AIKVEPQKLHFTKKYQKLSYKITFTTKS---- 738 (769)
Q Consensus 682 ~~~~~~~tv~n~~~~~~ty~~~v~~--------~~g----------~-~v~v~p~~~~~~~~~~~~~~~vt~~~~~---- 738 (769)
...+++++|+|.|+...+|+++... ..| . .+...|.++++ ++|++++|+|+|+++.
T Consensus 8 ~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~~p~~~~~ 86 (112)
T PF06280_consen 8 NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTITPPSGLDA 86 (112)
T ss_dssp SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE--GGGHH
T ss_pred CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEEehhcCCc
Confidence 3589999999999999999998761 111 1 57778889999 7999999999999966
Q ss_pred CCCCcEEEEEEEEc-Cc-eeEEeEEE
Q 044578 739 PETIPEFGGLIWKD-GV-HKVRSPIV 762 (769)
Q Consensus 739 ~~~~~~~G~~~~~~-~~-~~v~~P~~ 762 (769)
..+.+++|+|.+++ .. +.+++||+
T Consensus 87 ~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 87 SNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp TT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred ccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 55899999999995 34 59999996
No 52
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.64 E-value=1.2e-07 Score=85.65 Aligned_cols=92 Identities=20% Similarity=0.250 Sum_probs=73.7
Q ss_pred ccccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCCCCcc--cc--ccccc
Q 044578 376 KQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAANGEE--LV--ADCHL 451 (769)
Q Consensus 376 ~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~--~~--~~~~~ 451 (769)
..+|++.... ...|.+..+.+.+++|+|+|++||.|+|.+|..+++++||.++|++|+...... .. .....
T Consensus 20 ~~~~~~~~~~-----~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~ 94 (120)
T cd02129 20 TLLPLRNLTS-----SVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKID 94 (120)
T ss_pred cceeeecCCC-----cCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCc
Confidence 4466666433 356998888888999999999999999999999999999999999998753111 11 13457
Q ss_pred cceEEEChhhhHHHHHHHhcC
Q 044578 452 LPAVAVGEIEGKEIKQYASTS 472 (769)
Q Consensus 452 ~p~~~i~~~~~~~l~~~~~~~ 472 (769)
||+++|+..+|+.|++.+..+
T Consensus 95 IP~v~Is~~dG~~i~~~l~~~ 115 (120)
T cd02129 95 IPVALLSYKDMLDIQQTFGDS 115 (120)
T ss_pred ccEEEEeHHHHHHHHHHhccC
Confidence 899999999999999888643
No 53
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.63 E-value=5.3e-08 Score=86.35 Aligned_cols=78 Identities=28% Similarity=0.378 Sum_probs=63.7
Q ss_pred CcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCCC----CccccccccccceEEEChhhhHHHHH
Q 044578 392 SLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAAN----GEELVADCHLLPAVAVGEIEGKEIKQ 467 (769)
Q Consensus 392 ~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~----~~~~~~~~~~~p~~~i~~~~~~~l~~ 467 (769)
..|.+......+++||||||+||.|.|.+|..+++++||.|+|++|.... ..........+|+++|+..+|+.|++
T Consensus 20 ~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~~ 99 (101)
T PF02225_consen 20 GDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALLA 99 (101)
T ss_dssp CHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHHH
T ss_pred ccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhhc
Confidence 45777778889999999999999999999999999999999999992111 22233446789999999999999999
Q ss_pred HH
Q 044578 468 YA 469 (769)
Q Consensus 468 ~~ 469 (769)
|+
T Consensus 100 ~i 101 (101)
T PF02225_consen 100 YI 101 (101)
T ss_dssp HH
T ss_pred cC
Confidence 86
No 54
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.62 E-value=2.6e-07 Score=85.31 Aligned_cols=99 Identities=16% Similarity=0.216 Sum_probs=77.1
Q ss_pred ccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCCCCccc-cccccccceEE
Q 044578 378 YPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAANGEEL-VADCHLLPAVA 456 (769)
Q Consensus 378 ~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~-~~~~~~~p~~~ 456 (769)
+|++............|.+.+.+..+++|+|+|++||.|.|.+|..+++++||.++|++|+.+..... ..+...+|.+.
T Consensus 28 ~p~~~~~~~~~~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~ 107 (129)
T cd02124 28 LPLWALSLDTSVADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAV 107 (129)
T ss_pred ceEEEeecccCCCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEE
Confidence 67766665555667889987766668999999999999999999999999999999999887543211 22233456666
Q ss_pred EChhhhHHHHHHHhcCCCceE
Q 044578 457 VGEIEGKEIKQYASTSPKATA 477 (769)
Q Consensus 457 i~~~~~~~l~~~~~~~~~~~~ 477 (769)
+ ..+|+.|++.+..+...++
T Consensus 108 ~-~~~G~~l~~~l~~G~~vtv 127 (129)
T cd02124 108 T-PEDGEAWIDALAAGSNVTV 127 (129)
T ss_pred e-HHHHHHHHHHHhcCCeEEE
Confidence 6 9999999999988766544
No 55
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.61 E-value=3.3e-07 Score=84.38 Aligned_cols=88 Identities=18% Similarity=0.192 Sum_probs=69.2
Q ss_pred CCcccCCCCC--CC----CccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCCCCcccc-----------ccccccc
Q 044578 391 SSLCLEGTLN--PT----TVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAANGEELV-----------ADCHLLP 453 (769)
Q Consensus 391 ~~~c~~~~~~--~~----~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~-----------~~~~~~p 453 (769)
.+.|.+.... +. ...++|+|++||.|.|.+|..+++++||.++|++|+.+...... .+...||
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP 101 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIP 101 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEe
Confidence 3568776543 22 37789999999999999999999999999999999865422111 1234699
Q ss_pred eEEEChhhhHHHHHHHhcCCCceEE
Q 044578 454 AVAVGEIEGKEIKQYASTSPKATAS 478 (769)
Q Consensus 454 ~~~i~~~~~~~l~~~~~~~~~~~~~ 478 (769)
+++|+..+|+.|++.+..+...+++
T Consensus 102 ~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 102 SALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred EEEECHHHHHHHHHHHhcCCeEEEe
Confidence 9999999999999999988776553
No 56
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=2.7e-07 Score=102.28 Aligned_cols=157 Identities=19% Similarity=0.193 Sum_probs=100.0
Q ss_pred CCccccCCCCCCcEEEEeccccCCCCCCcccCCCCCCCCccccccccCCCcccccCCceeEeeEecccchhhccCccccc
Q 044578 128 TSIWSQKVADYDVIVGVLDTGIWPESASFNDTGMTPVPAHWKGACETGRGFQKHHCNRKIVGARVFYRGYEAATGKINEQ 207 (769)
Q Consensus 128 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~ 207 (769)
...|..+++|+++.|+|.|+|+...||+.... +...+.+++.... +.+
T Consensus 23 ~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-------------------------~~~~~s~d~~~~~-------~~p 70 (431)
T KOG3525|consen 23 QNAWCKGYTGTRVSVTILDDGLECSHPDLRNN-------------------------YDPLGSYDVNRHD-------NDP 70 (431)
T ss_pred eeccccCCCCCceEEEEeeccccccCcccccc-------------------------cCcceeEeeecCC-------CCc
Confidence 67899999999999999999999999998642 1122223332221 112
Q ss_pred CCCCCCCCCCCChhhhhHhhccCCCCCCCccccccccceeeccCceEEEEEEeeCCCCCHHHHHHHHHHHHh-CCCcEEE
Q 044578 208 NEYKSPRDQDGHGTHTAATVAGSPVHGANLLGYAYGTARGMSTGARIAVYKVCWSGGCFSSDILSAVDRAVA-DGVNVLS 286 (769)
Q Consensus 208 ~~~~~~~D~~gHGThVAGiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~sdi~~ai~~a~~-~g~dVIn 286 (769)
.+..+......|||-||+-.+...++..- ..|+++++++..++++.. ..++...+...... .-+++-+
T Consensus 71 ~~~~~~~~~~~~g~~Ca~~~a~~~~~~~C--------~vg~~~~~~~~g~~~l~~---~v~~~~~~~~~~~~~~~~di~s 139 (431)
T KOG3525|consen 71 EPRCDGTNENKHGTRCAGCVAARANNLTC--------GVGVAYNATIGGIRMLAG---CVSDAVEAPSLGFGPCHIDIYS 139 (431)
T ss_pred ccccCCCCccccCCCCCcccccccCCCcC--------CCCcccCccccceeeeee---ecccceecccccCCCCCceeec
Confidence 22223334688999999999988644333 279999999999999853 22233333333333 2478999
Q ss_pred eccCCCCCCCc----cchHHHHHHH-----HHhcCcEEEEecCCCCCCCC
Q 044578 287 ISLGGGVSSYH----RDSLSIATFG-----AMEMGVFVSCSAGNGGPDPV 327 (769)
Q Consensus 287 ~SlG~~~~~~~----~~~~~~~~~~-----a~~~Gi~vV~AAGN~G~~~~ 327 (769)
.|||.....-. ......+... ...+|-+.++|-||.|....
T Consensus 140 csw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d 189 (431)
T KOG3525|consen 140 CSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGD 189 (431)
T ss_pred CcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCcccccc
Confidence 99997542111 1111222222 22578899999999875543
No 57
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.59 E-value=2e-07 Score=85.98 Aligned_cols=86 Identities=27% Similarity=0.312 Sum_probs=69.2
Q ss_pred CCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCCCCc-----cc----c---ccccccceEEEC
Q 044578 391 SSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAANGE-----EL----V---ADCHLLPAVAVG 458 (769)
Q Consensus 391 ~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~-----~~----~---~~~~~~p~~~i~ 458 (769)
...|.+... +.+++|||+|++||.|.|.+|..+++++||.++|++|+..... .. . .+...||+++|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 356986543 5679999999999999999999999999999999998765421 11 1 124579999999
Q ss_pred hhhhHHHHHHHhcCCCceE
Q 044578 459 EIEGKEIKQYASTSPKATA 477 (769)
Q Consensus 459 ~~~~~~l~~~~~~~~~~~~ 477 (769)
..+|+.|++.+..+...++
T Consensus 106 ~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 106 SKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred HHHHHHHHHHHHhCCceEE
Confidence 9999999999988766554
No 58
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.57 E-value=2.9e-07 Score=84.66 Aligned_cols=86 Identities=23% Similarity=0.362 Sum_probs=69.7
Q ss_pred CcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCCCCcc----ccccccccceEEEChhhhHHHHH
Q 044578 392 SLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAANGEE----LVADCHLLPAVAVGEIEGKEIKQ 467 (769)
Q Consensus 392 ~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~----~~~~~~~~p~~~i~~~~~~~l~~ 467 (769)
..|.+..+ +.+++|||+|++||.|.|.+|..+++++||.|+|++|+...+.. ...+...+|+++|+.++|+.|++
T Consensus 32 ~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~ 110 (122)
T cd02130 32 LGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALVA 110 (122)
T ss_pred CCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHHH
Confidence 45876554 35799999999999999999999999999999999988732211 11224679999999999999999
Q ss_pred HHhcCCCceEE
Q 044578 468 YASTSPKATAS 478 (769)
Q Consensus 468 ~~~~~~~~~~~ 478 (769)
.++++.+.+++
T Consensus 111 ~l~~g~~v~~~ 121 (122)
T cd02130 111 ALANGGEVSAN 121 (122)
T ss_pred HHhcCCcEEEe
Confidence 99998876554
No 59
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.55 E-value=3.1e-07 Score=84.88 Aligned_cols=86 Identities=23% Similarity=0.285 Sum_probs=70.4
Q ss_pred CcccCCC--CCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCCCCccc--c----ccccccceEEEChhhhH
Q 044578 392 SLCLEGT--LNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAANGEEL--V----ADCHLLPAVAVGEIEGK 463 (769)
Q Consensus 392 ~~c~~~~--~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~--~----~~~~~~p~~~i~~~~~~ 463 (769)
..|.+.. +...+++|||+||+++.|.|..|..+++++||.|+|++++....... . .....+|++.|+.++|+
T Consensus 31 ~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~g~ 110 (126)
T cd00538 31 VGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYADGE 110 (126)
T ss_pred EEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHHHH
Confidence 3487776 66788999999999999999999999999999999999887632111 1 13457999999999999
Q ss_pred HHHHHHhcCCCceE
Q 044578 464 EIKQYASTSPKATA 477 (769)
Q Consensus 464 ~l~~~~~~~~~~~~ 477 (769)
.|++|+.++.+.++
T Consensus 111 ~l~~~~~~~~~v~~ 124 (126)
T cd00538 111 ALLSLLEAGKTVTV 124 (126)
T ss_pred HHHHHHhcCCceEE
Confidence 99999998765443
No 60
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.51 E-value=4.5e-07 Score=85.17 Aligned_cols=84 Identities=17% Similarity=0.326 Sum_probs=68.5
Q ss_pred CCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCCCCcccc-----c-cccccceEEEChhhhHH
Q 044578 391 SSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAANGEELV-----A-DCHLLPAVAVGEIEGKE 464 (769)
Q Consensus 391 ~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~-----~-~~~~~p~~~i~~~~~~~ 464 (769)
.+.|.+.. .+++|+|+|++||.|.|.+|..+++++||.++|++|+........ . ....||+++|+..+|+.
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 36798764 479999999999999999999999999999999998765321111 1 13579999999999999
Q ss_pred HHHHHhcCCCceE
Q 044578 465 IKQYASTSPKATA 477 (769)
Q Consensus 465 l~~~~~~~~~~~~ 477 (769)
|++++..+...++
T Consensus 125 L~~~l~~g~~Vtv 137 (139)
T cd02132 125 LNKSLDQGKKVEV 137 (139)
T ss_pred HHHHHHcCCcEEE
Confidence 9999998876554
No 61
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.44 E-value=7.9e-07 Score=80.59 Aligned_cols=81 Identities=16% Similarity=0.204 Sum_probs=66.1
Q ss_pred CCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCCCC-cc-cc----ccccccceEEEChhhhH
Q 044578 390 SSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAANG-EE-LV----ADCHLLPAVAVGEIEGK 463 (769)
Q Consensus 390 ~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~~-~~----~~~~~~p~~~i~~~~~~ 463 (769)
..+.|.+. +..+++|+|+|++||.|.|.+|..+++++||.++|++|+.... .. .. .....+|+++++..+++
T Consensus 26 p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~ 103 (117)
T cd04813 26 PTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYH 103 (117)
T ss_pred CCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHH
Confidence 34679766 5588999999999999999999999999999999999876642 11 11 22457999999999999
Q ss_pred HHHHHHhcC
Q 044578 464 EIKQYASTS 472 (769)
Q Consensus 464 ~l~~~~~~~ 472 (769)
.|+.++..+
T Consensus 104 ~L~~l~~~~ 112 (117)
T cd04813 104 LLSSLLPKS 112 (117)
T ss_pred HHHHhcccc
Confidence 999987654
No 62
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.44 E-value=7.7e-07 Score=82.72 Aligned_cols=74 Identities=26% Similarity=0.390 Sum_probs=61.0
Q ss_pred CCCCCccceEEEEeCCCCc-----hhhhhHHHhhcCceEEEEecCC--CCCc-ccccc---ccccceEEEChhhhHHHHH
Q 044578 399 LNPTTVAGKIVICDRGISP-----RVQKGQVVKDAGGIGVILANTA--ANGE-ELVAD---CHLLPAVAVGEIEGKEIKQ 467 (769)
Q Consensus 399 ~~~~~~~g~ivl~~~g~~~-----~~~~~~~~~~~Ga~g~i~~n~~--~~~~-~~~~~---~~~~p~~~i~~~~~~~l~~ 467 (769)
+.+.+++|||+|++||.|. |.+|.++++++||.|+|+||+. .... ....+ ...||+++|+..+|+.|++
T Consensus 50 ~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~ 129 (139)
T cd04817 50 YICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLA 129 (139)
T ss_pred ccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHH
Confidence 3456899999999999999 9999999999999999999997 3211 12222 4589999999999999999
Q ss_pred HHhcC
Q 044578 468 YASTS 472 (769)
Q Consensus 468 ~~~~~ 472 (769)
.+...
T Consensus 130 ~l~~~ 134 (139)
T cd04817 130 ALGQS 134 (139)
T ss_pred HhcCC
Confidence 88544
No 63
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=3e-06 Score=100.94 Aligned_cols=94 Identities=20% Similarity=0.218 Sum_probs=58.2
Q ss_pred ceeeccCceEEEEEEeeCCCCCHHHHHHHHHHHHhCCC-cEEEeccCCCCC-----CCccchHHHHHHHHHhcCcEEEEe
Q 044578 245 ARGMSTGARIAVYKVCWSGGCFSSDILSAVDRAVADGV-NVLSISLGGGVS-----SYHRDSLSIATFGAMEMGVFVSCS 318 (769)
Q Consensus 245 ~~GvAP~A~l~~~kv~~~~g~~~sdi~~ai~~a~~~g~-dVIn~SlG~~~~-----~~~~~~~~~~~~~a~~~Gi~vV~A 318 (769)
..-+||+|+|..|-. .. .....+..|+++....=+ -++-.||+.... +..-+.+......|..+|+.+++|
T Consensus 288 s~A~AP~A~I~lvva--p~-~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~AA 364 (1174)
T COG4934 288 SHAMAPKANIDLVVA--PN-PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFAA 364 (1174)
T ss_pred hhccCccCceEEEEc--CC-CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEEe
Confidence 478999999998866 11 222223333333332211 333356664221 112344555556788999999999
Q ss_pred cCCCCCCCC--------cccCCCCceEEecC
Q 044578 319 AGNGGPDPV--------SLTNVSPWITTVGA 341 (769)
Q Consensus 319 AGN~G~~~~--------~~~~~~p~vitVgA 341 (769)
+|.+|.... ..++.+|+|++||-
T Consensus 365 SGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 365 SGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred cccccccCCCcccceeecccCCCccEEeecC
Confidence 999986654 34568899999996
No 64
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.36 E-value=1.7e-06 Score=82.63 Aligned_cols=84 Identities=25% Similarity=0.240 Sum_probs=69.1
Q ss_pred CCcccCCCCCC---CCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCCCCccc-cc-----cccccceEEEChhh
Q 044578 391 SSLCLEGTLNP---TTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAANGEEL-VA-----DCHLLPAVAVGEIE 461 (769)
Q Consensus 391 ~~~c~~~~~~~---~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~-~~-----~~~~~p~~~i~~~~ 461 (769)
.+.|.+....+ ..+.|+|+|++||.|+|.+|..+++++||.++|++|+....... .. ....||+++|+..+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 45798776544 78999999999999999999999999999999999986543221 11 14589999999999
Q ss_pred hHHHHHHHhcCCC
Q 044578 462 GKEIKQYASTSPK 474 (769)
Q Consensus 462 ~~~l~~~~~~~~~ 474 (769)
|+.|+.++.....
T Consensus 130 g~~L~~~l~~~~~ 142 (153)
T cd02123 130 GEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999987654
No 65
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=98.11 E-value=3.4e-05 Score=71.38 Aligned_cols=92 Identities=18% Similarity=0.199 Sum_probs=71.1
Q ss_pred CccccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCC--chhhhhHHHhhcCceEEEEecCCCCCcccc------
Q 044578 375 NKQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGIS--PRVQKGQVVKDAGGIGVILANTAANGEELV------ 446 (769)
Q Consensus 375 ~~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~--~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~------ 446 (769)
..+.++++.+.... ..+...+++|||++++++.+ .+..|..+++++||.|+|++|+........
T Consensus 22 ~~~~~lV~~g~G~~--------~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~ 93 (127)
T cd04819 22 EAKGEPVDAGYGLP--------KDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTE 93 (127)
T ss_pred CeeEEEEEeCCCCH--------HHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCccccccccc
Confidence 35678888765421 22335579999999999999 889999999999999999998765533211
Q ss_pred -ccccccceEEEChhhhHHHHHHHhcCCC
Q 044578 447 -ADCHLLPAVAVGEIEGKEIKQYASTSPK 474 (769)
Q Consensus 447 -~~~~~~p~~~i~~~~~~~l~~~~~~~~~ 474 (769)
.....+|++.|+.++++.|.+.++.+..
T Consensus 94 ~~~~~~IP~v~Is~edg~~L~~~l~~g~~ 122 (127)
T cd04819 94 DGPPSPIPAASVSGEDGLRLARVAERNDT 122 (127)
T ss_pred CCCCCCCCEEEEeHHHHHHHHHHHhcCCc
Confidence 2245799999999999999999987543
No 66
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=97.45 E-value=0.00046 Score=64.44 Aligned_cols=78 Identities=15% Similarity=0.236 Sum_probs=61.9
Q ss_pred CCCCccceEEEEeCCCC------chhhh-------hHHHhhcCceEEEEecCCCC-------Ccccc-ccccccceEEEC
Q 044578 400 NPTTVAGKIVICDRGIS------PRVQK-------GQVVKDAGGIGVILANTAAN-------GEELV-ADCHLLPAVAVG 458 (769)
Q Consensus 400 ~~~~~~g~ivl~~~g~~------~~~~~-------~~~~~~~Ga~g~i~~n~~~~-------~~~~~-~~~~~~p~~~i~ 458 (769)
...+++|||++++++.| .|..| ...++++||.|+|++|.... +.... .....+|++.|+
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 35689999999999999 88888 69999999999999985422 11111 223569999999
Q ss_pred hhhhHHHHHHHhcCCCceE
Q 044578 459 EIEGKEIKQYASTSPKATA 477 (769)
Q Consensus 459 ~~~~~~l~~~~~~~~~~~~ 477 (769)
.+++..|.+.++.+..+++
T Consensus 114 ~ed~~~L~r~l~~g~~v~~ 132 (134)
T cd04815 114 VEDADMLERLAARGKPIRV 132 (134)
T ss_pred hhcHHHHHHHHhCCCCeEE
Confidence 9999999999988765544
No 67
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=97.00 E-value=0.002 Score=62.76 Aligned_cols=72 Identities=15% Similarity=0.242 Sum_probs=57.0
Q ss_pred CCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCCCC------------------ccc-----------c--c--
Q 044578 401 PTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAANG------------------EEL-----------V--A-- 447 (769)
Q Consensus 401 ~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~------------------~~~-----------~--~-- 447 (769)
..+++|||+|+++|.|.+.+|..+++++||+|+|++++.... +.. . .
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 468999999999999999999999999999999999874210 000 0 0
Q ss_pred -cccccceEEEChhhhHHHHHHHhcC
Q 044578 448 -DCHLLPAVAVGEIEGKEIKQYASTS 472 (769)
Q Consensus 448 -~~~~~p~~~i~~~~~~~l~~~~~~~ 472 (769)
....||+.-|+..+++.|++.+.-.
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~G~ 156 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMGGP 156 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcCCC
Confidence 1235889999999999999988643
No 68
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=96.73 E-value=0.032 Score=49.29 Aligned_cols=81 Identities=16% Similarity=0.166 Sum_probs=63.9
Q ss_pred eeEEEEEEEEEeCCCCeeEEEEEeCCCCcEEEEecCeEEEeecCeeEEEEEEEEeeCCCCCcEEEEEEEEcCceeEEeEE
Q 044578 682 SALTLRRTVTNVGPPVSNYHVVVSPFKGVAIKVEPQKLHFTKKYQKLSYKITFTTKSPETIPEFGGLIWKDGVHKVRSPI 761 (769)
Q Consensus 682 ~~~~~~~tv~n~~~~~~ty~~~v~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~G~~~~~~~~~~v~~P~ 761 (769)
...+.+++|+|.+..+..|++.......-.++++|..-.+ ++|++.+++|+|.+... .+.+++.|.+.-.+..+.+|+
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~~-~g~~~~~l~i~~e~~~~~i~v 97 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTKP-LGDYEGSLVITTEGGSFEIPV 97 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCCC-CceEEEEEEEEECCeEEEEEE
Confidence 4678999999999999999998755345567788877666 79999999999996433 456889999886666888887
Q ss_pred EEE
Q 044578 762 VIT 764 (769)
Q Consensus 762 ~~~ 764 (769)
-..
T Consensus 98 ~a~ 100 (102)
T PF14874_consen 98 KAE 100 (102)
T ss_pred EEE
Confidence 654
No 69
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=96.54 E-value=0.0062 Score=56.95 Aligned_cols=64 Identities=22% Similarity=0.249 Sum_probs=52.6
Q ss_pred CccccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCC------------------chhhhhHHHhhcCceEEEEe
Q 044578 375 NKQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGIS------------------PRVQKGQVVKDAGGIGVILA 436 (769)
Q Consensus 375 ~~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~------------------~~~~~~~~~~~~Ga~g~i~~ 436 (769)
....|+||.+.+.. ...|....+...+++|||||+.+|.| .+..|.++++++||.|+|++
T Consensus 19 ~~~aelVfvGyGi~--a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii 96 (142)
T cd04814 19 IKDAPLVFVGYGIK--APELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIV 96 (142)
T ss_pred ccceeeEEecCCcC--CCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEE
Confidence 35678898876532 34688888888899999999999877 46789999999999999999
Q ss_pred cCCC
Q 044578 437 NTAA 440 (769)
Q Consensus 437 n~~~ 440 (769)
++..
T Consensus 97 ~~~~ 100 (142)
T cd04814 97 HELA 100 (142)
T ss_pred eCCC
Confidence 9855
No 70
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=96.38 E-value=0.0081 Score=55.82 Aligned_cols=63 Identities=25% Similarity=0.323 Sum_probs=51.3
Q ss_pred ccccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCc------------hhhhhHHHhhcCceEEEEecCCC
Q 044578 376 KQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISP------------RVQKGQVVKDAGGIGVILANTAA 440 (769)
Q Consensus 376 ~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~------------~~~~~~~~~~~Ga~g~i~~n~~~ 440 (769)
..-++||.+.+.. ...|....+...+++|||||+.++.|. +..|.+++.++||.|+|++++..
T Consensus 22 v~gelVfvGyG~~--~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 22 VEAPLVFVGYGLV--APELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred ceEeEEEecCCcC--ccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 4567888876543 356887777788999999999998863 66899999999999999999854
No 71
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=96.04 E-value=0.017 Score=54.77 Aligned_cols=64 Identities=23% Similarity=0.225 Sum_probs=50.5
Q ss_pred ccccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCC------------------CchhhhhHHHhhcCceEEEEec
Q 044578 376 KQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGI------------------SPRVQKGQVVKDAGGIGVILAN 437 (769)
Q Consensus 376 ~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~------------------~~~~~~~~~~~~~Ga~g~i~~n 437 (769)
.+-++||.+.+.. ...|....+...+++|||||+.++. |.+..|..++++.||.|+|+++
T Consensus 20 vtg~lVfvGyGi~--~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~ 97 (151)
T cd04822 20 VTAPVVFAGYGIT--APELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVN 97 (151)
T ss_pred ceEeEEEecCCcC--ccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEe
Confidence 3567888775532 3557777777889999999998763 5677899999999999999999
Q ss_pred CCCC
Q 044578 438 TAAN 441 (769)
Q Consensus 438 ~~~~ 441 (769)
+...
T Consensus 98 d~~~ 101 (151)
T cd04822 98 GPNS 101 (151)
T ss_pred CCcc
Confidence 8654
No 72
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=95.95 E-value=0.022 Score=62.13 Aligned_cols=81 Identities=14% Similarity=0.265 Sum_probs=65.6
Q ss_pred CCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCCCCc------cccccccccceEEEChhhhHHHHHHHhcCCC
Q 044578 401 PTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAANGE------ELVADCHLLPAVAVGEIEGKEIKQYASTSPK 474 (769)
Q Consensus 401 ~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~------~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~ 474 (769)
...++++++++.||.|.|.+|.+.++++||.++++.|+...-. ........||++++.+++++.+..-..++.+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 4678999999999999999999999999999999999854311 1222357899999999999999987777766
Q ss_pred ceEEEEe
Q 044578 475 ATASLAL 481 (769)
Q Consensus 475 ~~~~~~~ 481 (769)
.++.+..
T Consensus 171 V~~~lYa 177 (541)
T KOG2442|consen 171 VELALYA 177 (541)
T ss_pred EEEEEEC
Confidence 6555543
No 73
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=95.48 E-value=0.018 Score=53.14 Aligned_cols=101 Identities=17% Similarity=0.213 Sum_probs=74.1
Q ss_pred ccccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCCCCccc------c---
Q 044578 376 KQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAANGEEL------V--- 446 (769)
Q Consensus 376 ~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~------~--- 446 (769)
..+++|.+. ...+|... .+.-...+.+.+++||+|+|..|..+++++||..+|+.++......+ .
T Consensus 64 e~~~lV~ad-----Pp~aC~el-rN~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~ 137 (193)
T KOG3920|consen 64 ENLELVLAD-----PPHACEEL-RNEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDE 137 (193)
T ss_pred cCcceeecC-----ChhHHHHH-hhcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcc
Confidence 345666643 34557543 23456788999999999999999999999999999998876654432 2
Q ss_pred -ccccccceEEEChhhhHHHHHHHhcCCCceEEEEec
Q 044578 447 -ADCHLLPAVAVGEIEGKEIKQYASTSPKATASLALL 482 (769)
Q Consensus 447 -~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~~~~~ 482 (769)
.+...+|+.++-..+|..++..++....+-+.+..+
T Consensus 138 sq~~AniPa~fllg~~Gy~ir~sL~r~~r~ha~i~IP 174 (193)
T KOG3920|consen 138 SQDRANIPAVFLLGVTGYYIRVSLKRYFRDHAKIDIP 174 (193)
T ss_pred cccccCCceEEEeccceEEEehhHHHhCCccEEEecc
Confidence 236789999999999988777777666555555443
No 74
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.10 E-value=0.088 Score=44.02 Aligned_cols=57 Identities=21% Similarity=0.256 Sum_probs=38.0
Q ss_pred eeEEEEEEEEEeCCCC-eeEEEEEeCCCCcEEEEecCeEEEeecCeeEEEEEEEEeeC
Q 044578 682 SALTLRRTVTNVGPPV-SNYHVVVSPFKGVAIKVEPQKLHFTKKYQKLSYKITFTTKS 738 (769)
Q Consensus 682 ~~~~~~~tv~n~~~~~-~ty~~~v~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~ 738 (769)
...+++++|+|.|..+ ...++++..|.|-++...|..+.--++|++++++++|++..
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~ 62 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPA 62 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-T
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCC
Confidence 5789999999999765 45888999999999888888765448999999999999875
No 75
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=94.85 E-value=0.036 Score=51.82 Aligned_cols=39 Identities=26% Similarity=0.341 Sum_probs=36.4
Q ss_pred CCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCC
Q 044578 402 TTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAA 440 (769)
Q Consensus 402 ~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 440 (769)
-+++|||+|++.|...+..|.++++..||.|+|+|.+..
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChh
Confidence 579999999999999999999999999999999998743
No 76
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=94.26 E-value=0.065 Score=54.10 Aligned_cols=40 Identities=38% Similarity=0.370 Sum_probs=36.8
Q ss_pred CCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCC
Q 044578 401 PTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAA 440 (769)
Q Consensus 401 ~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 440 (769)
..+++|||+|+++|.+.+..|.++++.+||+|+|++++..
T Consensus 67 gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~ 106 (220)
T cd02121 67 GIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPA 106 (220)
T ss_pred CCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCch
Confidence 5689999999999999889999999999999999999853
No 77
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.24 E-value=0.21 Score=53.43 Aligned_cols=81 Identities=19% Similarity=0.149 Sum_probs=62.5
Q ss_pred CcccCCCC---CCCCccceEEEEeCCCCchhhhhHHHhhcCceEEEEecCCCCCccc----cccccccceEEEChhhhHH
Q 044578 392 SLCLEGTL---NPTTVAGKIVICDRGISPRVQKGQVVKDAGGIGVILANTAANGEEL----VADCHLLPAVAVGEIEGKE 464 (769)
Q Consensus 392 ~~c~~~~~---~~~~~~g~ivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~----~~~~~~~p~~~i~~~~~~~ 464 (769)
++|++... ........++++.||+|+|.+|..+++++|..++|++|+....... ......+++.+++...|+.
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~ 142 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGEL 142 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHH
Confidence 45665432 2345667899999999999999999999999999999987654332 2235678899999999999
Q ss_pred HHHHHhcC
Q 044578 465 IKQYASTS 472 (769)
Q Consensus 465 l~~~~~~~ 472 (769)
|..|....
T Consensus 143 l~~~~~~~ 150 (348)
T KOG4628|consen 143 LSSYAGRT 150 (348)
T ss_pred HHHhhccc
Confidence 99875443
No 78
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=92.46 E-value=0.65 Score=42.19 Aligned_cols=55 Identities=11% Similarity=0.103 Sum_probs=40.3
Q ss_pred eEEEEEEEEEeCCCCeeEEEEEeCCCCcEEEEecCeEEEeecCeeEEEEEEEEeeC
Q 044578 683 ALTLRRTVTNVGPPVSNYHVVVSPFKGVAIKVEPQKLHFTKKYQKLSYKITFTTKS 738 (769)
Q Consensus 683 ~~~~~~tv~n~~~~~~ty~~~v~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~ 738 (769)
.-.++++|+|.+..+.+|++++..++|+++......+++ ++|++..+.|.|.++.
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~ 86 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPP 86 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-G
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECH
Confidence 456899999999999999999999889999665578888 7999999999999876
No 79
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=92.27 E-value=1.6 Score=39.88 Aligned_cols=79 Identities=14% Similarity=0.170 Sum_probs=55.8
Q ss_pred CceeeeccCCCcceeEEEEEEEEEeCCCCeeEEEEEeC----CCC--------------cE------EEEecCeEEEeec
Q 044578 669 PAISVVFPETANVSALTLRRTVTNVGPPVSNYHVVVSP----FKG--------------VA------IKVEPQKLHFTKK 724 (769)
Q Consensus 669 ps~~~~~~~~~~~~~~~~~~tv~n~~~~~~ty~~~v~~----~~g--------------~~------v~v~p~~~~~~~~ 724 (769)
..|-+..... +..+++++|+|.++.+.+|.+.+.. ..| +. ++ .|..+++ ++
T Consensus 17 ~YFdL~~~P~---q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~-~~~~Vtl-~~ 91 (121)
T PF06030_consen 17 SYFDLKVKPG---QKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVK-IPKEVTL-PP 91 (121)
T ss_pred CeEEEEeCCC---CEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhcc-CCcEEEE-CC
Confidence 3444444332 6889999999999999999998632 111 11 22 2555888 79
Q ss_pred CeeEEEEEEEEeeC-CCCCcEEEEEEEEc
Q 044578 725 YQKLSYKITFTTKS-PETIPEFGGLIWKD 752 (769)
Q Consensus 725 ~~~~~~~vt~~~~~-~~~~~~~G~~~~~~ 752 (769)
+++++++++++.++ .-.+.+-|-|.++.
T Consensus 92 ~~sk~V~~~i~~P~~~f~G~ilGGi~~~e 120 (121)
T PF06030_consen 92 NESKTVTFTIKMPKKAFDGIILGGIYFSE 120 (121)
T ss_pred CCEEEEEEEEEcCCCCcCCEEEeeEEEEe
Confidence 99999999999887 34778888887753
No 80
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=88.30 E-value=1.2 Score=42.49 Aligned_cols=62 Identities=18% Similarity=0.168 Sum_probs=43.2
Q ss_pred ccccEEEecCCCCCCCCcccCCCCCCCCccceEEEEeCCCCch-------------------hhhhHHHhhcCceEEEEe
Q 044578 376 KQYPVVYMGSNSSNSSSLCLEGTLNPTTVAGKIVICDRGISPR-------------------VQKGQVVKDAGGIGVILA 436 (769)
Q Consensus 376 ~~~~l~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~-------------------~~~~~~~~~~Ga~g~i~~ 436 (769)
..-|+||.+.+-... .-....+...|++||||++..+.-.+ ..|.+.+.+.||.|+|+.
T Consensus 22 ~~~elVFvGyGi~ap--e~~~dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v 99 (157)
T cd04821 22 KDSPLVFVGYGIVAP--EYGWDDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIV 99 (157)
T ss_pred ccCCEEEeccCccCc--ccCcccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEE
Confidence 456888877653321 11222455679999999998664322 248999999999999998
Q ss_pred cCC
Q 044578 437 NTA 439 (769)
Q Consensus 437 n~~ 439 (769)
+..
T Consensus 100 ~~~ 102 (157)
T cd04821 100 HET 102 (157)
T ss_pred eCC
Confidence 764
No 81
>COG1470 Predicted membrane protein [Function unknown]
Probab=86.65 E-value=5.4 Score=44.09 Aligned_cols=70 Identities=16% Similarity=0.101 Sum_probs=58.3
Q ss_pred eeEEEEEEEEEeCCCCee-EEEEEeCCCCcEEEEecCeEEEeecCeeEEEEEEEEeeC-CCCCcEEEEEEEE
Q 044578 682 SALTLRRTVTNVGPPVSN-YHVVVSPFKGVAIKVEPQKLHFTKKYQKLSYKITFTTKS-PETIPEFGGLIWK 751 (769)
Q Consensus 682 ~~~~~~~tv~n~~~~~~t-y~~~v~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~-~~~~~~~G~~~~~ 751 (769)
...+....+.|.|+.+.| -++++..|+|-++.|.|.++---++|+.+++.+|++++. ...+-|+=+|+-+
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~k 468 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITITAK 468 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEEEe
Confidence 478899999999987765 789999999999999998766668999999999999987 4456666666665
No 82
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=80.94 E-value=8.2 Score=34.05 Aligned_cols=54 Identities=15% Similarity=0.112 Sum_probs=41.3
Q ss_pred eeEEEEEEEEEeCCCCeeEEEEEeCCCCcEEEEecCeEEEeecCeeEEEEEEEEeeC
Q 044578 682 SALTLRRTVTNVGPPVSNYHVVVSPFKGVAIKVEPQKLHFTKKYQKLSYKITFTTKS 738 (769)
Q Consensus 682 ~~~~~~~tv~n~~~~~~ty~~~v~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~ 738 (769)
...+.+++|+|.++...-|++....|.... |.|..-.+ +++++.++.|++....
T Consensus 18 ~~~~~~l~l~N~s~~~i~fKiktt~~~~y~--v~P~~G~i-~p~~~~~i~I~~~~~~ 71 (109)
T PF00635_consen 18 KQQSCELTLTNPSDKPIAFKIKTTNPNRYR--VKPSYGII-EPGESVEITITFQPFD 71 (109)
T ss_dssp S-EEEEEEEEE-SSSEEEEEEEES-TTTEE--EESSEEEE--TTEEEEEEEEE-SSS
T ss_pred ceEEEEEEEECCCCCcEEEEEEcCCCceEE--ecCCCEEE-CCCCEEEEEEEEEecc
Confidence 356788899999999999999999887665 56998777 7999999999998854
No 83
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=79.39 E-value=16 Score=34.10 Aligned_cols=68 Identities=19% Similarity=0.243 Sum_probs=54.6
Q ss_pred eEEEEEEEEEeCCCC-eeEEEEEeCCCCcEEEEecCeEEEeecCeeEEEEEEEEeeCCCCCcEEEEEEEE
Q 044578 683 ALTLRRTVTNVGPPV-SNYHVVVSPFKGVAIKVEPQKLHFTKKYQKLSYKITFTTKSPETIPEFGGLIWK 751 (769)
Q Consensus 683 ~~~~~~tv~n~~~~~-~ty~~~v~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~G~~~~~ 751 (769)
...+.+.+-|..+.. ..-++......++++--.|..+++ .|++.+.++.+|+......+++||.|++.
T Consensus 70 DIvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL-~P~~~~~i~~~iKVsStetGvIfG~I~Yd 138 (140)
T PF07718_consen 70 DIVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITL-APHGFARIKATIKVSSTETGVIFGNIVYD 138 (140)
T ss_pred eEEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceee-CCCcEEEEEEEEEEEeccCCEEEEEEEEe
Confidence 456667777766542 345566666778898888999999 79999999999999988899999999985
No 84
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=79.22 E-value=21 Score=32.33 Aligned_cols=67 Identities=15% Similarity=0.102 Sum_probs=47.5
Q ss_pred eEEEEEEEEEeCCCCeeEEEEEeC---CCC----cEEEEecCeEEEeecCeeEEEEEEEEeeC-CCCCcEEEEEEEE
Q 044578 683 ALTLRRTVTNVGPPVSNYHVVVSP---FKG----VAIKVEPQKLHFTKKYQKLSYKITFTTKS-PETIPEFGGLIWK 751 (769)
Q Consensus 683 ~~~~~~tv~n~~~~~~ty~~~v~~---~~g----~~v~v~p~~~~~~~~~~~~~~~vt~~~~~-~~~~~~~G~~~~~ 751 (769)
..+.+++|+|.++.+..+.+.+.. ... -.+-++|..+.+ ++|++|.++| +.... +.+.-..=+|.++
T Consensus 15 ~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~~~~~~~E~~yrl~~~ 89 (122)
T PF00345_consen 15 QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGSKLPIDRESLYRLSFR 89 (122)
T ss_dssp SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECSGS-SSS-EEEEEEEE
T ss_pred CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecCCCCCCceEEEEEEEE
Confidence 346788999999988888887764 111 257789999999 7999999999 76443 3444444556665
No 85
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=79.16 E-value=1.4 Score=52.33 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=22.0
Q ss_pred CCCCCCcEEEEeccccCCCCCCcc
Q 044578 134 KVADYDVIVGVLDTGIWPESASFN 157 (769)
Q Consensus 134 ~~~G~Gv~VgVIDtGid~~Hp~f~ 157 (769)
.+.|+||+|||+|||+|+.-|-+.
T Consensus 77 eYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 77 EYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred CCCCCceEEEEeecCCCCCCCCce
Confidence 678999999999999999999875
No 86
>COG1470 Predicted membrane protein [Function unknown]
Probab=77.65 E-value=29 Score=38.64 Aligned_cols=70 Identities=9% Similarity=0.048 Sum_probs=51.4
Q ss_pred eeEEEEEEEEEeCCCCeeEEEEEe-CCCCcEEEEecC-----eEEEeecCeeEEEEEEEEeeC-CCCCcEEEEEEEEc
Q 044578 682 SALTLRRTVTNVGPPVSNYHVVVS-PFKGVAIKVEPQ-----KLHFTKKYQKLSYKITFTTKS-PETIPEFGGLIWKD 752 (769)
Q Consensus 682 ~~~~~~~tv~n~~~~~~ty~~~v~-~~~g~~v~v~p~-----~~~~~~~~~~~~~~vt~~~~~-~~~~~~~G~~~~~~ 752 (769)
.+..|++++.|.|..+.+|..++. .|+|-...+.-. ++.+ ++||+++|+|.|.+.. ...+-|.=.|+-++
T Consensus 284 ~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps~na~pG~Ynv~I~A~s 360 (513)
T COG1470 284 TTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPSLNATPGTYNVTITASS 360 (513)
T ss_pred CceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEe-cCCCceEEEEEEecCCCCCCCceeEEEEEec
Confidence 467899999999999999999998 788877665433 3555 6999999999999876 22333433344333
No 87
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=74.60 E-value=13 Score=41.70 Aligned_cols=56 Identities=18% Similarity=0.192 Sum_probs=48.4
Q ss_pred eeEEEEEEEEEeCCCCeeEEEEEeCCCCcEEEEecCeEEEeecCeeEEEEEEEEeeC
Q 044578 682 SALTLRRTVTNVGPPVSNYHVVVSPFKGVAIKVEPQKLHFTKKYQKLSYKITFTTKS 738 (769)
Q Consensus 682 ~~~~~~~tv~n~~~~~~ty~~~v~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~ 738 (769)
..-..++++.|.+..+.+|+++++..++.++...+..+++ ++|++.++.|.+..+.
T Consensus 346 i~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~~ 401 (434)
T TIGR02745 346 VENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHV-KAGEKVKLPVFLRTPP 401 (434)
T ss_pred EEEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEE-CCCCEEEEEEEEEech
Confidence 3556889999999999999999999999998876557888 7999999999998864
No 88
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=71.77 E-value=13 Score=27.37 Aligned_cols=44 Identities=14% Similarity=0.020 Sum_probs=28.2
Q ss_pred EEEEEeCCCCeeEEEEEeCCCCcEEEEecCeEEEeecCeeEEEEEEE
Q 044578 688 RTVTNVGPPVSNYHVVVSPFKGVAIKVEPQKLHFTKKYQKLSYKITF 734 (769)
Q Consensus 688 ~tv~n~~~~~~ty~~~v~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~ 734 (769)
.+++|.|+.+..-+-....-.-..+.... -.+ ++||+..++|++
T Consensus 2 F~~~N~g~~~L~I~~v~tsCgCt~~~~~~--~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQTSCGCTTAEYSK--KPI-APGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEEeeEccCCEEeeCCc--ceE-CCCCEEEEEEEC
Confidence 57889998876654433344444544433 335 799999988874
No 89
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=66.08 E-value=18 Score=30.16 Aligned_cols=42 Identities=24% Similarity=0.350 Sum_probs=31.4
Q ss_pred EEEEecCeEEEeecCeeEEEEEEEEeeCCCCCcEEEEEEEEcCcee
Q 044578 711 AIKVEPQKLHFTKKYQKLSYKITFTTKSPETIPEFGGLIWKDGVHK 756 (769)
Q Consensus 711 ~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~G~~~~~~~~~~ 756 (769)
.+++.|+.+++ ..|+++.|+++++...... ...+.|++....
T Consensus 4 ~i~i~p~~~~l-~~G~~~~l~a~~~~~~~~~---~~~v~w~Ssn~~ 45 (81)
T smart00635 4 SVTVTPTTASV-KKGLTLQLTATVTPSSAKV---TGKVTWTSSNPS 45 (81)
T ss_pred EEEEeCCeeEE-eCCCeEEEEEEEECCCCCc---cceEEEEECCCc
Confidence 57788999999 6899999999976643322 778889864433
No 90
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=53.08 E-value=56 Score=27.86 Aligned_cols=52 Identities=19% Similarity=0.193 Sum_probs=32.3
Q ss_pred eeEEEEEEEEEeCCCC-eeEEEEEeCCCCcEEEEecCeE-EEeecCeeEEEEEEEEee
Q 044578 682 SALTLRRTVTNVGPPV-SNYHVVVSPFKGVAIKVEPQKL-HFTKKYQKLSYKITFTTK 737 (769)
Q Consensus 682 ~~~~~~~tv~n~~~~~-~ty~~~v~~~~g~~v~v~p~~~-~~~~~~~~~~~~vt~~~~ 737 (769)
...+++.+|+|.|... ..+.+.+... |..+ .-..+ .+ ++|+++++++++.+.
T Consensus 19 ~~~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~--~~~~i~~L-~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 19 EPVTITVTVKNNGTADAENVTVRLYLD-GNSV--STVTIPSL-APGESETVTFTWTPP 72 (101)
T ss_dssp SEEEEEEEEEE-SSS-BEEEEEEEEET-TEEE--EEEEESEB--TTEEEEEEEEEE-S
T ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEC-Ccee--ccEEECCc-CCCcEEEEEEEEEeC
Confidence 5789999999999864 4577766443 2222 11112 45 689999988888876
No 91
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=52.20 E-value=53 Score=35.57 Aligned_cols=67 Identities=19% Similarity=0.182 Sum_probs=36.1
Q ss_pred eeEEEEEEEEEeCCCCee---EE-EEEe------------------CCCCcEEEEecCeEEEeecCeeEEEEEEEEeeC-
Q 044578 682 SALTLRRTVTNVGPPVSN---YH-VVVS------------------PFKGVAIKVEPQKLHFTKKYQKLSYKITFTTKS- 738 (769)
Q Consensus 682 ~~~~~~~tv~n~~~~~~t---y~-~~v~------------------~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~- 738 (769)
.+.+++++|||.|+++.. |. +.+. +..| ++|+|++- + .+||+++++|+++-..
T Consensus 263 R~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~g--L~vs~~~p-I-~PGETrtl~V~a~dA~W 338 (381)
T PF04744_consen 263 RTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERG--LSVSDNSP-I-APGETRTLTVEAQDAAW 338 (381)
T ss_dssp SEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT---EEES--S--B--TT-EEEEEEEEE-HHH
T ss_pred cEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCc--ceeCCCCC-c-CCCceEEEEEEeehhHH
Confidence 588999999999998643 22 1111 1124 34556542 3 6999999999886432
Q ss_pred ----------CCCCcEEEEEEEEc
Q 044578 739 ----------PETIPEFGGLIWKD 752 (769)
Q Consensus 739 ----------~~~~~~~G~~~~~~ 752 (769)
..++..-|-|.+.|
T Consensus 339 eveRL~~l~~D~dsrfgGLLff~d 362 (381)
T PF04744_consen 339 EVERLSDLIYDPDSRFGGLLFFFD 362 (381)
T ss_dssp HHTTGGGGGGSSS-EEEEEEEEEE
T ss_pred HHhhhhhhhcCcccceeEEEEEEc
Confidence 13455556666665
No 92
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=48.16 E-value=93 Score=26.19 Aligned_cols=54 Identities=24% Similarity=0.275 Sum_probs=27.2
Q ss_pred EEEEEEEEEeCCCCee--------EEEEEeCCCCcE---------EEEecCeEEEeecCeeEEEEEEEEeeC
Q 044578 684 LTLRRTVTNVGPPVSN--------YHVVVSPFKGVA---------IKVEPQKLHFTKKYQKLSYKITFTTKS 738 (769)
Q Consensus 684 ~~~~~tv~n~~~~~~t--------y~~~v~~~~g~~---------v~v~p~~~~~~~~~~~~~~~vt~~~~~ 738 (769)
..++++|+|.++.+.+ |-+.+....|-. .+-.-...++ ++||+++|+.+++...
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l-~pGe~~~~~~~~~~~~ 72 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETL-EPGESLTYEETWDLKD 72 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE--TT-EEEEEEEESS--
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEE-CCCCEEEEEEEECCCC
Confidence 4577888888876544 344454443322 2222334566 7999999998887654
No 93
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=43.01 E-value=1.2e+02 Score=27.00 Aligned_cols=67 Identities=15% Similarity=0.163 Sum_probs=44.9
Q ss_pred ceeec-cCceEEEEEEeeCCCCCHHHHHHHHHHHHhCCCcEEEeccCCCCC------CCccchHHHHHHHHHhc-CcEEE
Q 044578 245 ARGMS-TGARIAVYKVCWSGGCFSSDILSAVDRAVADGVNVLSISLGGGVS------SYHRDSLSIATFGAMEM-GVFVS 316 (769)
Q Consensus 245 ~~GvA-P~A~l~~~kv~~~~g~~~sdi~~ai~~a~~~g~dVIn~SlG~~~~------~~~~~~~~~~~~~a~~~-Gi~vV 316 (769)
+.... ++++|+. ++.++||....++.-++++.+.|+|+|-+|-..... ++ -+.+.. ...++ |+.||
T Consensus 30 F~~y~~~~~elvg--f~~CgGCpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~-~~~~~~---~I~~~~gi~VV 103 (107)
T PF08821_consen 30 FARYDDEDVELVG--FFTCGGCPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPH-IDEIKK---IIEEKFGIEVV 103 (107)
T ss_pred cccCCCCCeEEEE--EeeCCCCChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCC-HHHHHH---HHHHHhCCCEe
Confidence 34444 4677766 456678888999999999999999999998764331 22 233332 23344 88877
Q ss_pred E
Q 044578 317 C 317 (769)
Q Consensus 317 ~ 317 (769)
.
T Consensus 104 ~ 104 (107)
T PF08821_consen 104 E 104 (107)
T ss_pred e
Confidence 5
No 94
>PLN03080 Probable beta-xylosidase; Provisional
Probab=41.13 E-value=54 Score=40.06 Aligned_cols=53 Identities=15% Similarity=0.074 Sum_probs=32.6
Q ss_pred eEEEEEEEEEeCCCCeeEEEE--EeCCCC-c----EEEEecCeEEEeecCeeEEEEEEEEe
Q 044578 683 ALTLRRTVTNVGPPVSNYHVV--VSPFKG-V----AIKVEPQKLHFTKKYQKLSYKITFTT 736 (769)
Q Consensus 683 ~~~~~~tv~n~~~~~~ty~~~--v~~~~g-~----~v~v~p~~~~~~~~~~~~~~~vt~~~ 736 (769)
..+++++|||+|+..-.-.+. +..|.. + +--+--..+.+ ++||+++++++++.
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L-~~Ges~~V~~~l~~ 744 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHT-ASGRSTETEIVVDP 744 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEee-CCCCEEEEEEEeCc
Confidence 588999999999865443333 222321 1 10011223445 78999999999986
No 95
>PRK13203 ureB urease subunit beta; Reviewed
Probab=40.03 E-value=70 Score=27.97 Aligned_cols=51 Identities=22% Similarity=0.335 Sum_probs=28.5
Q ss_pred eeEEEEEEEEEeCCCCee----EEEE-E--------eCCCCcEEEEe-cCeEEEeecCeeEEEEEE
Q 044578 682 SALTLRRTVTNVGPPVSN----YHVV-V--------SPFKGVAIKVE-PQKLHFTKKYQKLSYKIT 733 (769)
Q Consensus 682 ~~~~~~~tv~n~~~~~~t----y~~~-v--------~~~~g~~v~v~-p~~~~~~~~~~~~~~~vt 733 (769)
+..+++++|+|.||.+.. |+.- + ...-|..+.+. -..+.| ++|+++++++.
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~LV 82 (102)
T PRK13203 18 GRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRF-EPGQTREVELV 82 (102)
T ss_pred CCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeE-CCCCeEEEEEE
Confidence 356789999999997632 3321 1 11123333321 123567 78888886553
No 96
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=39.69 E-value=70 Score=39.05 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=34.0
Q ss_pred eeEEEEEEEEEeCCCCeeEEEE--EeCCCCcEEEEec-------CeEEEeecCeeEEEEEEEEeeC
Q 044578 682 SALTLRRTVTNVGPPVSNYHVV--VSPFKGVAIKVEP-------QKLHFTKKYQKLSYKITFTTKS 738 (769)
Q Consensus 682 ~~~~~~~tv~n~~~~~~ty~~~--v~~~~g~~v~v~p-------~~~~~~~~~~~~~~~vt~~~~~ 738 (769)
...+++++|||+|+..-.-.+. +..|.+- +. .| +.+.+ ++||+++++++++...
T Consensus 667 ~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~~-~~-~P~k~L~gF~Kv~L-~pGes~~V~~~l~~~~ 729 (765)
T PRK15098 667 GKVTASVTVTNTGKREGATVVQLYLQDVTAS-MS-RPVKELKGFEKIML-KPGETQTVSFPIDIEA 729 (765)
T ss_pred CeEEEEEEEEECCCCCccEEEEEeccCCCCC-CC-CHHHhccCceeEeE-CCCCeEEEEEeecHHH
Confidence 4789999999999854332222 2333221 10 12 23455 7999999999998765
No 97
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=39.51 E-value=72 Score=27.86 Aligned_cols=51 Identities=16% Similarity=0.271 Sum_probs=28.8
Q ss_pred eeEEEEEEEEEeCCCCee----EEEE-Ee--------CCCCcEEEEe-cCeEEEeecCeeEEEEEE
Q 044578 682 SALTLRRTVTNVGPPVSN----YHVV-VS--------PFKGVAIKVE-PQKLHFTKKYQKLSYKIT 733 (769)
Q Consensus 682 ~~~~~~~tv~n~~~~~~t----y~~~-v~--------~~~g~~v~v~-p~~~~~~~~~~~~~~~vt 733 (769)
+..+.+++|+|.||.+.. |+.- +. ..-|..+.+. -..+.| ++|+++++++.
T Consensus 18 gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~LV 82 (101)
T cd00407 18 GREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRF-EPGEEKEVELV 82 (101)
T ss_pred CCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEE-CCCCeEEEEEE
Confidence 356789999999997632 4321 11 1123333331 123567 78888886553
No 98
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=39.42 E-value=1.4e+02 Score=26.24 Aligned_cols=56 Identities=20% Similarity=0.245 Sum_probs=36.5
Q ss_pred eeEEEEEEEEEeCCCC-eeEEEE----EeCCCCcE---EEEecCeEEEeecCeeEEEEEEEEeeC
Q 044578 682 SALTLRRTVTNVGPPV-SNYHVV----VSPFKGVA---IKVEPQKLHFTKKYQKLSYKITFTTKS 738 (769)
Q Consensus 682 ~~~~~~~tv~n~~~~~-~ty~~~----v~~~~g~~---v~v~p~~~~~~~~~~~~~~~vt~~~~~ 738 (769)
...++.++++|..+.. .+-++. ...-.|+. .......+++ +++++.+++++|.+..
T Consensus 15 ~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l-~p~~~~~~~~~i~p~~ 78 (107)
T PF00927_consen 15 QDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTL-KPGETKSVEVTITPSQ 78 (107)
T ss_dssp SEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE--TTEEEEEEEEE-HHS
T ss_pred CCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceee-CCCCEEEEEEEEEcee
Confidence 5789999999999876 442222 22234663 4556666777 7999999999998865
No 99
>PRK13202 ureB urease subunit beta; Reviewed
Probab=37.41 E-value=83 Score=27.61 Aligned_cols=49 Identities=12% Similarity=0.182 Sum_probs=28.0
Q ss_pred EEEEEEEEEeCCCCee----EEEE-E--------eCCCCcEEEEe-cCeEEEeecCeeEEEEEE
Q 044578 684 LTLRRTVTNVGPPVSN----YHVV-V--------SPFKGVAIKVE-PQKLHFTKKYQKLSYKIT 733 (769)
Q Consensus 684 ~~~~~tv~n~~~~~~t----y~~~-v--------~~~~g~~v~v~-p~~~~~~~~~~~~~~~vt 733 (769)
.+++++|+|.||.+.. |+.- + ...-|..+.+. -..+.| ++|+++++++.
T Consensus 21 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~LV 83 (104)
T PRK13202 21 SRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRF-EPGIPQIVGLV 83 (104)
T ss_pred ceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEE-CCCCeEEEEEE
Confidence 5789999999997632 4421 1 11123333331 123567 78888886654
No 100
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=36.69 E-value=86 Score=27.37 Aligned_cols=51 Identities=18% Similarity=0.261 Sum_probs=28.7
Q ss_pred eeEEEEEEEEEeCCCCee----EEEE-E--------eCCCCcEEEEe-cCeEEEeecCeeEEEEEE
Q 044578 682 SALTLRRTVTNVGPPVSN----YHVV-V--------SPFKGVAIKVE-PQKLHFTKKYQKLSYKIT 733 (769)
Q Consensus 682 ~~~~~~~tv~n~~~~~~t----y~~~-v--------~~~~g~~v~v~-p~~~~~~~~~~~~~~~vt 733 (769)
+..+.+++|+|.||.+.. |+.- + ...-|..+.+. -..+.| ++|+++++++.
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~LV 82 (101)
T TIGR00192 18 GRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRF-EPGEEKSVELV 82 (101)
T ss_pred CCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeE-CCCCeEEEEEE
Confidence 356789999999997632 4321 1 11123333321 123567 78989886553
No 101
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=35.51 E-value=86 Score=27.33 Aligned_cols=16 Identities=25% Similarity=0.210 Sum_probs=12.0
Q ss_pred eeEEEEEEEEEeCCCC
Q 044578 682 SALTLRRTVTNVGPPV 697 (769)
Q Consensus 682 ~~~~~~~tv~n~~~~~ 697 (769)
+..+.+++|+|.||.+
T Consensus 17 gr~~~~l~V~N~GDRP 32 (100)
T PF00699_consen 17 GRERITLEVTNTGDRP 32 (100)
T ss_dssp TSEEEEEEEEE-SSS-
T ss_pred CCcEEEEEEEeCCCcc
Confidence 4678999999999975
No 102
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=35.01 E-value=18 Score=16.43 Aligned_cols=6 Identities=67% Similarity=0.972 Sum_probs=4.3
Q ss_pred cccCCC
Q 044578 496 AFSSRG 501 (769)
Q Consensus 496 ~fSS~G 501 (769)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 577776
No 103
>PRK13204 ureB urease subunit beta; Reviewed
Probab=33.14 E-value=1.6e+02 Score=27.75 Aligned_cols=51 Identities=18% Similarity=0.239 Sum_probs=28.9
Q ss_pred eeEEEEEEEEEeCCCCee----EEEE-E--------eCCCCcEEEEe-cCeEEEeecCeeEEEEEE
Q 044578 682 SALTLRRTVTNVGPPVSN----YHVV-V--------SPFKGVAIKVE-PQKLHFTKKYQKLSYKIT 733 (769)
Q Consensus 682 ~~~~~~~tv~n~~~~~~t----y~~~-v--------~~~~g~~v~v~-p~~~~~~~~~~~~~~~vt 733 (769)
+..+++++|+|.||.+.. |+.- + ...-|..+.+. -..+.| ++|+++++++.
T Consensus 41 gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRF-EPG~~k~V~LV 105 (159)
T PRK13204 41 GRPRTTLTVRNTGDRPIQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRF-EPGDEKEVTLV 105 (159)
T ss_pred CCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeE-CCCCeeEEEEE
Confidence 456799999999997632 4321 1 11123333321 123567 78888886654
No 104
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=30.40 E-value=48 Score=23.78 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=18.8
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhcc
Q 044578 560 AALLKARHPEWSPAAIKSALMTTA 583 (769)
Q Consensus 560 aALl~q~~p~lsp~~ik~~L~~TA 583 (769)
+--|++.+|++++..|+..|...-
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcC
Confidence 345788999999999999997643
No 105
>PRK13201 ureB urease subunit beta; Reviewed
Probab=30.00 E-value=1.1e+02 Score=28.08 Aligned_cols=51 Identities=14% Similarity=0.151 Sum_probs=28.7
Q ss_pred eeEEEEEEEEEeCCCCee----EEEE-E--------eCCCCcEEEEe-cCeEEEeecCeeEEEEEE
Q 044578 682 SALTLRRTVTNVGPPVSN----YHVV-V--------SPFKGVAIKVE-PQKLHFTKKYQKLSYKIT 733 (769)
Q Consensus 682 ~~~~~~~tv~n~~~~~~t----y~~~-v--------~~~~g~~v~v~-p~~~~~~~~~~~~~~~vt 733 (769)
+..+++++|+|.||.+.. |+.- + ...-|..+.+. -..+.| ++|+++++++.
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRF-EPG~~k~V~LV 82 (136)
T PRK13201 18 HHPETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRF-EPGDKKEVQLV 82 (136)
T ss_pred CCCEEEEEEEeCCCcceEeccccchhhcCccccccHhhhcCcccccCCCCeEeE-CCCCeEEEEEE
Confidence 355789999999997632 4321 1 11123333321 123567 68888886654
No 106
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=29.91 E-value=3.4e+02 Score=22.89 Aligned_cols=54 Identities=19% Similarity=0.124 Sum_probs=35.4
Q ss_pred EEEEEEEEEeCCCCeeEEEEEeCCCCcEEEEecCeEEEeecCeeEEEEEEEEeeCCCCCcEE
Q 044578 684 LTLRRTVTNVGPPVSNYHVVVSPFKGVAIKVEPQKLHFTKKYQKLSYKITFTTKSPETIPEF 745 (769)
Q Consensus 684 ~~~~~tv~n~~~~~~ty~~~v~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~ 745 (769)
..+.++++|.|....++++.-..-.+ -.|.++++ ++|++.+..+.+. .+++||.
T Consensus 20 g~l~l~l~N~g~~~~~~~v~~~~y~~----~~~~~~~v-~ag~~~~~~w~l~---~s~gwYD 73 (89)
T PF05506_consen 20 GNLRLTLSNPGSAAVTFTVYDNAYGG----GGPWTYTV-AAGQTVSLTWPLA---ASGGWYD 73 (89)
T ss_pred CEEEEEEEeCCCCcEEEEEEeCCcCC----CCCEEEEE-CCCCEEEEEEeec---CCCCcEE
Confidence 37899999999888887777532110 12455677 6788877666552 3466666
No 107
>PRK15019 CsdA-binding activator; Provisional
Probab=29.91 E-value=47 Score=31.43 Aligned_cols=33 Identities=21% Similarity=0.194 Sum_probs=28.1
Q ss_pred eeeccccchhhhhHHHHHHHHhhCCCCCHHHHHH
Q 044578 544 NILSGTSMSCPHVSGIAALLKARHPEWSPAAIKS 577 (769)
Q Consensus 544 ~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~ 577 (769)
..+.|.| =|++|-|++|||.+.+-..+|++|.+
T Consensus 77 ~~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 77 MHFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 4444665 68999999999999999999999976
No 108
>PRK13205 ureB urease subunit beta; Reviewed
Probab=28.83 E-value=1.2e+02 Score=28.43 Aligned_cols=51 Identities=10% Similarity=0.153 Sum_probs=28.9
Q ss_pred eeEEEEEEEEEeCCCCee----EEEE-Ee--------CCCCcEEEEe-cCeEEEeecCeeEEEEEE
Q 044578 682 SALTLRRTVTNVGPPVSN----YHVV-VS--------PFKGVAIKVE-PQKLHFTKKYQKLSYKIT 733 (769)
Q Consensus 682 ~~~~~~~tv~n~~~~~~t----y~~~-v~--------~~~g~~v~v~-p~~~~~~~~~~~~~~~vt 733 (769)
+..+++++|+|.|+.+.. |+.- +. ..-|..+.+. -..+.| ++|+++++++.
T Consensus 18 GR~~i~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRF-EPGe~ktV~LV 82 (162)
T PRK13205 18 GREAKTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRL-EPGDARTVNLV 82 (162)
T ss_pred CCcEEEEEEEeCCCCceEeccccchhhcCccccccHHHhcCcccccCCCCeEeE-CCCCeEEEEEE
Confidence 356799999999997632 4421 11 1123333331 123567 68888886654
No 109
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=28.48 E-value=52 Score=30.79 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=29.1
Q ss_pred eeeeccccchhhhhHHHHHHHHhhCCCCCHHHHHHH
Q 044578 543 FNILSGTSMSCPHVSGIAALLKARHPEWSPAAIKSA 578 (769)
Q Consensus 543 y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~ 578 (769)
-..+.|.| =|++|-|++||+.+.+-+.+|++|.+.
T Consensus 71 ~~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 71 TLHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 34455666 589999999999999999999998744
No 110
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=28.09 E-value=62 Score=34.96 Aligned_cols=52 Identities=17% Similarity=0.240 Sum_probs=33.8
Q ss_pred eeEEEEEEEEEeCCCCee---EE-EEE-------------eCCC-----CcEEEEecCeEEEeecCeeEEEEEEEEee
Q 044578 682 SALTLRRTVTNVGPPVSN---YH-VVV-------------SPFK-----GVAIKVEPQKLHFTKKYQKLSYKITFTTK 737 (769)
Q Consensus 682 ~~~~~~~tv~n~~~~~~t---y~-~~v-------------~~~~-----g~~v~v~p~~~~~~~~~~~~~~~vt~~~~ 737 (769)
.+.+++.+|||.|+.+.. |+ +.+ +-|+ |++|+ +++ -+ .+||++++.|+++-.
T Consensus 282 R~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~--d~~-pI-~PGETr~v~v~aqdA 355 (399)
T TIGR03079 282 RALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVD--DQS-AI-APGETVEVKMEAKDA 355 (399)
T ss_pred cEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccceeC--CCC-Cc-CCCcceEEEEEEehh
Confidence 578899999999997643 22 322 1122 66554 433 13 799999998888643
No 111
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=27.78 E-value=1.3e+02 Score=26.11 Aligned_cols=50 Identities=16% Similarity=0.265 Sum_probs=27.5
Q ss_pred eeEEEEEEEEEeCCCCee----EEEE-E--------eCCCCcEEEEe-cCeEEEeecCeeEEEEE
Q 044578 682 SALTLRRTVTNVGPPVSN----YHVV-V--------SPFKGVAIKVE-PQKLHFTKKYQKLSYKI 732 (769)
Q Consensus 682 ~~~~~~~tv~n~~~~~~t----y~~~-v--------~~~~g~~v~v~-p~~~~~~~~~~~~~~~v 732 (769)
+..+.+++|.|+||.+.. |+.- + +..-|.-+.+. -..+.| ++|+++++++
T Consensus 18 gr~~~~i~V~NtGDRPIQVGSHfHF~EvN~aL~FDR~~a~G~RLdIpagTAVRF-EPG~~k~V~L 81 (106)
T COG0832 18 GRPTVTIEVANTGDRPIQVGSHFHFFEVNRALSFDREKAYGMRLDIPAGTAVRF-EPGDEKEVEL 81 (106)
T ss_pred CCcceEEEEeecCCCceEeecceeehhhCcceeechhhhcceEecccCCceEee-CCCCccEEEE
Confidence 355778889999997632 4421 1 11123333332 112566 6788888554
No 112
>PF09244 DUF1964: Domain of unknown function (DUF1964); InterPro: IPR015325 This domain is C-terminal to the catalytic sucrose phosphorylase beta/alpha barrel domain. It adopts a beta-sandwich fold, with Greek-key topology and is functionally uncharacterised []. ; PDB: 1R7A_B 2GDU_A 2GDV_A.
Probab=27.34 E-value=1.1e+02 Score=24.00 Aligned_cols=36 Identities=22% Similarity=0.343 Sum_probs=21.5
Q ss_pred eEEEeecCeeEEEEEEEEeeC---CCCCcEEEEEEEEcC
Q 044578 718 KLHFTKKYQKLSYKITFTTKS---PETIPEFGGLIWKDG 753 (769)
Q Consensus 718 ~~~~~~~~~~~~~~vt~~~~~---~~~~~~~G~~~~~~~ 753 (769)
+++|+..|++-+-++||++.. ..+..---.|.|+|.
T Consensus 15 Sitf~W~g~~t~atLtFePg~Glg~~n~~pVatl~W~Ds 53 (68)
T PF09244_consen 15 SITFTWTGATTSATLTFEPGRGLGVDNTTPVATLAWTDS 53 (68)
T ss_dssp EEEEEEE-SS-EEEEEE-GGGC-STT--S--EEEEEEET
T ss_pred EEEEEEeccccEEEEEEccCcccCccCCcceeEEEEecc
Confidence 577777788888889999876 223334467999983
No 113
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=27.24 E-value=1.8e+02 Score=32.65 Aligned_cols=75 Identities=23% Similarity=0.352 Sum_probs=54.9
Q ss_pred eeeccCceEEEEEEeeCCCCCHHHHHHHHHHHHhCC-CcEEEeccCCCC----CCCccchHHHHHHHHHhcCcEEEEecC
Q 044578 246 RGMSTGARIAVYKVCWSGGCFSSDILSAVDRAVADG-VNVLSISLGGGV----SSYHRDSLSIATFGAMEMGVFVSCSAG 320 (769)
Q Consensus 246 ~GvAP~A~l~~~kv~~~~g~~~sdi~~ai~~a~~~g-~dVIn~SlG~~~----~~~~~~~~~~~~~~a~~~Gi~vV~AAG 320 (769)
+-=.|.++++.|-+.-.+......|++||+.|-+.+ +|||=.-=||++ ..+.++.+.+++ ....++||.|-|
T Consensus 157 ~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRAi---~~s~iPvISAVG 233 (440)
T COG1570 157 SRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARAI---AASRIPVISAVG 233 (440)
T ss_pred HhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhccChHHHHHHH---HhCCCCeEeecc
Confidence 334588999888776543367778999999999887 999999989876 233344555333 367899999998
Q ss_pred CCC
Q 044578 321 NGG 323 (769)
Q Consensus 321 N~G 323 (769)
-+-
T Consensus 234 HEt 236 (440)
T COG1570 234 HET 236 (440)
T ss_pred cCC
Confidence 764
No 114
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=27.05 E-value=2e+02 Score=30.83 Aligned_cols=72 Identities=22% Similarity=0.313 Sum_probs=49.5
Q ss_pred ccCceEEEEEEeeCCCCCHHHHHHHHHHHHhCC----CcEEEeccCCCC----CCCccchHHHHHHHHHhcCcEEEEecC
Q 044578 249 STGARIAVYKVCWSGGCFSSDILSAVDRAVADG----VNVLSISLGGGV----SSYHRDSLSIATFGAMEMGVFVSCSAG 320 (769)
Q Consensus 249 AP~A~l~~~kv~~~~g~~~sdi~~ai~~a~~~g----~dVIn~SlG~~~----~~~~~~~~~~~~~~a~~~Gi~vV~AAG 320 (769)
.|.+++..|-+.-.+-....+|+.||+.+-+.+ +|||-+-=||++ ..+.+..+..+ ..+.-++|+.|-|
T Consensus 39 ~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~vara---i~~~~~PvisaIG 115 (319)
T PF02601_consen 39 NPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARA---IAASPIPVISAIG 115 (319)
T ss_pred CCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHH---HHhCCCCEEEecC
Confidence 466666655554332267778999999998765 999999999876 22333444433 3367799999999
Q ss_pred CCC
Q 044578 321 NGG 323 (769)
Q Consensus 321 N~G 323 (769)
=+-
T Consensus 116 He~ 118 (319)
T PF02601_consen 116 HET 118 (319)
T ss_pred CCC
Confidence 764
No 115
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=26.91 E-value=1.9e+02 Score=21.98 Aligned_cols=38 Identities=21% Similarity=0.144 Sum_probs=24.1
Q ss_pred eeEEEEEEEEEeCCCCee-EEEEEeCCCCcEEEEecCeEEE
Q 044578 682 SALTLRRTVTNVGPPVSN-YHVVVSPFKGVAIKVEPQKLHF 721 (769)
Q Consensus 682 ~~~~~~~tv~n~~~~~~t-y~~~v~~~~g~~v~v~p~~~~~ 721 (769)
...+++++++|.|..+.+ ..++=.-|.|+.. .|.++++
T Consensus 12 d~v~Yti~v~N~g~~~a~~v~v~D~lP~g~~~--v~~S~~~ 50 (53)
T TIGR01451 12 DTITYTITVTNNGNVPATNVVVTDILPSGTTF--VSNSVTV 50 (53)
T ss_pred CEEEEEEEEEECCCCceEeEEEEEcCCCCCEE--EeCcEEE
Confidence 588999999999986654 3333334666554 3554443
No 116
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=25.43 E-value=63 Score=30.23 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=28.0
Q ss_pred eeeccccchhhhhHHHHHHHHhhCCCCCHHHHHH
Q 044578 544 NILSGTSMSCPHVSGIAALLKARHPEWSPAAIKS 577 (769)
Q Consensus 544 ~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~ 577 (769)
..+.|.| =|++|-|++||+.+.+-..||++|.+
T Consensus 67 ~~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 67 IELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3445666 68999999999999999999999875
No 117
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=24.95 E-value=56 Score=22.28 Aligned_cols=13 Identities=38% Similarity=0.721 Sum_probs=10.7
Q ss_pred chhhhhHHHHHHH
Q 044578 551 MSCPHVSGIAALL 563 (769)
Q Consensus 551 mAaP~VAG~aALl 563 (769)
.|||.+||++|-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998744
No 118
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=24.42 E-value=62 Score=30.34 Aligned_cols=34 Identities=26% Similarity=0.163 Sum_probs=26.9
Q ss_pred eeeeccccchhhhhHHHHHHHHhhCCCCCHHHHHH
Q 044578 543 FNILSGTSMSCPHVSGIAALLKARHPEWSPAAIKS 577 (769)
Q Consensus 543 y~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~ 577 (769)
-..+.|=|= |++|.|++|++++.+-..||++|.+
T Consensus 71 ~~~F~gdSd-A~ivrGL~aill~~~~G~t~~eI~~ 104 (144)
T COG2166 71 TLHFFGDSD-ARIVRGLLAILLAAYSGKTAAEILA 104 (144)
T ss_pred eEEEeccch-hHHHHHHHHHHHHHHcCCCHHHHHc
Confidence 344445553 6899999999999999999999853
No 119
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=23.54 E-value=75 Score=29.13 Aligned_cols=34 Identities=24% Similarity=0.159 Sum_probs=27.3
Q ss_pred eeeccccchhhhhHHHHHHHHhhCCCCCHHHHHHH
Q 044578 544 NILSGTSMSCPHVSGIAALLKARHPEWSPAAIKSA 578 (769)
Q Consensus 544 ~~~sGTSmAaP~VAG~aALl~q~~p~lsp~~ik~~ 578 (769)
..+.|.|= |+.|-|++||+.+.+-+.+|++|.+.
T Consensus 58 ~~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 58 VHFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 35556665 67999999999999999999998764
No 120
>PRK13198 ureB urease subunit beta; Reviewed
Probab=22.78 E-value=1.8e+02 Score=27.35 Aligned_cols=51 Identities=14% Similarity=0.249 Sum_probs=28.9
Q ss_pred eeEEEEEEEEEeCCCCee----EEEE-E--------eCCCCcEEEEe-cCeEEEeecCeeEEEEEE
Q 044578 682 SALTLRRTVTNVGPPVSN----YHVV-V--------SPFKGVAIKVE-PQKLHFTKKYQKLSYKIT 733 (769)
Q Consensus 682 ~~~~~~~tv~n~~~~~~t----y~~~-v--------~~~~g~~v~v~-p~~~~~~~~~~~~~~~vt 733 (769)
+..+.+++|+|.||.+.. |+.- + ...-|..+.+. -..+.| ++|+++++++.
T Consensus 46 gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRF-EPG~~k~V~LV 110 (158)
T PRK13198 46 NKPVTKVKVRNTGDRPIQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRF-EPGDETEVPLI 110 (158)
T ss_pred CCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEee-CCCCeeEEEEE
Confidence 356789999999997632 4321 1 11123333331 123567 78888886654
No 121
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=22.54 E-value=2.6e+02 Score=28.69 Aligned_cols=53 Identities=8% Similarity=0.014 Sum_probs=37.2
Q ss_pred eEEEEEEEEEeCCCCeeEEEEEe---CC---C----------CcEEEEecCeEEEeecCeeEEEEEEEEe
Q 044578 683 ALTLRRTVTNVGPPVSNYHVVVS---PF---K----------GVAIKVEPQKLHFTKKYQKLSYKITFTT 736 (769)
Q Consensus 683 ~~~~~~tv~n~~~~~~ty~~~v~---~~---~----------g~~v~v~p~~~~~~~~~~~~~~~vt~~~ 736 (769)
.....++|.|.|+.+..+.+.+. .| . .-.+-++|..+++ ++|+++.++|.-..
T Consensus 32 ~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L-~pg~~q~IRli~lg 100 (234)
T PRK15308 32 EEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFAL-PAGTTRTVRVISLQ 100 (234)
T ss_pred cceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEE-CCCCeEEEEEEEcC
Confidence 34567888999998877777652 22 1 1246788999999 78888887765543
No 122
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=22.49 E-value=3.8e+02 Score=34.73 Aligned_cols=83 Identities=12% Similarity=0.160 Sum_probs=51.0
Q ss_pred eeEEEEEEEEEeCCCCeeEE-EEEeC----------------C-------------CCcEEEEecCeEEEeecCeeEEEE
Q 044578 682 SALTLRRTVTNVGPPVSNYH-VVVSP----------------F-------------KGVAIKVEPQKLHFTKKYQKLSYK 731 (769)
Q Consensus 682 ~~~~~~~tv~n~~~~~~ty~-~~v~~----------------~-------------~g~~v~v~p~~~~~~~~~~~~~~~ 731 (769)
...+|++|++|.|..+..|- ++... | +.+.+.=.+ .+ ++|++.+|+
T Consensus 799 E~~~~~ItL~N~S~~pvd~l~~sf~DS~~~~~~~~l~~k~l~~~e~yelE~~l~~~~~~~i~~~~---~I-~Pg~~~~~~ 874 (1185)
T PF08626_consen 799 EKQTFTITLRNTSSVPVDFLSFSFQDSTIEPLQKALSNKDLSPDELYELEWQLFKLPAFRILNKP---PI-PPGESATFT 874 (1185)
T ss_pred cEEEEEEEEEECCccccceEEEEEEeccHHHHhhhhhcccCChhhhhhhhhhhhcCcceeecccC---cc-CCCCEEEEE
Confidence 58899999999997765543 33220 0 011111112 45 799999999
Q ss_pred EEEEeeCCCCCcEEEEEEEEcC----------ceeEEeEEEEEeecc
Q 044578 732 ITFTTKSPETIPEFGGLIWKDG----------VHKVRSPIVITRLSS 768 (769)
Q Consensus 732 vt~~~~~~~~~~~~G~~~~~~~----------~~~v~~P~~~~~~~~ 768 (769)
|.++.....-..-...+.+.-+ ...+++|+.|-...|
T Consensus 875 ~~~~~~~~~~~~~~~~i~l~y~~~~~~~~~~y~Rql~ipl~vtV~~s 921 (1185)
T PF08626_consen 875 VEVDGKPGPIQLTYADIQLEYGYSGEDSSTFYTRQLSIPLTVTVNPS 921 (1185)
T ss_pred EEecCcccccceeeeeEEEEecccCCCCCCCeeEEEEEEEEEEEece
Confidence 9987654333344444544311 678999999887754
No 123
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=21.10 E-value=78 Score=24.42 Aligned_cols=39 Identities=18% Similarity=0.293 Sum_probs=22.9
Q ss_pred ceeeeccccchhhhhHHHHH------HHHhhCCCCCHHHHHHHHH
Q 044578 542 KFNILSGTSMSCPHVSGIAA------LLKARHPEWSPAAIKSALM 580 (769)
Q Consensus 542 ~y~~~sGTSmAaP~VAG~aA------Ll~q~~p~lsp~~ik~~L~ 580 (769)
+--.+.||=+..=.|....+ -+.+.||.|++++|+++|.
T Consensus 10 G~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 10 GQPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp G--EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred CcceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 34455667666555555432 3566699999999999884
No 124
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=20.26 E-value=5.7e+02 Score=22.13 Aligned_cols=31 Identities=26% Similarity=0.265 Sum_probs=24.0
Q ss_pred eEEEEEEEEEeCCCC-eeEEEEEeCCCCcEEE
Q 044578 683 ALTLRRTVTNVGPPV-SNYHVVVSPFKGVAIK 713 (769)
Q Consensus 683 ~~~~~~tv~n~~~~~-~ty~~~v~~~~g~~v~ 713 (769)
-....++|+|.++.+ ..|++++.-|.+.+++
T Consensus 14 Gf~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~ 45 (101)
T PF00553_consen 14 GFQGEVTVTNNGSSPINGWTVTFTFPSGQTIT 45 (101)
T ss_dssp EEEEEEEEEESSSSTEESEEEEEEESTTEEEE
T ss_pred CeEEEEEEEECCCCccCCEEEEEEeCCCCEEe
Confidence 456688999998876 4699999888776655
No 125
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=20.04 E-value=6.3e+02 Score=25.75 Aligned_cols=51 Identities=12% Similarity=0.051 Sum_probs=35.8
Q ss_pred eEEEEEEEEEeCCCCeeEEEE--EeCC---CCcEEEEecCeEEEeecCeeEEEEEEEEe
Q 044578 683 ALTLRRTVTNVGPPVSNYHVV--VSPF---KGVAIKVEPQKLHFTKKYQKLSYKITFTT 736 (769)
Q Consensus 683 ~~~~~~tv~n~~~~~~ty~~~--v~~~---~g~~v~v~p~~~~~~~~~~~~~~~vt~~~ 736 (769)
....+++|+|.++.+ |.+. ++.. ....+-|+|..+++ ++|+++.++|....
T Consensus 39 ~~~~si~v~N~~~~p--~lvQ~wv~~~~~~~~~~fivtPPl~rl-~pg~~q~vRii~~~ 94 (230)
T PRK09918 39 DGEGSINVKNTDSNP--ILLYTTLVDLPEDKSKLLLVTPPVARV-EPGQSQQVRFILKS 94 (230)
T ss_pred CCeEEEEEEcCCCCc--EEEEEEEecCCCCCCCCEEEcCCeEEE-CCCCceEEEEEECC
Confidence 456778889988753 5443 3221 12457789999999 79999998887653
Done!